Query 002220
Match_columns 951
No_of_seqs 781 out of 5794
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 17:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1E-45 3.5E-50 348.1 12.5 174 4-182 2-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.3E-44 4.6E-49 344.8 11.3 169 6-176 31-200 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 4.7E-41 1.6E-45 391.6 21.9 298 189-500 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 8.6E-35 2.9E-39 377.6 22.3 305 180-499 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 5.4E-35 1.8E-39 341.3 16.7 277 185-492 127-436 (1221)
6 4eco_A Uncharacterized protein 100.0 3.2E-34 1.1E-38 341.6 19.0 348 596-946 193-601 (636)
7 3rgz_A Protein brassinosteroid 100.0 9.2E-34 3.1E-38 345.8 23.4 398 534-946 228-718 (768)
8 3rgz_A Protein brassinosteroid 100.0 2E-33 7E-38 342.7 25.4 400 533-946 104-552 (768)
9 3t6q_A CD180 antigen; protein- 100.0 1.7E-32 5.7E-37 327.4 32.4 401 532-945 36-513 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-32 4.7E-37 328.1 28.0 398 533-947 36-560 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 3.6E-33 1.2E-37 337.0 21.7 306 607-922 490-838 (876)
12 1z6t_A APAF-1, apoptotic prote 100.0 4E-33 1.4E-37 330.6 20.1 296 180-495 118-448 (591)
13 3t6q_A CD180 antigen; protein- 100.0 1.3E-31 4.4E-36 319.7 30.9 398 535-947 87-562 (606)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-31 7.3E-36 328.4 27.6 405 533-947 28-562 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 3.5E-31 1.2E-35 313.8 26.8 400 533-947 32-533 (570)
16 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-30 4.3E-35 311.1 30.4 378 533-927 60-561 (606)
17 4ecn_A Leucine-rich repeat pro 100.0 1.9E-30 6.4E-35 313.4 30.4 351 539-905 435-842 (876)
18 4eco_A Uncharacterized protein 100.0 1.6E-30 5.4E-35 309.7 27.9 350 538-901 192-598 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-31 2.1E-35 309.9 23.5 371 533-924 30-510 (549)
20 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-30 2.7E-34 308.5 33.4 332 610-947 224-624 (680)
21 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-30 2.2E-34 301.3 24.6 387 536-947 12-512 (549)
22 2z63_A TOLL-like receptor 4, v 100.0 1.3E-29 4.5E-34 300.2 27.5 381 533-931 56-538 (570)
23 2z7x_B TOLL-like receptor 1, v 100.0 6.3E-30 2.2E-34 299.0 23.4 370 533-924 25-481 (520)
24 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-29 1.7E-33 307.2 32.3 369 532-921 7-461 (844)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-28 6.5E-33 296.4 33.9 358 533-899 29-463 (680)
26 1o6v_A Internalin A; bacterial 100.0 1.6E-28 5.3E-33 282.2 29.1 341 550-922 43-386 (466)
27 1jl5_A Outer protein YOPM; leu 100.0 2.2E-28 7.5E-33 278.1 28.9 339 555-945 73-429 (454)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-29 1.2E-33 295.2 22.8 369 533-922 56-508 (562)
29 3v47_A TOLL-like receptor 5B a 100.0 1.4E-28 4.7E-33 282.6 26.3 341 553-907 30-412 (455)
30 1o6v_A Internalin A; bacterial 100.0 6.2E-28 2.1E-32 277.2 28.4 338 534-904 51-389 (466)
31 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-28 5E-33 287.4 23.2 368 556-947 3-483 (520)
32 4fmz_A Internalin; leucine ric 100.0 2.4E-27 8.2E-32 261.7 30.0 289 596-922 54-344 (347)
33 3v47_A TOLL-like receptor 5B a 100.0 1.5E-27 5E-32 274.0 27.0 342 584-930 28-414 (455)
34 4fmz_A Internalin; leucine ric 100.0 4E-27 1.4E-31 259.9 26.8 306 548-902 39-345 (347)
35 1jl5_A Outer protein YOPM; leu 100.0 1.9E-27 6.5E-32 270.4 24.5 361 534-945 16-409 (454)
36 2id5_A Lingo-1, leucine rich r 100.0 3.9E-27 1.3E-31 272.0 26.7 295 584-903 30-333 (477)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-26 5.3E-31 272.4 30.0 373 551-947 29-512 (562)
38 3o6n_A APL1; leucine-rich repe 99.9 9.9E-27 3.4E-31 260.9 25.2 298 587-921 46-349 (390)
39 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-26 6.3E-31 277.2 27.0 134 533-675 56-194 (635)
40 3o6n_A APL1; leucine-rich repe 99.9 4E-26 1.4E-30 256.0 27.4 305 603-947 40-354 (390)
41 3oja_B Anopheles plasmodium-re 99.9 3.9E-26 1.3E-30 270.3 26.6 301 587-903 52-358 (597)
42 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-25 4.8E-30 255.2 27.4 305 547-901 36-350 (457)
43 2id5_A Lingo-1, leucine rich r 99.9 1E-25 3.5E-30 260.0 26.5 309 588-923 13-332 (477)
44 3h16_A TIR protein; bacteria T 99.9 2E-28 7E-33 231.8 3.0 119 7-126 17-135 (154)
45 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-25 5.2E-30 254.9 26.5 328 533-908 46-392 (457)
46 3oja_B Anopheles plasmodium-re 99.9 8.8E-26 3E-30 267.4 23.5 306 551-880 49-358 (597)
47 1xku_A Decorin; proteoglycan, 99.9 3.6E-24 1.2E-28 234.1 27.2 262 609-902 32-305 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-24 4.5E-29 237.8 22.7 262 609-903 34-307 (332)
49 1xku_A Decorin; proteoglycan, 99.9 8.2E-24 2.8E-28 231.3 25.7 280 588-901 33-330 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 5.7E-24 2E-28 232.7 23.9 220 586-830 54-278 (332)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-24 5.3E-29 234.4 15.4 185 737-926 117-306 (313)
52 1ogq_A PGIP-2, polygalacturona 99.9 6.5E-25 2.2E-29 237.4 11.8 248 609-907 51-308 (313)
53 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-23 1.4E-27 247.9 28.4 375 533-922 80-578 (635)
54 3g06_A SSPH2 (leucine-rich rep 99.9 4.7E-23 1.6E-27 241.0 26.3 258 553-880 40-297 (622)
55 4fcg_A Uncharacterized protein 99.9 3E-23 1E-27 225.7 19.4 127 768-899 182-310 (328)
56 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.2E-27 236.7 25.3 262 586-907 40-301 (622)
57 2z80_A TOLL-like receptor 2, v 99.9 1.7E-23 5.7E-28 231.1 15.3 271 591-907 36-318 (353)
58 3ub2_A TOLL/interleukin-1 rece 99.9 1.1E-25 3.9E-30 208.7 -2.3 136 4-144 4-145 (146)
59 4fcg_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 222.2 19.2 166 734-919 139-309 (328)
60 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-25 6.2E-30 257.1 -3.1 354 549-922 24-438 (461)
61 3zyj_A Leucine-rich repeat-con 99.9 6.8E-22 2.3E-26 225.1 24.0 242 588-880 45-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 7.8E-22 2.7E-26 225.4 23.7 242 588-880 56-303 (452)
63 2z66_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 215.0 20.2 164 736-903 92-261 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-23 3.9E-28 228.4 6.8 262 610-906 12-278 (317)
65 2z66_A Variable lymphocyte rec 99.9 8.1E-23 2.8E-27 220.9 13.3 241 590-880 11-261 (306)
66 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-24 3.9E-29 250.4 -4.5 359 585-944 2-439 (461)
67 1wwl_A Monocyte differentiatio 99.9 7E-23 2.4E-27 221.6 8.0 244 606-903 41-309 (312)
68 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-21 6E-26 207.9 16.9 136 741-903 101-238 (285)
69 3zyj_A Leucine-rich repeat-con 99.9 8.4E-21 2.9E-25 216.1 23.2 156 741-901 132-290 (440)
70 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 4E-26 216.3 15.1 270 607-927 30-317 (353)
71 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-21 4.6E-26 208.8 13.5 220 589-857 14-238 (285)
72 3zyi_A Leucine-rich repeat-con 99.9 2.2E-20 7.4E-25 213.4 23.1 225 583-829 72-303 (452)
73 3oja_A Leucine-rich immune mol 99.9 9.6E-22 3.3E-26 225.7 11.7 234 630-898 33-270 (487)
74 2js7_A Myeloid differentiation 99.8 3.4E-22 1.2E-26 188.8 3.9 102 6-109 12-117 (160)
75 1wwl_A Monocyte differentiatio 99.8 1.2E-21 4.2E-26 211.8 8.4 240 587-881 44-310 (312)
76 2j67_A TOLL like receptor 10; 99.8 5.8E-22 2E-26 190.0 4.4 102 6-109 31-136 (178)
77 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-22 1.3E-26 216.4 3.2 236 606-877 32-272 (317)
78 1fyx_A TOLL-like receptor 2; b 99.8 3.4E-22 1.2E-26 187.0 1.9 100 7-108 2-105 (149)
79 1t3g_A X-linked interleukin-1 99.8 5.8E-21 2E-25 180.1 7.1 102 9-110 1-115 (159)
80 3ogk_B Coronatine-insensitive 99.8 9.4E-22 3.2E-26 233.8 1.4 367 548-926 107-527 (592)
81 2xwt_C Thyrotropin receptor; s 99.8 1E-19 3.6E-24 188.5 15.5 208 711-924 20-239 (239)
82 3ogk_B Coronatine-insensitive 99.8 2.7E-21 9.2E-26 229.9 3.3 292 607-902 191-525 (592)
83 3oja_A Leucine-rich immune mol 99.8 2.1E-20 7.3E-25 214.5 9.3 233 607-875 33-270 (487)
84 2z62_A TOLL-like receptor 4, v 99.8 5.5E-19 1.9E-23 187.5 19.0 163 741-907 72-241 (276)
85 2z62_A TOLL-like receptor 4, v 99.8 1.5E-18 5E-23 184.3 19.1 216 592-880 13-237 (276)
86 2o6q_A Variable lymphocyte rec 99.8 5.5E-18 1.9E-22 179.0 21.9 190 714-907 28-222 (270)
87 2p1m_B Transport inhibitor res 99.8 9.8E-21 3.4E-25 225.1 -0.9 377 546-923 59-518 (594)
88 1p9a_G Platelet glycoprotein I 99.8 7.1E-18 2.4E-22 179.6 21.2 202 627-880 6-208 (290)
89 1p9a_G Platelet glycoprotein I 99.8 8E-18 2.7E-22 179.2 21.2 201 674-904 6-209 (290)
90 2o6q_A Variable lymphocyte rec 99.8 1.6E-17 5.5E-22 175.4 22.8 135 742-880 82-218 (270)
91 2ca6_A RAN GTPase-activating p 99.8 7.4E-20 2.5E-24 204.6 4.5 259 609-906 10-319 (386)
92 1h6u_A Internalin H; cell adhe 99.8 5.2E-18 1.8E-22 182.6 17.4 216 607-883 18-233 (308)
93 3rfs_A Internalin B, repeat mo 99.8 1.7E-17 5.9E-22 175.3 18.5 196 723-929 42-240 (272)
94 2ast_B S-phase kinase-associat 99.7 5.8E-19 2E-23 193.4 7.1 220 610-877 49-282 (336)
95 4glp_A Monocyte differentiatio 99.7 1.2E-18 4.2E-23 188.1 9.0 155 742-903 142-307 (310)
96 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.7E-22 173.3 15.6 153 741-902 76-238 (239)
97 3m19_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 170.5 19.0 177 723-905 15-194 (251)
98 1h6u_A Internalin H; cell adhe 99.7 3.4E-17 1.2E-21 176.2 18.8 189 699-902 39-229 (308)
99 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.6E-22 174.9 16.0 226 631-914 19-246 (272)
100 4ay9_X Follicle-stimulating ho 99.7 1.8E-17 6.3E-22 182.1 14.9 225 713-941 20-255 (350)
101 2p1m_B Transport inhibitor res 99.7 4.6E-19 1.6E-23 210.7 1.7 354 586-944 66-518 (594)
102 4ay9_X Follicle-stimulating ho 99.7 5.1E-17 1.8E-21 178.5 16.8 237 589-899 12-255 (350)
103 2ast_B S-phase kinase-associat 99.7 4.8E-18 1.6E-22 186.2 7.7 185 737-926 110-307 (336)
104 2ca6_A RAN GTPase-activating p 99.7 2.8E-19 9.6E-24 199.8 -2.2 255 606-899 30-339 (386)
105 4glp_A Monocyte differentiatio 99.7 2.7E-17 9.1E-22 177.6 10.3 200 744-945 90-307 (310)
106 3goz_A Leucine-rich repeat-con 99.7 9.9E-19 3.4E-23 193.3 -1.0 136 745-880 138-297 (362)
107 3goz_A Leucine-rich repeat-con 99.7 7.4E-18 2.5E-22 186.2 3.7 165 741-905 104-299 (362)
108 3cvr_A Invasion plasmid antige 99.7 3.4E-16 1.2E-20 180.7 17.6 181 679-907 60-247 (571)
109 3m19_A Variable lymphocyte rec 99.7 8.7E-16 3E-20 160.1 18.8 156 722-881 35-193 (251)
110 1h6t_A Internalin B; cell adhe 99.7 9.5E-16 3.3E-20 163.3 16.8 168 722-903 46-213 (291)
111 3cvr_A Invasion plasmid antige 99.6 1E-15 3.5E-20 176.7 16.9 136 732-889 110-253 (571)
112 1h6t_A Internalin B; cell adhe 99.6 1.5E-15 5E-20 161.8 14.5 184 724-922 26-211 (291)
113 1m9s_A Internalin B; cell inva 99.6 2.9E-15 9.8E-20 175.1 17.8 168 723-904 44-211 (605)
114 4ezg_A Putative uncharacterize 99.6 9.8E-16 3.3E-20 153.1 11.5 152 741-902 40-193 (197)
115 2qen_A Walker-type ATPase; unk 99.6 1.3E-14 4.6E-19 159.6 21.0 293 179-493 5-349 (350)
116 2o6s_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 151.6 13.9 172 726-909 11-184 (208)
117 2xot_A Amphoterin-induced prot 99.6 2.3E-15 7.8E-20 166.0 14.1 173 725-903 21-202 (361)
118 1dce_A Protein (RAB geranylger 99.6 8.5E-18 2.9E-22 195.3 -7.6 214 606-897 347-567 (567)
119 2fna_A Conserved hypothetical 99.6 1.8E-14 6E-19 159.2 19.3 294 179-492 6-356 (357)
120 1xeu_A Internalin C; cellular 99.6 3.3E-15 1.1E-19 156.4 12.7 168 722-904 19-186 (263)
121 2v9t_B SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 148.0 15.5 150 725-880 14-165 (220)
122 1m9s_A Internalin B; cell inva 99.6 6.1E-15 2.1E-19 172.3 15.0 186 723-923 22-209 (605)
123 4ezg_A Putative uncharacterize 99.6 4.2E-15 1.4E-19 148.5 11.2 150 721-880 43-194 (197)
124 1dce_A Protein (RAB geranylger 99.6 6.2E-17 2.1E-21 188.1 -3.2 187 723-917 350-566 (567)
125 3e6j_A Variable lymphocyte rec 99.6 2.6E-14 9E-19 146.3 15.8 152 724-904 21-173 (229)
126 2v70_A SLIT-2, SLIT homolog 2 99.6 3E-14 1E-18 144.7 15.6 150 725-880 14-166 (220)
127 2o6s_A Variable lymphocyte rec 99.6 2E-14 7E-19 145.0 13.3 161 721-891 27-190 (208)
128 3e6j_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 143.6 16.5 147 771-925 21-173 (229)
129 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.8E-18 139.2 15.8 150 748-904 14-166 (220)
130 1w5s_A Origin recognition comp 99.5 1.7E-13 5.7E-18 154.5 17.4 279 184-478 20-371 (412)
131 1xeu_A Internalin C; cellular 99.5 3.3E-14 1.1E-18 148.8 9.9 142 728-883 47-188 (263)
132 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.7E-18 152.6 12.1 163 714-880 30-202 (361)
133 2v70_A SLIT-2, SLIT homolog 2 99.5 3.9E-13 1.3E-17 136.5 15.1 133 722-858 32-167 (220)
134 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.4E-18 133.8 9.8 106 790-900 46-157 (168)
135 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.1E-18 132.3 10.3 136 745-885 24-165 (168)
136 4b8c_D Glucose-repressible alc 99.4 3.7E-14 1.3E-18 170.2 4.7 190 723-921 174-369 (727)
137 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7.3E-18 129.3 8.1 125 769-898 17-148 (149)
138 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-11 6.1E-16 136.3 24.3 276 185-478 19-339 (384)
139 4b8c_D Glucose-repressible alc 99.4 1.4E-13 4.8E-18 165.1 4.1 189 745-942 173-369 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-12 4.9E-17 127.3 9.5 129 767-901 17-151 (176)
141 2je0_A Acidic leucine-rich nuc 99.3 1.5E-12 5.1E-17 123.4 8.4 125 746-875 18-148 (149)
142 3sb4_A Hypothetical leucine ri 99.3 6E-12 2E-16 136.7 14.3 124 768-897 201-328 (329)
143 1w8a_A SLIT protein; signaling 99.3 9E-12 3.1E-16 123.4 13.2 127 772-905 11-141 (192)
144 1w8a_A SLIT protein; signaling 99.3 8.2E-12 2.8E-16 123.7 12.8 127 725-880 11-139 (192)
145 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.9E-16 121.9 14.3 107 793-903 31-139 (193)
146 2qby_A CDC6 homolog 1, cell di 99.3 3.2E-11 1.1E-15 134.5 17.5 280 183-478 17-348 (386)
147 1a9n_A U2A', U2A'; complex (nu 99.3 2.7E-12 9.3E-17 125.3 7.1 134 741-883 15-156 (176)
148 2v1u_A Cell division control p 99.3 1.5E-10 5E-15 129.1 21.4 277 184-478 17-351 (387)
149 1ds9_A Outer arm dynein; leuci 99.2 9.8E-14 3.3E-18 138.6 -5.8 147 742-896 15-180 (198)
150 1njg_A DNA polymerase III subu 99.2 7.3E-11 2.5E-15 122.4 15.3 198 183-394 20-230 (250)
151 2wfh_A SLIT homolog 2 protein 99.2 5E-11 1.7E-15 118.0 13.4 124 727-857 15-139 (193)
152 3sb4_A Hypothetical leucine ri 99.2 3.4E-11 1.2E-15 130.8 12.8 214 630-874 100-328 (329)
153 2o6r_A Variable lymphocyte rec 99.2 8.1E-11 2.8E-15 115.0 13.5 126 725-880 10-137 (177)
154 1fnn_A CDC6P, cell division co 99.2 3.4E-10 1.2E-14 126.2 19.7 301 184-499 15-387 (389)
155 2o6r_A Variable lymphocyte rec 99.2 1.6E-10 5.6E-15 112.8 14.2 130 771-907 9-141 (177)
156 4fdw_A Leucine rich hypothetic 99.1 1.3E-09 4.5E-14 120.7 20.6 126 745-878 248-381 (401)
157 2chg_A Replication factor C sm 99.1 5.2E-10 1.8E-14 114.0 15.5 188 182-391 13-203 (226)
158 4fdw_A Leucine rich hypothetic 99.1 2.9E-09 9.8E-14 118.0 22.6 165 730-902 188-357 (401)
159 1ds9_A Outer arm dynein; leuci 99.1 4.1E-13 1.4E-17 134.1 -7.9 134 767-907 16-157 (198)
160 4fs7_A Uncharacterized protein 99.1 6.1E-09 2.1E-13 116.0 23.1 309 541-899 59-375 (394)
161 2r9u_A Variable lymphocyte rec 99.1 7E-10 2.4E-14 107.6 12.2 102 796-903 15-118 (174)
162 3g39_A Variable lymphocyte rec 99.1 8.7E-10 3E-14 106.5 12.1 103 795-903 11-115 (170)
163 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 105.5 10.7 102 724-827 11-113 (170)
164 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 105.8 10.8 101 725-827 15-116 (174)
165 3un9_A NLR family member X1; l 98.9 6.6E-11 2.3E-15 129.9 -1.1 61 841-901 180-250 (372)
166 1sxj_B Activator 1 37 kDa subu 98.9 1.8E-09 6.3E-14 116.8 8.8 186 183-392 18-210 (323)
167 3un9_A NLR family member X1; l 98.9 1.9E-10 6.4E-15 126.3 -1.4 160 723-882 73-254 (372)
168 4fs7_A Uncharacterized protein 98.8 1.5E-07 5.2E-12 104.6 20.1 305 541-895 82-393 (394)
169 1iqp_A RFCS; clamp loader, ext 98.8 1.8E-08 6.1E-13 109.2 12.1 187 182-392 21-212 (327)
170 1hqc_A RUVB; extended AAA-ATPa 98.8 3.1E-07 1.1E-11 99.1 21.1 262 182-488 8-308 (324)
171 2ifg_A High affinity nerve gro 98.7 3.2E-08 1.1E-12 108.2 10.1 92 784-880 23-116 (347)
172 4gt6_A Cell surface protein; l 98.7 4E-06 1.4E-10 93.0 26.7 112 541-663 51-169 (394)
173 2ifg_A High affinity nerve gro 98.7 5.1E-08 1.7E-12 106.5 10.6 103 727-830 13-117 (347)
174 1jr3_A DNA polymerase III subu 98.7 2.5E-07 8.6E-12 102.1 16.0 196 183-392 13-221 (373)
175 2chq_A Replication factor C sm 98.6 2.2E-07 7.5E-12 100.1 14.0 184 182-390 13-202 (319)
176 2ra8_A Uncharacterized protein 98.6 2.8E-08 9.6E-13 107.8 6.9 161 738-901 132-318 (362)
177 3te6_A Regulatory protein SIR3 98.6 1.8E-07 6.3E-12 98.3 12.6 164 187-360 21-211 (318)
178 2ra8_A Uncharacterized protein 98.6 2.5E-08 8.5E-13 108.3 4.2 156 740-901 167-341 (362)
179 1jbk_A CLPB protein; beta barr 98.5 3.3E-07 1.1E-11 90.4 11.0 51 183-235 19-69 (195)
180 4gt6_A Cell surface protein; l 98.5 6.2E-06 2.1E-10 91.5 21.4 107 787-900 259-367 (394)
181 3h4m_A Proteasome-activating n 98.5 7.8E-07 2.7E-11 93.9 13.2 181 183-390 14-229 (285)
182 3bos_A Putative DNA replicatio 98.5 4.9E-07 1.7E-11 92.9 10.5 174 184-392 26-217 (242)
183 1sxj_A Activator 1 95 kDa subu 98.4 2.6E-06 8.8E-11 97.7 16.8 190 183-391 36-252 (516)
184 1sxj_D Activator 1 41 kDa subu 98.4 2.4E-06 8.2E-11 93.4 15.8 196 182-391 33-234 (353)
185 3d8b_A Fidgetin-like protein 1 98.4 5.7E-06 1.9E-10 90.0 17.8 202 162-393 64-296 (357)
186 2z4s_A Chromosomal replication 98.4 1.6E-06 5.6E-11 96.9 12.3 179 186-389 105-303 (440)
187 1d2n_A N-ethylmaleimide-sensit 98.3 9.6E-06 3.3E-10 84.8 17.3 200 185-412 32-263 (272)
188 4h09_A Hypothetical leucine ri 98.3 6.2E-05 2.1E-09 82.9 24.7 128 763-898 211-341 (379)
189 3b9p_A CG5977-PA, isoform A; A 98.3 9.7E-06 3.3E-10 86.0 17.3 184 181-392 16-233 (297)
190 1sxj_E Activator 1 40 kDa subu 98.3 2E-06 6.7E-11 94.1 12.1 199 182-390 10-235 (354)
191 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.7E-05 5.7E-10 82.4 18.6 182 184-390 4-220 (262)
192 3eie_A Vacuolar protein sortin 98.3 9E-06 3.1E-10 87.2 16.7 184 182-392 14-228 (322)
193 3syl_A Protein CBBX; photosynt 98.3 6.5E-06 2.2E-10 88.0 15.2 148 187-361 32-218 (309)
194 3pvs_A Replication-associated 98.3 5.2E-06 1.8E-10 92.6 14.9 178 182-389 22-212 (447)
195 3uk6_A RUVB-like 2; hexameric 98.3 1.1E-05 3.7E-10 88.6 17.1 197 185-391 43-302 (368)
196 3pfi_A Holliday junction ATP-d 98.3 4.3E-06 1.5E-10 90.6 13.2 173 183-391 26-226 (338)
197 4h09_A Hypothetical leucine ri 98.3 5.9E-05 2E-09 83.1 22.5 140 741-889 213-355 (379)
198 2qp9_X Vacuolar protein sortin 98.3 1.4E-05 4.8E-10 86.7 16.6 181 183-392 48-261 (355)
199 1io0_A Tropomodulin; LRR prote 98.3 1.8E-07 6.1E-12 91.5 1.4 58 843-900 92-161 (185)
200 1xwi_A SKD1 protein; VPS4B, AA 98.3 3.3E-05 1.1E-09 82.5 19.2 182 184-392 10-223 (322)
201 3u61_B DNA polymerase accessor 98.2 1.9E-05 6.3E-10 85.0 16.5 175 182-387 22-211 (324)
202 1l8q_A Chromosomal replication 98.2 1.3E-05 4.6E-10 86.1 15.4 176 185-386 10-202 (324)
203 3vfd_A Spastin; ATPase, microt 98.2 3.1E-05 1.1E-09 85.4 17.8 184 182-392 111-326 (389)
204 2zan_A Vacuolar protein sortin 98.1 4.5E-05 1.5E-09 85.4 18.0 184 182-392 130-345 (444)
205 1io0_A Tropomodulin; LRR prote 98.1 3.4E-07 1.2E-11 89.4 -0.0 92 789-880 61-164 (185)
206 2p65_A Hypothetical protein PF 98.1 1.7E-05 5.9E-10 77.4 12.2 50 184-235 20-69 (187)
207 3cf0_A Transitional endoplasmi 98.0 3.7E-05 1.3E-09 81.4 13.6 152 184-360 13-199 (301)
208 1a5t_A Delta prime, HOLB; zinc 98.0 0.00016 5.5E-09 77.7 17.3 182 192-392 8-205 (334)
209 1sxj_C Activator 1 40 kDa subu 98.0 0.00013 4.5E-09 78.8 16.6 182 184-388 23-208 (340)
210 4b4t_J 26S protease regulatory 98.0 0.00011 3.9E-09 79.0 15.6 173 184-385 146-354 (405)
211 3e4g_A ATP synthase subunit S, 97.9 6E-06 2E-10 78.2 4.9 86 816-905 61-154 (176)
212 3n70_A Transport activator; si 97.9 1.2E-05 4.1E-10 74.8 6.5 47 187-233 2-48 (145)
213 4fcw_A Chaperone protein CLPB; 97.9 7.6E-05 2.6E-09 79.7 12.3 50 186-235 17-73 (311)
214 4b4t_L 26S protease subunit RP 97.8 0.00035 1.2E-08 76.6 16.8 172 185-385 180-387 (437)
215 3pxg_A Negative regulator of g 97.8 0.00014 4.8E-09 82.0 13.9 150 183-360 177-338 (468)
216 4b4t_H 26S protease regulatory 97.8 0.00044 1.5E-08 75.5 16.9 172 185-385 208-415 (467)
217 1ojl_A Transcriptional regulat 97.8 6.6E-05 2.2E-09 79.4 10.1 48 186-233 2-49 (304)
218 2r62_A Cell division protease 97.8 5.8E-05 2E-09 78.6 9.5 154 183-360 8-196 (268)
219 4b4t_M 26S protease regulatory 97.8 0.00021 7E-09 78.3 13.9 174 183-385 178-387 (434)
220 2bjv_A PSP operon transcriptio 97.8 5.2E-05 1.8E-09 78.8 8.9 49 186-234 6-54 (265)
221 3ec2_A DNA replication protein 97.7 0.00013 4.5E-09 70.6 11.0 26 209-234 38-63 (180)
222 1lv7_A FTSH; alpha/beta domain 97.7 0.00034 1.2E-08 72.2 14.7 55 182-236 8-72 (257)
223 3hu3_A Transitional endoplasmi 97.7 0.00015 5.2E-09 81.6 12.8 180 185-391 203-414 (489)
224 3e4g_A ATP synthase subunit S, 97.7 2.1E-05 7.2E-10 74.5 4.8 95 736-830 52-153 (176)
225 3rw6_A Nuclear RNA export fact 97.7 5.5E-06 1.9E-10 84.9 0.7 55 841-896 193-257 (267)
226 4b4t_K 26S protease regulatory 97.7 0.00024 8.3E-09 77.7 13.1 53 185-237 171-234 (428)
227 2w58_A DNAI, primosome compone 97.7 0.0001 3.6E-09 72.9 9.4 60 184-243 23-88 (202)
228 4b4t_I 26S protease regulatory 97.7 0.00036 1.2E-08 75.4 14.0 172 185-385 181-388 (437)
229 1qvr_A CLPB protein; coiled co 97.6 0.00021 7.3E-09 87.1 13.0 51 183-235 167-217 (854)
230 1ofh_A ATP-dependent HSL prote 97.6 0.00018 6E-09 76.7 10.7 50 186-235 15-76 (310)
231 2ce7_A Cell division protein F 97.5 0.0011 3.9E-08 73.8 16.0 175 184-385 14-221 (476)
232 1r6b_X CLPA protein; AAA+, N-t 97.5 0.0011 3.8E-08 80.0 17.0 156 183-360 183-362 (758)
233 3pxi_A Negative regulator of g 97.5 0.00055 1.9E-08 82.5 14.0 150 183-360 177-338 (758)
234 3co5_A Putative two-component 97.5 5E-05 1.7E-09 70.4 3.6 48 186-233 4-51 (143)
235 3rw6_A Nuclear RNA export fact 97.5 9.3E-05 3.2E-09 75.7 5.3 67 841-908 167-238 (267)
236 2gno_A DNA polymerase III, gam 97.4 0.00089 3E-08 70.4 12.7 146 190-360 1-152 (305)
237 2c9o_A RUVB-like 1; hexameric 97.4 0.002 6.9E-08 72.3 16.4 50 185-234 36-88 (456)
238 1in4_A RUVB, holliday junction 97.4 0.0011 3.9E-08 71.0 13.6 172 184-389 23-220 (334)
239 3pxi_A Negative regulator of g 97.3 0.00061 2.1E-08 82.1 11.6 148 186-360 491-675 (758)
240 3m6a_A ATP-dependent protease 97.2 0.0025 8.5E-08 73.1 14.6 52 187-238 82-137 (543)
241 1eiw_A Hypothetical protein MT 97.2 0.00041 1.4E-08 59.6 5.8 73 9-105 3-75 (111)
242 3cf2_A TER ATPase, transitiona 97.2 0.00098 3.3E-08 78.8 10.9 171 186-385 204-407 (806)
243 2r44_A Uncharacterized protein 97.2 0.0034 1.2E-07 67.3 14.6 49 185-237 26-74 (331)
244 2kjq_A DNAA-related protein; s 97.1 0.00086 2.9E-08 62.2 7.6 28 208-235 35-62 (149)
245 2x8a_A Nuclear valosin-contain 97.1 0.0039 1.3E-07 64.5 13.1 151 186-360 10-191 (274)
246 1ixz_A ATP-dependent metallopr 97.1 0.0057 1.9E-07 62.7 14.3 51 184-234 14-74 (254)
247 3t15_A Ribulose bisphosphate c 97.1 0.0024 8.2E-08 67.0 11.2 30 207-236 34-63 (293)
248 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00018 6.2E-09 69.4 2.2 89 812-900 66-167 (197)
249 1iy2_A ATP-dependent metallopr 97.0 0.0094 3.2E-07 62.0 15.5 52 183-234 37-98 (278)
250 2qgz_A Helicase loader, putati 96.9 0.0012 4.1E-08 69.7 7.6 49 195-243 137-187 (308)
251 2dhr_A FTSH; AAA+ protein, hex 96.9 0.014 4.7E-07 65.5 15.6 173 182-385 27-236 (499)
252 1um8_A ATP-dependent CLP prote 96.8 0.0046 1.6E-07 67.6 11.5 28 209-236 72-99 (376)
253 1ypw_A Transitional endoplasmi 96.8 0.0048 1.6E-07 74.2 11.6 53 185-237 203-266 (806)
254 1qvr_A CLPB protein; coiled co 96.7 0.0042 1.4E-07 75.7 10.4 48 187-234 559-613 (854)
255 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0012 4.3E-08 79.5 5.3 49 186-234 458-513 (758)
256 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00073 2.5E-08 65.2 1.6 65 742-806 38-111 (197)
257 2cvh_A DNA repair and recombin 96.5 0.0055 1.9E-07 61.2 8.0 45 197-244 8-52 (220)
258 1zu4_A FTSY; GTPase, signal re 96.3 0.012 4.1E-07 62.1 10.0 36 208-243 104-139 (320)
259 3hyn_A Putative signal transdu 96.2 0.018 6E-07 53.1 9.0 103 11-118 6-131 (189)
260 3rfe_A Platelet glycoprotein I 96.2 0.0079 2.7E-07 54.1 6.5 55 847-903 11-68 (130)
261 3dzd_A Transcriptional regulat 96.0 0.36 1.2E-05 52.0 20.1 48 185-232 128-175 (368)
262 1g5t_A COB(I)alamin adenosyltr 95.9 0.015 5.2E-07 55.7 7.6 117 210-328 29-163 (196)
263 3cf2_A TER ATPase, transitiona 95.9 0.011 3.9E-07 69.8 8.1 53 185-237 476-539 (806)
264 1vma_A Cell division protein F 95.9 0.029 9.8E-07 58.7 10.3 45 192-236 81-131 (306)
265 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.01 3.4E-07 61.7 6.5 24 209-232 123-146 (331)
266 1ye8_A Protein THEP1, hypothet 95.9 0.071 2.4E-06 50.8 12.2 24 211-234 2-25 (178)
267 2eyu_A Twitching motility prot 95.9 0.0025 8.5E-08 65.3 1.9 111 208-331 24-136 (261)
268 3jvv_A Twitching mobility prot 95.8 0.0028 9.6E-08 68.0 2.3 111 210-332 124-235 (356)
269 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.013 4.4E-07 59.0 6.7 35 209-243 23-57 (235)
270 1u0j_A DNA replication protein 95.7 0.048 1.6E-06 55.1 10.3 38 195-232 90-127 (267)
271 3e70_C DPA, signal recognition 95.5 0.038 1.3E-06 58.4 9.5 30 207-236 127-156 (328)
272 1j8m_F SRP54, signal recogniti 95.5 0.033 1.1E-06 58.0 8.8 35 209-243 98-132 (297)
273 3dm5_A SRP54, signal recogniti 95.5 0.049 1.7E-06 59.6 10.3 29 208-236 99-127 (443)
274 3hws_A ATP-dependent CLP prote 95.4 0.012 4E-07 64.0 5.3 48 188-235 17-77 (363)
275 3c8u_A Fructokinase; YP_612366 95.3 0.016 5.5E-07 57.2 5.5 40 195-234 8-47 (208)
276 1rz3_A Hypothetical protein rb 95.3 0.022 7.6E-07 55.8 6.5 44 191-234 3-47 (201)
277 1qhx_A CPT, protein (chloramph 95.3 0.0081 2.8E-07 57.6 3.1 25 210-234 4-28 (178)
278 3umf_A Adenylate kinase; rossm 95.2 0.015 5.2E-07 57.3 4.9 27 207-233 27-53 (217)
279 2xxa_A Signal recognition part 95.2 0.088 3E-06 57.9 11.2 43 194-236 78-127 (433)
280 3hr8_A Protein RECA; alpha and 95.1 0.049 1.7E-06 58.0 8.8 50 195-244 46-96 (356)
281 2b8t_A Thymidine kinase; deoxy 95.1 0.013 4.4E-07 58.0 4.0 35 209-243 12-46 (223)
282 3sr0_A Adenylate kinase; phosp 95.1 0.021 7.2E-07 55.9 5.4 23 211-233 2-24 (206)
283 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.9E-07 56.1 3.4 25 210-234 2-26 (173)
284 1rj9_A FTSY, signal recognitio 95.0 0.05 1.7E-06 56.9 8.4 29 208-236 101-129 (304)
285 2orw_A Thymidine kinase; TMTK, 94.9 0.008 2.7E-07 57.9 1.7 25 210-234 4-28 (184)
286 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5.2E-07 56.9 3.7 26 209-234 25-50 (199)
287 1odf_A YGR205W, hypothetical 3 94.9 0.03 1E-06 58.1 6.1 30 206-235 28-57 (290)
288 3b9q_A Chloroplast SRP recepto 94.8 0.077 2.6E-06 55.4 9.1 28 208-235 99-126 (302)
289 2ewv_A Twitching motility prot 94.8 0.013 4.3E-07 63.5 3.2 111 208-330 135-246 (372)
290 2ga8_A Hypothetical 39.9 kDa p 94.8 0.025 8.6E-07 59.6 5.3 48 190-237 3-52 (359)
291 1jr3_D DNA polymerase III, del 94.8 0.34 1.2E-05 51.7 14.6 156 208-390 17-183 (343)
292 3trf_A Shikimate kinase, SK; a 94.8 0.015 5.1E-07 56.1 3.4 25 209-233 5-29 (185)
293 3kl4_A SRP54, signal recogniti 94.8 0.09 3.1E-06 57.5 9.8 29 208-236 96-124 (433)
294 2og2_A Putative signal recogni 94.7 0.068 2.3E-06 57.1 8.6 28 208-235 156-183 (359)
295 2px0_A Flagellar biosynthesis 94.7 0.079 2.7E-06 55.2 8.8 27 208-234 104-130 (296)
296 1ex7_A Guanylate kinase; subst 94.7 0.013 4.4E-07 56.2 2.5 29 210-238 2-30 (186)
297 2yhs_A FTSY, cell division pro 94.6 0.077 2.6E-06 58.6 8.7 29 208-236 292-320 (503)
298 3tlx_A Adenylate kinase 2; str 94.5 0.029 1E-06 56.8 4.9 40 194-233 14-53 (243)
299 1sky_E F1-ATPase, F1-ATP synth 94.5 0.047 1.6E-06 59.9 6.7 31 210-240 152-182 (473)
300 3lw7_A Adenylate kinase relate 94.4 0.018 6.1E-07 54.9 3.0 20 210-229 2-21 (179)
301 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.031 1E-06 62.7 5.2 44 186-233 22-65 (500)
302 1nks_A Adenylate kinase; therm 94.4 0.031 1.1E-06 54.1 4.7 26 210-235 2-27 (194)
303 1kgd_A CASK, peripheral plasma 94.4 0.02 6.8E-07 55.0 3.1 26 209-234 5-30 (180)
304 3io5_A Recombination and repai 94.4 0.047 1.6E-06 56.4 5.9 34 211-244 30-65 (333)
305 1ly1_A Polynucleotide kinase; 94.3 0.023 7.9E-07 54.4 3.6 22 210-231 3-24 (181)
306 2rhm_A Putative kinase; P-loop 94.3 0.032 1.1E-06 54.2 4.6 26 208-233 4-29 (193)
307 1g8p_A Magnesium-chelatase 38 94.3 0.021 7.2E-07 61.6 3.6 49 184-234 22-70 (350)
308 3uie_A Adenylyl-sulfate kinase 94.3 0.034 1.2E-06 54.3 4.7 27 208-234 24-50 (200)
309 1ny5_A Transcriptional regulat 94.3 0.51 1.7E-05 51.2 14.5 47 186-232 137-183 (387)
310 2cbz_A Multidrug resistance-as 94.3 0.082 2.8E-06 53.1 7.5 24 209-232 31-54 (237)
311 3bh0_A DNAB-like replicative h 94.2 0.093 3.2E-06 55.3 8.3 64 195-266 55-118 (315)
312 1zuh_A Shikimate kinase; alpha 94.2 0.025 8.5E-07 53.5 3.5 27 208-234 6-32 (168)
313 1kag_A SKI, shikimate kinase I 94.2 0.019 6.4E-07 54.7 2.6 25 210-234 5-29 (173)
314 3fwy_A Light-independent proto 94.2 0.033 1.1E-06 58.5 4.6 30 207-236 46-75 (314)
315 3iij_A Coilin-interacting nucl 94.2 0.02 6.7E-07 55.0 2.7 25 209-233 11-35 (180)
316 2v3c_C SRP54, signal recogniti 94.2 0.083 2.8E-06 58.1 8.0 28 209-236 99-126 (432)
317 1zp6_A Hypothetical protein AT 94.1 0.029 9.8E-07 54.4 3.7 25 208-232 8-32 (191)
318 1xjc_A MOBB protein homolog; s 94.1 0.035 1.2E-06 52.1 4.1 29 208-236 3-31 (169)
319 1via_A Shikimate kinase; struc 94.1 0.022 7.5E-07 54.4 2.8 24 211-234 6-29 (175)
320 1v5w_A DMC1, meiotic recombina 94.1 0.11 3.8E-06 55.5 8.6 48 197-244 110-163 (343)
321 3ice_A Transcription terminati 94.0 0.056 1.9E-06 57.3 5.8 29 209-237 174-202 (422)
322 1knq_A Gluconate kinase; ALFA/ 94.0 0.04 1.4E-06 52.5 4.5 26 208-233 7-32 (175)
323 1tue_A Replication protein E1; 94.0 0.042 1.4E-06 52.9 4.4 42 193-235 43-84 (212)
324 3t61_A Gluconokinase; PSI-biol 94.0 0.023 8E-07 55.7 2.8 25 209-233 18-42 (202)
325 2ze6_A Isopentenyl transferase 94.0 0.03 1E-06 57.0 3.7 25 210-234 2-26 (253)
326 1kht_A Adenylate kinase; phosp 94.0 0.029 9.9E-07 54.3 3.4 25 210-234 4-28 (192)
327 3tau_A Guanylate kinase, GMP k 93.9 0.029 1E-06 55.2 3.3 28 208-235 7-34 (208)
328 3a00_A Guanylate kinase, GMP k 93.8 0.026 8.9E-07 54.5 2.8 29 210-238 2-30 (186)
329 3rfe_A Platelet glycoprotein I 93.8 0.058 2E-06 48.3 4.8 52 590-642 12-66 (130)
330 2yvu_A Probable adenylyl-sulfa 93.8 0.044 1.5E-06 52.8 4.4 28 208-235 12-39 (186)
331 2c95_A Adenylate kinase 1; tra 93.8 0.035 1.2E-06 54.0 3.7 25 209-233 9-33 (196)
332 2jaq_A Deoxyguanosine kinase; 93.8 0.032 1.1E-06 54.7 3.4 24 211-234 2-25 (205)
333 2iyv_A Shikimate kinase, SK; t 93.8 0.026 9E-07 54.3 2.7 25 210-234 3-27 (184)
334 1g41_A Heat shock protein HSLU 93.7 0.06 2E-06 59.0 5.5 52 186-237 15-78 (444)
335 2vli_A Antibiotic resistance p 93.7 0.027 9.2E-07 54.1 2.5 26 209-234 5-30 (183)
336 1e6c_A Shikimate kinase; phosp 93.6 0.03 1E-06 53.2 2.8 25 210-234 3-27 (173)
337 3ney_A 55 kDa erythrocyte memb 93.6 0.035 1.2E-06 53.6 3.1 27 208-234 18-44 (197)
338 4eun_A Thermoresistant glucoki 93.6 0.04 1.4E-06 53.9 3.6 26 208-233 28-53 (200)
339 1tev_A UMP-CMP kinase; ploop, 93.6 0.043 1.5E-06 53.3 3.8 25 209-233 3-27 (196)
340 1ukz_A Uridylate kinase; trans 93.6 0.044 1.5E-06 53.7 3.9 27 207-233 13-39 (203)
341 2bwj_A Adenylate kinase 5; pho 93.6 0.039 1.3E-06 53.8 3.5 25 210-234 13-37 (199)
342 3cm0_A Adenylate kinase; ATP-b 93.5 0.042 1.4E-06 52.9 3.7 24 210-233 5-28 (186)
343 1gvn_B Zeta; postsegregational 93.5 0.07 2.4E-06 55.4 5.5 26 208-233 32-57 (287)
344 1y63_A LMAJ004144AAA protein; 93.5 0.042 1.4E-06 52.8 3.6 25 208-232 9-33 (184)
345 2plr_A DTMP kinase, probable t 93.5 0.056 1.9E-06 53.3 4.6 27 210-236 5-31 (213)
346 2cdn_A Adenylate kinase; phosp 93.5 0.05 1.7E-06 53.2 4.1 25 209-233 20-44 (201)
347 3tqc_A Pantothenate kinase; bi 93.4 0.071 2.4E-06 55.9 5.4 46 189-234 70-117 (321)
348 1nn5_A Similar to deoxythymidy 93.4 0.056 1.9E-06 53.4 4.5 28 209-236 9-36 (215)
349 2pt5_A Shikimate kinase, SK; a 93.4 0.044 1.5E-06 51.7 3.6 24 211-234 2-25 (168)
350 2pt7_A CAG-ALFA; ATPase, prote 93.4 0.087 3E-06 55.8 6.2 103 210-330 172-277 (330)
351 2qor_A Guanylate kinase; phosp 93.4 0.036 1.2E-06 54.4 2.9 27 208-234 11-37 (204)
352 1uf9_A TT1252 protein; P-loop, 93.3 0.051 1.7E-06 53.1 3.9 26 207-232 6-31 (203)
353 3p32_A Probable GTPase RV1496/ 93.3 0.11 3.6E-06 56.0 6.7 41 195-235 65-105 (355)
354 2bdt_A BH3686; alpha-beta prot 93.3 0.046 1.6E-06 52.8 3.5 22 210-231 3-24 (189)
355 1qf9_A UMP/CMP kinase, protein 93.3 0.049 1.7E-06 52.7 3.7 25 209-233 6-30 (194)
356 1aky_A Adenylate kinase; ATP:A 93.2 0.045 1.5E-06 54.4 3.5 26 209-234 4-29 (220)
357 4a1f_A DNAB helicase, replicat 93.2 0.24 8.1E-06 52.3 9.1 65 195-267 33-97 (338)
358 2wwf_A Thymidilate kinase, put 93.2 0.052 1.8E-06 53.5 3.8 27 209-235 10-36 (212)
359 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.053 1.8E-06 55.5 3.9 26 209-234 4-29 (260)
360 2r6a_A DNAB helicase, replicat 93.1 0.58 2E-05 52.1 12.6 48 196-244 191-239 (454)
361 2qt1_A Nicotinamide riboside k 93.0 0.061 2.1E-06 52.9 4.0 26 207-232 19-44 (207)
362 2if2_A Dephospho-COA kinase; a 93.0 0.051 1.7E-06 53.3 3.4 22 210-231 2-23 (204)
363 2j37_W Signal recognition part 93.0 0.12 4.1E-06 57.8 6.7 29 208-236 100-128 (504)
364 1cke_A CK, MSSA, protein (cyti 93.0 0.054 1.8E-06 54.1 3.6 24 210-233 6-29 (227)
365 1puj_A YLQF, conserved hypothe 93.0 0.75 2.5E-05 47.3 12.3 24 208-231 119-142 (282)
366 3asz_A Uridine kinase; cytidin 93.0 0.067 2.3E-06 52.7 4.2 27 208-234 5-31 (211)
367 3tr0_A Guanylate kinase, GMP k 92.9 0.049 1.7E-06 53.4 3.1 24 210-233 8-31 (205)
368 1uj2_A Uridine-cytidine kinase 92.9 0.062 2.1E-06 54.7 3.9 28 207-234 20-47 (252)
369 2pbr_A DTMP kinase, thymidylat 92.8 0.06 2E-06 52.2 3.5 24 211-234 2-25 (195)
370 1zak_A Adenylate kinase; ATP:A 92.8 0.053 1.8E-06 54.0 3.1 26 209-234 5-30 (222)
371 2j41_A Guanylate kinase; GMP, 92.8 0.059 2E-06 52.8 3.5 25 209-233 6-30 (207)
372 4gp7_A Metallophosphoesterase; 92.7 0.048 1.6E-06 51.7 2.6 22 209-230 9-30 (171)
373 2bbw_A Adenylate kinase 4, AK4 92.7 0.062 2.1E-06 54.5 3.6 25 209-233 27-51 (246)
374 2dr3_A UPF0273 protein PH0284; 92.7 0.08 2.7E-06 53.6 4.5 37 208-244 22-58 (247)
375 1zd8_A GTP:AMP phosphotransfer 92.6 0.056 1.9E-06 54.0 3.1 25 209-233 7-31 (227)
376 2zr9_A Protein RECA, recombina 92.6 0.15 5.2E-06 54.4 6.7 50 195-244 46-96 (349)
377 2grj_A Dephospho-COA kinase; T 92.6 0.07 2.4E-06 51.5 3.7 25 208-232 11-35 (192)
378 2p5t_B PEZT; postsegregational 92.6 0.099 3.4E-06 53.2 4.9 27 208-234 31-57 (253)
379 2wsm_A Hydrogenase expression/ 92.5 0.086 2.9E-06 52.3 4.4 43 192-236 15-57 (221)
380 1jjv_A Dephospho-COA kinase; P 92.5 0.063 2.2E-06 52.7 3.3 22 210-231 3-24 (206)
381 1gtv_A TMK, thymidylate kinase 92.5 0.045 1.6E-06 54.1 2.2 25 211-235 2-26 (214)
382 3nwj_A ATSK2; P loop, shikimat 92.5 0.054 1.8E-06 54.8 2.8 25 210-234 49-73 (250)
383 3bgw_A DNAB-like replicative h 92.5 0.48 1.7E-05 52.3 10.7 48 195-243 184-231 (444)
384 2pez_A Bifunctional 3'-phospho 92.5 0.082 2.8E-06 50.5 4.0 26 209-234 5-30 (179)
385 2hf9_A Probable hydrogenase ni 92.5 0.12 3.9E-06 51.6 5.2 38 195-234 26-63 (226)
386 3fb4_A Adenylate kinase; psych 92.4 0.071 2.4E-06 52.8 3.6 23 211-233 2-24 (216)
387 2r2a_A Uncharacterized protein 92.3 0.3 1E-05 47.2 7.8 22 210-231 6-27 (199)
388 4e22_A Cytidylate kinase; P-lo 92.3 0.068 2.3E-06 54.4 3.3 26 209-234 27-52 (252)
389 2z0h_A DTMP kinase, thymidylat 92.3 0.075 2.6E-06 51.6 3.6 25 211-235 2-26 (197)
390 1u94_A RECA protein, recombina 92.3 0.096 3.3E-06 56.0 4.6 50 195-244 48-98 (356)
391 4a74_A DNA repair and recombin 92.3 0.088 3E-06 52.6 4.1 37 197-233 13-49 (231)
392 1lvg_A Guanylate kinase, GMP k 92.2 0.058 2E-06 52.6 2.6 25 210-234 5-29 (198)
393 2ffh_A Protein (FFH); SRP54, s 92.2 0.48 1.7E-05 51.7 10.0 29 208-236 97-125 (425)
394 2q6t_A DNAB replication FORK h 92.1 0.59 2E-05 51.8 11.0 65 195-267 187-252 (444)
395 1m7g_A Adenylylsulfate kinase; 92.1 0.098 3.3E-06 51.5 4.1 26 209-234 25-50 (211)
396 3dl0_A Adenylate kinase; phosp 92.1 0.074 2.5E-06 52.6 3.3 23 211-233 2-24 (216)
397 3r20_A Cytidylate kinase; stru 92.1 0.084 2.9E-06 52.5 3.5 26 209-234 9-34 (233)
398 3l0o_A Transcription terminati 92.0 0.22 7.6E-06 52.7 6.8 28 209-236 175-202 (427)
399 2f6r_A COA synthase, bifunctio 92.0 0.092 3.1E-06 54.4 3.9 25 207-231 73-97 (281)
400 3d3q_A TRNA delta(2)-isopenten 92.0 0.086 3E-06 55.4 3.6 25 210-234 8-32 (340)
401 3aez_A Pantothenate kinase; tr 91.9 0.088 3E-06 55.2 3.7 28 207-234 88-115 (312)
402 3ake_A Cytidylate kinase; CMP 91.9 0.094 3.2E-06 51.4 3.6 24 211-234 4-27 (208)
403 3be4_A Adenylate kinase; malar 91.8 0.079 2.7E-06 52.5 3.0 24 210-233 6-29 (217)
404 2jeo_A Uridine-cytidine kinase 91.8 0.1 3.5E-06 52.8 3.9 26 208-233 24-49 (245)
405 1ak2_A Adenylate kinase isoenz 91.8 0.099 3.4E-06 52.4 3.7 26 209-234 16-41 (233)
406 1np6_A Molybdopterin-guanine d 91.8 0.099 3.4E-06 49.5 3.5 27 209-235 6-32 (174)
407 3crm_A TRNA delta(2)-isopenten 91.7 0.087 3E-06 55.1 3.2 25 210-234 6-30 (323)
408 3k1j_A LON protease, ATP-depen 91.7 0.074 2.5E-06 61.8 3.0 48 185-236 40-87 (604)
409 1n0w_A DNA repair protein RAD5 91.7 0.094 3.2E-06 52.9 3.5 36 197-232 12-47 (243)
410 1znw_A Guanylate kinase, GMP k 91.7 0.083 2.8E-06 51.9 3.0 25 209-233 20-44 (207)
411 1htw_A HI0065; nucleotide-bind 91.6 0.1 3.4E-06 48.6 3.3 26 208-233 32-57 (158)
412 2r8r_A Sensor protein; KDPD, P 91.6 0.16 5.6E-06 49.7 4.9 30 210-239 7-37 (228)
413 2v54_A DTMP kinase, thymidylat 91.6 0.089 3E-06 51.4 3.1 25 209-233 4-28 (204)
414 3end_A Light-independent proto 91.6 0.13 4.4E-06 54.1 4.6 37 207-243 39-75 (307)
415 1xp8_A RECA protein, recombina 91.6 0.28 9.7E-06 52.5 7.2 52 193-244 57-109 (366)
416 1vht_A Dephospho-COA kinase; s 91.5 0.11 3.9E-06 51.4 3.8 23 209-231 4-26 (218)
417 3a8t_A Adenylate isopentenyltr 91.5 0.072 2.4E-06 55.9 2.4 26 209-234 40-65 (339)
418 1cp2_A CP2, nitrogenase iron p 91.5 0.14 4.8E-06 52.6 4.7 34 210-243 2-35 (269)
419 2f1r_A Molybdopterin-guanine d 91.4 0.078 2.7E-06 50.0 2.4 26 210-235 3-28 (171)
420 1a7j_A Phosphoribulokinase; tr 91.4 0.075 2.6E-06 55.2 2.4 27 208-234 4-30 (290)
421 1e4v_A Adenylate kinase; trans 91.4 0.11 3.8E-06 51.2 3.7 23 211-233 2-24 (214)
422 3upu_A ATP-dependent DNA helic 91.4 0.78 2.7E-05 51.2 10.9 27 210-236 46-72 (459)
423 1z6g_A Guanylate kinase; struc 91.4 0.077 2.6E-06 52.6 2.4 25 209-233 23-47 (218)
424 1svm_A Large T antigen; AAA+ f 91.3 0.17 5.7E-06 54.5 5.2 29 205-233 165-193 (377)
425 2xb4_A Adenylate kinase; ATP-b 91.3 0.11 3.8E-06 51.7 3.5 23 211-233 2-24 (223)
426 1fx0_B ATP synthase beta chain 91.3 0.49 1.7E-05 52.0 8.7 52 209-264 165-217 (498)
427 2i3b_A HCR-ntpase, human cance 91.3 0.099 3.4E-06 50.3 3.0 24 211-234 3-26 (189)
428 3exa_A TRNA delta(2)-isopenten 91.2 0.11 3.7E-06 53.7 3.3 25 209-233 3-27 (322)
429 1yrb_A ATP(GTP)binding protein 91.1 0.17 5.8E-06 51.7 4.8 27 208-234 13-39 (262)
430 1s96_A Guanylate kinase, GMP k 91.1 0.11 3.8E-06 51.3 3.2 26 209-234 16-41 (219)
431 3foz_A TRNA delta(2)-isopenten 91.1 0.14 4.8E-06 52.8 4.0 26 208-233 9-34 (316)
432 2afh_E Nitrogenase iron protei 91.0 0.17 5.7E-06 52.7 4.7 28 209-236 2-29 (289)
433 2ck3_D ATP synthase subunit be 91.0 0.29 9.9E-06 53.5 6.6 35 209-243 153-188 (482)
434 1ls1_A Signal recognition part 90.9 0.17 5.9E-06 52.6 4.6 29 208-236 97-125 (295)
435 2ehv_A Hypothetical protein PH 90.8 0.15 5E-06 51.7 3.9 24 208-231 29-52 (251)
436 1g8f_A Sulfate adenylyltransfe 90.6 0.21 7E-06 55.9 5.1 48 188-235 374-421 (511)
437 1cr0_A DNA primase/helicase; R 90.6 0.17 5.9E-06 52.8 4.3 36 208-243 34-70 (296)
438 1sq5_A Pantothenate kinase; P- 90.5 0.16 5.4E-06 53.4 4.0 28 207-234 78-105 (308)
439 3e1s_A Exodeoxyribonuclease V, 90.5 0.6 2.1E-05 53.5 9.1 27 210-236 205-231 (574)
440 1q57_A DNA primase/helicase; d 90.5 0.69 2.4E-05 52.3 9.5 54 207-267 240-294 (503)
441 2qmh_A HPR kinase/phosphorylas 90.5 0.12 4.2E-06 49.3 2.7 25 209-233 34-58 (205)
442 3lnc_A Guanylate kinase, GMP k 90.4 0.091 3.1E-06 52.6 1.9 25 209-233 27-52 (231)
443 2z43_A DNA repair and recombin 90.3 0.2 7E-06 53.0 4.6 48 197-244 95-148 (324)
444 1nlf_A Regulatory protein REPA 90.1 0.2 6.8E-06 51.8 4.2 27 209-235 30-56 (279)
445 1ltq_A Polynucleotide kinase; 90.1 0.16 5.3E-06 53.3 3.5 23 210-232 3-25 (301)
446 1q3t_A Cytidylate kinase; nucl 90.0 0.18 6.1E-06 50.6 3.7 27 207-233 14-40 (236)
447 2p67_A LAO/AO transport system 89.9 0.34 1.2E-05 51.6 6.1 30 206-235 53-82 (341)
448 2onk_A Molybdate/tungstate ABC 89.9 0.15 5.3E-06 51.1 3.1 24 207-231 23-46 (240)
449 3b85_A Phosphate starvation-in 89.9 0.14 4.8E-06 50.1 2.7 23 210-232 23-45 (208)
450 4eaq_A DTMP kinase, thymidylat 89.9 0.2 6.7E-06 50.0 3.8 28 208-235 25-52 (229)
451 2j9r_A Thymidine kinase; TK1, 89.8 0.63 2.2E-05 45.2 7.1 112 208-330 27-140 (214)
452 3eph_A TRNA isopentenyltransfe 89.7 0.19 6.6E-06 53.9 3.8 25 210-234 3-27 (409)
453 4hlc_A DTMP kinase, thymidylat 89.7 0.27 9.2E-06 47.9 4.6 31 210-240 3-33 (205)
454 1ypw_A Transitional endoplasmi 89.7 0.16 5.5E-06 61.0 3.5 53 185-237 476-539 (806)
455 1pzn_A RAD51, DNA repair and r 89.6 0.22 7.6E-06 53.2 4.2 37 197-233 119-155 (349)
456 2pcj_A ABC transporter, lipopr 89.5 0.15 5.2E-06 50.6 2.7 23 209-231 30-52 (224)
457 2ocp_A DGK, deoxyguanosine kin 89.5 0.21 7.2E-06 50.3 3.8 26 209-234 2-27 (241)
458 2rcn_A Probable GTPase ENGC; Y 89.3 2.1 7.1E-05 45.4 11.4 22 210-231 216-237 (358)
459 3zvl_A Bifunctional polynucleo 89.3 0.16 5.3E-06 56.0 2.8 27 207-233 256-282 (416)
460 1oix_A RAS-related protein RAB 89.3 0.2 7E-06 48.2 3.4 24 209-232 29-52 (191)
461 3tif_A Uncharacterized ABC tra 89.3 0.16 5.4E-06 50.9 2.6 23 209-231 31-53 (235)
462 3fdi_A Uncharacterized protein 89.1 0.23 7.9E-06 48.3 3.6 25 210-234 7-31 (201)
463 3cr8_A Sulfate adenylyltranfer 89.1 0.31 1.1E-05 55.3 5.1 28 208-235 368-395 (552)
464 4dzz_A Plasmid partitioning pr 89.0 0.26 9E-06 48.0 4.0 34 210-243 2-36 (206)
465 3ea0_A ATPase, para family; al 88.9 0.35 1.2E-05 48.7 4.9 29 208-236 3-32 (245)
466 2zts_A Putative uncharacterize 88.7 0.24 8.3E-06 50.0 3.6 37 207-243 28-65 (251)
467 2d2e_A SUFC protein; ABC-ATPas 88.6 0.22 7.4E-06 50.4 3.1 23 210-232 30-52 (250)
468 2dyk_A GTP-binding protein; GT 88.6 0.27 9.1E-06 45.5 3.6 22 210-231 2-23 (161)
469 2qm8_A GTPase/ATPase; G protei 88.6 0.5 1.7E-05 50.2 6.0 28 207-234 53-80 (337)
470 3gfo_A Cobalt import ATP-bindi 88.6 0.19 6.3E-06 51.6 2.6 23 209-231 34-56 (275)
471 2ged_A SR-beta, signal recogni 88.6 0.4 1.4E-05 46.0 5.0 24 208-231 47-70 (193)
472 2axn_A 6-phosphofructo-2-kinas 88.5 0.28 9.5E-06 55.5 4.2 30 208-237 34-63 (520)
473 2wji_A Ferrous iron transport 88.5 0.25 8.6E-06 46.2 3.3 22 210-231 4-25 (165)
474 1b0u_A Histidine permease; ABC 88.5 0.19 6.5E-06 51.2 2.6 23 209-231 32-54 (262)
475 2zu0_C Probable ATP-dependent 88.4 0.23 7.7E-06 50.8 3.1 24 209-232 46-69 (267)
476 3kjh_A CO dehydrogenase/acetyl 88.4 0.29 9.9E-06 49.5 3.9 32 212-243 3-34 (254)
477 1ji0_A ABC transporter; ATP bi 88.4 0.2 6.8E-06 50.4 2.6 23 209-231 32-54 (240)
478 3cmu_A Protein RECA, recombina 88.4 0.38 1.3E-05 62.3 5.7 48 197-244 1414-1462(2050)
479 2f9l_A RAB11B, member RAS onco 88.3 0.23 7.8E-06 48.2 3.0 23 209-231 5-27 (199)
480 3fkq_A NTRC-like two-domain pr 88.3 0.35 1.2E-05 52.3 4.7 37 207-243 141-178 (373)
481 1sgw_A Putative ABC transporte 88.3 0.17 5.9E-06 49.7 2.0 22 210-231 36-57 (214)
482 2olj_A Amino acid ABC transpor 88.2 0.2 7E-06 50.9 2.6 23 209-231 50-72 (263)
483 4g1u_C Hemin import ATP-bindin 88.2 0.2 6.9E-06 51.1 2.6 23 209-231 37-59 (266)
484 1mv5_A LMRA, multidrug resista 88.2 0.22 7.5E-06 50.2 2.8 24 208-231 27-50 (243)
485 1g6h_A High-affinity branched- 88.1 0.21 7.1E-06 50.8 2.6 23 209-231 33-55 (257)
486 3gmt_A Adenylate kinase; ssgci 88.1 0.27 9.4E-06 48.5 3.3 24 210-233 9-32 (230)
487 2zej_A Dardarin, leucine-rich 88.0 0.2 6.8E-06 47.9 2.3 21 211-231 4-24 (184)
488 4edh_A DTMP kinase, thymidylat 88.0 0.41 1.4E-05 46.9 4.6 28 209-236 6-33 (213)
489 2pze_A Cystic fibrosis transme 88.0 0.22 7.4E-06 49.7 2.6 52 281-332 139-194 (229)
490 2ff7_A Alpha-hemolysin translo 88.0 0.22 7.4E-06 50.3 2.6 23 209-231 35-57 (247)
491 2v9p_A Replication protein E1; 88.0 0.25 8.6E-06 51.3 3.1 27 207-233 124-150 (305)
492 3vr4_D V-type sodium ATPase su 87.9 0.53 1.8E-05 51.2 5.7 26 210-235 152-177 (465)
493 3io3_A DEHA2D07832P; chaperone 87.9 0.4 1.4E-05 51.0 4.7 37 207-243 16-54 (348)
494 1vpl_A ABC transporter, ATP-bi 87.9 0.22 7.5E-06 50.5 2.6 23 209-231 41-63 (256)
495 3lda_A DNA repair protein RAD5 87.8 0.29 9.8E-06 53.1 3.6 36 196-231 165-200 (400)
496 2ce2_X GTPase HRAS; signaling 87.8 0.28 9.5E-06 45.5 3.1 21 211-231 5-25 (166)
497 2h92_A Cytidylate kinase; ross 87.7 0.25 8.4E-06 48.9 2.8 24 210-233 4-27 (219)
498 2qi9_C Vitamin B12 import ATP- 87.7 0.23 8E-06 50.1 2.6 26 210-235 27-52 (249)
499 2ghi_A Transport protein; mult 87.6 0.23 8E-06 50.5 2.6 23 209-231 46-68 (260)
500 3cmw_A Protein RECA, recombina 87.6 0.67 2.3E-05 59.2 7.1 52 193-244 715-767 (1706)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-45 Score=348.06 Aligned_cols=174 Identities=46% Similarity=0.786 Sum_probs=145.9
Q ss_pred CCCCCCcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhH
Q 002220 4 SSSSCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCL 83 (951)
Q Consensus 4 s~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~ 83 (951)
|++..++|||||||+|+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|+|+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeecCCcccccccccHHHHHHHHHHHhCCChHHHHHHHHHHHhhccCCCCccccchhHHH
Q 002220 84 DELVKILDCKNLNGQMVVPVFYQVDPSDVRKQTGCFRDAFVKHQKQFKDMPEKAQNWKAALTQASNLSGWASKEIRSEAQ 163 (951)
Q Consensus 84 ~el~~~~~~~~~~~~~~~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~~~~~~~~~~~~~ 163 (951)
+||++|++|.+.++++|+||||+|+|++||+|+|.|+++|++++++ ...+++++|++||+++|+++||++. .+|++
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~ 157 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSK 157 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHH
Confidence 9999999999888999999999999999999999999999999987 6789999999999999999999984 67999
Q ss_pred HHHHHHHHHHhhccccccC
Q 002220 164 LVDVIVKDILKKLENVTAS 182 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~ 182 (951)
+|++||++|.+++ ..++|
T Consensus 158 ~i~~Iv~~v~~~l-~~~~~ 175 (176)
T 3jrn_A 158 LVDKIANEISNKK-TIYAT 175 (176)
T ss_dssp HHHHHHHHHHTTC-C----
T ss_pred HHHHHHHHHHHHh-cCCCC
Confidence 9999999999999 54443
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.3e-44 Score=344.84 Aligned_cols=169 Identities=46% Similarity=0.821 Sum_probs=159.7
Q ss_pred CCCCcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhHHH
Q 002220 6 SSCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCLDE 85 (951)
Q Consensus 6 ~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~~e 85 (951)
.+.++|||||||+|+|++++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|+|++|++|.||++|
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc-CCCeEEEEEeecCCcccccccccHHHHHHHHHHHhCCChHHHHHHHHHHHhhccCCCCccccchhHHHH
Q 002220 86 LVKILDCKNL-NGQMVVPVFYQVDPSDVRKQTGCFRDAFVKHQKQFKDMPEKAQNWKAALTQASNLSGWASKEIRSEAQL 164 (951)
Q Consensus 86 l~~~~~~~~~-~~~~~~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~~~~~~~~~~~~~~ 164 (951)
|++|++|.+. ++++|+||||+|+|++||+|+|.|+++|+++++++ ..+++++||.||+++|+++||++.+...|+++
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~ 188 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHH
T ss_pred HHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 9999999864 67899999999999999999999999999999875 45899999999999999999999998899999
Q ss_pred HHHHHHHHHhhc
Q 002220 165 VDVIVKDILKKL 176 (951)
Q Consensus 165 i~~i~~~i~~~~ 176 (951)
|++|+.+|++++
T Consensus 189 i~~Iv~di~~kl 200 (204)
T 3ozi_A 189 ADKVSADIWSHI 200 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.7e-41 Score=391.64 Aligned_cols=298 Identities=15% Similarity=0.127 Sum_probs=236.4
Q ss_pred ccchhhHHHHHHhhccC-CCCcEEEEEEecCCChhHHHHHHHHH----HhhccccceeecccccchhcCCCChHHHHHHH
Q 002220 189 VGLNSRIQKIKSLLCIG-LPDFRTIGIWGMGGIGKTTLAGAVFK----LISREFEGKCFMPNVREESENGGGLVYLRDRV 263 (951)
Q Consensus 189 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~i 263 (951)
|||+.++++|.++|..+ ..+.++|+|+||||+||||||+++|+ +++.+|+.++|+. ++... .++...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~--~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTA--PKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCS--TTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCC--CCCHHHHHHHH
Confidence 59999999999999754 34689999999999999999999997 6889999999994 43321 13577889999
Q ss_pred HHHHhcCcc--ccCCC-CC-----hHHHHHHhcCC-cEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhc
Q 002220 264 VSEIFQEDI--KIGTP-YL-----PDYIVERLNRM-KVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDF 334 (951)
Q Consensus 264 l~~l~~~~~--~~~~~-~~-----~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~ 334 (951)
+.++..... ...+. .. ...+++.|+++ |+||||||||+..++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999876532 11111 11 37788889996 999999999998876 2221 2799999999999998877
Q ss_pred CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHH-HHhcC
Q 002220 335 GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALE-NLNRI 413 (951)
Q Consensus 335 ~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~~~~~w~~~l~-~l~~~ 413 (951)
+.. ..+|+|++|+.++|++||.+++|+... .+.+.+++++|+++|+|+|||++++|+.++.+..+ |...+. .+...
