Query 002221
Match_columns 951
No_of_seqs 387 out of 2053
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 2E-156 5E-161 1474.0 75.0 858 53-941 1-891 (1204)
2 KOG1933 Cholesterol transport 100.0 6E-133 1E-137 1211.5 37.2 839 51-948 1-860 (1201)
3 TIGR00918 2A060602 The Eukaryo 100.0 1.2E-84 2.6E-89 805.7 44.6 541 365-923 38-759 (1145)
4 PF02460 Patched: Patched fami 100.0 2.9E-58 6.3E-63 572.7 43.6 494 400-924 2-513 (798)
5 KOG1934 Predicted membrane pro 100.0 4.9E-57 1.1E-61 546.7 41.3 519 365-915 4-538 (868)
6 KOG1935 Membrane protein Patch 100.0 3.2E-51 6.9E-56 467.5 29.9 533 365-915 54-713 (1143)
7 COG1033 Predicted exporters of 100.0 3.2E-37 7E-42 367.2 39.8 442 374-913 2-446 (727)
8 TIGR00921 2A067 The (Largely A 100.0 7E-35 1.5E-39 360.7 42.7 442 383-914 2-448 (719)
9 COG1033 Predicted exporters of 100.0 7.2E-29 1.6E-33 296.0 37.4 360 366-800 364-725 (727)
10 TIGR00833 actII Transport prot 100.0 3.5E-28 7.5E-33 305.8 41.4 414 383-910 1-423 (910)
11 PF12349 Sterol-sensing: Stero 100.0 1.5E-28 3.3E-33 245.3 14.8 152 661-812 1-152 (153)
12 TIGR00920 2A060605 3-hydroxy-3 100.0 1.8E-28 3.9E-33 289.9 13.3 168 631-805 60-228 (886)
13 TIGR03480 HpnN hopanoid biosyn 100.0 1.1E-25 2.3E-30 283.1 38.8 258 608-907 246-505 (862)
14 TIGR00921 2A067 The (Largely A 99.9 6.1E-25 1.3E-29 272.3 38.8 352 369-795 367-719 (719)
15 PF03176 MMPL: MMPL family; I 99.9 1.7E-22 3.7E-27 227.9 29.6 193 592-800 108-306 (333)
16 TIGR00833 actII Transport prot 99.9 8.8E-22 1.9E-26 248.0 37.0 179 608-799 721-906 (910)
17 COG2409 Predicted drug exporte 99.8 3.4E-18 7.3E-23 215.2 32.9 424 374-912 3-436 (937)
18 TIGR03480 HpnN hopanoid biosyn 99.8 3.6E-18 7.9E-23 215.2 26.3 159 616-793 697-856 (862)
19 PF02460 Patched: Patched fami 99.8 5.9E-16 1.3E-20 193.8 38.6 373 371-796 422-797 (798)
20 PRK10614 multidrug efflux syst 99.7 1.9E-14 4.2E-19 183.9 29.5 260 608-904 312-592 (1025)
21 PRK10555 aminoglycoside/multid 99.6 9.7E-14 2.1E-18 177.5 30.6 257 608-898 318-597 (1037)
22 TIGR00918 2A060602 The Eukaryo 99.6 2.9E-13 6.3E-18 170.4 33.7 155 633-802 968-1123(1145)
23 PRK09579 multidrug efflux prot 99.6 1.3E-13 2.8E-18 175.9 30.4 261 608-906 311-592 (1017)
24 TIGR00915 2A0602 The (Largely 99.6 1.2E-13 2.6E-18 176.8 30.1 256 608-898 318-598 (1044)
25 KOG1934 Predicted membrane pro 99.6 1E-12 2.2E-17 161.4 34.0 373 372-799 456-833 (868)
26 PRK10503 multidrug efflux syst 99.6 2.3E-13 5E-18 174.0 29.3 261 608-904 321-602 (1040)
27 PRK09577 multidrug efflux prot 99.6 3E-13 6.5E-18 173.0 29.1 174 608-798 317-497 (1032)
28 PRK15127 multidrug efflux syst 99.6 6.5E-13 1.4E-17 170.0 30.1 174 608-798 318-498 (1049)
29 PF00873 ACR_tran: AcrB/AcrD/A 99.5 3.8E-13 8.2E-18 173.0 25.9 264 608-905 311-594 (1021)
30 PRK13022 secF preprotein trans 99.5 1.4E-13 3E-18 151.6 17.8 165 619-800 119-286 (289)
31 TIGR00914 2A0601 heavy metal e 99.5 1.2E-12 2.6E-17 168.3 28.9 253 608-903 321-602 (1051)
32 PRK13024 bifunctional preprote 99.5 2.3E-13 5.1E-18 167.3 21.4 153 633-800 269-422 (755)
33 COG0841 AcrB Cation/multidrug 99.5 9E-13 1.9E-17 165.7 25.3 256 608-898 309-581 (1009)
34 TIGR00916 2A0604s01 protein-ex 99.5 1.4E-13 3.1E-18 142.8 14.7 137 635-785 52-191 (192)
35 PRK13023 bifunctional preprote 99.5 6.4E-13 1.4E-17 161.1 19.6 170 615-799 262-433 (758)
36 PRK14726 bifunctional preprote 99.5 1.8E-12 3.8E-17 159.1 20.0 150 635-799 377-527 (855)
37 TIGR00917 2A060601 Niemann-Pic 99.5 3.6E-11 7.8E-16 154.6 32.7 150 633-796 1051-1203(1204)
38 PRK05812 secD preprotein trans 99.4 4.9E-12 1.1E-16 148.1 18.3 151 633-798 336-487 (498)
39 TIGR01129 secD protein-export 99.4 1.2E-11 2.6E-16 141.7 17.3 146 633-793 251-397 (397)
40 TIGR00966 3a0501s07 protein-ex 99.4 3.7E-11 8E-16 129.8 19.8 140 634-787 102-244 (246)
41 PRK12911 bifunctional preprote 99.3 2.1E-11 4.6E-16 150.5 19.5 130 669-799 934-1064(1403)
42 TIGR00914 2A0601 heavy metal e 99.3 2.2E-11 4.9E-16 156.6 18.5 179 608-802 859-1041(1051)
43 PRK08578 preprotein translocas 99.3 8.7E-11 1.9E-15 129.6 20.6 160 619-800 126-289 (292)
44 PRK12933 secD preprotein trans 99.3 6.7E-11 1.4E-15 139.2 18.0 150 635-799 445-596 (604)
45 TIGR00915 2A0602 The (Largely 99.3 1.7E-10 3.8E-15 148.0 21.6 181 608-804 851-1035(1044)
46 PRK15127 multidrug efflux syst 99.2 6.7E-10 1.4E-14 142.6 23.3 177 608-800 852-1033(1049)
47 PRK13024 bifunctional preprote 99.2 6.7E-10 1.4E-14 137.0 22.0 171 611-799 562-735 (755)
48 PF02355 SecD_SecF: Protein ex 99.2 9.4E-10 2E-14 113.8 19.5 163 619-798 23-188 (189)
49 PRK13021 secF preprotein trans 99.2 7.6E-10 1.7E-14 121.7 17.6 163 618-797 117-282 (297)
50 PRK10503 multidrug efflux syst 99.2 1.5E-09 3.4E-14 139.2 22.7 175 608-798 845-1024(1040)
51 PRK10555 aminoglycoside/multid 99.2 1.4E-09 3E-14 139.8 21.7 177 608-800 850-1030(1037)
52 PRK09579 multidrug efflux prot 99.1 7.8E-10 1.7E-14 141.6 17.7 178 608-801 825-1007(1017)
53 COG3696 Putative silver efflux 99.1 9.1E-09 2E-13 123.2 23.0 247 585-878 297-554 (1027)
54 PRK10614 multidrug efflux syst 99.1 5.8E-09 1.3E-13 134.0 22.7 175 608-798 831-1010(1025)
55 PRK09577 multidrug efflux prot 99.1 5.5E-09 1.2E-13 134.2 22.1 174 608-797 846-1023(1032)
56 PF00873 ACR_tran: AcrB/AcrD/A 99.1 8.2E-09 1.8E-13 133.2 23.6 174 607-796 842-1020(1021)
57 PRK14726 bifunctional preprote 99.1 4.2E-09 9.1E-14 129.8 19.3 164 619-799 664-830 (855)
58 COG0341 SecF Preprotein transl 98.9 5.9E-08 1.3E-12 106.7 20.8 173 612-802 120-295 (305)
59 PRK08343 secD preprotein trans 98.8 8.6E-08 1.9E-12 110.5 18.6 168 608-791 240-408 (417)
60 COG4258 Predicted exporter [Ge 98.8 2.5E-07 5.4E-12 106.0 20.6 165 611-793 236-402 (788)
61 PRK13023 bifunctional preprote 98.8 4.1E-07 8.9E-12 111.2 22.2 163 619-798 570-735 (758)
62 COG0342 SecD Preprotein transl 98.8 1.2E-07 2.6E-12 111.5 16.0 150 636-800 349-499 (506)
63 PRK12911 bifunctional preprote 98.7 2.3E-07 5.1E-12 115.6 18.8 168 618-802 1225-1400(1403)
64 COG4258 Predicted exporter [Ge 98.7 8.5E-08 1.8E-12 109.8 11.7 153 615-791 630-782 (788)
65 COG0841 AcrB Cation/multidrug 98.6 5.9E-07 1.3E-11 113.9 15.1 174 608-797 830-1007(1009)
66 KOG3664 Predicted patched tran 98.4 1.3E-07 2.8E-12 115.1 4.5 180 608-799 303-502 (999)
67 COG3696 Putative silver efflux 98.2 1.1E-05 2.3E-10 97.6 14.5 177 607-800 841-1022(1027)
68 KOG1935 Membrane protein Patch 98.0 0.00024 5.2E-09 84.8 18.0 134 667-803 943-1077(1143)
69 COG2409 Predicted drug exporte 97.9 0.00037 8.1E-09 89.1 19.9 174 611-798 737-918 (937)
70 PF03024 Folate_rec: Folate re 94.7 0.0087 1.9E-07 61.0 0.0 95 86-188 17-117 (167)
71 KOG1933 Cholesterol transport 92.3 0.036 7.9E-07 70.8 -0.3 166 620-799 1009-1177(1201)
72 TIGR00920 2A060605 3-hydroxy-3 57.5 5.9 0.00013 49.6 2.0 31 370-400 2-32 (886)
73 PRK15081 glutathione ABC trans 50.4 3.6E+02 0.0077 30.3 14.6 26 610-635 76-101 (306)
74 PF03649 UPF0014: Uncharacteri 48.9 3.9E+02 0.0085 29.2 14.1 58 693-752 120-195 (250)
75 PRK15133 microcin C ABC transp 48.7 4.8E+02 0.01 30.2 15.8 50 699-748 227-289 (364)
76 PF05393 Hum_adeno_E3A: Human 48.5 25 0.00054 31.6 3.9 32 295-326 39-70 (94)
77 PRK10352 nickel transporter pe 45.4 4.1E+02 0.0089 30.0 14.1 26 610-635 79-104 (314)
78 PRK10914 dipeptide transporter 44.2 4.5E+02 0.0097 30.0 14.4 30 610-639 77-106 (339)
79 PRK09471 oppB oligopeptide tra 42.0 3.7E+02 0.0081 30.1 13.2 26 726-752 212-238 (306)
80 PF11023 DUF2614: Protein of u 39.3 72 0.0016 30.3 5.6 30 666-695 36-65 (114)
81 PF09946 DUF2178: Predicted me 38.3 1.6E+02 0.0034 28.1 7.9 20 763-782 89-108 (111)
82 COG0601 DppB ABC-type dipeptid 37.7 5.5E+02 0.012 29.1 13.6 50 697-746 180-242 (317)
83 PTZ00370 STEVOR; Provisional 36.9 79 0.0017 34.9 6.3 14 750-763 243-256 (296)
84 PRK02935 hypothetical protein; 36.2 1.2E+02 0.0027 28.4 6.4 31 666-696 37-67 (110)
85 COG3301 NrfD Formate-dependent 35.5 6.7E+02 0.015 28.0 15.4 96 674-771 141-237 (305)
86 PF02754 CCG: Cysteine-rich do 33.7 57 0.0012 28.1 4.0 48 83-130 21-85 (85)
87 COG3030 FxsA Protein affecting 28.8 4E+02 0.0088 27.1 9.3 50 717-770 54-107 (158)
88 PRK10263 DNA translocase FtsK; 27.4 5.7E+02 0.012 34.6 12.6 14 641-654 31-44 (1355)
89 PF05957 DUF883: Bacterial pro 27.1 1.1E+02 0.0023 28.0 4.7 39 365-403 53-91 (94)
90 PF03605 DcuA_DcuB: Anaerobic 25.7 3.1E+02 0.0068 31.6 8.8 17 709-725 64-80 (364)
91 PRK05771 V-type ATP synthase s 24.9 3E+02 0.0065 34.4 9.5 22 674-695 398-419 (646)
92 TIGR02230 ATPase_gene1 F0F1-AT 24.8 75 0.0016 29.7 3.2 19 701-719 77-97 (100)
93 COG4987 CydC ABC-type transpor 24.4 4.4E+02 0.0096 32.0 10.1 24 922-945 368-391 (573)
94 PF04186 FxsA: FxsA cytoplasmi 23.5 5.9E+02 0.013 24.5 9.2 50 717-770 49-102 (119)
95 PF09586 YfhO: Bacterial membr 23.3 1.6E+03 0.035 28.7 16.1 31 768-798 211-241 (843)
96 PF14402 7TM_transglut: 7 tran 20.6 1.9E+02 0.0042 32.4 5.7 46 670-716 194-240 (313)
97 TIGR00245 conserved hypothetic 20.5 1.1E+03 0.024 25.7 12.8 80 675-756 95-193 (248)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=2.5e-156 Score=1473.96 Aligned_cols=858 Identities=56% Similarity=0.930 Sum_probs=735.7
Q ss_pred eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 002221 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN 128 (951)
Q Consensus 53 C~~yg~C~~~~~~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N 128 (951)
|+|||+||++++++++||+||++|++|+++.+++++++||+++ +++|||++|+++|++||++++++++|||||++|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 9999999999899999999999999999999999999999854 479999999999999999999999999999999
Q ss_pred HhhhccccccCCCCCcceeeeeecccCCCeeEEEEEEEEcchhchHHhhccccCcccccchhhhhhcCCC---ccCHHHH
Q 002221 129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW 205 (951)
Q Consensus 129 f~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~~V~~~~~~v~~~~a~~~y~SCk~v~~~~~~~~am~~~gg~---a~~~~~~ 205 (951)
|+++||+||||||||+||+||++.+.+++..|+|+||||+++||+++|||||||++|++|++|||+|||| +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999976556667999999999999999999999999999999999999987 7899999
Q ss_pred HHhhcccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCcCcCCC----CCCcccCCCCCCCCCCCCCCCCCCCCCceEe
Q 002221 206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK 280 (951)
Q Consensus 206 l~flG~~~~~~~~~sPf~inf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sC~~~~~~~~~~~~c~~~ 280 (951)
|+||||++ +++|||||||+++... ..+++|||..+++|||. .++|||+||++ |||.+||+++++++|+++
T Consensus 161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~ 235 (1204)
T TIGR00917 161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL 235 (1204)
T ss_pred HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence 99999984 2689999999987533 34899999999999986 48999999999 999877777767888886
Q ss_pred ecCCccchhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccCCCccchhhhhccccCcchhhhccCCCccccc
Q 002221 281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNR 360 (951)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (951)
. ++|++|+++++|+++++++++++++.+++++++..........++... +.. ..++.. +....+ .
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~-----~- 300 (1204)
T TIGR00917 236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEIN-SSN---NQSDQN-TPQRNE-----G- 300 (1204)
T ss_pred c----CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccc-ccc---cccccc-cccccc-----c-
Confidence 3 579999999999888777776555544333222111110000000000 000 000000 000111 1
Q ss_pred hhhhhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcce
Q 002221 361 IQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI 440 (951)
Q Consensus 361 ~~~~~~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~ 440 (951)
..++++++++++|++||.|++||||++|++++++++++++|+.++++|+||+++|+|+++++++|+++||++|||++|+
T Consensus 301 -~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~ 379 (1204)
T TIGR00917 301 -QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRI 379 (1204)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccce
Confidence 1358999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeccCCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCC-CCccccchhhhhhcCCCCCCC
Q 002221 441 EELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDD 519 (951)
Q Consensus 441 eqiiI~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~y~~~~~~~~~~ 519 (951)
||+||++.+.+.+...++++++|+|+++++++++|++++. ++++++|+|+||.+ ..|.++|+++||+++.+.+++
T Consensus 380 eqvii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~ 455 (1204)
T TIGR00917 380 EQLIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDP 455 (1204)
T ss_pred EEEEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCc
Confidence 9999887422110112469999999999999999998852 36899999999985 689999999999987654432
Q ss_pred c--------CccccccccccccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHH
Q 002221 520 F--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWE 591 (951)
Q Consensus 520 ~--------~~~~~l~~~~~~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE 591 (951)
. +|.+++.+|... +.+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||
T Consensus 456 ~~~~~~~~~~~~~~~~~c~~~---p~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE 531 (1204)
T TIGR00917 456 ENYDDGFGVDYVKYCFECFTS---PESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWE 531 (1204)
T ss_pred ccccccccccHHHhhhccccC---cchhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHH
Confidence 1 245666777654 34699999999999999999988889999999999999986432 23457899999
Q ss_pred HHHHHHHHhhcccccCCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHH
Q 002221 592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLS 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~ 671 (951)
++|.+.++++..+. ...+++++|++++|+++|+++.++.|+++++++|++|++|+++++++++..++++++||+++|++
T Consensus 532 ~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~ 610 (1204)
T TIGR00917 532 KAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGIS 610 (1204)
T ss_pred HHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHH
Confidence 99999998764321 12368999999999999999999999999999999999999999998776667889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhc--CC---------CHHHHHHHHHhh
Q 002221 672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--EL---------PLETRISNALVE 740 (951)
Q Consensus 672 gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~--~~---------~~~e~i~~al~~ 740 (951)
|++++++|+++++|+++|+|+++++++++++|||+|||||||+|+++++|++..+ +. ++++|+++++++
T Consensus 611 gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~ 690 (1204)
T TIGR00917 611 GVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGE 690 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999998789999999999999999999999987532 22 789999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCC
Q 002221 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS 820 (951)
Q Consensus 741 ~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~ 820 (951)
+|+||++|++|+++||++++++++|++|+||+++|+||+++|++++|+|||+|+++.||++.+|.|++||++.++.....
T Consensus 691 ~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~ 770 (1204)
T TIGR00917 691 VGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISA 770 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865432111
Q ss_pred cCCCCCCCcchhHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCC
Q 002221 821 DKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI 900 (951)
Q Consensus 821 ~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~ 900 (951)
.......+++.+.+|++++|+|+|+++++|++|+++|++++++|+|++++|++|+||++++|+|||+++||+.+++||+.
T Consensus 771 ~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~ 850 (1204)
T TIGR00917 771 EKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEV 850 (1204)
T ss_pred ccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhcc
Confidence 11112345578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEe-cCccCccccccccccCcccCCCcchHHHHHhh
Q 002221 901 GPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEVELS 941 (951)
Q Consensus 901 gpPvy~Vv~-~~~~~~~~~~q~~ic~~~~c~~~Sl~~~~~~~ 941 (951)
|||||||++ ++||++ +++|+++||+++|+++||.|..+..
T Consensus 851 gppvy~Vv~~~~dy~~-~~~q~~lc~~~~c~~~sl~~~~~~~ 891 (1204)
T TIGR00917 851 GPPVYFVLKGDYNYTD-SESQNKVCTGGGCNKDSIVNVFNNL 891 (1204)
T ss_pred CCcEEEEEcCCCCCCC-HHHHHHHhcccCCcHHHHHHhhccc
Confidence 999999999 699986 7889999999999999999966554
No 2
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-133 Score=1211.48 Aligned_cols=839 Identities=44% Similarity=0.750 Sum_probs=738.1
Q ss_pred cceeecccCCCCCCCCcccCCCCCC-CCCCChhhHHHHHhhCCCCCC---CCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 002221 51 EFCAMYDICGARSDRKVLNCPYNIP-SVKPDDLLSSKVQSLCPTITG---NVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (951)
Q Consensus 51 ~~C~~yg~C~~~~~~~~~~C~~~~~-a~~~~~~~~~~l~~~Cp~~~~---~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (951)
++|+|||+||+++.++.+||+++.| +++.......++++.||.+.. .+||++.|++.|++|+++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5799999999998888999999998 666666677889999999764 599999999999999999999999999999
Q ss_pred hhHhhhccccccCCCCCcceeeeeecccCCCeeEEEEEEEEcchhchHHhhccccCcccccchhhhhhcC--CCccCHHH
Q 002221 127 RNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG--GGAQNFKD 204 (951)
Q Consensus 127 ~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~~V~~~~~~v~~~~a~~~y~SCk~v~~~~~~~~am~~~g--g~a~~~~~ 204 (951)
+||.++||++|||||||.|++|+++..- .|++++|+++.+|++++|+|||+|+|+++|++||++|+ ++|+|+++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999987532 29999999999999999999999999999999999885 36778999
Q ss_pred HHHhhcccCCCCCCCCceeEEecCCCCCCCCcccCCCCCcCcCCCC-CCcccCCCCCCCCCCCCCCCCCCCCCceEeecC
Q 002221 205 WFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGS-LGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGS 283 (951)
Q Consensus 205 ~l~flG~~~~~~~~~sPf~inf~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~~~sC~~~~~~~~~~~~c~~~~~~ 283 (951)
|++|+|++++. .++||+|+|+.+.+.+..+.+||...++|++.. ++|+|+||++ +|+...+++.+.. ++.+|+
T Consensus 157 ~~~f~g~~~~~--~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~--~c~~~~~~~~~~~--~~~v~~ 230 (1201)
T KOG1933|consen 157 WLEFIGDKNPG--QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPE--TCPASLLLKSPTE--TFVVGG 230 (1201)
T ss_pred HHHHhcCCCcc--CCCcceeccccccCCccceeecccccccCCcccccccchhcchh--hcCccccCCCCcc--ceeecc
Confidence 99999998642 579999999998653345899999999999874 9999999999 9997665554444 567777
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccCCCccchhhhhccccCcchhhhccCCCccccchhh
Q 002221 284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQL 363 (951)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (951)
+..-+...+++++|.+++++|+.+......+.|++....... .+.++.. .
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~~~--------------------------~~~~~~~----~ 280 (1201)
T KOG1933|consen 231 IPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGDDGTP--------------------------VDSSPTS----D 280 (1201)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccccCcc--------------------------ccCCccc----c
Confidence 753344446777777777777777554333333221100000 0001001 1
Q ss_pred hhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEE
Q 002221 364 SIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEEL 443 (951)
Q Consensus 364 ~~~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqi 443 (951)
.+++.+++.+|++||.|+++||..++.+++.+.+.++.|+.+.+++|||+++|..++|++|+|+++|+.|||||||+||+
T Consensus 281 ~~~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi 360 (1201)
T KOG1933|consen 281 FSTETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQI 360 (1201)
T ss_pred hhHHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhh
Confidence 25899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCC--CccccchhhhhhcCCCCCC---
Q 002221 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ--DCATQSVLQYFKMDPKNFD--- 518 (951)
Q Consensus 444 iI~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~--~C~v~S~~~y~~~~~~~~~--- 518 (951)
++.+.+...+.. +.++..+.|++++++|+.++++.... ++++++|+|++|.++ +|.++|+++||++++..++
T Consensus 361 ~l~~~~~~~~~~-~~i~~~~~l~~vldiq~~v~~~~~~~--~~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~ 437 (1201)
T KOG1933|consen 361 ILTAVNTSSEVY-PPILLVEGLELVLDIQNSVKELLTSS--DNISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKL 437 (1201)
T ss_pred eeeccCCccccC-CchHHHHHHHHHHHHHHHHHHhccCC--CccchheeeeeeccCCcchhhhhhHhhhccChhhhhccc
Confidence 999866554433 34999999999999999999987532 378999999999874 5889999999998876532
Q ss_pred -----CcCccccccccccccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHH
Q 002221 519 -----DFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKA 593 (951)
Q Consensus 519 -----~~~~~~~l~~~~~~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~ 593 (951)
-+.|.+|+.+|.+.|. .|+++|++|++|..++||+.++++..|+++++||.++|+..+... .+.+..||++
T Consensus 438 ~~~~~~~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~~-~~~a~~We~~ 513 (1201)
T KOG1933|consen 438 NDSFFMDFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPEL-TDQAVAWEKA 513 (1201)
T ss_pred cccchhhHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcch-hhHHHHHHHH
Confidence 1357789999988765 799999999999999999987778889999999999998764322 5889999999
Q ss_pred HHHHHHhhcccccCCCCeE-EEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHH
Q 002221 594 FVQLAKDELLPMVQSKNLT-LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSG 672 (951)
Q Consensus 594 ~~~~~~~~~~~~~~~~~l~-v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~g 672 (951)
|++.++++..+ .+. ++|++|+|+++||++.+..|+.+++++|++||+|+.+++++.+.+++++++||+.+|+.|
T Consensus 514 f~~~~~~~~~~-----~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy~~mf~yi~~~Lg~~~~~r~vlidSkv~lgi~G 588 (1201)
T KOG1933|consen 514 FVNFAKDYLLP-----HLLAISFMAERSIEDEINRESEGDVITVVISYLVMFLYINLALGHYRSCRRVLIDSKVLLGISG 588 (1201)
T ss_pred HHHHHHHHhhh-----ccchheeeccCccchhhccCCcCCceEEEeehHHHHHHHHHHhccCcccceeeeeceeeccccc
Confidence 99999988643 233 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhc--CCCHHHHHHHHHhhhhhHHHHHHH
Q 002221 673 VVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--ELPLETRISNALVEVGPSITLASL 750 (951)
Q Consensus 673 il~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~--~~~~~e~i~~al~~~g~si~~tsl 750 (951)
++++++++.+++|+++++|++.+.++++|+||+++++|+|++|+++++|+|..+ +++.+++|..++.++||+|+.+++
T Consensus 589 v~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~sl 668 (1201)
T KOG1933|consen 589 VLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSSL 668 (1201)
T ss_pred eEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccchhhhccCcHHHHhHH
Confidence 999999999999999999999999999999999999999999999999998753 388999999999999999999999
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcc
Q 002221 751 SEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPG 830 (951)
Q Consensus 751 T~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~ 830 (951)
.+..+|+++++++||++|.|++++++++++++++|+|.|.+++++|.||++.+|.|++||+|.++.. . ....++
T Consensus 669 se~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~~~~r~d~~~~~~~~~~~-----~-~~~~~~ 742 (1201)
T KOG1933|consen 669 SENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRRLDNRIDIFCCVKPSEEE-----S-VRGNEG 742 (1201)
T ss_pred HhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhhhcCCcceEecccccccc-----c-ccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999876441 1 123337
Q ss_pred hhHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCCCCEEEEEec
Q 002221 831 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN 910 (951)
Q Consensus 831 ~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~gpPvy~Vv~~ 910 (951)
.+.+||+..|+|+++++.+|++++++|.+++.+++++.++|+.|+||++++|+|||+.+||+.+++++++|||||||+|+
T Consensus 743 ~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Syl~dyF~~~~e~l~~GPPvyfv~k~ 822 (1201)
T KOG1933|consen 743 LLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSYLSDYFKNLNEFLNVGPPVYFVLKG 822 (1201)
T ss_pred hHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccchhhhHhhhhhhhcccCCCEEEEecC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CccCccccccccccCcccCCCcchHHHHHhhhcCcccc
Q 002221 911 -YNYSSESRQTNQLCSISQCDSNSLLNEVELSSHFVDIQ 948 (951)
Q Consensus 911 -~~~~~~~~~q~~ic~~~~c~~~Sl~~~~~~~~~~~~~~ 948 (951)
+|++ ++.+||++|++.+|+++|+.|+|+.+++.||..
T Consensus 823 ~~~~s-~~~~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t 860 (1201)
T KOG1933|consen 823 GLDLS-SPKDQNLICSIAGCNDNSLRNQIASAAEAPEQT 860 (1201)
T ss_pred CCCCC-ChhcccceecccccCCcchhhhhhhcccCCcce
Confidence 7776 588999999999999999999999999999865
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=1.2e-84 Score=805.69 Aligned_cols=541 Identities=26% Similarity=0.414 Sum_probs=468.2
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCC-cceeEE
Q 002221 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPF-YRIEEL 443 (951)
Q Consensus 365 ~~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~-~r~eqi 443 (951)
+++.+++++|++||.+|+||||++|+++++++++|++|+.++++||||++||++|+|++++|++||+++|||| ||+||+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeccCCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccC-------------C--CCccc-----
Q 002221 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-------------G--QDCAT----- 503 (951)
Q Consensus 444 iI~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~-------------~--~~C~v----- 503 (951)
||++.++ .|.+||++|.|+++++++++++++.+...+++++|+|+|+||. + ..|.+
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9997421 2446999999999999999999997544578899999999998 2 46999
Q ss_pred --------cchhhhhhcCCC----CCCCc--------------Cccccccc-----------cccccCCchhcccc----
Q 002221 504 --------QSVLQYFKMDPK----NFDDF--------------GGVEHVKY-----------CFQHYTSTESCMSA---- 542 (951)
Q Consensus 504 --------~S~~~y~~~~~~----~~~~~--------------~~~~~l~~-----------~~~~~~~~~~cl~~---- 542 (951)
+|+.+||+++++ ++++. +|.++++. |++.+. .+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~d--~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPAD--PDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCCC--CCCCCccccc
Confidence 888888887766 44432 25566666 875432 469998
Q ss_pred -cCCCC--------------------CCCccCCCcc---CCcccceeEEEEEEEecc---------------cCCcCc-c
Q 002221 543 -FKGPL--------------------DPSTALGGFS---GNNYSEASAFVVTYPVNN---------------AVDREG-N 582 (951)
Q Consensus 543 -~g~pl--------------------~p~~~lGG~~---~~~~~~A~alvit~~l~n---------------~~~~~~-~ 582 (951)
+|+|+ .|++++||++ ++++.+|+|+++||.++| +.+.+. .