T Consensus 282 ~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~-~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQT-CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFE-KMAQLNNKLESR 358 (549)
T ss_dssp CSC-EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHH-HHHHHHHHHHHH
T ss_pred CCC-CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHH-HHHHhHHHhhcc
Confidence 521 167999999999999999999987543 46778899999999999999999999999877532 323332 23332
Q ss_pred CCcchHHHHHHhhcCCchhhHhhhh-----------heecccCCCCHHHHHHHhcCC--CC-cc-----------cchHH
Q 002220 414 SDPDIYDVLKISYNDLRPEEKSMFL-----------DIACFFAGEKKDFLTCILDDP--NF-PH-----------CGLNV 468 (951)
Q Consensus 414 ~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--~~-~~-----------~~l~~ 468 (951)
....+..++.+||+.||++.|.||+ +||+||+++.++ +.+|.++ |+ .. ..+++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 4567889999999999999999999 999999999877 6788887 65 11 24899
Q ss_pred HHhccCceee----CCeEEccHHHHHHHHHHHhhhc
Q 002220 469 LIEKSLITMS----GYDIRMHDLLQEMGREIVRQEC 500 (951)
Q Consensus 469 L~~~sLi~~~----~~~~~mH~lv~~~~~~~~~~e~ 500 (951)
|+++||++.. ..+|+|||+||++|+.++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999986 2479999999999999887765
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.6e-35 Score=377.61 Aligned_cols=305 Identities=22% Similarity=0.266 Sum_probs=236.6
Q ss_pred ccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH---hhccccceeecccccchhcCCCCh
Q 002220 180 TASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL---ISREFEGKCFMPNVREESENGGGL 256 (951)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 256 (951)
..|..+..||||++++++|.++|....+++++|+|+||||+||||||+++|++ .+.+|...+||..+.... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD--KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC--HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC--chHH
Confidence 45666788999999999999999766678899999999999999999999975 456677666444443321 1123
Q ss_pred HHHHHHHHHHHhcCccccCCCC-Ch----HHHHHHhcCC--cEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCch
Q 002220 257 VYLRDRVVSEIFQEDIKIGTPY-LP----DYIVERLNRM--KVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKR 329 (951)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~-~~----~~l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~ 329 (951)
......++..+........... .. +.++..+.++ |+||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3334556666554432222211 11 4455555555 999999999998776543 68999999999999
Q ss_pred hhhh-cCCCccceEEcCC-CChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHH
Q 002220 330 ILDD-FGVCDTDIYEVNK-LRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKAL 407 (951)
Q Consensus 330 v~~~-~~~~~~~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~~~~~w~~~l 407 (951)
++.. .+.. ..+++++ |+++||++||...++... +.+.+.+++|+++|+|+||||+++|++|+.+. ..|...+
T Consensus 269 ~~~~~~~~~--~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 269 VTDSVMGPK--HVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp TTTTCCSCB--CCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred HHHhhcCCc--eEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 9854 3333 7899996 999999999999885432 33446789999999999999999999998765 5788888
Q ss_pred HHHhcCCC-----------cchHHHHHHhhcCCchhhHhhhhheecccCCCC--HHHHHHHhcCCCC-cccchHHHHhcc
Q 002220 408 ENLNRISD-----------PDIYDVLKISYNDLRPEEKSMFLDIACFFAGEK--KDFLTCILDDPNF-PHCGLNVLIEKS 473 (951)
Q Consensus 408 ~~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~-~~~~l~~L~~~s 473 (951)
+.+..... ..+..++.+||+.||+++|.||++||+||+++. .+.++.+|..++. ....+++|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKS 422 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 88764331 348899999999999999999999999999864 5678999987766 777899999999
Q ss_pred Cceee-CC---eEEccHHHHHHHHHHHhhh
Q 002220 474 LITMS-GY---DIRMHDLLQEMGREIVRQE 499 (951)
Q Consensus 474 Li~~~-~~---~~~mH~lv~~~~~~~~~~e 499 (951)
|++.. ++ +|+||+++|++++..+.++
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99987 34 4999999999999886654
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.4e-35 Score=341.26 Aligned_cols=277 Identities=19% Similarity=0.190 Sum_probs=211.4
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHH--Hhhccccc-eeecccccchhcCCCChHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFK--LISREFEG-KCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
.+..|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+. ++|+ .++. ......+..
T Consensus 127 tk~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WV-sVs~----~~d~~~IL~ 200 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKN----CNSPETVLE 200 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEE-ECCC----SSSHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEE-EeCC----CCCHHHHHH
Confidence 344699999999999999743 3479999999999999999999997 57889998 5565 4433 334555556
Q ss_pred HHHHHHhcCccc---cCCC--------CC-hHHHHHHh---cCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeC
Q 002220 262 RVVSEIFQEDIK---IGTP--------YL-PDYIVERL---NRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTR 326 (951)
Q Consensus 262 ~il~~l~~~~~~---~~~~--------~~-~~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR 326 (951)
.++..+...... ..+. +. .+.+++.+ +++|+||||||||+.++|+.+. +||+||||||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTR 273 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECS
T ss_pred HHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEecc
Confidence 655543321110 0000 01 14455555 6799999999999988888752 7999999999
Q ss_pred CchhhhhcCCCccceEEcC------CCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCC--
Q 002220 327 DKRILDDFGVCDTDIYEVN------KLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRK-- 398 (951)
Q Consensus 327 ~~~v~~~~~~~~~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~-- 398 (951)
++.++..+... ..|+++ +|+.+||++||+++. +.. .. ++..++ |+|+||||+++|+.|+.+
T Consensus 274 d~~Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--PQ---DLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--TT---THHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCC--eEEEecCccccCCcCHHHHHHHHHHHc-CCC--HH---HHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 99988644322 356666 999999999999984 322 11 233333 999999999999999876
Q ss_pred CHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhh-HhhhhheecccCCCCH--HHHHHHhcCCCC--cccchHHHHhcc
Q 002220 399 SKSDWEKALENLNRISDPDIYDVLKISYNDLRPEE-KSMFLDIACFFAGEKK--DFLTCILDDPNF--PHCGLNVLIEKS 473 (951)
Q Consensus 399 ~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~l~~~~~~~~~--~~~~l~~L~~~s 473 (951)
+.++|... ....+..++++||+.||+++ |+||++||+||+++.+ +.+..+|.+++. +...++.|+++|
T Consensus 343 s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRS 415 (1221)
T 1vt4_I 343 TWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415 (1221)
T ss_dssp SHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSS
T ss_pred CHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhC
Confidence 67888753 35679999999999999999 9999999999998754 568899998864 667799999999
Q ss_pred Cceee--CCeEEccHHHHHHH
Q 002220 474 LITMS--GYDIRMHDLLQEMG 492 (951)
Q Consensus 474 Li~~~--~~~~~mH~lv~~~~ 492 (951)
|++.. .++|+|||++++++
T Consensus 416 LLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 416 LVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSBCSSSSEEBCCCHHHHHH
T ss_pred CEEEeCCCCEEEehHHHHHHh
Confidence 99986 46899999998854
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-34 Score=341.59 Aligned_cols=348 Identities=16% Similarity=0.189 Sum_probs=243.4
Q ss_pred CCCCCCCCcc-ccccceecccCCccccc------------------cccccc--cccccceeccCCCCCCCcCCC-CCCC
Q 002220 596 YPLKTLPLDF-DLENLIALHLPYSEVEQ------------------IWKGQK--EAFKLKFIDLHDSHNLTSIPE-PLEA 653 (951)
Q Consensus 596 ~~l~~lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~~-~~~l 653 (951)
|.++.+|..+ .+++|++|+|++|.++. +|..+. ++++|++|++++|.+...+|. +.++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3444466555 67778888888888777 777777 788888888888877777764 4477
Q ss_pred CCCcEEecCCCC-CCC-ccCcccccC------CcccEEeccCCCCCcccCC--CC-CCCCCceeeCcCCCCCCCCCcc--
Q 002220 654 PNLERINLCNCT-NLS-YIPLYVQNF------HNLGSLSLKGCKSLRCFPR--NI-HFRSPIEIDCAWCVNLTEFPQI-- 720 (951)
Q Consensus 654 ~~L~~L~L~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~~l~~l~~--~~-~l~~L~~L~l~~~~~l~~l~~~-- 720 (951)
++|++|++++|. ... .+|..++.+ ++|++|++++|. +..+|. .+ .+++|+.|++++|.....+|..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 888888888876 433 577766665 788888888754 447776 44 6778888888776544356621
Q ss_pred ccceeeccccCCCCCccCcccccCCC-CcEEecccccccccccccccCCC--CCCEEeccCCCCCCccchhcc-------
Q 002220 721 SGKVVKLRLWYTPIEEVPSSIECLTN-LETLDLRLCERLKRVSTSICKLK--SLGSLLLAFCSNLEGFPEILE------- 790 (951)
Q Consensus 721 ~~~L~~L~l~~~~l~~lp~~l~~l~~-L~~L~Ls~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~------- 790 (951)
..+|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|......|..+.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 23677778888888888877888887 888888887765 6676666544 788888888877776676666
Q ss_pred cCCCCcEEEcccCCCcccCcc-ccCCCCCcEEeeccCCCCccCCcccCC---cCCCCCCCCEEeccCCCCCCcCccCC--
Q 002220 791 KMELLETLDLERTGVKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPT---RISKLSSLERLQLSGCEIKEIPEDID-- 864 (951)
Q Consensus 791 ~l~~L~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~~l~~L~~L~L~~~~l~~l~~~l~-- 864 (951)
.+++|+.|++++|.++.+|.. +..+++|+.|++++|............ .+.++++|+.|+|++|.++.+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 667788888888888877765 345788888888887776422111000 01223378888888888887777776
Q ss_pred CCCCCCEEEccCCCCcccchhhcCCCCCCEEeeC------CCCCCCcCCCc---cccccEeeeccCcccccCCC-cCcch
Q 002220 865 CLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLL------DCNMLQSIPEL---PRGLLRLNAQNCRRLRSLPE-LPSCL 934 (951)
Q Consensus 865 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~------~~~~l~~lp~~---~~~L~~L~i~~C~~L~~lp~-~~~~L 934 (951)
.+++|+.|+|++|+++.+|..+..+++|+.|+|+ +|+..+.+|.. .++|+.|++++|.- ..+|. +.++|
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L 589 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNI 589 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTC
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcC
Confidence 7788888888888887777777788888888884 34455566642 36778888877664 66766 55678
Q ss_pred hhhhcccccccc
Q 002220 935 EDQDFRNMHLWT 946 (951)
Q Consensus 935 ~~l~~~~~~~~~ 946 (951)
+.|++++|++.+
T Consensus 590 ~~L~Ls~N~l~~ 601 (636)
T 4eco_A 590 SVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCTTCE
T ss_pred CEEECcCCCCcc
Confidence 888888876543
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.2e-34 Score=345.81 Aligned_cols=398 Identities=22% Similarity=0.237 Sum_probs=308.6
Q ss_pred cccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCC-CCCCcc-c-cccc
Q 002220 534 LNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLK-TLPLDF-D-LENL 610 (951)
Q Consensus 534 l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~-~lp~~~-~-l~~L 610 (951)
++++++......+..|.++++|++|++++|.+.+. .+. . ..++|++|++++|.+. .+|..+ . +++|
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------~~~--~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP--------IPP--L-PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES--------CCC--C-CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc--------cCc--c-ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 34444444444556666777777777766653211 111 1 2347888888888777 677665 3 4788
Q ss_pred eecccCCcccc-ccccccccccccceeccCCCCCCCcCCC--CCCCCCCcEEecCCCCCCCccCcccccCC-cccEEecc
Q 002220 611 IALHLPYSEVE-QIWKGQKEAFKLKFIDLHDSHNLTSIPE--PLEAPNLERINLCNCTNLSYIPLYVQNFH-NLGSLSLK 686 (951)
Q Consensus 611 ~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~ 686 (951)
++|+|++|.+. .+|..+..+++|++|++++|.+...+|. +..+++|++|++++|.....+|..+..++ +|++|+++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 88888888887 5667788888888888888877666663 56788888888888877667888887777 88888888
Q ss_pred CCCCCcccCCCC-C--CCCCceeeCcCCCCCCCCCccc---cceeeccccCCCCC-ccCcccccCCCCcEEecccccccc
Q 002220 687 GCKSLRCFPRNI-H--FRSPIEIDCAWCVNLTEFPQIS---GKVVKLRLWYTPIE-EVPSSIECLTNLETLDLRLCERLK 759 (951)
Q Consensus 687 ~~~~l~~l~~~~-~--l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~ 759 (951)
+|.....+|..+ . +++|++|++++|.....+|..+ .+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 876655666555 2 6789999998887655666544 47889999999987 678889999999999999999988
Q ss_pred cccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCc-ccCccccCCCCCcEEeeccCCCCccCCcccCC
Q 002220 760 RVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVK-ELPPSFENLQGLRQLSLIGCSELKCSGWVLPT 838 (951)
Q Consensus 760 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 838 (951)
.+|..+..+++|++|++++|.....+|..++.+++|+.|++++|.+. .+|.+++.+++|+.|++++|.... .+|.
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~ 532 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG----NIPA 532 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE----ECCG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC----cCCH
Confidence 99999999999999999999988888999999999999999999998 778899999999999999998876 4788
Q ss_pred cCCCCCCCCEEeccCCCCC-CcCcc-------------------------------------------------------
Q 002220 839 RISKLSSLERLQLSGCEIK-EIPED------------------------------------------------------- 862 (951)
Q Consensus 839 ~~~~l~~L~~L~L~~~~l~-~l~~~------------------------------------------------------- 862 (951)
.+..+++|+.|++++|++. .+|..
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 8999999999999999776 34432
Q ss_pred ---------------CCCCCCCCEEEccCCCCc-ccchhhcCCCCCCEEeeCCCCCCCcCCCc---cccccEeeeccCcc
Q 002220 863 ---------------IDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDCNMLQSIPEL---PRGLLRLNAQNCRR 923 (951)
Q Consensus 863 ---------------l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~i~~C~~ 923 (951)
+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|...+.+|.. .++|+.|++++|.-
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 334577889999999888 78888899999999999998888888853 37788888888776
Q ss_pred cccCCCcC---cchhhhhcccccccc
Q 002220 924 LRSLPELP---SCLEDQDFRNMHLWT 946 (951)
Q Consensus 924 L~~lp~~~---~~L~~l~~~~~~~~~ 946 (951)
-..+|... ++|+.|++++|++.+
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCcCChHHhCCCCCCEEECcCCcccc
Confidence 65666632 358888888887643
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-33 Score=342.74 Aligned_cols=400 Identities=19% Similarity=0.177 Sum_probs=288.0
Q ss_pred ccccCcccceeechh--hhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC-----cc
Q 002220 533 FLNLSQIGDIHLNSR--AFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL-----DF 605 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~--~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~-----~~ 605 (951)
.++++.+......+. .|.++++|++|++++|.+.+ ..+..+..-.++|++|++++|.+...+. ..
T Consensus 104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--------PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--------CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--------cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 456666554443444 78888888888888875421 1122221223578888888888875543 22
Q ss_pred ccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEec
Q 002220 606 DLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSL 685 (951)
Q Consensus 606 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 685 (951)
.+++|++|++++|.+..... +..+++|++|++++|.+...+|.+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 67788888888888875433 37788899999999988887888778899999999998877788888889999999999
Q ss_pred cCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccc----cceeeccccCCCCC-ccCcccccCCCCcEEeccccccccc
Q 002220 686 KGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQIS----GKVVKLRLWYTPIE-EVPSSIECLTNLETLDLRLCERLKR 760 (951)
Q Consensus 686 ~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~----~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~~ 760 (951)
++|.....+|.. .+++|++|++++|.....+|..+ .+|+.|++++|.+. .+|..++.+++|++|++++|.+.+.
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 887655555554 77888888888776544555432 56777888877776 5667777777777777777777666
Q ss_pred cccc-ccCCCCCCEEeccCCCCCCccchhccc---------------------------CCCCcEEEcccCCCc-ccCcc
Q 002220 761 VSTS-ICKLKSLGSLLLAFCSNLEGFPEILEK---------------------------MELLETLDLERTGVK-ELPPS 811 (951)
Q Consensus 761 ~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~---------------------------l~~L~~L~l~~n~i~-~l~~~ 811 (951)
+|.. +.++++|++|++++|.....+|..+.. +++|++|++++|.++ .+|..
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence 6654 677777777777777654445544444 445555555555555 45666
Q ss_pred ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC-CcCccCCCCCCCCEEEccCCCCc-ccchhhcCC
Q 002220 812 FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQL 889 (951)
Q Consensus 812 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l 889 (951)
+..+++|+.|++++|.... ..|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp GGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HhcCCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 7777778888887776654 36777788888888888888887 47777888888888888888887 677788888
Q ss_pred CCCCEEeeCCCCCCCcCCCc---cccccEeeeccCcccccCCCc---Ccchhhhhcccccccc
Q 002220 890 SRLRQLNLLDCNMLQSIPEL---PRGLLRLNAQNCRRLRSLPEL---PSCLEDQDFRNMHLWT 946 (951)
Q Consensus 890 ~~L~~L~L~~~~~l~~lp~~---~~~L~~L~i~~C~~L~~lp~~---~~~L~~l~~~~~~~~~ 946 (951)
++|+.|+|++|+....+|.. .++|+.|++++|.-...+|.. .++|+.|++++|++.+
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 88888888888877777753 377888888888766566652 2458888888887653
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-32 Score=327.41 Aligned_cols=401 Identities=19% Similarity=0.162 Sum_probs=283.2
Q ss_pred eccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC-cc-cccc
Q 002220 532 IFLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL-DF-DLEN 609 (951)
Q Consensus 532 i~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~ 609 (951)
..++++++....+.+..|.++++|++|++++|.+.+ ..+..+..+ .+|++|++++|.+..+++ .+ .+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--------IHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--------ECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccce--------eChhhccCc-cccCeeeCCCCcccccChhhhccccc
Confidence 356778888888889999999999999999987532 223334444 489999999999987744 44 7999
Q ss_pred ceecccCCcccccc-ccccccccccceeccCCCCCCC-cCCCCCCCCCCcEEecCCCCCCCccCcccccCCccc--EEec
Q 002220 610 LIALHLPYSEVEQI-WKGQKEAFKLKFIDLHDSHNLT-SIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLG--SLSL 685 (951)
Q Consensus 610 L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~--~L~L 685 (951)
|++|++++|.++.+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......|..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999999999988 5678999999999999998766 447777899999999999877666677888999998 8899
Q ss_pred cCCCCCcccCCCCCCCCCceeeCcCCC---------------------------------------------------CC
Q 002220 686 KGCKSLRCFPRNIHFRSPIEIDCAWCV---------------------------------------------------NL 714 (951)
Q Consensus 686 ~~~~~l~~l~~~~~l~~L~~L~l~~~~---------------------------------------------------~l 714 (951)
++|......|..+...+|+.|++++|. .+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 987654444444444444444444332 12
Q ss_pred CCCCc----cccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc-hhc
Q 002220 715 TEFPQ----ISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP-EIL 789 (951)
Q Consensus 715 ~~l~~----~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l 789 (951)
..++. ...+|+.|++++|.+..+|..+..+++|++|++++|.+....|..+.++++|++|++++|.....++ ..+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 22222 2346778888888888888888888888888888887777767777788888888888877654444 347
Q ss_pred ccCCCCcEEEcccCCCccc---CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-C-ccCC
Q 002220 790 EKMELLETLDLERTGVKEL---PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-P-EDID 864 (951)
Q Consensus 790 ~~l~~L~~L~l~~n~i~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~-~~l~ 864 (951)
+.+++|++|++++|.+..+ +..+..+++|+.|++++|.... ..|..+..+++|+.|++++|.+... + ..+.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS----LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE----ECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc----CCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 7778888888888877755 4567777888888887777655 2455666777777777777776643 2 3366
Q ss_pred CCCCCCEEEccCCCCccc-chhhcCCCCCCEEeeCCCCCCCc-CC-----CccccccEeeeccCcccccCCCc---Ccch
Q 002220 865 CLSSLEVLDLSGSKIEIL-PTSIGQLSRLRQLNLLDCNMLQS-IP-----ELPRGLLRLNAQNCRRLRSLPEL---PSCL 934 (951)
Q Consensus 865 ~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~~~~l~~-lp-----~~~~~L~~L~i~~C~~L~~lp~~---~~~L 934 (951)
.+++|++|++++|.++.. |..+..+++|+.|+|++|+.... +| ...++|+.|++++|.--...|.. .++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 677777777777777644 35566777777777777655431 11 12366777777766432222221 1346
Q ss_pred hhhhccccccc
Q 002220 935 EDQDFRNMHLW 945 (951)
Q Consensus 935 ~~l~~~~~~~~ 945 (951)
+.|++++|.+.
T Consensus 503 ~~L~Ls~N~l~ 513 (606)
T 3t6q_A 503 NHVDLSHNRLT 513 (606)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCccC
Confidence 66677666543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-32 Score=328.13 Aligned_cols=398 Identities=20% Similarity=0.177 Sum_probs=261.4
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCC-CCcc-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTL-PLDF-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L 610 (951)
.++++++....+.+..|.++++|++|++++|.+.+++ +..+.. ..+|++|++++|.++.+ |..+ .+++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--------~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE--------DKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--------TTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC--------HHHhhc-hhhcCEeECCCCcccccChhhcCCcccC
Confidence 4566777777788888899999999999888653221 222333 34788888888888887 4444 78888
Q ss_pred eecccCCccccccc-cccccccccceeccCCCCCCC-cCCC-CCCCCCCcEEecCCCCCCCccCcccccCCccc----EE
Q 002220 611 IALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLT-SIPE-PLEAPNLERINLCNCTNLSYIPLYVQNFHNLG----SL 683 (951)
Q Consensus 611 ~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~-~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~----~L 683 (951)
++|++++|.+..++ ..+..+++|++|++++|.+.. .+|. +.++++|++|++++|......+..++.+++|+ +|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 88888888888776 558888888888888887754 4454 55788888888888765555455554444433 45
Q ss_pred eccCCCCCcccCCCC-C---------------------------------------------------------------
Q 002220 684 SLKGCKSLRCFPRNI-H--------------------------------------------------------------- 699 (951)
Q Consensus 684 ~L~~~~~l~~l~~~~-~--------------------------------------------------------------- 699 (951)
++++|. +..++... .
T Consensus 187 ~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 187 DMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp ECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eccCCC-cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 555432 22222211 2
Q ss_pred ------------------CCCCceeeCcCCCCCCCCCc--cccceeeccccCCCCCccCc--------------------
Q 002220 700 ------------------FRSPIEIDCAWCVNLTEFPQ--ISGKVVKLRLWYTPIEEVPS-------------------- 739 (951)
Q Consensus 700 ------------------l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~~~l~~lp~-------------------- 739 (951)
+++|+.|+++++. +..+|. ...+|+.|++++|.+..+|.
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC
T ss_pred eeccccccccccccccccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch
Confidence 2333333333322 122221 11245555566655555552
Q ss_pred ccccCCCCcEEeccccccccc--ccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc--cccCC
Q 002220 740 SIECLTNLETLDLRLCERLKR--VSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP--SFENL 815 (951)
Q Consensus 740 ~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~--~~~~l 815 (951)
.+..+++|+.|++++|.+... .+..+..+++|++|++++|. ...+|..+..+++|+.|++++|.+...+. .+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 122334444444444443332 24445555666666666555 23344556666666666666666665433 56667
Q ss_pred CCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC--cCccCCCCCCCCEEEccCCCCcccc-hhhcCCCCC
Q 002220 816 QGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE--IPEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRL 892 (951)
Q Consensus 816 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L 892 (951)
++|+.|++++|.... ..|..+.++++|+.|++++|.+.. +|..+..+++|++|+|++|.++.++ ..+..+++|
T Consensus 424 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 424 EKLLYLDISYTNTKI----DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCEEECcCCCCCc----cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 777777777776655 356678888889999999888885 6778888999999999999888664 678889999
Q ss_pred CEEeeCCCCCCCcCCCc---cccccEeeeccCcccccCCC----cCcchhhhhccccccccc
Q 002220 893 RQLNLLDCNMLQSIPEL---PRGLLRLNAQNCRRLRSLPE----LPSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 893 ~~L~L~~~~~l~~lp~~---~~~L~~L~i~~C~~L~~lp~----~~~~L~~l~~~~~~~~~~ 947 (951)
+.|+|++|+.....|.. .++|+.|++++|. ++.+|. +|.+|+.|++++|++.++
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999998766655542 3789999999875 777776 455699999999998774
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-33 Score=337.02 Aligned_cols=306 Identities=15% Similarity=0.125 Sum_probs=132.3
Q ss_pred cccceecccCCcccc-ccccccccccccceeccCCCC-CCC-cCC--------CCCCCCCCcEEecCCCCCCCccCc--c
Q 002220 607 LENLIALHLPYSEVE-QIWKGQKEAFKLKFIDLHDSH-NLT-SIP--------EPLEAPNLERINLCNCTNLSYIPL--Y 673 (951)
Q Consensus 607 l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~-~~~-~~~--------~~~~l~~L~~L~L~~~~~~~~~~~--~ 673 (951)
+++|++|+|++|.+. .+|..+.++++|++|+|++|. +.. .+| .+..+++|++|+|++|... .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 445555555554422 344444555555555555554 222 222 1123335555555554333 4444 4
Q ss_pred cccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccc---cc-eeeccccCCCCCccCcccccCCC--C
Q 002220 674 VQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQIS---GK-VVKLRLWYTPIEEVPSSIECLTN--L 747 (951)
Q Consensus 674 ~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~---~~-L~~L~l~~~~l~~lp~~l~~l~~--L 747 (951)
++++++|++|++++|. +..+|....+++|+.|++++|.. ..+|..+ .+ |+.|++++|.+..+|..+..++. |
T Consensus 569 l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 4555555555555433 22444222444455555544332 2333222 12 44444555544444444443322 4
Q ss_pred cEEecccccccccccc---ccc--CCCCCCEEeccCCCCCCccchh-cccCCCCcEEEcccCCCcccCccccCC------
Q 002220 748 ETLDLRLCERLKRVST---SIC--KLKSLGSLLLAFCSNLEGFPEI-LEKMELLETLDLERTGVKELPPSFENL------ 815 (951)
Q Consensus 748 ~~L~Ls~~~~~~~~~~---~~~--~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~i~~l~~~~~~l------ 815 (951)
+.|+|++|.+.+.+|. .+. .+++|+.|++++|... .+|.. +..+++|+.|++++|.+..+|..+...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 5555554444333221 111 2224445555544433 22322 224444555555555444444432211
Q ss_pred --CCCcEEeeccCCCCccCCcccCCcCC--CCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccC------CCCc-ccch
Q 002220 816 --QGLRQLSLIGCSELKCSGWVLPTRIS--KLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSG------SKIE-ILPT 884 (951)
Q Consensus 816 --~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~------n~l~-~l~~ 884 (951)
++|+.|+|++|.... +|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.+. .+|.
T Consensus 726 nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp TGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 145555555444432 333333 44455555555555444444444445555555443 2222 3444
Q ss_pred hhcCCCCCCEEeeCCCCCCCcCCC-ccccccEeeeccCc
Q 002220 885 SIGQLSRLRQLNLLDCNMLQSIPE-LPRGLLRLNAQNCR 922 (951)
Q Consensus 885 ~l~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~i~~C~ 922 (951)
.+..+++|+.|+|++|+. +.+|. ++++|+.|++++|+
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 444455555555544433 44443 33445555554444
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=330.64 Aligned_cols=296 Identities=23% Similarity=0.291 Sum_probs=222.3
Q ss_pred ccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh---hcccc-ceeecccccchhcCCCC
Q 002220 180 TASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI---SREFE-GKCFMPNVREESENGGG 255 (951)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 255 (951)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. +..|+ .++|+. +... .
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~ 191 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----D 191 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----C
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----c
Confidence 345667889999999999999997655678999999999999999999999743 77896 566654 3321 1
Q ss_pred hHHHHHHH---HHHHhcCccc-cCCCCC---h-HHHHHHhcC--CcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEe
Q 002220 256 LVYLRDRV---VSEIFQEDIK-IGTPYL---P-DYIVERLNR--MKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITT 325 (951)
Q Consensus 256 ~~~l~~~i---l~~l~~~~~~-~~~~~~---~-~~l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTt 325 (951)
...+...+ ...+...... ...... . +.+++.+.+ +++||||||||+..+++. +++|++|||||
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTs 264 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEEC
Confidence 22222222 3333321111 111111 1 455566655 789999999999776543 36799999999
Q ss_pred CCchhhhhcCCCccceEEc---CCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHH
Q 002220 326 RDKRILDDFGVCDTDIYEV---NKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSD 402 (951)
Q Consensus 326 R~~~v~~~~~~~~~~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~~~~~ 402 (951)
|++.++..++. ..+++ ++|+.+|+++||...++.. .....+.+++|+++|+|+|||++++|+.++... ..
T Consensus 265 R~~~~~~~~~~---~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~ 337 (591)
T 1z6t_A 265 RDKSVTDSVMG---PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NR 337 (591)
T ss_dssp SCGGGGTTCCS---CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TC
T ss_pred CCcHHHHhcCC---CceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hh
Confidence 99988766542 44555 5899999999999988642 222235789999999999999999999998753 36
Q ss_pred HHHHHHHHhcCC-----------CcchHHHHHHhhcCCchhhHhhhhheecccCCCC--HHHHHHHhcCCCC-cccchHH
Q 002220 403 WEKALENLNRIS-----------DPDIYDVLKISYNDLRPEEKSMFLDIACFFAGEK--KDFLTCILDDPNF-PHCGLNV 468 (951)
Q Consensus 403 w~~~l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~-~~~~l~~ 468 (951)
|...+..+.... ...+..++..||+.||++.|.||+++|+||.+.. .+.+..+|..... ....++.
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~ 417 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQE 417 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHH
Confidence 888888876432 2368899999999999999999999999998764 4568888876644 6677999
Q ss_pred HHhccCceee--C--CeEEccHHHHHHHHHH
Q 002220 469 LIEKSLITMS--G--YDIRMHDLLQEMGREI 495 (951)
Q Consensus 469 L~~~sLi~~~--~--~~~~mH~lv~~~~~~~ 495 (951)
|+++||++.. + .+|+||+++|++++..
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999999876 2 3799999999999877
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-31 Score=319.75 Aligned_cols=398 Identities=20% Similarity=0.196 Sum_probs=278.9
Q ss_pred ccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCC--CCcccccccee
Q 002220 535 NLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTL--PLDFDLENLIA 612 (951)
Q Consensus 535 ~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~l--p~~~~l~~L~~ 612 (951)
+++++....+.+..|.++++|++|++++|.+.+++ +..+ .-.++|++|++++|.+..+ |..+.+++|++
T Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~--------~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSID--------FIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--------GSCC-TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred eCCCCcccccChhhhcccccccEeeccccCcccCC--------cchh-ccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 34444444445555555555555555555443221 1112 2234788888888888876 55567888888
Q ss_pred cccCCccccccc-cccccccccc--eeccCCCCCCCcCCCCCCCC-----------------------------------
Q 002220 613 LHLPYSEVEQIW-KGQKEAFKLK--FIDLHDSHNLTSIPEPLEAP----------------------------------- 654 (951)
Q Consensus 613 L~L~~~~i~~l~-~~~~~l~~L~--~L~L~~~~~~~~~~~~~~l~----------------------------------- 654 (951)
|++++|.++.++ ..+..+++|+ .|++++|.+....|......
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcc
Confidence 888888888774 4477788888 78888887766655544433
Q ss_pred -----------------CCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCC
Q 002220 655 -----------------NLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTE 716 (951)
Q Consensus 655 -----------------~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~ 716 (951)
+|+.|++++|......+..+..+++|++|++++| .+..+|..+ .+++|++|++++|.....
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBG
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcC
Confidence 4555555555444444455778888888888885 456777665 678888888888654433
Q ss_pred CCc---cccceeeccccCCCCC-ccCcc-cccCCCCcEEecccccccccc--cccccCCCCCCEEeccCCCCCCccchhc
Q 002220 717 FPQ---ISGKVVKLRLWYTPIE-EVPSS-IECLTNLETLDLRLCERLKRV--STSICKLKSLGSLLLAFCSNLEGFPEIL 789 (951)
Q Consensus 717 l~~---~~~~L~~L~l~~~~l~-~lp~~-l~~l~~L~~L~Ls~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l 789 (951)
.|. ...+|+.|++++|.+. .+|.. +..+++|+.|++++|.+.... +..+.++++|++|++++|......|..+
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 332 3456788888888776 56543 778888888888888776655 6678888888888888887766667778
Q ss_pred ccCCCCcEEEcccCCCcccC--ccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC--c--CccC
Q 002220 790 EKMELLETLDLERTGVKELP--PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE--I--PEDI 863 (951)
Q Consensus 790 ~~l~~L~~L~l~~n~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l--~~~l 863 (951)
..+++|+.|++++|.+...+ ..+..+++|+.|++++|.... ..|..+.++++|+.|++++|.+.. + +..+
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI----SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT----TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC----cCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 88888888888888887542 347888888888888887765 356678888899999999988875 2 2457
Q ss_pred CCCCCCCEEEccCCCCccc-chhhcCCCCCCEEeeCCCCCCCcCCCcc---ccccEeeeccCcccccCCCc---Ccchhh
Q 002220 864 DCLSSLEVLDLSGSKIEIL-PTSIGQLSRLRQLNLLDCNMLQSIPELP---RGLLRLNAQNCRRLRSLPEL---PSCLED 936 (951)
Q Consensus 864 ~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~i~~C~~L~~lp~~---~~~L~~ 936 (951)
..+++|++|++++|.++.+ |..+..+++|+.|+|++|+.....|... ++| .|++++|.--...|.. .++|+.
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 7888999999999988866 4778888999999999887666555433 556 7888887533322321 245889
Q ss_pred hhccccccccc
Q 002220 937 QDFRNMHLWTD 947 (951)
Q Consensus 937 l~~~~~~~~~~ 947 (951)
|++++|++.++
T Consensus 552 L~l~~N~~~c~ 562 (606)
T 3t6q_A 552 INLRQNPLDCT 562 (606)
T ss_dssp EECTTCCEECS
T ss_pred EeCCCCCcccc
Confidence 99999988764
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.1e-31 Score=328.38 Aligned_cols=405 Identities=19% Similarity=0.182 Sum_probs=263.6
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceec-CcccccCCCcceEEEeecCCCCCC-CCcc-cccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRL-DEDLECLPEELRYLYWHEYPLKTL-PLDF-DLEN 609 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~-~~~~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~ 609 (951)
.+|++.+....+.+..|.++++|++|++++|.. ...+ +..+..+ .+|++|++++|.+..+ |..+ .+++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--------PLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--------CCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCC--------ccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcc
Confidence 456667777778888899999999999988742 1233 3334444 4899999999988876 4444 7888
Q ss_pred ceecccCCccccc-cccc--cccccccceeccCCCCCCCcCC--CCCCCCCCcEEecCCCCCCCccCcccccC--CcccE
Q 002220 610 LIALHLPYSEVEQ-IWKG--QKEAFKLKFIDLHDSHNLTSIP--EPLEAPNLERINLCNCTNLSYIPLYVQNF--HNLGS 682 (951)
Q Consensus 610 L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~ 682 (951)
|++|+|++|.+.. ++.. +.++++|++|+|++|.+....+ .+.++++|++|+|++|......+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999998875 4444 7888999999999988766544 35688899999998887766666666665 67777
Q ss_pred EeccCCCCCcccCCCC-CCC------CCceeeCcCCCCCCCCCc------------------------------------
Q 002220 683 LSLKGCKSLRCFPRNI-HFR------SPIEIDCAWCVNLTEFPQ------------------------------------ 719 (951)
Q Consensus 683 L~L~~~~~l~~l~~~~-~l~------~L~~L~l~~~~~l~~l~~------------------------------------ 719 (951)
|++++|......|..+ .+. +|+.|++++|..-...+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 7777765444444332 222 366676666521111100
Q ss_pred -----cccceeeccccCCCCCcc-CcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCC
Q 002220 720 -----ISGKVVKLRLWYTPIEEV-PSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKME 793 (951)
Q Consensus 720 -----~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 793 (951)
...+++.|++++|.+..+ |..+..+++|+.|+|++|.+....+..+.++++|++|++++|......+..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 013566677777766655 34466677777777777766666666667777777777777765555566666677
Q ss_pred CCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCc--------------ccCC--------------------
Q 002220 794 LLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGW--------------VLPT-------------------- 838 (951)
Q Consensus 794 ~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~--------------~~~~-------------------- 838 (951)
+|+.|++++|.+..++. .+..+++|+.|++++|........ .+|.
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 77777777776665543 456666666666666654432100 0000
Q ss_pred --cCCCCCCCCEEeccCCCCCCcC-------------------------------ccCCCCCCCCEEEccCCCCcccc-h
Q 002220 839 --RISKLSSLERLQLSGCEIKEIP-------------------------------EDIDCLSSLEVLDLSGSKIEILP-T 884 (951)
Q Consensus 839 --~~~~l~~L~~L~L~~~~l~~l~-------------------------------~~l~~l~~L~~L~L~~n~l~~l~-~ 884 (951)
.+.++++|+.|+|++|+++.++ ..+..+++|+.|+|++|.++.+| .
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 1224555666666666555322 22445566666677766666555 4
Q ss_pred hhcCCCCCCEEeeCCCCCCCcCCC--ccccccEeeeccCcccccCCCcCcchhhhhccccccccc
Q 002220 885 SIGQLSRLRQLNLLDCNMLQSIPE--LPRGLLRLNAQNCRRLRSLPELPSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 885 ~l~~l~~L~~L~L~~~~~l~~lp~--~~~~L~~L~i~~C~~L~~lp~~~~~L~~l~~~~~~~~~~ 947 (951)
.+..+++|+.|+|++|. ++.+|. ++++|+.|+++++.--...|...++|+.|++.+|++.|+
T Consensus 499 ~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE 562 (844)
T ss_dssp SSSSCCSCSEEEEESCC-CSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred HccchhhhheeECCCCC-CCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccc
Confidence 46788888888888874 444543 558888888888765555555555788999999988773
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=3.5e-31 Score=313.81 Aligned_cols=400 Identities=21% Similarity=0.177 Sum_probs=272.4
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 610 (951)
.++++++....+.+.+|.++++|++|++++|.+.+ ++.+.+.-..+|++|++++|.++.+|.. + .+++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---------IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE---------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCc---------cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 45777777778888899999999999999886533 2222222335899999999988887643 3 78889
Q ss_pred eecccCCcccccccc-ccccccccceeccCCCCCCC-cCCC-CCCCCCCcEEecCCCCCCCccCcccccCCcc----cEE
Q 002220 611 IALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLT-SIPE-PLEAPNLERINLCNCTNLSYIPLYVQNFHNL----GSL 683 (951)
Q Consensus 611 ~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L 683 (951)
++|++++|.++.++. .+..+++|++|++++|.+.. .+|. +.++++|++|++++|......+..++.+++| +.|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 999999998888876 58888999999999887755 3454 5578899999998887665556667777777 677
Q ss_pred eccCCCCCcccCCCCCCCCCceeeCcCCCC--------------------------------------------------
Q 002220 684 SLKGCKSLRCFPRNIHFRSPIEIDCAWCVN-------------------------------------------------- 713 (951)
Q Consensus 684 ~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~-------------------------------------------------- 713 (951)
++++|......|..+...+|+.|+++++..
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 777754333223333333444444433200
Q ss_pred -------C-CCCCc---cccceeeccccCCCCCccCcccccC--------------------CCCcEEeccccccccccc
Q 002220 714 -------L-TEFPQ---ISGKVVKLRLWYTPIEEVPSSIECL--------------------TNLETLDLRLCERLKRVS 762 (951)
Q Consensus 714 -------l-~~l~~---~~~~L~~L~l~~~~l~~lp~~l~~l--------------------~~L~~L~Ls~~~~~~~~~ 762 (951)
+ ...|. ...+|+.|++++|.+..+|..+..+ ++|+.|++++|......+
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 0 00011 1124445555555555555444444 444444444443333222
Q ss_pred ccccCCCCCCEEeccCCCCCCcc--chhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcC
Q 002220 763 TSICKLKSLGSLLLAFCSNLEGF--PEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI 840 (951)
Q Consensus 763 ~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 840 (951)
. ..+++|++|++++|...... +..+..+++|++|++++|.+..++..+..+++|+.|++++|..... ..+..+
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~ 417 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM---SEFSVF 417 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC---TTSCTT
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc---cchhhh
Confidence 2 56778888888887654332 5667788888888888888887777788888888888888876652 122457
Q ss_pred CCCCCCCEEeccCCCCCC-cCccCCCCCCCCEEEccCCCCc--ccchhhcCCCCCCEEeeCCCCCCCcCCCc---ccccc
Q 002220 841 SKLSSLERLQLSGCEIKE-IPEDIDCLSSLEVLDLSGSKIE--ILPTSIGQLSRLRQLNLLDCNMLQSIPEL---PRGLL 914 (951)
Q Consensus 841 ~~l~~L~~L~L~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~ 914 (951)
.++++|+.|++++|.+.. .|..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|+.....|.. .++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 788889999998888875 5667788888999999988876 57788888889999999888766554532 37888
Q ss_pred EeeeccCcccccCCC--c--Ccchhhhhccccccccc
Q 002220 915 RLNAQNCRRLRSLPE--L--PSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 915 ~L~i~~C~~L~~lp~--~--~~~L~~l~~~~~~~~~~ 947 (951)
.|++++|. ++.+|. + .++|+.|++++|++.++
T Consensus 498 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 498 VLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 88888874 555543 1 24588888888887664
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.3e-30 Score=311.15 Aligned_cols=378 Identities=20% Similarity=0.186 Sum_probs=267.5
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 610 (951)
.++++++....+.+.+|.++++|++|++++|.+.+++ +..+..+ .+|++|++++|.+..+|.. + .+++|
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--------p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS--------PGSFSGL-TSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC--------TTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC--------hhhcCCc-ccCCEEEccCCccccccccccCCCCCC
Confidence 4566666666777788888888888888887664431 1222222 3566666666666555522 2 55666
Q ss_pred eecccCCccccc--cccccccccccceeccCCCCCCCcCC----------------------------CCCCCCCCcEEe
Q 002220 611 IALHLPYSEVEQ--IWKGQKEAFKLKFIDLHDSHNLTSIP----------------------------EPLEAPNLERIN 660 (951)
Q Consensus 611 ~~L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~~----------------------------~~~~l~~L~~L~ 660 (951)
++|++++|.+.. +|..+.++++|++|++++|.+....+ ......+|++|+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 666666666652 45556666666666666554433222 222222455555
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 002220 661 LCNCTNL------------------------------------------------------------------------- 667 (951)
Q Consensus 661 L~~~~~~------------------------------------------------------------------------- 667 (951)
+++|...
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 5544221
Q ss_pred -------CccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCC-ccccceeeccccCCCCCcc--
Q 002220 668 -------SYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFP-QISGKVVKLRLWYTPIEEV-- 737 (951)
Q Consensus 668 -------~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~~~l~~l-- 737 (951)
..+| .+..+++|++|++++|.. ..+|.. .+++|++|++++|..+..++ ....+|+.|++++|.+..+
T Consensus 291 ~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 291 SLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp EEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred EecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc
Confidence 2222 345555666666666544 666644 67777777777765444332 1345788999999988866
Q ss_pred -CcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc-hhcccCCCCcEEEcccCCCcc-cCccccC
Q 002220 738 -PSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP-EILEKMELLETLDLERTGVKE-LPPSFEN 814 (951)
Q Consensus 738 -p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~i~~-l~~~~~~ 814 (951)
|..+..+++|+.|++++|.+.. +|..+.++++|++|++++|......+ ..+..+++|+.|++++|.+.. .|..+..
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred hhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC
Confidence 7778899999999999997554 66788999999999999998777666 678899999999999999986 5667899
Q ss_pred CCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCccc-chhhcCCCCC
Q 002220 815 LQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEIL-PTSIGQLSRL 892 (951)
Q Consensus 815 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L 892 (951)
+++|+.|++++|..... ..|..+..+++|+.|++++|.++.+ |..+..+++|++|+|++|+++.+ |..+..+++|
T Consensus 447 l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp CTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 99999999999987651 2677889999999999999999875 56788999999999999999866 6788999999
Q ss_pred CEEeeCCCCCCCcCCC----ccccccEeeeccCcccccC
Q 002220 893 RQLNLLDCNMLQSIPE----LPRGLLRLNAQNCRRLRSL 927 (951)
Q Consensus 893 ~~L~L~~~~~l~~lp~----~~~~L~~L~i~~C~~L~~l 927 (951)
+.|+|++|+ ++.+|. +|.+|+.|++.+|+-....
T Consensus 524 ~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 524 STLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 999999976 556764 3457999999987755443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.9e-30 Score=313.37 Aligned_cols=351 Identities=18% Similarity=0.181 Sum_probs=283.2
Q ss_pred ccceeechhhhccCCCccEEEEcCCCCCCCCccCcce---------ecCcccc--cCCCcceEEEeecCCC-CCCCCcc-
Q 002220 539 IGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNV---------RLDEDLE--CLPEELRYLYWHEYPL-KTLPLDF- 605 (951)
Q Consensus 539 ~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~---------~~~~~~~--~l~~~L~~L~l~~~~l-~~lp~~~- 605 (951)
+....+ +..|.++++|+.|++++|.+.+........ .+|..+. .+ .+|++|++++|.+ ..+|..+
T Consensus 435 N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHh
Confidence 444444 567999999999999999876510000000 1455543 44 4899999999985 4678665
Q ss_pred ccccceecccCCcc-ccc--ccccccccc-------ccceeccCCCCCCCcCCC---CCCCCCCcEEecCCCCCCCccCc
Q 002220 606 DLENLIALHLPYSE-VEQ--IWKGQKEAF-------KLKFIDLHDSHNLTSIPE---PLEAPNLERINLCNCTNLSYIPL 672 (951)
Q Consensus 606 ~l~~L~~L~L~~~~-i~~--l~~~~~~l~-------~L~~L~L~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~ 672 (951)
.+++|++|+|++|. ++. +|..+..+. +|++|+|++|.+. .+|. +..+++|++|+|++|... .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 79999999999998 874 888777766 9999999999887 7776 679999999999998765 888
Q ss_pred ccccCCcccEEeccCCCCCcccCCCC-CCCC-CceeeCcCCCCCCCCCcccc-----ceeeccccCCCCCccCc----cc
Q 002220 673 YVQNFHNLGSLSLKGCKSLRCFPRNI-HFRS-PIEIDCAWCVNLTEFPQISG-----KVVKLRLWYTPIEEVPS----SI 741 (951)
Q Consensus 673 ~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~-L~~L~l~~~~~l~~l~~~~~-----~L~~L~l~~~~l~~lp~----~l 741 (951)
.++.+++|+.|++++|. +..+|..+ .+++ |+.|++++|. +..+|..+. +|+.|++++|.+...++ .+
T Consensus 590 ~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 89999999999999976 44888766 7888 9999999976 557776543 39999999999975433 33
Q ss_pred c--cCCCCcEEeccccccccccccc-ccCCCCCCEEeccCCCCCCccchhccc--------CCCCcEEEcccCCCcccCc
Q 002220 742 E--CLTNLETLDLRLCERLKRVSTS-ICKLKSLGSLLLAFCSNLEGFPEILEK--------MELLETLDLERTGVKELPP 810 (951)
Q Consensus 742 ~--~l~~L~~L~Ls~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~n~i~~l~~ 810 (951)
. .+++|+.|+|++|.+. .+|.. +..+++|+.|++++|... .+|..+.. +++|+.|++++|.++.+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchH
Confidence 3 4569999999999887 55554 458999999999999765 56654333 3399999999999999999
Q ss_pred ccc--CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccC------CCCC-CcCccCCCCCCCCEEEccCCCCcc
Q 002220 811 SFE--NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSG------CEIK-EIPEDIDCLSSLEVLDLSGSKIEI 881 (951)
Q Consensus 811 ~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~------~~l~-~l~~~l~~l~~L~~L~L~~n~l~~ 881 (951)
.+. .+++|+.|+|++|.... +|..+.++++|+.|+|++ |.+. .+|..+..+++|+.|+|++|.+..
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred HhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 887 99999999999998876 677888999999999987 5555 588899999999999999999999
Q ss_pred cchhhcCCCCCCEEeeCCCCCCCc
Q 002220 882 LPTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 882 l~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
+|..+. ++|+.|+|++|+....
T Consensus 821 Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CCSCCC--SSSCEEECCSCTTCEE
T ss_pred cCHhhc--CCCCEEECCCCCCCcc
Confidence 997654 7999999999986553
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.6e-30 Score=309.68 Aligned_cols=350 Identities=19% Similarity=0.172 Sum_probs=204.9
Q ss_pred cccceeechhhhccCCCccEEEEcCCCCCCCCccCcce---------ecCcccc--cCCCcceEEEeecCCCC-CCCCcc
Q 002220 538 QIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNV---------RLDEDLE--CLPEELRYLYWHEYPLK-TLPLDF 605 (951)
Q Consensus 538 ~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~---------~~~~~~~--~l~~~L~~L~l~~~~l~-~lp~~~ 605 (951)
.+....+ +..|.++++|++|++++|.+.+........ .++..+. .+ .+|++|++++|.+. .+|..+
T Consensus 192 ~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHH
Confidence 3344444 567999999999999999876510000000 0445554 44 48999999999865 677666
Q ss_pred -ccccceecccCCcc-ccc--cccccccc------cccceeccCCCCCCCcCCC---CCCCCCCcEEecCCCCCCCccCc
Q 002220 606 -DLENLIALHLPYSE-VEQ--IWKGQKEA------FKLKFIDLHDSHNLTSIPE---PLEAPNLERINLCNCTNLSYIPL 672 (951)
Q Consensus 606 -~l~~L~~L~L~~~~-i~~--l~~~~~~l------~~L~~L~L~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~ 672 (951)
.+++|++|++++|. ++. +|..+..+ ++|++|++++|.+. .+|. +..+++|++|++++|.....+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 79999999999998 874 88888776 99999999999877 6765 6799999999999987766888
Q ss_pred ccccCCcccEEeccCCCCCcccCCCC-CCCC-CceeeCcCCCCCCCCCcccc-----ceeeccccCCCCCc-cCcccc--
Q 002220 673 YVQNFHNLGSLSLKGCKSLRCFPRNI-HFRS-PIEIDCAWCVNLTEFPQISG-----KVVKLRLWYTPIEE-VPSSIE-- 742 (951)
Q Consensus 673 ~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~-L~~L~l~~~~~l~~l~~~~~-----~L~~L~l~~~~l~~-lp~~l~-- 742 (951)
.+..+++|++|++++|. +..+|..+ .+++ |++|+++++. +..+|..+. +|+.|++++|.+.. +|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 89999999999999964 44777655 5666 6666666643 224443221 34455555554442 233333
Q ss_pred -----cCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccch-hcccC-------CCCcEEEcccCCCcccC
Q 002220 743 -----CLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPE-ILEKM-------ELLETLDLERTGVKELP 809 (951)
Q Consensus 743 -----~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l-------~~L~~L~l~~n~i~~l~ 809 (951)
.+++|+.|++++|.+....+..+..+++|++|++++|... .+|. .+... ++|+.|++++|.++.+|
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 3444555555544443221222233444555555544433 2222 11111 14455555555544444
Q ss_pred cccc--CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccC------CCCC-CcCccCCCCCCCCEEEccCCCCc
Q 002220 810 PSFE--NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSG------CEIK-EIPEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 810 ~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~------~~l~-~l~~~l~~l~~L~~L~L~~n~l~ 880 (951)
..+. .+++|+.|++++|.... +|..+..+++|+.|+|++ |.+. .+|..+..+++|++|+|++|.++
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 4443 44455555554444433 333444444555554422 2222 24444444444555555555444
Q ss_pred ccchhhcCCCCCCEEeeCCCC
Q 002220 881 ILPTSIGQLSRLRQLNLLDCN 901 (951)
Q Consensus 881 ~l~~~l~~l~~L~~L~L~~~~ 901 (951)
.+|..+. ++|+.|+|++|+
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCT
T ss_pred ccCHhHh--CcCCEEECcCCC
Confidence 4443322 445555554443
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.3e-31 Score=309.90 Aligned_cols=371 Identities=18% Similarity=0.144 Sum_probs=224.1
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 610 (951)
.++++++....+.+..|.++++|++|++++|.+.+++ +..+..+ .+|++|++++|.++.+|.. + .+++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--------~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE--------GDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEEC--------TTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccC--------hhhcccc-ccCCEEECCCCccCccCHHHhccCCCC
Confidence 4567777777788889999999999999998754322 1233333 4899999999999988865 3 78999
Q ss_pred eecccCCcccccc--ccccccccccceeccCCCCCCCcCC--CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEecc
Q 002220 611 IALHLPYSEVEQI--WKGQKEAFKLKFIDLHDSHNLTSIP--EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLK 686 (951)
Q Consensus 611 ~~L~L~~~~i~~l--~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 686 (951)
++|++++|.++.+ |..+..+++|++|++++|.....+| .+..+++|++|++++|......|..+..+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999854 5678899999999999998666665 45688999999999888777777777777666666666
Q ss_pred CCCCCcccCCCC--CCCCCceeeCcCCCCCCC------CC----------------------------------------
Q 002220 687 GCKSLRCFPRNI--HFRSPIEIDCAWCVNLTE------FP---------------------------------------- 718 (951)
Q Consensus 687 ~~~~l~~l~~~~--~l~~L~~L~l~~~~~l~~------l~---------------------------------------- 718 (951)
+|. +..+|... .+++|+.|+++++..-.. +.
T Consensus 181 ~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 543 22222211 234444444443321110 00
Q ss_pred -----------------------------------------------ccccceeeccccCCCCCccCccc-ccCCCCcEE
Q 002220 719 -----------------------------------------------QISGKVVKLRLWYTPIEEVPSSI-ECLTNLETL 750 (951)
Q Consensus 719 -----------------------------------------------~~~~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L 750 (951)
...++++.|++++|.+..+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 01123455555555555555544 345666666
Q ss_pred eccccccccccc---ccccCCCCCCEEeccCCCCCCcc--chhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeecc
Q 002220 751 DLRLCERLKRVS---TSICKLKSLGSLLLAFCSNLEGF--PEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIG 825 (951)
Q Consensus 751 ~Ls~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 825 (951)
++++|.+.+..| ..++.+++|++|++++|...... +..+..+++|++|++++|.++.+|..+..+++|+.|++++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 666665554442 22455566666666665533221 1335556666666666666666665555566666666666
Q ss_pred CCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCc
Q 002220 826 CSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
|.... +|..+ .++|+.|++++|+++.++ ..+++|++|+|++|+++.+|. ...+++|+.|+|++|+....
T Consensus 420 N~l~~-----l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 420 TGIRV-----VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp SCCSC-----CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred CCccc-----ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence 65443 22211 135666666666555543 345566666666666665553 34556666666666544333
Q ss_pred CCC---ccccccEeeeccCccc
Q 002220 906 IPE---LPRGLLRLNAQNCRRL 924 (951)
Q Consensus 906 lp~---~~~~L~~L~i~~C~~L 924 (951)
.|. -.++|+.|++.+|+-.
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBC
T ss_pred CHHHHhcCcccCEEEecCCCcc
Confidence 332 1245566666655543
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=7.8e-30 Score=308.52 Aligned_cols=332 Identities=20% Similarity=0.175 Sum_probs=223.9
Q ss_pred ceecccCCccccccc-cccccccc--cceeccCCCCCCCcCCC-CCCCCCCcEEecCCCCCCCccCcccccCCcccEEec
Q 002220 610 LIALHLPYSEVEQIW-KGQKEAFK--LKFIDLHDSHNLTSIPE-PLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSL 685 (951)
Q Consensus 610 L~~L~L~~~~i~~l~-~~~~~l~~--L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 685 (951)
|+.|++++|.+..++ ..+..+.. |+.|++++|.+....+. +..+++|++|++++|......|..+..+++|++|++
T Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 444444444444332 22444433 66666666655444443 335666666666666554444444555555555554
Q ss_pred c---------------------------------CCCCCcccCCCC-CCCCCceeeCcCCCC-CCCCCcc------ccce
Q 002220 686 K---------------------------------GCKSLRCFPRNI-HFRSPIEIDCAWCVN-LTEFPQI------SGKV 724 (951)
Q Consensus 686 ~---------------------------------~~~~l~~l~~~~-~l~~L~~L~l~~~~~-l~~l~~~------~~~L 724 (951)
+ +|......+..+ .+++|++|++++|.. +..++.. ..+|
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 4 332222112212 455555555555431 2222211 1367
Q ss_pred eeccccCCCCCcc-CcccccCCCCcEEeccccccccccc-ccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 725 VKLRLWYTPIEEV-PSSIECLTNLETLDLRLCERLKRVS-TSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 725 ~~L~l~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
+.|++++|.+..+ |..+..+++|+.|++++|.+.+.++ ..+.++++|++|++++|......+..+..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 7777888888766 4567888899999999888876655 5688889999999998887666677788888899999888
Q ss_pred CCCc---ccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc---------cCCCCCCCC
Q 002220 803 TGVK---ELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE---------DIDCLSSLE 870 (951)
Q Consensus 803 n~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~---------~l~~l~~L~ 870 (951)
|.+. .+|..+..+++|+.|++++|.... ..+..+.++++|+.|++++|.++.++. .+..+++|+
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIAN----INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCc----CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 8875 457778889999999999988776 355668888999999999998886532 267888999
Q ss_pred EEEccCCCCcccch-hhcCCCCCCEEeeCCCCCCCcCCC----ccccccEeeeccCcccccCCC-----cCcchhhhhcc
Q 002220 871 VLDLSGSKIEILPT-SIGQLSRLRQLNLLDCNMLQSIPE----LPRGLLRLNAQNCRRLRSLPE-----LPSCLEDQDFR 940 (951)
Q Consensus 871 ~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~i~~C~~L~~lp~-----~~~~L~~l~~~ 940 (951)
.|+|++|+++.+|. .+..+++|+.|+|++|. ++.+|. -.++|+.|++++| .++.++. ..++|+.++++
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECT
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEcc
Confidence 99999999998884 57889999999998864 455654 2378999999887 5666654 22568899999
Q ss_pred ccccccc
Q 002220 941 NMHLWTD 947 (951)
Q Consensus 941 ~~~~~~~ 947 (951)
+|++.|+
T Consensus 618 ~N~~~c~ 624 (680)
T 1ziw_A 618 FNPFDCT 624 (680)
T ss_dssp TCCCCBC
T ss_pred CCCcccC
Confidence 9888775
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.3e-30 Score=301.33 Aligned_cols=387 Identities=19% Similarity=0.204 Sum_probs=261.3
Q ss_pred cCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccceec
Q 002220 536 LSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENLIAL 613 (951)
Q Consensus 536 l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L 613 (951)
.+.+....++...+ ++|++|++++|.+.+++ +..+..+ ++|++|++++|.++.++.. + .+++|++|
T Consensus 12 ~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~--------~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 12 GRSRSFTSIPSGLT---AAMKSLDLSFNKITYIG--------HGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp CTTSCCSSCCSCCC---TTCCEEECCSSCCCEEC--------SSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccccccccCC---CCccEEECcCCccCccC--------hhhhhcC-CcccEEECCCCCcCccChhhccccccCCEE
Confidence 33333444554333 78999999998764321 2333344 5899999999999988743 3 88999999
Q ss_pred ccCCccccccccc-cccccccceeccCCCCCCC-cC-CCCCCCCCCcEEecCCCCCCCccC-cccccCCcccEEeccCCC
Q 002220 614 HLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLT-SI-PEPLEAPNLERINLCNCTNLSYIP-LYVQNFHNLGSLSLKGCK 689 (951)
Q Consensus 614 ~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~-~~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~ 689 (951)
+|++|.++.++.. +..+++|++|++++|.+.. .. +.+..+++|++|++++|.....+| ..+..+++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999999988876 8999999999999998764 23 456699999999999998777776 579999999999999987
Q ss_pred CCcccCCCC-CCCCCceeeCcCCCCCCCCCc----cccceeeccccCCCCCccC---cc-c-------------------
Q 002220 690 SLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQ----ISGKVVKLRLWYTPIEEVP---SS-I------------------- 741 (951)
Q Consensus 690 ~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~~~l~~lp---~~-l------------------- 741 (951)
.....|..+ .+++|++|+++++.. ..+|. ...+|+.|++++|.+..++ .. .