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8899999987 457899999999999987 222111 1
Q ss_pred chHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCccccc
Q 002221 583 ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYI 662 (951)
Q Consensus 583 ~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v 662 (951)
..+.+++||++|.+.+++... ...+..+++.+.+|+++|+++.++.++..++++|++||+|++++++++ +++
T Consensus 352 a~~va~~We~~F~~~v~~~~~---~~~~~~~~~fss~SL~del~~~s~~~~~~~~is~~lm~~Ya~~~l~~~-----d~v 423 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSLP---KNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRW-----DCA 423 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cccCCceEEEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 113489999999999987532 123334544445999999999999999999999999999999999986 479
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhh
Q 002221 663 SSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVG 742 (951)
Q Consensus 663 ~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g 742 (951)
+||++||++|++++++|+++++|+++++|+++|+++++++|||+|||||||+|+|+|+|++..+..+.++|++++++++|
T Consensus 424 ~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g 503 (1145)
T TIGR00918 424 KSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTG 503 (1145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998789999999999999999999999998888899999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCC--------
Q 002221 743 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS-------- 814 (951)
Q Consensus 743 ~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~-------- 814 (951)
+||++|++|++++|++|++++||++|.||++++++|+++|++|+|+|||+|++|.||++++|.|++||.+.+
T Consensus 504 ~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~~R~D~~cC~~~p~~~~~~~~ 583 (1145)
T TIGR00918 504 ASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQI 583 (1145)
T ss_pred ceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred --CCccC------------------------------------------CcC---------CCCC---------------
Q 002221 815 --SSYAD------------------------------------------SDK---------GIGQ--------------- 826 (951)
Q Consensus 815 --~~~~~------------------------------------------~~~---------~~~~--------------- 826 (951)
....+ .+. +...
T Consensus 584 ~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 663 (1145)
T TIGR00918 584 EPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDIAGSTRDLLSQFEDSKAACLS 663 (1145)
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 000 0000
Q ss_pred --CCcchhHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCCCCE
Q 002221 827 --RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 904 (951)
Q Consensus 827 --~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~gpPv 904 (951)
...+.+.+|++++|+|||+++++|++|+++|++++++|+||+++|+.|+|+++++|+|||+.+||+.+++||+. +|+
T Consensus 664 ~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~DSyl~~yf~~~~~yF~~-~~v 742 (1145)
T TIGR00918 664 LPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNM 742 (1145)
T ss_pred ccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCCCcHHHHHHHHHHhcCc-Cce
Confidence 01145788999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred EEEEec-CccCccccccccc
Q 002221 905 YFVVKN-YNYSSESRQTNQL 923 (951)
Q Consensus 905 y~Vv~~-~~~~~~~~~q~~i 923 (951)
|+|+++ +||.+ .|+++
T Consensus 743 y~V~~~~~dy~~---~q~~l 759 (1145)
T TIGR00918 743 YAVTQGNFDYPT---QQQLL 759 (1145)
T ss_pred EEEeCCCCCchH---HHHHH
Confidence 999995 99964 35555
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=2.9e-58 Score=572.67 Aligned_cols=494 Identities=32% Similarity=0.531 Sum_probs=405.8
Q ss_pred HhhccceEeccCCcccccCCCChHHHHHHhhhhcc----CCCcceeEEEEEeccCCCCCCCCCCCChHHHHHHHHHHHHH
Q 002221 400 CLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHL----APFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKI 475 (951)
Q Consensus 400 ~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~F----gp~~r~eqiiI~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I 475 (951)
+.|+.++..+.|.. .|.|++++++.|....++-| .+..+. +++.+.+ .++|+|+++.|+++.+++++|
T Consensus 2 ~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~--~~i~a~~-----~~~nlL~~~~l~ei~~l~~~I 73 (798)
T PF02460_consen 2 SSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRF--VIIIAKD-----GGSNLLRPEYLDEILQLDDFI 73 (798)
T ss_pred CCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEE--EEEEEec-----CCCCCcCHHHHHHHHHHHHHH
Confidence 45777888888876 89999999998866544444 344433 2333211 133699999999999999999
Q ss_pred hh-ccccccCccccccccccccCCCCccccchhhhhhc-CCCCCCCcCccccccccccccCCchhcccccCCCCCCCccC
Q 002221 476 DG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKM-DPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTAL 553 (951)
Q Consensus 476 ~~-l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~cl~~~g~pl~p~~~l 553 (951)
.+ ++...+++.++++|+|.++-+..|..++..++... +... ....+.+| ++..+|.++.....+
T Consensus 74 ~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ltyP---------~~~~~~~~~~l~~~~ 139 (798)
T PF02460_consen 74 MNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNRSN-----DNINLTYP---------IMNIFGQPIFLGPNF 139 (798)
T ss_pred HHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhccC-----CceeecCC---------ccCCCCcccccCcee
Confidence 87 56555667899999999975667888877765221 1111 11123333 334567888888889
Q ss_pred CCcc----CCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHhhhh
Q 002221 554 GGFS----GNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRES 629 (951)
Q Consensus 554 GG~~----~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~e~sl~~el~~~s 629 (951)
||++ ++.+.+|++++++|.++... ++..+.+.+||+++.+.+++.. .+.++++++.+++++++|+++.+
T Consensus 140 ggv~~~~~~~~i~~a~a~~l~y~l~~~~---~~~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~~ 212 (798)
T PF02460_consen 140 GGVTTDPDNGNIESAKAVVLTYMLNTDD---EEQEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRNS 212 (798)
T ss_pred cCccccCCcchhheeEEEEEEEEccccc---chhhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHHH
Confidence 9975 23567899999999987432 2345678999999999887643 23479999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhh
Q 002221 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAV 709 (951)
Q Consensus 630 ~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgI 709 (951)
..+++.+.+++++|++|+.+.+.+.+..++.+++||+++|++|++++++|+++++|++.++|+++++ ++.++|||+|||
T Consensus 213 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgI 291 (798)
T PF02460_consen 213 QTLVPLFAIGFALMFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGI 291 (798)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHH
Confidence 9999999999999999999987765545567899999999999999999999999999999999999 578999999999
Q ss_pred cccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 710 GVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (951)
Q Consensus 710 GvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~ 789 (951)
||||+|+++++|++.....+.+||++++++++|+||++|++|++++|++|+++++|++|.||+++|++|+++|++|+|+|
T Consensus 292 GvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f 371 (798)
T PF02460_consen 292 GVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFF 371 (798)
T ss_pred HHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccccccccCCCCccC-CcCC-----CCCCCcchhHHHHHHhhhhhhccccchhhhHHHHHHHHHH
Q 002221 790 VALIVFDFLRAEDKRVDCIPCLKLSSSYAD-SDKG-----IGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLA 863 (951)
Q Consensus 790 palL~l~~rr~~~~r~d~~~c~~~~~~~~~-~~~~-----~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~ 863 (951)
+|+|+++.||+..+|.+++||.+..+.... ..+. ...+....+.++++++|+|++.++++|++++++|++++++
T Consensus 372 ~a~l~l~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~ 451 (798)
T PF02460_consen 372 PAILVLDGRREAAGRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGV 451 (798)
T ss_pred HHHHHHHHHHHHhcccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999999999999999998543221100 0000 0112234678899999999999999999999999999999
Q ss_pred HHHhhcccCCCccccccCCCCCchHHHHHHHHhhc-CCCCCEEEEEec-CccCcccccccccc
Q 002221 864 SIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL-RIGPPLYFVVKN-YNYSSESRQTNQLC 924 (951)
Q Consensus 864 si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l-~~gpPvy~Vv~~-~~~~~~~~~q~~ic 924 (951)
|+||+.+++.|+|+++++|+|||+.+|++..++|+ +.|+|+++++++ .|+++ ++.|+++.
T Consensus 452 siyG~~~i~~gld~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~-~~~~~~l~ 513 (798)
T PF02460_consen 452 SIYGCTQIKEGLDPEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSD-PENQDRLN 513 (798)
T ss_pred HHHhhcccCCCCChhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccc-hHHHHHHH
Confidence 99999999999999999999999999999997776 689999999996 78885 67788874
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=4.9e-57 Score=546.73 Aligned_cols=519 Identities=24% Similarity=0.407 Sum_probs=431.4
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCc---cee
Q 002221 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFY---RIE 441 (951)
Q Consensus 365 ~~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~---r~e 441 (951)
.+++.+.++|+++|.+++||||..++++++++++++.|+..++.+.|+.++|.|.+++++.|.+.+.+.++-++ .+.
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 57888999999999999999999999999999999999888888999999999999999999999999887633 222
Q ss_pred EE-EEEeccCCCCCCCCCCCChHHHHHHHHHHHHHhh-ccccccCccccccccccccCCCCccccchhhhhhcCCCCCCC
Q 002221 442 EL-ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDD 519 (951)
Q Consensus 442 qi-iI~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~-l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~ 519 (951)
+. ++... +++|+++++.++++.++.+.+.+ ++...++...++.|+|.+.-+..|..+.......++...
T Consensus 84 ~~~~~~~~------~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~~--- 154 (868)
T KOG1934|consen 84 IFRFIYLK------DGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTIS--- 154 (868)
T ss_pred eEEEEEec------cCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccCC---
Confidence 21 22221 25689999999999999999974 555556677899999987554555555444444332110
Q ss_pred cCccccccccccccCCchhcccccCCCCCCCccCCCcc----CCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHH
Q 002221 520 FGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 595 (951)
Q Consensus 520 ~~~~~~l~~~~~~~~~~~~cl~~~g~pl~p~~~lGG~~----~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~ 595 (951)
+..-.+.||. +..+|.++.....+||++ ++++.+++++++.|.++-.++ +..+.+.+||+++.
T Consensus 155 -~~~~~lTYP~---------~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~---~~~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 155 -RPQFNLTYPI---------TEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTD---ETEQVAKEWERSLE 221 (868)
T ss_pred -CCceEEecCc---------cccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCc---chHHHHHHHHHHHH
Confidence 0011344543 234566777777888864 346788999999999885432 35678999999998
Q ss_pred HHHHhhcccccCCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHH
Q 002221 596 QLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVL 675 (951)
Q Consensus 596 ~~~~~~~~~~~~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~ 675 (951)
+.+.++. ++..+++++.+...+++|+.|...+-++.+.+++++|++|..+...+ .++++||++||++|+++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f~il~~F~~~t~~~-----~~~v~SKp~lai~g~l~ 292 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGFAILVIFSILTSFM-----IDWVRSKPILAILGVLS 292 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHHHHHHHHHHHhhcc-----hhhhhhhHHHHHHHHHh
Confidence 8887653 34449999999999999999999999999999999999998877533 35799999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002221 676 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLA 755 (951)
Q Consensus 676 v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~ 755 (951)
.++|+++++|++.|+|.+++. +..++|||++||||||+|+++++|+|+.+.++.++|++++++++||||++||+|.+++
T Consensus 293 p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SItITSlTn~ls 371 (868)
T KOG1934|consen 293 PVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSITITSLTNVLS 371 (868)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccC--C---cCCCCCCCcc
Q 002221 756 FAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD--S---DKGIGQRKPG 830 (951)
Q Consensus 756 F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~--~---~~~~~~~~~~ 830 (951)
|++|+++++|+||.||+++++||+++|++|+|||.|+|++.++|+..++++.+.|.....+... . .+.....++.
T Consensus 372 FgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 451 (868)
T KOG1934|consen 372 FGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLEKTEEQKSSSSSSSSSLHNP 451 (868)
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCccccccccccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999998877665433221110 0 0001123445
Q ss_pred hhHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcC-CCCCEEEEEe
Q 002221 831 LLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVK 909 (951)
Q Consensus 831 ~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~-~gpPvy~Vv~ 909 (951)
...++++++|+||++++++|+.+++++++++++++||+.+++.|+|+.+++|+|||+.++++..++++. .|.++-++|.
T Consensus 452 ~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~ 531 (868)
T KOG1934|consen 452 ILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSLRLQEKYFWEYGQQVAVFVN 531 (868)
T ss_pred hHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHHHHHHHHhhccCceEEEEEc
Confidence 677899999999999999999999999999999999999999999999999999999999999999875 5889999998
Q ss_pred c-CccCc
Q 002221 910 N-YNYSS 915 (951)
Q Consensus 910 ~-~~~~~ 915 (951)
+ .|+++
T Consensus 532 np~dl~~ 538 (868)
T KOG1934|consen 532 NPPDLSN 538 (868)
T ss_pred CCccCCC
Confidence 6 77774
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-51 Score=467.55 Aligned_cols=533 Identities=26% Similarity=0.382 Sum_probs=422.2
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEE
Q 002221 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELI 444 (951)
Q Consensus 365 ~~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqii 444 (951)
+...++++++.++|.+|.||-|.+|++++++...|++|+....+|||.++||+..+++..+|..|..+.-....-..|++
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~lgee~~~~~Q~l 133 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPELGEENGLTGQLL 133 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccccchhcCCCceeE
Confidence 57888999999999999999999999999999999999999999999999999999999999998743322223345888
Q ss_pred EEeccCCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCC---------------Cccccchhhh
Q 002221 445 LATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ---------------DCATQSVLQY 509 (951)
Q Consensus 445 I~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~---------------~C~v~S~~~y 509 (951)
|.+.. .+|.|+++++.|.+-+++-.++....+..-++.+++.|+|+||.++ .|.+..|++.
T Consensus 134 IQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlDC 209 (1143)
T KOG1935|consen 134 IQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLDC 209 (1143)
T ss_pred EECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchhh
Confidence 88742 2367899999999999888888876654457899999999999652 6888888876
Q ss_pred hhcCCCCC---------CCcCc--------ccccc------------------------ccccccCCchhcccc-----c
Q 002221 510 FKMDPKNF---------DDFGG--------VEHVK------------------------YCFQHYTSTESCMSA-----F 543 (951)
Q Consensus 510 ~~~~~~~~---------~~~~~--------~~~l~------------------------~~~~~~~~~~~cl~~-----~ 543 (951)
|....+.+ ++..| .+++. -|++ |. ..+|-++ +
T Consensus 210 fWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~-Pl-dp~CP~sApn~~s 287 (1143)
T KOG1935|consen 210 FWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLN-PL-DPECPPSAPNKNS 287 (1143)
T ss_pred hcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCC-CC-CCCCCCCCccccC
Confidence 64321110 00001 00000 1111 00 0122221 1
Q ss_pred CCCCCCC--------------------ccCCCccCC---cccceeEEEEEEEecc-----------c-----CCcCccch
Q 002221 544 KGPLDPS--------------------TALGGFSGN---NYSEASAFVVTYPVNN-----------A-----VDREGNET 584 (951)
Q Consensus 544 g~pl~p~--------------------~~lGG~~~~---~~~~A~alvit~~l~n-----------~-----~~~~~~~~ 584 (951)
.+|.+-. +++||...+ ...+|.|++-+|.+-. + ...+....
T Consensus 288 ~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a~ 367 (1143)
T KOG1935|consen 288 PQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKAA 367 (1143)
T ss_pred CCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHHH
Confidence 1222211 456665432 3566777765555421 0 01111123
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCccccccc
Q 002221 585 KKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISS 664 (951)
Q Consensus 585 ~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~S 664 (951)
+...+|++.|.+.+.+.+. .+.-+++-.+..+++|-+++.++-....++++|++|.+|..+.+.||. +.++|
T Consensus 368 ~vl~awQrnf~~~~~~~~~----~~~~~ih~fsStsldDiL~~Fs~~s~~~iv~gy~lm~~ya~~t~lr~~----~~~~s 439 (1143)
T KOG1935|consen 368 EVLQAWQRNFTKRVYQHLA----NERRQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRWW----DAVQS 439 (1143)
T ss_pred HHHHHHHHHHHHHHHHHhh----hhcceecccccccHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhh----hhhcc
Confidence 4568999999988876553 255678878888999999999998888999999999999999998743 35899
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhH
Q 002221 665 KVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPS 744 (951)
Q Consensus 665 k~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~s 744 (951)
...+|+.|++.|.+|+++++|+..++||.+|.-++.|+|||.|||||||+|.+.|+|++..+. +++++.-|+++|+|
T Consensus 440 q~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~---~~~~~~~lk~tG~S 516 (1143)
T KOG1935|consen 440 QGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL---HEEMGELLKETGMS 516 (1143)
T ss_pred ccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh---HHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999999998654 88999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccC-----
Q 002221 745 ITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD----- 819 (951)
Q Consensus 745 i~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~----- 819 (951)
+++||+.++.+|+.+++.++|++|.||+.+|+-+.++|+..+++|||++++|-||++.+|.|++||....+....