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 666667666 789999999988653 34443 2468889999988887642 11 1
Q ss_pred ---------ccCCCCcEEeccccccc------------------------------------------------------
Q 002220 742 ---------ECLTNLETLDLRLCERL------------------------------------------------------ 758 (951)
Q Consensus 742 ---------~~l~~L~~L~Ls~~~~~------------------------------------------------------ 758 (951)
..+++|+.|++++|...
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 11222333333322211
Q ss_pred ----ccccccc-cCCCCCCEEeccCCCCCCccch---hcccCCCCcEEEcccCCCcccC---ccccCCCCCcEEeeccCC
Q 002220 759 ----KRVSTSI-CKLKSLGSLLLAFCSNLEGFPE---ILEKMELLETLDLERTGVKELP---PSFENLQGLRQLSLIGCS 827 (951)
Q Consensus 759 ----~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~n~i~~l~---~~~~~l~~L~~L~l~~~~ 827 (951)
..+|..+ .++++|++|++++|......|. .++.+++|+.|++++|.++.++ ..+..+++|+.|++++|.
T Consensus 319 ~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred cCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 1223222 3456666666666655444322 2455666666666666666544 235566666666666665
Q ss_pred CCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 828 ELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 828 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
... +|..+..+++|+.|++++|.++.+|..+ +++|++|++++|+++.++ ..+++|+.|+|++|+ ++.+|
T Consensus 399 l~~-----lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~-l~~ip 467 (549)
T 2z81_A 399 FHP-----MPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNK-LKTLP 467 (549)
T ss_dssp CCC-----CCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSSCC
T ss_pred Ccc-----CChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCc-cCcCC
Confidence 543 4555666666666666666666655433 246666666666666554 478889999998874 45777
Q ss_pred C--ccccccEeeeccCcccccCCC--c--Ccchhhhhccccccccc
Q 002220 908 E--LPRGLLRLNAQNCRRLRSLPE--L--PSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 908 ~--~~~~L~~L~i~~C~~L~~lp~--~--~~~L~~l~~~~~~~~~~ 947 (951)
. ..++|+.|++++| .++.+|. + .++|+.|++++|++.++
T Consensus 468 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 468 DASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 5 3578999999987 4555543 1 24688999999987664
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=300.22 Aligned_cols=381 Identities=21% Similarity=0.174 Sum_probs=274.1
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC--ccccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL--DFDLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~--~~~l~~L 610 (951)
.++++++....+.+.+|.++++|++|++++|.+..+ +.....-..+|++|++++|.++.+|. ...+++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc---------CHhhhcCccccccccccccccccCCCccccccccc
Confidence 456666666777788888888888888888765332 21222223467777777777777765 2367777
Q ss_pred eecccCCccccc--cccccccccccceeccCCCCCCCcCCC-CCCCCCC----cEEecCCCCCCCc--------------
Q 002220 611 IALHLPYSEVEQ--IWKGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNL----ERINLCNCTNLSY-------------- 669 (951)
Q Consensus 611 ~~L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L----~~L~L~~~~~~~~-------------- 669 (951)
++|++++|.++. +|..+.++++|++|++++|.+....+. +..+++| ++|++++|.....
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 777777777764 566677777777777777765443322 2233333 4444444432222
Q ss_pred -------------------------------------------------------------------cCcccccCCcccE
Q 002220 670 -------------------------------------------------------------------IPLYVQNFHNLGS 682 (951)
Q Consensus 670 -------------------------------------------------------------------~~~~~~~l~~L~~ 682 (951)
.|..+..+++|++
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 2334455666777
Q ss_pred EeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCc-cccceeeccccCCCCCccCcccccCCCCcEEeccccccccc
Q 002220 683 LSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQ-ISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKR 760 (951)
Q Consensus 683 L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~ 760 (951)
|++++| .+..+|..+ .+ +|++|++++|... .+|. ...+|+.|++.+|.+...... ..+++|+.|++++|.+...
T Consensus 287 L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 287 FSLVSV-TIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp EEEESC-EECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEE
T ss_pred EEecCc-cchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcc
Confidence 777664 344555555 34 7777777766433 4443 345677777777776644433 7889999999999987655
Q ss_pred c--cccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc--cccCCCCCcEEeeccCCCCccCCccc
Q 002220 761 V--STSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP--SFENLQGLRQLSLIGCSELKCSGWVL 836 (951)
Q Consensus 761 ~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~ 836 (951)
. +..+.++++|++|++++|.... ++..+..+++|+.|++++|.+...+. .+..+++|+.|++++|.... ..
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~ 437 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----AF 437 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE----CC
T ss_pred ccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc----cc
Confidence 3 6778899999999999998554 44448999999999999999987643 68899999999999998776 36
Q ss_pred CCcCCCCCCCCEEeccCCCCC--CcCccCCCCCCCCEEEccCCCCccc-chhhcCCCCCCEEeeCCCCCCCcCCCc---c
Q 002220 837 PTRISKLSSLERLQLSGCEIK--EIPEDIDCLSSLEVLDLSGSKIEIL-PTSIGQLSRLRQLNLLDCNMLQSIPEL---P 910 (951)
Q Consensus 837 ~~~~~~l~~L~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~~~~l~~lp~~---~ 910 (951)
|..+.++++|+.|++++|.+. .+|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+.....|.. .
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 778899999999999999997 4899999999999999999999977 678999999999999998655444432 3
Q ss_pred ccccEeeeccCcccccCCCcC
Q 002220 911 RGLLRLNAQNCRRLRSLPELP 931 (951)
Q Consensus 911 ~~L~~L~i~~C~~L~~lp~~~ 931 (951)
++|+.|++.+|+--...|..+
T Consensus 518 ~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TTCCEEECCSSCBCCCTTTTH
T ss_pred cCCcEEEecCCcccCCCcchH
Confidence 789999999988666665543
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.3e-30 Score=298.95 Aligned_cols=370 Identities=20% Similarity=0.161 Sum_probs=266.4
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcccccccee
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIA 612 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 612 (951)
.++++++....+.+..|.++++|++|++++|.+.++ .+..+..+ .+|++|++++|.++.+|.. .+++|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYL--------DISVFKFN-QELEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE--------EGGGGTTC-TTCCEEECCSSCCCEEECC-CCCCCSE
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCc--------ChHHhhcc-cCCCEEecCCCceeecCcc-ccCCccE
Confidence 467777777778888999999999999999875332 23334444 4899999999999999988 8999999
Q ss_pred cccCCccccc--cccccccccccceeccCCCCCCCcCCCCCCCCCC--cEEecCCCCC--CCccCcccc-----------
Q 002220 613 LHLPYSEVEQ--IWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNL--ERINLCNCTN--LSYIPLYVQ----------- 675 (951)
Q Consensus 613 L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~~~~~~~----------- 675 (951)
|+|++|.++. +|..+..+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+.
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 9999999986 46789999999999999998654 344566777 8999888776 444444443
Q ss_pred ---------------cCCcccEEeccCCC-------CCcccCCC---------------------------CCCCCCcee
Q 002220 676 ---------------NFHNLGSLSLKGCK-------SLRCFPRN---------------------------IHFRSPIEI 706 (951)
Q Consensus 676 ---------------~l~~L~~L~L~~~~-------~l~~l~~~---------------------------~~l~~L~~L 706 (951)
.+++|+.|++++|. ....+|.. ...++|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 35666666666653 00111100 012367777
Q ss_pred eCcCCCCCCCCCcc--------ccceeeccccCCCCCccC-cccccC---CCCcEEecccccccccccccccCCCCCCEE
Q 002220 707 DCAWCVNLTEFPQI--------SGKVVKLRLWYTPIEEVP-SSIECL---TNLETLDLRLCERLKRVSTSICKLKSLGSL 774 (951)
Q Consensus 707 ~l~~~~~l~~l~~~--------~~~L~~L~l~~~~l~~lp-~~l~~l---~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 774 (951)
++++|.....+|.. ..+|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+..... ...+++|++|
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 329 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHL 329 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEE
Confidence 77766543355543 34677888888888 777 445444 678888888887544321 2577888888
Q ss_pred eccCCCCCCccchhcccCCCCcEEEcccCCCcc---cCccccCCCCCcEEeeccCCCCccCCcccCC-cCCCCCCCCEEe
Q 002220 775 LLAFCSNLEGFPEILEKMELLETLDLERTGVKE---LPPSFENLQGLRQLSLIGCSELKCSGWVLPT-RISKLSSLERLQ 850 (951)
Q Consensus 775 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~ 850 (951)
++++|......|..++.+++|++|++++|.++. +|..+..+++|++|++++|..... +|. .+..+++|+.|+
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~----l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD----EKKGDCSWTKSLLSLN 405 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC----GGGCSCCCCTTCCEEE
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc----cccchhccCccCCEEE
Confidence 888888777677788888888888888888874 345678888888888888887651 333 367778888888
Q ss_pred ccCCCCCC-cCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCCc----cccccEeeeccCccc
Q 002220 851 LSGCEIKE-IPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPEL----PRGLLRLNAQNCRRL 924 (951)
Q Consensus 851 L~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~i~~C~~L 924 (951)
+++|.++. +|..+. ++|+.|++++|+++.+|..+..+++|+.|+|++|+ ++.+|.. .++|+.|++.+|+--
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCCc
Confidence 88888864 454443 68888888888888888777788888888888864 4466642 367888888887643
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5.1e-29 Score=307.19 Aligned_cols=369 Identities=17% Similarity=0.104 Sum_probs=272.2
Q ss_pred eccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCC-CCCC-CCcc-ccc
Q 002220 532 IFLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYP-LKTL-PLDF-DLE 608 (951)
Q Consensus 532 i~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~-l~~l-p~~~-~l~ 608 (951)
...|++......++. -.++|+.|++++|.+.++ .+..+..+ .+|++|++++|. +..+ |..+ .++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i--------~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTV--------TASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEE--------CSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCcc--------ChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCC
Confidence 345555555555554 458899999999976432 22334444 589999999994 4556 4444 799
Q ss_pred cceecccCCcccccc-ccccccccccceeccCCCCCCCcCCC---CCCCCCCcEEecCCCCCCCccC-cccccCCcccEE
Q 002220 609 NLIALHLPYSEVEQI-WKGQKEAFKLKFIDLHDSHNLTSIPE---PLEAPNLERINLCNCTNLSYIP-LYVQNFHNLGSL 683 (951)
Q Consensus 609 ~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L 683 (951)
+|++|+|++|.+..+ |..+.++++|++|+|++|.+....+. +..+++|++|+|++|......+ ..++++++|++|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999999999987 67899999999999999988775553 6699999999999988766544 579999999999
Q ss_pred eccCCCCCcccCCCC-CC--CCCceeeCcCCCCCCCCCcccc---------ceeeccccCCCCC-ccCccc---------
Q 002220 684 SLKGCKSLRCFPRNI-HF--RSPIEIDCAWCVNLTEFPQISG---------KVVKLRLWYTPIE-EVPSSI--------- 741 (951)
Q Consensus 684 ~L~~~~~l~~l~~~~-~l--~~L~~L~l~~~~~l~~l~~~~~---------~L~~L~l~~~~l~-~lp~~l--------- 741 (951)
++++|......+..+ .+ ++|+.|+++++......|.... +|+.|++++|.+. .+|..+
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 999976555555554 34 8999999998865554443221 3889999998664 222211
Q ss_pred ---------------------------cc--CCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccC
Q 002220 742 ---------------------------EC--LTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKM 792 (951)
Q Consensus 742 ---------------------------~~--l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 792 (951)
.. .++|+.|++++|.+....+..+..+++|+.|++++|......+..+..+
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 11 2689999999999888888889999999999999998877778889999
Q ss_pred CCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCE
Q 002220 793 ELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEV 871 (951)
Q Consensus 793 ~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~ 871 (951)
++|++|++++|.+..+ +..+..+++|+.|++++|.... ..+..+.++++|+.|+|++|.++.++. +++|+.
T Consensus 314 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~ 385 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI----IQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPD 385 (844)
T ss_dssp SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC----CCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSE
T ss_pred CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc----cChhhhcCCCCCCEEECCCCCCCcccC----CCCcch
Confidence 9999999999999876 6688999999999999998765 345568889999999999998876543 444555
Q ss_pred EEccCCCCcccch----------------------hhcCCCCCCEEeeCCCCCCCcC----CCccccccEeeeccC
Q 002220 872 LDLSGSKIEILPT----------------------SIGQLSRLRQLNLLDCNMLQSI----PELPRGLLRLNAQNC 921 (951)
Q Consensus 872 L~L~~n~l~~l~~----------------------~l~~l~~L~~L~L~~~~~l~~l----p~~~~~L~~L~i~~C 921 (951)
|++++|+++.+|. .+..+++|+.|+|++|+..... +...++|+.|++++|
T Consensus 386 L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp EEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred hccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 5554444443331 2346677777777776543221 112355555555554
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.9e-28 Score=296.38 Aligned_cols=358 Identities=22% Similarity=0.167 Sum_probs=245.8
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 610 (951)
.++++++....+.+..|.++++|++|++++|.+.+++ +..+..+ ++|++|++++|.++.+|.. + .+++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE--------PELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC--------TTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC--------HHHHhcc-cCcCEEECCCCccCccChhhhccCCCC
Confidence 4567777777788889999999999999998764422 2223333 4899999999999999974 3 78999
Q ss_pred eecccCCccccccc-cccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecCCCCCCCccCcccc--cCCcccEEecc
Q 002220 611 IALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLCNCTNLSYIPLYVQ--NFHNLGSLSLK 686 (951)
Q Consensus 611 ~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~L~ 686 (951)
++|++++|.+..++ ..+..+++|++|++++|.+....+. +..+++|++|++++|......+..+. .+++|++|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 99999999999887 4589999999999999988776664 45899999999999876555554443 56899999999
Q ss_pred CCCCCcccCCCC-CC---------------------------CCCceeeCcCCCCCCCCCccc-----cceeeccccCCC
Q 002220 687 GCKSLRCFPRNI-HF---------------------------RSPIEIDCAWCVNLTEFPQIS-----GKVVKLRLWYTP 733 (951)
Q Consensus 687 ~~~~l~~l~~~~-~l---------------------------~~L~~L~l~~~~~l~~l~~~~-----~~L~~L~l~~~~ 733 (951)
+|......|..+ .+ ++|+.|+++++......|..+ .+|+.|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 874333333222 12 567777777765433333333 248899999999
Q ss_pred CCccC-cccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCC-----ccch----hcccCCCCcEEEcccC
Q 002220 734 IEEVP-SSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLE-----GFPE----ILEKMELLETLDLERT 803 (951)
Q Consensus 734 l~~lp-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L~l~~n 803 (951)
+..++ ..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.... .+|. .++.+++|++|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 88765 568889999999999998887777778888888888887664321 2232 5667778888888887
Q ss_pred CCcccCc-cccCCCCCcEEeeccCCCCc--c----------------------CCcccCCcCCCCCCCCEEeccCCCCCC
Q 002220 804 GVKELPP-SFENLQGLRQLSLIGCSELK--C----------------------SGWVLPTRISKLSSLERLQLSGCEIKE 858 (951)
Q Consensus 804 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~--~----------------------~~~~~~~~~~~l~~L~~L~L~~~~l~~ 858 (951)
.+..++. .+..+++|++|++++|.... . .....|..+..+++|+.|++++|.+..
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 7776543 46677777777776654210 0 001234556667777777777777653
Q ss_pred -cC-ccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCC
Q 002220 859 -IP-EDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLD 899 (951)
Q Consensus 859 -l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~ 899 (951)
+| ..+..+++|++|++++|++..++ ..+..+++|+.|++++
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 33 44556666666666666554332 2333344444444443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.6e-28 Score=282.24 Aligned_cols=341 Identities=18% Similarity=0.198 Sum_probs=282.5
Q ss_pred ccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCcccccccccccc
Q 002220 550 ANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKE 629 (951)
Q Consensus 550 ~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~ 629 (951)
..+++++.|++.++.+..++ ++.. .++|++|++++|.++.+|....+++|++|++++|.+..++. +..
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~----------~~~~-l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID----------GVEY-LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LAN 110 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT----------TGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred hHhccccEEecCCCCCccCc----------chhh-hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcC
Confidence 35678999999987654332 2333 35899999999999999886689999999999999999887 999
Q ss_pred ccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCc
Q 002220 630 AFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCA 709 (951)
Q Consensus 630 l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~ 709 (951)
+++|++|++++|.+.. ++.+..+++|++|++++|... .++ .+..+++|++|++++ .+..++....+++|+.|+++
T Consensus 111 l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp CTTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCC-ChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECc
Confidence 9999999999997654 455789999999999998643 444 488999999999974 34455555589999999999
Q ss_pred CCCCCCCCCc--cccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccch
Q 002220 710 WCVNLTEFPQ--ISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPE 787 (951)
Q Consensus 710 ~~~~l~~l~~--~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 787 (951)
+|. +..++. ...+|+.|++++|.+..++. ++.+++|+.|++++|.+... ..+..+++|++|++++|......+
T Consensus 186 ~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 186 SNK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp SSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 976 444443 34589999999999998876 88899999999999976653 358899999999999998655443
Q ss_pred hcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCC
Q 002220 788 ILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLS 867 (951)
Q Consensus 788 ~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~ 867 (951)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.... .+. +..+++|+.|++++|.+..++. +..++
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-----~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 331 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-----ISP-ISNLKNLTYLTLYFNNISDISP-VSSLT 331 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-----CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCT
T ss_pred -hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-----chh-hcCCCCCCEEECcCCcCCCchh-hccCc
Confidence 8899999999999999998876 8899999999999998776 333 7889999999999999998765 77899
Q ss_pred CCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCC-CccccccEeeeccCc
Q 002220 868 SLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIP-ELPRGLLRLNAQNCR 922 (951)
Q Consensus 868 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L~~L~i~~C~ 922 (951)
+|+.|++++|.++.++ .+..+++|+.|++++|+.....| .-.++|+.|++.+|+
T Consensus 332 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred cCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 9999999999999885 78999999999999987665555 123789999999976
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.2e-28 Score=278.09 Aligned_cols=339 Identities=21% Similarity=0.203 Sum_probs=238.7
Q ss_pred ccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCccccccccccccccccc
Q 002220 555 LRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKLK 634 (951)
Q Consensus 555 Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 634 (951)
++.|++++|.+.++|. ++++|+.|++++|.++.+|.. +.+|++|++++|.++.++... ++|+
T Consensus 73 l~~L~l~~~~l~~lp~-------------~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~---~~L~ 134 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE-------------LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP---PLLE 134 (454)
T ss_dssp CSEEECTTSCCSCCCS-------------CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC---TTCC
T ss_pred CCEEEecCCccccCCC-------------CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC---CCCC
Confidence 4777777776544332 356899999999999998864 488999999999998876432 6899
Q ss_pred eeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCC
Q 002220 635 FIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNL 714 (951)
Q Consensus 635 ~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l 714 (951)
+|++++|.+.. +|.+..+++|++|++++|.. ..+|..+ .+|++|++++| .+..+|....+++|+.|++++|. +
T Consensus 135 ~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l-~~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l 207 (454)
T 1jl5_A 135 YLGVSNNQLEK-LPELQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-L 207 (454)
T ss_dssp EEECCSSCCSS-CCCCTTCTTCCEEECCSSCC-SCCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-C
T ss_pred EEECcCCCCCC-CcccCCCCCCCEEECCCCcC-cccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-C
Confidence 99999997665 77788999999999999764 4466543 58999999996 56668865589999999999864 5
Q ss_pred CCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCC
Q 002220 715 TEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMEL 794 (951)
Q Consensus 715 ~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 794 (951)
..+|....+|+.|++++|.+..+|. ++.+++|+.|++++|.+.. +|. .+++|++|++++|... .+|.. +++
T Consensus 208 ~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~-~l~~~---~~~ 278 (454)
T 1jl5_A 208 KKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT-DLPEL---PQS 278 (454)
T ss_dssp SSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS-CCCCC---CTT
T ss_pred CcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc-ccCcc---cCc
Confidence 6678777899999999999999985 8899999999999987654 443 2478999999999754 35543 478
Q ss_pred CcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEc
Q 002220 795 LETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDL 874 (951)
Q Consensus 795 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L 874 (951)
|+.|++++|.++.+|.. .++|+.|++++|..... +. ..++|+.|++++|.++.+|.. +++|++|++
T Consensus 279 L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i-----~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSL-----CD---LPPSLEELNVSNNKLIELPAL---PPRLERLIA 344 (454)
T ss_dssp CCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEE-----CC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred CCEEECcCCccCcccCc---CCcCCEEECcCCcCCcc-----cC---CcCcCCEEECCCCcccccccc---CCcCCEEEC
Confidence 99999999999877642 36899999999887652 21 124899999999999988765 588999999
Q ss_pred cCCCCcccchhhcCCCCCCEEeeCCCCCCC--cCCC----------------ccccccEeeeccCcccccCCCcCcchhh
Q 002220 875 SGSKIEILPTSIGQLSRLRQLNLLDCNMLQ--SIPE----------------LPRGLLRLNAQNCRRLRSLPELPSCLED 936 (951)
Q Consensus 875 ~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~--~lp~----------------~~~~L~~L~i~~C~~L~~lp~~~~~L~~ 936 (951)
++|.++.+|. .+++|+.|++++|+... .+|. .+++|+.|++++++ ++.+|.+|++++.
T Consensus 345 ~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 345 SFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVED 420 (454)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred CCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhh
Confidence 9999999886 57899999999876554 3332 12567777777744 5556777777888
Q ss_pred hhccccccc
Q 002220 937 QDFRNMHLW 945 (951)
Q Consensus 937 l~~~~~~~~ 945 (951)
|++.++.+.
T Consensus 421 L~~~~~~~~ 429 (454)
T 1jl5_A 421 LRMNSERVV 429 (454)
T ss_dssp ---------
T ss_pred eeCcCcccC
Confidence 877776543
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.4e-29 Score=295.16 Aligned_cols=369 Identities=18% Similarity=0.126 Sum_probs=208.8
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcccccccee
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIA 612 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 612 (951)
.++++++....+.+..|.++++|++|++++|.+.++ .+..+..+ .+|++|++++|.++.+|.. .+++|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 125 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL--------DFHVFLFN-QDLEYLDVSHNRLQNISCC-PMASLRH 125 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE--------CTTTTTTC-TTCCEEECTTSCCCEECSC-CCTTCSE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcC--------CHHHhCCC-CCCCEEECCCCcCCccCcc-ccccCCE
Confidence 456677777777888888999999999988865332 12223333 4789999999998888877 8888999
Q ss_pred cccCCccccccc--cccccccccceeccCCCCCCCcCCCCCCCCCC--cEEecCCCCC--CCccCccccc----------
Q 002220 613 LHLPYSEVEQIW--KGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNL--ERINLCNCTN--LSYIPLYVQN---------- 676 (951)
Q Consensus 613 L~L~~~~i~~l~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~~~~~~~~---------- 676 (951)
|++++|.++.++ ..+.++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999888765 578888899999998887644 234455555 8888888766 4444444433
Q ss_pred ----------------CCcccEEeccCCCC----Cc----------------------------ccCCCCCCCCCceeeC
Q 002220 677 ----------------FHNLGSLSLKGCKS----LR----------------------------CFPRNIHFRSPIEIDC 708 (951)
Q Consensus 677 ----------------l~~L~~L~L~~~~~----l~----------------------------~l~~~~~l~~L~~L~l 708 (951)
+++|+.|++++|.. +. .++......+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 44556666655420 00 0000011224555555
Q ss_pred cCCCCCCCCCccc-----cceeecc---ccCCCCCccCc-ccc---cCCCCcEEecccccccccccccccCCCCCCEEec
Q 002220 709 AWCVNLTEFPQIS-----GKVVKLR---LWYTPIEEVPS-SIE---CLTNLETLDLRLCERLKRVSTSICKLKSLGSLLL 776 (951)
Q Consensus 709 ~~~~~l~~l~~~~-----~~L~~L~---l~~~~l~~lp~-~l~---~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l 776 (951)
++|.....+|... .+++.|. +..+.+ .+|. .+. ...+|+.|++++|.+..... ...+++|++|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEEC
Confidence 5543332333322 2222222 122222 2221 111 11345555555554322110 145566666666
Q ss_pred cCCCCCCccchhcccCCCCcEEEcccCCCcccC---ccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccC
Q 002220 777 AFCSNLEGFPEILEKMELLETLDLERTGVKELP---PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSG 853 (951)
Q Consensus 777 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 853 (951)
++|......|..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|..... ..+..+..+++|+.|++++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH---AYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC---CSSCCCCCCTTCCEEECCS
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc---cChhhhcCcccCCEEECCC
Confidence 666655555555666666666666666666443 3455666666666666655441 0112355556666666666
Q ss_pred CCCCC-cCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCCc----cccccEeeeccCc
Q 002220 854 CEIKE-IPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPEL----PRGLLRLNAQNCR 922 (951)
Q Consensus 854 ~~l~~-l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~----~~~L~~L~i~~C~ 922 (951)
|.++. .|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|+ ++.+|.. .++|+.|++.+++
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 66543 333222 45666666666666666555566666666666643 3344431 2456666666554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.4e-28 Score=282.58 Aligned_cols=341 Identities=16% Similarity=0.151 Sum_probs=174.4
Q ss_pred CCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCC-CCCC-cc-ccccceecccCCcccccc-ccccc
Q 002220 553 SNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLK-TLPL-DF-DLENLIALHLPYSEVEQI-WKGQK 628 (951)
Q Consensus 553 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~-~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~ 628 (951)
++|++|++++|.+.++ .+..+..+ .+|++|++++|.+. .++. .+ .+++|++|+|++|.+..+ |..+.
T Consensus 30 ~~l~~L~Ls~n~i~~~--------~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL--------NETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEE--------CTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCCccCcC--------ChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 5566666666544221 11222222 35666666666554 3332 22 456666666666666554 44456
Q ss_pred cccccceeccCCCCCCCcCCC---CCCCCCCcEEecCCCCCCCccCcc-cccCCcccEEeccCCCCCcccCCCC---CCC
Q 002220 629 EAFKLKFIDLHDSHNLTSIPE---PLEAPNLERINLCNCTNLSYIPLY-VQNFHNLGSLSLKGCKSLRCFPRNI---HFR 701 (951)
Q Consensus 629 ~l~~L~~L~L~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~l~~~~---~l~ 701 (951)
.+++|++|++++|.+....+. +..+++|++|++++|......|.. +..+++|++|++++|......+..+ ...
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 666666666666655432221 345566666666665554444443 5566666666666654333333322 124
Q ss_pred CCceeeCcCCCCCCCCCc------------cccceeeccccCCCCCc-cCccccc---CCCCcEEeccccccccccc---
Q 002220 702 SPIEIDCAWCVNLTEFPQ------------ISGKVVKLRLWYTPIEE-VPSSIEC---LTNLETLDLRLCERLKRVS--- 762 (951)
Q Consensus 702 ~L~~L~l~~~~~l~~l~~------------~~~~L~~L~l~~~~l~~-lp~~l~~---l~~L~~L~Ls~~~~~~~~~--- 762 (951)
+|+.|+++++... .++. ...+|+.|++++|.+.. +|..+.. .++|+.|++++|.......
T Consensus 181 ~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 181 HFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred cccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 5555555554322 1111 11345555555555542 2222222 2455555555543222110
Q ss_pred -------cccc--CCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccC
Q 002220 763 -------TSIC--KLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCS 832 (951)
Q Consensus 763 -------~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~ 832 (951)
..+. ..++|++|++++|......|..++.+++|+.|++++|.+..+ |..+..+++|+.|++++|....
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 337 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-- 337 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC--
Confidence 0111 124566666666655555555566666666666666666544 3355566666666666665544
Q ss_pred CcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccch-hhcCCCCCCEEeeCCCCCCCcCC
Q 002220 833 GWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILPT-SIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 833 ~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
..|..+.++++|+.|+|++|.++.+ |..+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+.....|
T Consensus 338 --~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 --IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp --ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred --cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 2344455566666666666666553 4455556666666666666665553 34556666666666665555544
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=6.2e-28 Score=277.24 Aligned_cols=338 Identities=19% Similarity=0.241 Sum_probs=279.2
Q ss_pred cccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceec
Q 002220 534 LNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIAL 613 (951)
Q Consensus 534 l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L 613 (951)
+++.++....++ .|..+++|++|++++|.+.+++. +..+ .+|++|++++|.+..++....+++|++|
T Consensus 51 L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~----------~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L 117 (466)
T 1o6v_A 51 LQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP----------LKNL-TKLVDILMNNNQIADITPLANLTNLTGL 117 (466)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG----------GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred EecCCCCCccCc--chhhhcCCCEEECCCCccCCchh----------hhcc-ccCCEEECCCCccccChhhcCCCCCCEE
Confidence 344444444443 48899999999999987654331 2333 5899999999999999886689999999
Q ss_pred ccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcc
Q 002220 614 HLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRC 693 (951)
Q Consensus 614 ~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 693 (951)
++++|.++.++. +..+++|++|++++|.+. .++.+..+++|++|++++ . ....+ .+.++++|++|++++|. +..
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSC-CCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCc-CCC
Confidence 999999999876 899999999999999754 456778999999999974 2 33333 38899999999999965 666
Q ss_pred cCCCCCCCCCceeeCcCCCCCCCCC-ccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCC
Q 002220 694 FPRNIHFRSPIEIDCAWCVNLTEFP-QISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLG 772 (951)
Q Consensus 694 l~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~ 772 (951)
++....+++|+.|++++|......| ....+|+.|++++|.+..++ .+..+++|+.|++++|.+....+ +..+++|+
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 6665589999999999976433322 24568999999999999886 58899999999999998776554 88999999
Q ss_pred EEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEecc
Q 002220 773 SLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLS 852 (951)
Q Consensus 773 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 852 (951)
.|++++|..... +. +..+++|+.|++++|.+..++. +..+++|+.|++++|..... .| +..+++|+.|+++
T Consensus 269 ~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~----~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 269 ELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI----SP--VSSLTKLQRLFFY 339 (466)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC----GG--GGGCTTCCEEECC
T ss_pred EEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc----hh--hccCccCCEeECC
Confidence 999999986544 43 8899999999999999998765 78999999999999987762 22 6789999999999
Q ss_pred CCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCC
Q 002220 853 GCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 853 ~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~ 904 (951)
+|.++.++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|+...
T Consensus 340 ~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 99999884 68899999999999999998775 8999999999999986544
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=287.36 Aligned_cols=368 Identities=17% Similarity=0.140 Sum_probs=254.1
Q ss_pred cEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC-cc-ccccceecccCCcccccc-ccccccccc
Q 002220 556 RLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL-DF-DLENLIALHLPYSEVEQI-WKGQKEAFK 632 (951)
Q Consensus 556 r~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~ 632 (951)
++|++++|.+.++|. . ++++|+.|++++|.++.++. .+ .+++|++|+|++|.++.+ |..+..+++
T Consensus 3 ~~l~ls~n~l~~ip~---------~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK---------D---LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSSCCC---------S---CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCCCcccccc---------c---ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence 678999887755442 2 23699999999999999874 33 789999999999999988 567999999
Q ss_pred cceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCC-ccCcccccCCcccEEeccCCCCCcccCCCCCCCCC--ceeeCc
Q 002220 633 LKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLS-YIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSP--IEIDCA 709 (951)
Q Consensus 633 L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L--~~L~l~ 709 (951)
|++|++++|.+. .+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.. .. .....+++| +.|+++
T Consensus 71 L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 71 LEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK-SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp CCEEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG-GGGGGGTTSCEEEEEEE
T ss_pred CCEEecCCCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch-hhccccccceeeEEEee
Confidence 999999999876 56655 89999999999988766 4788999999999999999753 32 122256777 999998
Q ss_pred CCCC--CCCCCcc-----------------------------ccceeeccccCCC-------CCccCcccccC-------
Q 002220 710 WCVN--LTEFPQI-----------------------------SGKVVKLRLWYTP-------IEEVPSSIECL------- 744 (951)
Q Consensus 710 ~~~~--l~~l~~~-----------------------------~~~L~~L~l~~~~-------l~~lp~~l~~l------- 744 (951)
+|.. ....|.. ..+|+.|++++|. +......+..+
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 8765 2322322 2345555555543 11101112222
Q ss_pred --------------------CCCcEEecccccccccccccc-----cCCCCCCEEeccCCCCCCccc-hh----------
Q 002220 745 --------------------TNLETLDLRLCERLKRVSTSI-----CKLKSLGSLLLAFCSNLEGFP-EI---------- 788 (951)
Q Consensus 745 --------------------~~L~~L~Ls~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~---------- 788 (951)
++|++|++++|.+.+.+|..+ .++++|+.+++++|.. .+| ..
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence 356666666666655666655 5666666666555543 222 11
Q ss_pred ---------------cccCCCCcEEEcccCCCcc-cCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEecc
Q 002220 789 ---------------LEKMELLETLDLERTGVKE-LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLS 852 (951)
Q Consensus 789 ---------------l~~l~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 852 (951)
...+++|++|++++|.++. +|..+..+++|+.|++++|...... .+|..+..+++|+.|+++
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECC
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc--cchHHHhhCCCCCEEECC
Confidence 1566777777777777775 5667777777788887777766421 134556777778888888
Q ss_pred CCCCCC-cCcc-CCCCCCCCEEEccCCCCc-ccchhhcCCCCCCEEeeCCCCCCCcCCC---ccccccEeeeccCccccc
Q 002220 853 GCEIKE-IPED-IDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDCNMLQSIPE---LPRGLLRLNAQNCRRLRS 926 (951)
Q Consensus 853 ~~~l~~-l~~~-l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L~i~~C~~L~~ 926 (951)
+|.+.. +|.. +..+++|++|++++|.++ .+|..+. ++|+.|++++|. ++.+|. -.++|+.|++++| .++.
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCc
Confidence 877776 6654 566777888888887775 3443332 678888888764 446664 2377888888886 4667
Q ss_pred CCC--c--Ccchhhhhccccccccc
Q 002220 927 LPE--L--PSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 927 lp~--~--~~~L~~l~~~~~~~~~~ 947 (951)
+|. + .++|+.|++++|++.++
T Consensus 459 l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 459 VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHhccCCcccEEECcCCCCccc
Confidence 776 2 24588889999888764
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.4e-27 Score=261.67 Aligned_cols=289 Identities=19% Similarity=0.184 Sum_probs=139.2
Q ss_pred CCCCCCCCccccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccc
Q 002220 596 YPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQ 675 (951)
Q Consensus 596 ~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 675 (951)
+.+..+|....+++|++|++++|.++.++. +..+++|++|++++|.+. .++.+..+++|++|++++|... .++. +.
T Consensus 54 ~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~l~~n~i~-~~~~-~~ 129 (347)
T 4fmz_A 54 EKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNIS-DISP-LA 129 (347)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECTTSCCC-CCGG-GT
T ss_pred CccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCCEEECcCCccc-Cchh-hc
Confidence 333333333344445555555555444443 445555555555555322 2334445555555555554322 2222 44
Q ss_pred cCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccc
Q 002220 676 NFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLC 755 (951)
Q Consensus 676 ~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~ 755 (951)
.+++|++|++++|..+..++....+++|+.|++++ |.+..++. +..+++|+.|++++|
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~---------------------~~~~~~~~-~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE---------------------SKVKDVTP-IANLTDLYSLSLNYN 187 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS---------------------SCCCCCGG-GGGCTTCSEEECTTS
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecC---------------------CCcCCchh-hccCCCCCEEEccCC
Confidence 55555555555554444333322333333333333 33333332 445555555555555
Q ss_pred cccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcc
Q 002220 756 ERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWV 835 (951)
Q Consensus 756 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 835 (951)
.+....+ +..+++|+.|++++|......+ +..+++|++|++++|.++.++. +..+++|+.|++++|....
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~----- 257 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD----- 257 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-----
Confidence 4433222 4555555555555554332222 4555556666666655555544 5555566666665555443
Q ss_pred cCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCCCCCCCcCC-Cccccc
Q 002220 836 LPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLDCNMLQSIP-ELPRGL 913 (951)
Q Consensus 836 ~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~~~l~~lp-~~~~~L 913 (951)
+ ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++..+ ..+..+++|+.|++++|+.....| ...++|
T Consensus 258 ~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L 335 (347)
T 4fmz_A 258 I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM 335 (347)
T ss_dssp C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTC
T ss_pred C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcc
Confidence 1 22455556666666666555553 3455556666666666555333 445556666666666655332222 122445
Q ss_pred cEeeeccCc
Q 002220 914 LRLNAQNCR 922 (951)
Q Consensus 914 ~~L~i~~C~ 922 (951)
+.|++.+|+
T Consensus 336 ~~L~l~~N~ 344 (347)
T 4fmz_A 336 DSADFANQV 344 (347)
T ss_dssp SEESSSCC-
T ss_pred ceeehhhhc
Confidence 555555443
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.5e-27 Score=274.02 Aligned_cols=342 Identities=21% Similarity=0.195 Sum_probs=277.3
Q ss_pred CCCcceEEEeecCCCCCCC-Ccc-ccccceecccCCcccc-cc-ccccccccccceeccCCCCCCCcCCC-CCCCCCCcE
Q 002220 584 LPEELRYLYWHEYPLKTLP-LDF-DLENLIALHLPYSEVE-QI-WKGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLER 658 (951)
Q Consensus 584 l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~ 658 (951)
+|++|++|++++|.++.++ ..+ .+++|++|++++|.+. .+ +..+..+++|++|++++|.+....|. +.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 5679999999999999874 444 8999999999999986 55 45689999999999999998777664 558999999
Q ss_pred EecCCCCCCCccCcc--cccCCcccEEeccCCCCCcccCCC-C-CCCCCceeeCcCCCCCCCCCccc-----cceeeccc
Q 002220 659 INLCNCTNLSYIPLY--VQNFHNLGSLSLKGCKSLRCFPRN-I-HFRSPIEIDCAWCVNLTEFPQIS-----GKVVKLRL 729 (951)
Q Consensus 659 L~L~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~l~~l~~~-~-~l~~L~~L~l~~~~~l~~l~~~~-----~~L~~L~l 729 (951)
|++++|......+.. +..+++|++|++++|......|.. + .+++|++|+++++......+..+ .+++.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999876655544 899999999999997655554654 3 89999999999986554444433 47889999
Q ss_pred cCCCCCccCcc---------cccCCCCcEEecccccccccccccccCC---CCCCEEeccCCCCCCcc----------ch
Q 002220 730 WYTPIEEVPSS---------IECLTNLETLDLRLCERLKRVSTSICKL---KSLGSLLLAFCSNLEGF----------PE 787 (951)
Q Consensus 730 ~~~~l~~lp~~---------l~~l~~L~~L~Ls~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~----------~~ 787 (951)
++|.+..++.. +..+++|+.|++++|.+.+..|..+..+ ++|+.|++++|...... +.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 99999887643 3466899999999999888887776544 89999999988644321 11
Q ss_pred hcc--cCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccC
Q 002220 788 ILE--KMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDI 863 (951)
Q Consensus 788 ~l~--~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l 863 (951)
.+. ..++|+.|++++|.+..+ |..+..+++|+.|++++|.... ..|..+.++++|+.|+|++|.+..+ |..+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 122 236899999999999865 6678999999999999999887 3677899999999999999999986 6678
Q ss_pred CCCCCCCEEEccCCCCccc-chhhcCCCCCCEEeeCCCCCCCcCCC----ccccccEeeeccCcccccCCCc
Q 002220 864 DCLSSLEVLDLSGSKIEIL-PTSIGQLSRLRQLNLLDCNMLQSIPE----LPRGLLRLNAQNCRRLRSLPEL 930 (951)
Q Consensus 864 ~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~i~~C~~L~~lp~~ 930 (951)
..+++|++|+|++|.++.+ |..+..+++|+.|+|++|+. +.+|. -.++|+.|++++|+--...|.+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9999999999999999977 57899999999999999764 44553 2478999999998866666643
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4e-27 Score=259.86 Aligned_cols=306 Identities=17% Similarity=0.232 Sum_probs=247.3
Q ss_pred hhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCcccccccccc
Q 002220 548 AFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQ 627 (951)
Q Consensus 548 ~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~ 627 (951)
.+..+++|+.|+++++.+..++ ++.. .++|++|++++|.++.+|....+++|++|++++|.++.++ .+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~----------~~~~-~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQ----------GIEY-LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCT----------TGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cchhcccccEEEEeCCccccch----------hhhh-cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HH
Confidence 4568899999999998764332 2333 3589999999999999988668999999999999999885 58
Q ss_pred ccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceee
Q 002220 628 KEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEID 707 (951)
Q Consensus 628 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~ 707 (951)
..+++|++|++++|.+.. ++.+..+++|++|++++|.....++. +..+++|++|++++|. +..++....+++|+
T Consensus 107 ~~l~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~--- 180 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLY--- 180 (347)
T ss_dssp TTCTTCSEEECTTSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCS---
T ss_pred cCCCcCCEEECcCCcccC-chhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCC---
Confidence 999999999999997654 44577999999999999977776655 8999999999999965 44443322444444
Q ss_pred CcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccch
Q 002220 708 CAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPE 787 (951)
Q Consensus 708 l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 787 (951)
.|++++|.+..++. +..+++|+.|++++|.+....+ +..+++|++|++++|.... ++.
T Consensus 181 ------------------~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~ 238 (347)
T 4fmz_A 181 ------------------SLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP 238 (347)
T ss_dssp ------------------EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG
T ss_pred ------------------EEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc
Confidence 45555566666666 7888999999999987765544 7889999999999997554 343
Q ss_pred hcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-cCccCCCC
Q 002220 788 ILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-IPEDIDCL 866 (951)
Q Consensus 788 ~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~~~l~~l 866 (951)
+..+++|++|++++|.++.+ ..+..+++|+.|++++|.... + ..+..+++|+.|++++|.+.. .|..+..+
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred -hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 88999999999999999887 468899999999999997766 3 347888999999999999986 45667889
Q ss_pred CCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCC
Q 002220 867 SSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 867 ~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~ 902 (951)
++|++|++++|.++.++. +..+++|+.|++++|+.
T Consensus 311 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp TTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred ccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 999999999999998875 88999999999999864
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.9e-27 Score=270.38 Aligned_cols=361 Identities=19% Similarity=0.146 Sum_probs=257.6
Q ss_pred cccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCC------------CcceEEEeecCCCCCC
Q 002220 534 LNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLP------------EELRYLYWHEYPLKTL 601 (951)
Q Consensus 534 l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~------------~~L~~L~l~~~~l~~l 601 (951)
++++.+.. .--+..|.++++|++|++++|.+.+ .++..+..+. .+++.|++++|.++.+
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~--------~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWER--------NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHH--------TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccc--------cCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 33444434 3335668999999999998876431 2233333322 2469999999999999
Q ss_pred CCccccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCccc
Q 002220 602 PLDFDLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLG 681 (951)
Q Consensus 602 p~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 681 (951)
|.. +++|++|++++|.++.+|.. ..+|++|++++|.+.. ++.. .++|++|++++|... .+| .++.+++|+
T Consensus 87 p~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~-~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 87 PEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLE-KLP-ELQNSSFLK 156 (454)
T ss_dssp CSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCS-SCC-CCTTCTTCC
T ss_pred CCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCC-CCc-ccCCCCCCC
Confidence 873 58999999999999998864 4789999999997543 3332 279999999998655 477 599999999
Q ss_pred EEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCcc--ccceeeccccCCCCCccCcccccCCCCcEEecccccccc
Q 002220 682 SLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQI--SGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLK 759 (951)
Q Consensus 682 ~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~ 759 (951)
+|++++| .+..+|... .+|++|++++| .++.+|.. ..+|+.|++++|.+..+|... ++|+.|++++|.+.
T Consensus 157 ~L~l~~N-~l~~lp~~~--~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 157 IIDVDNN-SLKKLPDLP--PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE- 228 (454)
T ss_dssp EEECCSS-CCSCCCCCC--TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-
T ss_pred EEECCCC-cCcccCCCc--ccccEEECcCC-cCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-
Confidence 9999996 466677643 69999999987 45556642 357889999999999888643 58999999999766
Q ss_pred cccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCc
Q 002220 760 RVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTR 839 (951)
Q Consensus 760 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 839 (951)
.+|. +.++++|++|++++|... .+|. .+++|+.|++++|.++.+|.. +++|+.|++++|..... |.
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~l~-~l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-----~~- 294 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-----SE- 294 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-----SC-
T ss_pred cccc-cCCCCCCCEEECCCCcCC-cccc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-----cC-
Confidence 6674 889999999999998754 4554 258899999999999988764 48999999999987662 22
Q ss_pred CCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCCccccccEeeec
Q 002220 840 ISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPELPRGLLRLNAQ 919 (951)
Q Consensus 840 ~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~i~ 919 (951)
-.++|+.|++++|.+..++.. .++|++|++++|+++.+|.. +++|+.|++++|. ++.+|..+++|+.|+++
T Consensus 295 --~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-l~~lp~~l~~L~~L~L~ 365 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVE 365 (454)
T ss_dssp --CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred --cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCc-cccccchhhhccEEECC
Confidence 126899999999999886632 35899999999999998854 6899999999974 56788888999999999
Q ss_pred cCcccccCCCcC-------------------cchhhhhccccccc
Q 002220 920 NCRRLRSLPELP-------------------SCLEDQDFRNMHLW 945 (951)
Q Consensus 920 ~C~~L~~lp~~~-------------------~~L~~l~~~~~~~~ 945 (951)
+|. +..+|.+| ++|+.|++++|++.
T Consensus 366 ~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 366 YNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp SSC-CSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 875 44444333 56888888888764
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=271.98 Aligned_cols=295 Identities=20% Similarity=0.223 Sum_probs=207.7
Q ss_pred CCCcceEEEeecCCCCCCCC-cc-ccccceecccCCcccccc-ccccccccccceeccCCCCCCCcCCC-CCCCCCCcEE
Q 002220 584 LPEELRYLYWHEYPLKTLPL-DF-DLENLIALHLPYSEVEQI-WKGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERI 659 (951)
Q Consensus 584 l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L 659 (951)
+|.+++.|++++|.++.++. .+ .+++|++|+|++|.++.+ |..+.++++|++|+|++|.+....+. +.++++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 45567777777777776643 22 567777777777777766 45567777777777777765444433 3467777777
Q ss_pred ecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccC
Q 002220 660 NLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVP 738 (951)
Q Consensus 660 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp 738 (951)
+|++|......+..+..+++|++|++++|......+..+ .++ +|+.|++++|.+..+|
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN---------------------SLEQLTLEKCNLTSIP 168 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT---------------------TCCEEEEESCCCSSCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC---------------------CCCEEECCCCcCcccC
Confidence 777766655556667777777777777653222222222 333 4556666667777766
Q ss_pred c-ccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCC
Q 002220 739 S-SIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQ 816 (951)
Q Consensus 739 ~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~ 816 (951)
. .+..+++|+.|++++|.+....+..+.++++|+.|++++|.....++.......+|+.|++++|.++.+|. .+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 4 47778888888888887777666778888888888888887777777666666688888888888887774 577888
Q ss_pred CCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccch-hhcCCCCCCE
Q 002220 817 GLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILPT-SIGQLSRLRQ 894 (951)
Q Consensus 817 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~ 894 (951)
+|+.|+|++|.... ..+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.+|. .+..+++|+.
T Consensus 249 ~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 249 YLRFLNLSYNPIST----IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TCCEEECCSSCCCE----ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred ccCeeECCCCcCCc----cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 88888888887765 2455677788888888888888874 5667788888888888888887773 4577888888
Q ss_pred EeeCCCCCC
Q 002220 895 LNLLDCNML 903 (951)
Q Consensus 895 L~L~~~~~l 903 (951)
|+|++|+..
T Consensus 325 L~l~~N~l~ 333 (477)
T 2id5_A 325 LILDSNPLA 333 (477)
T ss_dssp EECCSSCEE
T ss_pred EEccCCCcc
Confidence 888887654
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.6e-26 Score=272.42 Aligned_cols=373 Identities=16% Similarity=0.123 Sum_probs=270.9
Q ss_pred cCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC-cc-ccccceecccCCcccccc-cccc
Q 002220 551 NMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL-DF-DLENLIALHLPYSEVEQI-WKGQ 627 (951)
Q Consensus 551 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~ 627 (951)
.+...++++++++.+.++|. .++++|+.|++++|.++.+|. .+ .+++|++|+|++|.++.+ |..+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~------------~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPK------------DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp ----CCEEECTTSCCCSCCT------------TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred ccCCCcEEEcCCCCCccCCC------------CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence 34455899999987655442 234789999999999999984 33 899999999999999988 4569
Q ss_pred ccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCC-ccCcccccCCcccEEeccCCCCCcccCCCCCCCCC--c
Q 002220 628 KEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLS-YIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSP--I 704 (951)
Q Consensus 628 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L--~ 704 (951)
..+++|++|++++|.+. .+|.. .+++|++|++++|.... ..|..++++++|++|++++|.. ... ....+++| +
T Consensus 97 ~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~-~~~~l~~L~L~ 172 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQL-DLLPVAHLHLS 172 (562)
T ss_dssp TTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTT-TTGGGTTSCEE
T ss_pred CCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccC-chhhhhhceee
Confidence 99999999999999865 56665 89999999999987655 3467899999999999999653 321 22245555 9
Q ss_pred eeeCcCCCC--CCCCCccc-----------------------------cceeeccccCCCCC--cc---Ccccc------
Q 002220 705 EIDCAWCVN--LTEFPQIS-----------------------------GKVVKLRLWYTPIE--EV---PSSIE------ 742 (951)
Q Consensus 705 ~L~l~~~~~--l~~l~~~~-----------------------------~~L~~L~l~~~~l~--~l---p~~l~------ 742 (951)
+|+++++.. ....|..+ .+|+.|++++|... .+ ...+.
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999988765 22222222 23445555544210 00 00001
Q ss_pred ---------------------cCCCCcEEecccccccccccccc-----cCCC--------------------------C
Q 002220 743 ---------------------CLTNLETLDLRLCERLKRVSTSI-----CKLK--------------------------S 770 (951)
Q Consensus 743 ---------------------~l~~L~~L~Ls~~~~~~~~~~~~-----~~l~--------------------------~ 770 (951)
..++|++|++++|.+.+.+|..+ .+++ +
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 12367777777776665666544 3333 3
Q ss_pred CCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc-cCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEE
Q 002220 771 LGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE-LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERL 849 (951)
Q Consensus 771 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 849 (951)
|++|++++|...... ..+.+++|++|++++|.++. +|..+..+++|+.|++++|...... ..|..+.++++|+.|
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETL 408 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEE
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEE
Confidence 555566555432211 12678999999999999996 6788999999999999999887632 145668899999999
Q ss_pred eccCCCCCC-cCcc-CCCCCCCCEEEccCCCCc-ccchhhcCCCCCCEEeeCCCCCCCcCCC---ccccccEeeeccCcc
Q 002220 850 QLSGCEIKE-IPED-IDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDCNMLQSIPE---LPRGLLRLNAQNCRR 923 (951)
Q Consensus 850 ~L~~~~l~~-l~~~-l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L~i~~C~~ 923 (951)
++++|.+.. +|.. +..+++|++|++++|.++ .+|..+. ++|+.|+|++| .++.+|. -.++|+.|++++| .
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-Q 484 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-C
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-C
Confidence 999999997 7765 688999999999999996 4443332 79999999997 5667775 2378999999986 4
Q ss_pred cccCCCc----Ccchhhhhccccccccc
Q 002220 924 LRSLPEL----PSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 924 L~~lp~~----~~~L~~l~~~~~~~~~~ 947 (951)
++.+|.. .++|+.|++++|++.++
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 7777762 24699999999998764
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=9.9e-27 Score=260.95 Aligned_cols=298 Identities=16% Similarity=0.120 Sum_probs=126.7
Q ss_pred cceEEEeecCCCCCCCCcc--ccccceecccCCcccccccc-ccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecC
Q 002220 587 ELRYLYWHEYPLKTLPLDF--DLENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLC 662 (951)
Q Consensus 587 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~ 662 (951)
+++.|++.++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|++++|.+....|. +..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 3444444444444444432 34455555555555554443 345555555555555544443333 2345555555555
Q ss_pred CCCCCCccCc-ccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcc
Q 002220 663 NCTNLSYIPL-YVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSS 740 (951)
Q Consensus 663 ~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~ 740 (951)
+|... .+|. .+..+++|++|++++|......+..+ .+++|++|++++ |.+..++
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~-- 181 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS---------------------NRLTHVD-- 181 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS---------------------SCCSBCC--
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC---------------------CcCCccc--
Confidence 54332 2332 23455555555555532211111111 333333333333 3333322
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcE
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQ 820 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~ 820 (951)
+..+++|+.|++++|.+.. +...++|++|++++|.... +|. ..+++|+.|++++|.++.. ..+..+++|+.
T Consensus 182 ~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~ 252 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVE 252 (390)
T ss_dssp GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE-EEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred cccccccceeecccccccc-----cCCCCcceEEECCCCeeee-ccc--cccccccEEECCCCCCccc-HHHcCCCCccE
Confidence 2334444444444443221 1222344444444443221 121 1123444444444444433 23444444444
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCC
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~ 900 (951)
|++++|.... ..|..+..+++|+.|+|++|.++.+|..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|
T Consensus 253 L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 253 VDLSYNELEK----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp EECCSSCCCE----EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred EECCCCcCCC----cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 4444444433 133344444444444444444444444444444455555554444444444444444555555444
Q ss_pred CCCCcCCCccccccEeeeccC
Q 002220 901 NMLQSIPELPRGLLRLNAQNC 921 (951)
Q Consensus 901 ~~l~~lp~~~~~L~~L~i~~C 921 (951)
+....-....++|+.|++.++
T Consensus 329 ~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 329 SIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCCCCCCCTTCCCSEEECCSS
T ss_pred ccceeCchhhccCCEEEcCCC
Confidence 322211122344444444443
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.8e-26 Score=277.18 Aligned_cols=134 Identities=21% Similarity=0.191 Sum_probs=105.7
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 610 (951)
.+|++.+....+++.+|.++++|++|++++|.+.++ +.+.+.-..+|++|++++|.++.+|.. | .+++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i---------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc---------ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 578888888889999999999999999999876433 333333335899999999999999865 3 78999
Q ss_pred eecccCCccccccccc-cccccccceeccCCCCCCC-cCCCC-CCCCCCcEEecCCCCCCCccCcccc
Q 002220 611 IALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLT-SIPEP-LEAPNLERINLCNCTNLSYIPLYVQ 675 (951)
Q Consensus 611 ~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~ 675 (951)
++|+|++|.++.++.. +.++++|++|++++|.+.. ..|.. ..+++|++|++++|......+..+.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 9999999999998864 8999999999999998754 34444 4789999999999865544444443
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=4e-26 Score=256.01 Aligned_cols=305 Identities=16% Similarity=0.124 Sum_probs=248.8
Q ss_pred CccccccceecccCCccccccccc-cccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcc
Q 002220 603 LDFDLENLIALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNL 680 (951)
Q Consensus 603 ~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 680 (951)
....+.+++.|+++++.++.+|.. +..+++|++|++++|.+....+ .+..+++|++|++++|......|..++.+++|
T Consensus 40 ~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 344689999999999999999987 6889999999999998766655 45689999999999988777677789999999
Q ss_pred cEEeccCCCCCcccCCCC--CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccC-cccccCCCCcEEecccccc
Q 002220 681 GSLSLKGCKSLRCFPRNI--HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVP-SSIECLTNLETLDLRLCER 757 (951)
Q Consensus 681 ~~L~L~~~~~l~~l~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~ 757 (951)
++|++++| .+..+|... .+++|+ .|++++|.+..++ ..+..+++|+.|++++|.+
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~---------------------~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLT---------------------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCC---------------------EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCc---------------------EEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 99999996 455565542 345454 4555556777665 4588999999999999987
Q ss_pred cccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccC
Q 002220 758 LKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLP 837 (951)
Q Consensus 758 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 837 (951)
... .+..+++|+.|++++|.... +...++|+.|++++|.+..+|.. .+++|+.|++++|.... .
T Consensus 178 ~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~-----~- 241 (390)
T 3o6n_A 178 THV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD-----T- 241 (390)
T ss_dssp SBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCC-----C-
T ss_pred Ccc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcc-----c-
Confidence 654 36678999999999986432 44567899999999999988654 35899999999998775 2
Q ss_pred CcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCC-c--cccc
Q 002220 838 TRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE-L--PRGL 913 (951)
Q Consensus 838 ~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~--~~~L 913 (951)
..+..+++|+.|++++|.+..+ |..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|+ ++.+|. + .++|
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 320 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcC
Confidence 3578899999999999999975 778899999999999999999999888899999999999985 456664 2 3899
Q ss_pred cEeeeccCcccccCCC-cCcchhhhhccccccccc
Q 002220 914 LRLNAQNCRRLRSLPE-LPSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 914 ~~L~i~~C~~L~~lp~-~~~~L~~l~~~~~~~~~~ 947 (951)
+.|++.+|+ +..+|. ..++|+.|++++|++-++
T Consensus 321 ~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 321 ENLYLDHNS-IVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSSC-CCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CEEECCCCc-cceeCchhhccCCEEEcCCCCccch
Confidence 999999976 555553 345799999999998764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.9e-26 Score=270.34 Aligned_cols=301 Identities=16% Similarity=0.095 Sum_probs=188.3
Q ss_pred cceEEEeecCCCCCCCCcc--ccccceecccCCcccccccc-ccccccccceeccCCCCCCCcCCCC-CCCCCCcEEecC
Q 002220 587 ELRYLYWHEYPLKTLPLDF--DLENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIPEP-LEAPNLERINLC 662 (951)
Q Consensus 587 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~L~ 662 (951)
+++.|++.+|.+..+|..+ .+++|++|+|++|.++.++. .+..+++|++|+|++|.+....|.. ..+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 4455555555555555432 45555556666555555543 4555556666666655554444432 355566666666
Q ss_pred CCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCccc
Q 002220 663 NCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSI 741 (951)
Q Consensus 663 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l 741 (951)
+|......+..++++++|++|++++|......|..+ .+++|++|++++|..-..-+..+.+|+.|++++|.+..++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~--- 208 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA--- 208 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE---
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc---
Confidence 554332222234555666666665543222222222 4555555555554322211233456667777777666443
Q ss_pred ccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcE
Q 002220 742 ECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQ 820 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~ 820 (951)
..++|+.|++++|.+....+. + .++|+.|++++|.... +..+..+++|+.|++++|.+..+ |..+..+++|+.
T Consensus 209 -~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 209 -IPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp -CCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -CCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 345788888888765443222 2 3678888888887544 35577888888888888888755 567788888888
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCC
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~ 900 (951)
|+|++|.... +|..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+| +..+++|+.|+|++|
T Consensus 283 L~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 283 LYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp EECTTSCCCE-----EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred EECCCCCCCC-----CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 8888887765 455567788888888888888888877777888888888888887775 667788888888887
Q ss_pred CCC
Q 002220 901 NML 903 (951)
Q Consensus 901 ~~l 903 (951)
+.-
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 753
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.4e-25 Score=255.17 Aligned_cols=305 Identities=16% Similarity=0.143 Sum_probs=181.3
Q ss_pred hhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCccccccccc
Q 002220 547 RAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKG 626 (951)
Q Consensus 547 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~ 626 (951)
..+.++++|++|++++|.+.++| ++..+ ++|++|++++|.++.+| ...+++|++|++++|.++.++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~----------~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT----------GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT----------TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--
T ss_pred cChhHcCCCCEEEccCCCcccCh----------hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--
Confidence 35778899999999988765432 23333 47889999998888886 447888888888888888874
Q ss_pred cccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCcee
Q 002220 627 QKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEI 706 (951)
Q Consensus 627 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L 706 (951)
+..+++|++|++++|.+.. ++ +..+++|++|++++|.... ++ ++.+++|++|++++|..+..++ ...+++|+.|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEE
Confidence 7788888888888887654 44 6688888888888876444 33 7788888888888876665552 2355666666
Q ss_pred eCcCCCCCCCCC-ccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCcc
Q 002220 707 DCAWCVNLTEFP-QISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGF 785 (951)
Q Consensus 707 ~l~~~~~l~~l~-~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 785 (951)
++++|. ++.+| ....+|+.|++++|.++.++ ++.+++|+.|++++|.+.+ +| +..+++|+.|++++|.....
T Consensus 176 ~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~- 248 (457)
T 3bz5_A 176 DCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL- 248 (457)
T ss_dssp ECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-
T ss_pred ECCCCc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc-
Confidence 666542 22232 11224455555555555442 4445555555555554433 23 44455555555555443222
Q ss_pred chhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-cCc---
Q 002220 786 PEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-IPE--- 861 (951)
Q Consensus 786 ~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~~--- 861 (951)
| ++.+++|+.|++++|.+. .|++++|.... .+| +..+++|+.|++++|.... +|.
T Consensus 249 ~--~~~l~~L~~L~l~~n~L~-------------~L~l~~n~~~~----~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 249 D--VSTLSKLTTLHCIQTDLL-------------EIDLTHNTQLI----YFQ--AEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp C--CTTCTTCCEEECTTCCCS-------------CCCCTTCTTCC----EEE--CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred C--HHHCCCCCEEeccCCCCC-------------EEECCCCccCC----ccc--ccccccCCEEECCCCcccceeccCCC
Confidence 1 233344444444333322 22233332221 122 2445556666665554321 221
Q ss_pred -----cCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCC
Q 002220 862 -----DIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCN 901 (951)
Q Consensus 862 -----~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~ 901 (951)
.+..+++|++|++++|+++.++ +..+++|+.|++++|+
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSC
T ss_pred cceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCC
Confidence 1344567777777777777663 6677777777777654
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=260.04 Aligned_cols=309 Identities=17% Similarity=0.141 Sum_probs=236.7
Q ss_pred ceEEEeecCCCCCCCCccccccceecccCCccccccc-cccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecCCCC
Q 002220 588 LRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLCNCT 665 (951)
Q Consensus 588 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 665 (951)
-+.++.+++.++.+|..+ ..++++|+|++|.++.++ ..+..+++|++|+|++|.+....|. +.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 356788888899999765 478999999999999885 4688899999999999987666554 5588999999999876
Q ss_pred CCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccC-ccccc
Q 002220 666 NLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVP-SSIEC 743 (951)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp-~~l~~ 743 (951)
.....+..+.++++|++|++++|......+..+ .++ +|+.|++++|.+..++ ..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~---------------------~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY---------------------NLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT---------------------TCCEEEECCTTCCEECTTSSTT
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccc---------------------cCCEEECCCCccceeChhhccC
Confidence 544444567888999999998865333323222 333 4455555666776553 46888
Q ss_pred CCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCc-ccCccccCCCCCcEEe
Q 002220 744 LTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVK-ELPPSFENLQGLRQLS 822 (951)
Q Consensus 744 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~ 822 (951)
+++|+.|++++|.+....+..+.++++|+.|++++|......+..+..+++|+.|++++|... .++.......+|+.|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 899999999999877776777889999999999998876666677888999999999987654 5666666667899999
Q ss_pred eccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC-ccCCCCCCCCEEEccCCCCccc-chhhcCCCCCCEEeeCCC
Q 002220 823 LIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP-EDIDCLSSLEVLDLSGSKIEIL-PTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 823 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~~ 900 (951)
+++|..... .+..+.++++|+.|+|++|.+..++ ..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|
T Consensus 231 l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 231 ITHCNLTAV----PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp EESSCCCSC----CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred CcCCccccc----CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 999887752 2245788899999999999988765 4578889999999999988866 467888999999999987
Q ss_pred CCCCcCCC----ccccccEeeeccCcc
Q 002220 901 NMLQSIPE----LPRGLLRLNAQNCRR 923 (951)
Q Consensus 901 ~~l~~lp~----~~~~L~~L~i~~C~~ 923 (951)
. ++.+|. -.++|+.|++.+++-
T Consensus 307 ~-l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 307 Q-LTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp C-CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred c-CceeCHhHcCCCcccCEEEccCCCc
Confidence 4 444543 236888888888763
No 44
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=2e-28 Score=231.82 Aligned_cols=119 Identities=20% Similarity=0.389 Sum_probs=111.1
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhHHHH
Q 002220 7 SCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCLDEL 86 (951)
Q Consensus 7 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~~el 86 (951)
+.++|||||||+++| +..|+.+|+++|+++|+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|+.|.||+.|+
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 358999999999999 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEeecCCcccccccccHHHHHHHH
Q 002220 87 VKILDCKNLNGQMVVPVFYQVDPSDVRKQTGCFRDAFVKH 126 (951)
Q Consensus 87 ~~~~~~~~~~~~~~~pv~~~~~p~~vr~~~~~~~~~~~~~ 126 (951)
.+|+++...++++|+||||+++|++||+|.|.|+++|+.+
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 9999988777889999999999999999999998766543
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.5e-25 Score=254.93 Aligned_cols=328 Identities=15% Similarity=0.137 Sum_probs=230.2
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcccccccee
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIA 612 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 612 (951)
.++++++....++ .|..+++|++|++++|.+.+++ +.. ..+|++|++++|.++.+| ...+++|++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~-----------~~~-l~~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD-----------LSQ-NTNLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC-----------CTT-CTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc-----------ccc-CCCCCEEECcCCCCceee-cCCCCcCCE
Confidence 4556666555553 6999999999999999876542 222 358999999999999987 458999999
Q ss_pred cccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCc
Q 002220 613 LHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLR 692 (951)
Q Consensus 613 L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 692 (951)
|++++|.++.++ +..+++|++|++++|.+.. + ++..+++|++|++++|.....+ .+..+++|++|++++| .++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KIT 183 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccc
Confidence 999999999986 8999999999999998765 3 4778999999999999777766 4789999999999996 566
Q ss_pred ccCCCCCCCCCceeeCcCCCCCCCCC-ccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCC
Q 002220 693 CFPRNIHFRSPIEIDCAWCVNLTEFP-QISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSL 771 (951)
Q Consensus 693 ~l~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 771 (951)
.+| ...+++|+.|++++|. ++.++ ....+|+.|++++|.++.+| +..+++|+.|++++|.+.+.. +..+++|
T Consensus 184 ~l~-l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L 256 (457)
T 3bz5_A 184 ELD-VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKL 256 (457)
T ss_dssp CCC-CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred eec-cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCC
Confidence 676 4478999999999865 33333 33468999999999999998 889999999999999877654 3455566
Q ss_pred CEEeccCCCCCCccchhcccCCCCcEEEcccCCCc-ccCccccCCCCCcEEeeccCCCCccCCcc----cCCcCCCCCCC
Q 002220 772 GSLLLAFCSNLEGFPEILEKMELLETLDLERTGVK-ELPPSFENLQGLRQLSLIGCSELKCSGWV----LPTRISKLSSL 846 (951)
Q Consensus 772 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L 846 (951)
+.|++++| +|+.|++++|.+. .+| +..+++|+.|++++|......... -.-.++++++|
T Consensus 257 ~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 257 TTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp CEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 65555443 2333344443322 222 233444444444444322210000 00013445677
Q ss_pred CEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhh-------------cCCCCCCEEeeCCCCCCCcCCC
Q 002220 847 ERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSI-------------GQLSRLRQLNLLDCNMLQSIPE 908 (951)
Q Consensus 847 ~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l-------------~~l~~L~~L~L~~~~~l~~lp~ 908 (951)
+.|++++|+++.++ +..+++|+.|++++|+++.++ .+ ..+..|..+++++|+....+|.
T Consensus 321 ~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 321 VYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCT
T ss_pred CEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc-ccccccccCCcEEecceeeecCccccccCcEEEEcCh
Confidence 77777777777763 667777777777777776543 11 1234566677777766666653
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=8.8e-26 Score=267.36 Aligned_cols=306 Identities=16% Similarity=0.149 Sum_probs=241.2
Q ss_pred cCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC-cc-ccccceecccCCccccccccc-c
Q 002220 551 NMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL-DF-DLENLIALHLPYSEVEQIWKG-Q 627 (951)
Q Consensus 551 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l~~~-~ 627 (951)
.+++++.|++++|.+. .++..+..-.++|+.|++++|.+..+|. .+ .+++|++|+|++|.++.++.. +
T Consensus 49 ~l~~l~~l~l~~~~l~---------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR---------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEES---------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCCCCC---------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 4567788888776432 2333333333478888888888887764 33 678888888888888877654 6
Q ss_pred ccccccceeccCCCCCCCcCCCC-CCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCcee
Q 002220 628 KEAFKLKFIDLHDSHNLTSIPEP-LEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEI 706 (951)
Q Consensus 628 ~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L 706 (951)
..+++|++|+|++|.+....+.. ..+++|++|+|++|......|..+..+++|++|++++|. +..++ ...+++|+.|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~L 197 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHA 197 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC-GGGCTTCSEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC-hhhhhhhhhh
Confidence 78888888888888766555554 578888888888887666666678888888888888854 44443 2357788888
Q ss_pred eCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc
Q 002220 707 DCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP 786 (951)
Q Consensus 707 ~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 786 (951)
+++++. +..++ ...+|+.|++++|.+..+|..+ .++|+.|+|++|.+.+ +..+.++++|+.|++++|......|
T Consensus 198 ~l~~n~-l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 198 NVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp ECCSSC-CSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hcccCc-ccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 887753 33332 3347899999999999887654 3689999999998776 3668899999999999999888788
Q ss_pred hhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCC
Q 002220 787 EILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCL 866 (951)
Q Consensus 787 ~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l 866 (951)
..++.+++|+.|++++|.++.+|..+..+++|+.|+|++|.... +|..+..+++|+.|+|++|.+..+| +..+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~ 344 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK--LSTH 344 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC--CCTT
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCCCCcC--hhhc
Confidence 89999999999999999999998888889999999999998875 6667788999999999999999886 7788
Q ss_pred CCCCEEEccCCCCc
Q 002220 867 SSLEVLDLSGSKIE 880 (951)
Q Consensus 867 ~~L~~L~L~~n~l~ 880 (951)
++|+.|+|++|.+.
T Consensus 345 ~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 345 HTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCSEEECCSSCEE
T ss_pred CCCCEEEeeCCCCC
Confidence 99999999999887
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.6e-24 Score=234.12 Aligned_cols=262 Identities=17% Similarity=0.185 Sum_probs=170.4
Q ss_pred cceecccCCccccccccccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccC
Q 002220 609 NLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKG 687 (951)
Q Consensus 609 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 687 (951)
++++++++++.++.+|..+. ++|++|++++|.+....+ .+..+++|++|+|++|......|..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 34444444444444444332 355556666555444333 244566666666666655555566677777777777776
Q ss_pred CCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCc-ccccCCCCcEEecccccccc--ccccc
Q 002220 688 CKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLK--RVSTS 764 (951)
Q Consensus 688 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~--~~~~~ 764 (951)
|. ++.+|..+ +.+|+.|++++|.+..++. .+..+++|+.|++++|.+.. ..+..
T Consensus 110 n~-l~~l~~~~----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 110 NQ-LKELPEKM----------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp SC-CSBCCSSC----------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred Cc-CCccChhh----------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 43 33333321 1245555556666666654 46778888888888887643 45666
Q ss_pred ccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCCCC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKL 843 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 843 (951)
+.++++|++|++++|... .+|..+. ++|++|++++|.++.+ +..+..+++|+.|++++|.... ..+..+..+
T Consensus 167 ~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l 239 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA----VDNGSLANT 239 (330)
T ss_dssp GGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE----ECTTTGGGS
T ss_pred ccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce----eChhhccCC
Confidence 778888888888887643 3454332 6788888888888765 4567788888888888887665 244467777
Q ss_pred CCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccch-hhc------CCCCCCEEeeCCCCC
Q 002220 844 SSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPT-SIG------QLSRLRQLNLLDCNM 902 (951)
Q Consensus 844 ~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~------~l~~L~~L~L~~~~~ 902 (951)
++|+.|++++|.++.+|.++..+++|++|++++|.++.++. .+. ..++|+.|++++|+.
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 88888888888888888778788888888888888877763 222 236677777777664
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.3e-24 Score=237.77 Aligned_cols=262 Identities=17% Similarity=0.183 Sum_probs=169.1
Q ss_pred cceecccCCccccccccccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccC
Q 002220 609 NLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKG 687 (951)
Q Consensus 609 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 687 (951)
+++.++++++.++.+|..+. ++|++|++++|.+....+ .+..+++|++|++++|......|..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56666666666666665543 467777777776554444 345777777777777665555566777778888888877
Q ss_pred CCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcc-cccCCCCcEEecccccccc--ccccc
Q 002220 688 CKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSS-IECLTNLETLDLRLCERLK--RVSTS 764 (951)
Q Consensus 688 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~~--~~~~~ 764 (951)
|. +..+|.... .+|++|++++|.+..+|.. +..+++|+.|++++|.+.. ..+..
T Consensus 112 n~-l~~l~~~~~----------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 112 NH-LVEIPPNLP----------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp SC-CCSCCSSCC----------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred Cc-CCccCcccc----------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc
Confidence 43 334443221 3455555566666666643 6677777777777776642 45555
Q ss_pred ccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccC-ccccCCCCCcEEeeccCCCCccCCcccCCcCCCC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELP-PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKL 843 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 843 (951)
+..+ +|+.|++++|... .+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.... ..+..+..+
T Consensus 169 ~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~l 240 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM----IENGSLSFL 240 (332)
T ss_dssp SCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC----CCTTGGGGC
T ss_pred ccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc----CChhHhhCC
Confidence 6666 7777777777643 3444332 57777777777777664 456777777777777776655 234456677
Q ss_pred CCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccch-hhcC------CCCCCEEeeCCCCCC
Q 002220 844 SSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPT-SIGQ------LSRLRQLNLLDCNML 903 (951)
Q Consensus 844 ~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~------l~~L~~L~L~~~~~l 903 (951)
++|+.|++++|.++.+|..+..+++|+.|++++|.++.++. .+.. .++|+.|++++|+..
T Consensus 241 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 77777777777777777777777777777777777776652 2222 355677777776644
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=8.2e-24 Score=231.33 Aligned_cols=280 Identities=16% Similarity=0.178 Sum_probs=145.9
Q ss_pred ceEEEeecCCCCCCCCccccccceecccCCcccccccc-ccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecCCCC
Q 002220 588 LRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLCNCT 665 (951)
Q Consensus 588 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 665 (951)
++.++++++.++.+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+....|. +..+++|++|++++|.
T Consensus 33 l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 444444444444444332 2344555555555554443 344555555555555544433332 3345555555555543
Q ss_pred CCCccCcccccCCcccEEeccCCCCCcccCCC-C-CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCC---ccCcc
Q 002220 666 NLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRN-I-HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIE---EVPSS 740 (951)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~-~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~---~lp~~ 740 (951)
+..+|..+. ++|++|++++|. +..++.. + .+++|++|+++++ .+. ..+..
T Consensus 112 -l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~ 166 (330)
T 1xku_A 112 -LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN---------------------PLKSSGIENGA 166 (330)
T ss_dssp -CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSS---------------------CCCGGGBCTTG
T ss_pred -CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCC---------------------cCCccCcChhh
Confidence 223333332 455555555532 2222221 1 3344444443332 221 22334
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCc
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLR 819 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~ 819 (951)
+..+++|+.|++++|.+.. +|..+. ++|++|++++|......+..+..+++|+.|++++|.++.++. .+..+++|+
T Consensus 167 ~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp GGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred ccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 5556666666666655432 333222 566666666665544445566666666666666666665543 566666777
Q ss_pred EEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccC-C------CCCCCCEEEccCCCCcc--c-chhhcCC
Q 002220 820 QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI-D------CLSSLEVLDLSGSKIEI--L-PTSIGQL 889 (951)
Q Consensus 820 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l-~------~l~~L~~L~L~~n~l~~--l-~~~l~~l 889 (951)
.|++++|.... +|..+..+++|+.|++++|+++.++... . ..++|+.|++++|.+.. + |..+..+
T Consensus 244 ~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 244 ELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp EEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred EEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 77776666553 5555666677777777777776654321 1 24677788888887652 2 3567777
Q ss_pred CCCCEEeeCCCC
Q 002220 890 SRLRQLNLLDCN 901 (951)
Q Consensus 890 ~~L~~L~L~~~~ 901 (951)
++|+.++|++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 888888887763
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=5.7e-24 Score=232.70 Aligned_cols=220 Identities=18% Similarity=0.170 Sum_probs=114.8
Q ss_pred CcceEEEeecCCCCCCCC-cc-ccccceecccCCcccccc-ccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecC
Q 002220 586 EELRYLYWHEYPLKTLPL-DF-DLENLIALHLPYSEVEQI-WKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLC 662 (951)
Q Consensus 586 ~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~ 662 (951)
++|+.|++++|.++.++. .+ .+++|++|++++|.++.+ |..+..+++|++|++++|.+. .+|.... ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECC
Confidence 345555555555554433 12 455555555555555544 334555555555555555433 2221111 455555555
Q ss_pred CCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCcccc--ceeeccccCCCCCccCcc
Q 002220 663 NCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISG--KVVKLRLWYTPIEEVPSS 740 (951)
Q Consensus 663 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~--~L~~L~l~~~~l~~lp~~ 740 (951)
+|......+..+..+++|++|++++|.... ....+..+. +|+.|++++|.+..+|..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~~~~~~l~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFEPGAFDGLKLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSCTTSSCSCCCSCCBCCSSBCSSCCSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCCcccccCCccCEEECcCCCCCccCcc
Confidence 544333333344555555555555432110 001111111 455666666666666655
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcE
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQ 820 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~ 820 (951)
+. ++|+.|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|++++|.++.+|..+..+++|+.
T Consensus 191 ~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 191 LP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268 (332)
T ss_dssp SC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCE
T ss_pred cc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCE
Confidence 43 5666777776666555555666666666666666655544445566666666666666666666665666666666
Q ss_pred EeeccCCCCc
Q 002220 821 LSLIGCSELK 830 (951)
Q Consensus 821 L~l~~~~~~~ 830 (951)
|++++|....
T Consensus 269 L~l~~N~l~~ 278 (332)
T 2ft3_A 269 VYLHTNNITK 278 (332)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCCCCc
Confidence 6666655544
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.6e-24 Score=234.44 Aligned_cols=185 Identities=20% Similarity=0.235 Sum_probs=96.9
Q ss_pred cCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCC-CCcEEEcccCCCc-ccCccccC
Q 002220 737 VPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKME-LLETLDLERTGVK-ELPPSFEN 814 (951)
Q Consensus 737 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~i~-~l~~~~~~ 814 (951)
+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.....+|..+..++ +|+.|++++|.+. .+|..+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 334444555555555555555445555555555555555555554444555555554 5555555555555 44444554
Q ss_pred CCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCc-ccchhhcCCCCCC
Q 002220 815 LQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLR 893 (951)
Q Consensus 815 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~ 893 (951)
++ |+.|++++|.... ..|..+..+++|+.|++++|.++..+..+..+++|++|+|++|.++ .+|..+..+++|+
T Consensus 197 l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred Cc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 44 5555555555443 2444455555555555555555544334555555666666666555 4555555556666
Q ss_pred EEeeCCCCCCCcCCCc--cccccEeeeccCccccc
Q 002220 894 QLNLLDCNMLQSIPEL--PRGLLRLNAQNCRRLRS 926 (951)
Q Consensus 894 ~L~L~~~~~l~~lp~~--~~~L~~L~i~~C~~L~~ 926 (951)
.|+|++|+....+|.. .++|+.|++.+++.+..
T Consensus 272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred EEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 6666655544444432 23444455555444443
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=6.5e-25 Score=237.42 Aligned_cols=248 Identities=18% Similarity=0.210 Sum_probs=182.1
Q ss_pred cceecccCCcccc---ccccccccccccceeccCC-CCCCCcCCC-CCCCCCCcEEecCCCCCCCccCcccccCCcccEE
Q 002220 609 NLIALHLPYSEVE---QIWKGQKEAFKLKFIDLHD-SHNLTSIPE-PLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSL 683 (951)
Q Consensus 609 ~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~L~~-~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 683 (951)
+++.|+|++|.+. .+|..+..+++|++|++++ |.+...+|. +..+++|++|++++|.....+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3445555555554 3555666667777777763 555545553 4466666666666665555666666777777777
Q ss_pred eccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCC-ccCcccccCCCCcEEeccccccccccc
Q 002220 684 SLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIE-EVPSSIECLTNLETLDLRLCERLKRVS 762 (951)
Q Consensus 684 ~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~~ 762 (951)
++++|. +. .+|..+..+++|++|++++|.+.+.+|
T Consensus 131 ~Ls~N~--------------------------------------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 131 DFSYNA--------------------------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp ECCSSE--------------------------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred eCCCCc--------------------------------------------cCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 766642 23 456667777888888888887777777
Q ss_pred ccccCCC-CCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc-cCccccCCCCCcEEeeccCCCCccCCcccCCcC
Q 002220 763 TSICKLK-SLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE-LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI 840 (951)
Q Consensus 763 ~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 840 (951)
..+.+++ +|++|++++|......|..+..++ |+.|++++|.++. .|..+..+++|+.|++++|.... ..|. +
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~-~ 240 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGK-V 240 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC----BGGG-C
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee----ecCc-c
Confidence 7788877 888888888877667777777776 8888888888874 45677888889999998888765 2333 7
Q ss_pred CCCCCCCEEeccCCCCC-CcCccCCCCCCCCEEEccCCCCc-ccchhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 841 SKLSSLERLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 841 ~~l~~L~~L~L~~~~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
..+++|+.|++++|.++ .+|..+..+++|++|+|++|.++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 78899999999999998 68888999999999999999998 67644 889999999999998776544
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=4.2e-23 Score=247.85 Aligned_cols=375 Identities=21% Similarity=0.198 Sum_probs=252.7
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-c-ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-F-DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 610 (951)
.+|++++....+++.+|.++++|++|++++|.+.++ +.+.+.-..+|++|++++|.++.+|.. + .+++|
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l---------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---------CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 567788888889999999999999999999876443 333333345899999999999998864 3 78999
Q ss_pred eecccCCcccccc--ccccccccccceeccCCCCCCCcCCCC----------------------------CCCCCCcEEe
Q 002220 611 IALHLPYSEVEQI--WKGQKEAFKLKFIDLHDSHNLTSIPEP----------------------------LEAPNLERIN 660 (951)
Q Consensus 611 ~~L~L~~~~i~~l--~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------------------~~l~~L~~L~ 660 (951)
++|+|++|.++.+ |..+..+++|++|++++|.+....+.. .....++.++
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~ 230 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence 9999999998854 567888999999999998764332210 0111122222
Q ss_pred cCCCCCC------------------------------Cc----------------------------cC-----------
Q 002220 661 LCNCTNL------------------------------SY----------------------------IP----------- 671 (951)
Q Consensus 661 L~~~~~~------------------------------~~----------------------------~~----------- 671 (951)
+.+|... .. .+
T Consensus 231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence 2221100 00 00
Q ss_pred -----------cccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCC-ccccceeeccccCCCCCc---
Q 002220 672 -----------LYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFP-QISGKVVKLRLWYTPIEE--- 736 (951)
Q Consensus 672 -----------~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~L~~L~l~~~~l~~--- 736 (951)
..+....+|+.|++.+|. +..++. ..+..|+.+.+..+......+ ....+|+.|+++.|.+..
T Consensus 311 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 311 FSLVSVTIERVKDFSYNFGWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp EEEESCEEEECGGGGSCCCCSEEEEESCE-ESSCCC-CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccchhhhhhhccccc-ccCcCc-ccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 011223345566666543 222221 245667777776644322222 134578888888887763
Q ss_pred cCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc-hhcccCCCCcEEEcccCCCccc-CccccC
Q 002220 737 VPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP-EILEKMELLETLDLERTGVKEL-PPSFEN 814 (951)
Q Consensus 737 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~i~~l-~~~~~~ 814 (951)
.+..+..+.+|+.|+++.+.... .+..+..+++|+.+++.++......+ ..+..+++|+.++++.|.+... +..+..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 34456677888888888776543 34457778888888888776544433 4567788888888888888755 445677
Q ss_pred CCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccc-hhhcCCCCC
Q 002220 815 LQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRL 892 (951)
Q Consensus 815 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L 892 (951)
+++|+.|++++|..... ..|..+..+++|+.|+|++|+++.+ |..+..+++|++|+|++|+++.++ ..+..+++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~---~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp CTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred chhhhhhhhhhcccccc---cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 78888888888765442 3566778888888888888888875 566788888888888888888776 557788888
Q ss_pred CEEeeCCCCCCCcCCC----ccccccEeeeccCc
Q 002220 893 RQLNLLDCNMLQSIPE----LPRGLLRLNAQNCR 922 (951)
Q Consensus 893 ~~L~L~~~~~l~~lp~----~~~~L~~L~i~~C~ 922 (951)
+.|+|++|+.....|. +|++|+.|+++++|
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8888888766555453 45678888887654
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.7e-23 Score=240.98 Aligned_cols=258 Identities=19% Similarity=0.213 Sum_probs=128.5
Q ss_pred CCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCccccccccccccccc
Q 002220 553 SNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFK 632 (951)
Q Consensus 553 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 632 (951)
.+++.|++++|.+..+|. . ++++|+.|++++|.++.+|. .+++|++|+|++|.++.+|. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~---------~---l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD---------C---LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCS---------C---CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTT
T ss_pred CCCcEEEecCCCcCccCh---------h---hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCC
Confidence 456666666665433322 1 12456666666666666665 44556666666665555554 4455
Q ss_pred cceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCC
Q 002220 633 LKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCV 712 (951)
Q Consensus 633 L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~ 712 (951)
|++|++++|.+.. +|. .+++|++|++++|. +..+|.. +++|++|++++ |
T Consensus 103 L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~-----------------------N- 151 (622)
T 3g06_A 103 LLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSD-----------------------N- 151 (622)
T ss_dssp CCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCS-----------------------S-
T ss_pred CCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcC-----------------------C-
Confidence 5555555554322 222 33444444444432 2223321 23344444443 2
Q ss_pred CCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccC
Q 002220 713 NLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKM 792 (951)
Q Consensus 713 ~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 792 (951)
.+..+|..+.+|+.|++++|.++.+| ..+++|+.|++++|.+.. +|. .+++|+.|++++|... .+|. .+
T Consensus 152 ~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~ 220 (622)
T 3g06_A 152 QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LP 220 (622)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CC
T ss_pred cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CC
Confidence 23344444456666666667776666 345666666666665432 222 2345555555555432 2332 13
Q ss_pred CCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEE
Q 002220 793 ELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVL 872 (951)
Q Consensus 793 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L 872 (951)
++|+.|++++|.++.+| ..+++|+.|++++|.+.. +|. .+++|+.|+|++|.++.+|..+..+++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~-----lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS-----LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc-----CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence 45555555555555544 233455555555554433 222 3344555555555555555555555555555
Q ss_pred EccCCCCc
Q 002220 873 DLSGSKIE 880 (951)
Q Consensus 873 ~L~~n~l~ 880 (951)
+|++|.++
T Consensus 290 ~L~~N~l~ 297 (622)
T 3g06_A 290 NLEGNPLS 297 (622)
T ss_dssp ECCSCCCC
T ss_pred EecCCCCC
Confidence 55555544
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3e-23 Score=225.70 Aligned_cols=127 Identities=30% Similarity=0.453 Sum_probs=85.9
Q ss_pred CCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCC
Q 002220 768 LKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLE 847 (951)
Q Consensus 768 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 847 (951)
+++|++|++++|... .+|..++.+++|++|++++|.+..+|..+..+++|+.|++++|.... .+|..+.++++|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR----NYPPIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh----hhHHHhcCCCCCC
Confidence 556666666665433 55556666777777777777777666667777777777777766655 3666677777777
Q ss_pred EEeccCCCCC-CcCccCCCCCCCCEEEccCCCCc-ccchhhcCCCCCCEEeeCC
Q 002220 848 RLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLD 899 (951)
Q Consensus 848 ~L~L~~~~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~ 899 (951)
.|+|++|++. .+|..+..+++|++|+|++|.+. .+|..+.++++|+.+++..
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7777776655 36666777777777777776443 6777777777777777764
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.5e-22 Score=236.69 Aligned_cols=262 Identities=21% Similarity=0.212 Sum_probs=218.0
Q ss_pred CcceEEEeecCCCCCCCCccccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCC
Q 002220 586 EELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCT 665 (951)
Q Consensus 586 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~ 665 (951)
.+++.|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|.+. .+|. .+++|++|+|++|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc
Confidence 358999999999999998765 899999999999999987 5789999999999854 4555 78999999999975
Q ss_pred CCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCC
Q 002220 666 NLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLT 745 (951)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~ 745 (951)
+..+|. .+++|++|++++|. ++.+|....+|+.|++++|.+..+|.. ++
T Consensus 113 -l~~l~~---~l~~L~~L~L~~N~------------------------l~~lp~~l~~L~~L~Ls~N~l~~l~~~---~~ 161 (622)
T 3g06_A 113 -LTHLPA---LPSGLCKLWIFGNQ------------------------LTSLPVLPPGLQELSVSDNQLASLPAL---PS 161 (622)
T ss_dssp -CCCCCC---CCTTCCEEECCSSC------------------------CSCCCCCCTTCCEEECCSSCCSCCCCC---CT
T ss_pred -CCCCCC---CCCCcCEEECCCCC------------------------CCcCCCCCCCCCEEECcCCcCCCcCCc---cC
Confidence 444555 56778888888753 333444456899999999999998863 57
Q ss_pred CCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeecc
Q 002220 746 NLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIG 825 (951)
Q Consensus 746 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 825 (951)
+|+.|++++|.+.. +| ..+++|+.|++++|... .+|. .+++|+.|++++|.++.+|.. +++|+.|++++
T Consensus 162 ~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~ 230 (622)
T 3g06_A 162 ELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSG 230 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCS
T ss_pred CCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccC
Confidence 89999999987655 55 55789999999999754 4554 358999999999999998853 58999999999
Q ss_pred CCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCc
Q 002220 826 CSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
|.+.. +| ..+++|+.|+|++|.++.+|. .+++|+.|+|++|+++.+|..+.++++|+.|+|++|+....
T Consensus 231 N~L~~-----lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 231 NRLTS-----LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp SCCSC-----CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CccCc-----CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 98776 44 456899999999999999987 67899999999999999999999999999999999987655
Q ss_pred CC
Q 002220 906 IP 907 (951)
Q Consensus 906 lp 907 (951)
.|
T Consensus 300 ~~ 301 (622)
T 3g06_A 300 TL 301 (622)
T ss_dssp HH
T ss_pred CH
Confidence 44
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=231.11 Aligned_cols=271 Identities=17% Similarity=0.141 Sum_probs=174.6
Q ss_pred EEeecCCCCCCCCccccccceecccCCcccccccc-ccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecCCCCCCC
Q 002220 591 LYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLCNCTNLS 668 (951)
Q Consensus 591 L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~ 668 (951)
.+.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+....+. +.++++|++|++++|....
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 5666777777776543 477777777777777765 467777777777777766554443 4466777777777765443
Q ss_pred ccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCc--ccccCCC
Q 002220 669 YIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPS--SIECLTN 746 (951)
Q Consensus 669 ~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~--~l~~l~~ 746 (951)
..+..+..+++|++|++++| .+..+|. .+..+++
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n--------------------------------------------~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGN--------------------------------------------PYKTLGETSLFSHLTK 150 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTC--------------------------------------------CCSSSCSSCSCTTCTT
T ss_pred CCHhHhCCCccCCEEECCCC--------------------------------------------CCcccCchhhhccCCC
Confidence 33333666677777776664 3333433 3556666
Q ss_pred CcEEecccccc-cccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcc-ccCCCCCcEEeec
Q 002220 747 LETLDLRLCER-LKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPS-FENLQGLRQLSLI 824 (951)
Q Consensus 747 L~~L~Ls~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~ 824 (951)
|++|++++|.. ....+..+.++++|++|++++|......|..++.+++|++|++++|.+..+|.. +..+++|+.|+++
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 66666666643 333345566666777777766665555566666677777777777776665543 2346677777777
Q ss_pred cCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEccCCCCcccchh-hcCCCCCCEEeeC
Q 002220 825 GCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDLSGSKIEILPTS-IGQLSRLRQLNLL 898 (951)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~ 898 (951)
+|.........++ .......++.++++++.+.. +|..+..+++|++|+|++|+++.+|.. +..+++|+.|+|+
T Consensus 231 ~n~l~~~~~~~l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 231 DTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp SCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCccccccccccc-cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 7765543211111 12345567777887777763 677778888888888888888888865 4788888888888
Q ss_pred CCCCCCcCC
Q 002220 899 DCNMLQSIP 907 (951)
Q Consensus 899 ~~~~l~~lp 907 (951)
+|+.....|
T Consensus 310 ~N~~~~~~~ 318 (353)
T 2z80_A 310 TNPWDCSCP 318 (353)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCcCC
Confidence 887666554
No 58
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=1.1e-25 Score=208.74 Aligned_cols=136 Identities=17% Similarity=0.245 Sum_probs=93.0
Q ss_pred CCCCCCcccEEEcccccccccchHHHHHHHHHh--CCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchh
Q 002220 4 SSSSCCKFDVFLSFRGEDTRDNFTSHLYAALCR--KKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKW 81 (951)
Q Consensus 4 s~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~w 81 (951)
|......|||||||+++| ..||.+|+++|++ +|+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 445677999999999999 4689999999998 699999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEEeecCCccc----ccccccHHHHHHHHHHHhCCChHHHHHHHHHH
Q 002220 82 CLDELVKILDCKNLNGQMVVPVFYQVDPSDV----RKQTGCFRDAFVKHQKQFKDMPEKAQNWKAAL 144 (951)
Q Consensus 82 c~~el~~~~~~~~~~~~~~~pv~~~~~p~~v----r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al 144 (951)
|..|+..|+.+...+..+||||++++++.++ +....... ...+..+....+.+.+|++++
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 9999999999874444588899998875544 44322111 112233333446677777654
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.2e-23 Score=222.24 Aligned_cols=166 Identities=28% Similarity=0.430 Sum_probs=129.9
Q ss_pred CCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcccc
Q 002220 734 IEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFE 813 (951)
Q Consensus 734 l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~ 813 (951)
+..+|..+..+++|++|++++|...+.+|..+.. . .++..++++++|++|++++|.++.+|..+.
T Consensus 139 l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~ 203 (328)
T 4fcg_A 139 LRALPASIASLNRLRELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIRSLPASIA 203 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCCCCCGGGG
T ss_pred cccCcHHHhcCcCCCEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcCcchHhhc
Confidence 3445555556666666666665555555543322 0 112235669999999999999999999999
Q ss_pred CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-cCccCCCCCCCCEEEccCCCCc-ccchhhcCCCC
Q 002220 814 NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-IPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSR 891 (951)
Q Consensus 814 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~ 891 (951)
.+++|+.|++++|.... +|..+..+++|+.|++++|++.. +|..+..+++|++|+|++|.+. .+|..+..+++
T Consensus 204 ~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 99999999999998876 66678999999999999998775 8888999999999999998554 88889999999
Q ss_pred CCEEeeCCCCCCCcCCCcc---ccccEeeec
Q 002220 892 LRQLNLLDCNMLQSIPELP---RGLLRLNAQ 919 (951)
Q Consensus 892 L~~L~L~~~~~l~~lp~~~---~~L~~L~i~ 919 (951)
|+.|+|++|+.++.+|... ++|+.+.+.
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 9999999999999999755 444444443
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1.8e-25 Score=257.13 Aligned_cols=354 Identities=14% Similarity=0.088 Sum_probs=210.5
Q ss_pred hccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCC--cc-ccc----cceecccCCcccc
Q 002220 549 FANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPL--DF-DLE----NLIALHLPYSEVE 621 (951)
Q Consensus 549 f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~--~~-~l~----~L~~L~L~~~~i~ 621 (951)
|..+++|+.|++++|.+.... ...++..+..+ ++|++|++++|.+..... .+ .+. +|++|+|++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~----~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEAR----CKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHH----HHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred HhhcCCccEEEccCCCCCHHH----HHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 566667777777665432100 00111112222 356666666665543110 00 122 4666666666555
Q ss_pred -----ccccccccccccceeccCCCCCCCcCCC------CCCCCCCcEEecCCCCCCCc----cCcccccCCcccEEecc
Q 002220 622 -----QIWKGQKEAFKLKFIDLHDSHNLTSIPE------PLEAPNLERINLCNCTNLSY----IPLYVQNFHNLGSLSLK 686 (951)
Q Consensus 622 -----~l~~~~~~l~~L~~L~L~~~~~~~~~~~------~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~ 686 (951)
.++..+..+++|++|++++|.+....+. ....++|++|++++|..... ++..+..+++|++|+++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 2344455555666666665553221110 11234555555555543332 23334445555555555
Q ss_pred CCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCc-----cCcccccCCCCcEEecccccccccc
Q 002220 687 GCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEE-----VPSSIECLTNLETLDLRLCERLKRV 761 (951)
Q Consensus 687 ~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~Ls~~~~~~~~ 761 (951)
+|......+..+. ..++....+|+.|++++|.+.. ++..+..+++|++|++++|.+....
T Consensus 179 ~n~i~~~~~~~l~---------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 179 NNDINEAGVRVLC---------------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp SSBCHHHHHHHHH---------------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred CCCcchHHHHHHH---------------HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 5431110000000 0000112356667777777765 5677888999999999999765542
Q ss_pred -----cccccCCCCCCEEeccCCCCCCc----cchhcccCCCCcEEEcccCCCccc-----Cccc-cCCCCCcEEeeccC
Q 002220 762 -----STSICKLKSLGSLLLAFCSNLEG----FPEILEKMELLETLDLERTGVKEL-----PPSF-ENLQGLRQLSLIGC 826 (951)
Q Consensus 762 -----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~~l-----~~~~-~~l~~L~~L~l~~~ 826 (951)
+..+..+++|++|++++|..... ++..+..+++|++|++++|.+... ...+ ...++|+.|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 22233688999999999975543 677788899999999999988632 2222 23469999999999
Q ss_pred CCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-C----ccCC-CCCCCCEEEccCCCCc-----ccchhhcCCCCCCEE
Q 002220 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-P----EDID-CLSSLEVLDLSGSKIE-----ILPTSIGQLSRLRQL 895 (951)
Q Consensus 827 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~----~~l~-~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L 895 (951)
.........++..+..+++|+.|++++|.+... + ..+. ..++|++|+|++|.++ .+|..+..+++|+.|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 876532222456677789999999999988752 2 2333 2679999999999998 678888889999999
Q ss_pred eeCCCCCCCc--------CCCccccccEeeeccCc
Q 002220 896 NLLDCNMLQS--------IPELPRGLLRLNAQNCR 922 (951)
Q Consensus 896 ~L~~~~~l~~--------lp~~~~~L~~L~i~~C~ 922 (951)
++++|+.-.. +|....+|+.|.+.++.
T Consensus 404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999865432 33334578888877754
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6.8e-22 Score=225.07 Aligned_cols=242 Identities=24% Similarity=0.289 Sum_probs=130.7
Q ss_pred ceEEEeecCCCCCCCCccccccceecccCCccccccc-cccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCC
Q 002220 588 LRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCT 665 (951)
Q Consensus 588 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~ 665 (951)
.+.++..+..++.+|..+. .+++.|+|++|.++.++ ..+.++++|++|+|++|.+....+ .+.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4455666666666665442 45555666666555554 234555555555555554332222 12234444444444433
Q ss_pred CCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCc-ccccC
Q 002220 666 NLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPS-SIECL 744 (951)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~-~l~~l 744 (951)
.....+..+..+++|++|++++ |.+..+|. .+..+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~--------------------------------------------N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRN--------------------------------------------NPIESIPSYAFNRI 159 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCS--------------------------------------------CCCCEECTTTTTTC
T ss_pred CCeeCHhHhhccccCceeeCCC--------------------------------------------CcccccCHHHhhhC
Confidence 2222222333333333333333 33444433 35566
Q ss_pred CCCcEEecccccccccccc-cccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEe
Q 002220 745 TNLETLDLRLCERLKRVST-SICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLS 822 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~ 822 (951)
++|+.|++++|+....++. .+.++++|++|++++|.. +.+|. +..+++|+.|++++|.++.+ |..|..+++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 7777777776555554443 466666777777766653 33443 56666666666666666655 44566666666666
Q ss_pred eccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCc
Q 002220 823 LIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 823 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~ 880 (951)
+++|.+.. ..+..+.++++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 238 L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 238 MIQSQIQV----IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCCCE----ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCceeE----EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 66666555 244556666666666666666666543 3455666666666666544
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=7.8e-22 Score=225.45 Aligned_cols=242 Identities=21% Similarity=0.240 Sum_probs=140.8
Q ss_pred ceEEEeecCCCCCCCCccccccceecccCCccccccc-cccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecCCCC
Q 002220 588 LRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLCNCT 665 (951)
Q Consensus 588 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 665 (951)
.+.++..+..++.+|..+ .+++++|+|++|.|+.++ ..+.++++|++|+|++|.+....+. +.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 445666666666666543 245666666666665553 3355555555555555544333322 2244555555555443
Q ss_pred CCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCc-ccccC
Q 002220 666 NLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPS-SIECL 744 (951)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~-~l~~l 744 (951)
.....+..+..+++|++|++++ |.+..+|. .+..+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~--------------------------------------------N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRN--------------------------------------------NPIESIPSYAFNRV 170 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCS--------------------------------------------CCCCEECTTTTTTC
T ss_pred CCccChhhhcccCCCCEEECCC--------------------------------------------CCcceeCHhHHhcC
Confidence 3222222344444444444443 33444443 45667
Q ss_pred CCCcEEecccccccccccc-cccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEe
Q 002220 745 TNLETLDLRLCERLKRVST-SICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLS 822 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~ 822 (951)
++|+.|++++|+.++.++. .+.++++|+.|++++|... .+| .+..+++|+.|++++|.++.+ |..|..+++|+.|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 7777777777665555543 4667777777777777543 334 366677777777777777655 44567777777777
Q ss_pred eccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCc
Q 002220 823 LIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 823 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~ 880 (951)
+++|.... ..+..+.++++|+.|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 249 L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 249 VMNSQVSL----IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eCCCcCce----ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77776655 245556677777777777777776553 3456677777777777554
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=4.5e-22 Score=215.04 Aligned_cols=164 Identities=27% Similarity=0.359 Sum_probs=94.5
Q ss_pred ccCcccccCCCCcEEeccccccccccc-ccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc--cCccc
Q 002220 736 EVPSSIECLTNLETLDLRLCERLKRVS-TSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE--LPPSF 812 (951)
Q Consensus 736 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~--l~~~~ 812 (951)
.+|..+..+++|++|++++|.+....+ ..+.++++|++|++++|......+..+..+++|++|++++|.+.. +|..+
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 344444555555555555554443332 345555566666666555444455555566666666666666653 45556
Q ss_pred cCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCccc-chhhcCCC
Q 002220 813 ENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIEIL-PTSIGQLS 890 (951)
Q Consensus 813 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~ 890 (951)
..+++|+.|++++|.... ..|..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|.++.. |..+..++
T Consensus 172 ~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp TTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 666666666666665554 234556666666666666666665443 455666666666666666643 34555553
Q ss_pred -CCCEEeeCCCCCC
Q 002220 891 -RLRQLNLLDCNML 903 (951)
Q Consensus 891 -~L~~L~L~~~~~l 903 (951)
+|+.|+|++|+..
T Consensus 248 ~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 248 SSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTCCEE
T ss_pred ccCCEEEccCCCee
Confidence 6666766666543
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-23 Score=228.36 Aligned_cols=262 Identities=15% Similarity=0.086 Sum_probs=189.8
Q ss_pred ceecccCCccccccccc-cccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccC
Q 002220 610 LIALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKG 687 (951)
Q Consensus 610 L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 687 (951)
+...+++.+.+...+.. +..+++|++|++++|.+....| .+..+++|++|+|++|......+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 44555666666544443 3456677777777776655443 34567777777777765443333 67777777777777
Q ss_pred CCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccC
Q 002220 688 CKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICK 767 (951)
Q Consensus 688 ~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 767 (951)
|. +..++. . .+|+.|++++|.+..++.. .+++|+.|++++|.+....+..+..
T Consensus 90 n~-l~~l~~---~---------------------~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 90 NY-VQELLV---G---------------------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp SE-EEEEEE---C---------------------TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGG
T ss_pred Cc-cccccC---C---------------------CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhc
Confidence 53 222221 1 3455556666666666543 3677888888888877777777888
Q ss_pred CCCCCEEeccCCCCCCccchhc-ccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCC
Q 002220 768 LKSLGSLLLAFCSNLEGFPEIL-EKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSL 846 (951)
Q Consensus 768 l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 846 (951)
+++|++|++++|......+..+ ..+++|++|++++|.++.++.. ..+++|+.|++++|.... +|..+..+++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L 216 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF-----MGPEFQSAAGV 216 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE-----ECGGGGGGTTC
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCc-----chhhhcccCcc
Confidence 8888888888887666555555 4788999999999998877543 458899999999988776 45558888999
Q ss_pred CEEeccCCCCCCcCccCCCCCCCCEEEccCCCCc--ccchhhcCCCCCCEEeeCCCCCCCcC
Q 002220 847 ERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIE--ILPTSIGQLSRLRQLNLLDCNMLQSI 906 (951)
Q Consensus 847 ~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~~~~l~~l 906 (951)
+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+.++..
T Consensus 217 ~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 9999999999999988888999999999999888 67788888999999998876665543
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=8.1e-23 Score=220.90 Aligned_cols=241 Identities=19% Similarity=0.211 Sum_probs=174.1
Q ss_pred EEEeecCCCCCCCCccccccceecccCCccccccccc-cccccccceeccCCCCCCCc---CCCCCCCCCCcEEecCCCC
Q 002220 590 YLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLTS---IPEPLEAPNLERINLCNCT 665 (951)
Q Consensus 590 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~---~~~~~~l~~L~~L~L~~~~ 665 (951)
.++++++.++.+|..+ .++|++|+|++|.++.+|.. +..+++|++|++++|.+... ...+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 5666667777777644 35677777777777777665 56777777777777754322 1223355666666666654
Q ss_pred CCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccC--ccccc
Q 002220 666 NLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVP--SSIEC 743 (951)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp--~~l~~ 743 (951)
. ..+|..+..+++|++|++++| .+..++ ..+..
T Consensus 90 i-~~l~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~~ 124 (306)
T 2z66_A 90 V-ITMSSNFLGLEQLEHLDFQHS--------------------------------------------NLKQMSEFSVFLS 124 (306)
T ss_dssp E-EEEEEEEETCTTCCEEECTTS--------------------------------------------EEESSTTTTTTTT
T ss_pred c-ccChhhcCCCCCCCEEECCCC--------------------------------------------cccccccchhhhh
Confidence 2 345555666666666666653 333333 24667
Q ss_pred CCCCcEEecccccccccccccccCCCCCCEEeccCCCCCC-ccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEE
Q 002220 744 LTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLE-GFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQL 821 (951)
Q Consensus 744 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L 821 (951)
+++|++|++++|.+....+..+.++++|++|++++|.... ..|..+..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 7888888888888777777778888888888888887655 4677888889999999999998876 5678889999999
Q ss_pred eeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-cCccCCCCC-CCCEEEccCCCCc
Q 002220 822 SLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-IPEDIDCLS-SLEVLDLSGSKIE 880 (951)
Q Consensus 822 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~~~l~~l~-~L~~L~L~~n~l~ 880 (951)
++++|..... .+..+..+++|+.|++++|.+.. .|..+..++ +|++|+|++|.++
T Consensus 205 ~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 205 NMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTSCCSBC----CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ECCCCccCcc----ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 9999887763 34457888999999999999986 456677774 8999999999887
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1.1e-24 Score=250.43 Aligned_cols=359 Identities=18% Similarity=0.153 Sum_probs=242.4
Q ss_pred CCcceEEEeecCCCCCCCCc--c-ccccceecccCCcccc-----ccccccccccccceeccCCCCCCCcCC-CCC-CCC
Q 002220 585 PEELRYLYWHEYPLKTLPLD--F-DLENLIALHLPYSEVE-----QIWKGQKEAFKLKFIDLHDSHNLTSIP-EPL-EAP 654 (951)
Q Consensus 585 ~~~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~-~l~ 654 (951)
|++|+.|+++++.+...+.. + .+++|++|++++|.++ .++..+..+++|++|++++|.+....+ .+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 44677777777776644321 1 5677888888888877 445667777888888888887543221 111 233
Q ss_pred ----CCcEEecCCCCCCC----ccCcccccCCcccEEeccCCCCCcccCCCC------CCCCCceeeCcCCCCCCC----
Q 002220 655 ----NLERINLCNCTNLS----YIPLYVQNFHNLGSLSLKGCKSLRCFPRNI------HFRSPIEIDCAWCVNLTE---- 716 (951)
Q Consensus 655 ----~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~------~l~~L~~L~l~~~~~l~~---- 716 (951)
+|++|+|++|.... .++..+..+++|++|++++|......+..+ ..++|++|++++|..-..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888886553 457778888888888888875322111111 245788888888743221
Q ss_pred CCc---cccceeeccccCCCCCccC-cccc-----cCCCCcEEeccccccccc----ccccccCCCCCCEEeccCCCCCC
Q 002220 717 FPQ---ISGKVVKLRLWYTPIEEVP-SSIE-----CLTNLETLDLRLCERLKR----VSTSICKLKSLGSLLLAFCSNLE 783 (951)
Q Consensus 717 l~~---~~~~L~~L~l~~~~l~~lp-~~l~-----~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~ 783 (951)
++. ...+|+.|++++|.+.... ..+. ..++|+.|++++|.+... ++..+..+++|++|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 122 1357888999998876432 2222 366999999999987664 56778889999999999997543
Q ss_pred cc-----chhcccCCCCcEEEcccCCCcc-----cCccccCCCCCcEEeeccCCCCccCCcccCCcC-CCCCCCCEEecc
Q 002220 784 GF-----PEILEKMELLETLDLERTGVKE-----LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI-SKLSSLERLQLS 852 (951)
Q Consensus 784 ~~-----~~~l~~l~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~ 852 (951)
.. +..+..+++|++|++++|.++. ++..+..+++|++|++++|.........+...+ ...++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 2223468899999999999986 677788899999999999976542110111111 234689999999
Q ss_pred CCCCCC-----cCccCCCCCCCCEEEccCCCCcccc-hhh----cC-CCCCCEEeeCCCCCCC----cCCCc---ccccc
Q 002220 853 GCEIKE-----IPEDIDCLSSLEVLDLSGSKIEILP-TSI----GQ-LSRLRQLNLLDCNMLQ----SIPEL---PRGLL 914 (951)
Q Consensus 853 ~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l~-~~l----~~-l~~L~~L~L~~~~~l~----~lp~~---~~~L~ 914 (951)
+|.++. ++..+..+++|++|+|++|.++... ..+ .. .++|+.|+|++|+... .+|.. .++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 999885 4666777899999999999887432 223 22 7899999999986542 44432 37899
Q ss_pred EeeeccCccccc---------CCCcCcchhhhhcccccc
Q 002220 915 RLNAQNCRRLRS---------LPELPSCLEDQDFRNMHL 944 (951)
Q Consensus 915 ~L~i~~C~~L~~---------lp~~~~~L~~l~~~~~~~ 944 (951)
+|++++|+ +.. +|.....|+.|++.++..
T Consensus 402 ~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 402 ELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp EEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred EEECCCCC-CCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 99999985 332 333333577776666543
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=7e-23 Score=221.59 Aligned_cols=244 Identities=20% Similarity=0.189 Sum_probs=163.9
Q ss_pred ccccceecccCCccccccccccccccccceeccCCCCCC-CcCCCCC--------CCCCCcEEecCCCCCCCccCccc--
Q 002220 606 DLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNL-TSIPEPL--------EAPNLERINLCNCTNLSYIPLYV-- 674 (951)
Q Consensus 606 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~-~~~~~~~--------~l~~L~~L~L~~~~~~~~~~~~~-- 674 (951)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|... .+++|++|+|++|.....+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 345667777777777 666555443 667777766552 2223211 35666666666666555566544
Q ss_pred ccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccC-----CCCcE
Q 002220 675 QNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECL-----TNLET 749 (951)
Q Consensus 675 ~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l-----~~L~~ 749 (951)
..+++|++|++++| .+..+|..+..+ ++|++
T Consensus 118 ~~l~~L~~L~Ls~N--------------------------------------------~l~~~~~~~~~l~~~~~~~L~~ 153 (312)
T 1wwl_A 118 ATGPDLNILNLRNV--------------------------------------------SWATRDAWLAELQQWLKPGLKV 153 (312)
T ss_dssp CCSCCCSEEEEESC--------------------------------------------BCSSSSSHHHHHHTTCCTTCCE
T ss_pred hcCCCccEEEccCC--------------------------------------------CCcchhHHHHHHHHhhcCCCcE
Confidence 66666666666663 333334444444 67777
Q ss_pred EecccccccccccccccCCCCCCEEeccCCCCCCc--cchhc--ccCCCCcEEEcccCCCcccCc----cccCCCCCcEE
Q 002220 750 LDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEG--FPEIL--EKMELLETLDLERTGVKELPP----SFENLQGLRQL 821 (951)
Q Consensus 750 L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~i~~l~~----~~~~l~~L~~L 821 (951)
|++++|.+....+..+.++++|++|++++|..... ++..+ +.+++|++|++++|.++.++. .+..+++|+.|
T Consensus 154 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp EEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred EEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 77777777666666777777777777777765443 23333 677888888888888874432 24577888888
Q ss_pred eeccCCCCccCCcccC-CcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCC
Q 002220 822 SLIGCSELKCSGWVLP-TRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 822 ~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~ 900 (951)
++++|..... .| ..+..+++|+.|++++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|+|++|
T Consensus 234 ~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 234 DLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred ECCCCcCCcc----cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 8888877663 22 345667888899999988888887776 788999999998888875 888888999999887
Q ss_pred CCC
Q 002220 901 NML 903 (951)
Q Consensus 901 ~~l 903 (951)
+..
T Consensus 307 ~l~ 309 (312)
T 1wwl_A 307 PFL 309 (312)
T ss_dssp TTT
T ss_pred CCC
Confidence 643
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.8e-21 Score=207.93 Aligned_cols=136 Identities=24% Similarity=0.260 Sum_probs=62.2
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcE
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQ 820 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~ 820 (951)
+..+++|++|++++|.+....+..+.++++|++|++++|......+..++.+++|++|++++|.++.++.
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------- 170 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---------- 170 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT----------
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH----------
Confidence 3334444444444444433333334444444444444444332223334444444444444444444433
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeC
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLL 898 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~ 898 (951)
..+.++++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+| ..+..+++|+.|+|+
T Consensus 171 -----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 171 -----------------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred -----------------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 2344444455555555544443 444444555555555555555444 234555555555555
Q ss_pred CCCCC
Q 002220 899 DCNML 903 (951)
Q Consensus 899 ~~~~l 903 (951)
+|+..
T Consensus 234 ~N~~~ 238 (285)
T 1ozn_A 234 DNPWV 238 (285)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 54443
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=8.4e-21 Score=216.06 Aligned_cols=156 Identities=25% Similarity=0.305 Sum_probs=73.3
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccch-hcccCCCCcEEEcccCCCcccCccccCCCCCc
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPE-ILEKMELLETLDLERTGVKELPPSFENLQGLR 819 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~ 819 (951)
+..+++|+.|+|++|.+....+..+.++++|++|++++|..+..++. .+.++++|++|++++|.++.+|. +..+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccC
Confidence 34444555555555544433334444555555555554443333332 34445555555555555554442 44445555
Q ss_pred EEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEee
Q 002220 820 QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNL 897 (951)
Q Consensus 820 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L 897 (951)
.|+|++|.+.. ..|..+.++++|+.|+|++|.+..+ +..+..+++|+.|+|++|+++.+| ..+..+++|+.|+|
T Consensus 211 ~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 211 ELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp EEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred EEECCCCccCc----cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 55555554443 2334444555555555555555443 233444455555555555555444 22344455555555
Q ss_pred CCCC
Q 002220 898 LDCN 901 (951)
Q Consensus 898 ~~~~ 901 (951)
++|+
T Consensus 287 ~~Np 290 (440)
T 3zyj_A 287 HHNP 290 (440)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5444
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=216.28 Aligned_cols=270 Identities=17% Similarity=0.144 Sum_probs=202.6
Q ss_pred cccceecccCCccccccccccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEec
Q 002220 607 LENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSL 685 (951)
Q Consensus 607 l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 685 (951)
++.....+++++.++.+|..+. ++|++|++++|.+....+ .+..+++|++|++++|......+..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3344456778888888877654 377888888776554444 3456777777777776554444556666666666666
Q ss_pred cCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcc-cccCCCCcEEeccccccccccc-c
Q 002220 686 KGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSS-IECLTNLETLDLRLCERLKRVS-T 763 (951)
Q Consensus 686 ~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~-~ 763 (951)
++ |.++.+|.. +..+++|++|++++|.+....+ .
T Consensus 108 s~--------------------------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 143 (353)
T 2z80_A 108 SY--------------------------------------------NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143 (353)
T ss_dssp CS--------------------------------------------SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC
T ss_pred CC--------------------------------------------CcCCcCCHhHhCCCccCCEEECCCCCCcccCchh
Confidence 65 445566655 7889999999999998765433 4
Q ss_pred cccCCCCCCEEeccCCCCCCcc-chhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCC
Q 002220 764 SICKLKSLGSLLLAFCSNLEGF-PEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRIS 841 (951)
Q Consensus 764 ~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 841 (951)
.+.++++|++|++++|.....+ +..++.+++|++|++++|.+..+ |..+..+++|++|++++|..... .+..+.
T Consensus 144 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~ 219 (353)
T 2z80_A 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL----LEIFVD 219 (353)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH----HHHHHH
T ss_pred hhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc----hhhhhh
Confidence 7899999999999999655554 57799999999999999999876 77899999999999999987552 222344
Q ss_pred CCCCCCEEeccCCCCCCcCcc----CCCCCCCCEEEccCCCCc-----ccchhhcCCCCCCEEeeCCCCCCCcCCC----
Q 002220 842 KLSSLERLQLSGCEIKEIPED----IDCLSSLEVLDLSGSKIE-----ILPTSIGQLSRLRQLNLLDCNMLQSIPE---- 908 (951)
Q Consensus 842 ~l~~L~~L~L~~~~l~~l~~~----l~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~~~~l~~lp~---- 908 (951)
.+++|+.|++++|.++.++.. ....+.++.++++++.+. .+|..+..+++|+.|+|++|+ ++.+|.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~ 298 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFD 298 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHh
Confidence 688999999999999875421 245678999999998776 478889999999999999975 456774
Q ss_pred ccccccEeeeccCcccccC
Q 002220 909 LPRGLLRLNAQNCRRLRSL 927 (951)
Q Consensus 909 ~~~~L~~L~i~~C~~L~~l 927 (951)
-.++|+.|++.+|+-....
T Consensus 299 ~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 299 RLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TCTTCCEEECCSSCBCCCH
T ss_pred cCCCCCEEEeeCCCccCcC
Confidence 2378999999998754443
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.3e-21 Score=208.84 Aligned_cols=220 Identities=18% Similarity=0.181 Sum_probs=138.2
Q ss_pred eEEEeecCCCCCCCCccccccceecccCCcccccccc-ccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCC
Q 002220 589 RYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTN 666 (951)
Q Consensus 589 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 666 (951)
+.++++++.++.+|..+ +++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56677777777777654 4678888888888877764 46777778888887776655444 344677777777777653
Q ss_pred CCcc-CcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCcc-CcccccC
Q 002220 667 LSYI-PLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEV-PSSIECL 744 (951)
Q Consensus 667 ~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~l-p~~l~~l 744 (951)
+..+ |..+..+++|++|++++|. +..+ |..+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~--------------------------------------------l~~~~~~~~~~l 128 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG--------------------------------------------LQELGPGLFRGL 128 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC--------------------------------------------CCCCCTTTTTTC
T ss_pred ccccCHHHhcCCcCCCEEECCCCc--------------------------------------------CCEECHhHhhCC
Confidence 4443 5566666777777766643 3333 3345666
Q ss_pred CCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEee
Q 002220 745 TNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSL 823 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l 823 (951)
++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|++++|.+..+ |..+..+++|+.|++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 7777777777766655555677777777777777765444444567777777777777776654 445555555555555
Q ss_pred ccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC
Q 002220 824 IGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK 857 (951)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 857 (951)
++|..... .+..+..+++|+.|++++|++.
T Consensus 209 ~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 209 FANNLSAL----PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCSCC----CHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcCCcC----CHHHcccCcccCEEeccCCCcc
Confidence 55554431 2223444555555555555443
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.2e-20 Score=213.44 Aligned_cols=225 Identities=21% Similarity=0.172 Sum_probs=177.1
Q ss_pred cCCCcceEEEeecCCCCCCCCc-c-ccccceecccCCccccccc-cccccccccceeccCCCCCCCcCCC-CCCCCCCcE
Q 002220 583 CLPEELRYLYWHEYPLKTLPLD-F-DLENLIALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLER 658 (951)
Q Consensus 583 ~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~ 658 (951)
.++.+++.|++++|.++.++.. + .+++|++|+|++|.|+.++ ..+.++++|++|+|++|.+....+. +..+++|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4567999999999999988543 3 7999999999999999887 5689999999999999987766655 458999999
Q ss_pred EecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC--CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCc
Q 002220 659 INLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI--HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEE 736 (951)
Q Consensus 659 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~ 736 (951)
|+|++|......+..+.++++|++|++++|+.+..++... ++++|+ .|++++|.+..
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~---------------------~L~L~~n~l~~ 210 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK---------------------YLNLGMCNIKD 210 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC---------------------EEECTTSCCSS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC---------------------EEECCCCcccc
Confidence 9999987665555588999999999999988777776532 344444 44455566666
Q ss_pred cCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCC
Q 002220 737 VPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENL 815 (951)
Q Consensus 737 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l 815 (951)
+|. +..+++|+.|+|++|.+....|..+.++++|+.|++++|......+..+..+++|+.|++++|.++.+|. .+..+
T Consensus 211 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred ccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 653 6777888888888888777777778888888888888887766667777888888888888888887765 45677
Q ss_pred CCCcEEeeccCCCC
Q 002220 816 QGLRQLSLIGCSEL 829 (951)
Q Consensus 816 ~~L~~L~l~~~~~~ 829 (951)
++|+.|+|++|+..
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 88888888777643
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=9.6e-22 Score=225.69 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=166.9
Q ss_pred ccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeC
Q 002220 630 AFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDC 708 (951)
Q Consensus 630 l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l 708 (951)
+++|++|+|++|.+....| .+..+++|++|+|++|......| +..+++|++|+|++|. +..+|..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~~----------- 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLVG----------- 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEEC-----------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCCC-----------
Confidence 3356666666665544443 33456666666666655433333 5666666666666642 2222211
Q ss_pred cCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchh
Q 002220 709 AWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEI 788 (951)
Q Consensus 709 ~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 788 (951)
.+|+.|++++|.+..++.. .+++|+.|++++|.+.+..|..++++++|+.|++++|......|..
T Consensus 99 -------------~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 99 -------------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp -------------TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred -------------CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 3455555555666666542 4577888888888887777777888888888888888876666666
Q ss_pred cc-cCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCC
Q 002220 789 LE-KMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLS 867 (951)
Q Consensus 789 l~-~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~ 867 (951)
+. .+++|+.|++++|.++.++. ...+++|+.|+|++|.... +|..+..+++|+.|+|++|.++.+|..+..++
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 237 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcccchhhccCC
Confidence 65 78889999999988887754 3468889999999888776 45557888899999999999998888888889
Q ss_pred CCCEEEccCCCCc--ccchhhcCCCCCCEEeeC
Q 002220 868 SLEVLDLSGSKIE--ILPTSIGQLSRLRQLNLL 898 (951)
Q Consensus 868 ~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~ 898 (951)
+|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999887 677778888888888875
No 74
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.84 E-value=3.4e-22 Score=188.80 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=92.9
Q ss_pred CCCCcccEEEcccccccccchHHHHHHHHHhC--CCeEEecCcccCCCCCchHHHHHHhh-ccceEEEEecCCcccchhh
Q 002220 6 SSCCKFDVFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDEELRRGDDISPALLNAIQ-GSKISVIIFSKDYASSKWC 82 (951)
Q Consensus 6 ~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~-~s~~~i~v~s~~~~~s~wc 82 (951)
++++.|||||||+++| ..||.+|+++|+++ |+++|+|++|+.+|+.+.++|.+||+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4578999999999999 68999999999985 69999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhh-hcCCCeEEEEEeecCC
Q 002220 83 LDELVKILDCK-NLNGQMVVPVFYQVDP 109 (951)
Q Consensus 83 ~~el~~~~~~~-~~~~~~~~pv~~~~~p 109 (951)
..|+..|+++. ..++++||||+|++.+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999876 3345689999998754
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.2e-21 Score=211.84 Aligned_cols=240 Identities=21% Similarity=0.211 Sum_probs=184.9
Q ss_pred cceEEEeecCCCCCCCCccccccceecccCCccccc--cccccc-------cccccceeccCCCCCCCcCCC-C--CCCC
Q 002220 587 ELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQ--IWKGQK-------EAFKLKFIDLHDSHNLTSIPE-P--LEAP 654 (951)
Q Consensus 587 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~--l~~~~~-------~l~~L~~L~L~~~~~~~~~~~-~--~~l~ 654 (951)
+|+.|++.+|.+ .+|..+. ..|+.|+|++|.++. ++..+. .+++|++|++++|.+....|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 466666677777 6665442 338999999999864 444444 689999999999998877765 3 6899
Q ss_pred CCcEEecCCCCCCCccCcccccC-----CcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccc
Q 002220 655 NLERINLCNCTNLSYIPLYVQNF-----HNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRL 729 (951)
Q Consensus 655 ~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l 729 (951)
+|++|+|++|..... |..+..+ ++|++|++++|
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N----------------------------------------- 159 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQA----------------------------------------- 159 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESC-----------------------------------------
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCC-----------------------------------------
Confidence 999999999876555 7777666 77777777764
Q ss_pred cCCCCCccC-cccccCCCCcEEeccccccccc--ccccc--cCCCCCCEEeccCCCCCC--ccc-hhcccCCCCcEEEcc
Q 002220 730 WYTPIEEVP-SSIECLTNLETLDLRLCERLKR--VSTSI--CKLKSLGSLLLAFCSNLE--GFP-EILEKMELLETLDLE 801 (951)
Q Consensus 730 ~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~ 801 (951)
.+..++ ..++.+++|++|++++|.+.+. .+..+ .++++|++|++++|.... .++ ..+..+++|+.|+++
T Consensus 160 ---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 160 ---HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp ---SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred ---CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 344444 5677888999999999886654 33344 788999999999997552 222 345678999999999
Q ss_pred cCCCcccC--ccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCC
Q 002220 802 RTGVKELP--PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKI 879 (951)
Q Consensus 802 ~n~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l 879 (951)
+|.++..+ ..+..+++|+.|++++|.... +|..+. ++|+.|++++|+++.+|. +..+++|++|+|++|.+
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 99998755 456678999999999998875 555554 799999999999999977 88999999999999988
Q ss_pred cc
Q 002220 880 EI 881 (951)
Q Consensus 880 ~~ 881 (951)
+.
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 76
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.84 E-value=5.8e-22 Score=190.04 Aligned_cols=102 Identities=19% Similarity=0.367 Sum_probs=88.9
Q ss_pred CCCCcccEEEcccccccccchHHH-HHHHHHh--CCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhh
Q 002220 6 SSCCKFDVFLSFRGEDTRDNFTSH-LYAALCR--KKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWC 82 (951)
Q Consensus 6 ~~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc 82 (951)
.+.+.|||||||+++| .+||.+ |+++|++ +|+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|+.|.||
T Consensus 31 ~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 4678999999999999 589986 9999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hcCCCeEEEEEeecCC
Q 002220 83 LDELVKILDCK-NLNGQMVVPVFYQVDP 109 (951)
Q Consensus 83 ~~el~~~~~~~-~~~~~~~~pv~~~~~p 109 (951)
..|+..|+.+. ++++++||||+|+..|
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 99999998755 4556789999998654
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=3.8e-22 Score=216.37 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=182.0
Q ss_pred ccccceecccCCccccccc-cccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEe
Q 002220 606 DLENLIALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLS 684 (951)
Q Consensus 606 ~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 684 (951)
.+++|++|+|++|.++.++ ..+..+++|++|++++|.+....+ +..+++|++|++++|.. ..++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cccc----CCCCcCEEE
Confidence 3457777777777777665 457778888888888887654443 66778888888888653 2222 347888888
Q ss_pred ccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCc-ccccCCCCcEEecccccccccccc
Q 002220 685 LKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLKRVST 763 (951)
Q Consensus 685 L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~ 763 (951)
+++|. +..++. ..+.+|+.|++++|.+..++. .+..+++|+.|++++|.+....+.
T Consensus 106 l~~n~-l~~~~~----------------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 106 AANNN-ISRVSC----------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp CCSSC-CSEEEE----------------------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCCc-cCCcCc----------------------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 88854 222221 112356677777788887754 688899999999999988877776
Q ss_pred cc-cCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCC
Q 002220 764 SI-CKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISK 842 (951)
Q Consensus 764 ~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 842 (951)
.+ ..+++|++|++++|.... ++. ...+++|++|++++|.++.+|..+..+++|+.|++++|.... +|..+..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~ 235 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-----IEKALRF 235 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-----ECTTCCC
T ss_pred HHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-----hhhHhhc
Confidence 66 478999999999998544 343 345899999999999999999889999999999999998875 6777889
Q ss_pred CCCCCEEeccCCCCC--CcCccCCCCCCCCEEEccCC
Q 002220 843 LSSLERLQLSGCEIK--EIPEDIDCLSSLEVLDLSGS 877 (951)
Q Consensus 843 l~~L~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~~n 877 (951)
+++|+.|++++|.+. .+|.++..+++|+.|+++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 999999999999998 47888888999999998865
No 78
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.84 E-value=3.4e-22 Score=186.98 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=91.3
Q ss_pred CCCcccEEEcccccccccchHHH-HHHHHHhC--CCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhH
Q 002220 7 SCCKFDVFLSFRGEDTRDNFTSH-LYAALCRK--KIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCL 83 (951)
Q Consensus 7 ~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~ 83 (951)
..+.|||||||+++| ..||.+ |+++|+++ |+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 467899999999999 479997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeEEEEEeecC
Q 002220 84 DELVKILDCK-NLNGQMVVPVFYQVD 108 (951)
Q Consensus 84 ~el~~~~~~~-~~~~~~~~pv~~~~~ 108 (951)
.|+..|+.+. +.++++||||+|+..