T Consensus 517 vl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~~r~Di~cc~~~~p~~~~~~~~p 596 (1143)
T KOG1935|consen 517 VLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKAGRRDIFCCFRGNPEMATSQSVP 596 (1143)
T ss_pred hhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeEeccCCcccCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874322110
Q ss_pred ------C-----cC--C-----CCC---CCcchhHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHhhcccCCCcccc
Q 002221 820 ------S-----DK--G-----IGQ---RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK 878 (951)
Q Consensus 820 ------~-----~~--~-----~~~---~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~ 878 (951)
+ .+ + ..+ .....+..|.+++|+||++++++|++|++.|.+++++|+||+++++.|+|..
T Consensus 597 ~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg~~allg~slyg~t~~~~GLel~ 676 (1143)
T KOG1935|consen 597 SNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVGFLALLGASLYGMTRSTDGLELT 676 (1143)
T ss_pred cccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHHHHHHHHhhhhheeeecccchhh
Confidence 0 00 0 001 1112378899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHhhcCCCCCEEEEEec-CccCc
Q 002221 879 IVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSS 915 (951)
Q Consensus 879 ~~~P~dSyl~~yf~~~~~~l~~gpPvy~Vv~~-~~~~~ 915 (951)
..+|+++.-.++.+.-++||+ -.|.|.|+++ +||-+
T Consensus 677 DvvP~~t~~~~FL~Aq~kyFs-fY~m~aVtqg~~dyp~ 713 (1143)
T KOG1935|consen 677 DVVPEHTAEAAFLRAQDKYFS-FYPMFAVTQGPFDYPH 713 (1143)
T ss_pred hcCCCCCcHHHHHHHHhhhcc-cchhheeecCCCCccc
Confidence 999999999999999999984 4599999997 88864
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=367.22 Aligned_cols=442 Identities=14% Similarity=0.251 Sum_probs=329.4
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEeccCCCC
Q 002221 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTH 453 (951)
Q Consensus 374 F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~~~~~~ 453 (951)
|+++++|+.+||+.++++.+++++++++|+.+++++++.++ ++|++++..+.++.++++|| ...+.+.|...
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~~~~-~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~ie----- 73 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTET-FLPKDNEEYKNYDRLYKEFG--SGTSLIVVVIE----- 73 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCCccc-cCCCchHHHHHHHHHHHhhC--CCCceEEEEEe-----
Confidence 78999999999999999999999999999999999999664 48999999999999999998 23344555442
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCC-CCCCCcCccccccccccc
Q 002221 454 GNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDP-KNFDDFGGVEHVKYCFQH 532 (951)
Q Consensus 454 ~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~-~~~~~~~~~~~l~~~~~~ 532 (951)
+.|+++++.++.++++++++++++.+. + +.|+..++.... ..+.+.. +....-.
T Consensus 74 --~~dv~~~e~~~~~~~l~~~l~~i~gV~--~-----------------v~Spa~~~~~~~~g~iP~~~--~~i~~~~-- 128 (727)
T COG1033 74 --GDDVFSPEVLEALDSLEERLEEIPGVS--S-----------------VFSPADLLRQVGYGRIPDSD--SKISEVI-- 128 (727)
T ss_pred --CCCCCCHHHHHHHHHHHHHHhcCCCce--e-----------------ccCHHHHhhhccCCCCCCch--hhhHHHH--
Confidence 346999999999999999999987542 1 224444443321 1121100 0010000
Q ss_pred cCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeE
Q 002221 533 YTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT 612 (951)
Q Consensus 533 ~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~ 612 (951)
.. .... .. + ++. ..++...+...+ +....+...+-|+.. + .. ..+++..
T Consensus 129 -----------~~---~~~l---~~-d---~~~-~~i~i~~~~~~~-~~~~~~i~~~~~~~~----e-~~---~~~~~~~ 177 (727)
T COG1033 129 -----------ES---NSLL---SP-D---NTH-TLIIIKLESDKN-DAQKEEIYEEIERII----E-IA---KFPSGVK 177 (727)
T ss_pred -----------hh---hccc---CC-c---ccc-eEEEEecCcchh-hHHHHHHHHhhhhhh----h-hh---cCCCCCe
Confidence 00 0000 01 1 111 223434332111 001111111111111 1 11 1356889
Q ss_pred EEEccchhHHHHHhhhhchhhHHH-HHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 002221 613 LAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (951)
Q Consensus 613 v~f~~e~sl~~el~~~s~~d~~~l-~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G 691 (951)
.+.+|+..+.+.+.+....|+..+ .++.++|++.+.+.+|+++ -++++++++++|++|++|+|+|+|
T Consensus 178 ~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~~------------~~llpL~~~l~sv~~tlG~m~llG 245 (727)
T COG1033 178 LYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSVR------------RALLPLIIVLVSVLWTLGAMGLLG 245 (727)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998864 4677788887777777752 259999999999999999999999
Q ss_pred cccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHH
Q 002221 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 770 (951)
Q Consensus 692 ~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~F 770 (951)
+|++. ++...|.+++|||+||++|++|||.++. .+.+.+||+..|++++|+|++++.+||++||+++.++++|++++|
T Consensus 246 ~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~ 324 (727)
T COG1033 246 IPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEF 324 (727)
T ss_pred CCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99998 7888999999999999999999999985 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhhhhccccch
Q 002221 771 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVK 850 (951)
Q Consensus 771 gl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r 850 (951)
|+.+++|++.+++.+++++|+++.+..+..+ ++. +.+ + ...+.+.+.+.+ .+.+..+++
T Consensus 325 Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~-~~~------~~k----~-------~~~~~~~~~l~~-i~~~~~~~~-- 383 (727)
T COG1033 325 GILLSIGIILAFLSSLTVLPALLILIPKGRK-KRE------EKK----D-------SKKGKLEKRLSK-IAKIIARHP-- 383 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHhhh-hhh------hcc----c-------ccchhHHHHHHH-HHHHhHhhh--
Confidence 9999999999999999999998876654432 111 000 0 011223332332 255566653
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCCCCEEEEEecCcc
Q 002221 851 IAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNY 913 (951)
Q Consensus 851 ~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~gpPvy~Vv~~~~~ 913 (951)
+.++++.+++.++|.||..++++++|.++++|+|++..+.++.+++.+++..|++++++..|.
T Consensus 384 ~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~ 446 (727)
T COG1033 384 VTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDV 446 (727)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCC
Confidence 557777889999999999999999999999999999999999999999999999999997663
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=7e-35 Score=360.75 Aligned_cols=442 Identities=14% Similarity=0.160 Sum_probs=316.8
Q ss_pred ccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEeccCCCCCCCCCCCCh
Q 002221 383 RNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 462 (951)
Q Consensus 383 ~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~~~~~~~~g~~vl~~ 462 (951)
||||.++++++++++++++|+.++++++|+.+ |.|+|+|.++..+.++++||.. ..++.+... +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~~-~~~~d~~~~~~~~~~~~~fg~~--~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTEK-QLPKDFESYKWYHVLQREFGTS--TKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChhh-hCCCCCHHHHHHHHHHHHHCCC--CeEEEEEEE-------eCCCCCH
Confidence 79999999999999999999999999999975 6899999999999999999832 223333331 2359999
Q ss_pred HHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCCC--CCCCcCccccccccccccCCchhcc
Q 002221 463 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPK--NFDDFGGVEHVKYCFQHYTSTESCM 540 (951)
Q Consensus 463 e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~cl 540 (951)
+.++++.++++++++++.+ .+..|+.| +...-.. .+.++ .+.++.-.. ..
T Consensus 72 ~~l~~i~~l~~~l~~~~~V--~~v~s~~~-----------------~~~~~~~~~~~p~~--~~~~~~~~~-------~~ 123 (719)
T TIGR00921 72 PVLDYMRRLEQRLREKPYV--TNVRSAAD-----------------IMRQIPGNFPLPVT--MPEVRPLMS-------EY 123 (719)
T ss_pred HHHHHHHHHHHHHhcCCCc--ceeecHHH-----------------HHHHhcCCCcCCCC--HHHHHHHHH-------hC
Confidence 9999999999999986532 22233333 2211000 01100 001110000 00
Q ss_pred cccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchh
Q 002221 541 SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESS 620 (951)
Q Consensus 541 ~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~e~s 620 (951)
|.... .+...+ .++..+...+++..+ .+...+-.+++.+.+++. ..+++++++++|...
T Consensus 124 -----~~~~~----~~~s~d---~~~~~i~v~~~~~~~-----~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~G~~~ 182 (719)
T TIGR00921 124 -----PRSKE----MFLSKD---HTVAIIIVQLKSDAD-----YKQVVPIYNDVERSLERT----NPPSGKFLDVTGSPA 182 (719)
T ss_pred -----cHHHH----hccCCC---CceEEEEEEecCCCC-----hHHHHHHHHHHHHHHhcc----CCCCCcEEEecCcHH
Confidence 00000 011111 233444455543211 111111112232223321 124578999999988
Q ss_pred HHHHHhhhhchhhH-HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhh
Q 002221 621 IEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIM 699 (951)
Q Consensus 621 l~~el~~~s~~d~~-~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~ 699 (951)
+..++.+....+.. .+.++++++++.+.+.+|++ ..++++++++++++++++|+++++|++++. ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~------------~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~ 249 (719)
T TIGR00921 183 INYDIEREFGKDMGTTMAISGILVVLVLLLDFKRW------------WRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TT 249 (719)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HH
Confidence 88888877777765 45677788877777777663 346889999999999999999999999997 67
Q ss_pred hHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 002221 700 EVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778 (951)
Q Consensus 700 ~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av 778 (951)
.+++.+++|+|+||++|++++|+++ .++.+.++|+.++++++|+++++|++|+++||+++.++++|.+|+||+++++|+
T Consensus 250 ~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv 329 (719)
T TIGR00921 250 LLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGL 329 (719)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 7888999999999999999999987 478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhhhhccccchhhhHHHHH
Q 002221 779 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFV 858 (951)
Q Consensus 779 ~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~~f~ 858 (951)
+++++.++|++|+++.+..++.+..+.. .. . ..++.+.+.+++.+. +.++.+++ +.++++++
T Consensus 330 ~~~~l~~l~~lPall~~~~~~~~~~~~~------~~-~--------~~~~~~~~~~~l~~~-~~~~~r~~--~~vl~v~l 391 (719)
T TIGR00921 330 ITAYLLTLLVLPALLQSIDIGREKVKKE------II-A--------IGGKSSEIEEELSKV-LSITVRHP--VPALVAAL 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccc------cc-c--------ccCcchHHHHHHHHH-HHHHHhCC--cHhHHHHH
Confidence 9999999999999998655443221110 00 0 011123345555543 66666664 34566677
Q ss_pred HHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCC-CCEEEEEecCccC
Q 002221 859 AFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYS 914 (951)
Q Consensus 859 ~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~g-pPvy~Vv~~~~~~ 914 (951)
+++++++++..+++++.|...++|+|++.++.++.++++|+.. .|+++|+++-|..
T Consensus 392 ll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~ 448 (719)
T TIGR00921 392 IITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVR 448 (719)
T ss_pred HHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCC
Confidence 8888999999999999999999999999999999999999765 6899999865543
No 9
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.97 E-value=7.2e-29 Score=296.00 Aligned_cols=360 Identities=16% Similarity=0.256 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEE
Q 002221 366 VQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELIL 445 (951)
Q Consensus 366 ~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI 445 (951)
-.+.+...+.+.+.+.+|||+.++++.++++++..+|..+++.++|..+ +.|+|+|+.++.++.+++||+.+. +.+
T Consensus 364 ~~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~~---~~i 439 (727)
T COG1033 364 KKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSDP---ITI 439 (727)
T ss_pred cchhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCce---EEE
Confidence 3456677889999999999999999999999999999999999999987 589999999999999999999843 233
Q ss_pred EeccCCCCCCCCCCCChHHHHHHHHHHHHHhhccc-cccCccccccccccccCCCCccccchhhhhhcCCCCCCCcCccc
Q 002221 446 ATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRA-NYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVE 524 (951)
Q Consensus 446 ~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~-~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~ 524 (951)
... ..+..||+.++++.++++.+++.+. ++ ...|+.|+- -++.....+ ++ .+
T Consensus 440 ~~~-------~~d~~dp~~l~~md~l~~~l~~~~~~V~--s~~siv~~v-------------k~~~~~~~p--~~---~~ 492 (727)
T COG1033 440 VLE-------AEDVRDPEVLRWMDELEEELEKGEEHVF--SASSIVDLV-------------KQVNGGIIP--DK---SK 492 (727)
T ss_pred EEE-------CCCCCChHHHHHHHHHHHHHHhcceeee--ccchHHHHH-------------HHHhcCCCC--cc---hh
Confidence 321 1236899999999999999988643 11 011122211 111111100 00 00
Q ss_pred cccccccccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhccc
Q 002221 525 HVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLP 604 (951)
Q Consensus 525 ~l~~~~~~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~ 604 (951)
++...+. + |... ....+....-..+-+.+... .++.+.-.+++.+.+++..
T Consensus 493 -~~~i~~~-------~--------~~~~----~~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~-- 543 (727)
T COG1033 493 -IQIILEE-------L--------PESI----KKRYISGDQLNLLGYSLGDT-------QGELEDVGREILRDIEKEN-- 543 (727)
T ss_pred -HHHHHHh-------c--------chhH----hhcccCCCceeeeecccccc-------hhHHHHHHHHHHHHHHhhc--
Confidence 1111110 0 0000 00111111111222222211 1122222233333334322
Q ss_pred ccCCCCeEEEEccchhHHHHHhhhhchhhH-HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 002221 605 MVQSKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 683 (951)
Q Consensus 605 ~~~~~~l~v~f~~e~sl~~el~~~s~~d~~-~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s 683 (951)
.+++++++.+|+..+..++++...++-. ..+++++++++.+.+.+|++ .-++.+++++..++.|+
T Consensus 544 --~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~------------~~~i~~iipi~~~v~~~ 609 (727)
T COG1033 544 --IPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSP------------LKAIIPLIPIAIVVGWN 609 (727)
T ss_pred --CCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhch------------HHhHHHHHHHHHHHHHH
Confidence 3567889999999999999988766644 56788888888888888874 23799999999999999
Q ss_pred HHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC
Q 002221 684 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (951)
Q Consensus 684 ~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~ 763 (951)
+|+|+++|+++++ ++..+..+++|+|+||++|+.+||+++++...++||+.+++.++|++++.+++|++.||+++.+|+
T Consensus 610 ~~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S~ 688 (727)
T COG1033 610 FGLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFSP 688 (727)
T ss_pred HHHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998 688888999999999999999999998643339999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 764 ~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
+|.+++||+.++++++++++++++++||+|.+..+|.
T Consensus 689 f~i~snfGll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 689 FPIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 9999999999999999999999999999999766553
No 10
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.97 E-value=3.5e-28 Score=305.75 Aligned_cols=414 Identities=15% Similarity=0.160 Sum_probs=290.9
Q ss_pred ccchHHHHHHHHHHHHHHhhccceEe-ccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEeccCCCCCCCCCCCC
Q 002221 383 RNPTLVLSLSMALVLLLCLGLIRFEV-ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVT 461 (951)
Q Consensus 383 ~~P~~vl~~~llv~~~l~~Gl~~l~~-etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~~~~~~~~g~~vl~ 461 (951)
||||+++++++++++++......+.. ..+...-+.|+++++++..+.++++|++..+...++++... ++ .++
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~~~~~~~vv~~~------~~-~~~ 73 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLES------NE-RLG 73 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCHHHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCCCCCeEEEEEeC------CC-CCC
Confidence 79999999999998887766655422 12333457899999999999999999876544444444311 11 345
Q ss_pred hHHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCCCCCCCcCccccccccccccCCchhccc
Q 002221 462 ESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541 (951)
Q Consensus 462 ~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~cl~ 541 (951)
++..+.+.++.+++++.. .+ +.++..+|..