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i 105 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPI 105 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 9999988644 556778999999744
No 79
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.82 E-value=5.8e-21 Score=180.13 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=90.7
Q ss_pred CcccEEEccccccc---------ccchHHHHHH-HHH-hCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcc
Q 002220 9 CKFDVFLSFRGEDT---------RDNFTSHLYA-ALC-RKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYA 77 (951)
Q Consensus 9 ~~~dvfis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~ 77 (951)
..|||||||+++|+ ++.||.++.. .|+ +.|+++|+|++|+.+|+.+.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 3568888665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hcCCCeEEEEEeecCCc
Q 002220 78 -SSKWCLDELVKILDCK-NLNGQMVVPVFYQVDPS 110 (951)
Q Consensus 78 -~s~wc~~el~~~~~~~-~~~~~~~~pv~~~~~p~ 110 (951)
.|.||..|+..|+.+. .+++++||||+++..+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999987 56678999999886543
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=9.4e-22 Score=233.78 Aligned_cols=367 Identities=14% Similarity=0.060 Sum_probs=238.7
Q ss_pred hhccCCCccEEEEcCCCCCCCCccCcceecCccccc-CCCcceEEEeecCCCC---CCCCcc-ccccceecccCCccccc
Q 002220 548 AFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLEC-LPEELRYLYWHEYPLK---TLPLDF-DLENLIALHLPYSEVEQ 622 (951)
Q Consensus 548 ~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~-l~~~L~~L~l~~~~l~---~lp~~~-~l~~L~~L~L~~~~i~~ 622 (951)
.+..+++|+.|++++|.+.. .....+.. .+.+|++|++++|... .++... .+++|++|+|++|.+..
T Consensus 107 l~~~~~~L~~L~L~~~~i~~--------~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 178 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSD--------LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCH--------HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC
T ss_pred HHhhCCCCCeEEeeccEecH--------HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC
Confidence 34478899999998764321 01111222 3445999999887621 111111 56889999999998753
Q ss_pred c-----ccccccccccceeccCCCCCC----CcCCCC-CCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCc
Q 002220 623 I-----WKGQKEAFKLKFIDLHDSHNL----TSIPEP-LEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLR 692 (951)
Q Consensus 623 l-----~~~~~~l~~L~~L~L~~~~~~----~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 692 (951)
. +.....+++|++|++++|... ..++.+ ..+++|++|++++|.. ..++..+..+++|++|+++.+....
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhccccccccc
Confidence 2 233567888999999988764 122222 2678999999998654 4467778888999999997543321
Q ss_pred ---ccCCCC-CCCCCceeeCcCCCCCCCCCc---cccceeeccccCCCCCc--cCcccccCCCCcEEecccccccccccc
Q 002220 693 ---CFPRNI-HFRSPIEIDCAWCVNLTEFPQ---ISGKVVKLRLWYTPIEE--VPSSIECLTNLETLDLRLCERLKRVST 763 (951)
Q Consensus 693 ---~l~~~~-~l~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~~~~ 763 (951)
..+..+ .+++|+.++++++ ....+|. ...+|++|++++|.+.. ++..+..+++|+.|+++++-....++.
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~ 336 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred chHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH
Confidence 112222 6778888888774 2333443 34588999999988653 233467889999999985433334455
Q ss_pred cccCCCCCCEEeccC----------CCCCCc--cchhcccCCCCcEEEcccCCCcc-cCcccc-CCCCCcEEeeccCC--
Q 002220 764 SICKLKSLGSLLLAF----------CSNLEG--FPEILEKMELLETLDLERTGVKE-LPPSFE-NLQGLRQLSLIGCS-- 827 (951)
Q Consensus 764 ~~~~l~~L~~L~l~~----------~~~~~~--~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~-~l~~L~~L~l~~~~-- 827 (951)
...++++|++|++++ |...+. ++.....+++|++|++..|.++. .+..+. .+++|+.|++++|.
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 556788999999994 544442 33445678999999998888763 223343 38899999997543
Q ss_pred -CCccCC--cccCCcCCCCCCCCEEeccCCC--CCC-cCccC-CCCCCCCEEEccCCCCc--ccchhhcCCCCCCEEeeC
Q 002220 828 -ELKCSG--WVLPTRISKLSSLERLQLSGCE--IKE-IPEDI-DCLSSLEVLDLSGSKIE--ILPTSIGQLSRLRQLNLL 898 (951)
Q Consensus 828 -~~~~~~--~~~~~~~~~l~~L~~L~L~~~~--l~~-l~~~l-~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~ 898 (951)
...... ..++..+.++++|+.|++++|. ++. .+..+ ..+++|++|+|++|.++ .++..+..+++|+.|+|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 222100 0122335568899999997654 443 22222 34788999999999887 355566788999999999
Q ss_pred CCCCCCc--CCC---ccccccEeeeccCccccc
Q 002220 899 DCNMLQS--IPE---LPRGLLRLNAQNCRRLRS 926 (951)
Q Consensus 899 ~~~~l~~--lp~---~~~~L~~L~i~~C~~L~~ 926 (951)
+|+ ++. ++. ..++|+.|++++|. ++.
T Consensus 497 ~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 497 GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 988 332 222 24789999999988 443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1e-19 Score=188.52 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=169.6
Q ss_pred CCCCCCCCccccceeeccccCCCCCccCc-ccccCCCCcEEeccccc-ccccccccccCCCCCCEEeccC-CCCCCccch
Q 002220 711 CVNLTEFPQISGKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCE-RLKRVSTSICKLKSLGSLLLAF-CSNLEGFPE 787 (951)
Q Consensus 711 ~~~l~~l~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~ 787 (951)
|..++.+|....+++.|++++|.++.+|. .+..+++|++|++++|. +....+..+.++++|++|++++ |......+.
T Consensus 20 c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp ECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 34466667655588999999999999987 68899999999999997 5555556789999999999998 665444456
Q ss_pred hcccCCCCcEEEcccCCCcccCccccCCCCCc---EEeeccC-CCCccCCcccCCcCCCCCCCC-EEeccCCCCCCcCcc
Q 002220 788 ILEKMELLETLDLERTGVKELPPSFENLQGLR---QLSLIGC-SELKCSGWVLPTRISKLSSLE-RLQLSGCEIKEIPED 862 (951)
Q Consensus 788 ~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~L~-~L~L~~~~l~~l~~~ 862 (951)
.+..+++|++|++++|.++.+|. +..+++|+ .|++++| .... ..+..+.++++|+ .|++++|.++.+|..
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~----i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS----IPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE----ECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh----cCcccccchhcceeEEEcCCCCCcccCHh
Confidence 78999999999999999999887 88888888 9999999 6655 2445688999999 999999999998876
Q ss_pred CCCCCCCCEEEccCCC-Ccccc-hhhcCC-CCCCEEeeCCCCCCCcCCC-ccccccEeeeccCccc
Q 002220 863 IDCLSSLEVLDLSGSK-IEILP-TSIGQL-SRLRQLNLLDCNMLQSIPE-LPRGLLRLNAQNCRRL 924 (951)
Q Consensus 863 l~~l~~L~~L~L~~n~-l~~l~-~~l~~l-~~L~~L~L~~~~~l~~lp~-~~~~L~~L~i~~C~~L 924 (951)
....++|+.|++++|. ++.+| ..+..+ ++|+.|++++|+ ++.+|. ..++|+.|++.+|..|
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 6555899999999994 99887 567888 999999999965 456664 5788999999888654
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=2.7e-21 Score=229.86 Aligned_cols=292 Identities=14% Similarity=0.058 Sum_probs=154.4
Q ss_pred cccceecccCCcccc-----ccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCC---CccCcccccCC
Q 002220 607 LENLIALHLPYSEVE-----QIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNL---SYIPLYVQNFH 678 (951)
Q Consensus 607 l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~---~~~~~~~~~l~ 678 (951)
+++|++|++++|.++ .++..+..+++|+.|++++|........+..+++|++|+++.+... ...+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 344555555554443 2222233444555555555443221112224445555555432211 11222344444
Q ss_pred cccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCC--C---CccccceeeccccCCCCC--ccCcccccCCCCcEE
Q 002220 679 NLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTE--F---PQISGKVVKLRLWYTPIE--EVPSSIECLTNLETL 750 (951)
Q Consensus 679 ~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~--l---~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L 750 (951)
+|+.|+++++ ....+|..+ .+++|++|++++|. +.. + .....+|+.|++. +.+. .++..+..+++|++|
T Consensus 271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 5555555442 222233222 34455555555544 211 1 1223455555555 2222 233334567788888
Q ss_pred eccc----------ccccc-c-ccccccCCCCCCEEeccCCCCCCccchhccc-CCCCcEEEcc----cCCCcccC----
Q 002220 751 DLRL----------CERLK-R-VSTSICKLKSLGSLLLAFCSNLEGFPEILEK-MELLETLDLE----RTGVKELP---- 809 (951)
Q Consensus 751 ~Ls~----------~~~~~-~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~----~n~i~~l~---- 809 (951)
++++ |.... . ++.....+++|++|+++.+......+..+.. +++|+.|+++ .|.++..|
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 8884 43322 2 2222445788888888655544444444544 7888888885 55666533
Q ss_pred --ccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC--cCccCCCCCCCCEEEccCCCCcc--cc
Q 002220 810 --PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE--IPEDIDCLSSLEVLDLSGSKIEI--LP 883 (951)
Q Consensus 810 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l~~~l~~l~~L~~L~L~~n~l~~--l~ 883 (951)
..+.++++|+.|++++|... ..+..+......+++|+.|+|++|.++. ++..+..+++|++|+|++|.++. ++
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGG-LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGG-CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCC-ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 22566788888888765531 1000122222346788888888888774 55556777888888888888762 44
Q ss_pred hhhcCCCCCCEEeeCCCCC
Q 002220 884 TSIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 884 ~~l~~l~~L~~L~L~~~~~ 902 (951)
.....+++|+.|+|++|+.
T Consensus 507 ~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHHCSSCCEEEEESCBC
T ss_pred HHHHhcCccCeeECcCCcC
Confidence 4556788888888888873
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.1e-20 Score=214.48 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=180.8
Q ss_pred cccceecccCCccccccc-cccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEec
Q 002220 607 LENLIALHLPYSEVEQIW-KGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSL 685 (951)
Q Consensus 607 l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 685 (951)
+++|++|+|++|.+..++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|.. ..+| ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEEC
Confidence 446777777777777664 457778888888888887655444 66788888888888743 3333 2378888888
Q ss_pred cCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCcc-CcccccCCCCcEEeccccccccccccc
Q 002220 686 KGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEV-PSSIECLTNLETLDLRLCERLKRVSTS 764 (951)
Q Consensus 686 ~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~~~~~ 764 (951)
++|. +..++. ..+.+|+.|++++|.+..+ |..++.+++|+.|+|++|.+.+..|..
T Consensus 107 ~~N~-l~~~~~----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 107 ANNN-ISRVSC----------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp CSSC-CCCEEE----------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cCCc-CCCCCc----------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 8864 222221 1123566777777888876 456888999999999999988888877
Q ss_pred cc-CCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCC
Q 002220 765 IC-KLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKL 843 (951)
Q Consensus 765 ~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 843 (951)
+. ++++|++|++++|..... +. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.... +|..+..+
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~l~~l 236 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFS 236 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCC
T ss_pred HhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-----cchhhccC
Confidence 76 799999999999985543 43 446999999999999999999889999999999999998875 67778899
Q ss_pred CCCCEEeccCCCCC--CcCccCCCCCCCCEEEcc
Q 002220 844 SSLERLQLSGCEIK--EIPEDIDCLSSLEVLDLS 875 (951)
Q Consensus 844 ~~L~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~ 875 (951)
++|+.|++++|.+. .+|.++..+++|+.|+++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999998 577888888888888775
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=5.5e-19 Score=187.54 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=104.2
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc--cCccccCCCCC
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE--LPPSFENLQGL 818 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~--l~~~~~~l~~L 818 (951)
+..+++|++|++++|.+....+..+.++++|++|++++|......+..++.+++|++|++++|.++. +|..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 4445555556665555555445555666666666666665444444446666667777777776664 45666677777
Q ss_pred cEEeeccCCCCccCCcccCCcCCCCCCCC----EEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccch-hhcCCCCCC
Q 002220 819 RQLSLIGCSELKCSGWVLPTRISKLSSLE----RLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPT-SIGQLSRLR 893 (951)
Q Consensus 819 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~ 893 (951)
+.|++++|..... .+..+..+++|+ .|++++|.+..++.......+|++|++++|.++.+|. .+..+++|+
T Consensus 152 ~~L~Ls~N~l~~~----~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 152 EHLDLSSNKIQSI----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp CEEECCSSCCCEE----CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CEEECCCCCCCcC----CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccccc
Confidence 7777777766552 233344444444 7788888887776665555678888888888887774 357788888
Q ss_pred EEeeCCCCCCCcCC
Q 002220 894 QLNLLDCNMLQSIP 907 (951)
Q Consensus 894 ~L~L~~~~~l~~lp 907 (951)
.|+|++|+.....|
T Consensus 228 ~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 228 KIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCcccccCC
Confidence 88888877655443
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=1.5e-18 Score=184.25 Aligned_cols=216 Identities=19% Similarity=0.151 Sum_probs=104.7
Q ss_pred EeecCCCCCCCCccccccceecccCCcccccccc-ccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCc
Q 002220 592 YWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSY 669 (951)
Q Consensus 592 ~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~ 669 (951)
+..+..+..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+..+++|++|++++|.....
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 34444555566543 2456666666666665554 45556666666666654433332 233445555555555443333
Q ss_pred cCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcE
Q 002220 670 IPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLET 749 (951)
Q Consensus 670 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 749 (951)
.+..+..+++|++|++++
T Consensus 92 ~~~~~~~l~~L~~L~l~~-------------------------------------------------------------- 109 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVE-------------------------------------------------------------- 109 (276)
T ss_dssp CTTTTTTCTTCCEEECTT--------------------------------------------------------------
T ss_pred ChhhhcCCccccEEECCC--------------------------------------------------------------
Confidence 333444444444444444
Q ss_pred EecccccccccccccccCCCCCCEEeccCCCCCC-ccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCc----EEee
Q 002220 750 LDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLE-GFPEILEKMELLETLDLERTGVKELPP-SFENLQGLR----QLSL 823 (951)
Q Consensus 750 L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~----~L~l 823 (951)
|.+....+..+.++++|++|++++|.... .+|..++.+++|++|++++|.++.++. .+..+++|+ .|++
T Consensus 110 -----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 110 -----TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp -----SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred -----CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 33322222233334444444444443322 134444445555555555555544332 233333333 5555
Q ss_pred ccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEccCCCCc
Q 002220 824 IGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~ 880 (951)
++|.... ++.......+|+.|++++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 185 s~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNF-----IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCE-----ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccc-----cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5555544 222222333566666666666665543 356667777777766654
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.5e-18 Score=178.99 Aligned_cols=190 Identities=27% Similarity=0.331 Sum_probs=157.3
Q ss_pred CCCCCc-cccceeeccccCCCCCccCc-ccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhccc
Q 002220 714 LTEFPQ-ISGKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEK 791 (951)
Q Consensus 714 l~~l~~-~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 791 (951)
++.+|. .+.+++.|++++|.+..+|. .+..+++|++|++++|.+....+..+.++++|++|++++|......+..+..
T Consensus 28 l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 107 (270)
T 2o6q_A 28 LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107 (270)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc
Confidence 333443 33467788888888888875 6889999999999999877666666789999999999999876666677889
Q ss_pred CCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCC
Q 002220 792 MELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSL 869 (951)
Q Consensus 792 l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L 869 (951)
+++|++|++++|.++.++. .+..+++|++|++++|..... .+..+..+++|+.|++++|.++.++. .+..+++|
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL----PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc----CHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 9999999999999998765 578999999999999987762 44557889999999999999998775 47889999
Q ss_pred CEEEccCCCCcccch-hhcCCCCCCEEeeCCCCCCCcCC
Q 002220 870 EVLDLSGSKIEILPT-SIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 870 ~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
++|+|++|.++.+|. .+..+++|+.|+|++|+.....+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999998884 57889999999999988655443
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=9.8e-21 Score=225.14 Aligned_cols=377 Identities=15% Similarity=0.115 Sum_probs=221.3
Q ss_pred hhhhccCCCccEEEEcCCCCCC-CCccCcc--ee---cCcccccCCCcceEEEeecCCCCCCC-Ccc--ccccceecccC
Q 002220 546 SRAFANMSNLRLLKFYMPEHRG-LPIMSSN--VR---LDEDLECLPEELRYLYWHEYPLKTLP-LDF--DLENLIALHLP 616 (951)
Q Consensus 546 ~~~f~~l~~Lr~L~l~~~~~~~-l~~~~~~--~~---~~~~~~~l~~~L~~L~l~~~~l~~lp-~~~--~l~~L~~L~L~ 616 (951)
...+.++++|+.|++.++.... ....... .. ....+....++|+.|++++|.+.... ..+ .+++|++|+|+
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 3456677788888887653100 0000000 00 00011112347888888877654321 111 46778888887
Q ss_pred Cc-cccc--cccccccccccceeccCCCCCCCc----CCCCC-CCCCCcEEecCCCC-CC--CccCcccccCCcccEEec
Q 002220 617 YS-EVEQ--IWKGQKEAFKLKFIDLHDSHNLTS----IPEPL-EAPNLERINLCNCT-NL--SYIPLYVQNFHNLGSLSL 685 (951)
Q Consensus 617 ~~-~i~~--l~~~~~~l~~L~~L~L~~~~~~~~----~~~~~-~l~~L~~L~L~~~~-~~--~~~~~~~~~l~~L~~L~L 685 (951)
+| .+.. ++.....+++|++|++++|.+... ++.+. .+++|++|++++|. .+ ..++..+.++++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 77 4443 444455677888888887764322 22233 56788888888765 11 112222345678888888
Q ss_pred cCCCCCcccCCCC-CCCCCceeeCcCC-------------------CCCCC-----------CCc---cccceeeccccC
Q 002220 686 KGCKSLRCFPRNI-HFRSPIEIDCAWC-------------------VNLTE-----------FPQ---ISGKVVKLRLWY 731 (951)
Q Consensus 686 ~~~~~l~~l~~~~-~l~~L~~L~l~~~-------------------~~l~~-----------l~~---~~~~L~~L~l~~ 731 (951)
++|..+..++..+ .+++|+.|+++.| .+++. ++. ...+|+.|++++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccC
Confidence 8775555544433 5666777764433 22221 222 245788888888
Q ss_pred CCCCc--cCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCC--------CCCCc--cchhcccCCCCcEEE
Q 002220 732 TPIEE--VPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFC--------SNLEG--FPEILEKMELLETLD 799 (951)
Q Consensus 732 ~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~--------~~~~~--~~~~l~~l~~L~~L~ 799 (951)
|.+.. ++..+..+++|+.|++++|-....++.....+++|++|++.+| ...+. +......+++|+.|.
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 88653 2333567889999999888222223333446888999988442 22222 122224588999998
Q ss_pred cccCCCccc-Cccc-cCCCCCcEEeec-----cCCCCccCC--cccCCcCCCCCCCCEEeccCCCCCC-cCccCC-CCCC
Q 002220 800 LERTGVKEL-PPSF-ENLQGLRQLSLI-----GCSELKCSG--WVLPTRISKLSSLERLQLSGCEIKE-IPEDID-CLSS 868 (951)
Q Consensus 800 l~~n~i~~l-~~~~-~~l~~L~~L~l~-----~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~l~~-l~~~l~-~l~~ 868 (951)
+..|.++.. +..+ ..+++|+.|+++ +|....... ..++..+.++++|+.|+|++ .++. .+..+. .+++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 888887632 2223 358899999998 333333100 01222356778999999977 5553 223333 3788
Q ss_pred CCEEEccCCCCccc-chhh-cCCCCCCEEeeCCCCCCCc----CCCccccccEeeeccCcc
Q 002220 869 LEVLDLSGSKIEIL-PTSI-GQLSRLRQLNLLDCNMLQS----IPELPRGLLRLNAQNCRR 923 (951)
Q Consensus 869 L~~L~L~~n~l~~l-~~~l-~~l~~L~~L~L~~~~~l~~----lp~~~~~L~~L~i~~C~~ 923 (951)
|+.|+|++|.++.. +..+ ..+++|+.|+|++|+.... +..-.++|+.|++++|+.
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999999988632 2233 6789999999999987221 112247899999999975
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=7.1e-18 Score=179.59 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=107.7
Q ss_pred cccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCcee
Q 002220 627 QKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEI 706 (951)
Q Consensus 627 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L 706 (951)
+.++++++.++++++.+....+.+ .++|+.|+|++|......+..+..+++|++|++++|. +..++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC---------
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC---------
Confidence 344555556666555433222222 2456666666665544455566677777777776642 2222111
Q ss_pred eCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc
Q 002220 707 DCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP 786 (951)
Q Consensus 707 ~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 786 (951)
..+++|+.|++++|.+. .+|..+.++++|++|++++|......+
T Consensus 74 -----------------------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~ 117 (290)
T 1p9a_G 74 -----------------------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117 (290)
T ss_dssp -----------------------------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred -----------------------------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH
Confidence 23344444444444332 333334444444555554444333333
Q ss_pred hhcccCCCCcEEEcccCCCcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCC
Q 002220 787 EILEKMELLETLDLERTGVKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDC 865 (951)
Q Consensus 787 ~~l~~l~~L~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~ 865 (951)
..|..+++|++|++++|.++.+|.. |..+++|+.|++++|..... .+..+..+++|+.|+|++|.++.+|..+..
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL----PAGLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc----CHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 4455555666666666666555442 45566666666666655541 223355666677777777777766666666
Q ss_pred CCCCCEEEccCCCCc
Q 002220 866 LSSLEVLDLSGSKIE 880 (951)
Q Consensus 866 l~~L~~L~L~~n~l~ 880 (951)
+++|+.|+|++|.+.
T Consensus 194 ~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCCSEEECCSCCBC
T ss_pred cccCCeEEeCCCCcc
Confidence 667777777766554
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=8e-18 Score=179.21 Aligned_cols=201 Identities=21% Similarity=0.249 Sum_probs=166.8
Q ss_pred cccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccC-cccccCCCCcEEec
Q 002220 674 VQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVP-SSIECLTNLETLDL 752 (951)
Q Consensus 674 ~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~L 752 (951)
+.++++|+++++++ ..++.+|.. .+.+++.|++++|.+..++ ..+..+++|+.|+|
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~~----------------------~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 62 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPPD----------------------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCSC----------------------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEEC
T ss_pred ccccCCccEEECCC-CCCCcCCCC----------------------CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEEC
Confidence 55667777777766 334444432 2346777888888888775 56899999999999
Q ss_pred ccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccC-ccccCCCCCcEEeeccCCCCcc
Q 002220 753 RLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELP-PSFENLQGLRQLSLIGCSELKC 831 (951)
Q Consensus 753 s~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~~~~~~~ 831 (951)
++|.+....+ ...+++|++|++++|.. ..+|..+..+++|+.|++++|.++.++ ..|..+++|+.|++++|.....
T Consensus 63 ~~n~l~~~~~--~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 63 DRAELTKLQV--DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp TTSCCCEEEC--CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCccCcccC--CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 9998765433 37899999999999975 477888899999999999999999887 4689999999999999988763
Q ss_pred CCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCC
Q 002220 832 SGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 832 ~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~ 904 (951)
.+..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+...
T Consensus 140 ----~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 ----PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ----ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 455678899999999999999998865 478999999999999999999999999999999999998754
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.6e-17 Score=175.41 Aligned_cols=135 Identities=25% Similarity=0.320 Sum_probs=98.9
Q ss_pred ccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcc-ccCCCCCcE
Q 002220 742 ECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPS-FENLQGLRQ 820 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~-~~~l~~L~~ 820 (951)
..+++|++|++++|.+....+..+.++++|++|++++|......+..++.+++|++|++++|.++.+|.. +..+++|+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 4566666666666665554455566677777777777766555566677788888888888888877654 677888888
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEccCCCCc
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~ 880 (951)
|++++|..... .+..+.++++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 162 L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 162 LRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 88888877662 444577888888888888888887654 677888999999888765
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=7.4e-20 Score=204.56 Aligned_cols=259 Identities=18% Similarity=0.140 Sum_probs=178.5
Q ss_pred cceecccCCccccccccccccccccceeccCCCCCCCcCC-----CCCCCCCCcEEecCCCCCC---CccCccc------
Q 002220 609 NLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIP-----EPLEAPNLERINLCNCTNL---SYIPLYV------ 674 (951)
Q Consensus 609 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~~L~~L~L~~~~~~---~~~~~~~------ 674 (951)
.|+...+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|... ..+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3445555566666777777778888888888886543321 2446677777777775321 1233322
Q ss_pred -ccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecc
Q 002220 675 -QNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLR 753 (951)
Q Consensus 675 -~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls 753 (951)
..+++|++|+|++|... ......+|..+..+++|++|+|+
T Consensus 90 l~~~~~L~~L~Ls~n~l~---------------------------------------~~~~~~l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFG---------------------------------------PTAQEPLIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp HTTCTTCCEEECCSCCCC---------------------------------------TTTHHHHHHHHHHCTTCCEEECC
T ss_pred HhhCCcccEEECCCCcCC---------------------------------------HHHHHHHHHHHHhCCCCCEEECc
Confidence 45666666666654210 01112356677888899999999
Q ss_pred cccccccccc----cccCC---------CCCCEEeccCCCCC-Cccc---hhcccCCCCcEEEcccCCCc------ccCc
Q 002220 754 LCERLKRVST----SICKL---------KSLGSLLLAFCSNL-EGFP---EILEKMELLETLDLERTGVK------ELPP 810 (951)
Q Consensus 754 ~~~~~~~~~~----~~~~l---------~~L~~L~l~~~~~~-~~~~---~~l~~l~~L~~L~l~~n~i~------~l~~ 810 (951)
+|.+....+. .+..+ ++|++|++++|... ..++ ..+..+++|++|++++|.+. -.+.
T Consensus 131 ~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 8887544333 33344 88999999998865 3344 46778889999999999887 2333
Q ss_pred cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-----cCccC--CCCCCCCEEEccCCCCcc--
Q 002220 811 SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-----IPEDI--DCLSSLEVLDLSGSKIEI-- 881 (951)
Q Consensus 811 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~l--~~l~~L~~L~L~~n~l~~-- 881 (951)
.+..+++|+.|+|++|.........+|..+..+++|+.|+|++|.++. ++..+ ..+++|++|+|++|.++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 778889999999999887421111366678888999999999999885 46666 448899999999999986
Q ss_pred ---cchhh-cCCCCCCEEeeCCCCCCCcC
Q 002220 882 ---LPTSI-GQLSRLRQLNLLDCNMLQSI 906 (951)
Q Consensus 882 ---l~~~l-~~l~~L~~L~L~~~~~l~~l 906 (951)
+|..+ .++++|+.|+|++|+.....
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 88777 66899999999998766544
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5.2e-18 Score=182.59 Aligned_cols=216 Identities=21% Similarity=0.264 Sum_probs=124.6
Q ss_pred cccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEecc
Q 002220 607 LENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLK 686 (951)
Q Consensus 607 l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 686 (951)
+.++..+.+..+.+..+. ....+++|+.|++++|.+ ..++.+..+++|++|++++|... .++. +..+++|++|+++
T Consensus 18 l~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 18 LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELS 93 (308)
T ss_dssp HHHHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECC
T ss_pred HHHHHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEcc
Confidence 344444455555544431 234566777777777653 33455556666666666665433 3333 6666666666666
Q ss_pred CCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccccccccccccc
Q 002220 687 GCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSIC 766 (951)
Q Consensus 687 ~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 766 (951)
+|. +..++ .+..+++|+.|++++|.+... +. +.
T Consensus 94 ~n~--------------------------------------------l~~~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~ 126 (308)
T 1h6u_A 94 GNP--------------------------------------------LKNVS-AIAGLQSIKTLDLTSTQITDV-TP-LA 126 (308)
T ss_dssp SCC--------------------------------------------CSCCG-GGTTCTTCCEEECTTSCCCCC-GG-GT
T ss_pred CCc--------------------------------------------CCCch-hhcCCCCCCEEECCCCCCCCc-hh-hc
Confidence 542 22222 245556666666666654332 22 55
Q ss_pred CCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCC
Q 002220 767 KLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSL 846 (951)
Q Consensus 767 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 846 (951)
.+++|++|++++|.... ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.... ++. +..+++|
T Consensus 127 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L 197 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-----ISP-LASLPNL 197 (308)
T ss_dssp TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-----CGG-GGGCTTC
T ss_pred CCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-----Chh-hcCCCCC
Confidence 66666666666665332 222 5666666666666666666554 6666667777776666554 222 5566677
Q ss_pred CEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc
Q 002220 847 ERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 847 ~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~ 883 (951)
+.|++++|.+..++. +..+++|+.|++++|.++..|
T Consensus 198 ~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 198 IEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred CEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCC
Confidence 777777777666653 566677777777777666555
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.7e-17 Score=175.31 Aligned_cols=196 Identities=22% Similarity=0.269 Sum_probs=151.4
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
+++.|++.++.+..++. +..+++|++|++++|.+.. + ..+.++++|++|++++|......+..++.+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 45566666677776653 7788899999999887655 2 3688889999999999887666666678899999999999
Q ss_pred CCCcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEccCCCCc
Q 002220 803 TGVKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 803 n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~ 880 (951)
|.++.++.. +..+++|++|++++|.... ..+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQS----LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCc----cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999877654 6888999999999987765 2445578889999999999998886654 578899999999999988
Q ss_pred ccch-hhcCCCCCCEEeeCCCCCCCcCCCccccccEeeeccCcccccCCC
Q 002220 881 ILPT-SIGQLSRLRQLNLLDCNMLQSIPELPRGLLRLNAQNCRRLRSLPE 929 (951)
Q Consensus 881 ~l~~-~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~~L~i~~C~~L~~lp~ 929 (951)
.++. .+..+++|+.|++++|+.....| +|+.|.++++..-..+|.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBC
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhCCCcccC
Confidence 7774 46889999999999987665543 567777666554444554
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=5.8e-19 Score=193.43 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=114.4
Q ss_pred ceecccCCccccccccccccc--cccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCc-cCcccccCCcccEEecc
Q 002220 610 LIALHLPYSEVEQIWKGQKEA--FKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSY-IPLYVQNFHNLGSLSLK 686 (951)
Q Consensus 610 L~~L~L~~~~i~~l~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~ 686 (951)
++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 344445544443 2334444 567777777766655555555666777777776653333 55556666666666666
Q ss_pred CCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccc-ccc-ccccc
Q 002220 687 GCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCE-RLK-RVSTS 764 (951)
Q Consensus 687 ~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~-~~~-~~~~~ 764 (951)
+|.... ..+..+..+++|++|++++|. +.. .++..
T Consensus 127 ~~~l~~-------------------------------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 127 GLRLSD-------------------------------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp TCBCCH-------------------------------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred CcccCH-------------------------------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 642110 122334445556666666552 222 24444
Q ss_pred ccCCCCCCEEeccCCCCCCc--cchhcccCC-CCcEEEcccCC--C--cccCccccCCCCCcEEeeccCCCCccCCcccC
Q 002220 765 ICKLKSLGSLLLAFCSNLEG--FPEILEKME-LLETLDLERTG--V--KELPPSFENLQGLRQLSLIGCSELKCSGWVLP 837 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~-~L~~L~l~~n~--i--~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 837 (951)
+.++++|++|++++|..++. ++..+..++ +|++|++++|. + ..++..+..+++|+.|++++|..... ..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~ 240 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---DCF 240 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---GGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---HHH
Confidence 55556666666666522222 344455556 66666666653 2 23444455566666666666653211 133
Q ss_pred CcCCCCCCCCEEeccCCC-CCC-cCccCCCCCCCCEEEccCC
Q 002220 838 TRISKLSSLERLQLSGCE-IKE-IPEDIDCLSSLEVLDLSGS 877 (951)
Q Consensus 838 ~~~~~l~~L~~L~L~~~~-l~~-l~~~l~~l~~L~~L~L~~n 877 (951)
..+..+++|+.|++++|. +.. ....+..+++|++|++++|
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 345555666666666663 111 1123445666666666666
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=188.12 Aligned_cols=155 Identities=21% Similarity=0.214 Sum_probs=103.5
Q ss_pred ccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCc--c--chhcccCCCCcEEEcccCCCcccCc----ccc
Q 002220 742 ECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEG--F--PEILEKMELLETLDLERTGVKELPP----SFE 813 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~n~i~~l~~----~~~ 813 (951)
..+++|++|+|++|.+....+..+.++++|++|++++|..... + +..++.+++|++|++++|.++.++. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 3456666666666666555556666666666666666654321 1 1223566777777777777765544 245
Q ss_pred CCCCCcEEeeccCCCCccCCcccCCcCCCC---CCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCC
Q 002220 814 NLQGLRQLSLIGCSELKCSGWVLPTRISKL---SSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLS 890 (951)
Q Consensus 814 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~ 890 (951)
.+++|++|++++|..... .|..+..+ ++|+.|+|++|.++.+|..+. ++|++|+|++|+++.+|. +..++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~ 294 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP 294 (310)
T ss_dssp HTCCCSSEECTTSCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC
T ss_pred cCCCCCEEECCCCCCCcc----chhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCC
Confidence 667777777777776652 34444444 688888888888888877664 688888888888887764 67788
Q ss_pred CCCEEeeCCCCCC
Q 002220 891 RLRQLNLLDCNML 903 (951)
Q Consensus 891 ~L~~L~L~~~~~l 903 (951)
+|+.|+|++|+..
T Consensus 295 ~L~~L~L~~N~l~ 307 (310)
T 4glp_A 295 EVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECSSTTTS
T ss_pred CccEEECcCCCCC
Confidence 8888888887653
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=1.1e-17 Score=173.26 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=99.8
Q ss_pred cccCCCCcEEeccc-ccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCc---EEEcccC-CCcccCc-cccC
Q 002220 741 IECLTNLETLDLRL-CERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLE---TLDLERT-GVKELPP-SFEN 814 (951)
Q Consensus 741 l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~n-~i~~l~~-~~~~ 814 (951)
+..+++|++|++++ |.+....+..+.++++|++|++++|... .+|. +..+++|+ .|++++| .++.++. .|..
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 44555666666665 4444333345556666666666666533 3444 56666666 7777777 7776655 3677
Q ss_pred CCCCc-EEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCC-CCCcC-ccCCCC-CCCCEEEccCCCCcccchhhcCCC
Q 002220 815 LQGLR-QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCE-IKEIP-EDIDCL-SSLEVLDLSGSKIEILPTSIGQLS 890 (951)
Q Consensus 815 l~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l~-~~l~~l-~~L~~L~L~~n~l~~l~~~l~~l~ 890 (951)
+++|+ .|++++|..... .+..+.. ++|+.|++++|. ++.+| ..+..+ ++|+.|++++|.++.+|.. .++
T Consensus 154 l~~L~~~L~l~~n~l~~i----~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~ 226 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSV----QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLE 226 (239)
T ss_dssp TBSSEEEEECCSCCCCEE----CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCT
T ss_pred hhcceeEEEcCCCCCccc----CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hhc
Confidence 77777 888877776642 2222333 678888888884 77765 446777 8888888888888888754 678
Q ss_pred CCCEEeeCCCCC
Q 002220 891 RLRQLNLLDCNM 902 (951)
Q Consensus 891 ~L~~L~L~~~~~ 902 (951)
+|+.|++++|..
T Consensus 227 ~L~~L~l~~~~~ 238 (239)
T 2xwt_C 227 HLKELIARNTWT 238 (239)
T ss_dssp TCSEEECTTC--
T ss_pred cCceeeccCccC
Confidence 888888887654
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=3.7e-17 Score=170.50 Aligned_cols=177 Identities=23% Similarity=0.322 Sum_probs=145.8
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
+.+.++++++.++.+|..+. ++|+.|+|++|.+....+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34567777788888887665 6889999998888887777888899999999999887776777788899999999999
Q ss_pred CCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCc
Q 002220 803 TGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 803 n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~ 880 (951)
|.++.++. .+..+++|++|++++|.+... .+..+..+++|+.|+|++|.++.+|. .+..+++|++|+|++|.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL----PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc----ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99987764 568889999999999887762 44557888999999999999998776 5788899999999999998
Q ss_pred ccch-hhcCCCCCCEEeeCCCCCCCc
Q 002220 881 ILPT-SIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 881 ~l~~-~l~~l~~L~~L~L~~~~~l~~ 905 (951)
.+|. .+..+++|+.|+|++|+....
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8774 678889999999999876554
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3.4e-17 Score=176.20 Aligned_cols=189 Identities=20% Similarity=0.266 Sum_probs=144.4
Q ss_pred CCCCCceeeCcCCCCCCCCCc--cccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEec
Q 002220 699 HFRSPIEIDCAWCVNLTEFPQ--ISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLL 776 (951)
Q Consensus 699 ~l~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l 776 (951)
.+++|+.|++++|. +..++. ...+|+.|++++|.+..++. +..+++|++|++++|.+.. ++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 57788888888863 444553 23578888888888888877 8888888888888887544 33 5778888888888
Q ss_pred cCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCC
Q 002220 777 AFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEI 856 (951)
Q Consensus 777 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 856 (951)
++|.... ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.... ++. +..+++|+.|++++|.+
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-----LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-----Chh-hcCCCCCCEEECCCCcc
Confidence 8887543 443 7888888888888888887765 7788888888888887665 333 77788888888888888
Q ss_pred CCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCC
Q 002220 857 KEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 857 ~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~ 902 (951)
+.++. +..+++|++|++++|.++.++ .+..+++|+.|++++|+.
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 87765 677888888888888888777 477888888888888664
No 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.9e-17 Score=174.90 Aligned_cols=226 Identities=20% Similarity=0.201 Sum_probs=159.7
Q ss_pred cccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcC
Q 002220 631 FKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAW 710 (951)
Q Consensus 631 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~ 710 (951)
.++..+++..+... .......+++|+.|++++|.. ..++ .+..+++|++|++++|
T Consensus 19 ~~l~~l~l~~~~~~-~~~~~~~l~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n---------------------- 73 (272)
T 3rfs_A 19 AETIKANLKKKSVT-DAVTQNELNSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGN---------------------- 73 (272)
T ss_dssp HHHHHHHHTCSCTT-SEECHHHHTTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTS----------------------
T ss_pred HHHHHHHhcCcccc-cccccccccceeeeeeCCCCc-cccc-ccccCCCCcEEECCCC----------------------
Confidence 34444555554322 222333566777777777543 2333 3566666777766664
Q ss_pred CCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcc
Q 002220 711 CVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILE 790 (951)
Q Consensus 711 ~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 790 (951)
.+..++ .+..+++|++|++++|.+....+..+.++++|++|++++|......+..++
T Consensus 74 ----------------------~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 74 ----------------------KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp ----------------------CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ----------------------CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 233332 466778888888888877766666678888888888888876665666678
Q ss_pred cCCCCcEEEcccCCCcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCC
Q 002220 791 KMELLETLDLERTGVKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSS 868 (951)
Q Consensus 791 ~l~~L~~L~l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~ 868 (951)
.+++|++|++++|.++.++.. +..+++|+.|++++|.... ..+..+..+++|+.|++++|.+..++.. +..+++
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS----LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc----cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 888899999988888877654 6788899999999887765 2455578889999999999999886654 688899
Q ss_pred CCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCCcccccc
Q 002220 869 LEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPELPRGLL 914 (951)
Q Consensus 869 L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~~L~ 914 (951)
|+.|++++|.+. ..+++|+.|+++.|.....+|....++.
T Consensus 207 L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 207 LQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 999999999764 3466788888888877777776544443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=1.8e-17 Score=182.06 Aligned_cols=225 Identities=21% Similarity=0.272 Sum_probs=179.3
Q ss_pred CCCCCCc-cccceeeccccCCCCCccCc-ccccCCCCcEEeccccccccccc-ccccCCCCCCEEec-cCCCCCCccchh
Q 002220 713 NLTEFPQ-ISGKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLKRVS-TSICKLKSLGSLLL-AFCSNLEGFPEI 788 (951)
Q Consensus 713 ~l~~l~~-~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~l-~~~~~~~~~~~~ 788 (951)
.++.+|. .+.++++|+|++|.|+.+|. .|.++++|++|+|++|.+.+.++ ..|.++++|.++.+ .+|......|..
T Consensus 20 ~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 20 KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 4556664 34578999999999999986 58999999999999999877765 45789999887555 445544445788
Q ss_pred cccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCC-CCCEEeccCCCCCCcCccCCCC
Q 002220 789 LEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLS-SLERLQLSGCEIKEIPEDIDCL 866 (951)
Q Consensus 789 l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~l~~~l~~l 866 (951)
|..+++|++|++++|.+..++. .+....++..|++.++..... ..+..+..+. .|+.|++++|.++.+|......
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccccCCChhhccc
Confidence 9999999999999999998875 455667888999987654442 2334455554 6889999999999999888778
Q ss_pred CCCCEEEccC-CCCcccc-hhhcCCCCCCEEeeCCCCCCCcCCC-ccccccEeeeccCcccccCCCcC--cchhhhhccc
Q 002220 867 SSLEVLDLSG-SKIEILP-TSIGQLSRLRQLNLLDCNMLQSIPE-LPRGLLRLNAQNCRRLRSLPELP--SCLEDQDFRN 941 (951)
Q Consensus 867 ~~L~~L~L~~-n~l~~l~-~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~i~~C~~L~~lp~~~--~~L~~l~~~~ 941 (951)
.+|++|++++ |.++.+| ..+..+++|+.|+|++| .++.+|. .+.+|+.|.+.+|..++.+|.+. ++|+.+++.+
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 8999999975 6899999 45799999999999996 5777775 67899999999999999999754 3577777654
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=4.6e-19 Score=210.70 Aligned_cols=354 Identities=14% Similarity=0.120 Sum_probs=219.3
Q ss_pred CcceEEEeecCCC----CCCCCcc-------------ccccceecccCCcccccc-ccccc-cccccceeccCCCCCCCc
Q 002220 586 EELRYLYWHEYPL----KTLPLDF-------------DLENLIALHLPYSEVEQI-WKGQK-EAFKLKFIDLHDSHNLTS 646 (951)
Q Consensus 586 ~~L~~L~l~~~~l----~~lp~~~-------------~l~~L~~L~L~~~~i~~l-~~~~~-~l~~L~~L~L~~~~~~~~ 646 (951)
++|+.|++.+++. .-.|..+ .+++|++|+|++|.+... +..+. .+++|++|++++|.....
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 4799999999762 1222211 467999999999987643 23343 689999999999954433
Q ss_pred --CCCCC-CCCCCcEEecCCCCCCCc----cCcccccCCcccEEeccCCC-CCc--ccCCCC-CCCCCceeeCcCCCCCC
Q 002220 647 --IPEPL-EAPNLERINLCNCTNLSY----IPLYVQNFHNLGSLSLKGCK-SLR--CFPRNI-HFRSPIEIDCAWCVNLT 715 (951)
Q Consensus 647 --~~~~~-~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~-~l~--~l~~~~-~l~~L~~L~l~~~~~l~ 715 (951)
++.+. .+++|++|+|++|..... ++.....+++|++|++++|. .+. .++... .+++|+.|++++|..+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 44444 789999999999874332 33334577899999999986 111 111111 47999999999986555
Q ss_pred CCCcc---ccceeeccccCC-------------------------------CCCccCcccccCCCCcEEeccccccccc-
Q 002220 716 EFPQI---SGKVVKLRLWYT-------------------------------PIEEVPSSIECLTNLETLDLRLCERLKR- 760 (951)
Q Consensus 716 ~l~~~---~~~L~~L~l~~~-------------------------------~l~~lp~~l~~l~~L~~L~Ls~~~~~~~- 760 (951)
.++.. ..+|+.|.+..+ ....++..+..+++|++|+|++|.+...
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 44432 235556654332 1123343344667788888887774332
Q ss_pred ccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc---------CCCcc--cCccccCCCCCcEEeeccCCCC
Q 002220 761 VSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER---------TGVKE--LPPSFENLQGLRQLSLIGCSEL 829 (951)
Q Consensus 761 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~---------n~i~~--l~~~~~~l~~L~~L~l~~~~~~ 829 (951)
+...+.++++|++|++++|.....++.....+++|++|++.+ +.++. +......+++|+.|.+..+...
T Consensus 306 l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 222355777888888877722122333344577888887733 23331 1111234678888866555543
Q ss_pred ccCCcccCCcCCCCCCCCEEecc--C----CCCCCcC------ccCCCCCCCCEEEccCCCCcc-cchhhcC-CCCCCEE
Q 002220 830 KCSGWVLPTRISKLSSLERLQLS--G----CEIKEIP------EDIDCLSSLEVLDLSGSKIEI-LPTSIGQ-LSRLRQL 895 (951)
Q Consensus 830 ~~~~~~~~~~~~~l~~L~~L~L~--~----~~l~~l~------~~l~~l~~L~~L~L~~n~l~~-l~~~l~~-l~~L~~L 895 (951)
.. ........+++|+.|+++ + +.++..| ..+..+++|+.|+|++ .++. .+..+.. +++|+.|
T Consensus 386 ~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 386 NA---ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp HH---HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred HH---HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence 31 111112357889999998 3 4555333 2245678999999977 5552 2234444 8899999
Q ss_pred eeCCCCCCCcCC----CccccccEeeeccCccccc-----CCCcCcchhhhhcccccc
Q 002220 896 NLLDCNMLQSIP----ELPRGLLRLNAQNCRRLRS-----LPELPSCLEDQDFRNMHL 944 (951)
Q Consensus 896 ~L~~~~~l~~lp----~~~~~L~~L~i~~C~~L~~-----lp~~~~~L~~l~~~~~~~ 944 (951)
+|++|......+ ...++|+.|++++|+. .. +....++|+.|++++|+.
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999987432211 1248899999999985 22 111124699999999876
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=5.1e-17 Score=178.48 Aligned_cols=237 Identities=22% Similarity=0.218 Sum_probs=126.0
Q ss_pred eEEEeecCCCCCCCCccccccceecccCCccccccccc-cccccccceeccCCCCCCCcCCC--CCCCCCCcEEecCCCC
Q 002220 589 RYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLTSIPE--PLEAPNLERINLCNCT 665 (951)
Q Consensus 589 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~L~~~~ 665 (951)
+.++.+++.++.+|..+ ++++++|+|++|+|+.+|.+ |.++++|++|+|++|.+...+|. +.++++|.++.+.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46777888888888765 46788888888888888764 67777777777777766554442 2245555443332222
Q ss_pred CCCcc-CcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccC
Q 002220 666 NLSYI-PLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECL 744 (951)
Q Consensus 666 ~~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l 744 (951)
.+..+ |..+..+++|++|++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~--------------------------------------------------------- 113 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISN--------------------------------------------------------- 113 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEE---------------------------------------------------------
T ss_pred cccccCchhhhhccccccccccc---------------------------------------------------------
Confidence 22222 33445555555555544
Q ss_pred CCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc-hhcccC-CCCcEEEcccCCCcccCccccCCCCCcEEe
Q 002220 745 TNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP-EILEKM-ELLETLDLERTGVKELPPSFENLQGLRQLS 822 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l-~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~ 822 (951)
|.+....+..+....++..|++.++..+..++ ..+..+ ..++.|++++|.++.++.......+|+.|+
T Consensus 114 ----------n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 114 ----------TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp ----------ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred ----------cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 33322222222233333344443333333222 123333 245556666666666655544555566666
Q ss_pred eccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCC-CCcccchhhcCCCCCCEEeeCC
Q 002220 823 LIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGS-KIEILPTSIGQLSRLRQLNLLD 899 (951)
Q Consensus 823 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~L~~ 899 (951)
+.+|..... ..+..|.++++|+.|+|++|+++.+|.. .+.+|+.|.+.++ .++.+| .+..+++|+.+++.+
T Consensus 184 l~~~n~l~~---i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 184 LSDNNNLEE---LPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCC---CCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hccCCcccC---CCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 654333331 1123455666666666666666666542 2445555555444 455555 455666666666643
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=4.8e-18 Score=186.16 Aligned_cols=185 Identities=21% Similarity=0.278 Sum_probs=146.1
Q ss_pred cCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCC--ccchhcccCCCCcEEEcccC-CCcc--cCcc
Q 002220 737 VPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLE--GFPEILEKMELLETLDLERT-GVKE--LPPS 811 (951)
Q Consensus 737 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n-~i~~--l~~~ 811 (951)
+|..+..+++|++|++++|.+....+..+..+++|++|++++|...+ .++..+..+++|++|++++| .++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 56668889999999999998887888889999999999999996555 36777899999999999999 8874 5677
Q ss_pred ccCCC-CCcEEeeccCCC-CccCCcccCCcCCCCCCCCEEeccCCC-CC-CcCccCCCCCCCCEEEccCCC-Ccc-cchh
Q 002220 812 FENLQ-GLRQLSLIGCSE-LKCSGWVLPTRISKLSSLERLQLSGCE-IK-EIPEDIDCLSSLEVLDLSGSK-IEI-LPTS 885 (951)
Q Consensus 812 ~~~l~-~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~-~l~~~l~~l~~L~~L~L~~n~-l~~-l~~~ 885 (951)
+..++ +|++|++++|.. ... ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +.. ....
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 88899 999999999952 211 1356667789999999999999 55 466778889999999999995 331 1135
Q ss_pred hcCCCCCCEEeeCCCCCCC--cCCCccccccEeeeccCccccc
Q 002220 886 IGQLSRLRQLNLLDCNMLQ--SIPELPRGLLRLNAQNCRRLRS 926 (951)
Q Consensus 886 l~~l~~L~~L~L~~~~~l~--~lp~~~~~L~~L~i~~C~~L~~ 926 (951)
+..+++|+.|+|++| +. .+..+..++..|++.+ ..++.
T Consensus 268 l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~-n~l~~ 307 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINC-SHFTT 307 (336)
T ss_dssp GGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESC-CCSCC
T ss_pred HhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEec-ccCcc
Confidence 788999999999998 22 1222445688888864 44554
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.8e-19 Score=199.83 Aligned_cols=255 Identities=16% Similarity=0.143 Sum_probs=178.5
Q ss_pred ccccceecccCCccccc-----cccccccccccceeccCCCCCC---CcCC-C-------CCCCCCCcEEecCCCCCCC-
Q 002220 606 DLENLIALHLPYSEVEQ-----IWKGQKEAFKLKFIDLHDSHNL---TSIP-E-------PLEAPNLERINLCNCTNLS- 668 (951)
Q Consensus 606 ~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~---~~~~-~-------~~~l~~L~~L~L~~~~~~~- 668 (951)
.+++|++|+|++|.+.. ++..+..+++|++|+|++|... ..+| . +..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 56778899999988874 3445778899999999987432 2223 1 2578999999999987665
Q ss_pred ---ccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccC-
Q 002220 669 ---YIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECL- 744 (951)
Q Consensus 669 ---~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l- 744 (951)
.+|..+..+++|++|+|++|......+ ..++..+..+
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~---------------------------------------~~l~~~l~~l~ 150 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAG---------------------------------------AKIARALQELA 150 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHH---------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHH---------------------------------------HHHHHHHHHHh
Confidence 467788889999999998864211000 0112223333
Q ss_pred --------CCCcEEeccccccc-cccc---ccccCCCCCCEEeccCCCCCC-----ccchhcccCCCCcEEEcccCCC--
Q 002220 745 --------TNLETLDLRLCERL-KRVS---TSICKLKSLGSLLLAFCSNLE-----GFPEILEKMELLETLDLERTGV-- 805 (951)
Q Consensus 745 --------~~L~~L~Ls~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~n~i-- 805 (951)
++|++|++++|.+. ..++ ..+..+++|++|++++|.... ..+..+..+++|+.|++++|.+
T Consensus 151 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred hhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 77888888888765 3333 456678888888888886542 2333677888899999998888
Q ss_pred ---cccCccccCCCCCcEEeeccCCCCccCCcccCCcC--CCCCCCCEEeccCCCCCC-----cCccC-CCCCCCCEEEc
Q 002220 806 ---KELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI--SKLSSLERLQLSGCEIKE-----IPEDI-DCLSSLEVLDL 874 (951)
Q Consensus 806 ---~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~-----l~~~l-~~l~~L~~L~L 874 (951)
..+|..+..+++|+.|+|++|.+.......++..+ ..+++|+.|+|++|.++. +|..+ .++++|++|+|
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 45677788888999999998887653211234555 348899999999999987 78777 66899999999
Q ss_pred cCCCCcccc---hhh-cCCCCCCEEeeCC
Q 002220 875 SGSKIEILP---TSI-GQLSRLRQLNLLD 899 (951)
Q Consensus 875 ~~n~l~~l~---~~l-~~l~~L~~L~L~~ 899 (951)
++|.++... ..+ ..+++++.+.+..
T Consensus 311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 311 NGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 999888443 222 3345555555544
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=177.60 Aligned_cols=200 Identities=19% Similarity=0.149 Sum_probs=117.3
Q ss_pred CCCCcEEecccccccccccccc--cCCCCCCEEeccCCCCCCccc----hhcccCCCCcEEEcccCCCcccC-ccccCCC
Q 002220 744 LTNLETLDLRLCERLKRVSTSI--CKLKSLGSLLLAFCSNLEGFP----EILEKMELLETLDLERTGVKELP-PSFENLQ 816 (951)
Q Consensus 744 l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~i~~l~-~~~~~l~ 816 (951)
+++|++|++++|.+.+..|..+ .++++|++|++++|......+ ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666666666555 666666666666666544322 22345666777777777666554 3566667
Q ss_pred CCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc----CCCCCCCCEEEccCCCCccc-chhhcCC--
Q 002220 817 GLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED----IDCLSSLEVLDLSGSKIEIL-PTSIGQL-- 889 (951)
Q Consensus 817 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~----l~~l~~L~~L~L~~n~l~~l-~~~l~~l-- 889 (951)
+|++|++++|......+...+..+..+++|+.|+|++|.++.++.. +..+++|++|+|++|.++.+ |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 7777777766654311111122235566677777777776654432 34566777777777766654 5455444
Q ss_pred -CCCCEEeeCCCCCCCcCCC-ccccccEeeeccCcccccCCC--cCcchhhhhccccccc
Q 002220 890 -SRLRQLNLLDCNMLQSIPE-LPRGLLRLNAQNCRRLRSLPE--LPSCLEDQDFRNMHLW 945 (951)
Q Consensus 890 -~~L~~L~L~~~~~l~~lp~-~~~~L~~L~i~~C~~L~~lp~--~~~~L~~l~~~~~~~~ 945 (951)
++|+.|+|++|..- .+|. ++++|+.|++++|. ++.+|. ..+.|+.|++++|++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCCCC
Confidence 56777777665433 4553 45667777776653 444433 2245777777777653
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=9.9e-19 Score=193.27 Aligned_cols=136 Identities=17% Similarity=0.105 Sum_probs=74.8
Q ss_pred CCCcEEeccccccccc----ccccccCCC-CCCEEeccCCCCCCccch----hcccC-CCCcEEEcccCCCcc-----cC
Q 002220 745 TNLETLDLRLCERLKR----VSTSICKLK-SLGSLLLAFCSNLEGFPE----ILEKM-ELLETLDLERTGVKE-----LP 809 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~~n~i~~-----l~ 809 (951)
++|++|+|++|.+... ++..+..++ +|++|++++|......+. .+..+ ++|++|++++|.+.. ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 4666666666655532 233334444 666666666654433332 23334 366777777666664 44
Q ss_pred ccccC-CCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC--------cCccCCCCCCCCEEEccCCCCc
Q 002220 810 PSFEN-LQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE--------IPEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 810 ~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--------l~~~l~~l~~L~~L~L~~n~l~ 880 (951)
..+.. .++|+.|+|++|.........+...+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 44444 34677777766665542211122334566667777777776332 3344556666777777777665
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=7.4e-18 Score=186.23 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=123.3
Q ss_pred cccC-CCCcEEecccccccccccccc----cC-CCCCCEEeccCCCCCC----ccchhcccCC-CCcEEEcccCCCcccC
Q 002220 741 IECL-TNLETLDLRLCERLKRVSTSI----CK-LKSLGSLLLAFCSNLE----GFPEILEKME-LLETLDLERTGVKELP 809 (951)
Q Consensus 741 l~~l-~~L~~L~Ls~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~L~l~~n~i~~l~ 809 (951)
+..+ ++|+.|++++|.+....+..+ .. .++|++|++++|.... .++..+..++ +|++|++++|.++...
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 4445 789999999998776655443 34 3699999999998664 3445556666 9999999999998654
Q ss_pred c-----cccCC-CCCcEEeeccCCCCccCCcccCCcCCC-CCCCCEEeccCCCCCCcC-----ccCCCCCCCCEEEccCC
Q 002220 810 P-----SFENL-QGLRQLSLIGCSELKCSGWVLPTRISK-LSSLERLQLSGCEIKEIP-----EDIDCLSSLEVLDLSGS 877 (951)
Q Consensus 810 ~-----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~~l~-----~~l~~l~~L~~L~L~~n 877 (951)
. .+..+ ++|+.|+|++|.+.......++..+.. .++|+.|+|++|.++..+ ..+..+++|++|+|++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 3 45566 599999999998766322224444555 459999999999998743 34578899999999999
Q ss_pred CCc--------ccchhhcCCCCCCEEeeCCCCCCCc
Q 002220 878 KIE--------ILPTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 878 ~l~--------~l~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
.+. .++..+..+++|+.|++++|+.-..
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 843 3445677889999999999875443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.4e-16 Score=180.66 Aligned_cols=181 Identities=22% Similarity=0.243 Sum_probs=113.0
Q ss_pred cccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccccc
Q 002220 679 NLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERL 758 (951)
Q Consensus 679 ~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~ 758 (951)
+|+.|++++|. ++.+|..+ +++ |+.|++++|.++.+| ..+++|+.|++++|.+.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l-~~~---------------------L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL-PPQ---------------------ITVLEITQNALISLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC-CTT---------------------CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred CccEEEeCCCC-CCccCHhH-cCC---------------------CCEEECcCCCCcccc---cccCCCCEEEccCCCCC
Confidence 78888888853 45565543 244 455555556666666 33566666666666554
Q ss_pred ccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCC
Q 002220 759 KRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPT 838 (951)
Q Consensus 759 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 838 (951)
. +|. +.+ +|++|++++|.... +|. .+++|+.|++++|.++.+|. .+++|+.|++++|.+.. +|.
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-----lp~ 177 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-----LPE 177 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-----CCC
T ss_pred C-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-----cch
Confidence 4 444 443 66677776665433 444 46677777777777776665 45677777777776554 344
Q ss_pred cCCCCCCCCEEeccCCCCCCcCccCCCCCCC-------CEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 839 RISKLSSLERLQLSGCEIKEIPEDIDCLSSL-------EVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 839 ~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L-------~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
+. ++|+.|+|++|.++.+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|+....+|
T Consensus 178 -l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred -hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 33 677777777777777666 433 55 77777777777777666667777777777776655444
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=8.7e-16 Score=160.11 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=137.7
Q ss_pred cceeeccccCCCCCccCc-ccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEc
Q 002220 722 GKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDL 800 (951)
Q Consensus 722 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 800 (951)
.+++.|++++|.+..++. .+..+++|++|+|++|.+....+..+.++++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 467888888899988765 5889999999999999998888888999999999999999977766778899999999999
Q ss_pred ccCCCcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCC
Q 002220 801 ERTGVKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSK 878 (951)
Q Consensus 801 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~ 878 (951)
++|.++.++.. +..+++|+.|++++|.... ..+..+..+++|+.|+|++|.+..++. .+..+++|+.|+|++|.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQS----IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCc----cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 99999988775 6889999999999998876 244568899999999999999998765 67889999999999998
Q ss_pred Ccc
Q 002220 879 IEI 881 (951)
Q Consensus 879 l~~ 881 (951)
+..
T Consensus 191 ~~c 193 (251)
T 3m19_A 191 FDC 193 (251)
T ss_dssp BCT
T ss_pred eeC
Confidence 863
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=9.5e-16 Score=163.31 Aligned_cols=168 Identities=26% Similarity=0.333 Sum_probs=132.6
Q ss_pred cceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcc
Q 002220 722 GKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLE 801 (951)
Q Consensus 722 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 801 (951)
.+|+.|++++|.+..++. +..+++|+.|++++|.+....+ +.++++|+.|++++|... .++. +..+++|+.|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hccCCCCCEEECC
Confidence 356666677777777754 7788888888888887765444 888888888888888743 3443 7888889999999
Q ss_pred cCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcc
Q 002220 802 RTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEI 881 (951)
Q Consensus 802 ~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~ 881 (951)
+|.+..+ ..+..+++|+.|++++|.... + ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.
T Consensus 121 ~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 121 HNGISDI-NGLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TSCCCCC-GGGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred CCcCCCC-hhhcCCCCCCEEEccCCcCCc-----c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 8888877 457788889999998887765 2 347788889999999998888766 8888899999999998888
Q ss_pred cchhhcCCCCCCEEeeCCCCCC
Q 002220 882 LPTSIGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 882 l~~~l~~l~~L~~L~L~~~~~l 903 (951)
++ .+..+++|+.|++++|+..
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEE
T ss_pred Ch-hhccCCCCCEEECcCCccc
Confidence 87 4888889999999887543
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1e-15 Score=176.66 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=89.4
Q ss_pred CCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcc
Q 002220 732 TPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPS 811 (951)
Q Consensus 732 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~ 811 (951)
|.++.+|. +.. +|+.|+|++|.+.. +|. .+++|+.|++++|.... +|. .+++|+.|++++|.++.+|.
T Consensus 110 N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 110 NRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp SCCSCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-
Confidence 44444444 332 56666666555444 333 45666666666665433 444 45677777777777777766
Q ss_pred ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCC-------CEEeccCCCCCCcCccCCCCCCCCEEEccCCCCc-ccc
Q 002220 812 FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSL-------ERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIE-ILP 883 (951)
Q Consensus 812 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-------~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~-~l~ 883 (951)
+. ++|+.|+|++|.+.. +|. +.. +| +.|+|++|.++.+|..+..+++|+.|+|++|.++ .+|
T Consensus 178 l~--~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC--TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh--CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 777777777776664 343 332 55 9999999999999998888999999999999987 556
Q ss_pred hhhcCC
Q 002220 884 TSIGQL 889 (951)
Q Consensus 884 ~~l~~l 889 (951)
..+..+
T Consensus 248 ~~l~~l 253 (571)
T 3cvr_A 248 ESLSQQ 253 (571)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665554
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.5e-15 Score=161.83 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=153.6
Q ss_pred eeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccC
Q 002220 724 VVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERT 803 (951)
Q Consensus 724 L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 803 (951)
+..+.+..+.+..+.. +..+++|+.|++++|.+... + .+..+++|++|++++|.... ++. +..+++|+.|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCC
Confidence 4455666666665533 56789999999999976544 3 48899999999999998654 444 899999999999999
Q ss_pred CCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc
Q 002220 804 GVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 804 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~ 883 (951)
.++.++. +..+++|+.|++++|.... + ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++
T Consensus 101 ~l~~~~~-l~~l~~L~~L~L~~n~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 101 KVKDLSS-LKDLKKLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CCCCGGG-GTTCTTCCEEECTTSCCCC-----C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred cCCCChh-hccCCCCCEEECCCCcCCC-----C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch
Confidence 9998765 8999999999999998776 3 3478899999999999999998 57888999999999999999888
Q ss_pred hhhcCCCCCCEEeeCCCCCCCcCCCc--cccccEeeeccCc
Q 002220 884 TSIGQLSRLRQLNLLDCNMLQSIPEL--PRGLLRLNAQNCR 922 (951)
Q Consensus 884 ~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~i~~C~ 922 (951)
. +..+++|+.|++++|. ++.+|.+ .++|+.|++.+|+
T Consensus 173 ~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred h-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 6 9999999999999974 5566653 3789999999875
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=2.9e-15 Score=175.06 Aligned_cols=168 Identities=26% Similarity=0.326 Sum_probs=127.9
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
+|+.|++++|.+..+| .+..+++|+.|+|++|.+....+ +..+++|+.|+|++|... .++ .+..+++|+.|+|++
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecC
Confidence 4556666667777776 47788888888888887665444 778888888888888643 344 577888888888888
Q ss_pred CCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCccc
Q 002220 803 TGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEIL 882 (951)
Q Consensus 803 n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 882 (951)
|.+..++ .+..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.|+.+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITD-----I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCC-----C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCC-----c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 8888764 57788888888888887765 2 347778888888888888887665 77888888888888888877
Q ss_pred chhhcCCCCCCEEeeCCCCCCC
Q 002220 883 PTSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 883 ~~~l~~l~~L~~L~L~~~~~l~ 904 (951)
| .+..+++|+.|+|++|+...
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEEC
T ss_pred h-HHccCCCCCEEEccCCcCcC
Confidence 5 57888888888888876543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=9.8e-16 Score=153.12 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=119.4
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc-cCccccCCCCCc
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE-LPPSFENLQGLR 819 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~l~~L~ 819 (951)
...+++|+.|++++|.+. .++ .+..+++|++|++++|. ...++ .+..+++|++|++++|.++. .+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 466778888888887665 445 57788888888888884 33343 57788888888888888875 567788888899
Q ss_pred EEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCC-CCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeC
Q 002220 820 QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCE-IKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLL 898 (951)
Q Consensus 820 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~ 898 (951)
.|++++|.... ..+..+..+++|+.|++++|. +..+| .+..+++|++|++++|.++.++ .+..+++|+.|+++
T Consensus 116 ~L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSAHDD----SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSBCBG----GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred EEEecCCccCc----HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence 99988887765 255667888889999999887 77776 6778888999999999888877 78888899999998
Q ss_pred CCCC
Q 002220 899 DCNM 902 (951)
Q Consensus 899 ~~~~ 902 (951)
+|+.
T Consensus 190 ~N~i 193 (197)
T 4ezg_A 190 SQTI 193 (197)
T ss_dssp BC--
T ss_pred Cccc
Confidence 8763
No 115
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=1.3e-14 Score=159.62 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=170.2
Q ss_pred cccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchh-cCCCChH
Q 002220 179 VTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES-ENGGGLV 257 (951)
Q Consensus 179 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ 257 (951)
+.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+....... .......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHH
Confidence 345556678999999999999998642 6999999999999999999998652 55554221110 0011233
Q ss_pred HHHHHHHHHHhcC--------------ccccC-CCCChH----HHHHHhcC-CcEEEEEeCCCChH--------H-HHHH
Q 002220 258 YLRDRVVSEIFQE--------------DIKIG-TPYLPD----YIVERLNR-MKVLTVLDDVNKVR--------Q-LHYL 308 (951)
Q Consensus 258 ~l~~~il~~l~~~--------------~~~~~-~~~~~~----~l~~~l~~-~~~LlVlDdv~~~~--------~-~~~l 308 (951)
.+...+...+... ..... ...... .+.+.... ++++||+||++... + +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 3344443332210 00000 011122 23333322 48999999996533 2 2333
Q ss_pred HhccCCCCCCCEEEEEeCCchhhhhc----C----C--CccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 002220 309 ACVLDQFGPGSRIIITTRDKRILDDF----G----V--CDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVL 378 (951)
Q Consensus 309 ~~~~~~~~~gs~IlvTtR~~~v~~~~----~----~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~ 378 (951)
...... .++.++|+|++...+.... . . .....+++.+|+.+|+.+++............ .+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Confidence 222211 2578899998876432211 0 1 11147999999999999999875421111111 24678899
Q ss_pred HHcCCCchHHHHHhhhcCC-CCHHHHH-HHHHHHhcCCCcchHHHHHHhhcCC---chhhHhhhhheecccCCCCHHHHH
Q 002220 379 KYANGNPLALRVLGSFFHR-KSKSDWE-KALENLNRISDPDIYDVLKISYNDL---RPEEKSMFLDIACFFAGEKKDFLT 453 (951)
Q Consensus 379 ~~~~g~PLal~~~~~~L~~-~~~~~w~-~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~ 453 (951)
+.++|+|+++..++..+.. .+...+. ...+. +...+.-.+..+ ++..+.++..+|+ .......+.
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------AKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH--------HHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 9999999999998865422 2222221 11111 111111112222 7888899988887 233445554
Q ss_pred HHhc-CC-CC----cccchHHHHhccCceeeCCeEE-ccHHHHHHHH
Q 002220 454 CILD-DP-NF----PHCGLNVLIEKSLITMSGYDIR-MHDLLQEMGR 493 (951)
Q Consensus 454 ~~~~-~~-~~----~~~~l~~L~~~sLi~~~~~~~~-mH~lv~~~~~ 493 (951)
..+. .. +. ....++.|.+.+||...++.|. .|++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 4431 11 22 3456899999999988766665 5788887653
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.6e-15 Score=151.61 Aligned_cols=172 Identities=21% Similarity=0.218 Sum_probs=114.6
Q ss_pred eccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCC
Q 002220 726 KLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGV 805 (951)
Q Consensus 726 ~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 805 (951)
.++.+++.+..+|..+ .++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4555667777777654 35788888888877655555567777777777777765544445567777777777777777
Q ss_pred cccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEccCCCCcccc
Q 002220 806 KELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 806 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~ 883 (951)
+.++.. +..+++|++|++++|..... .+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSL----PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CccCHhHhcCccCCCEEEcCCCcCccc----CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 766553 56777777777777766542 334466677777777777777766544 566777777777777543
Q ss_pred hhhcCCCCCCEEeeCCCCCCCcCCCc
Q 002220 884 TSIGQLSRLRQLNLLDCNMLQSIPEL 909 (951)
Q Consensus 884 ~~l~~l~~L~~L~L~~~~~l~~lp~~ 909 (951)
..+++|+.|+++.|.....+|..
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---cCCCCHHHHHHHHHhCCceeecc
Confidence 34456677777766666666643
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=2.3e-15 Score=165.99 Aligned_cols=173 Identities=26% Similarity=0.272 Sum_probs=131.8
Q ss_pred eeccccCCCCCccCcccccCCCCcEEeccccccccccccccc-CCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccC
Q 002220 725 VKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSIC-KLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERT 803 (951)
Q Consensus 725 ~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 803 (951)
+.++++++.+..+|..+. +.++.|+|++|.+....+..+. ++++|++|+|++|......+..|..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 356666777777776553 4578888888877666666666 7888888888888766555667888888888888888
Q ss_pred CCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccC----CCCCCCCEEEccCCC
Q 002220 804 GVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI----DCLSSLEVLDLSGSK 878 (951)
Q Consensus 804 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l----~~l~~L~~L~L~~n~ 878 (951)
.++.++. .|..+++|+.|+|++|.+.. ..|..+.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVV----VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccE----ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 8887765 57788888888888888776 35667888888888888888888887654 568888888888888
Q ss_pred Ccccc-hhhcCCCC--CCEEeeCCCCCC
Q 002220 879 IEILP-TSIGQLSR--LRQLNLLDCNML 903 (951)
Q Consensus 879 l~~l~-~~l~~l~~--L~~L~L~~~~~l 903 (951)
|+.+| ..+..+++ |+.|+|++|+..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88887 56677776 478888887653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=8.5e-18 Score=195.32 Aligned_cols=214 Identities=17% Similarity=0.194 Sum_probs=129.2
Q ss_pred ccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEe-
Q 002220 606 DLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLS- 684 (951)
Q Consensus 606 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~- 684 (951)
..++|+.|+|++|.++.+|..++.+++|+.|++++|.....++.. +..+......|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHHHhcccCcc
Confidence 467889999999999999999999999999999766422111110 011122334555666666666665
Q ss_pred ccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccccccccccc
Q 002220 685 LKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTS 764 (951)
Q Consensus 685 L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~ 764 (951)
++.+. + .+|..+.+.+|.+..+|.
T Consensus 417 l~~n~-~------------------------------~~L~~l~l~~n~i~~l~~------------------------- 440 (567)
T 1dce_A 417 MRAAY-L------------------------------DDLRSKFLLENSVLKMEY------------------------- 440 (567)
T ss_dssp GGHHH-H------------------------------HHHHHHHHHHHHHHHHHH-------------------------
T ss_pred hhhcc-c------------------------------chhhhhhhhcccccccCc-------------------------
Confidence 33210 0 112222222232222221
Q ss_pred ccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLS 844 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 844 (951)
..|+.|++++|.. +.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++|.+.. +| .+.+++
T Consensus 441 ----~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~l~~l~ 508 (567)
T 1dce_A 441 ----ADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-----VD-GVANLP 508 (567)
T ss_dssp ----TTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-----CG-GGTTCS
T ss_pred ----cCceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-----Cc-ccCCCC
Confidence 1255555555543 23454 666666666666666666666666677777777777666554 44 466677
Q ss_pred CCCEEeccCCCCCCc--CccCCCCCCCCEEEccCCCCcccchh----hcCCCCCCEEee
Q 002220 845 SLERLQLSGCEIKEI--PEDIDCLSSLEVLDLSGSKIEILPTS----IGQLSRLRQLNL 897 (951)
Q Consensus 845 ~L~~L~L~~~~l~~l--~~~l~~l~~L~~L~L~~n~l~~l~~~----l~~l~~L~~L~L 897 (951)
+|+.|+|++|.++.+ |..+..+++|+.|+|++|.++.+|+. +..+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777777777765 66777777777777777777766532 233677777653
No 119
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=1.8e-14 Score=159.16 Aligned_cols=294 Identities=15% Similarity=0.078 Sum_probs=169.6
Q ss_pred cccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 179 VTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 179 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
+.++..++.|+||+++++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+...............
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHH
Confidence 3445566789999999999999 743 599999999999999999999876532 3555322110000112223
Q ss_pred HHHHHHHHHhc-------------Cc-----c----ccC----CCCChHHHHHHhcC---CcEEEEEeCCCChH-----H
Q 002220 259 LRDRVVSEIFQ-------------ED-----I----KIG----TPYLPDYIVERLNR---MKVLTVLDDVNKVR-----Q 304 (951)
Q Consensus 259 l~~~il~~l~~-------------~~-----~----~~~----~~~~~~~l~~~l~~---~~~LlVlDdv~~~~-----~ 304 (951)
....+...+.. .. . ... .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 33333222210 00 0 000 01122444444432 48999999996532 2
Q ss_pred HHHHHhccCCCCCCCEEEEEeCCchhhhhc--------CC--CccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHH
Q 002220 305 LHYLACVLDQFGPGSRIIITTRDKRILDDF--------GV--CDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALL 374 (951)
Q Consensus 305 ~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~--------~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~ 374 (951)
+..+...+....++.++|+|+|........ .. .....+++.+|+.+|+.+++...........+. .
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~ 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----Y 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----H
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----H
Confidence 222222211112467899999976532211 01 111579999999999999998754211111222 1
Q ss_pred HHHHHHcCCCchHHHHHhhhcCC-CCHHHHHHH-HHHHhcCCCcchHHHHH-Hhhc--CCchhhHhhhhheecccCCCCH
Q 002220 375 ERVLKYANGNPLALRVLGSFFHR-KSKSDWEKA-LENLNRISDPDIYDVLK-ISYN--DLRPEEKSMFLDIACFFAGEKK 449 (951)
Q Consensus 375 ~~i~~~~~g~PLal~~~~~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~f~~~~~~ 449 (951)
..|++.++|+|+++..++..+.. .+...|... .+... ..+...+. ..++ .+++..+..+..+|+ . . ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 78999999999999999876532 233333211 11110 01111122 1111 688899999999998 2 2 55
Q ss_pred HHHHHH----hcC-CCC--cccchHHHHhccCceeeCCeEE-ccHHHHHHH
Q 002220 450 DFLTCI----LDD-PNF--PHCGLNVLIEKSLITMSGYDIR-MHDLLQEMG 492 (951)
Q Consensus 450 ~~l~~~----~~~-~~~--~~~~l~~L~~~sLi~~~~~~~~-mH~lv~~~~ 492 (951)
..+... ... ... ....++.|.+.+||...++.|. .|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 555432 221 111 4556899999999988766665 689988764
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=3.3e-15 Score=156.40 Aligned_cols=168 Identities=21% Similarity=0.256 Sum_probs=141.5
Q ss_pred cceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcc
Q 002220 722 GKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLE 801 (951)
Q Consensus 722 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 801 (951)
.++..+++.++.++.++ .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.... ++. +..+++|+.|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 35677888889999888 6889999999999998765 445 68899999999999997544 444 8899999999999
Q ss_pred cCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcc
Q 002220 802 RTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEI 881 (951)
Q Consensus 802 ~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~ 881 (951)
+|.++.++.... ++|+.|++++|.... ++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~-----~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRD-----TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSB-----SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCccCCcCcccc--CcccEEEccCCccCC-----Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 999998876433 899999999998776 33 4888999999999999999886 68889999999999999998
Q ss_pred cchhhcCCCCCCEEeeCCCCCCC
Q 002220 882 LPTSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 882 l~~~l~~l~~L~~L~L~~~~~l~ 904 (951)
+ ..+..+++|+.|++++|+...
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred h-HHhccCCCCCEEeCCCCcccC
Confidence 8 578899999999999976543
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.1e-14 Score=148.04 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=111.7
Q ss_pred eeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCC
Q 002220 725 VKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTG 804 (951)
Q Consensus 725 ~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 804 (951)
+.++.+++.++.+|..+. ++|+.|++++|.+....+..+.++++|+.|++++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 356677788888887664 688888888888776666678888888888888887666667778888888888888888
Q ss_pred CcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCc
Q 002220 805 VKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 805 i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~ 880 (951)
++.+|.. |..+++|+.|+|++|.+.. ..|..+.++++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINC----LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCE----eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8877664 5677777777777777665 245567777777777777777777654 3666777777777777664
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=6.1e-15 Score=172.29 Aligned_cols=186 Identities=21% Similarity=0.252 Sum_probs=156.4
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
.+..+.+..+.+..++. +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|..... +. +..+++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence 45566677777776654 6789999999999987644 44 589999999999999986554 43 89999999999999
Q ss_pred CCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCccc
Q 002220 803 TGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEIL 882 (951)
Q Consensus 803 n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 882 (951)
|.+..++ .+..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.++.+
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISD-----IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCC-----CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCC-----Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc
Confidence 9999876 68999999999999998776 33 478899999999999999998 5788999999999999999988
Q ss_pred chhhcCCCCCCEEeeCCCCCCCcCCCc--cccccEeeeccCcc
Q 002220 883 PTSIGQLSRLRQLNLLDCNMLQSIPEL--PRGLLRLNAQNCRR 923 (951)
Q Consensus 883 ~~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~i~~C~~ 923 (951)
+. +..+++|+.|+|++|+ +..+|.+ .++|+.|++.+|+-
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEEE
T ss_pred hh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCcC
Confidence 76 9999999999999975 4555643 37899999998763
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.2e-15 Score=148.48 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=127.5
Q ss_pred ccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEc
Q 002220 721 SGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDL 800 (951)
Q Consensus 721 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 800 (951)
+.+|+.|++++|.+..+| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|......+..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 346778888889999888 699999999999999944 333 46889999999999999877767888999999999999
Q ss_pred ccCCCcc-cCccccCCCCCcEEeeccCC-CCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCC
Q 002220 801 ERTGVKE-LPPSFENLQGLRQLSLIGCS-ELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSK 878 (951)
Q Consensus 801 ~~n~i~~-l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~ 878 (951)
++|.++. .+..+..+++|+.|++++|. ... +| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 9999985 56778999999999999998 443 44 5889999999999999999987 78889999999999998
Q ss_pred Cc
Q 002220 879 IE 880 (951)
Q Consensus 879 l~ 880 (951)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 75
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=6.2e-17 Score=188.07 Aligned_cols=187 Identities=18% Similarity=0.162 Sum_probs=148.8
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEeccccc-------------ccccccccccCCCCCCEEe-ccCCCCCCccch-
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCE-------------RLKRVSTSICKLKSLGSLL-LAFCSNLEGFPE- 787 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~~- 787 (951)
+|+.|+|++|.++.+|..++.+++|+.|++++|. ..+..|..++++++|+.|+ ++.|. ...++.
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhhh
Confidence 5667888889999999999999999999997764 3455667788888888888 44432 111111
Q ss_pred -----hccc--CCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC
Q 002220 788 -----ILEK--MELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP 860 (951)
Q Consensus 788 -----~l~~--l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~ 860 (951)
.+.. ...|+.|++++|.++.+|. +..+++|+.|+|++|.+.. +|..+.++++|+.|+|++|.++.+|
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCCc
Confidence 1111 2369999999999999987 9999999999999998875 7888999999999999999999998
Q ss_pred ccCCCCCCCCEEEccCCCCccc--chhhcCCCCCCEEeeCCCCCCCcCCCc------cccccEee
Q 002220 861 EDIDCLSSLEVLDLSGSKIEIL--PTSIGQLSRLRQLNLLDCNMLQSIPEL------PRGLLRLN 917 (951)
Q Consensus 861 ~~l~~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~L~L~~~~~l~~lp~~------~~~L~~L~ 917 (951)
.+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+.....|.. .|+|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 899999999999999999988 889999999999999997654433322 25566553
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=2.6e-14 Score=146.28 Aligned_cols=152 Identities=22% Similarity=0.232 Sum_probs=82.3
Q ss_pred eeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccC
Q 002220 724 VVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERT 803 (951)
Q Consensus 724 L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 803 (951)
.+.++.+++.+..+|..+. ++|+.|+|++|.+....+..+.++++|++|++++|......+..+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3456666677777776543 66666666666655555555555555555555555433222233444455555555555
Q ss_pred CCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc
Q 002220 804 GVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 804 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~ 883 (951)
.++.++. ..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+++.+|
T Consensus 99 ~l~~l~~---------------------------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 99 QLTVLPS---------------------------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CCCCCCT---------------------------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred cCCccCh---------------------------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence 4444432 3344555555555555555555555555555555555555555555
Q ss_pred -hhhcCCCCCCEEeeCCCCCCC
Q 002220 884 -TSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 884 -~~l~~l~~L~~L~L~~~~~l~ 904 (951)
..+..+++|+.|+|++|+...
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCT
T ss_pred HHHHhCCCCCCEEEeeCCCccC
Confidence 334555555555555555443
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=144.75 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=97.1
Q ss_pred eeccccCCCCCccCcccccCCCCcEEeccccccccccc-ccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccC
Q 002220 725 VKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVS-TSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERT 803 (951)
Q Consensus 725 ~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 803 (951)
+.++++++.++.+|..+. ..++.|+|++|.+....+ ..+.++++|++|++++|......+..|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 367777788888887553 356788888777655533 34667777777777777655444556667777777777777
Q ss_pred CCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCc
Q 002220 804 GVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 804 ~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~ 880 (951)
.++.++. .|..+++|++|+|++|.+.. ..|..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITC----VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCe----ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7766654 35666666666666666655 2455566666666666666666664 455666666666666666554
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=2e-14 Score=145.01 Aligned_cols=161 Identities=21% Similarity=0.209 Sum_probs=135.7
Q ss_pred ccceeeccccCCCCCccCcc-cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEE
Q 002220 721 SGKVVKLRLWYTPIEEVPSS-IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLD 799 (951)
Q Consensus 721 ~~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 799 (951)
..+++.|++++|.+..++.. +..+++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34788888888999988765 68899999999999988766666788999999999999987665666689999999999
Q ss_pred cccCCCcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCC
Q 002220 800 LERTGVKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSK 878 (951)
Q Consensus 800 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~ 878 (951)
+++|.++.++.. +..+++|+.|++++|.... ..+..+..+++|+.|++++|.+. ..+++|+.|+++.|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS----VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINK 176 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccce----eCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHh
Confidence 999999988764 7899999999999998776 24455888999999999999654 356789999999998
Q ss_pred Cc-ccchhhcCCCC
Q 002220 879 IE-ILPTSIGQLSR 891 (951)
Q Consensus 879 l~-~l~~~l~~l~~ 891 (951)
++ .+|..++.++.
T Consensus 177 ~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 177 HSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTBBCTTSSBCT
T ss_pred CCceeeccCccccC
Confidence 88 78877777665
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=6e-14 Score=143.61 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=115.6
Q ss_pred CCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEE
Q 002220 771 LGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERL 849 (951)
Q Consensus 771 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 849 (951)
.+.++.+++. +..+|..+ .++|+.|++++|.+..+ |..+..+++|+.|+|++|.+.. ..+..+.++++|+.|
T Consensus 21 ~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~----i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA----LPVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEE
T ss_pred CCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC----cChhhcccCCCcCEE
Confidence 3445555543 34455433 37888888888888876 5568888999999999988765 234557899999999
Q ss_pred eccCCCCCCcCcc-CCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCC----ccccccEeeeccCccc
Q 002220 850 QLSGCEIKEIPED-IDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE----LPRGLLRLNAQNCRRL 924 (951)
Q Consensus 850 ~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~----~~~~L~~L~i~~C~~L 924 (951)
+|++|.++.++.. +..+++|++|+|++|+++.+|..+..+++|+.|+|++|+ ++.+|. -.++|+.|++.+++--
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999998755 688999999999999999999999999999999999975 455553 2378999999987643
Q ss_pred c
Q 002220 925 R 925 (951)
Q Consensus 925 ~ 925 (951)
.
T Consensus 173 c 173 (229)
T 3e6j_A 173 C 173 (229)
T ss_dssp T
T ss_pred C
Confidence 3
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.7e-13 Score=139.20 Aligned_cols=150 Identities=20% Similarity=0.283 Sum_probs=127.1
Q ss_pred cEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccC
Q 002220 748 ETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGC 826 (951)
Q Consensus 748 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~ 826 (951)
+.++++++.+ ..+|..+. ++|+.|++++|......+..+..+++|+.|++++|.+..+ |..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5677777654 45565544 7899999999987666666899999999999999999977 678999999999999999
Q ss_pred CCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCcccch-hhcCCCCCCEEeeCCCCCCC
Q 002220 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEILPT-SIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 827 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~~~~l~ 904 (951)
.+... .+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+...
T Consensus 91 ~l~~l----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITEL----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCcc----CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98862 445578999999999999999986 5678899999999999999998884 58889999999999987644
No 130
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.51 E-value=1.7e-13 Score=154.54 Aligned_cols=279 Identities=15% Similarity=0.080 Sum_probs=163.9
Q ss_pred CCCCcccchhhHHHHHHhh-cc--CC--CCcEEEEE--EecCCChhHHHHHHHHHHhhcc-----ccc-eeecccccchh
Q 002220 184 YSDGFVGLNSRIQKIKSLL-CI--GL--PDFRTIGI--WGMGGIGKTTLAGAVFKLISRE-----FEG-KCFMPNVREES 250 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~-~~~~~~~~~~~ 250 (951)
.+..|+||+.++++|.+.+ .. .. ...+.+.| +|++|+||||||+++++..... +.. ++|+.+..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN--- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence 4578999999999999988 42 11 23456666 9999999999999999876553 222 34543221
Q ss_pred cCCCChHHHHHHHHHHHhcCccccCC-CCC-hHHHHHHhc--CCcEEEEEeCCCCh--------HHHHHHHhccCCC---
Q 002220 251 ENGGGLVYLRDRVVSEIFQEDIKIGT-PYL-PDYIVERLN--RMKVLTVLDDVNKV--------RQLHYLACVLDQF--- 315 (951)
Q Consensus 251 ~~~~~~~~l~~~il~~l~~~~~~~~~-~~~-~~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~--- 315 (951)
......+...++.++......... ... ...+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 97 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 97 --APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp --CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred --CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 344566777777777443211111 011 144555554 67999999999653 2233333322211
Q ss_pred C--CCCEEEEEeCCchhhhhc---------CCCccceEEcCCCChhhhHHHHhhhh---ccCCCCChhHHHHHHHHHHHc
Q 002220 316 G--PGSRIIITTRDKRILDDF---------GVCDTDIYEVNKLRFHEALVLFSNFA---FKENQCPGDLLALLERVLKYA 381 (951)
Q Consensus 316 ~--~gs~IlvTtR~~~v~~~~---------~~~~~~~~~l~~L~~~~a~~Lf~~~~---~~~~~~~~~~~~~~~~i~~~~ 381 (951)
+ ....||+||+...+.... ... ..+.+++|+.++++++|...+ +...... .+.++.+++.+
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~--~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~ 249 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIG--FKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVY 249 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHH
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcC--CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHH
Confidence 2 344578888765532111 112 339999999999999997654 2221112 25677889999
Q ss_pred C------CCchHHHHHhhhc------CC---CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheecccC-
Q 002220 382 N------GNPLALRVLGSFF------HR---KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFFA- 445 (951)
Q Consensus 382 ~------g~PLal~~~~~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~- 445 (951)
+ |+|..+..++... .+ -+.+.+..++..... ...+.-.+..||+..+.++..+|.+..
T Consensus 250 ~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 250 GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLG 323 (412)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9 9997655444321 11 134444444433210 233455678899999999998887542
Q ss_pred ---CCCHHH-------HH-HHhcCCCC----cccchHHHHhccCceee
Q 002220 446 ---GEKKDF-------LT-CILDDPNF----PHCGLNVLIEKSLITMS 478 (951)
Q Consensus 446 ---~~~~~~-------l~-~~~~~~~~----~~~~l~~L~~~sLi~~~ 478 (951)
...... +. ........ ....++.|.+.+||...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 122222 11 22221111 23458999999999775
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=3.3e-14 Score=148.78 Aligned_cols=142 Identities=23% Similarity=0.245 Sum_probs=101.5
Q ss_pred cccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc
Q 002220 728 RLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE 807 (951)
Q Consensus 728 ~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 807 (951)
++++|.+..+| .+..+++|+.|++++|.+....+ +.++++|++|++++|.... ++. +.. ++|+.|++++|.++.
T Consensus 47 ~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 47 NGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp ECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB
T ss_pred ECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC
Confidence 33334455555 46677777777777776554433 7777778888887776433 443 223 788888888888887
Q ss_pred cCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc
Q 002220 808 LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 808 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~ 883 (951)
++ .+..+++|+.|++++|.... ++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+...|
T Consensus 121 ~~-~l~~l~~L~~L~Ls~N~i~~-----~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 121 TD-SLIHLKNLEILSIRNNKLKS-----IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SG-GGTTCTTCCEEECTTSCCCB-----CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred Ch-hhcCcccccEEECCCCcCCC-----Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 64 47788888888888887765 33 477788888888888888877 56778888888888888877665
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=152.56 Aligned_cols=163 Identities=23% Similarity=0.214 Sum_probs=132.2
Q ss_pred CCCCCc-cccceeeccccCCCCCccCcc-cc-cCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcc
Q 002220 714 LTEFPQ-ISGKVVKLRLWYTPIEEVPSS-IE-CLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILE 790 (951)
Q Consensus 714 l~~l~~-~~~~L~~L~l~~~~l~~lp~~-l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 790 (951)
++.+|. .+..++.|+|++|.++.++.. +. .+++|+.|+|++|.+....+..|.++++|++|+|++|......+..|.
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 444553 334577888899999988765 55 899999999999988887778899999999999999987665667789
Q ss_pred cCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcC---CCCCCCCEEeccCCCCCCcCc-cCCC
Q 002220 791 KMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRI---SKLSSLERLQLSGCEIKEIPE-DIDC 865 (951)
Q Consensus 791 ~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~L~~L~L~~~~l~~l~~-~l~~ 865 (951)
.+++|+.|++++|.+..+ +..|..+++|+.|+|++|.+.... +..+ ..+++|+.|+|++|.++.+|. .+..
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 185 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP----VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC----GGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC----HHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence 999999999999999977 557899999999999999888732 2223 578999999999999998873 4566
Q ss_pred CCC--CCEEEccCCCCc
Q 002220 866 LSS--LEVLDLSGSKIE 880 (951)
Q Consensus 866 l~~--L~~L~L~~n~l~ 880 (951)
++. |+.|+|++|.+.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 666 488999999775
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=3.9e-13 Score=136.49 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=117.9
Q ss_pred cceeeccccCCCCCccCc--ccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEE
Q 002220 722 GKVVKLRLWYTPIEEVPS--SIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLD 799 (951)
Q Consensus 722 ~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 799 (951)
..++.|++++|.+..++. .+..+++|+.|+|++|.+....+..+.++++|++|++++|......+..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 356788889999998843 488999999999999998887777899999999999999998777778899999999999
Q ss_pred cccCCCccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC
Q 002220 800 LERTGVKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE 858 (951)
Q Consensus 800 l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 858 (951)
+++|.++.+ |..+..+++|+.|+|++|.+.. ..|..+..+++|+.|+|++|++..
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITT----VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC----BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCE----ECHHHhcCCCCCCEEEecCcCCcC
Confidence 999999987 5678999999999999999887 357889999999999999998763
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.3e-13 Score=133.78 Aligned_cols=106 Identities=28% Similarity=0.347 Sum_probs=45.3
Q ss_pred ccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC--ccCCCCC
Q 002220 790 EKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP--EDIDCLS 867 (951)
Q Consensus 790 ~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~~l~~l~ 867 (951)
..+++|+.|++++|.++.+ ..+..+++|+.|++++|.... .+|..+..+++|+.|++++|.++.+| ..+..++
T Consensus 46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 3333444444444443333 333444444444444444333 12232333444444444444444433 3344444
Q ss_pred CCCEEEccCCCCcccch----hhcCCCCCCEEeeCCC
Q 002220 868 SLEVLDLSGSKIEILPT----SIGQLSRLRQLNLLDC 900 (951)
Q Consensus 868 ~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~L~~~ 900 (951)
+|++|++++|.++.+|. .+..+++|+.|++++|
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 44444444444444443 3444445555544443
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.1e-13 Score=132.32 Aligned_cols=136 Identities=23% Similarity=0.268 Sum_probs=87.7
Q ss_pred CCCcEEeccccccc-ccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc-cCccccCCCCCcEEe
Q 002220 745 TNLETLDLRLCERL-KRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE-LPPSFENLQGLRQLS 822 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~ 822 (951)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.+.. +|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666554 3455555666666666666665333 2 456666677777777777765 555555577777777
Q ss_pred eccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc----cCCCCCCCCEEEccCCCCcccchh
Q 002220 823 LIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE----DIDCLSSLEVLDLSGSKIEILPTS 885 (951)
Q Consensus 823 l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~----~l~~l~~L~~L~L~~n~l~~l~~~ 885 (951)
+++|..... ..+..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+..+|.+
T Consensus 102 Ls~N~l~~~---~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDI---STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSS---GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcc---hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 777765542 112456677777777777777777665 567777888888888877777643
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=3.7e-14 Score=170.21 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=102.9
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccc----cccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEE
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLC----ERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETL 798 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 798 (951)
.++.|.|.+|.+...+..+.....|..+.|... +.....+..+..+++|+.|+|++|... .+|..+..+++|++|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEE
Confidence 345566666666665554444333443333221 122245666778888888888888754 666667788888888
Q ss_pred EcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCC
Q 002220 799 DLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSK 878 (951)
Q Consensus 799 ~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~ 878 (951)
+|++|.++.+|..+..+++|+.|+|++|.+.. +|..+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 88888888888888888888888888888764 6777888888888888888888888888888888888888888
Q ss_pred Ccc-cchhhcCCCC-CCEEeeCCCCCCCcCCCccccccEeeeccC
Q 002220 879 IEI-LPTSIGQLSR-LRQLNLLDCNMLQSIPELPRGLLRLNAQNC 921 (951)
Q Consensus 879 l~~-l~~~l~~l~~-L~~L~L~~~~~l~~lp~~~~~L~~L~i~~C 921 (951)
++. +|..+..+.. +..|+|++|.....+ |..|+.|++.++
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~---p~~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPL---PHERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCC---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcC---ccccceeEeecc
Confidence 874 4444433221 223567666554433 456666666655
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2.1e-13 Score=129.25 Aligned_cols=125 Identities=24% Similarity=0.306 Sum_probs=84.5
Q ss_pred CCCCEEeccCCCCC-CccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCC
Q 002220 769 KSLGSLLLAFCSNL-EGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLE 847 (951)
Q Consensus 769 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 847 (951)
++|+.|++++|... ..+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.... .+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG----GLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS----CTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc----hHHHHhhhCCCCC
Confidence 45666666666543 34555566666677777777666665 556667777777777776655 2445555677777
Q ss_pred EEeccCCCCCCcC--ccCCCCCCCCEEEccCCCCcccch----hhcCCCCCCEEeeC
Q 002220 848 RLQLSGCEIKEIP--EDIDCLSSLEVLDLSGSKIEILPT----SIGQLSRLRQLNLL 898 (951)
Q Consensus 848 ~L~L~~~~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~L~ 898 (951)
.|++++|.++.++ ..+..+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777777754 667777788888888887776664 56777888877765
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.8e-11 Score=136.35 Aligned_cols=276 Identities=12% Similarity=0.050 Sum_probs=167.7
Q ss_pred CCCcccchhhHHHHHHhhcc--CCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--------ccceeecccccchhcCCC
Q 002220 185 SDGFVGLNSRIQKIKSLLCI--GLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--------FEGKCFMPNVREESENGG 254 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 254 (951)
++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+.+++..... ....+|+.+.. ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE-----VG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH-----HC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc-----CC
Confidence 37899999999999988753 23445789999999999999999999876443 12234443211 12
Q ss_pred -ChHHHHHHHHHHHhcCccccCCCCC---hHHHHHHhcCCcEEEEEeCCCChHH---HHH-HHhccCCCCCCCEEEEEeC
Q 002220 255 -GLVYLRDRVVSEIFQEDIKIGTPYL---PDYIVERLNRMKVLTVLDDVNKVRQ---LHY-LACVLDQFGPGSRIIITTR 326 (951)
Q Consensus 255 -~~~~l~~~il~~l~~~~~~~~~~~~---~~~l~~~l~~~~~LlVlDdv~~~~~---~~~-l~~~~~~~~~gs~IlvTtR 326 (951)
....+...++.++.+.......... .+.+.+.+..++.+|||||++.... .+. +...+... .+..||+||+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 4455666777776443222211111 1555666766666999999975432 122 22222222 6788999998
Q ss_pred Cchhhh----hc--CCCccceEEcCCCChhhhHHHHhhhhc---cCCCCChhHHHHHHHHHHHcC---CCch-HHHHHhh
Q 002220 327 DKRILD----DF--GVCDTDIYEVNKLRFHEALVLFSNFAF---KENQCPGDLLALLERVLKYAN---GNPL-ALRVLGS 393 (951)
Q Consensus 327 ~~~v~~----~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~ 393 (951)
...... .. ... ..+.+++++.++..+++...+. ......+ +..+.+++.++ |.|. |+..+-.
T Consensus 173 ~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp STTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 763211 11 122 4899999999999999998753 2222222 34566777777 8876 4333322
Q ss_pred hc------CCCCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheecccC-CCCHHHHHHHhcCCC---C--
Q 002220 394 FF------HRKSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFFA-GEKKDFLTCILDDPN---F-- 461 (951)
Q Consensus 394 ~L------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~~~~l~~~~~~~~---~-- 461 (951)
.. ..-+.+.+..++.+.. ...+..+++.|+++++..+..++.... +........+....| .
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCH
Confidence 21 1236777777776653 245667788999988888777766111 111112222222222 1
Q ss_pred --cccchHHHHhccCceee
Q 002220 462 --PHCGLNVLIEKSLITMS 478 (951)
Q Consensus 462 --~~~~l~~L~~~sLi~~~ 478 (951)
....++.|.++++++..
T Consensus 321 ~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 23457889999999864
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.4e-13 Score=165.13 Aligned_cols=189 Identities=17% Similarity=0.172 Sum_probs=115.8
Q ss_pred CCCcEEecccccccccccccccCCCCCCEEeccCC----CCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcE
Q 002220 745 TNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFC----SNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQ 820 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~----~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~ 820 (951)
+.++.|+|.+|.... .+..+.....|..+.+... ..+...+..+..+++|+.|+|++|.+..+|..+..+++|+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 567888887776544 3433333334444433321 12234577889999999999999999999998889999999
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCC
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~ 900 (951)
|+|++|.+.. +|..+.++++|+.|+|++|.++.+|..+..+++|++|+|++|.|+.+|..+..+++|+.|+|++|
T Consensus 252 L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 252 LYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred EEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 9999998874 78889999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCcCCCccc----cccEeeeccCcccccCCCcCcchhhhhcccc
Q 002220 901 NMLQSIPELPR----GLLRLNAQNCRRLRSLPELPSCLEDQDFRNM 942 (951)
Q Consensus 901 ~~l~~lp~~~~----~L~~L~i~~C~~L~~lp~~~~~L~~l~~~~~ 942 (951)
+....+|.... .+..|++.++..- ..+|..|+.|++.+|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~---~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPE---IPLPHERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCC---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCccc---CcCccccceeEeecc
Confidence 87777665331 1223455554322 345666777777665
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.4e-12 Score=127.33 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCC
Q 002220 767 KLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSL 846 (951)
Q Consensus 767 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 846 (951)
++.+|++|++++|... .++......++|+.|++++|.++.+ ..+..+++|+.|++++|..... .+..+..+++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI----GEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE----CSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc----CcchhhcCCCC
Confidence 3444555555554332 2333222233666666666666655 4556666666666666665541 22223566666
Q ss_pred CEEeccCCCCCCcCc--cCCCCCCCCEEEccCCCCcccchh----hcCCCCCCEEeeCCCC
Q 002220 847 ERLQLSGCEIKEIPE--DIDCLSSLEVLDLSGSKIEILPTS----IGQLSRLRQLNLLDCN 901 (951)
Q Consensus 847 ~~L~L~~~~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~~----l~~l~~L~~L~L~~~~ 901 (951)
+.|++++|.+..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666666665 566666677777777766666643 6666777777666654
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.5e-12 Score=123.38 Aligned_cols=125 Identities=22% Similarity=0.207 Sum_probs=59.6
Q ss_pred CCcEEeccccccc-ccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc-cCccccCCCCCcEEee
Q 002220 746 NLETLDLRLCERL-KRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE-LPPSFENLQGLRQLSL 823 (951)
Q Consensus 746 ~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l 823 (951)
+|+.|++++|.+. +.+|..+..+++|+.|++++|..... ..++.+++|++|++++|.++. +|..+..+++|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444433 23333344444444444444432222 334445555555555555544 3334444555555555
Q ss_pred ccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc----cCCCCCCCCEEEcc
Q 002220 824 IGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE----DIDCLSSLEVLDLS 875 (951)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~----~l~~l~~L~~L~L~ 875 (951)
++|..... ..+..+..+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 96 s~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55544331 112345555566666666666555543 35556666666654
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=6e-12 Score=136.72 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=91.0
Q ss_pred CCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCC
Q 002220 768 LKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSL 846 (951)
Q Consensus 768 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 846 (951)
..++..+.+.++-...........+++|+.|++.+|.++.++. .|.++++|+.|++.+| ... ..+.+|.++++|
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~----I~~~aF~~~~~L 275 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT----IGQRVFSNCGRL 275 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----ECTTTTTTCTTC
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----ehHHHhhCChhc
Confidence 4556666665542221222222347888999999888888876 5888889999999886 333 355678889999
Q ss_pred C-EEeccCCCCCCcC-ccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEee
Q 002220 847 E-RLQLSGCEIKEIP-EDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNL 897 (951)
Q Consensus 847 ~-~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L 897 (951)
+ .+++.+ .++.++ ..|.++++|+.|++++|+++.++ ..|.++++|+.|+.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8 999988 777764 56788899999999999999888 57888889988863
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=9e-12 Score=123.45 Aligned_cols=127 Identities=23% Similarity=0.237 Sum_probs=74.1
Q ss_pred CEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcc--ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEE
Q 002220 772 GSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPS--FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERL 849 (951)
Q Consensus 772 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 849 (951)
++++++++.. +.+|..+. .+|+.|++++|.++.++.. +..+++|++|++++|.+.. ..|..+.++++|+.|
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC----cCHhHcCCcccCCEE
Confidence 3444444432 33443322 2566666666666655542 5666666666666666554 245556666666666
Q ss_pred eccCCCCCCcCc-cCCCCCCCCEEEccCCCCccc-chhhcCCCCCCEEeeCCCCCCCc
Q 002220 850 QLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIEIL-PTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 850 ~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
+|++|.++.++. .+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+....
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666666666443 356666677777777766644 45566666777777766665443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=8.2e-12 Score=123.75 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=70.2
Q ss_pred eeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCC
Q 002220 725 VKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTG 804 (951)
Q Consensus 725 ~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 804 (951)
+.++++++.++.+|..+.. +|+.|++++|.+....+.. .++.+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~-----------------------~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDG-----------------------LFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSC-----------------------SGGGCTTCCEEECCSSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcc-----------------------ccccCCCCCEEECCCCC
Confidence 4566666777777765433 6666666666544333321 23444444444444444
Q ss_pred Cccc-CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-CccCCCCCCCCEEEccCCCCc
Q 002220 805 VKEL-PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 805 i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~ 880 (951)
++.+ |..|..+++|+.|+|++|.+.. ..+..+.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.+.
T Consensus 66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 66 LTGIEPNAFEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCHhHcCCcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 4443 3344555555555555555444 2334455666666666666666653 455666667777777777665
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.4e-11 Score=121.93 Aligned_cols=107 Identities=24% Similarity=0.338 Sum_probs=68.3
Q ss_pred CCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCE
Q 002220 793 ELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEV 871 (951)
Q Consensus 793 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~ 871 (951)
++|+.|++++|.++.+|..+..+++|+.|++++|.+.. ..+..|.++++|+.|+|++|.++.++. .+..+++|+.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 45666666666666666666666666666666666655 234456666667777777766666543 4566667777
Q ss_pred EEccCCCCcccch-hhcCCCCCCEEeeCCCCCC
Q 002220 872 LDLSGSKIEILPT-SIGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 872 L~L~~n~l~~l~~-~l~~l~~L~~L~L~~~~~l 903 (951)
|+|++|.++.+|. .+..+++|+.|+|++|+..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777777666663 3566677777777766543
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=3.2e-11 Score=134.47 Aligned_cols=280 Identities=15% Similarity=0.092 Sum_probs=160.3
Q ss_pred CCCCCcccchhhHHHHHHhhccC--CCCcEEEEEEecCCChhHHHHHHHHHHhhcccc---ceeecccccchhcCCCChH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIG--LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE---GKCFMPNVREESENGGGLV 257 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 257 (951)
..++.|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+.+.. .....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~-----~~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ-----IDTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH-----HCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC-----CCCHH
Confidence 34578999999999999988632 344678999999999999999999997765542 234443211 12233
Q ss_pred HHHHHHHHHHhcCccccCC-CCC-hHHHHHHhc--CCcEEEEEeCCCCh------HHHHHHHhccCC-CCCCCEEEEEeC
Q 002220 258 YLRDRVVSEIFQEDIKIGT-PYL-PDYIVERLN--RMKVLTVLDDVNKV------RQLHYLACVLDQ-FGPGSRIIITTR 326 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~-~~~-~~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~IlvTtR 326 (951)
.+...++..+......... ... .+.+.+.+. +++.+||||+++.. ..+..+...... ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 4444444443221111000 001 133444443 34899999998643 234444333211 134566788887
Q ss_pred Cchhhhhc------CCCccceEEcCCCChhhhHHHHhhhhc---cCCCCChhHHHHHHHHHHHcC---CCchHHHHHh-h
Q 002220 327 DKRILDDF------GVCDTDIYEVNKLRFHEALVLFSNFAF---KENQCPGDLLALLERVLKYAN---GNPLALRVLG-S 393 (951)
Q Consensus 327 ~~~v~~~~------~~~~~~~~~l~~L~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~PLal~~~~-~ 393 (951)
........ ... ...+.+++++.++..+++...+. ...... .++.+.+++.++ |.|..+..+. .
T Consensus 172 ~~~~~~~~~~~~~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~ 247 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLS-EEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRV 247 (386)
T ss_dssp CGGGGGGCTTHHHHTTT-TEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCC-CeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66432221 111 14799999999999999987642 112222 245566777776 9988443322 2
Q ss_pred hcC-----C---CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheecccC-CC---CHH-------HHHH
Q 002220 394 FFH-----R---KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFFA-GE---KKD-------FLTC 454 (951)
Q Consensus 394 ~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~---~~~-------~l~~ 454 (951)
... + -+.+.+..++.... ...+.-.+..++...+..+..++...+ +. ... .+..
T Consensus 248 a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 248 SGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 211 1 25566666655542 235666778899988888877775432 21 121 1222
Q ss_pred HhcCCCC----cccchHHHHhccCceee
Q 002220 455 ILDDPNF----PHCGLNVLIEKSLITMS 478 (951)
Q Consensus 455 ~~~~~~~----~~~~l~~L~~~sLi~~~ 478 (951)
....... ....++.|.+.++|+..
T Consensus 321 ~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2221211 23457888899998764
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=2.7e-12 Score=125.35 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=98.1
Q ss_pred cccCCCCcEEecccccccccccccccCCC-CCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccc-cCCCCC
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLK-SLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSF-ENLQGL 818 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~-~~l~~L 818 (951)
+..+.+|+.|++++|.+.. ++. +..+. +|+.|++++|.... + ..++.+++|++|++++|.++.+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556677777777776553 343 44443 77777777776443 3 45777888888888888888777554 788888
Q ss_pred cEEeeccCCCCccCCcccCC--cCCCCCCCCEEeccCCCCCCcCcc----CCCCCCCCEEEccCCCCcccc
Q 002220 819 RQLSLIGCSELKCSGWVLPT--RISKLSSLERLQLSGCEIKEIPED----IDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 819 ~~L~l~~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~~l~~~----l~~l~~L~~L~L~~n~l~~l~ 883 (951)
+.|++++|.+.. +|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.+....
T Consensus 91 ~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 91 TELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp CEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 888888887754 343 577888899999999988888775 778899999999998776544
No 148
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=1.5e-10 Score=129.14 Aligned_cols=277 Identities=13% Similarity=0.076 Sum_probs=161.7
Q ss_pred CCCCcccchhhHHHHHHhhccC--CCCcEEEEEEecCCChhHHHHHHHHHHhhccc-----c-ceeecccccchhcCCCC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIG--LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF-----E-GKCFMPNVREESENGGG 255 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~~ 255 (951)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++.....+ . ..+|+.+.. ...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH-----RET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT-----SCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc-----CCC
Confidence 3478999999999999988532 34567899999999999999999998764431 1 233443211 234
Q ss_pred hHHHHHHHHHHHhcCccccCC-CCC-hHHHHHHh--cCCcEEEEEeCCCChHH----HHHH---HhccCCC--CCCCEEE
Q 002220 256 LVYLRDRVVSEIFQEDIKIGT-PYL-PDYIVERL--NRMKVLTVLDDVNKVRQ----LHYL---ACVLDQF--GPGSRII 322 (951)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~-~~~-~~~l~~~l--~~~~~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~Il 322 (951)
...+...++.++......... ... .+.+.+.+ .+++.+||||+++.... .+.+ ....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 456667777776432211111 011 13444444 34688999999975432 1222 2222111 4466788
Q ss_pred EEeCCchh--------hhhcCCCccceEEcCCCChhhhHHHHhhhhc---cCCCCChhHHHHHHHHHHHcC---CCch-H
Q 002220 323 ITTRDKRI--------LDDFGVCDTDIYEVNKLRFHEALVLFSNFAF---KENQCPGDLLALLERVLKYAN---GNPL-A 387 (951)
Q Consensus 323 vTtR~~~v--------~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~PL-a 387 (951)
+||+.... ...++. ..+.+++++.++..+++...+. ......+ +..+.++++++ |.|- +
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~---~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGE---VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTS---EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCC---eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHH
Confidence 88876532 222211 4789999999999999988753 2222222 34566777777 9993 3
Q ss_pred HHHHhhhcC-----C---CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheecccCCCC---HH----HH
Q 002220 388 LRVLGSFFH-----R---KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFFAGEK---KD----FL 452 (951)
Q Consensus 388 l~~~~~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~l 452 (951)
+..+..... + -+.+.+..++.... ...+.-++..|+++.+..+..++....+.. .. ..
T Consensus 246 ~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 246 LDLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 333222211 1 25667777666542 234666788999999888877774433321 22 12
Q ss_pred HHHhcCCCC-------cccchHHHHhccCceee
Q 002220 453 TCILDDPNF-------PHCGLNVLIEKSLITMS 478 (951)
Q Consensus 453 ~~~~~~~~~-------~~~~l~~L~~~sLi~~~ 478 (951)
..+....+. ....++.|...|+++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 319 KELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 222221121 23447778888888763
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=9.8e-14 Score=138.63 Aligned_cols=147 Identities=23% Similarity=0.211 Sum_probs=92.6
Q ss_pred ccCCCCcEEecccccccccccc------cccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCC
Q 002220 742 ECLTNLETLDLRLCERLKRVST------SICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENL 815 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l 815 (951)
.....++.++++.+.+.+..|. .+..+++|++|++++|.... +| .+..+++|+.|++++|.++.+|..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 3445555555555555444443 56666666666666665333 55 5666777777777777777766666666
Q ss_pred CCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc--cCCCCCCCCEEEccCCCCcccch---------
Q 002220 816 QGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE--DIDCLSSLEVLDLSGSKIEILPT--------- 884 (951)
Q Consensus 816 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~--------- 884 (951)
++|+.|++++|.... +| .+..+++|+.|++++|.+..++. .+..+++|++|++++|.++..++
T Consensus 93 ~~L~~L~L~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-----LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHCSEEEEEEEECCC-----HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred CcCCEEECcCCcCCc-----CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 777777777776554 33 35566677777777777776553 56677777777777776654321
Q ss_pred --hhcCCCCCCEEe
Q 002220 885 --SIGQLSRLRQLN 896 (951)
Q Consensus 885 --~l~~l~~L~~L~ 896 (951)
.+..+++|+.|+
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 256677777765
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=7.3e-11 Score=122.36 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=118.9
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.....+.....- + ...... ..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~--------~~~~~~-~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-C--------GVCDNC-RE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC-C--------SCSHHH-HH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-C--------cccHHH-HH
Confidence 344579999999999999986433 235889999999999999999998765443211100 0 000000 00
Q ss_pred HHHHHhcCccccC-CCCC-hHHHHHHh--------cCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEeCCchh
Q 002220 263 VVSEIFQEDIKIG-TPYL-PDYIVERL--------NRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITTRDKRI 330 (951)
Q Consensus 263 il~~l~~~~~~~~-~~~~-~~~l~~~l--------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 330 (951)
+............ .... ...+++.+ .+++.+||+||++. ...++.+...+.....+.++|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000000000000 0000 01122211 34679999999964 44566666655544567888888876542
Q ss_pred h-hhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhh
Q 002220 331 L-DDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSF 394 (951)
Q Consensus 331 ~-~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 394 (951)
. ... ......+++++++.++..+++...+.......+ .+..+.|++.++|+|..+..+...
T Consensus 169 ~~~~l-~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 169 LPVTI-LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp SCHHH-HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHH-HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 111 011268999999999999999987754322111 255778999999999988876543
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=5e-11 Score=117.98 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=69.6
Q ss_pred ccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCc
Q 002220 727 LRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVK 806 (951)
Q Consensus 727 L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~ 806 (951)
++++++.++.+|..+. ++|+.|++++|.+. .+|..+.++++|+.|++++|......+..|.++++|++|++++|.++
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4444455555554332 35555555555443 34455555566666666665554444455666666666666666666
Q ss_pred ccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC
Q 002220 807 ELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK 857 (951)
Q Consensus 807 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 857 (951)
.++. .|..+++|+.|+|++|.+... .+..+..+++|+.|+|++|++.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCCee
Confidence 5543 456666666666666665541 2334566666666666666554
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=3.4e-11 Score=130.76 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=125.7
Q ss_pred ccccceeccCCCCCCCcCC--CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCC---CcccCCCC--CCCC
Q 002220 630 AFKLKFIDLHDSHNLTSIP--EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKS---LRCFPRNI--HFRS 702 (951)
Q Consensus 630 l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~---l~~l~~~~--~l~~ 702 (951)
+.+|+.|+|.+ .+ ..++ .+.++++|+.|++.+|......+..|..+.++..+.+..... ...+.... .+..
T Consensus 100 ~~~L~~l~L~~-~i-~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TC-CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cc-cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77888888877 33 3333 244778888888887665555556777766676666544210 11111100 1222
Q ss_pred Cc-eeeCcCCCCCCCCCccccceeeccccCCCCCccCccc----ccCCCCcEEecccccccccccccccCCCCCCEEecc
Q 002220 703 PI-EIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSI----ECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLA 777 (951)
Q Consensus 703 L~-~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l----~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~ 777 (951)
|+ .+.+.. ...++..+ ....+++.+.+.++-...........+++|+.|++.
T Consensus 178 L~~~i~~~~-----------------------~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 178 LETTIQVGA-----------------------MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp CEEEEEECT-----------------------TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred cceeEEecC-----------------------CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence 22 111111 11122111 123445555555432111111111236778888888
Q ss_pred CCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCc-EEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCC
Q 002220 778 FCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLR-QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCE 855 (951)
Q Consensus 778 ~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 855 (951)
+|.....-+..|.++++|+.|++.+| ++.++. .|.++++|+ .|.+.+ .... ..+.+|.++++|+.|++++|.
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~----I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA----IEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE----ECTTTTTTCTTEEEEEECSSC
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE----EchhhhhCCccCCEEEeCCCc
Confidence 77655444566888888888888877 766654 578888888 888877 4433 345678888889999988888
Q ss_pred CCCcCc-cCCCCCCCCEEEc
Q 002220 856 IKEIPE-DIDCLSSLEVLDL 874 (951)
Q Consensus 856 l~~l~~-~l~~l~~L~~L~L 874 (951)
+..++. .|.++++|+.|+.
T Consensus 309 i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTCTTCCCCEEEC
T ss_pred cCccchhhhcCCcchhhhcc
Confidence 888765 5778888888864
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=8.1e-11 Score=114.99 Aligned_cols=126 Identities=23% Similarity=0.335 Sum_probs=74.6
Q ss_pred eeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCC
Q 002220 725 VKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTG 804 (951)
Q Consensus 725 ~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 804 (951)
+.++++++.+..+|..+. ++|+.|++++|.+....+ ..++.+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~ 63 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPH------------------------GVFDKLTQLTKLSLSQNQ 63 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCT------------------------TTTTTCTTCSEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCH------------------------HHhcCcccccEEECCCCc
Confidence 345555666666664332 455555555554433333 334455555555555555
Q ss_pred CcccCcc-ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEccCCCCc
Q 002220 805 VKELPPS-FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 805 i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~ 880 (951)
++.++.. +..+++|+.|++++|..... .+..+..+++|+.|++++|.++.+|.. +..+++|++|+|++|.+.
T Consensus 64 l~~~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 64 IQSLPDGVFDKLTKLTILYLHENKLQSL----PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ceEeChhHccCCCccCEEECCCCCcccc----CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555432 45666666666666655541 333456677777777777777776654 366777888888887766
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=3.4e-10 Score=126.21 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=171.0
Q ss_pred CCCCcccchhhHHHHHHhhcc----CCCCcEEEEEEecCCChhHHHHHHHHHHhhccc-cceeecccccchhcCCCChHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI----GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF-EGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 258 (951)
.++.++||+.+++++..++.. ..+..+.+.|+|++|+||||+|+.+++...... ...+++.+. . ......
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----~-~~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----I-YRNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----T-CCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----c-CCCHHH
Confidence 347899999999999988863 222334899999999999999999998776542 223444321 1 233455
Q ss_pred HHHHHHHHHhcCccccCCC-CCh-HHHHHHhc--CCcEEEEEeCCCCh--HHHHHHHhccCCCC----CCCEEEEEeCCc
Q 002220 259 LRDRVVSEIFQEDIKIGTP-YLP-DYIVERLN--RMKVLTVLDDVNKV--RQLHYLACVLDQFG----PGSRIIITTRDK 328 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~-~~~-~~l~~~l~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~IlvTtR~~ 328 (951)
+...++..+.......... ... +.+.+.+. +++.+||||+++.. ..+..+...+.... .+..||++|+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 6666666654321111100 001 33333332 56889999999653 34555554443222 467788888776
Q ss_pred hhhhhcCC-----CccceEEcCCCChhhhHHHHhhhhcc---CCCCChhHHHHHHHHHHHc---------CCCchHHHHH
Q 002220 329 RILDDFGV-----CDTDIYEVNKLRFHEALVLFSNFAFK---ENQCPGDLLALLERVLKYA---------NGNPLALRVL 391 (951)
Q Consensus 329 ~v~~~~~~-----~~~~~~~l~~L~~~~a~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~~---------~g~PLal~~~ 391 (951)
........ .....+.+++++.++..+++...+.. ..... .+..+.+++.+ +|.|..+..+
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 43222110 00147999999999999999887532 22112 25677888888 7887544433
Q ss_pred hhh-cC-----C---CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheeccc---CC--CCHHHHHH---
Q 002220 392 GSF-FH-----R---KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFF---AG--EKKDFLTC--- 454 (951)
Q Consensus 392 ~~~-L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~--- 454 (951)
... .. + -+.+....+..... ... +.-.+..|+.+.+.++..++.+. .+ .....+..
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~---~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVL---FGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHS---CCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHh---hhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 321 10 1 13444444444332 111 22334567888888877777654 22 22222222
Q ss_pred -HhcCCCC-------cccchHHHHhccCceee-C-------CeE-------EccHHHHHHHHHHHhhh
Q 002220 455 -ILDDPNF-------PHCGLNVLIEKSLITMS-G-------YDI-------RMHDLLQEMGREIVRQE 499 (951)
Q Consensus 455 -~~~~~~~-------~~~~l~~L~~~sLi~~~-~-------~~~-------~mH~lv~~~~~~~~~~e 499 (951)
+....+. ....++.|.++++|... . +++ ..|+++..+...+..+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 320 IVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1111111 23458899999999874 2 222 14566666666555544
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.6e-10 Score=112.78 Aligned_cols=130 Identities=23% Similarity=0.299 Sum_probs=105.0
Q ss_pred CCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEE
Q 002220 771 LGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERL 849 (951)
Q Consensus 771 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 849 (951)
.+.++++++. +..+|..+ .++|+.|++++|.++.++. .+..+++|++|++++|.... ..+..+.++++|+.|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS----LPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEE
T ss_pred CCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----eChhHccCCCccCEE
Confidence 4566676665 34455433 4689999999999998876 46889999999999998876 244557899999999
Q ss_pred eccCCCCCCcCcc-CCCCCCCCEEEccCCCCcccchh-hcCCCCCCEEeeCCCCCCCcCC
Q 002220 850 QLSGCEIKEIPED-IDCLSSLEVLDLSGSKIEILPTS-IGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 850 ~L~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~~~~l~~lp 907 (951)
++++|.++.+|.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|+.....|
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999987764 68899999999999999988854 5789999999999998765544
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=1.3e-09 Score=120.73 Aligned_cols=126 Identities=11% Similarity=0.104 Sum_probs=57.9
Q ss_pred CCCcEEecccccccccccccccCCCCCCEEeccCCCCC-----CccchhcccCCCCcEEEcccCCCcccCc-cccCCCCC
Q 002220 745 TNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNL-----EGFPEILEKMELLETLDLERTGVKELPP-SFENLQGL 818 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L 818 (951)
.+|+.+.|. +.....-...|.++++|+.+.+.++... ..-+..|.++++|+.+.+. +.++.++. .|.++++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 445555553 2222223344555555555555444321 1223445555556555555 23444433 45555555
Q ss_pred cEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCC-CCCCEEEccCCC
Q 002220 819 RQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCL-SSLEVLDLSGSK 878 (951)
Q Consensus 819 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l-~~L~~L~L~~n~ 878 (951)
+.+.|..+ ... ....+|.++ +|+.|.+.+|.+..++. .+..+ .+++.|++..+.
T Consensus 326 ~~l~lp~~-l~~----I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN-VTQ----INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT-CCE----ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc-ccE----EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 55555332 222 123445555 55555555555544332 22333 245555554443
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=5.2e-10 Score=113.96 Aligned_cols=188 Identities=15% Similarity=0.132 Sum_probs=114.6
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|.....++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.+........|+. +.. .. ..+...+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~ 87 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE-MNA-SD-ERGIDVVRH 87 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE-EET-TC-TTCHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE-ecc-cc-ccChHHHHH
Confidence 3445679999999999999986543 234899999999999999999987643322222221 110 11 122222222
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCchhh-hhcCCCc
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKRIL-DDFGVCD 338 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v~-~~~~~~~ 338 (951)
. +........ ....++.+||+||++.. ...+.+...+.....+.++|+||+..... .... ..
T Consensus 88 ~-~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~-~r 152 (226)
T 2chg_A 88 K-IKEFARTAP-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ-SR 152 (226)
T ss_dssp H-HHHHHTSCC-------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-TT
T ss_pred H-HHHHhcccC-------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH-Hh
Confidence 2 111111100 01246889999999754 33555555444445678889888765321 1110 01
Q ss_pred cceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 339 TDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 339 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
...+++++++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 157999999999999999887643221111 245678889999999865544
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=2.9e-09 Score=117.99 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=107.7
Q ss_pred cCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCcc-chhcccCCCCcEEEcccCCCccc
Q 002220 730 WYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGF-PEILEKMELLETLDLERTGVKEL 808 (951)
Q Consensus 730 ~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~i~~l 808 (951)
..|.+..++.....+.+|+.+.|..+ ....-...|.++++|+.+.+..+ +..+ ...|.+ .+|+.+.+ .+.++.+
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-CCCccEE
Confidence 33455555554444567777777633 33444456777777777777653 2333 344555 67888888 4456666
Q ss_pred C-ccccCCCCCcEEeeccCCCCccC-CcccCCcCCCCCCCCEEeccCCCCCCcC-ccCCCCCCCCEEEccCCCCcccc-h
Q 002220 809 P-PSFENLQGLRQLSLIGCSELKCS-GWVLPTRISKLSSLERLQLSGCEIKEIP-EDIDCLSSLEVLDLSGSKIEILP-T 884 (951)
Q Consensus 809 ~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~ 884 (951)
+ ..|.++++|+.+.+.++...... ....+..|.++++|+.+.|.+ .+..++ ..+.++++|+.|.|..+ ++.++ .
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4 36788888888888776554110 012456688888899998884 466664 35677888999998554 77776 5
Q ss_pred hhcCCCCCCEEeeCCCCC
Q 002220 885 SIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 885 ~l~~l~~L~~L~L~~~~~ 902 (951)
.|.++ +|+.|.+.+|..
T Consensus 341 aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SSSSS-CCCEEEECCSSC
T ss_pred hCCCC-CCCEEEEcCCCC
Confidence 67788 899999988643
No 159
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=4.1e-13 Score=134.10 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=109.7
Q ss_pred CCCCCCEEeccCCCC------CCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcC
Q 002220 767 KLKSLGSLLLAFCSN------LEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI 840 (951)
Q Consensus 767 ~l~~L~~L~l~~~~~------~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 840 (951)
....++.++++++.. ++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.... +|..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-----l~~~~ 89 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-----IENLD 89 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-----CSSHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-----ccchh
Confidence 344444444444433 3445558999999999999999999988 88999999999999998775 66667
Q ss_pred CCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccch--hhcCCCCCCEEeeCCCCCCCcCC
Q 002220 841 SKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPT--SIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 841 ~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++. .+..+++|+.|++++|+....+|
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 77789999999999999987 57788999999999999998774 78999999999999987655433
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.09 E-value=6.1e-09 Score=115.96 Aligned_cols=309 Identities=12% Similarity=0.030 Sum_probs=161.1
Q ss_pred ceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc--ccccceecccCCc
Q 002220 541 DIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF--DLENLIALHLPYS 618 (951)
Q Consensus 541 ~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~ 618 (951)
...+...+|.++.+|+.+.+..+ ...+....+.-..+|+.+++..+ ++.++... .+.+|+.+.++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~----------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST----------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT----------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC----------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 45688899999999999988532 12233333333345555555432 44443322 3444544444432
Q ss_pred ccccccc-ccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCcc-CcccccCCcccEEeccCCCCCcccCC
Q 002220 619 EVEQIWK-GQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYI-PLYVQNFHNLGSLSLKGCKSLRCFPR 696 (951)
Q Consensus 619 ~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~ 696 (951)
+..+.. .|.++..+.......... .....+.++.+|+.+.+.++ ...+ ...|.++.+|+.+.+..+ ++.++.
T Consensus 128 -l~~i~~~aF~~~~~~~~~~~~~~~~-i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~ 201 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKEITIPEGVTV-IGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRD 201 (394)
T ss_dssp -CCEECTTTTTTCCCSEEECCTTCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECT
T ss_pred -eeeecceeeecccccccccCccccc-cchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCc
Confidence 222221 233332222222111110 01112335555555555432 1222 224455555555555432 222222
Q ss_pred CC--CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEE
Q 002220 697 NI--HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSL 774 (951)
Q Consensus 697 ~~--~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 774 (951)
.. ++..|+ .+.+..+ ...+........+|+.+.+... ........+.++.+|+.+
T Consensus 202 ~~F~~~~~L~---------------------~i~~~~~-~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 202 YCFAECILLE---------------------NMEFPNS-LYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESI 258 (394)
T ss_dssp TTTTTCTTCC---------------------BCCCCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred hhhccccccc---------------------eeecCCC-ceEeehhhcccCCCceEEECCC-ceecccccccccccceeE
Confidence 11 222222 2222211 2222333444566777776533 222333456677778877
Q ss_pred eccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCC
Q 002220 775 LLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGC 854 (951)
Q Consensus 775 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 854 (951)
.+..+. .......+..+.+|+.+....+.+. ...+..+.+|+.+.+..+ ... .-..+|.++.+|+.++|.++
T Consensus 259 ~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~----I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 259 SIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKF----IGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp EECCTT-CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCE----ECTTTTTTCTTCCEECCCTT
T ss_pred EcCCCc-ceeeccccccccccceeccCceeec--cccccccccccccccccc-cce----echhhhcCCCCCCEEEeCCc
Confidence 776542 2233445677777777776654332 124667788888888653 222 23456788888888888643
Q ss_pred CCCCcC-ccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCC
Q 002220 855 EIKEIP-EDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLD 899 (951)
Q Consensus 855 ~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~ 899 (951)
++.+. ..+.++.+|+.++|..+ ++.++ .++.+|++|+.+++..