T Consensus 74 ~~~~~~~~~~~~~l~~~~----~~-----------------V~~v~~~~~~----------------------------- 103 (910)
T TIGR00833 74 DKDYATYDALIAKLRADI----MH-----------------VISVVDFWGP----------------------------- 103 (910)
T ss_pred HHHHHHHHHHHHHHhcCC----CC-----------------ceecccCCCC-----------------------------
Confidence 555555555555554420 00 1122111110
Q ss_pred ccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhH
Q 002221 542 AFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 621 (951)
Q Consensus 542 ~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~e~sl 621 (951)
|.... +...+ +.++..+...+....+ .....+--+++.+.+++. ..+++++++++|+..+
T Consensus 104 ----p~~~~----~~~s~---d~~~~~i~V~~~~~~~-----~~~~~~~v~~v~~~i~~~----~~~~g~~v~vtG~~~~ 163 (910)
T TIGR00833 104 ----PEAAE----GLRSD---DGKATIIIVNLAGEKG-----QKEAQEAINAVRRIVEQT----NAPDGLTVHVTGPLAT 163 (910)
T ss_pred ----hhhHh----hccCC---CCCEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHhc----CCCCCeEEEEeChHHH
Confidence 00000 00001 1123334444432111 111111122333333332 1356899999999888
Q ss_pred HHHHhhhhchhhHH-HHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCccc----ch
Q 002221 622 EEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS----TL 696 (951)
Q Consensus 622 ~~el~~~s~~d~~~-l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~----~~ 696 (951)
..+..+....|+.. ..++++++++.+.+.+|++ ...+++++++++++++++|+++++|.+. +.
T Consensus 164 ~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS~------------~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~ 231 (910)
T TIGR00833 164 IADILESGDKDMNRITATTGIIVLIILLLVYRSP------------ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNA 231 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 88888777777664 4577778888887777763 2367888899999999999999999863 44
Q ss_pred hhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 002221 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (951)
Q Consensus 697 i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa 775 (951)
+...+++.+++|+|+||++|++++|+++. ++.++++++.++++++|++++++++|++++|+.+.++++|.+|.||+.++
T Consensus 232 ~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a 311 (910)
T TIGR00833 232 QTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCA 311 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 33444567889999999999999999984 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhhhhccccchhhhHH
Q 002221 776 LAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVIS 855 (951)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~~~~r~~vl~ 855 (951)
++++++++..+|++||++.+..||... + .+ ......+++++ .+.++.+++ +.+++
T Consensus 312 ~gvl~a~l~~ltllPall~l~g~~~~~------~---~~-------------~~~~~~~~~~~-l~~~v~r~p--~~vl~ 366 (910)
T TIGR00833 312 VGVLVALLNAVTLTPALLTLEGREGLM------K---PG-------------RKSKIRFIWRR-LGTAVVRRP--WPILV 366 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC------C---Cc-------------ccchHhHHHHH-HHHHHHhcc--HHHHH
Confidence 999999999999999999988765311 0 00 00112223333 366777775 34666
Q ss_pred HHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCC--CCEEEEEec
Q 002221 856 LFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN 910 (951)
Q Consensus 856 ~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~g--pPvy~Vv~~ 910 (951)
+++++++++++++++++++.|....+|+|++.++.++.+++.|+.| .|+++|++.
T Consensus 367 v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~ 423 (910)
T TIGR00833 367 TTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKS 423 (910)
T ss_pred HHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeC
Confidence 7788889999999999999999999999999999999999999877 899999985
No 11
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.96 E-value=1.5e-28 Score=245.33 Aligned_cols=152 Identities=50% Similarity=0.838 Sum_probs=148.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhh
Q 002221 661 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 740 (951)
Q Consensus 661 ~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~ 740 (951)
+|+||+++++.+++.+++|+++++|+++++|++++++..+++||++++||+||+|+++++|++.....+.++|+.+++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999988889999999999999999999999998888889999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc
Q 002221 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLK 812 (951)
Q Consensus 741 ~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~ 812 (951)
+|++++.+++|++++|++++++++|++|+||++++++++++|++++|+|||+|++|.||.+.+|.|++||+|
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~~~~~~~~~~~~ 152 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLLADRLDCFCCIR 152 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 12
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.95 E-value=1.8e-28 Score=289.90 Aligned_cols=168 Identities=22% Similarity=0.391 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhc
Q 002221 631 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 710 (951)
Q Consensus 631 ~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIG 710 (951)
.|+.+++++|++||+|+++.|++++. ++||++||+.|++++++|+++++|+++++|++++.| .+++|||+|+||
T Consensus 60 ~Dv~iv~isy~vmflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaIG 133 (886)
T TIGR00920 60 SDVIVMTITRCIAVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLID 133 (886)
T ss_pred cceEEeeHHHHHHHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhhc
Confidence 47788899999999999999999764 999999999999999999999999999999999995 999999999999
Q ss_pred ccceehhHHHHH-HHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 711 VDNMCILVHAVK-RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (951)
Q Consensus 711 vD~~~~l~~~~~-~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~ 789 (951)
|||+|+|.+. + +..+..+.++||+++|+++||+|+++++|++++|++|++++||++|.||+|++++|+++|++|+|||
T Consensus 134 VDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF 212 (886)
T TIGR00920 134 LSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFF 212 (886)
T ss_pred hhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999554 5 4457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccc
Q 002221 790 VALIVFDFLRAEDKRV 805 (951)
Q Consensus 790 palL~l~~rr~~~~r~ 805 (951)
+|+|+|..+++..+|+
T Consensus 213 ~A~LsL~~~le~~~~h 228 (886)
T TIGR00920 213 PACLSLVLELSRSGRE 228 (886)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999988766665
No 13
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.95 E-value=1.1e-25 Score=283.06 Aligned_cols=258 Identities=15% Similarity=0.165 Sum_probs=212.0
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHH-HHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~-l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
+++++++++|...+..+..+....|+.. +.++++++++.+.+.+|+++ ..++.++++.+++++++|+
T Consensus 246 ~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~------------~~l~~l~~i~~s~~~~~~~ 313 (862)
T TIGR03480 246 DHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPR------------LVFAVLVTLIVGLILTAAF 313 (862)
T ss_pred CCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4689999999998888887777777775 45788888888888888752 3577788999999999999
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCch
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p 765 (951)
+.++|.+++. ++.+.+.+++|+||||++|++++|+++. ++.+..+++.++++++|++++++++|+++||+++.++++|
T Consensus 314 ~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 314 ATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999998 6788899999999999999999999874 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhhhhc
Q 002221 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (951)
Q Consensus 766 ~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 845 (951)
.++.||+++++|++++++..++++|+++.+..++.+ +. .....++.+ .+.++.
T Consensus 393 ~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~--~~--------------------~~~~~~~~~-----~~~~~~ 445 (862)
T TIGR03480 393 GVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRR--RK--------------------PPGYATLAP-----LDAFLR 445 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--cc--------------------CccchhHHH-----HHHHHH
Confidence 999999999999999999999999999987632210 00 001112222 244555
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCCCCEEEE
Q 002221 846 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFV 907 (951)
Q Consensus 846 ~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~gpPvy~V 907 (951)
++ +..+++++++++++++++..+++++.|+..++|+++...+.++.+.+..+.++-.+.+
T Consensus 446 ~~--~~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~v 505 (862)
T TIGR03480 446 RH--RRPVLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEV 505 (862)
T ss_pred hc--cHHHHHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEE
Confidence 54 3345667788889999999999999999999999999999999988887666543333
No 14
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.95 E-value=6.1e-25 Score=272.27 Aligned_cols=352 Identities=13% Similarity=0.170 Sum_probs=251.2
Q ss_pred HHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEec
Q 002221 369 YMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (951)
Q Consensus 369 ~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~ 448 (951)
.+.++++++++++.||||.++++++++++++.+|+.+++++.|+.++ .|+++++++..+.++++||+.....++++.
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~-~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~-- 443 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKF-IPQDLPSLQARKVIESHMGGSHDFATILVK-- 443 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhc-CCCCcHHHHHHHHHHHHhCCCCcceEEEEE--
Confidence 35567889999999999999999999999999999999999998765 799999999999999999975222234432
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCCCCCCCcCccccccc
Q 002221 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (951)
Q Consensus 449 ~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~ 528 (951)
++++.+++.++++.++++++++.... ....+ ..|+.+++........+.. ...+
T Consensus 444 -------~~~~~~~~~l~~l~~l~~~l~~~~~v--~~v~~--------------~~si~~~~~~~~~~~~~~~---~~~~ 497 (719)
T TIGR00921 444 -------ADDVRDPELVRFMDELSRDIKATGVA--ARVFG--------------APSIIDLVKEVEGLPAPER---SALE 497 (719)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHhhcccc--CcccC--------------CCCHHHHHHHhcCCCCCCc---hHHH
Confidence 13488999999999999988875421 11110 1122222221100000000 0000
Q ss_pred cccccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCC
Q 002221 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (951)
Q Consensus 529 ~~~~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~ 608 (951)
.++. ...... ..++++ .+.+...+... ++..+... ++.+.+++ ...+
T Consensus 498 ----------~lp~---~~~~~~----i~~~~~------~v~~~~~~~~~--~~~~~~~~----~~~~~~~~----~~~~ 544 (719)
T TIGR00921 498 ----------PIPE---DEEGGY----ISGGQI------KVAVIQVQLKQ--GEPKVQGR----KILRDVQH----EHPP 544 (719)
T ss_pred ----------hCCH---HHhcce----ecCCce------EEEEEecCCcc--hhHHHHHH----HHHHHHhc----cCCC
Confidence 0000 000000 011111 12222221111 11111112 22222222 1135
Q ss_pred CCeEEEEccchhHHHHHhhhhchhhH-HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 609 KNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 609 ~~l~v~f~~e~sl~~el~~~s~~d~~-~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
+++++..+|...+..++.+....+.. .+.++++++++.+.+.+|++ ..++++++++++++++++|++
T Consensus 545 ~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~------------~~~l~~~i~~~~~~~~~~g~~ 612 (719)
T TIGR00921 545 PGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNP------------IKAVFPLIAIGSGILWAIGLM 612 (719)
T ss_pred CCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 67889999988888888887776655 45677777777777777653 357889999999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHH
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~v 767 (951)
+++|++++. .+.++..+++|+||||++|++++|+++....+.++|+.++++++|++++.+++|+++||++++++++|.+
T Consensus 613 ~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~~~~~ 691 (719)
T TIGR00921 613 GLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIM 691 (719)
T ss_pred HHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 999999997 5677778999999999999999999986447899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002221 768 RVFSMFAALAVLLDFLLQITAFVALIVF 795 (951)
Q Consensus 768 r~Fgl~aa~av~~~~l~~lt~~palL~l 795 (951)
|.||+.++++++++++..++++||+|.+
T Consensus 692 ~~~g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 692 RNFGLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
No 15
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.91 E-value=1.7e-22 Score=227.88 Aligned_cols=193 Identities=22% Similarity=0.384 Sum_probs=165.0
Q ss_pred HHHHHHHHhhcccccCCCCeEEEEccchhHHHHHhhhhchhhHHH-HHHHHHHHHHHHHhhCCCCCCcccccccchhhHH
Q 002221 592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGL 670 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~l~v~f~~e~sl~~el~~~s~~d~~~l-~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl 670 (951)
+++.+.+++.. ..++.+++..|...+..++.+....|...+ .++++++++.+.+.+|++ ..++
T Consensus 108 ~~i~~~i~~~~----~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~------------~~~l 171 (333)
T PF03176_consen 108 KAIRDIIKEAE----KPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSV------------RAAL 171 (333)
T ss_pred HHHHHHHHHhh----ccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHH------------HHHH
Confidence 44545555432 367899999999999999999888887754 567888888888877763 3578
Q ss_pred HHHHHHHHHHHHHHHH----HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHH
Q 002221 671 SGVVLVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSI 745 (951)
Q Consensus 671 ~gil~v~~sv~~s~Gl----~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si 745 (951)
++++++++++++++|+ +.++|++++.++..++..+++|+|+||++|++++|+++. .+.+.++++.++++++|.++
T Consensus 172 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i 251 (333)
T PF03176_consen 172 LPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAI 251 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchh
Confidence 8999999999999999 456678887654455566889999999999999999984 67889999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 746 ~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
+++++|+++||+++.++++|++|+||+.+++|+++++++.+|++||+|.+.+++.
T Consensus 252 ~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 252 LLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999999999999999999999999999999999999999999999999888764
No 16
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.91 E-value=8.8e-22 Score=248.04 Aligned_cols=179 Identities=22% Similarity=0.229 Sum_probs=151.7
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHH-HHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l-~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
.++.+++.+|...+..++.+..+.|+..+ +++++++++++.+.+|++ ...+.+++++++++.+++|+
T Consensus 721 ~~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~------------~~pl~~l~~v~ls~~~s~G~ 788 (910)
T TIGR00833 721 LEPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRAP------------VAPIVLIGSVALSYLWALGL 788 (910)
T ss_pred CCCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999888888864 577888888888877763 34688899999999999999
Q ss_pred HhhcCcc-----cchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 002221 687 FSAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF 761 (951)
Q Consensus 687 ~~~~G~~-----~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~ 761 (951)
+.|++.+ ++..+..+++.+++|+|+||.+|+++||+++... ..++++.++++++|.+|+.+++|++++|+++.+
T Consensus 789 ~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~-g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~ 867 (910)
T TIGR00833 789 SVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPA-GNRTGIIRALGSTGGVITAAGLVFAGTMAALAS 867 (910)
T ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhc-CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 9876543 3333334557788999999999999999998632 357899999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcc
Q 002221 762 IPMPACRVFSMFAALAVLLD-FLLQITAFVALIVFDFLR 799 (951)
Q Consensus 762 s~~p~vr~Fgl~aa~av~~~-~l~~lt~~palL~l~~rr 799 (951)
+++|.+++||+..++||+++ ++..++++||++.+.+|+
T Consensus 868 s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 868 AQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999995 666788899999998765
No 17
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.82 E-value=3.4e-18 Score=215.19 Aligned_cols=424 Identities=15% Similarity=0.177 Sum_probs=282.6
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHHhhccceEe--ccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEeccCC
Q 002221 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEV--ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDT 451 (951)
Q Consensus 374 F~~lG~~va~~P~~vl~~~llv~~~l~~Gl~~l~~--etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~~~~ 451 (951)
+.++|+|++||||.++++++++++++..-...+.. ..+.... .|++.++....+...+.|....+-.-++++...
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l~~~~~~~~~~~-~p~~~~s~~a~~~~~~~f~~~~~~~~~ivv~~~-- 79 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTLEALGQDKSVAL-LPDDAPSLVAMKLIGQAFNESDSSSAAIVVLEA-- 79 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccccc-CCCCchHHHHHHHHhhhccCCCCCceEEEEEcC--
Confidence 34599999999999999999999988887766532 2344433 788998888777666666653333334444321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCCCCCCCcCcccccccccc
Q 002221 452 THGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQ 531 (951)
Q Consensus 452 ~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~~~~ 531 (951)
+.-++++.-....++.+.+++.+. +..++.|.- .. +.....