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 66654 45677888888888765 77776 5678888888888854
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=7e-10 Score=107.58 Aligned_cols=102 Identities=20% Similarity=0.330 Sum_probs=67.3
Q ss_pred cEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEEc
Q 002220 796 ETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLDL 874 (951)
Q Consensus 796 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~L 874 (951)
+.+++++|.++.+|..+. ++|+.|+|++|.+.. ..|..+.++++|+.|+|++|.++.+|.. +..+++|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 566666666666666443 667777777766655 2455566777777777777777776654 366777777777
Q ss_pred cCCCCcccchh-hcCCCCCCEEeeCCCCCC
Q 002220 875 SGSKIEILPTS-IGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 875 ~~n~l~~l~~~-l~~l~~L~~L~L~~~~~l 903 (951)
++|+|+.+|.. +..+++|+.|+|++|+.-
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777766643 666777777777776543
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=8.7e-10 Score=106.55 Aligned_cols=103 Identities=22% Similarity=0.343 Sum_probs=60.5
Q ss_pred CcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCCCCCCEEE
Q 002220 795 LETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCLSSLEVLD 873 (951)
Q Consensus 795 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l~~L~~L~ 873 (951)
.+.+++++|.++.+|..+ .++|+.|+|++|.+.. ..|..+.++++|+.|+|++|.++.+|.. +..+++|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 345566666666555543 2556666666665554 2344556666666666666666665543 35666666666
Q ss_pred ccCCCCcccch-hhcCCCCCCEEeeCCCCCC
Q 002220 874 LSGSKIEILPT-SIGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 874 L~~n~l~~l~~-~l~~l~~L~~L~L~~~~~l 903 (951)
|++|+++.+|. .+..+++|+.|+|++|+..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666666653 3566666666666665543
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.2e-09 Score=105.54 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=58.9
Q ss_pred eeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccC
Q 002220 724 VVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERT 803 (951)
Q Consensus 724 L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 803 (951)
.+.++++++.++.+|..+. ++|+.|+|++|.+....+..+.++++|++|++++|......+..|..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3466777777777776553 66777777777665555555666666666666666544333344455555555555555
Q ss_pred CCcccCc-cccCCCCCcEEeeccCC
Q 002220 804 GVKELPP-SFENLQGLRQLSLIGCS 827 (951)
Q Consensus 804 ~i~~l~~-~~~~l~~L~~L~l~~~~ 827 (951)
.++.++. .+..+++|+.|+|++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 5555543 24444455555554444
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=1.2e-09 Score=105.81 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=53.5
Q ss_pred eeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCC
Q 002220 725 VKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTG 804 (951)
Q Consensus 725 ~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 804 (951)
+.++++++.+..+|..+. ++|+.|+|++|.+....|..+.++++|+.|+|++|......+..|..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666677777776553 666667766666555555555555555555555554333222334445555555555555
Q ss_pred CcccCcc-ccCCCCCcEEeeccCC
Q 002220 805 VKELPPS-FENLQGLRQLSLIGCS 827 (951)
Q Consensus 805 i~~l~~~-~~~l~~L~~L~l~~~~ 827 (951)
++.+|.. +..+++|+.|+|++|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 5444432 3444444444444443
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=6.6e-11 Score=129.86 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=27.4
Q ss_pred CCCCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEccCCCCcc-----cchhhcCCCCCCEEeeCCCC
Q 002220 841 SKLSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDLSGSKIEI-----LPTSIGQLSRLRQLNLLDCN 901 (951)
Q Consensus 841 ~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~~~ 901 (951)
..+++|+.|+|++|.+.. ++..+..+++|++|+|++|.|+. ++..+..+++|+.|+|++|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 344445555555554442 23333344455555555554442 22233344555555555543
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=1.8e-09 Score=116.82 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=112.3
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-ccc-eeecccccchhcCCCChHHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEG-KCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l~ 260 (951)
.....++|++..++.+.+++..+.. +.+.|+|++|+||||+|+.+++.+... +.. .+++.. +. ..+...+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~----~~-~~~~~~i- 89 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA----SD-DRGIDVV- 89 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT----TS-CCSHHHH-
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC----cc-ccChHHH-
Confidence 3446799999999999999865432 238999999999999999999876332 221 222211 11 1122222
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHh-cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCchh-hhhcCC
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERL-NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKRI-LDDFGV 336 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v-~~~~~~ 336 (951)
+.++..+..... .+ .+++.++|+||++.. ...+.+...+.....++++|+||+...- .....
T Consensus 90 ~~~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~- 155 (323)
T 1sxj_B 90 RNQIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ- 155 (323)
T ss_dssp HTHHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HHHHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH-
Confidence 222222221100 01 245889999999753 3344444444333567788888876432 11110
Q ss_pred CccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH-HHHHh
Q 002220 337 CDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA-LRVLG 392 (951)
Q Consensus 337 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-l~~~~ 392 (951)
.....+++.+++.++..+++...+.......+ .+.++.+++.++|.|.. +..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT--NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 01168999999999999999887642221111 24567899999999954 44443
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=1.9e-10 Score=126.28 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=108.6
Q ss_pred ceeeccccCCCCCccC-----cccc-cCCCCcEEecccccccccccccc-cCCCCCCEEeccCCCCCCccchh----c-c
Q 002220 723 KVVKLRLWYTPIEEVP-----SSIE-CLTNLETLDLRLCERLKRVSTSI-CKLKSLGSLLLAFCSNLEGFPEI----L-E 790 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp-----~~l~-~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~----l-~ 790 (951)
+++.|++++|.+.... ..+. ..++|+.|+|++|.+.......+ ..+++|++|+|++|......... + .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4566666666665332 2222 23688888888887654433222 34567888999888754432222 2 3
Q ss_pred cCCCCcEEEcccCCCcc-----cCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-----cC
Q 002220 791 KMELLETLDLERTGVKE-----LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-----IP 860 (951)
Q Consensus 791 ~l~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~ 860 (951)
..++|++|++++|.++. ++..+..+++|++|+|++|.+.......++..+...++|+.|+|++|.++. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 46789999999998863 444567788899999999886543211234556677889999999999884 44
Q ss_pred ccCCCCCCCCEEEccCCCCccc
Q 002220 861 EDIDCLSSLEVLDLSGSKIEIL 882 (951)
Q Consensus 861 ~~l~~l~~L~~L~L~~n~l~~l 882 (951)
..+...++|++|+|++|.|+..
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHhCCCCCEEeccCCCCCHH
Confidence 4555678899999999988743
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.5e-07 Score=104.62 Aligned_cols=305 Identities=14% Similarity=0.116 Sum_probs=181.0
Q ss_pred ceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCc-cccccceecccCCcc
Q 002220 541 DIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLD-FDLENLIALHLPYSE 619 (951)
Q Consensus 541 ~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~~~ 619 (951)
...+...+|.++++|+.+.+..+ + ..+....+.-..+|+.+.+.. .++.+... |.-..+....+. ..
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l---------~~I~~~aF~~c~~L~~i~~p~-~l~~i~~~aF~~~~~~~~~~~-~~ 149 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-V---------KMIGRCTFSGCYALKSILLPL-MLKSIGVEAFKGCDFKEITIP-EG 149 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-C---------CEECTTTTTTCTTCCCCCCCT-TCCEECTTTTTTCCCSEEECC-TT
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-c---------eEccchhhcccccchhhcccC-ceeeecceeeecccccccccC-cc
Confidence 55788899999999999998653 1 222333333333344333221 12222211 111111111111 12
Q ss_pred ccccc-cccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccC-cccccCCcccEEeccCCCCCcccCC-
Q 002220 620 VEQIW-KGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIP-LYVQNFHNLGSLSLKGCKSLRCFPR- 696 (951)
Q Consensus 620 i~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~l~~- 696 (951)
+..+. ..|.++.+|+.+.+.++.....-..+.++.+|+.+.+..+ +..++ ..+.++..|+.+.+..+. ..+..
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~ 225 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL--YYLGDF 225 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC--CEECTT
T ss_pred ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc--eEeehh
Confidence 22332 3477888899998876532211223447888998888763 34333 467777788877765421 11111
Q ss_pred CCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccC-cccccCCCCcEEecccccccccccccccCCCCCCEEe
Q 002220 697 NIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVP-SSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLL 775 (951)
Q Consensus 697 ~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ 775 (951)
.....+|+.+.+.. .+..+. ..+..+.+|+.+.+..+ ........+.++..|+.+.
T Consensus 226 ~~~~~~l~~i~ip~----------------------~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 226 ALSKTGVKNIIIPD----------------------SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTTTCCCCEEEECT----------------------TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEE
T ss_pred hcccCCCceEEECC----------------------CceecccccccccccceeEEcCCC-cceeeccccccccccceec
Confidence 11233444433321 122232 23567778888888754 3334445577788888877
Q ss_pred ccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCC
Q 002220 776 LAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGC 854 (951)
Q Consensus 776 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 854 (951)
+.... .....+..+.+|+.+.+..+ ++.++. +|.++++|+.+.|..+ ... .-..+|.++.+|+.+.+..+
T Consensus 283 ~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~----I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 283 YGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE----IGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE----ECTTTTTTCTTCCEECCCTT
T ss_pred cCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE----EhHHhccCCCCCCEEEECcc
Confidence 76542 22245778889999988654 666644 6888999999998643 222 24567889999999999776
Q ss_pred CCCCcC-ccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEE
Q 002220 855 EIKEIP-EDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQL 895 (951)
Q Consensus 855 ~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L 895 (951)
+..+. ..+.++++|+.++|..+ ++.+...+.++++|+.+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred -ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 66654 46788999999999764 55556678888888765
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=1.8e-08 Score=109.20 Aligned_cols=187 Identities=18% Similarity=0.175 Sum_probs=112.4
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc-cc-eeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF-EG-KCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 259 (951)
|....+++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.... .. .+.+. .... .+...+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~----~~~~~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDE----RGINVI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCH----HHHHTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-cccc----CchHHH
Confidence 3445679999999999999986543 33489999999999999999998764322 11 11111 0000 000001
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCchh-hhhcCC
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKRI-LDDFGV 336 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v-~~~~~~ 336 (951)
.. .+........ ...+++.++|+|+++.. ...+.+...+.....++++|+||..... .....
T Consensus 94 ~~-~~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~- 158 (327)
T 1iqp_A 94 RE-KVKEFARTKP-------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ- 158 (327)
T ss_dssp HH-HHHHHHHSCC-------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-
T ss_pred HH-HHHHHHhhCC-------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH-
Confidence 11 1111100000 01256789999999754 4455565555444567888888876532 11110
Q ss_pred CccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 337 CDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 337 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
.....+.+.+++.++..+++...+...... -..+..+.+++.++|.|..+..+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 011578999999999999998876432221 112566788899999998655443
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=3.1e-07 Score=99.14 Aligned_cols=262 Identities=13% Similarity=0.066 Sum_probs=145.5
Q ss_pred CCCCCCcccchhhHHHHHHhhcc---CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI---GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
|...+.++|++..++.+...+.. .....+.+.|+|++|+|||++|+.+++.....| .++... . ......
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~~~----~-~~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTSGP----A-IEKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEECTT----T-CCSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEecc----c-cCChHH
Confidence 34457899999999998888752 112346788999999999999999998764333 222110 0 111111
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCCC------------------CCC
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQF------------------GPG 318 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~g 318 (951)
+...+.. . ..++.++++|+++... ..+.+...+... .++
T Consensus 80 ----l~~~l~~----------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 ----LAAILAN----------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----HHHHHTT----------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----HHHHHHH----------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111110 0 1246689999997543 233333222111 134
Q ss_pred CEEEEEeCCchhh-hhc--CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 002220 319 SRIIITTRDKRIL-DDF--GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFF 395 (951)
Q Consensus 319 s~IlvTtR~~~v~-~~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L 395 (951)
.++|.||...... ... ... ..+.+.+++.++..+++...+.......+ .+..+.++++++|.|-.+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~--~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFG--IVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCS--CEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhccc--EEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5677776644321 111 111 57999999999999999887643222111 2567889999999998877655433
Q ss_pred CC---------CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheecccCC--CCHHHHHHHhcCCCC-cc
Q 002220 396 HR---------KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFFAG--EKKDFLTCILDDPNF-PH 463 (951)
Q Consensus 396 ~~---------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~~~-~~ 463 (951)
.. -+.+....++..+ ...+..++..++..+..+.....+ .....+...+.-..- ..
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 21 1334444443332 223456777777776665543332 234444444321110 11
Q ss_pred cchH-HHHhccCceeeCCeEEccHHH
Q 002220 464 CGLN-VLIEKSLITMSGYDIRMHDLL 488 (951)
Q Consensus 464 ~~l~-~L~~~sLi~~~~~~~~mH~lv 488 (951)
..++ .+++.+++........+-+..
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~ 308 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELA 308 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHH
T ss_pred HHHhHHHHHhcchhcCCccceecHHH
Confidence 1122 377788887765444444443
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.2e-08 Score=108.15 Aligned_cols=92 Identities=25% Similarity=0.254 Sum_probs=43.8
Q ss_pred ccchhcccCCCCcEEEccc-CCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc
Q 002220 784 GFPEILEKMELLETLDLER-TGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE 861 (951)
Q Consensus 784 ~~~~~l~~l~~L~~L~l~~-n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~ 861 (951)
.+|. +..+++|+.|+|++ |.+..++. .|..+++|+.|+|++|.+.. ..|..|.++++|+.|+|++|.++.+|.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF----VAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE----ECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce----eCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 3444 44444555555543 55544442 34455555555555554443 233344555555555555555555444
Q ss_pred cCCCCCCCCEEEccCCCCc
Q 002220 862 DIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 862 ~l~~l~~L~~L~L~~n~l~ 880 (951)
.+....+|+.|+|.+|.+.
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 3322222555555555544
No 172
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.68 E-value=4e-06 Score=93.01 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=56.5
Q ss_pred ceeechhhhccCC-CccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCC---CCCCCCcc--ccccceecc
Q 002220 541 DIHLNSRAFANMS-NLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYP---LKTLPLDF--DLENLIALH 614 (951)
Q Consensus 541 ~~~~~~~~f~~l~-~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~---l~~lp~~~--~l~~L~~L~ 614 (951)
...+...+|.+++ .|+.+.+..+ ...+....+.-..+|+.+.+..+. ++.++... ...+|+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s----------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT----------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP 120 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT----------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred eeEcCHhhccCCCCcCEEEEECCC----------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence 3467788888885 5888888532 223334444444566666665542 34443322 345555555
Q ss_pred cCCcccccccc-ccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCC
Q 002220 615 LPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCN 663 (951)
Q Consensus 615 L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~ 663 (951)
+..+ ++.+.. .+..+.+|+.+.+..+.....-..+..+.+|+.+.+..
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cCCc-cceehhhhhhhhcccccccccceeeeecccceecccccccccccc
Confidence 5433 344433 24555566666554332111111233555555555543
No 173
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=5.1e-08 Score=106.53 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=76.4
Q ss_pred ccccCC-CCCccCcccccCCCCcEEeccc-ccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCC
Q 002220 727 LRLWYT-PIEEVPSSIECLTNLETLDLRL-CERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTG 804 (951)
Q Consensus 727 L~l~~~-~l~~lp~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 804 (951)
++.+++ .+..+|. +..+++|+.|+|++ |.+....+..|.+|++|+.|+|++|......|..|.++++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 7778888 88888888888885 66666666778888888888888887666666777888888888888888
Q ss_pred CcccCccccCCCCCcEEeeccCCCCc
Q 002220 805 VKELPPSFENLQGLRQLSLIGCSELK 830 (951)
Q Consensus 805 i~~l~~~~~~l~~L~~L~l~~~~~~~ 830 (951)
++.+|.......+|+.|+|.+|....
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccC
Confidence 88777654333348888888776553
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=2.5e-07 Score=102.10 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=113.7
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
.....++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++......... ... ...... ...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~--------~~~~~~-~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP--------CGVCDN-CRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC--------CSSSHH-HHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC--------CcccHH-HHH
Confidence 344679999999999999986433 235788999999999999999998764332110 000 000000 001
Q ss_pred HHHH----Hhc-CccccCCCCChHHHHHHh-----cCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEeCCch-
Q 002220 263 VVSE----IFQ-EDIKIGTPYLPDYIVERL-----NRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITTRDKR- 329 (951)
Q Consensus 263 il~~----l~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTtR~~~- 329 (951)
+... +.. .............+.+.+ .+++.++|+||++. ....+.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 1000 000 000001111223333333 24578999999964 3445566555544455677777776443
Q ss_pred hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 330 ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 330 v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
+..... .....+++.+++.++..+++...+-......+ .+.++.+++.++|.|..+..+.
T Consensus 162 l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 211111 11268999999999999999876532221111 2456788999999998776554
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=2.2e-07 Score=100.10 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=109.8
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh-ccccc-eeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS-REFEG-KCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~-~~~~~~~~~~~~~~~~~~~l 259 (951)
|....+++|++..++.+.+++..+. ...+.++|++|+|||++|+.+++.+. ..+.. .+.+. ...... ...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 88 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG-IDVVRHK 88 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTC-TTTSSHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccC-hHHHHHH
Confidence 3344679999999999999886432 23389999999999999999998753 22211 11111 100000 0111111
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHh-cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCch-hhhhcC
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERL-NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKR-ILDDFG 335 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~~~ 335 (951)
...+. ... .+ .+++.++|+|+++.. ...+.+...+.....++++|+||.... +.....
T Consensus 89 ~~~~~----~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 89 IKEFA----RTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp HHHHH----HSC--------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHH----hcC--------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 11110 000 01 245789999999643 334556655555556778888876553 211110
Q ss_pred CCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 336 VCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 336 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
. ....+++.+++.++..+++...+.......+ .+..+.+++.++|.+..+..
T Consensus 151 s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 151 S-RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT--EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp T-TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC--HHHHHHHHHTTTTCHHHHHH
T ss_pred h-hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 0 1168999999999999999877643322111 24567788889999876543
No 176
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2.8e-08 Score=107.83 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=99.2
Q ss_pred CcccccCCCCcEEecccccc---------cccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc
Q 002220 738 PSSIECLTNLETLDLRLCER---------LKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL 808 (951)
Q Consensus 738 p~~l~~l~~L~~L~Ls~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l 808 (951)
..++..+++|+.|.+.+... ...+...+..+++|+.|.+++|.... ++. + .+++|+.|++..+.+..-
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChH
Confidence 34456677888887754421 11234445677888888888874332 333 3 378889998888776521
Q ss_pred -Cccc--cCCCCCcEEeeccCCCC--ccCCc-ccCCcC--CCCCCCCEEeccCCCCCC-cCcc---CCCCCCCCEEEccC
Q 002220 809 -PPSF--ENLQGLRQLSLIGCSEL--KCSGW-VLPTRI--SKLSSLERLQLSGCEIKE-IPED---IDCLSSLEVLDLSG 876 (951)
Q Consensus 809 -~~~~--~~l~~L~~L~l~~~~~~--~~~~~-~~~~~~--~~l~~L~~L~L~~~~l~~-l~~~---l~~l~~L~~L~L~~ 876 (951)
...+ ..+|+|+.|+|+.+... ...+. .+...+ ..+|+|+.|+|.+|.+.. .+.. ...+++|++|+|+.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 1122 36888888888643211 11000 011122 357889999998888763 1111 13577899999988
Q ss_pred CCCcc-----cchhhcCCCCCCEEeeCCCC
Q 002220 877 SKIEI-----LPTSIGQLSRLRQLNLLDCN 901 (951)
Q Consensus 877 n~l~~-----l~~~l~~l~~L~~L~L~~~~ 901 (951)
|.++. ++..+.++++|+.|+|++|.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 88774 44455677888888888874
No 177
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.8e-07 Score=98.31 Aligned_cols=164 Identities=11% Similarity=0.010 Sum_probs=98.3
Q ss_pred CcccchhhHHHHHHhhcc--CCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc-------ceeecccccchhcCCCChH
Q 002220 187 GFVGLNSRIQKIKSLLCI--GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE-------GKCFMPNVREESENGGGLV 257 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~ 257 (951)
.+.|||+++++|...|.. .......+.|+|++|+|||++|+++++.+..... ..+++.+.. .....
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~-----~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE-----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC-----CC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc-----cCCHH
Confidence 378999999999988752 2345678899999999999999999997753221 133443222 22345
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHHHh------cCCcEEEEEeCCCChHHHHHHHhccCCC-CCCC--EEEEEeCCc
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVERL------NRMKVLTVLDDVNKVRQLHYLACVLDQF-GPGS--RIIITTRDK 328 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~~~~~~l~~~~~~~-~~gs--~IlvTtR~~ 328 (951)
.+...++.++.+.... .....+.+.+.+ .+++++++||+++...+-+.+...+.|. ...+ .||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 6677778877554221 111223444332 4567999999997653222222221110 1222 333444333
Q ss_pred hh---------hhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 329 RI---------LDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 329 ~v---------~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
+. .+.++. ..+.+++++.+|..+++.+++
T Consensus 174 d~~~~~L~~~v~SR~~~---~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKAHF---TEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHTTE---EEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCCc---eEEEeCCCCHHHHHHHHHHHH
Confidence 22 223322 579999999999999998776
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=2.5e-08 Score=108.26 Aligned_cols=156 Identities=15% Similarity=0.230 Sum_probs=89.2
Q ss_pred ccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcc--cCCCCcEEEccc--CC------CcccC
Q 002220 740 SIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILE--KMELLETLDLER--TG------VKELP 809 (951)
Q Consensus 740 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~--n~------i~~l~ 809 (951)
.+..+++|+.|+|++|... .++. + .+++|++|.+..|.........+. .+++|+.|+|+. +. +..+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666655221 1222 2 256667776666553332222232 567777777642 11 11121
Q ss_pred ccc--cCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEccCCCCccc
Q 002220 810 PSF--ENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDLSGSKIEIL 882 (951)
Q Consensus 810 ~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l 882 (951)
..+ ..+++|+.|++.+|.+.......+.. ...+++|+.|+|+.|.+.. ++..+.++++|+.|+|++|.++.-
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 222 35789999999888765321000111 1357899999999998885 455556788999999999987632
Q ss_pred -chhhcC-CCCCCEEeeCCCC
Q 002220 883 -PTSIGQ-LSRLRQLNLLDCN 901 (951)
Q Consensus 883 -~~~l~~-l~~L~~L~L~~~~ 901 (951)
-..+.. + ...++++++.
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 122332 2 4667887755
No 179
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.53 E-value=3.3e-07 Score=90.41 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=42.2
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+.++||+++++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999864 33456889999999999999999987643
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=6.2e-06 Score=91.49 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=71.8
Q ss_pred hhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC-ccCCC
Q 002220 787 EILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP-EDIDC 865 (951)
Q Consensus 787 ~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~l~~ 865 (951)
..|.++.+|+.+.+..+...--...|.++++|+.+.+.. .... ....+|.++.+|+.+.|..+ ++.+. ..+.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~----I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITE----LPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCE----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCC-cccc----cCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 456777888888876544332234567788888888753 2222 23456778888888888753 55553 35677
Q ss_pred CCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCCC
Q 002220 866 LSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 866 l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~ 900 (951)
+.+|+.+.|..+ ++.+. ..|.+|++|+.+++.++
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888888888543 66676 56788888888888764
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=7.8e-07 Score=93.95 Aligned_cols=181 Identities=22% Similarity=0.200 Sum_probs=102.1
Q ss_pred CCCCCcccchhhHHHHHHhhccC-----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIG-----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE 251 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (951)
...++++|++..+++|.+.+... ....+-+.|+|++|+|||++|+.+++.....|-.+.. .....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~----~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG----SELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG----GGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh----HHHHH
Confidence 34567999999999998877421 1345678999999999999999999876544332211 11110
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------------H---HHHHHHhccC--
Q 002220 252 NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------------R---QLHYLACVLD-- 313 (951)
Q Consensus 252 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~-- 313 (951)
........ ... ..+.......+.+|+||+++.. . .+..+...+.
T Consensus 90 --~~~~~~~~-~~~---------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 90 --KFIGEGAS-LVK---------------DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp --CSTTHHHH-HHH---------------HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred --hccchHHH-HHH---------------HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 00000000 000 1122222345689999999543 1 1222222221
Q ss_pred CCCCCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chH
Q 002220 314 QFGPGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLA 387 (951)
Q Consensus 314 ~~~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLa 387 (951)
....+..||.||........ .... ..+.++..+.++..+++...+.......+ .....+++.+.|. |-.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFD--RIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEE--EEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCC--eEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHH
Confidence 12345677788875533221 1122 57999999999999999887643222111 1135566667664 434
Q ss_pred HHH
Q 002220 388 LRV 390 (951)
Q Consensus 388 l~~ 390 (951)
+..
T Consensus 227 i~~ 229 (285)
T 3h4m_A 227 LKA 229 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.46 E-value=4.9e-07 Score=92.89 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=98.5
Q ss_pred CCCCcccch---hhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHH
Q 002220 184 YSDGFVGLN---SRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 184 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
..++|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++........+.|+.. ..... . .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~-~--~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHAS-I--S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGG-S--C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHH-H--H----
Confidence 346788743 4456666665432 45788999999999999999999876654334445432 11111 0 0
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChHH----HHHHHhccCCC-CCC-CEEEEEeCCch-----
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQ----LHYLACVLDQF-GPG-SRIIITTRDKR----- 329 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~l~~~~~~~-~~g-s~IlvTtR~~~----- 329 (951)
.+.+ +.+ .++.++|+||++.... .+.+...+... ..+ .++|+||+...
T Consensus 96 -------------------~~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 -------------------TALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -------------------GGGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -------------------HHHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 011 3456899999864321 22232221110 122 24777776432
Q ss_pred ----hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 330 ----ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 330 ----v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
+...+... ..+++++++.++..+++...+....... ..+..+.+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~--~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWG--LTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHS--EEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcC--ceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHH
Confidence 11111111 5799999999999999988764222111 12456788888999876655443
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=2.6e-06 Score=97.68 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=103.6
Q ss_pred CCCCCcccchhhHHHHHHhhccC---------------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeeccccc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIG---------------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVR 247 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 247 (951)
.....++|++..+++|.+++... .+..+.+.|+|++|+||||+|+.+++... +.. +.+..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~~-i~in~-- 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YDI-LEQNA-- 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CEE-EEECT--
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEeC--
Confidence 34567999999999999998631 01347899999999999999999998762 221 22211
Q ss_pred chhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHH--HhcCCcEEEEEeCCCChH-----HHHHHHhccCCCCCCCE
Q 002220 248 EESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVE--RLNRMKVLTVLDDVNKVR-----QLHYLACVLDQFGPGSR 320 (951)
Q Consensus 248 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~--~l~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~ 320 (951)
+. ... .......+......... ........+ ...+++.+||+|+++... .+..+...+.. .+..
T Consensus 111 --s~-~~~-~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 111 --SD-VRS-KTLLNAGVKNALDNMSV---VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp --TS-CCC-HHHHHHTGGGGTTBCCS---TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSC
T ss_pred --CC-cch-HHHHHHHHHHHhccccH---HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCC
Confidence 11 111 11222211111111000 000011100 123567899999995431 12333332221 2334
Q ss_pred EEEEeCCch---hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCC-CChhHHHHHHHHHHHcCCCc-hHHHHH
Q 002220 321 IIITTRDKR---ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ-CPGDLLALLERVLKYANGNP-LALRVL 391 (951)
Q Consensus 321 IlvTtR~~~---v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P-Lal~~~ 391 (951)
||+++.+.. +....... ..+.+++++.++..+.+...+..... ..+ +....|++.++|.+ -++..+
T Consensus 182 iIli~~~~~~~~l~~l~~r~--~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVC--LDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTS--EEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEEcCCCCccchhhHhce--EEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 555554432 22211222 67999999999999998876643221 122 34677888899854 444444
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=2.4e-06 Score=93.38 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=110.3
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc--cccce-eecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR--EFEGK-CFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~-~~~~~~~~~~~~~~~~~~ 258 (951)
|.....++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.+.. .+... ..+. . +. ..+...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~---~~-~~~~~~ 105 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-A---SD-ERGISI 105 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-S---SS-CCCHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-c---cc-ccchHH
Confidence 34456799999999999999864432 23889999999999999999986542 12211 1111 1 11 122222
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCch-hhhhcC
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKR-ILDDFG 335 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~~~ 335 (951)
+... ........... .........-..++-++++|+++.. .....+...+.......++|++|.... +.....
T Consensus 106 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 106 VREK-VKNFARLTVSK---PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp HTTH-HHHHHHSCCCC---CCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHH-HHHHhhhcccc---cchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 2221 22211110000 0000111111235579999998643 334445444433345667777775442 211110
Q ss_pred CCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 336 VCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 336 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
.....+.+.+++.++..+.+...+......-+ .+..+.|++.++|.|-.+..+
T Consensus 182 -sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 -SQCSKFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp -HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHHH
T ss_pred -ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 01157899999999999999887643222111 256788999999998764443
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.40 E-value=5.7e-06 Score=90.04 Aligned_cols=202 Identities=13% Similarity=0.154 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHH
Q 002220 162 AQLVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 162 ~~~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
...++.+...+..+. ++...++++|.+..++.|.+.+.. .....+.|.|+|++|+|||++|+++++
T Consensus 64 ~~~~~~i~~~i~~~~----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 64 PKMIELIMNEIMDHG----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp HHHHHHHHHHTBCCS----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHhhcccCC----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 444555555544433 334456799999999999887742 113456789999999999999999998
Q ss_pred HhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh---------
Q 002220 232 LISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--------- 302 (951)
Q Consensus 232 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------- 302 (951)
.....|- .+. .........+ .. ..... ..+...-..++.+|+||+++..
T Consensus 140 ~~~~~~~---~i~-~~~l~~~~~g--~~-~~~~~---------------~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 140 QSGATFF---SIS-ASSLTSKWVG--EG-EKMVR---------------ALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HTTCEEE---EEE-GGGGCCSSTT--HH-HHHHH---------------HHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HcCCeEE---EEe-hHHhhccccc--hH-HHHHH---------------HHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 7643331 221 1111110001 00 00011 1111122346789999998432
Q ss_pred ----HHHHHHHhccC----CCCCCCEEEEEeCCchhhh-h--cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHH
Q 002220 303 ----RQLHYLACVLD----QFGPGSRIIITTRDKRILD-D--FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLL 371 (951)
Q Consensus 303 ----~~~~~l~~~~~----~~~~gs~IlvTtR~~~v~~-~--~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~ 371 (951)
.....+...+. ....+..||.||....... . .... ..+.+...+.++..+++...+......-. .
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~--~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~ 273 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV--KRLYIPLPEASARKQIVINLMSKEQCCLS--E 273 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHHTSCBCCC--H
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc--eEEEeCCcCHHHHHHHHHHHHhhcCCCcc--H
Confidence 11223332222 1123455666775542211 1 1232 57889999999999988776633221111 2
Q ss_pred HHHHHHHHHcCC-CchHHHHHhh
Q 002220 372 ALLERVLKYANG-NPLALRVLGS 393 (951)
Q Consensus 372 ~~~~~i~~~~~g-~PLal~~~~~ 393 (951)
+..+.+++.+.| .+-.+..+..
T Consensus 274 ~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 274 EEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778888888 4555655543
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.36 E-value=1.6e-06 Score=96.90 Aligned_cols=179 Identities=16% Similarity=0.213 Sum_probs=102.4
Q ss_pred CCcc-cchhhH--HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccc--eeecccccchhcCCCChHHHH
Q 002220 186 DGFV-GLNSRI--QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG--KCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 186 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~ 260 (951)
+.|| |..... ..+......... ...+.|+|++|+||||||+.+++.....+.. ++++.. ..+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-----------~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-----------EKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-----------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-----------HHHH
Confidence 4565 655433 233333332222 6789999999999999999999987665432 233321 1122
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH----HHHHHHhccCC-CCCCCEEEEEeCCc-------
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR----QLHYLACVLDQ-FGPGSRIIITTRDK------- 328 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~------- 328 (951)
..+...+... ....+.+.++.+.-+|++||++... ..+.+...+.. ...|..||+||...
T Consensus 173 ~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 173 NDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 3333333221 1134444444467799999995322 22333322211 24577899988763
Q ss_pred --hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCC-CCChhHHHHHHHHHHHcCCCchHHH
Q 002220 329 --RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKEN-QCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 329 --~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
.+...+... .++.+++++.++..+++.+.+.... ..++ ++...|++.+.|.+-.+.
T Consensus 245 ~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 245 QDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 122223221 5689999999999999988764211 1122 345677788888775443
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.35 E-value=9.6e-06 Score=84.76 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=103.2
Q ss_pred CCCcccchhhHHHHHH-------hhcc-CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCCh
Q 002220 185 SDGFVGLNSRIQKIKS-------LLCI-GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGL 256 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 256 (951)
...++|.+..++++.. .+.. .....+.+.|+|++|+|||++|+.+++.....|- .+....... ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~---~i~~~~~~~--g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI---KICSPDKMI--GFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE---EEECGGGCT--TCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE---EEeCHHHhc--CCch
Confidence 3467888777666655 2221 2345678999999999999999999987543321 111111000 0000
Q ss_pred HHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh------------HHHHHHHhccCC---CCCCCEE
Q 002220 257 VYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV------------RQLHYLACVLDQ---FGPGSRI 321 (951)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~I 321 (951)
......+ . ..+......+..+|+||+++.. ..++.+...+.. .+....|
T Consensus 107 ~~~~~~~-~---------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 107 TAKCQAM-K---------------KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHHHH-H---------------HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHHHH-H---------------HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000000 0 1122223356789999998542 123333333221 2334457
Q ss_pred EEEeCCchhhhhcCCC-c-cceEEcCCCCh-hhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC------chHHHHHh
Q 002220 322 IITTRDKRILDDFGVC-D-TDIYEVNKLRF-HEALVLFSNFAFKENQCPGDLLALLERVLKYANGN------PLALRVLG 392 (951)
Q Consensus 322 lvTtR~~~v~~~~~~~-~-~~~~~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~------PLal~~~~ 392 (951)
|.||............ . ...+.+++++. ++..+++.+.. .. . .+....+++.+.|. .-++..+-
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~-~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF-K---DKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS-C---HHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC-C---HHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 7788777544331111 0 16789999988 66666665432 11 1 23466778888773 23333332
Q ss_pred hhcCCCCHHHHHHHHHHHhc
Q 002220 393 SFFHRKSKSDWEKALENLNR 412 (951)
Q Consensus 393 ~~L~~~~~~~w~~~l~~l~~ 412 (951)
..........+..+++.+..
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHH
T ss_pred HHhhhchHHHHHHHHHHHHH
Confidence 22222234455555555443
No 188
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=6.2e-05 Score=82.91 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=82.3
Q ss_pred ccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCC
Q 002220 763 TSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRIS 841 (951)
Q Consensus 763 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 841 (951)
..+..+.+|+.+.+..+- ...-...+.++.+|+.+.+..+ ++.+.. .|.++.+|+.+.+..+ ... .....|.
T Consensus 211 ~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~----i~~~aF~ 283 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT----VPYLLCS 283 (379)
T ss_dssp TTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE----ECTTTTT
T ss_pred cccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-cee----ccccccc
Confidence 334556666666664431 1122344666777777777654 444433 5677778888887543 222 2344577
Q ss_pred CCCCCCEEeccCCCCCCcC-ccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeC
Q 002220 842 KLSSLERLQLSGCEIKEIP-EDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLL 898 (951)
Q Consensus 842 ~l~~L~~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~ 898 (951)
++.+|+.+.+.++.+..++ ..+.++.+|+.+.|..+ ++.++ .++.+|++|+.+.+.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 8888888888887777765 45677888888888653 67676 567778888877664
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.34 E-value=9.7e-06 Score=86.03 Aligned_cols=184 Identities=18% Similarity=0.139 Sum_probs=101.6
Q ss_pred cCCCCCCcccchhhHHHHHHhhccC----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchh
Q 002220 181 ASTYSDGFVGLNSRIQKIKSLLCIG----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES 250 (951)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 250 (951)
++...++++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++.....|- .+....-..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~---~i~~~~l~~ 92 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL---NISAASLTS 92 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE---EEESTTTSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---EeeHHHHhh
Confidence 3445577999999999998876321 123468899999999999999999987644332 111100000
Q ss_pred cCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------------HHHHHHHhc---cCC
Q 002220 251 ENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------------RQLHYLACV---LDQ 314 (951)
Q Consensus 251 ~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~---~~~ 314 (951)
..........+.+ +......++.+|++|+++.. .....+... ...
T Consensus 93 ~~~~~~~~~~~~~-------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 KYVGDGEKLVRAL-------------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SSCSCHHHHHHHH-------------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred cccchHHHHHHHH-------------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 0000111111111 11122346789999998533 111122221 111
Q ss_pred C--CCCCEEEEEeCCchh-----hhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch-
Q 002220 315 F--GPGSRIIITTRDKRI-----LDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL- 386 (951)
Q Consensus 315 ~--~~gs~IlvTtR~~~v-----~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL- 386 (951)
. +.+..||.||..... ... .. ..+.++..+.++..+++...+-....... .+..+.+++.+.|.+-
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R--~~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRR--FT--KRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGS 227 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHH--CC--EEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhh--CC--eEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHH
Confidence 1 234566777765432 222 22 56788888888888888776533221111 2346678888888875
Q ss_pred HHHHHh
Q 002220 387 ALRVLG 392 (951)
Q Consensus 387 al~~~~ 392 (951)
++..+.
T Consensus 228 ~l~~l~ 233 (297)
T 3b9p_A 228 DLTALA 233 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=2e-06 Score=94.10 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=104.9
Q ss_pred CCCCCCcccchhhHHHHHHhh-ccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccc--------------
Q 002220 182 STYSDGFVGLNSRIQKIKSLL-CIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNV-------------- 246 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~-------------- 246 (951)
|...++++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.++..+...-...+++...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 334467999999999999888 4332 233 89999999999999999998542221111111000
Q ss_pred ------cchhcCCCC--hHHHHHHHHHHHhcCccccCCCCChHHH-HHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCC
Q 002220 247 ------REESENGGG--LVYLRDRVVSEIFQEDIKIGTPYLPDYI-VERLNRMKVLTVLDDVNKV--RQLHYLACVLDQF 315 (951)
Q Consensus 247 ------~~~~~~~~~--~~~l~~~il~~l~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~ 315 (951)
-.......+ .....+..+..+.....- . ..+ ...+..++-++|+|++... ...+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-----~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-D-----FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc-c-----ccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000000000 000112222222111000 0 000 0002336679999999753 2344444444333
Q ss_pred CCCCEEEEEeCCch-hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 316 GPGSRIIITTRDKR-ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 316 ~~gs~IlvTtR~~~-v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
..+.++|++|.+.. +..... .....+++++++.++..+.+...+......-+. .+.++.|++.++|.+-.+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIK-SQCLLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHH-hhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCCHHHHHH
Confidence 45677887776542 222111 011689999999999999998776332211010 14567888889998765443
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.33 E-value=1.7e-05 Score=82.45 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=98.5
Q ss_pred CCCCcccchhhHHHHHHhhc---cC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 184 YSDGFVGLNSRIQKIKSLLC---IG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
..++++|.+..++.+.+++. .. ....+.+.|+|++|+|||++|+.+++.....|- .+.. .......
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~~~~-~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL---AMAG-AEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE---EEET-TTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---Eech-HHHHhhc
Confidence 34678999988888776543 11 123456889999999999999999987654432 1111 1100000
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-----------------HHHHHHhccCC--
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-----------------QLHYLACVLDQ-- 314 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~-- 314 (951)
.+. ....+. ..+.......+.+|++|+++... .+..+...+..
T Consensus 80 ~~~---~~~~~~---------------~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 80 GGL---GAARVR---------------SLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp TTH---HHHHHH---------------HHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred cCh---hHHHHH---------------HHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 000 000000 11222223457899999997541 12233332221
Q ss_pred CCCCCEEEEEeCCchhhhh-c----CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch-HH
Q 002220 315 FGPGSRIIITTRDKRILDD-F----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL-AL 388 (951)
Q Consensus 315 ~~~gs~IlvTtR~~~v~~~-~----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al 388 (951)
...+..||.||........ . ... ..+.++..+.++..+++..++....... ........+++.+.|.+- .+
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLD--RHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCC--EEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCC--eEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHH
Confidence 1235567777765432211 1 222 5788999999999999988764322211 112234677778877654 44
Q ss_pred HH
Q 002220 389 RV 390 (951)
Q Consensus 389 ~~ 390 (951)
..
T Consensus 219 ~~ 220 (262)
T 2qz4_A 219 AN 220 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 192
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.32 E-value=9e-06 Score=87.19 Aligned_cols=184 Identities=13% Similarity=0.036 Sum_probs=103.4
Q ss_pred CCCCCCcccchhhHHHHHHhhc----------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLC----------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE 251 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (951)
+..-.+++|.+..++.|.+.+. ......+-|.|+|++|+|||++|+++++.....|-. +. ......
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~---v~-~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS---VS-SSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE---EE-HHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE---Ec-hHHHhh
Confidence 3345679999999999988772 112234678999999999999999999876544321 11 111000
Q ss_pred CCC-ChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-------------HHHHHHhccC---C
Q 002220 252 NGG-GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-------------QLHYLACVLD---Q 314 (951)
Q Consensus 252 ~~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~---~ 314 (951)
... ......+ ..+...-..++.+|+||+++... ....+...+. .
T Consensus 90 ~~~g~~~~~~~-------------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 90 KWMGESEKLVK-------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TTGGGHHHHHH-------------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred cccchHHHHHH-------------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 000 0001111 11112223466899999996331 1223332222 2
Q ss_pred CCCCCEEEEEeCCchhhhh---cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chHHHH
Q 002220 315 FGPGSRIIITTRDKRILDD---FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLALRV 390 (951)
Q Consensus 315 ~~~gs~IlvTtR~~~v~~~---~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~ 390 (951)
...+..||.||........ .... ..+.++..+.++-.+++..++........ ......+++.+.|. +-.+..
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFE--RRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCC--EEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccC--eEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHH
Confidence 2345666667765432211 0233 57889999999999999887744322111 13456777777774 434444
Q ss_pred Hh
Q 002220 391 LG 392 (951)
Q Consensus 391 ~~ 392 (951)
+.
T Consensus 227 l~ 228 (322)
T 3eie_A 227 VV 228 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.31 E-value=6.5e-06 Score=87.97 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=87.7
Q ss_pred CcccchhhHHHHHHhhcc-------------CCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc----ceeecccccch
Q 002220 187 GFVGLNSRIQKIKSLLCI-------------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE----GKCFMPNVREE 249 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~~~~~~~~~ 249 (951)
.++|.+..++.|.+.+.. .......+.|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 478998888888766531 1234557899999999999999999986643221 122221 1111
Q ss_pred hcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh-cCCcEEEEEeCCC-----------ChHHHHHHHhccCCCCC
Q 002220 250 SENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL-NRMKVLTVLDDVN-----------KVRQLHYLACVLDQFGP 317 (951)
Q Consensus 250 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~ 317 (951)
.....+.. . ..+...+ ..+.-+|++|+++ .......+...+.....
T Consensus 111 ~~~~~g~~--~--------------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 111 VGQYIGHT--A--------------------PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp CCSSTTCH--H--------------------HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred hhhccccc--H--------------------HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 00000000 0 1111111 0134599999997 33344555555544456
Q ss_pred CCEEEEEeCCc----------hhhhhcCCCccceEEcCCCChhhhHHHHhhhhc
Q 002220 318 GSRIIITTRDK----------RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAF 361 (951)
Q Consensus 318 gs~IlvTtR~~----------~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 361 (951)
+..||.||... .+...+ . ..+.+++++.++..+++...+.
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R~--~--~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSRI--A--HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHHE--E--EEEEECCCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHhC--C--eEEEcCCcCHHHHHHHHHHHHH
Confidence 67888888643 222222 2 6799999999999999987764
No 194
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.31 E-value=5.2e-06 Score=92.58 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=103.2
Q ss_pred CCCCCCcccchhhH---HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRI---QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
|...+.+||.+..+ ..|...+..+ ....+.|+|++|+||||+|+.+++.....|...... ..+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~---------~~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAV---------TSGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT---------TCCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec---------cCCHHH
Confidence 34457899999888 6777777543 346789999999999999999999775554322111 223333
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEE-EeCCch--hhhh
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIII-TTRDKR--ILDD 333 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~--v~~~ 333 (951)
+... +... ......+++.+|++|+++... +.+.+...+.. ....+|. ||.+.. +...
T Consensus 91 ir~~-~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREA-IERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-HHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HHHH-HHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 2222 1111 011123567899999997543 23333333322 2233443 555442 1111
Q ss_pred cCCCccceEEcCCCChhhhHHHHhhhhccCC-----CCChhHHHHHHHHHHHcCCCchHHH
Q 002220 334 FGVCDTDIYEVNKLRFHEALVLFSNFAFKEN-----QCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 334 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
.- ....++.+++++.++..+++.+.+-... ....-..+..+.+++.++|.+-.+.
T Consensus 153 L~-sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 153 LL-SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HH-TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred Hh-CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 10 1126789999999999999988764311 1111123566778888898876544
No 195
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.29 E-value=1.1e-05 Score=88.63 Aligned_cols=197 Identities=14% Similarity=0.056 Sum_probs=103.3
Q ss_pred CCCcccchhhHHHH---HHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 185 SDGFVGLNSRIQKI---KSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 185 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
.+.+||++..++.+ ...+..+....+.+.|+|++|+|||++|+.+++.......... +.+..-.+. .........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA-IAGSEIFSL-EMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE-EEGGGGSCS-SSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccc-ccchhhhhc-ccchhHHHH
Confidence 56899999987764 4444444333468999999999999999999998764322111 111110011 112222222
Q ss_pred HHHHHHhcC---------------------cc------ccCCCCChHHHHHHh---------cCC----cEEEEEeCCCC
Q 002220 262 RVVSEIFQE---------------------DI------KIGTPYLPDYIVERL---------NRM----KVLTVLDDVNK 301 (951)
Q Consensus 262 ~il~~l~~~---------------------~~------~~~~~~~~~~l~~~l---------~~~----~~LlVlDdv~~ 301 (951)
..+...... .. ..........+++.+ .++ +.+|++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222211100 00 000000012222211 123 35999999975
Q ss_pred h--HHHHHHHhccCCCCCCCEEEEEeCC-----------------chhhhhcCCCccceEEcCCCChhhhHHHHhhhhcc
Q 002220 302 V--RQLHYLACVLDQFGPGSRIIITTRD-----------------KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFK 362 (951)
Q Consensus 302 ~--~~~~~l~~~~~~~~~gs~IlvTtR~-----------------~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 362 (951)
. .....+...+...... .++++|.. +.+...+ ..+.+++++.++..+++...+..
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-----~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-----LIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE-----EEEEECCCCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc-----cEEEecCCCHHHHHHHHHHHHHH
Confidence 4 3345555554433333 34444431 1222222 56899999999999999877643
Q ss_pred CCCCChhHHHHHHHHHHHcC-CCchHHHHH
Q 002220 363 ENQCPGDLLALLERVLKYAN-GNPLALRVL 391 (951)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~-g~PLal~~~ 391 (951)
....- -.+..+.+++.+. |.|-.+..+
T Consensus 275 ~~~~~--~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDVEM--SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTCCB--CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCC--CHHHHHHHHHHhcCCCHHHHHHH
Confidence 22211 1245677888887 777654433
No 196
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.28 E-value=4.3e-06 Score=90.65 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=103.9
Q ss_pred CCCCCcccchhhHHHHHHhhccC---CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIG---LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
...+.++|++..++.+..++... ......|.|+|++|+|||++|+.+++.....|-. +.+ .. .....
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---~~~----~~-~~~~~-- 95 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKT---TAA----PM-IEKSG-- 95 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---EEG----GG-CCSHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---ecc----hh-ccchh--
Confidence 34567999999999999888632 3344568999999999999999998876544321 110 00 11111
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHh--cCCcEEEEEeCCCCh--HHHHHHHhccCCC------------------CC
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERL--NRMKVLTVLDDVNKV--RQLHYLACVLDQF------------------GP 317 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~ 317 (951)
.+...+ ..+..+|+||+++.. .....+...+... .+
T Consensus 96 ----------------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 96 ----------------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ----------------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ----------------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 111111 135678999999744 2233333322111 12
Q ss_pred CCEEEEEeCCchhh-hhc--CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 318 GSRIIITTRDKRIL-DDF--GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 318 gs~IlvTtR~~~v~-~~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
+.++|.||...... ... ... ..+.+++++.++..+++.+.+..... .-..+..+.+++.+.|.|-.+..+
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~--~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFG--MQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcC--EEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 35666666543221 111 122 67999999999999999877643221 111255677888899998555443
No 197
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=5.9e-05 Score=83.10 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=79.9
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCc
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLR 819 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~ 819 (951)
+..+.+|+.+.+..+ ........+.++.+|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++. .|.++++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 444556666665432 22223344566667777766543 11122345666777777777543 444433 566777777
Q ss_pred EEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC-ccCCCCCCCCEEEccCCCCcccc-hhhcCC
Q 002220 820 QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP-EDIDCLSSLEVLDLSGSKIEILP-TSIGQL 889 (951)
Q Consensus 820 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l 889 (951)
.+.+.++.... .-..+|.++.+|+.+.|..+ ++.+. ..+.++.+|+++.+..+ ++.+. .++.++
T Consensus 290 ~i~l~~~~i~~----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 290 KVVMDNSAIET----LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp EEEECCTTCCE----ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccce----ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 77776655544 23456777777888777643 55554 34667777877777543 55554 334443
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.26 E-value=1.4e-05 Score=86.74 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=100.7
Q ss_pred CCCCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
..-.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....|-. +. .......
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~---v~-~~~l~~~ 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS---VS-SSDLVSK 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE---EE-HHHHHSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ee-HHHHhhh
Confidence 3446799999999999887631 11223568899999999999999999977543321 11 1100000
Q ss_pred C-CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-------------HHHHHHhccC---CC
Q 002220 253 G-GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-------------QLHYLACVLD---QF 315 (951)
Q Consensus 253 ~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~---~~ 315 (951)
. .......+ ..+......++.+|+||+++... ....+...+. ..
T Consensus 124 ~~g~~~~~~~-------------------~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 124 WMGESEKLVK-------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp C---CHHHHH-------------------HHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred hcchHHHHHH-------------------HHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 0 00000111 11111223467899999996432 1222322221 12
Q ss_pred CCCCEEEEEeCCch-----hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chHHH
Q 002220 316 GPGSRIIITTRDKR-----ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLALR 389 (951)
Q Consensus 316 ~~gs~IlvTtR~~~-----v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~ 389 (951)
..+..||.||.... +.. ... ..+.++..+.++..+++..++........ ......|++.+.|. +-.|.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~--~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~ 258 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFE--RRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIA 258 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCC--EEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccC--EEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 34556666776542 222 333 67889999999999999887643221111 23456777888874 43454
Q ss_pred HHh
Q 002220 390 VLG 392 (951)
Q Consensus 390 ~~~ 392 (951)
.+.
T Consensus 259 ~l~ 261 (355)
T 2qp9_X 259 VVV 261 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.8e-07 Score=91.48 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=28.9
Q ss_pred CCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEc--cCCCCcc-----cchhhcCCCCCCEEeeCCC
Q 002220 843 LSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDL--SGSKIEI-----LPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 843 l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L--~~n~l~~-----l~~~l~~l~~L~~L~L~~~ 900 (951)
.++|+.|+|++|.+.. +...+...++|++|+| ++|.|.. +...+...++|+.|+|++|
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3445555555555543 3334444455555555 4555541 3334444555666665554
No 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.26 E-value=3.3e-05 Score=82.49 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=100.4
Q ss_pred CCCCcccchhhHHHHHHhhcc---------C-CCCcEEEEEEecCCChhHHHHHHHHHHh-hccccceeecccccchhcC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI---------G-LPDFRTIGIWGMGGIGKTTLAGAVFKLI-SREFEGKCFMPNVREESEN 252 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~~ 252 (951)
.-++++|.+..++.|.+.+.. + ....+-|.|+|++|+|||+||+++++.. ...|- .+. ..+....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~---~i~-~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF---SIS-SSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE---EEE-CCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEE---EEE-hHHHHhh
Confidence 346788999888888776531 1 1234678999999999999999999876 32221 111 1000000
Q ss_pred -CCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-------------HHHHHHhccCC---C
Q 002220 253 -GGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-------------QLHYLACVLDQ---F 315 (951)
Q Consensus 253 -~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~---~ 315 (951)
........+.+ +...-..++.+|++|+++... ....+...+.. .
T Consensus 86 ~~g~~~~~~~~l-------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 86 WLGESEKLVKNL-------------------FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SCCSCHHHHHHH-------------------HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred hhhHHHHHHHHH-------------------HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 00111111111 111123567899999997541 12223222221 2
Q ss_pred CCCCEEEEEeCCchhhhh---cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc-hHHHHH
Q 002220 316 GPGSRIIITTRDKRILDD---FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP-LALRVL 391 (951)
Q Consensus 316 ~~gs~IlvTtR~~~v~~~---~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 391 (951)
..+..||.||........ ...+ ..+.++..+.++..+++..+......... ....+.+++.+.|.. -.+..+
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFE--KRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCC--EEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcC--eEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 345556666654422111 1333 67889999999999999887633221111 234567888888764 335554
Q ss_pred h
Q 002220 392 G 392 (951)
Q Consensus 392 ~ 392 (951)
.
T Consensus 223 ~ 223 (322)
T 1xwi_A 223 V 223 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.22 E-value=1.9e-05 Score=85.02 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=102.6
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...++++|.+..++.+.+++..+ ....++.+.|++|+|||++|+.+++.+...| +.+.. + ..+...+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~~----~--~~~~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVNG----S--DCKIDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEET----T--TCCHHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEcc----c--ccCHHHHHH
Confidence 344578999999999999998643 2346788889999999999999998764322 22221 1 222222222
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH---HHHHHHhccCCCCCCCEEEEEeCCch-----hhhh
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR---QLHYLACVLDQFGPGSRIIITTRDKR-----ILDD 333 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IlvTtR~~~-----v~~~ 333 (951)
.+........ ..+++.++|+|+++... ..+.+...+.....+.++|+||.... +...
T Consensus 92 -~~~~~~~~~~--------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 -PLTNFASAAS--------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp -HHHHHHHBCC--------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred -HHHHHHhhcc--------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 2222111100 12367899999998654 34445444433345678888887653 2222
Q ss_pred cCCCccceEEcCCCChhhhHHHHh-------hhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 334 FGVCDTDIYEVNKLRFHEALVLFS-------NFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 334 ~~~~~~~~~~l~~L~~~~a~~Lf~-------~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
+ ..+++++++.++-.+++. ..+.......++ .+..+.+++.++|.+-.
T Consensus 157 ~-----~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 157 C-----RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp S-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred C-----cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 2 579999999888544332 222111111111 14566778888887654
No 202
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.22 E-value=1.3e-05 Score=86.07 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCCcc-cchhh--HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 185 SDGFV-GLNSR--IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 185 ~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
.++|| |.... ...+..+..........+.|+|++|+||||||+.+++.....-...+++.. ..+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-----------~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-----------DDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-----------HHHHH
Confidence 45565 54433 334445443332245678999999999999999999876443222334321 11222
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH----HHHHHHhccCC-CCCCCEEEEEeCCch-------
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR----QLHYLACVLDQ-FGPGSRIIITTRDKR------- 329 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~~------- 329 (951)
.+...+... ....+.+... +..+|++||++... ..+.+...+.. ...|..||+||....
T Consensus 79 ~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 79 AMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 233322211 1123333333 36789999996432 12223222211 134667888876431
Q ss_pred --hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 330 --ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 330 --v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
+...+... .++++++ +.++..+++...+......-+ .+..+.+++.+ |..-
T Consensus 150 ~~L~sR~~~~--~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 150 DRLVSRFEGG--ILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHTS--EEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred hHhhhcccCc--eEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 22222222 5689999 999999999887743222111 24566777778 7654
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.19 E-value=3.1e-05 Score=85.44 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=100.0
Q ss_pred CCCCCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE 251 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (951)
+....+++|.+..++.|.+.+.. .....+-|.|+|.+|+|||++|+.++++....| +.+. ......
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhhc
Confidence 34456799999999999887731 012246789999999999999999998754333 1121 111000
Q ss_pred CC-CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------------HHHHHHHhccC----
Q 002220 252 NG-GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------------RQLHYLACVLD---- 313 (951)
Q Consensus 252 ~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~---- 313 (951)
.. ........ ..+...-...+.+|+||+++.. .....+...+.
T Consensus 187 ~~~g~~~~~~~-------------------~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 187 KYVGEGEKLVR-------------------ALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp -----CHHHHH-------------------HHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred cccchHHHHHH-------------------HHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 00 00001111 1111122345679999999643 01122222111
Q ss_pred CCCCCCEEEEEeCCchhhhh---cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch-HHH
Q 002220 314 QFGPGSRIIITTRDKRILDD---FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL-ALR 389 (951)
Q Consensus 314 ~~~~gs~IlvTtR~~~v~~~---~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~ 389 (951)
.......||.||........ .... ..+.+...+.++..+++...+........ .+....+++.+.|..- ++.
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~--~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFI--KRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcc--eEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 11234556666654322111 1222 46889999999999999877643222111 2356778888888644 554
Q ss_pred HHh
Q 002220 390 VLG 392 (951)
Q Consensus 390 ~~~ 392 (951)
.+.
T Consensus 324 ~L~ 326 (389)
T 3vfd_A 324 ALA 326 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.14 E-value=4.5e-05 Score=85.39 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=103.5
Q ss_pred CCCCCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHh-hccccceeecccccchh
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLI-SREFEGKCFMPNVREES 250 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~ 250 (951)
+..-++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.. ...| +.+. .
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v~-~---- 201 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-S---- 201 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEEC-C----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEEe-H----
Confidence 34456799999999999877631 11234688999999999999999999876 2221 1111 1
Q ss_pred cCCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCCh-------------HHHHHHHhccCC--
Q 002220 251 ENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKV-------------RQLHYLACVLDQ-- 314 (951)
Q Consensus 251 ~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~-- 314 (951)
..+ . ....+ ...... ..+...-..++.+|+||+++.. .....+...+..
T Consensus 202 ---~~l---~----~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 202 ---SDL---V----SKWLG-----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp ---C---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred ---HHH---H----hhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 000 0 00000 011112 2222223456789999999754 113334444332
Q ss_pred -CCCCCEEEEEeCCchhhhh---cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chHHH
Q 002220 315 -FGPGSRIIITTRDKRILDD---FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLALR 389 (951)
Q Consensus 315 -~~~gs~IlvTtR~~~v~~~---~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~ 389 (951)
...+..||.||........ ...+ ..+.++..+.++..++|..++........ ......|++.+.|. +-.|.
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~ 342 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFE--KRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADIS 342 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCC--EEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcc--eEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 2345667777765432111 1233 57888888999989998887633221111 23456777888874 43444
Q ss_pred HHh
Q 002220 390 VLG 392 (951)
Q Consensus 390 ~~~ 392 (951)
.+.
T Consensus 343 ~l~ 345 (444)
T 2zan_A 343 IIV 345 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=3.4e-07 Score=89.45 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=50.6
Q ss_pred cccCCCCcEEEcccCCCcc-----cCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEec--cCCCCCC---
Q 002220 789 LEKMELLETLDLERTGVKE-----LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQL--SGCEIKE--- 858 (951)
Q Consensus 789 l~~l~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L--~~~~l~~--- 858 (951)
+...++|++|+|++|.+.. +...+...++|++|+|++|.+.......+...+...++|+.|+| ++|.+..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3344445555555555441 22233444556666665555443211123344555667777777 6677763
Q ss_pred --cCccCCCCCCCCEEEccCCCCc
Q 002220 859 --IPEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 859 --l~~~l~~l~~L~~L~L~~n~l~ 880 (951)
+...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445555677888888888765
No 206
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=1.7e-05 Score=77.39 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=41.6
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998854 33456789999999999999999987644
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.03 E-value=3.7e-05 Score=81.39 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=89.5
Q ss_pred CCCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
.-++++|.+..+++|.+.+.. +-...+.|.|+|++|+|||+||+.+++.....| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 345689999988888877642 123456789999999999999999998764332 1121
Q ss_pred CCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCC-
Q 002220 253 GGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQ- 314 (951)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~- 314 (951)
...+ .....+.. .... ..+.......+.++++|+++... ....+...+..
T Consensus 82 ---~~~l----~~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ---GPEL----LTMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ---HHHH----HHHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ---hHHH----HhhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 0111 11111110 1111 23333334567899999997421 12333332221
Q ss_pred -CCCCCEEEEEeCCchhhhh--c---CCCccceEEcCCCChhhhHHHHhhhh
Q 002220 315 -FGPGSRIIITTRDKRILDD--F---GVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 315 -~~~gs~IlvTtR~~~v~~~--~---~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
...+..||.||........ . ... ..+.++..+.++-.+++..+.
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~--~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLD--QLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccc--eEEecCCcCHHHHHHHHHHHH
Confidence 1235667777765533211 1 233 578999999999889887765
No 208
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.96 E-value=0.00016 Score=77.74 Aligned_cols=182 Identities=15% Similarity=0.113 Sum_probs=100.2
Q ss_pred hhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcC-
Q 002220 192 NSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQE- 270 (951)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~- 270 (951)
+...+.+...+..+ .-.+.+.++|++|+|||++|+.+++.+....... ... .+.-.....+.......
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~---------c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS---------CGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC---------CSCSHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC---------CCCCHHHHHHhcCCCCCE
Confidence 34455666666432 2346789999999999999999998764322100 000 00000000000000000
Q ss_pred ---ccccCCCCCh-HHHH---HHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCch-hhhhcC
Q 002220 271 ---DIKIGTPYLP-DYIV---ERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKR-ILDDFG 335 (951)
Q Consensus 271 ---~~~~~~~~~~-~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~~~ 335 (951)
.......... +.++ +.+ .+++-++|+|+++.. ...+.+...+....+++.+|++|.+.. +.....
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 0000000000 2122 121 245778999999753 345666666655556677777776653 322221
Q ss_pred CCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 336 VCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 336 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
. ....+++++++.++..+.+.... .. . .+.+..+++.++|.|..+..+.
T Consensus 157 S-Rc~~~~~~~~~~~~~~~~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 157 S-RCRLHYLAPPPEQYAVTWLSREV---TM-S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp T-TSEEEECCCCCHHHHHHHHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred h-cceeeeCCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 12689999999999999998775 11 1 1445778899999997665544
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=0.00013 Score=78.80 Aligned_cols=182 Identities=15% Similarity=0.198 Sum_probs=102.5
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecccccchhcCCCChHHHHHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
.-..++|.+..++.|...+..+. ...+.++|++|+||||+|+.++..+... +...+.-.+. +. ..+...+.+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~-~~~~~~ir~- 95 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SD-DRGIDVVRN- 95 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TS-CCSHHHHHT-
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cc-cccHHHHHH-
Confidence 34568899988899988886442 2238999999999999999999865322 2111110000 11 122222222
Q ss_pred HHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEeCCch-hhhhcCCCcc
Q 002220 263 VVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITTRDKR-ILDDFGVCDT 339 (951)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~~~~~~~ 339 (951)
.+......... ..+.+-++|+|+++. ....+.+...+......+++|++|.... +...... ..
T Consensus 96 ~i~~~~~~~~~-------------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s-R~ 161 (340)
T 1sxj_C 96 QIKDFASTRQI-------------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS-QC 161 (340)
T ss_dssp HHHHHHHBCCS-------------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT-TS
T ss_pred HHHHHHhhccc-------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh-hc
Confidence 22222111000 112467899999863 3334445444433345667777765442 2111100 11
Q ss_pred ceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 340 DIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 340 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
..+.+.+++.++..+.+...+-.....-+ .+..+.+++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 57899999999999888776522221111 245677888889987643
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00011 Score=79.02 Aligned_cols=173 Identities=21% Similarity=0.211 Sum_probs=100.4
Q ss_pred CCCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
.-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|-.+-. .+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~----s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG----AELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG----GGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh----HHhhcc
Confidence 346788999999988876541 22345778999999999999999999987666532211 111100
Q ss_pred CCC-hHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCCC
Q 002220 253 GGG-LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQF 315 (951)
Q Consensus 253 ~~~-~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 315 (951)
..+ .....+.++. ..-...+++|.+|+++... .+..++..+..+
T Consensus 222 ~vGese~~vr~lF~-------------------~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 222 YIGEGSRMVRELFV-------------------MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp STTHHHHHHHHHHH-------------------HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHH-------------------HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 111 1111222221 1123468899999986321 122333333222
Q ss_pred --CCCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 316 --GPGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 --~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
..+..||.||...+.... ...+ ..+.++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRID--RKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSC--CEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCc--eEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 334556777765543221 1344 789999999999999998776332211 122 345667777754
No 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=6e-06 Score=78.21 Aligned_cols=86 Identities=15% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCC-CCC-cCccCCCC----CCCCEEEccCC-CCcccc-hhhc
Q 002220 816 QGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCE-IKE-IPEDIDCL----SSLEVLDLSGS-KIEILP-TSIG 887 (951)
Q Consensus 816 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-l~~~l~~l----~~L~~L~L~~n-~l~~l~-~~l~ 887 (951)
.+|+.|++++|.++. .+ + ..+.++++|+.|+|++|. +++ --..+..+ ++|++|+|++| +|+.-- ..+.