T Consensus 80 -----~~~l~~~d~~~~~~~v~~L~~~~~----~~~~~~d~~-----------------~~-~~~~~~------------ 120 (937)
T COG2409 80 -----DEGLTDADHALYDKLVDALRADTR----DVNVVQDFV-----------------SD-PLTAEL------------ 120 (937)
T ss_pred -----CCCCChhHHHHHHHHHHHHhhccc----ccceecccC-----------------CC-cccccc------------
Confidence 123444444444455566665432 111222211 00 000000
Q ss_pred ccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCCCCe
Q 002221 532 HYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNL 611 (951)
Q Consensus 532 ~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l 611 (951)
+-.++ |. .+.+ .....-.. + . .+..+. .+...+..++ ...++++
T Consensus 121 --------------~~s~d----~~------a~~~-~~~~~~~~--~-~---~~~~es-~~~v~~~v~~----~~~~~~~ 164 (937)
T COG2409 121 --------------AQSKD----GK------AAYA-QLTLAGYL--G-V---TQANES-VEAVRSIVRQ----LPAPDGL 164 (937)
T ss_pred --------------ccCcc----hh------hhhc-ceeeeecc--C-c---chhHHH-HHHHHHHhcc----cCCCCce
Confidence 00000 00 0000 01111000 0 0 011111 1222222222 1235578
Q ss_pred EEEEccchhHHHHHhhhhchhhHH-HHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 002221 612 TLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (951)
Q Consensus 612 ~v~f~~e~sl~~el~~~s~~d~~~-l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~ 690 (951)
+.+-.|.....+.+...+..+... -.++..++++++.+.+|+ +..++++++.+.+++..+.|+..++
T Consensus 165 ~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s------------~i~a~lpL~t~~~s~~~a~~iv~~l 232 (937)
T COG2409 165 TAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRS------------VITAFLPLITVGLSLLVAQGIVALL 232 (937)
T ss_pred EEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776666666666555553 345666666666666665 3347889999999999999988854
Q ss_pred C----cccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCch
Q 002221 691 G----VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (951)
Q Consensus 691 G----~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p 765 (951)
. ..++.+...+...+.+|+|+||++.++.||+|+. .+.+.++++.++++.+|..++.++.|.+++++.+.+.++|
T Consensus 233 ~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~~a~~~ 312 (937)
T COG2409 233 AYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLSFARLP 312 (937)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHHhcccc
Confidence 3 3344456667778999999999999999999874 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhhhhc
Q 002221 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILS 845 (951)
Q Consensus 766 ~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~ 845 (951)
..+.+++.++++|+++.+..+|+.||+|++.+||..... + . ...+ .++|++ .+.++.
T Consensus 313 ~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~---------~-~--------~~~~----~~~w~~-~~~~v~ 369 (937)
T COG2409 313 FLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPD---------P-K--------RASE----SRFWRR-VGTLVV 369 (937)
T ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCC---------c-c--------hhhh----cchhhh-heeEEe
Confidence 999999999999999999999999999999988753210 0 0 0011 233333 266788
Q ss_pred cccchhhhHHHHHHHHHHHHHhhcccCCCccccccCCCCCchHHHHHHHHhhcCCC--CCEEEEEecCc
Q 002221 846 LWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKNYN 912 (951)
Q Consensus 846 ~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~~~P~dSyl~~yf~~~~~~l~~g--pPvy~Vv~~~~ 912 (951)
++|.. +++..++++++.....+.++.|.+.+..+|.+.+.++.|+.++++|+.| .|+++++++.+
T Consensus 370 ~~P~~--~l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~ 436 (937)
T COG2409 370 RRPLA--ILVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDH 436 (937)
T ss_pred eccHH--HHHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchh
Confidence 87754 3444566677777778899999999999999999999999999999876 69999999633
No 18
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.80 E-value=3.6e-18 Score=215.17 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=130.0
Q ss_pred ccchhHHHHHhhhhchhhH-HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCccc
Q 002221 616 SSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694 (951)
Q Consensus 616 ~~e~sl~~el~~~s~~d~~-~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~ 694 (951)
+|...+..+.......+.. .++++++++++.+.+.+|++ ..++..++++++++++++|+|+++|+++
T Consensus 697 tG~~~~~~~~~~~i~~~~~~~~~~a~~~i~lll~~~frs~------------~~~l~~l~P~~l~~~~~~g~m~~~gi~l 764 (862)
T TIGR03480 697 TGAPVSILESGDTVVGAFLQAFIYALVAITVLLLLTLRRV------------RDVLLVLAPLLLAGLLTVAAMVLLGIPF 764 (862)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH------------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555544444443333333 45678888888888887764 2478889999999999999999999999
Q ss_pred chhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 002221 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (951)
Q Consensus 695 ~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~a 774 (951)
|. .+.++..+++||||||++|++++|+++..... . ...++|.++++|++|+++||++++++++|.+++||+.+
T Consensus 765 ~~-~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~----~--~~~~~g~ai~~saltt~~gf~~l~~s~~~~~~~~G~~~ 837 (862)
T TIGR03480 765 NF-ANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN----L--LQSSTARAVFFSALTTATAFGSLAVSSHPGTASMGILL 837 (862)
T ss_pred cH-HHHHHHHHHHhhhhhhHHHHHHHHHHhccchh----H--HHhhhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 97 56777778899999999999999998753211 1 12468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002221 775 ALAVLLDFLLQITAFVALI 793 (951)
Q Consensus 775 a~av~~~~l~~lt~~palL 793 (951)
++|++++++..++++||+|
T Consensus 838 ~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 838 SLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988
No 19
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.77 E-value=5.9e-16 Score=193.84 Aligned_cols=373 Identities=17% Similarity=0.168 Sum_probs=231.7
Q ss_pred HHHHHHhchhhhccchHH--HHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEec
Q 002221 371 SNFYRKYGKWVARNPTLV--LSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (951)
Q Consensus 371 ~~~F~~lG~~va~~P~~v--l~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~ 448 (951)
+.+..+|+.|+.+.+..+ +++.++..++..+|..+++..-|+.++ +|+||+..+-.+..|++|.+.+..-.+++..
T Consensus 422 ~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~- 499 (798)
T PF02460_consen 422 RFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVVVNN- 499 (798)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEEecC-
Confidence 334456888888776444 555566666788899999999999876 7999999998888888887654322233221
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCCCCCCCcCccccccc
Q 002221 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (951)
Q Consensus 449 ~~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~~~~~~~~~l~~ 528 (951)
.+|.-+++..+++.++.+++++.+.....+. ...-+.+-.+|.........+++..+....
T Consensus 500 -------~~d~~~~~~~~~l~~lv~~fe~~~~~~~~~~------------t~~WL~~y~~~l~~~~~~~~~~~~~~~~~~ 560 (798)
T PF02460_consen 500 -------PPDYSDPENQDRLNSLVQEFENSPYSIGNNS------------TSFWLRDYLNFLNSINSSFQDDNDKEFFYN 560 (798)
T ss_pred -------CCCccchHHHHHHHHHHHHHhcccccccccc------------chhhHHHHHHHHhhccccccccccceeeec
Confidence 2458889999999999888887643211110 001112222333220111111000000000
Q ss_pred cccccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccCC
Q 002221 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (951)
Q Consensus 529 ~~~~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~ 608 (951)
.++.... .+.+ ........+. ..+++-..-.+..++...++..+ .++..++.+++.+.++++
T Consensus 561 ~l~~FL~----~~~~-~~~~~di~~~-~~~~~~~~I~a~rf~~~~~~~~~-----~~~~~~~~~~~R~i~~~~------- 622 (798)
T PF02460_consen 561 LLPEFLN----SPEY-RHYSNDIKFD-DSDNDTTQISAFRFTTQLKNLSD-----WSDRIEAMKDWRQIADKY------- 622 (798)
T ss_pred cchhhhc----cccc-cccccccccc-cccCCccceeeEEEEEEccCCCC-----HHHHHHHHHHHHHhhhcc-------
Confidence 0000000 0000 0111111111 00111222345555555444321 111122223333333322
Q ss_pred CCeEEE-EccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 609 KNLTLA-FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 609 ~~l~v~-f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
+.+++. |+..-...|........-+..++++.+.|++...+.+.+. ..+++.++.++.-.+..+|+|
T Consensus 623 ~~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~------------~~~~~~~~~i~~i~~~v~G~m 690 (798)
T PF02460_consen 623 SDFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNP------------RSSLIVTLSILSIDVGVIGFM 690 (798)
T ss_pred eecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccc------------hhHHHHHHHHHHHHHHHHHhh
Confidence 223433 3333334444444444444557788888887766666553 234555566666666788999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHH
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~v 767 (951)
++.|+++++ ++.+.-.+.+|++||++.|+.++|.+.... ++.+|+.+|++++|+|++.++++|++|.+.+++++...+
T Consensus 691 ~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~ 768 (798)
T PF02460_consen 691 SLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIF 768 (798)
T ss_pred hccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999998 577777888999999999999999987544 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002221 768 RVFSMFAALAVLLDFLLQITAFVALIVFD 796 (951)
Q Consensus 768 r~Fgl~aa~av~~~~l~~lt~~palL~l~ 796 (951)
+.|.-...+.+++.++-.+.++|++|++.
T Consensus 769 ~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 769 RVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999863
No 20
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.66 E-value=1.9e-14 Score=183.92 Aligned_cols=260 Identities=15% Similarity=0.138 Sum_probs=181.5
Q ss_pred CCCeEEEEccchh--HHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f~~e~s--l~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++|+++.+.++.+ +++.++.. ...+.++++++++.+++.||+++ .+++..+++.++++++++
T Consensus 312 P~g~~~~~~~d~~~~i~~~~~~~----~~~~~~~~~lv~~vl~l~l~~~r------------~~li~~~~ip~s~~~~~~ 375 (1025)
T PRK10614 312 PAAIDLQIAQDRSPTIRASLEEV----EQTLAISVALVILVVFLFLRSGR------------ATLIPAVAVPVSLIGTFA 375 (1025)
T ss_pred CCCcEEEEeecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 5678887776543 33333332 22356667777777777777642 267778899999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCc
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~ 764 (951)
++.++|+++|. ++.+...+.+|+.|||++++++++++. .++.++.+|+.++.++++.+++.+++|++++|+.+.+.+-
T Consensus 376 ~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~stltti~~f~Pl~~~~g 454 (1025)
T PRK10614 376 AMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454 (1025)
T ss_pred HHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999997 566667788999999999999888776 4678999999999999999999999999999999887654
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhh
Q 002221 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (951)
Q Consensus 765 ---p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya 841 (951)
..++.|++..++++++++++++|++|+++++..++....+. . . ....+..+.+ +++.|.
T Consensus 455 ~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~--------~-~--------~~~~~~~~~~-l~~~Y~ 516 (1025)
T PRK10614 455 LPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQ--------K-R--------LRGFGRMLVA-LQQGYG 516 (1025)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc--------c-c--------hhhHHHHHHH-HHHHHH
Confidence 56999999999999999999999999998865432110000 0 0 0000011111 233343
Q ss_pred h---hhccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHHHHHH---HHhhcCCCCCE
Q 002221 842 T---ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGYFNN---ISEHLRIGPPL 904 (951)
Q Consensus 842 ~---~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~yf~~---~~~~l~~gpPv 904 (951)
+ +++++ |+.+++++++++++++++..++...+-|. ..+|+++.+.+-.+. +++.+...|.+
T Consensus 517 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V 592 (1025)
T PRK10614 517 RSLKWVLNH--TRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAV 592 (1025)
T ss_pred HHHHHHHhc--hHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCe
Confidence 3 44554 44566677788888888877777666553 345777766543333 34444333444
No 21
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.62 E-value=9.7e-14 Score=177.53 Aligned_cols=257 Identities=16% Similarity=0.141 Sum_probs=179.4
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++++++.+.++.+ +.+++..+.-...++++++++++.+.+.||+++ .+++.++++.+++++++|++
T Consensus 318 p~g~~~~~~~d~~--~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r------------~~li~~~~iP~si~~t~~~~ 383 (1037)
T PRK10555 318 PHGLEYKVAYETT--SFVKASIEDVVKTLLEAIALVFLVMYLFLQNFR------------ATLIPTIAVPVVLMGTFSVL 383 (1037)
T ss_pred CCCcEEEEeeccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH------------HHHHHHhhhHHHHHHHHHHH
Confidence 4577777766543 112222222233466788888888888888753 25778888999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCc-
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~- 764 (951)
+++|+++|. ++.+.+.+.+|+.|||++|+++++++.. .+.++.+++.++.++++.+++.+++|++++|+...+.+-
T Consensus 384 ~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~stltti~~flPl~~~~G~ 462 (1037)
T PRK10555 384 YAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGT 462 (1037)
T ss_pred HHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999998 5778888889999999999999998864 588999999999999999999999999999998876522
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHH---HHHh
Q 002221 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MKEV 839 (951)
Q Consensus 765 --p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 839 (951)
...+.|++..+.++++++++++|+.|+++.+..++...++. .. ......++.+. +++.
T Consensus 463 ~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~~~~~~~~~~----------~~-------~~~~~~~~~~~~~~~~~~ 525 (1037)
T PRK10555 463 TGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLKKGEH----------HG-------QKGFFGWFNRMFNRNAER 525 (1037)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc----------cc-------chhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999865543211000 00 00000011121 2344
Q ss_pred hhhhh---ccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHHH---HHHHHhhc
Q 002221 840 HATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGY---FNNISEHL 898 (951)
Q Consensus 840 ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~y---f~~~~~~l 898 (951)
|.+.+ +++ |+.++++++++++++++....+..++-|. ..+|+++.+.+- .+.+++++
T Consensus 526 Y~~~L~~~l~~--~~~~l~~~~~~~~~~~~l~~~l~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~~e~~l 597 (1037)
T PRK10555 526 YEKGVAKILHR--SLRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYY 597 (1037)
T ss_pred HHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCcCCcccCCeEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55444 343 33455555666677777666666666432 468888855444 34455554
No 22
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.62 E-value=2.9e-13 Score=170.36 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhccc
Q 002221 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (951)
Q Consensus 633 ~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD 712 (951)
+..+.++.+.||+..++.+++. +.+++.++++++.++..+|+|++.|+++|. ++.+.-.+.+|+|||
T Consensus 968 ~~~l~~al~~~fvV~~lll~~~------------~~a~iv~l~v~~i~v~v~G~M~lwgI~Lna-VS~vnLimsIGisVe 1034 (1145)
T TIGR00918 968 LLSISVVLACTFLVCALLLLNP------------WTAGLIVLVLALMTVELFGMMGLLGIKLSA-IPVVILIASVGIGVE 1034 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHcch------------HHHHHHHHHHHHHHHHHHHHHHHHcCCccH-HHHHHHHHHHhhhhh
Confidence 3345567788888877777653 235667788888999999999999999998 577778888999999
Q ss_pred ceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 713 NMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP-ACRVFSMFAALAVLLDFLLQITAFVA 791 (951)
Q Consensus 713 ~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p-~vr~Fgl~aa~av~~~~l~~lt~~pa 791 (951)
++.|+.++|... ..++++|+.+||+++|.|++.+++|+++|+++++++++. .++.|+.+.++.|+++++-.++++|.
T Consensus 1035 fsaHI~~~F~~~--~~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPV 1112 (1145)
T TIGR00918 1035 FTVHIALGFLTA--IGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPV 1112 (1145)
T ss_pred hhHHHHHHHHhc--CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999854 235799999999999999999999999999999999987 78999999999999999999999999
Q ss_pred HHhhhhccccc
Q 002221 792 LIVFDFLRAED 802 (951)
Q Consensus 792 lL~l~~rr~~~ 802 (951)
+|++.+.+.+.
T Consensus 1113 LLS~~Gp~~~~ 1123 (1145)
T TIGR00918 1113 LLSMFGPEPEV 1123 (1145)
T ss_pred HHHhcCCcccc
Confidence 99998876543
No 23
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.62 E-value=1.3e-13 Score=175.91 Aligned_cols=261 Identities=17% Similarity=0.206 Sum_probs=177.4
Q ss_pred CCCeEEEEccchh--HHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f~~e~s--l~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++++++.+.++.+ +++.++.. ...+..+++++++.+++.|++++ .+++..+++.++++++++
T Consensus 311 P~g~~~~~~~d~~~~i~~~~~~~----~~~l~~~~ilv~lvl~lfl~~~r------------~~l~~~~~IP~s~~~~~~ 374 (1017)
T PRK09579 311 PPNLKVSIAYDATLFIQASIDEV----VKTLGEAVLIVIVVVFLFLGALR------------SVLIPVVTIPLSMIGVLF 374 (1017)
T ss_pred CCCcEEEEEecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 4577777665433 33333332 22355566666666666666643 256677889999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC-
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 763 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~- 763 (951)
++.++|+++|. ++.+...+.+|+.|||++|+++++++. .++.++.+|+.++.++.+.|+++|++|++++|+.+.+.+
T Consensus 375 ~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~stlTti~~f~Pl~f~~g 453 (1017)
T PRK09579 375 FMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTG 453 (1017)
T ss_pred HHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998 566666777899999999999998876 468899999999999999999999999999999886643
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhh
Q 002221 764 --MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (951)
Q Consensus 764 --~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya 841 (951)
-+.++.|++..++++++++++++|+.|+++.+..++.. +.+ .. ....+..+.+ +.+.|.
T Consensus 454 ~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~~~~~--~~~---------~~-------~~~~~~~~~~-l~~~Y~ 514 (1017)
T PRK09579 454 LTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRHEE--NPS---------GL-------AHRLDRLFER-LKQRYQ 514 (1017)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccc---------hh-------hHHHHHHHHH-HHHHHH
Confidence 26789999999999999999999999999886543211 000 00 0000111222 233444
Q ss_pred hhh---ccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHH---HHHHHHhhcCCCCCEEE
Q 002221 842 TIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRIGPPLYF 906 (951)
Q Consensus 842 ~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~---yf~~~~~~l~~gpPvy~ 906 (951)
+++ +++ |..++++++++++++.+....+..++=|. ..+|.++.+.+ ..+.+++.+..-|.++-
T Consensus 515 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~~ 592 (1017)
T PRK09579 515 RALHGTLNT--RPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYS 592 (1017)
T ss_pred HHHHHHHcc--hHHHHHHHHHHHHHHHHHHHhCCcCcCCccCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 433 333 34455556666667766666666665443 56888876543 33555555544455433
No 24
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.61 E-value=1.2e-13 Score=176.82 Aligned_cols=256 Identities=14% Similarity=0.194 Sum_probs=179.5
Q ss_pred CCCeEEEEccchh--HHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f~~e~s--l~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++++++.+.++.+ +++.++. ....++++++++++.+.+.|++++ .+++..+++.++++.+++
T Consensus 318 P~g~~~~~~~d~~~~i~~~~~~----~~~~~~~a~~lv~lvl~l~l~s~r------------~~li~~~~iP~s~~~~~~ 381 (1044)
T TIGR00915 318 PQGMKYVYPYDTTPFVSASIEE----VVHTLIEAIVLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFA 381 (1044)
T ss_pred CCCCeEEEEEeccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 5677777665432 3333332 344566777777777777777753 257777888999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH--hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~--~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~ 763 (951)
++.++|+++|. ++.+...+.+|+.|||++++++++++. .++.++.+++.++.++++++++.|++|++++|+.+.+.+
T Consensus 382 ~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~ttltti~~flPl~~~~ 460 (1044)
T TIGR00915 382 VLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1044)
T ss_pred HHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 566667788899999999999998875 358899999999999999999999999999999887653
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHH---HH
Q 002221 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARY---MK 837 (951)
Q Consensus 764 ---~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~---~~ 837 (951)
-+..+.|++..+.+++++++.+++++|+++.+..+....... . .. ......++.++ +.
T Consensus 461 G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~--------~-~~-------~~~~~~~~~~~~~~l~ 524 (1044)
T TIGR00915 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEH--------H-EF-------KGGFFGWFNRMFDRST 524 (1044)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--------c-cc-------cchHHHHHHHHHHHHH
Confidence 567899999999999999999999999998765432110000 0 00 00000111121 23
Q ss_pred Hhhhhhh---ccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHHH---HHHHHhhc
Q 002221 838 EVHATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGY---FNNISEHL 898 (951)
Q Consensus 838 ~~ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~y---f~~~~~~l 898 (951)
+.|.+++ +++ |+.++++++++++++++....++.++-|. ..+|.++.+.+- .+.+++++
T Consensus 525 ~~y~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l 598 (1044)
T TIGR00915 525 HGYENGVGKILKR--RGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYL 598 (1044)
T ss_pred HHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3455544 333 44456666677777877777777665442 457888865443 34555555
No 25
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.59 E-value=1e-12 Score=161.45 Aligned_cols=373 Identities=17% Similarity=0.189 Sum_probs=233.1
Q ss_pred HHHHHhchhhhccchH--HHHHHHHHHHHHHhhccceEeccCCcccccCCCChHHHHHHhhhhccCCCcceeEEEEEecc
Q 002221 372 NFYRKYGKWVARNPTL--VLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449 (951)
Q Consensus 372 ~~F~~lG~~va~~P~~--vl~~~llv~~~l~~Gl~~l~~etd~~~lw~p~~s~a~~e~~~f~~~Fgp~~r~eqiiI~~~~ 449 (951)
.+..+|+.|+.+.... ++++.++-..++.+|..+++..-||.++ ++.||+..+..+..+++|-+.+..-+++|..
T Consensus 456 ~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl-~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~n-- 532 (868)
T KOG1934|consen 456 FFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKL-LPEDSPLVKSLRLQEKYFWEYGQQVAVFVNN-- 532 (868)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHc-ccccCcchHHHHHHHHHhhccCceEEEEEcC--
Confidence 4445667777655433 3444455566788899999999999999 6899999888777777776654333445432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhccccccCccccccccccccCCCCccccchhhhhhcCCCCC-C-CcCcccccc
Q 002221 450 DTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNF-D-DFGGVEHVK 527 (951)
Q Consensus 450 ~~~~~~g~~vl~~e~L~~~~~lq~~I~~l~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~y~~~~~~~~-~-~~~~~~~l~ 527 (951)
.+|+-+++.++++.++-++.+..+... |+.. ..+-+.+-.+|........ + ++.+..++.
T Consensus 533 ------p~dl~~~~~~~~~~~~~~~fE~~~~~~-G~~s-----------T~~wlr~y~~~~~~~~~~~~~~~~~~~~~~~ 594 (868)
T KOG1934|consen 533 ------PPDLSNPENRDNLNELVSEFESTPYSM-GRES-----------TKFWLREYLNFLFEKNAELEDNDDEFYDHLY 594 (868)
T ss_pred ------CccCCCHHHHHHHHHHHHHHhcCCccc-Cccc-----------chhHHHHHHHHHhhhcccccCCCcchhhhhH
Confidence 246888999999999999888875321 1110 1111222223211111111 1 111111111
Q ss_pred ccccccCCchhcccccCCCCCCCccCCCccCCcccceeEEEEEEEecccCCcCccchHHHHHHHHHHHHHHHhhcccccC
Q 002221 528 YCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQ 607 (951)
Q Consensus 528 ~~~~~~~~~~~cl~~~g~pl~p~~~lGG~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~ 607 (951)
.-+. -.+.+ .+-.....++.-+ ++-..-.+...++...+..+. .++.+..+.|++.. ++
T Consensus 595 ~~fl-------~~~~~-~~~~~di~~~~~~-~~~~~i~~f~f~~~~~~~~~~-~~~~~~~~~~R~ia----~~------- 653 (868)
T KOG1934|consen 595 ESFL-------KSPEF-SFWRNDIVFDNKS-DEETIIFAFRFTIGLTNLTKW-NERTRLLETWRKIA----DE------- 653 (868)
T ss_pred HHHh-------ccccc-ccCccceEeccCC-CCCceEEEEEEEEEEeccCCH-HHHHHHHHHHHHHH----hh-------
Confidence 1000 00111 1111122222111 111122344455555553221 11223334444332 22
Q ss_pred CCCeEEE-EccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLA-FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 608 ~~~l~v~-f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
.+.++++ |.-.....|.+......-+..++++++.|++...+.+.+. ...+...++++.--+..+|.
T Consensus 654 ~~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~------------~~~~~it~si~SI~~GV~G~ 721 (868)
T KOG1934|consen 654 YSDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPNP------------LCVFWITLSIVSINIGVFGF 721 (868)
T ss_pred ccCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHhheeehHhhh
Confidence 2344554 3333445677776666666678888888888777665552 11122222222222346688
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchH
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~ 766 (951)
|++-|+.+++ ++++.-.+-+|-.||++-|+.-+|.+.....++.+|+..|++.+|.|++-++++|++|.+.+++++...
T Consensus 722 lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V~sYm 800 (868)
T KOG1934|consen 722 LSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFVPSYM 800 (868)
T ss_pred hHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhchHHH
Confidence 8889999999 566666777777899999999998876654699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 767 vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
++.|.-..-+.+.+.++=.+.++|.+|++..+.
T Consensus 801 v~vF~KTv~LVv~~GllHGLv~LPviLs~f~~~ 833 (868)
T KOG1934|consen 801 VQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPI 833 (868)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999987653
No 26
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.59 E-value=2.3e-13 Score=173.96 Aligned_cols=261 Identities=14% Similarity=0.177 Sum_probs=180.5
Q ss_pred CCCeEEEEccch--hHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSES--SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f~~e~--sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++|+++.+.++. .+++.++. -...++++++++++.+++.||+++ .+++..+.+.++++++++
T Consensus 321 P~g~~~~~~~d~~~~i~~~i~~----~~~~l~~~~~lv~~vl~lfl~~~r------------~~~i~~~~ip~s~~~~~~ 384 (1040)
T PRK10503 321 PKSVKVTVLSDRTTNIRASVDD----TQFELMLAIALVVMIIYLFLRNIP------------ATIIPGVAVPLSLIGTFA 384 (1040)
T ss_pred CCCcEEEEEecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcchH------------HHHHHHhhhHHHHHHHHH
Confidence 567777655443 34444443 233455666666666667777643 257778889999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCc
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~ 764 (951)
++.++|+++|. ++.+...+.+|+.|||++++++++++. .++.++.+++.++.++++.+++.+++|++++|+...+++-
T Consensus 385 ~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~tltti~~f~Pl~~~~g 463 (1040)
T PRK10503 385 VMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463 (1040)
T ss_pred HHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998 456666777889999999999998876 4677888999999999999999999999999998887664
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhh
Q 002221 765 ---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA 841 (951)
Q Consensus 765 ---p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya 841 (951)
..++.|++..++++++++++++|++|+++....++...++.+ .. ....+.++.+ +++.|.
T Consensus 464 ~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~---------~~-------~~~~~~~~~~-l~~~y~ 526 (1040)
T PRK10503 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQN---------RF-------SRASERMFDR-VIAAYG 526 (1040)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc---------hH-------HHHHHHHHHH-HHHHHH
Confidence 679999999999999999999999999987544321100000 00 0000112222 233455
Q ss_pred hhh---ccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHHH---HHHHHhhcCCCCCE
Q 002221 842 TIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGY---FNNISEHLRIGPPL 904 (951)
Q Consensus 842 ~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~y---f~~~~~~l~~gpPv 904 (951)
+++ +++ |+.++++++++++++++....+..++=|. ..+|.++.+.+. .+.+++.+...|.+
T Consensus 527 ~~l~~~l~~--~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v 602 (1040)
T PRK10503 527 RGLAKVLNH--PWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAV 602 (1040)
T ss_pred HHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCe
Confidence 544 333 45566677777788887777777665442 456777765443 34555655433433
No 27
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.58 E-value=3e-13 Score=173.03 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=142.0
Q ss_pred CCCeEEEEccchh--HHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f~~e~s--l~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++|+++...++.+ +++.++.. ...++++++++++.+.+.|++++ .+++.++++.++++.+++
T Consensus 317 P~g~~~~~~~d~~~~i~~~i~~~----~~~l~~~~ilv~lvl~l~l~s~r------------~~liv~~~iP~s~~~~~~ 380 (1032)
T PRK09577 317 PPGVKYQIPYETSSFVRVSMNKV----VTTLIEAGVLVFLVMFLFMQNFR------------ATLIPTLVVPVALLGTFG 380 (1032)
T ss_pred CCCcEEEEEecCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH
Confidence 5677777665543 33333332 23456677777777777777753 267778889999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~ 763 (951)
++.++|+++|. ++.+...+.+|+.|||++++++++++.. .+.++.+|+.++.+++++|++.+++|++++|+.+.+.+
T Consensus 381 ~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~tlt~~~~flPl~~~~ 459 (1032)
T PRK09577 381 VMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459 (1032)
T ss_pred HHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 5777788889999999999999998863 58899999999999999999999999999999877653
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002221 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 764 ---~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~r 798 (951)
-...+.|++..++++++++++++|+.|+++....+
T Consensus 460 g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~ 497 (1032)
T PRK09577 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLK 497 (1032)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44689999999999999999999999999886554
No 28
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.57 E-value=6.5e-13 Score=170.04 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=140.9
Q ss_pred CCCeEEEEccchh--HHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f~~e~s--l~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++++++.+..+.+ +++.+.. ....++++++++++.+++.||+++ .+++..+++.++++.+++
T Consensus 318 P~g~~i~~~~d~~~~i~~~~~~----~~~~l~~~~~lv~~vl~l~l~~~r------------~~li~~~~iP~sl~~~~~ 381 (1049)
T PRK15127 318 PSGLKIVYPYDTTPFVKISIHE----VVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFA 381 (1049)
T ss_pred CCCceEEEEecchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHH
Confidence 5678877665433 2222222 233466788888888888888753 257778888999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc-
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI- 762 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s- 762 (951)
++.++|+++|. ++.+...+.+|+.|||++++++++++.. .+.++.+|+.++.++++++++.+++|++++|+.+.+.
T Consensus 382 ~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~tltt~~~f~Pl~~~~ 460 (1049)
T PRK15127 382 VLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 460 (1049)
T ss_pred HHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999998 5667777889999999999999998753 5889999999999999999999999999999988874
Q ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002221 763 --PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 763 --~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~r 798 (951)
.-..++.|++..+.++++++++++|+.|++..+..+
T Consensus 461 G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~l~ 498 (1049)
T PRK15127 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLK 498 (1049)
T ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334679999999999999999999999999876543
No 29
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.55 E-value=3.8e-13 Score=172.96 Aligned_cols=264 Identities=16% Similarity=0.198 Sum_probs=182.5
Q ss_pred CCCeEEEE--ccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAF--SSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~f--~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++++++.. .....+++.++.. ...++++.++.++.+.++||++| .+++..+.+.+|++.++.