T Consensus 61 ~~L~~LDLs~~~Itd-~G--L-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-IG--F-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCG-GG--G-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccH-HH--H-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 356666666665332 11 1 224556666666666664 442 11112221 35666666666 455211 3455
Q ss_pred CCCCCCEEeeCCCCCCCc
Q 002220 888 QLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 888 ~l~~L~~L~L~~~~~l~~ 905 (951)
.+++|+.|+|++|+.++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 666666666666666554
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.92 E-value=1.2e-05 Score=74.78 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 187 GFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+++|++..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999888775322233457899999999999999998743
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.85 E-value=7.6e-05 Score=79.68 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHhhccC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 186 DGFVGLNSRIQKIKSLLCIG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789999888888777532 112358999999999999999999987643
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00035 Score=76.61 Aligned_cols=172 Identities=22% Similarity=0.247 Sum_probs=99.2
Q ss_pred CCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 185 SDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|-.+- ..+.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~----~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP----ASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE----GGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe----hhhhcccc
Confidence 45788999999888776541 2244678999999999999999999998765543221 11111101
Q ss_pred CC-hHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCCC-
Q 002220 254 GG-LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQF- 315 (951)
Q Consensus 254 ~~-~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 315 (951)
.+ .....+.++ ...-...+++|.+|+++... .+..++..+..+
T Consensus 256 ~Gese~~ir~~F-------------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIREMF-------------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHH-------------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 11 111111111 11223568999999986320 122333333222
Q ss_pred -CCCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 002220 316 -GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQ-CPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 -~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 385 (951)
..+..||.||...+..... ..+ ..+.++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLD--RKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEE--EEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccc--eeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 2455677788665443221 133 57889888888888888877643221 1122 345666777754
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.80 E-value=0.00014 Score=81.95 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc------cceeecccccchhcCCCCh
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF------EGKCFMPNVREESENGGGL 256 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 256 (951)
...+.+|||+.+++.+...+... ...-+.|+|.+|+|||++|+.+++.+...+ ...++..+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 34467999999999999998642 234567999999999999999999764432 1111111110
Q ss_pred HHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcC
Q 002220 257 VYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFG 335 (951)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~ 335 (951)
... .+ ...... ..+...-..++.++++| ...+....+...+. ....++|.+|..........
T Consensus 246 --------~~~----~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 --------TKY----RG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp --------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred --------ccc----cc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhh
Confidence 000 00 000111 22333333567889999 22222222333332 22355666655443111100
Q ss_pred C-----CccceEEcCCCChhhhHHHHhhhh
Q 002220 336 V-----CDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 336 ~-----~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
. .....+.++..+.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 011569999999999999998655
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00044 Score=75.48 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=98.5
Q ss_pred CCCcccchhhHHHHHHhhc-----------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 185 SDGFVGLNSRIQKIKSLLC-----------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
-.++.|.++.+++|.+.+. .+-...+-|.++|++|+|||.||+++++.....|-.+-.- +.....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s----~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS----ELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG----GGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH----Hhhccc
Confidence 3578999999999887653 1224567899999999999999999999876655322111 111101
Q ss_pred CC-hHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCCC-
Q 002220 254 GG-LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQF- 315 (951)
Q Consensus 254 ~~-~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 315 (951)
.+ .....+.++ ...-...+++|++|+++... ....++..+...
T Consensus 284 vGesek~ir~lF-------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 284 VGEGARMVRELF-------------------EMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SSHHHHHHHHHH-------------------HHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHH-------------------HHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 11 111112221 11223568999999985321 112222222222
Q ss_pred -CCCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 316 -GPGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 -~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
..+..||.||...+.... ...+ ..++++..+.++-.++|..+.-+.... .-+ .+.+++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD--~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRID--RKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCC--EEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhcccccc--EEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 234455667754433221 1345 789999999999999998776332211 112 345666777753
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.78 E-value=6.6e-05 Score=79.41 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999888775322334567899999999999999998853
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.77 E-value=5.8e-05 Score=78.60 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=84.8
Q ss_pred CCCCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
....+++|.+..++.+.+.+.. +....+-+.|+|++|+|||++|+.+++.....|- .+. ......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~- 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF---SMG-GSSFIE- 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC---CCC-SCTTTT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---Eec-hHHHHH-
Confidence 3456799999988888876541 1112334789999999999999999987654332 111 000000
Q ss_pred CCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChHH-----------------HHHHHhccCCC
Q 002220 253 GGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQ-----------------LHYLACVLDQF 315 (951)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~l~~~~~~~ 315 (951)
. ..+ .........+......++.+|++|+++.... +..+...+...
T Consensus 83 ~-------------~~~----~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 83 M-------------FVG----LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp S-------------CSS----SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred h-------------hcc----hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0 000 0001111333333345678999999954311 22222222211
Q ss_pred ---CCCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 316 ---GPGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 316 ---~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
.....||.||........ .... ..+.++..+.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~--~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFD--RQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSC--CCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCC--eEEEecCcCHHHHHHHHHHHH
Confidence 122456677765532211 1122 567888888888888887665
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00021 Score=78.34 Aligned_cols=174 Identities=14% Similarity=0.130 Sum_probs=99.0
Q ss_pred CCCCCcccchhhHHHHHHhhc-----------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLC-----------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE 251 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (951)
..-+++.|.++.+++|.+.+. .+-...+-|.++|++|.|||.||+++++.....|-.+-. .+...
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~----s~l~~ 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA----PQLVQ 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG----GGGCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh----hhhhh
Confidence 334678999999998887643 122446789999999999999999999987655432211 11111
Q ss_pred CCCC-hHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------H---------HHHHHHhccCC
Q 002220 252 NGGG-LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------R---------QLHYLACVLDQ 314 (951)
Q Consensus 252 ~~~~-~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------~---------~~~~l~~~~~~ 314 (951)
...+ .....+.++.. .-...+++|.+|+++.. . .+..++..+..
T Consensus 254 ~~vGese~~ir~lF~~-------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFAL-------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp SCSSHHHHHHHHHHHH-------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHH-------------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 0111 11122222211 11235789999998421 0 12234444433
Q ss_pred CC--CCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 315 FG--PGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 315 ~~--~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
+. .+..||.||...+..... ..+ ..+.++..+.++-.++|..+.-+.... .-+ .+.+++.+.|.-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD--~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLD--RKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEE--EEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCcee--EEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 22 344566677665443221 233 678999999998889887665332211 112 345666777653
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.76 E-value=5.2e-05 Score=78.77 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.6
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999998888776642222235678999999999999999998543
No 221
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.75 E-value=0.00013 Score=70.64 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=23.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...++|+|++|+||||||+.+++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00034 Score=72.17 Aligned_cols=55 Identities=20% Similarity=0.097 Sum_probs=39.1
Q ss_pred CCCCCCcccchhhHHHHHHhhc---cC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLC---IG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+...++++|.+..++++.+.+. .. ....+-+.|+|++|+||||+|+.+++.....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 3445678999988877766542 10 1123458899999999999999999876433
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.74 E-value=0.00015 Score=81.61 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=98.4
Q ss_pred CCCcccchhhHHHHHHhhccC-----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG-----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
...++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+++++.....| +.+. ........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhhhhh
Confidence 356899999999998877521 23456789999999999999999998764332 1221 11111100
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------------HHHHHHHhccCC--CCCC
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------------RQLHYLACVLDQ--FGPG 318 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~g 318 (951)
.+ .....+ ...+.....+++.+|+||+++.. .....+...+.. ...+
T Consensus 279 ~g--~~~~~~----------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 AG--ESESNL----------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp TT--HHHHHH----------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred cc--hhHHHH----------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 10 000000 02233333456789999998311 112223322221 1334
Q ss_pred CEEEEEeCCchh-----hhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHH
Q 002220 319 SRIIITTRDKRI-----LDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLALRVL 391 (951)
Q Consensus 319 s~IlvTtR~~~v-----~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 391 (951)
.+||.||..... ....... ..+.++..+.++-.+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~--~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFD--REVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCc--eEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 566667765532 1111233 57899999999999999887643221111 1124455566664 3334433
No 224
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=2.1e-05 Score=74.45 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=51.9
Q ss_pred ccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCcc-chhcccC----CCCcEEEcccCC-Cccc-
Q 002220 736 EVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGF-PEILEKM----ELLETLDLERTG-VKEL- 808 (951)
Q Consensus 736 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l----~~L~~L~l~~n~-i~~l- 808 (951)
.+|.....-.+|+.||+++|.++..--..+.++++|++|+|++|..+++. ...+..+ ++|++|+|++|. ++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34443333356888888888765555555677788888888887655442 1223332 245566665543 4310
Q ss_pred CccccCCCCCcEEeeccCCCCc
Q 002220 809 PPSFENLQGLRQLSLIGCSELK 830 (951)
Q Consensus 809 ~~~~~~l~~L~~L~l~~~~~~~ 830 (951)
-..+..+++|++|++++|...+
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 1123445555555555555443
No 225
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=5.5e-06 Score=84.89 Aligned_cols=55 Identities=31% Similarity=0.405 Sum_probs=25.4
Q ss_pred CCCCCCCEEeccCCCCCCcC--ccCCCCCCCCEEEccCCCCc-ccc-------hhhcCCCCCCEEe
Q 002220 841 SKLSSLERLQLSGCEIKEIP--EDIDCLSSLEVLDLSGSKIE-ILP-------TSIGQLSRLRQLN 896 (951)
Q Consensus 841 ~~l~~L~~L~L~~~~l~~l~--~~l~~l~~L~~L~L~~n~l~-~l~-------~~l~~l~~L~~L~ 896 (951)
..+++|+.|+|++|.+..+. ..+..+ +|++|+|++|.+. .+| ..+..+|+|+.|+
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 34444555555555444431 111222 5566666666554 222 2245566666654
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00024 Score=77.73 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 35788999999888876531 234467799999999999999999999876554
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=0.0001 Score=72.88 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=39.5
Q ss_pred CCCCcccchh----hHHHHHHhhccCCC--CcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 184 YSDGFVGLNS----RIQKIKSLLCIGLP--DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 184 ~~~~~vGr~~----~~~~l~~~L~~~~~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
..++|++.+. .++.+.+++..... ..+.+.|+|.+|+|||+||+.+++........++|+
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3456776553 33444555543222 126889999999999999999999776554445554
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00036 Score=75.38 Aligned_cols=172 Identities=20% Similarity=0.203 Sum_probs=97.3
Q ss_pred CCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 185 SDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|-.+.- .+.....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~----s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG----SELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES----GGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH----HHhhhcc
Confidence 35678999999888876531 22345789999999999999999999987665532211 1111101
Q ss_pred CC-hHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------------H---HHHHHHhccCCC-
Q 002220 254 GG-LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------------R---QLHYLACVLDQF- 315 (951)
Q Consensus 254 ~~-~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~~- 315 (951)
.+ .....+.++.. .-...+++|.+|+++.. . .+..++..+...
T Consensus 257 vGesek~ir~lF~~-------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 257 LGDGPRLCRQIFKV-------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SSHHHHHHHHHHHH-------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHHH-------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 11 11222222211 12346789999987522 0 122233222221
Q ss_pred -CCCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 316 -GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 -~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
..+..||.||...+..... ..+ ..+.++..+.++-.++|..+.-+.... ..+ .+.+++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD--~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRID--RKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEE--EEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCcee--EEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2345667777655543321 122 568888888888889998776332211 112 345566676653
No 229
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.64 E-value=0.00021 Score=87.14 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=41.6
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+.+|||+.++..+...+.... ..-+.|+|.+|+||||+|+.+++.+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999886432 345789999999999999999997643
No 230
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.63 E-value=0.00018 Score=76.75 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHhhcc------------CCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 186 DGFVGLNSRIQKIKSLLCI------------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4588999988888877643 0122456889999999999999999987643
No 231
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.55 E-value=0.0011 Score=73.80 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=95.8
Q ss_pred CCCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
...+++|.+..++++.+.... +..-.+-|.|+|++|+|||+||+.++.+....|- .+. ..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~---~is-~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF---HIS-GSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE---EEE-GGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee---eCC-HHHHHHHH
Confidence 345689999888777765431 1112345889999999999999999987644332 111 11111101
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh----------------HHHHHHHhccCCC--
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV----------------RQLHYLACVLDQF-- 315 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 315 (951)
.+... .. . ...+.......+.+|+||+++.. ..+..+...+..+
T Consensus 90 ~g~~~--~~-~---------------r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 90 VGVGA--AR-V---------------RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTHHH--HH-H---------------HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred hcccH--HH-H---------------HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 11100 00 0 02233334457889999998532 1123333322211
Q ss_pred CCCCEEEEEeCCchhhhh--c---CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc
Q 002220 316 GPGSRIIITTRDKRILDD--F---GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 ~~gs~IlvTtR~~~v~~~--~---~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 385 (951)
..+..||.||...+.... . ..+ ..+.++..+.++-.+++..++-......+. ....+++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd--~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFD--KKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSC--EEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcce--eEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 245667777776644321 1 233 478899888888888887665332211111 1344677787876
No 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.0011 Score=79.95 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=86.2
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc------cceeecccccchhc---CC
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF------EGKCFMPNVREESE---NG 253 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~---~~ 253 (951)
...+.++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++.+.... ...+|..+...... ..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 260 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccccc
Confidence 34467999999999999998643 334578999999999999999998764321 22222211111000 00
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh----------HHHHHHHhccCCCCCCCEEEE
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV----------RQLHYLACVLDQFGPGSRIII 323 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~Ilv 323 (951)
.......+ ..+...-..++.+|++|+++.. .+...+...+.. ..+.++|.
T Consensus 261 g~~e~~l~-------------------~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~ 320 (758)
T 1r6b_X 261 GDFEKRFK-------------------ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIG 320 (758)
T ss_dssp SCHHHHHH-------------------HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEE
T ss_pred chHHHHHH-------------------HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEE
Confidence 00111111 1111111235689999999754 112222322222 23456666
Q ss_pred EeCCchhhhhcC-----CCccceEEcCCCChhhhHHHHhhhh
Q 002220 324 TTRDKRILDDFG-----VCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 324 TtR~~~v~~~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
+|.......... ......+.++..+.++..+++....
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 665443211110 0111468999999999988887644
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.00055 Score=82.48 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=82.9
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc------cceeecccccchhcCCCCh
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF------EGKCFMPNVREESENGGGL 256 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 256 (951)
...+.+|||+.+++.+...+... ...-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 34467999999999999998642 233478999999999999999999763321 111111100
Q ss_pred HHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcC
Q 002220 257 VYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFG 335 (951)
Q Consensus 257 ~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~ 335 (951)
+........... ..+......++.+|++| ...+....+...+. ....++|.||..........
T Consensus 245 ------------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 ------------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp --------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred ------------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 000000011111 33333334677899999 22222223333332 23456666665444211100
Q ss_pred CC-----ccceEEcCCCChhhhHHHHhhhh
Q 002220 336 VC-----DTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 336 ~~-----~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
.+ ....+.++..+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 00 11569999999999999998654
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.49 E-value=5e-05 Score=70.36 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=33.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 358899999988888765211223457899999999999999987643
No 235
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=9.3e-05 Score=75.75 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=52.3
Q ss_pred CCCCCCCEEeccCCCCCCcC---ccCCCCCCCCEEEccCCCCcccchhhcCCC--CCCEEeeCCCCCCCcCCC
Q 002220 841 SKLSSLERLQLSGCEIKEIP---EDIDCLSSLEVLDLSGSKIEILPTSIGQLS--RLRQLNLLDCNMLQSIPE 908 (951)
Q Consensus 841 ~~l~~L~~L~L~~~~l~~l~---~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~--~L~~L~L~~~~~l~~lp~ 908 (951)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|+|+.+. .+..+. +|+.|+|++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCc
Confidence 35677888888888887643 55568999999999999999774 344444 999999999997776663
No 236
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00089 Score=70.40 Aligned_cols=146 Identities=11% Similarity=0.036 Sum_probs=87.2
Q ss_pred cchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh---ccccceeecccccchhcCCCChHHHHHHHHHH
Q 002220 190 GLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS---REFEGKCFMPNVREESENGGGLVYLRDRVVSE 266 (951)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 266 (951)
|-++.++.|...+..+. .....++|++|+||||+|+.+++... ..+....++... ....++..+. .+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~ir-~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIR-TIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHHH-HHHHH
Confidence 34556677777775443 67899999999999999999987531 112223333210 0022333332 23333
Q ss_pred HhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCccceEE
Q 002220 267 IFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDTDIYE 343 (951)
Q Consensus 267 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~~ 343 (951)
..... ..+++-++|+|+++.. ...+.++..+....+.+.+|++|.+. .+...... +.++
T Consensus 74 ~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S---R~~~ 135 (305)
T 2gno_A 74 LNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS---RVFR 135 (305)
T ss_dssp HTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT---TSEE
T ss_pred Hhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc---eeEe
Confidence 32110 0235678899999643 44566665555445677777776544 34333222 2799
Q ss_pred cCCCChhhhHHHHhhhh
Q 002220 344 VNKLRFHEALVLFSNFA 360 (951)
Q Consensus 344 l~~L~~~~a~~Lf~~~~ 360 (951)
++++++++..+.+.+.+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999988775
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.002 Score=72.35 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHHhh---ccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 185 SDGFVGLNSRIQKIKSLL---CIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+.++|.+..++.+..++ ..+....+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999999887665544 33333346788999999999999999998764
No 238
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.41 E-value=0.0011 Score=71.01 Aligned_cols=172 Identities=18% Similarity=0.144 Sum_probs=93.4
Q ss_pred CCCCcccchhhHHHHHHhhccC---CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIG---LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
.-+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|... . ... ......+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~---s--g~~---~~~~~~l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT---S--GPV---LVKQGDMA 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE---E--TTT---CCSHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE---e--chH---hcCHHHHH
Confidence 3456889888888777666432 22346789999999999999999999764433211 0 000 00001110
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCC--------C----------CCCE
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQF--------G----------PGSR 320 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~gs~ 320 (951)
. +...+ .++-++++|++... ...+.+....... + +...
T Consensus 95 -~--------------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 -A--------------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -H--------------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -H--------------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0 01111 13446778887532 2233332211110 0 1122
Q ss_pred EE-EEeCCchhhhhc--CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 321 II-ITTRDKRILDDF--GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 321 Il-vTtR~~~v~~~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
++ .|++...+.... .+. ....+++.+.++..+++.+.+-..... ...+.+..|++.+.|.|-.+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~--l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFG--IILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCS--EEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHH
T ss_pred EEEecCCcccCCHHHHHhcC--ceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHH
Confidence 33 344433321111 121 358899999999999998876322211 123567889999999996543
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00061 Score=82.09 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=82.0
Q ss_pred CCcccchhhHHHHHHhhccCC-------CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGL-------PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. ..+... .....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~-~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYME-KHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCS-SCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhccc-ccccc-
Confidence 468999999988887775211 12347999999999999999999987633222233332 111111 11000
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCC-----------CCCCCEEEEEe
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQ-----------FGPGSRIIITT 325 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~-----------~~~gs~IlvTt 325 (951)
.....+.+++ ...-+|+||+++... ....+...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0000122221 233488999996442 23334333221 12456888888
Q ss_pred CCc-----------------hhhhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 326 RDK-----------------RILDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 326 R~~-----------------~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
... .+.. ..+ .++.+.+++.++..+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~--~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RID--EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSS--EEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCC--eEEecCCCCHHHHHHHHHHHH
Confidence 731 1112 222 578899999888887776544
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.25 E-value=0.0025 Score=73.08 Aligned_cols=52 Identities=27% Similarity=0.334 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHhhc----cCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 187 GFVGLNSRIQKIKSLLC----IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
+++|.+...+.+.+.+. ........+.++|++|+||||||+.++......|-
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 37888877777655432 11224568999999999999999999987755443
No 241
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.22 E-value=0.00041 Score=59.62 Aligned_cols=73 Identities=4% Similarity=0.010 Sum_probs=53.4
Q ss_pred CcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhHHHHHH
Q 002220 9 CKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCLDELVK 88 (951)
Q Consensus 9 ~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~~el~~ 88 (951)
.+|.+||||+.+| . .+.|...|.+.|+. |.| +.|+.|..+||+.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 5799999999988 2 44455555455552 222 67889999999999999999999999976
Q ss_pred HHHhhhcCCCeEEEEEe
Q 002220 89 ILDCKNLNGQMVVPVFY 105 (951)
Q Consensus 89 ~~~~~~~~~~~~~pv~~ 105 (951)
|. +.+..++-|..
T Consensus 63 A~----~~gkpIigV~~ 75 (111)
T 1eiw_A 63 AR----KSSKPIITVRP 75 (111)
T ss_dssp HT----TTTCCEEEECC
T ss_pred HH----HcCCCEEEEEc
Confidence 65 34455666653
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.00098 Score=78.76 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=95.5
Q ss_pred CCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCC
Q 002220 186 DGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGG 254 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (951)
+++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||++++++....|- .+....-.+. ..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~---~v~~~~l~sk-~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF---LINGPEIMSK-LA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEE---EEEHHHHHSS-CT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEE---EEEhHHhhcc-cc
Confidence 5678999999888876531 1134678999999999999999999987654431 2211110111 11
Q ss_pred C-hHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-------------HHHHHHhccCCC--CCC
Q 002220 255 G-LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-------------QLHYLACVLDQF--GPG 318 (951)
Q Consensus 255 ~-~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~g 318 (951)
+ .....+ +......+..+.+|++|+++... ....++..+... ..+
T Consensus 280 gese~~lr-------------------~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESESNLR-------------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHHHHHH-------------------HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHHHHHH-------------------HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1 111111 11222234568899999985321 122232222111 234
Q ss_pred CEEEEEeCCchhhhh-c----CCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 319 SRIIITTRDKRILDD-F----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 319 s~IlvTtR~~~v~~~-~----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
..||.||...+.... . ..+ ..++++..+.++-.++|..+.-+.... ..+ ...+++.+.|..
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd--~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFD--REVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSC--EEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccc--eEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 445666655433211 1 233 679999999999999998776332111 112 345677777764
No 243
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.21 E-value=0.0034 Score=67.30 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=39.9
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
.+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++.....|
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 357899999998888777543 3588999999999999999998765544
No 244
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.00086 Score=62.25 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
....++|+|..|.|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999986654
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.11 E-value=0.0039 Score=64.53 Aligned_cols=151 Identities=17% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCC
Q 002220 186 DGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGG 254 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (951)
.++.|.++.+++|.+.+.. +-.-.+-++|+|++|.||||||+.++...... .+++... +... .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~-~l~~--~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVKGP-ELLN--M 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEETT-TTCS--S
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcH-HHHh--h
Confidence 4566777766666654320 10111229999999999999999999865442 2233211 1100 0
Q ss_pred ChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-------------HHHHHHhccCCC--CCCC
Q 002220 255 GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-------------QLHYLACVLDQF--GPGS 319 (951)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs 319 (951)
......+. +..+ ....-...+.++++|+++... ....+...+... ....
T Consensus 84 ~~~~~~~~-i~~v---------------f~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 YVGESERA-VRQV---------------FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp TTHHHHHH-HHHH---------------HHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hhhHHHHH-HHHH---------------HHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 11111111 1111 111112356788999986421 112222222211 2234
Q ss_pred EEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhh
Q 002220 320 RIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 320 ~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
-++.+|..+++.... ..+ ..+.++..+.++-.+++..+.
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd--~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLD--KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSC--EEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCC--eEEEeCCcCHHHHHHHHHHHH
Confidence 566677766554322 344 678899999999888887765
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.10 E-value=0.0057 Score=62.69 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=34.8
Q ss_pred CCCCcccchhhHHHHHHhhcc--C--------CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI--G--------LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..++++|.+..+.++.++... . -.-.+-+.|+|++|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678888776666554321 0 01112389999999999999999998664
No 247
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.07 E-value=0.0024 Score=66.98 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=25.2
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+.+.++|++|+|||+||+.+++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345688899999999999999999977443
No 248
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00018 Score=69.41 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=46.3
Q ss_pred ccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEccCC---CCc---
Q 002220 812 FENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDLSGS---KIE--- 880 (951)
Q Consensus 812 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~~n---~l~--- 880 (951)
+..-+.|+.|+|++|.+.......+...+..-..|+.|+|++|.|.. +.+.+..-++|++|+|++| .+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 34444555555555544332111122233344566666666666663 4445555566777777654 233
Q ss_pred --ccchhhcCCCCCCEEeeCCC
Q 002220 881 --ILPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 881 --~l~~~l~~l~~L~~L~L~~~ 900 (951)
.+...+..-++|+.|+++.|
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 23344556667777777643
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.04 E-value=0.0094 Score=61.97 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCCCCcccchhhHHHHHHhhcc--C--------CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCI--G--------LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...++++|.+..++++.++... . -.-.+-+.|+|++|+||||||+.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 3445788888777766654321 0 01112389999999999999999998764
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.95 E-value=0.0012 Score=69.75 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHhhccCCC-CcEEEEEEecCCChhHHHHHHHHHHhh-ccccceeec
Q 002220 195 IQKIKSLLCIGLP-DFRTIGIWGMGGIGKTTLAGAVFKLIS-REFEGKCFM 243 (951)
Q Consensus 195 ~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 243 (951)
++.+.+++..... ....+.|+|.+|+|||+||.++++... .....+.++
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3444455543222 246788999999999999999999765 443334444
No 251
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.86 E-value=0.014 Score=65.47 Aligned_cols=173 Identities=16% Similarity=0.122 Sum_probs=91.9
Q ss_pred CCCCCCcccchhhHHHHHHhhc---cC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLC---IG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE 251 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (951)
....++++|.+..+.++.+... .. -.-.+-+.|+|++|+||||||+.++......| +.+.. .....
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i~g-~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITASG-SDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEEEG-GGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEEeh-hHHHH
Confidence 3445679999988777766542 10 01123489999999999999999998764322 22221 11111
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc----CCcEEEEEeCCCCh------------H----HHHHHHhc
Q 002220 252 NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN----RMKVLTVLDDVNKV------------R----QLHYLACV 311 (951)
Q Consensus 252 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~------------~----~~~~l~~~ 311 (951)
...+. .. ..++..++ ..+.++++|+++.. . .+..+...
T Consensus 103 ~~~g~--~~--------------------~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 103 MFVGV--GA--------------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160 (499)
T ss_dssp SCTTH--HH--------------------HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH
T ss_pred hhhhh--HH--------------------HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH
Confidence 00110 00 11222221 23578999998421 1 12334333
Q ss_pred cCCC--CCCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 312 LDQF--GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 312 ~~~~--~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
+..+ ..+..|+.||..++..... ..+ ..+.++..+.++-.+++..++-+.....+. ....++..+.|.
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfd--r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~ 235 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFD--RQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGF 235 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSC--CEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSC
T ss_pred hcccccCccEEEEEecCChhhcCcccccccccc--eEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCC
Confidence 3322 2344556666666543321 233 578999999998888887765322111111 133455666665
Q ss_pred c
Q 002220 385 P 385 (951)
Q Consensus 385 P 385 (951)
.
T Consensus 236 ~ 236 (499)
T 2dhr_A 236 V 236 (499)
T ss_dssp C
T ss_pred C
Confidence 4
No 252
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.85 E-value=0.0046 Score=67.62 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=23.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+.++|++|+|||++|+.+++.....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568899999999999999999876433
No 253
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.76 E-value=0.0048 Score=74.22 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=41.4
Q ss_pred CCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
-++++|.+..+++|.+++.. +-.....|.|+|.+|+||||||+.++......|
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 35689999999998887752 223456799999999999999999998664443
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.67 E-value=0.0042 Score=75.70 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHhhccC-------CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 187 GFVGLNSRIQKIKSLLCIG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999888887776421 11235899999999999999999998663
No 255
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.63 E-value=0.0012 Score=79.54 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHhhccC-------CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 186 DGFVGLNSRIQKIKSLLCIG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46889999888887766421 12235789999999999999999998763
No 256
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.48 E-value=0.00073 Score=65.19 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=33.1
Q ss_pred ccCCCCcEEecccc-ccccc----ccccccCCCCCCEEeccCCCCCCc----cchhcccCCCCcEEEcccCCCc
Q 002220 742 ECLTNLETLDLRLC-ERLKR----VSTSICKLKSLGSLLLAFCSNLEG----FPEILEKMELLETLDLERTGVK 806 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~ 806 (951)
.+-+.|+.|+|++| .+... +...+..-++|+.|+|++|..... +.+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456677777664 33221 233344455566666666654321 3334444555555555555554
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0055 Score=61.17 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
.|.+.+..+-..-.+++|+|.+|+||||||..++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444432223456999999999999999999987 2 223455654
No 258
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.34 E-value=0.012 Score=62.14 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
..++++|+|.+|+||||++..++..++..-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998766543333333
No 259
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.23 E-value=0.018 Score=53.11 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=73.1
Q ss_pred ccEEEcc--------------cccccccchHHHHHHHHHhCCCeEEecCcccC----C----CCCchHHHHHHhhccceE
Q 002220 11 FDVFLSF--------------RGEDTRDNFTSHLYAALCRKKIKTFIDDEELR----R----GDDISPALLNAIQGSKIS 68 (951)
Q Consensus 11 ~dvfis~--------------~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~----~----g~~~~~~~~~~i~~s~~~ 68 (951)
=-+||+| +.+| ......|...-....+..|.|..+.. . .+.|...+.+.|..|+.+
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~v 83 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNI 83 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEE
T ss_pred cCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcE
Confidence 3578888 4455 44667777766666667788865442 2 346889999999999999
Q ss_pred EEEecCCcccchhhHHHHHHHHHhhhcCCCeEEEEEeecC-Cccccccccc
Q 002220 69 VIIFSKDYASSKWCLDELVKILDCKNLNGQMVVPVFYQVD-PSDVRKQTGC 118 (951)
Q Consensus 69 i~v~s~~~~~s~wc~~el~~~~~~~~~~~~~~~pv~~~~~-p~~vr~~~~~ 118 (951)
|+++|++...|+|-.+|+..|.. +.+.+||-|..+-+ .+++....|+
T Consensus 84 IllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~ 131 (189)
T 3hyn_A 84 ILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGN 131 (189)
T ss_dssp EEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSC
T ss_pred EEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhcccc
Confidence 99999999999999999988762 34456777765422 3345444444
No 260
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.17 E-value=0.0079 Score=54.09 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=40.0
Q ss_pred CEEeccCCCCC--CcCccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCCCCCC
Q 002220 847 ERLQLSGCEIK--EIPEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 847 ~~L~L~~~~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~~~l 903 (951)
..++.+++.++ .+|..+ .++|+.|+|++|+|+.+| ..+..+++|+.|+|++|+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777777 777543 346888888888888887 45677888888888887764
No 261
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.04 E-value=0.36 Score=51.96 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
...++|....+.++...+..-......|.|+|.+|.||+++|+.+...
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence 356889888877777665422222234679999999999999998764
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.95 E-value=0.015 Score=55.68 Aligned_cols=117 Identities=18% Similarity=0.046 Sum_probs=56.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHh--cCccccCC---------CC
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIF--QEDIKIGT---------PY 278 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~--~~~~~~~~---------~~ 278 (951)
..|.|++..|.||||.|-..+-+...+=..+.++.-.... . ..+-..+.+.+.-.+. +....... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4667777777999999999887654443333333211110 0 1122222222200000 00000000 00
Q ss_pred Ch-HHHHHHhcCCcE-EEEEeCCCC-----hHHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 279 LP-DYIVERLNRMKV-LTVLDDVNK-----VRQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 279 ~~-~~l~~~l~~~~~-LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
.. +.+++.+.+.+| |||||++.. .-..+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 01 344555555554 999999832 122333333333345677899999987
No 263
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.94 E-value=0.011 Score=69.79 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHhhccC-----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG-----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
-..+.|.++..++|.+.+... ....+-|.++|++|.|||.+|+++++.....|
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 356778888888887765411 12345688999999999999999999765443
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.029 Score=58.68 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=33.2
Q ss_pred hhhHHHHHHhhccC------CCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 192 NSRIQKIKSLLCIG------LPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 192 ~~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+.-.++|.+.+... .....+++|+|.+|+||||++..++..++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 34456666666432 1345799999999999999999999877654
No 265
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.89 E-value=0.01 Score=61.65 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467889999999999999999876
No 266
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.071 Score=50.81 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997653
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.86 E-value=0.0025 Score=65.31 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=62.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccc--cchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNV--REESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVE 285 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~ 285 (951)
.-.+++|+|+.|.|||||++.++..+...+.+.+++... ....+..... +.+.............+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~----------v~q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI----------VNQREVGEDTKSFADALRA 93 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE----------EEEEEBTTTBSCHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee----------eeHHHhCCCHHHHHHHHHH
Confidence 347999999999999999999988665443444433211 0000000000 0000000011111266777
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhh
Q 002220 286 RLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRIL 331 (951)
Q Consensus 286 ~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~ 331 (951)
.+...+=++++|...+.+......... ..|..|++||-+..+.
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 777777889999998766654443322 3466788888776543
No 268
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.84 E-value=0.0028 Score=67.96 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=65.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccce-eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGK-CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
.+++|+|+.|.||||+.+.+...+....... +.+.+..+... .... ..+.+...........+.++..|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~~~~--------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-ESKK--------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCSS--------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-hccc--------cceeeeeeccccCCHHHHHHHHhh
Confidence 5999999999999999999988665443222 22221111000 0000 000000001111111268888999
Q ss_pred CCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhh
Q 002220 289 RMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILD 332 (951)
Q Consensus 289 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~ 332 (951)
..+=+|++|.+.+.+.++.+.... ..|..|++|+-....+.
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 999999999999877766654432 34667888888776543
No 269
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.74 E-value=0.013 Score=59.03 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=26.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
-.+++|.|.+|+|||||++.++......-..+.|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999999999997554332334454
No 270
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.65 E-value=0.048 Score=55.09 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
..-+..++....+....+.++|++|.|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34467777543244567999999999999999999984
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.52 E-value=0.038 Score=58.37 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.2
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
....+++|+|+.|+||||+++.++..++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999765443
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.49 E-value=0.033 Score=58.03 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=27.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
.++++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999998765443334443
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.47 E-value=0.049 Score=59.59 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+|.++|.+|+||||++.+++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999866544
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.43 E-value=0.012 Score=63.99 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=35.7
Q ss_pred cccchhhHHHHHHhhc-------------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 188 FVGLNSRIQKIKSLLC-------------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
++|.+..++.+...+. ......+.|.++|++|+|||++|+.+++....
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6788877777776662 11123457899999999999999999987643
No 275
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.016 Score=57.15 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+++|.+.+........+|+|.|..|.|||||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444432234567999999999999999999988665
No 276
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.33 E-value=0.022 Score=55.78 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=32.7
Q ss_pred chhhHHHHHHhhccC-CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 191 LNSRIQKIKSLLCIG-LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 191 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
|++.+++|.+.+... .....+|+|.|..|.||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566666655432 24567999999999999999999988654
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.29 E-value=0.0081 Score=57.60 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|.|.|++|.||||+|+.++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 278
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.23 E-value=0.015 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...++|.|.|++|.||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999999999998865
No 279
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.16 E-value=0.088 Score=57.93 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=32.2
Q ss_pred hHHHHHHhhccC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 194 RIQKIKSLLCIG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 194 ~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
-.+++.++|... ....++|.++|.+|+||||+|..++..++.+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 345566666422 1346899999999999999999999877654
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.15 E-value=0.049 Score=58.04 Aligned_cols=50 Identities=26% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 195 IQKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 195 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
...|...|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 455666664 23344579999999999999999999987654434466764
No 281
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.14 E-value=0.013 Score=58.05 Aligned_cols=35 Identities=14% Similarity=-0.245 Sum_probs=27.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
-.++.|+|..|.||||+|..++++...+-..+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 47899999999999999999998776554333333
No 282
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.10 E-value=0.021 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|.|.|++|.||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.05 E-value=0.011 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=22.3
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|.|++|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988654
No 284
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.02 E-value=0.05 Score=56.86 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+++|+|++|+||||+++.++..++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999765543
No 285
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.87 E-value=0.008 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.056 Sum_probs=21.3
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+++.|+|..|.||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999987777653
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.86 E-value=0.015 Score=56.87 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++|+|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.85 E-value=0.03 Score=58.14 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=25.5
Q ss_pred CCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 206 LPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.....+|+|+|..|.||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345689999999999999999999886653
No 288
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.81 E-value=0.077 Score=55.41 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+++|+|+.|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999986553
No 289
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.81 E-value=0.013 Score=63.55 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=62.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcccccee-ecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKC-FMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
.-.+++|+|+.|.||||+++.+...+.......+ ++....+... ..... -+.+...+.........++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~~~--------~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKKS--------IVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCSSS--------EEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccCce--------EEEeeecCCCHHHHHHHHHHH
Confidence 3468999999999999999999886654423333 3221100000 00000 000000000111223677888
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchh
Q 002220 287 LNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRI 330 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 330 (951)
++..+=++++|.+.+.+......... ..|..|+.|+-...+
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 87788899999998776655443332 346667777766543
No 290
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.80 E-value=0.025 Score=59.64 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=33.1
Q ss_pred cchhhHHHHHHhhc--cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 190 GLNSRIQKIKSLLC--IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 190 Gr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
+.+.-.+.+.+.+. ...+....|.|+|++|.||||+|+.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33444444544443 1234456799999999999999999998766555
No 291
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.78 E-value=0.34 Score=51.73 Aligned_cols=156 Identities=11% Similarity=-0.065 Sum_probs=95.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh-ccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS-REFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
-.++..++|..|.||++.|+.+...+. ..|+....+. +. . ..++..+...+.. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~-~~~~~~l~~~~~~-------------------~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---P-NTDWNAIFSLCQA-------------------MS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---T-TCCHHHHHHHHHH-------------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---C-CCCHHHHHHHhcC-------------------cC
Confidence 457899999999999999999988653 3443211111 11 1 2233333222111 11
Q ss_pred hcCCcEEEEEeCCCC---hHHHHHHHhccCCCCCCCEEEEEeCC-------chhhhhcCCCccceEEcCCCChhhhHHHH
Q 002220 287 LNRMKVLTVLDDVNK---VRQLHYLACVLDQFGPGSRIIITTRD-------KRILDDFGVCDTDIYEVNKLRFHEALVLF 356 (951)
Q Consensus 287 l~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IlvTtR~-------~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf 356 (951)
+-+++-++|+|+++. ....+.+...+....+++.+|+++.. ..+.....- ...+++..+++.++..+.+
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEECCCCTTHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEeeCCCHHHHHHHH
Confidence 234567888999865 34566676666655567777776643 234333211 1268999999999999888
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 357 SNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
.+.+-..... -..+.++.+++.++|...++..
T Consensus 152 ~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 152 AARAKQLNLE--LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTCE--ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHhchHHHHHHH
Confidence 8776332211 1125677888999998877654
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.78 E-value=0.015 Score=56.11 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+.|.|+|++|+||||+|+.++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999865
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.76 E-value=0.09 Score=57.54 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..++|+++|.+|+||||++..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999866554
No 294
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.73 E-value=0.068 Score=57.06 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+++|+|+.|+||||+++.++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999986654
No 295
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.68 E-value=0.079 Score=55.16 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..++++++|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998765
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.67 E-value=0.013 Score=56.23 Aligned_cols=29 Identities=38% Similarity=0.498 Sum_probs=23.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
|.|+|+|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 56889999999999999999876554443
No 297
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.57 E-value=0.077 Score=58.61 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=25.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+++|+|..|+|||||++.++..++..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 45799999999999999999999866543
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.49 E-value=0.029 Score=56.77 Aligned_cols=40 Identities=18% Similarity=-0.001 Sum_probs=28.5
Q ss_pred hHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 194 RIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+.++...+.........|+|.|++|+||||+|+.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444333223456789999999999999999998755
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.47 E-value=0.047 Score=59.90 Aligned_cols=31 Identities=35% Similarity=0.625 Sum_probs=24.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccce
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGK 240 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (951)
+.++|+|.+|+||||||..+......++..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 3688999999999999999998766544433
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.45 E-value=0.018 Score=54.91 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEEecCCChhHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAV 229 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~ 229 (951)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 301
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.40 E-value=0.031 Score=62.75 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 46899999998888776543 368899999999999999998865
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.38 E-value=0.031 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.+|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987753
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.02 Score=54.95 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988654
No 304
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.35 E-value=0.047 Score=56.40 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=27.1
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhccc--cceeecc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISREF--EGKCFMP 244 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 244 (951)
++-|+|.+|+||||||.+++......+ ..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999987665542 3466764
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.34 E-value=0.023 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+|.|.|++|.||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.34 E-value=0.032 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...+|.|.|++|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999998865
No 307
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.32 E-value=0.021 Score=61.60 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=34.8
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+.++|.+..++.+........ ..-+.|+|.+|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886655444332211 22388999999999999999998653
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.29 E-value=0.034 Score=54.33 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...+|+|.|++|.||||+|+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998765
No 309
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.27 E-value=0.51 Score=51.24 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
..++|....+.++.+.+..-...-..|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 35788888787777665422222233589999999999999998764
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.26 E-value=0.082 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
-.+++|+|..|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.24 E-value=0.093 Score=55.35 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=40.9
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHH
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSE 266 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 266 (951)
...|.+++ .+-..-.++.|.|.+|+||||||.+++.....+-..++|+.. ......+...+.+.
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl-------E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL-------EMGKKENIKRLIVT 118 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES-------SSCHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC-------CCCHHHHHHHHHHH
Confidence 34455555 333445789999999999999999998765443345666531 23345555555544
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.24 E-value=0.025 Score=53.54 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...+|+|.|+.|+||||+|+.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998654
No 313
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.24 E-value=0.019 Score=54.67 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|+|+.|.||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 314
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.20 E-value=0.033 Score=58.52 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=25.3
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
++.+||+|+|-|||||||.|..++.-+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 467999999999999999999998765543
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.19 E-value=0.02 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+.|.|.|++|.||||+|+.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 316
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.19 E-value=0.083 Score=58.10 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=24.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.++|+|+|.+|+||||+|..++...+.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5699999999999999999999866543
No 317
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.13 E-value=0.029 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
...+++|.|++|.||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999864
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.12 E-value=0.035 Score=52.06 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..++++|.|..|.|||||+..+...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877544
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.10 E-value=0.022 Score=54.37 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
No 320
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.08 E-value=0.11 Score=55.48 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=33.3
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc------cccceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR------EFEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (951)
.|..+|..+-..-.++.|+|.+|+||||||.+++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 455555433345679999999999999999999876422 123466764
No 321
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.04 E-value=0.056 Score=57.31 Aligned_cols=29 Identities=21% Similarity=0.010 Sum_probs=24.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
-..++|+|.+|+|||||++.+++.+..+.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 45899999999999999999988665443
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.02 E-value=0.04 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...+|+|+|+.|.||||+|+.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999998764
No 323
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.99 E-value=0.042 Score=52.87 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=30.7
Q ss_pred hhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 193 SRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.-+..+..++. +-+....+.|+|++|+||||+|..+++.+..
T Consensus 43 ~f~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33555666664 2233457999999999999999999987643
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.99 E-value=0.023 Score=55.67 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+|+|.|+.|.||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.98 E-value=0.03 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.3
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
++|+|.|++|.||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.95 E-value=0.029 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|.|++|+||||+|+.++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 327
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.88 E-value=0.029 Score=55.25 Aligned_cols=28 Identities=36% Similarity=0.317 Sum_probs=24.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..++|+|+|+.|+|||||++.++.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999886543
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.85 E-value=0.026 Score=54.48 Aligned_cols=29 Identities=38% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
++++|.|+.|.|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 57899999999999999999987654443
No 329
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.83 E-value=0.058 Score=48.34 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=33.7
Q ss_pred EEEeecCCCC--CCCCccccccceecccCCccccccccc-cccccccceeccCCCC
Q 002220 590 YLYWHEYPLK--TLPLDFDLENLIALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSH 642 (951)
Q Consensus 590 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~ 642 (951)
.++.+++.++ .+|..+ ..+|+.|+|++|.|+.++.+ |..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4566666666 666543 34577777777777777654 5666677777776664
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.82 E-value=0.044 Score=52.79 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+|+|.|++|.||||+|+.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987653
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.80 E-value=0.035 Score=54.00 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+|+|.|++|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.79 E-value=0.032 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998664
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.78 E-value=0.026 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|.|++|.||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988653
No 334
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.67 E-value=0.06 Score=59.01 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=36.5
Q ss_pred CCcccchhhHHHHHHhhcc------------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 186 DGFVGLNSRIQKIKSLLCI------------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
..++|.+..++.|...+.. .....+-|.++|++|+||||+|+.++......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 3577777777766554421 011245688999999999999999998765544
No 335
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.027 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=18.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987653
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.60 E-value=0.03 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
++|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988653
No 337
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.59 E-value=0.035 Score=53.63 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 338
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.58 E-value=0.04 Score=53.88 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...+|+|.|+.|.||||+|+.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.57 E-value=0.043 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 340
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.56 E-value=0.044 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
....+|+|.|++|.||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998754
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.56 E-value=0.039 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|.|++|+||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998653
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.54 E-value=0.042 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..|+|.|++|.||||+|+.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 343
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.50 E-value=0.07 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.50 E-value=0.042 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
....|+|+|+.|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.49 E-value=0.056 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=23.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.+|+|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999876543
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.45 E-value=0.05 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.44 E-value=0.071 Score=55.93 Aligned_cols=46 Identities=24% Similarity=0.171 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHhhccC--CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 189 VGLNSRIQKIKSLLCIG--LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 189 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|-...+..+...+... .....+|+|.|..|.||||+|+.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444455444444322 34567999999999999999999887654
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.44 E-value=0.056 Score=53.41 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..+|+|.|+.|+||||+|+.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.42 E-value=0.044 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.|+|.|++|.||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 350
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.41 E-value=0.087 Score=55.84 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=59.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcccc--CCCCCh-HHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKI--GTPYLP-DYIVER 286 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~--~~~~~~-~~l~~~ 286 (951)
.+++|+|..|.|||||++.++..+.. -...+.+....+... . .. ...... .....+ ..+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~-~-~~------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF-K-HH------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC-S-SC------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc-c-cc------------hhEEEEEeCCChhHHHHHHHH
Confidence 48999999999999999999875533 244555543321110 0 00 000000 022233 777888
Q ss_pred hcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchh
Q 002220 287 LNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRI 330 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 330 (951)
+..++=++++|.+.+.+.++.+.. +.. + +..+|+||-....
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~~-~~~-g-~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYNV-LCS-G-HKGTLTTLHAGSS 277 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHHH-HHT-T-CCCEEEEEECSSH
T ss_pred hhhCCCEEEEcCCChHHHHHHHHH-Hhc-C-CCEEEEEEcccHH
Confidence 888888999999987655554433 221 1 2235666654433
No 351
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.36 E-value=0.036 Score=54.42 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..++|+|+|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988653
No 352
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.32 E-value=0.051 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
....+|+|.|+.|.||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999874
No 353
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.28 E-value=0.11 Score=56.00 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..++.+.+........+|+|+|.+|+|||||+..++.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444444434456789999999999999999999876543
No 354
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.27 E-value=0.046 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+++|.|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.26 E-value=0.049 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+|+|.|++|.||||+|+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.25 E-value=0.045 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=22.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...|+|.|++|.||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988653
No 357
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.23 E-value=0.24 Score=52.29 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=40.9
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHH
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEI 267 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l 267 (951)
...|.+.+. +-..-.++.|.|.+|+||||||..++......-..++|+. - ......+...+++..
T Consensus 33 ~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------l-Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 33 FVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------L-EMSAEQLALRALSDL 97 (338)
T ss_dssp CHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------S-SSCHHHHHHHHHHHH
T ss_pred ChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------C-CCCHHHHHHHHHHHh
Confidence 344555542 2234468999999999999999999886554333455553 1 334456666665543
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.19 E-value=0.052 Score=53.51 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..+|+|.|+.|+||||+|+.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 359
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.12 E-value=0.053 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|.|.|++|.||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998653
No 360
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.09 E-value=0.58 Score=52.11 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (951)
..|.+.+ .+-..-.++.|.|.+|+||||||..++..+... -..++|+.
T Consensus 191 ~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444444 222345689999999999999999999866543 22455553
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.02 E-value=0.061 Score=52.86 Aligned_cols=26 Identities=42% Similarity=0.414 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
....+|+|+|++|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44579999999999999999998764
No 362
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.01 E-value=0.051 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+|+|.|+.|+||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 363
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.99 E-value=0.12 Score=57.80 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..++|+|+|.+|+||||++.+++..++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999866543
No 364
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.97 E-value=0.054 Score=54.12 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+|+|+|+.|.||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 365
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.97 E-value=0.75 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
....++++|.+|+|||||...+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 345789999999999999988764
No 366
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.96 E-value=0.067 Score=52.69 Aligned_cols=27 Identities=41% Similarity=0.395 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...+|+|.|..|.|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 367
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.91 E-value=0.049 Score=53.36 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+++|.|+.|.|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.86 E-value=0.062 Score=54.72 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
....+|+|.|++|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 369
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.81 E-value=0.06 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.543 Sum_probs=21.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|+|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.77 E-value=0.053 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=22.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998654
No 371
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.77 E-value=0.059 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+++|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 372
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.72 E-value=0.048 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred cEEEEEEecCCChhHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~ 230 (951)
-.+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 373
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.71 E-value=0.062 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+|+|.|+.|.||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 374
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.70 E-value=0.08 Score=53.59 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=28.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
.-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999998875544434566653
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.65 E-value=0.056 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998754
No 376
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.63 E-value=0.15 Score=54.37 Aligned_cols=50 Identities=28% Similarity=0.225 Sum_probs=35.5
Q ss_pred HHHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 195 IQKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 195 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 445666664 23244579999999999999999999876554434566664
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.62 E-value=0.07 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
...+|+|+|+.|.||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.56 E-value=0.099 Score=53.19 Aligned_cols=27 Identities=30% Similarity=0.222 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...+|.|.|++|.||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988653
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.53 E-value=0.086 Score=52.30 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 192 NSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
++..+.+.+.+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444455554422 356899999999999999999998865444
No 380
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.53 E-value=0.063 Score=52.67 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+|+|.|+.|.||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.51 E-value=0.045 Score=54.07 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
+|+|.|..|.||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.51 E-value=0.054 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|+|+.|.||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998664
No 383
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.50 E-value=0.48 Score=52.34 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=32.9
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...|.+++. +-..-.++.|.|.+|+||||+|.+++.....+-..++|+
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 344555552 334456899999999999999999998665443345555
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.49 E-value=0.082 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|+|.|+.|.||||+|+.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988653
No 385
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.47 E-value=0.12 Score=51.58 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=27.8
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+.+...+.. .....|+|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444444422 3468899999999999999999987543
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.43 E-value=0.071 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 387
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.34 E-value=0.3 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=18.6
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-++.|+|.+|.|||++|.....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3678999999999999987654
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.34 E-value=0.068 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999997653
No 389
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.33 E-value=0.075 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 390
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.30 E-value=0.096 Score=56.00 Aligned_cols=50 Identities=32% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 195 IQKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 195 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
...|..+|. .+-..-+++.|.|.+|+||||||.+++......-..++|++
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445666664 22244579999999999999999999876654444567765
No 391
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.25 E-value=0.088 Score=52.61 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=26.9
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|...+..+-..-.+++|+|++|.|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222345799999999999999999998743
No 392
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.24 E-value=0.058 Score=52.57 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
++++|+|+.|.|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987553
No 393
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.16 E-value=0.48 Score=51.66 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=25.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..++++++|.+|+||||++..++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876554
No 394
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.12 E-value=0.59 Score=51.85 Aligned_cols=65 Identities=15% Similarity=-0.001 Sum_probs=41.3
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecccccchhcCCCChHHHHHHHHHHH
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMPNVREESENGGGLVYLRDRVVSEI 267 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l 267 (951)
...|.+++ .+-..-.++.|.|.+|+||||+|..++..+... -..++|+.. ......+...++...
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-------SSCHHHHHHHHHHHH
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-------CCCHHHHHHHHHHHH
Confidence 34455555 333445689999999999999999999866532 234555531 233455666665543
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.12 E-value=0.098 Score=51.54 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=23.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|.|.|+.|.||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999988664
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.11 E-value=0.074 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.06 E-value=0.084 Score=52.49 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|+|.|++|.||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 398
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.04 E-value=0.22 Score=52.68 Aligned_cols=28 Identities=21% Similarity=0.038 Sum_probs=23.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
-..++|.|.+|+|||+|+..+++.+..+
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 3578999999999999999999876543
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.99 E-value=0.092 Score=54.36 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
....+|+|.|+.|.||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999983
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.96 E-value=0.086 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.219 Sum_probs=22.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998654
No 401
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.93 E-value=0.088 Score=55.24 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
....+|+|.|..|.|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999987654
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.85 E-value=0.094 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|+|.|+.|.||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.79 E-value=0.079 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..|.|.|++|.||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999866
No 404
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.77 E-value=0.1 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...+|+|.|..|.||||||+.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998754
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.76 E-value=0.099 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=22.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998763
No 406
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.76 E-value=0.099 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.++++|+|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999986543
No 407
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.67 E-value=0.087 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.67 E-value=0.074 Score=61.84 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 456899998888888877543 488999999999999999999865433
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.66 E-value=0.094 Score=52.90 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.|..+|..+-..-.+++|+|.+|+||||||+.++..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455555322234569999999999999999999875
No 410
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.66 E-value=0.083 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
-.+++|+|+.|.|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 411
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.65 E-value=0.1 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.-.+++|.|..|.|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999999865
No 412
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.62 E-value=0.16 Score=49.74 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=23.7
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc-ccc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE-FEG 239 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~ 239 (951)
-.|.+.|.||+||||+|..++.....+ ++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 457889999999999999999865543 443
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.62 E-value=0.089 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=22.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...|+|.|+.|.||||+|+.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998865
No 414
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.61 E-value=0.13 Score=54.09 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...++|+|+|-||+||||+|..++..+...-..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4568999999999999999999998765542233333
No 415
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.59 E-value=0.28 Score=52.52 Aligned_cols=52 Identities=27% Similarity=0.247 Sum_probs=36.3
Q ss_pred hhHHHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 193 SRIQKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 193 ~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
.-...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 57 TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 57 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 33455666664 22234568999999999999999999876554434567765
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.54 E-value=0.11 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 417
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.53 E-value=0.072 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++|+|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999997653
No 418
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.52 E-value=0.14 Score=52.58 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=25.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
++|+|.|-||+||||+|..++..+...-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998766443333433
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.45 E-value=0.078 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999886554
No 420
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.41 E-value=0.075 Score=55.22 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+..+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987653
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.41 E-value=0.11 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|+|.|++|.||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 422
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.38 E-value=0.78 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+.+.|.|.+|.||||++.++...+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999999998866444
No 423
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.37 E-value=0.077 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
-.+++|+|+.|.|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.35 E-value=0.17 Score=54.46 Aligned_cols=29 Identities=38% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 205 GLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 205 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+-+..++++|+|++|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33455799999999999999999999754
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.35 E-value=0.11 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 426
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.28 E-value=0.49 Score=52.03 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=33.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhc-cccceeecccccchhcCCCChHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISR-EFEGKCFMPNVREESENGGGLVYLRDRVV 264 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~il 264 (951)
-..++|.|.+|+|||+|+.++++.+.. +-+.++|+ .+++. ......+.+.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER---~rEv~e~~~~~~ 217 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGER---TREGNDLYMEMK 217 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCC---SHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccC---cHHHHHHHHhhh
Confidence 357899999999999999999987643 33445554 34332 223444444444
No 427
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.25 E-value=0.099 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+++|+|..|+|||||++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.19 E-value=0.11 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.09 E-value=0.17 Score=51.72 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999997665
No 430
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.08 E-value=0.11 Score=51.35 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=23.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988654
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.06 E-value=0.14 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..++|+|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999864
No 432
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.04 E-value=0.17 Score=52.69 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=23.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.++|+|.|-||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3688889999999999999999866543
No 433
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.01 E-value=0.29 Score=53.54 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=26.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 243 (951)
-..++|.|.+|+|||+|+..+++.+... -+.++|+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 3578999999999999999999876433 2344443
No 434
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.91 E-value=0.17 Score=52.58 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..++++|+|.+|+||||++..++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876544
No 435
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.82 E-value=0.15 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.-.+++|.|+.|.|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999984
No 436
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.58 E-value=0.21 Score=55.92 Aligned_cols=48 Identities=6% Similarity=-0.039 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 188 FVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.+.|.+-.+.+.+..........+|.+.|++|.||||+|+.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 334444444455544211234478999999999999999999998753
No 437
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.56 E-value=0.17 Score=52.79 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=27.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcccc-ceeec
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFE-GKCFM 243 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~ 243 (951)
.-.+++|.|.+|+|||||++.++..+...-. .+.|+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3468999999999999999999986654422 34454
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.53 E-value=0.16 Score=53.37 Aligned_cols=28 Identities=32% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 439
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.51 E-value=0.6 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=23.3
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+++.|.|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 688999999999999999998865543
No 440
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.50 E-value=0.69 Score=52.33 Aligned_cols=54 Identities=6% Similarity=-0.146 Sum_probs=36.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecccccchhcCCCChHHHHHHHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMPNVREESENGGGLVYLRDRVVSEI 267 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l 267 (951)
..-.++.|.|.+|+||||||.+++...... -..++|+.. ......+...++...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-------E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-------EESVEETAEDLIGLH 294 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-------SSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-------cCCHHHHHHHHHHHH
Confidence 345689999999999999999999876554 334566531 223445666555443
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.49 E-value=0.12 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
-+.|.|.|..|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998753
No 442
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.36 E-value=0.091 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=16.5
Q ss_pred cEEEEEEecCCChhHHHHHHHH-HHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVF-KLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~-~~~ 233 (951)
-.+++|+|+.|.|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 644
No 443
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.31 E-value=0.2 Score=52.97 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc------ccceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE------FEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 244 (951)
.|..+|..+-..-.++.|+|.+|+||||||.+++...... -..++|+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4455553222345699999999999999999998764322 23456664
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.11 E-value=0.2 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
-.+++|+|.+|+||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999875543
No 445
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.10 E-value=0.16 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+|.|.|++|.||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.99 E-value=0.18 Score=50.64 Aligned_cols=27 Identities=30% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
....+|+|.|+.|.||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998755
No 447
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.95 E-value=0.34 Score=51.58 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=25.2
Q ss_pred CCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 206 LPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..+..+|+|+|.+|+|||||+..++.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 355789999999999999999999876543
No 448
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.93 E-value=0.15 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.7
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.. .+++|+|+.|.|||||++.++-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7999999999999999999985
No 449
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.92 E-value=0.14 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.144 Sum_probs=20.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+++|+|+.|.|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998864
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.87 E-value=0.2 Score=50.01 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
....|+|.|+.|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999987765
No 451
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.78 E-value=0.63 Score=45.15 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=54.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
.-.+..++|.-|.||||.|...+.+...+-..++.+.-... . ..+.. .+.+.+........ ......+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~-R~ge~----~i~s~~g~~~~a~~-~~~~~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--N-RYSEE----DVVSHNGLKVKAVP-VSASKDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEE-CSSGGGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--C-cchHH----HHHhhcCCeeEEee-cCCHHHHHHHH
Confidence 34788999999999999999988876544333333321110 0 11111 22333221111000 01112222233
Q ss_pred cCCcEEEEEeCCC--ChHHHHHHHhccCCCCCCCEEEEEeCCchh
Q 002220 288 NRMKVLTVLDDVN--KVRQLHYLACVLDQFGPGSRIIITTRDKRI 330 (951)
Q Consensus 288 ~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 330 (951)
.++--+|++|.+. +.++++.+.... ..|..||+|-++.+.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQDF 140 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBCT
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccccc
Confidence 3333499999873 344554443321 237789999996643
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.71 E-value=0.19 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998654
No 453
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.71 E-value=0.27 Score=47.94 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccce
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGK 240 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (951)
+.|+|-|.-|+||||+++.+++.+...++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 5789999999999999999999887655533
No 454
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.68 E-value=0.16 Score=60.95 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=40.2
Q ss_pred CCCcccchhhHHHHHHhhccC-----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG-----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
-.+++|.+...+.|.+.+... -...+.+.++|++|+||||||+.++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356789998888888776421 12345688999999999999999999775443
No 455
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.56 E-value=0.22 Score=53.20 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|..+|..+-..-.++.|+|.+|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444553333456899999999999999999998765
No 456
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.52 E-value=0.15 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||++.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999874
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.47 E-value=0.21 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...|+|.|..|+||||+|+.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998664
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.34 E-value=2.1 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+++|+|.+|+|||||++.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999998875
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.31 E-value=0.16 Score=55.96 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999987644
No 460
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.30 E-value=0.2 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999873
No 461
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.26 E-value=0.16 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||++.++-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999874
No 462
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.12 E-value=0.23 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=23.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999774
No 463
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.05 E-value=0.31 Score=55.27 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.-.+++|+|+.|.|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999987754
No 464
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.05 E-value=0.26 Score=48.02 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=25.5
Q ss_pred EEEEEE-ecCCChhHHHHHHHHHHhhccccceeec
Q 002220 210 RTIGIW-GMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 210 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
++|+|+ +-||+||||+|..++..+...-..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 578887 6899999999999998766543334444
No 465
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.87 E-value=0.35 Score=48.71 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=23.8
Q ss_pred CcEEEEEEe-cCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWG-MGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~ 236 (951)
..++|+|+| -||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 357888774 68999999999999877665
No 466
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.71 E-value=0.24 Score=50.02 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHH-hhccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKL-ISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~ 243 (951)
..-.++.|.|.+|+|||++|.+++.. ....-..++|+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 34468999999999999999998754 33333445554
No 467
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.63 E-value=0.22 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+++|+|..|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.61 E-value=0.27 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
+-|+|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999876
No 469
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.60 E-value=0.5 Score=50.17 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
....+++|+|.+|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4568999999999999999999987544
No 470
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.60 E-value=0.19 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||++.++-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999874
No 471
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.59 E-value=0.4 Score=46.04 Aligned_cols=24 Identities=29% Similarity=0.153 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
....|+|+|.+|+|||||+..+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999876
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.53 E-value=0.28 Score=55.50 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 457899999999999999999998764333
No 473
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.52 E-value=0.25 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 474
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.50 E-value=0.19 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||++.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 475
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.42 E-value=0.23 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
-.+++|+|..|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 476
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.39 E-value=0.29 Score=49.52 Aligned_cols=32 Identities=28% Similarity=0.652 Sum_probs=24.3
Q ss_pred EEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
|+|.|-||+||||+|..++..+...-..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999998776543334333
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.36 E-value=0.2 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999874
No 478
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.36 E-value=0.38 Score=62.29 Aligned_cols=48 Identities=33% Similarity=0.356 Sum_probs=34.6
Q ss_pred HHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 197 KIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4666664 22245679999999999999999999886555444456664
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.34 E-value=0.23 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.-.|+|+|.+|+|||||.+.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35689999999999999999986
No 480
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.33 E-value=0.35 Score=52.33 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.0
Q ss_pred CCcEEEEEEe-cCCChhHHHHHHHHHHhhccccceeec
Q 002220 207 PDFRTIGIWG-MGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...++|+|+| -||+||||+|..++..+...-..+..+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568888885 999999999999998765543334444
No 481
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.29 E-value=0.17 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+++|+|+.|.|||||++.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 482
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.22 E-value=0.2 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||++.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999875
No 483
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.22 E-value=0.2 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999875
No 484
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.19 E-value=0.22 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.-.+++|+|..|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 485
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.10 E-value=0.21 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|+.|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999874
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.08 E-value=0.27 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..++|.|++|.||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.05 E-value=0.2 Score=47.92 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEEEecCCChhHHHHHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.04 E-value=0.41 Score=46.91 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...|+|.|+.|.||||+++.+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999877644
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.02 E-value=0.22 Score=49.68 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=32.1
Q ss_pred HHHHHHhcCCcEEEEEeCCC---ChHHHHHHHhc-cCCCCCCCEEEEEeCCchhhh
Q 002220 281 DYIVERLNRMKVLTVLDDVN---KVRQLHYLACV-LDQFGPGSRIIITTRDKRILD 332 (951)
Q Consensus 281 ~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~-~~~~~~gs~IlvTtR~~~v~~ 332 (951)
-.+.+.+-.++-+++||.-- |....+.+... +.....|..||++|.+...+.
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 34456667788899999874 33334444442 222234677888888876654
No 490
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.98 E-value=0.22 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|..|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999874
No 491
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.98 E-value=0.25 Score=51.28 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+.-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344689999999999999999998755
No 492
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.93 E-value=0.53 Score=51.19 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=21.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..++|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 34789999999999999999886544
No 493
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.92 E-value=0.4 Score=50.97 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhh--ccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLIS--REFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~ 243 (951)
...+++.+.|-||+||||+|..++..+. ..-..+..+
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4568999999999999999999998776 443334444
No 494
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.90 E-value=0.22 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|.|+.|.|||||++.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 495
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.83 E-value=0.29 Score=53.15 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.5
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHH
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
..|..+|..+-..-.++.|+|.+|+|||||+..++-
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 345555532223456999999999999999998764
No 496
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.81 E-value=0.28 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEecCCChhHHHHHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-|+++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.67 E-value=0.25 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.4
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+|+|.|+.|.||||+|+.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998754
No 498
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.65 E-value=0.23 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.+++|+|+.|.|||||++.++--...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 58999999999999999998764433
No 499
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.60 E-value=0.23 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|..|.|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 500
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.59 E-value=0.67 Score=59.24 Aligned_cols=52 Identities=31% Similarity=0.310 Sum_probs=35.7
Q ss_pred hhHHHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 193 SRIQKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 193 ~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
.-..+|..++. .+-..-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 715 TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33445666553 22234579999999999999999999987654433456654
Done!