T Consensus 311 p~~~~~~~~~d~s~~i~~~i~~l----~~~~~~g~~lv~~vl~lfl~~~r------------~~liv~~~IPisi~~t~~ 374 (1021)
T PF00873_consen 311 PEGLEITIVYDQSEYIEESINNL----ISNLLIGIILVVLVLLLFLRNWR------------SALIVALSIPISILGTFI 374 (1021)
T ss_dssp STTEEEEEEEESHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTSHH------------HHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEechHHHHHHHHHH----HHHHHHHhHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHHHHH
Confidence 45766654 4434455555543 33456677777777777778753 267777888999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hc-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~-~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~ 763 (951)
+|.++|+++|. ++..--.+.+|+=|||++++++..+|. .. +.++.+++.++.++++.|++.+++|++++|+.+.+.+
T Consensus 375 ~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~Pl~f~~ 453 (1021)
T PF00873_consen 375 FMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFLPLLFMP 453 (1021)
T ss_dssp HHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGSB
T ss_pred HHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999997 455555566677799999999988765 35 9999999999999999999999999999999988765
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhh
Q 002221 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVH 840 (951)
Q Consensus 764 ---~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y 840 (951)
-..++.|++..+++++++++.++|+.|++..+..|+.+..+...+ .........++++.|
T Consensus 454 G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~-----------------~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 454 GIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRF-----------------FSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCH-----------------HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccc-----------------cccccccccccccch
Confidence 336899999999999999999999999998866554432211000 000011222344456
Q ss_pred hhhhccc-cchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHHHH---HHHHhhcCCCCCEE
Q 002221 841 ATILSLW-GVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGYF---NNISEHLRIGPPLY 905 (951)
Q Consensus 841 a~~l~~~-~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~yf---~~~~~~l~~gpPvy 905 (951)
.+++.+. ..|+.++++++++++++++..++++.++=|. .-+|+++.+.+-- +.+++.+..-|.+-
T Consensus 517 ~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~ 594 (1021)
T PF00873_consen 517 RRLLRWALRHPKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVK 594 (1021)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEE
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhh
Confidence 6644321 1245567777888888999888888766553 5578888655443 45566665555543
No 30
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.54 E-value=1.4e-13 Score=151.60 Aligned_cols=165 Identities=11% Similarity=0.234 Sum_probs=143.5
Q ss_pred hhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhh
Q 002221 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (951)
Q Consensus 619 ~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (951)
+++.+|+.+. -+..+++++++|++|+.+.++ + ..+++.++.++.+++.++|+++++|+++|. .
T Consensus 119 ~~vg~~~~~~---~~~a~~~al~~i~i~l~~~F~-~------------~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~ 181 (289)
T PRK13022 119 PQVGKELAQK---GLLALLVALVGILIYIAFRFE-W------------RFALGAIIALLHDVIITLGIFSLFQIEFDL-T 181 (289)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4566666653 344567889999999887763 2 237888999999999999999999999997 5
Q ss_pred hhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 002221 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (951)
Q Consensus 699 ~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa 775 (951)
+.+...+++|+++||++++.++++++. ++.+.++++.+++.+...+++.|++|++++|+.+.+...+.++.|++...
T Consensus 182 siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~ 261 (289)
T PRK13022 182 VIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFGGGTLHDFALALL 261 (289)
T ss_pred HHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677777889999999999999999874 36899999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 776 LAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
+|++++++.++++.|+++.+..+|.
T Consensus 262 ~Gli~~~~~sl~i~p~l~~~~~~~~ 286 (289)
T PRK13022 262 IGIIVGTYSSIFVASPLLLWLGVRR 286 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999876554
No 31
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.54 E-value=1.2e-12 Score=168.33 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=173.0
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++....+.+ +.+++..+.-...++++.+++++.+++.|++++ .+++..+++.+|++.++.+|
T Consensus 321 P~g~~~~~~~d~s--~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r------------~~liv~~~iP~s~~~~~~~m 386 (1051)
T TIGR00914 321 PEGVEIVTTYDRS--QLVDAAIATVKKNLLEGALLVIVILFLFLGNIR------------AALIAATVIPLSLLITFIGM 386 (1051)
T ss_pred CCCcEEEEecCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5678876655543 223332222333455666666666677777653 26777788999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-c-----C-----CCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-----E-----LPLETRISNALVEVGPSITLASLSEVLAF 756 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~-----~-----~~~~e~i~~al~~~g~si~~tslT~~~~F 756 (951)
.++|+++|.+ +.. .|++|+-|||++++++..++.. . + .++.+|+.++.++++.|++.|++|++++|
T Consensus 387 ~~~g~sln~~-sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pil~stlTti~~f 463 (1051)
T TIGR00914 387 VFQGISANLM-SLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPLIFGQLIITLVF 463 (1051)
T ss_pred HHhCCcHHHH-HHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999974 332 5667999999999998755431 1 3 56789999999999999999999999999
Q ss_pred HhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhH
Q 002221 757 AVGSFIPM---PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLA 833 (951)
Q Consensus 757 ~~~~~s~~---p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~ 833 (951)
+.+.+.+- ...+.|++..+++++++++.++|+.|+++.+..++... + .... +.
T Consensus 464 lPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~-~----------------------~~~~-~~ 519 (1051)
T TIGR00914 464 LPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVA-E----------------------KENR-LM 519 (1051)
T ss_pred HHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-c----------------------ccCh-HH
Confidence 98865432 57899999999999999999999999998865432110 0 0001 11
Q ss_pred HHHHHhhhhhh---ccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHH---HHHHHHhhc
Q 002221 834 RYMKEVHATIL---SLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHL 898 (951)
Q Consensus 834 ~~~~~~ya~~l---~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~---yf~~~~~~l 898 (951)
+.+++.|.+++ +++ |+.+++++++++++++++..+++.++-|. ...|+++.+.+ ..+.+++.+
T Consensus 520 ~~~~~~Y~~~l~~~l~~--~~~~i~~~~~ll~~~~~~~~~l~~~f~P~~d~~~~~v~~~~~~Gts~e~t~~~~~~vE~~l 597 (1051)
T TIGR00914 520 RVLKRRYEPLLERVLAW--PAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLI 597 (1051)
T ss_pred HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 22333444443 343 45677777888888888888877776543 23466765444 334556655
Q ss_pred CCCCC
Q 002221 899 RIGPP 903 (951)
Q Consensus 899 ~~gpP 903 (951)
..-|.
T Consensus 598 ~~~~~ 602 (1051)
T TIGR00914 598 KSFPE 602 (1051)
T ss_pred hcCCC
Confidence 43333
No 32
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.54 E-value=2.3e-13 Score=167.25 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhccc
Q 002221 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (951)
Q Consensus 633 ~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD 712 (951)
+..++++++++++|+.+.+|. .+++.++.+.++++.++|++.++|.++|+ ...+...+++|++||
T Consensus 269 ~~a~~ial~lV~i~l~~~fr~--------------~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd 333 (755)
T PRK13024 269 IIAGIIGFALIFLFMLVYYGL--------------PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVD 333 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHh
Confidence 334678888888888877653 36888889999999999999999999998 567777888999999
Q ss_pred ceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (951)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~pa 791 (951)
|.++++++++++ +++.+..+++.++.++.+.+++.|++|++++|+.+.+...+++|.|++..++|++++++.++++.|+
T Consensus 334 ~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~ 413 (755)
T PRK13024 334 ANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRL 413 (755)
T ss_pred CcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 4678999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHhhhhccc
Q 002221 792 LIVFDFLRA 800 (951)
Q Consensus 792 lL~l~~rr~ 800 (951)
++.+..++.
T Consensus 414 l~~~~~~~~ 422 (755)
T PRK13024 414 LLELLVKRG 422 (755)
T ss_pred HHHHhhccC
Confidence 998776554
No 33
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.52 E-value=9e-13 Score=165.66 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=184.2
Q ss_pred CCCeEEE--EccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLA--FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (951)
Q Consensus 608 ~~~l~v~--f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (951)
++|+++. |.....++..+++ -+.+++.+.++.++.++++|++++. ++++.+.+.+|++.+|+
T Consensus 309 P~gv~~~~~~D~t~~V~~si~~----v~~tL~~a~~lVv~Vi~lFL~~~ra------------tlI~~iaiPlsLlgtf~ 372 (1009)
T COG0841 309 PQGVDIAIPYDTTEFIKASIEE----VIKTLFEAIVLVVLVMYLFLGNLRA------------TLIPALAVPVSLLGTFA 372 (1009)
T ss_pred CCCcEEEEecCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcce------------eEEeeeechHHHHHHHH
Confidence 5566554 4444445544444 3445777777777777778888652 46777889999999999
Q ss_pred HHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc-Cc
Q 002221 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-PM 764 (951)
Q Consensus 686 l~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s-~~ 764 (951)
+|.++|+++|. ++...-.|.+|+-|||++++++..+|...|+++.+|..+++++++.+++.+++|.++.|+..++. .+
T Consensus 373 ~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~~G~ 451 (1009)
T COG0841 373 VMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFMGGS 451 (1009)
T ss_pred HHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999998 56666667777779999999988776433999999999999999999999999999999976654 33
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhh
Q 002221 765 P--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT 842 (951)
Q Consensus 765 p--~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~ 842 (951)
. -.|.|++..+++++++++.++|+.|++-+..-|+.+... ...-+ ..+..+.+.++..+. -.
T Consensus 452 ~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~-~~~~~--------------~~~~~~~~~~~Y~~~-l~ 515 (1009)
T COG0841 452 TGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPK-GFFGW--------------FNRFFDRLEDRYQRG-LR 515 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-chhhh--------------hhhhhhHHHHHHHHH-HH
Confidence 3 579999999999999999999999999886655432211 00000 000111222222222 23
Q ss_pred hhccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCc---hHHHHHHHHhhc
Q 002221 843 ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSY---LQGYFNNISEHL 898 (951)
Q Consensus 843 ~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSy---l~~yf~~~~~~l 898 (951)
+++++ |+.++++++++++.++++...+..++=|. ..+|+++. ..+..+.+++++
T Consensus 516 ~~L~~--~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~~ 581 (1009)
T COG0841 516 WVLRR--RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDWL 581 (1009)
T ss_pred HHHhh--HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34454 67788888999999999999999988664 56888864 444455666653
No 34
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.52 E-value=1.4e-13 Score=142.82 Aligned_cols=137 Identities=13% Similarity=0.179 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccce
Q 002221 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (951)
Q Consensus 635 ~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~ 714 (951)
.+.++++++++++.+.+| ++ .++..++++..++++++|+|+++|+++|. .+.+.+.+++|++|||+
T Consensus 52 ~l~~a~~lv~l~l~~~~r-~~------------~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~a 117 (192)
T TIGR00916 52 ALLIGLVLVLLYMLLRYE-WR------------GAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDT 117 (192)
T ss_pred HHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCe
Confidence 456788888888877765 21 25666778888899999999999999998 67888889999999999
Q ss_pred ehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Q 002221 715 CILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 785 (951)
Q Consensus 715 ~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~ 785 (951)
+|++++|+++. ++.+.++++.++.++.+++++.|++|++++|+.+.+.+.+.++.|++...++++++++.+
T Consensus 118 Ivv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 118 VVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred EEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999998863 578999999999999999999999999999999999999999999999999999998764
No 35
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.49 E-value=6.4e-13 Score=161.14 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=140.9
Q ss_pred EccchhHHHHHhhhhchh-hHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcc
Q 002221 615 FSSESSIEEELKRESTAD-AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVK 693 (951)
Q Consensus 615 f~~e~sl~~el~~~s~~d-~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~ 693 (951)
+..++.+.-++.+..... +...+++++++++|+.+.+|. .|+..++.+++.++.++|+++++|.+
T Consensus 262 ~~~~~~VgptLG~~~~~~~~~A~ii~~~lV~lfm~~~Y~~--------------~glia~iaL~~~v~~tl~~l~l~g~~ 327 (758)
T PRK13023 262 VLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGI--------------LGVIALVALVVNIIILTAVLSLIGAS 327 (758)
T ss_pred eeeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 333444444444433322 333557778888888776543 36788889999999999999999999
Q ss_pred cchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHH
Q 002221 694 STLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSM 772 (951)
Q Consensus 694 ~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl 772 (951)
+|+ ....--.+.+|++||+.+++.++++++ +.+.+..+++.++.++++.+++.+++|++++|+.+.+...++++.|++
T Consensus 328 Lnl-~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g~ik~FAi 406 (758)
T PRK13023 328 ISL-ASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFAL 406 (758)
T ss_pred ccH-HHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 997 566666788999999999999999987 467899999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 773 FAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 773 ~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
...+|++++++.++++.|+++.+..++
T Consensus 407 tliiGi~~S~~~al~vt~~l~~~~~~~ 433 (758)
T PRK13023 407 TVAIGIGTTLFTTLTFTRLLIAQWVRT 433 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876654
No 36
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.46 E-value=1.8e-12 Score=159.12 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccce
Q 002221 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (951)
Q Consensus 635 ~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~ 714 (951)
.++++++++++|+.+.+|. .|+...+.+.+.++.++|++.++|.++|+ +...--.+.+|++||+.
T Consensus 377 aliig~ilV~l~m~lfyr~--------------~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~ 441 (855)
T PRK14726 377 AGLIAAILVAALMIGFYGF--------------LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSN 441 (855)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCce
Confidence 3556777777776666542 37788889999999999999999999998 45555567789999999
Q ss_pred ehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 715 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793 (951)
Q Consensus 715 ~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL 793 (951)
+++.++.+|+ +.+.+..+++..+.++++.+++.+++|++++|+.+.+.+..++|.|++..++|++++++.++++.|+++
T Consensus 442 IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~ 521 (855)
T PRK14726 442 VLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521 (855)
T ss_pred EEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 467899999999999999999999999999999998888888999999999999999999999999999
Q ss_pred hhhhcc
Q 002221 794 VFDFLR 799 (951)
Q Consensus 794 ~l~~rr 799 (951)
.+..++
T Consensus 522 ~~~l~~ 527 (855)
T PRK14726 522 AVWLRR 527 (855)
T ss_pred HHHhcc
Confidence 865443
No 37
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.45 E-value=3.6e-11 Score=154.55 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHhhC-CCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcc
Q 002221 633 AITIVISYLVMFAYISLTLG-DTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGV 711 (951)
Q Consensus 633 ~~~l~is~llmflyv~~~l~-~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGv 711 (951)
+..+++++++|++..++.+| +. ..+++.++++.++++..+|+|.+.|+++|. ++.+.-.+.+|++|
T Consensus 1051 ~~~l~~a~~~v~~V~~l~l~l~~------------~~aliv~l~I~~i~~~~~g~M~~~gisLN~-vSlv~Li~avGisV 1117 (1204)
T TIGR00917 1051 LINLGISLGAIFIVTLVLLGLNA------------LSAVNVVISVGMIVVNLVGIMHLWNISLNA-VSVVNLVMAKGISI 1117 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------------hhHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHhhhHH
Confidence 33566777888777777653 32 125777788899999999999999999998 57777778889999
Q ss_pred cceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHH-HHHHHHHHHhhcccCchHHHHHHHHHHHH-HHHHHHHHHHHH
Q 002221 712 DNMCILVHAVKRQQLELPLETRISNALVEVGPSITLA-SLSEVLAFAVGSFIPMPACRVFSMFAALA-VLLDFLLQITAF 789 (951)
Q Consensus 712 D~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~t-slT~~~~F~~~~~s~~p~vr~Fgl~aa~a-v~~~~l~~lt~~ 789 (951)
|.+-|+.++|.+.. ..++.+|+.+|++++|.|++.+ ++|+++||+.+++++...++.|-..+-++ |++.++=.+.++
T Consensus 1118 ~f~~hI~~~f~~~~-~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfL 1196 (1204)
T TIGR00917 1118 EFCSHINAQFSTSK-HFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFL 1196 (1204)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987642 4578899999999999999998 68999999999999999999876555554 477888889999
Q ss_pred HHHHhhh
Q 002221 790 VALIVFD 796 (951)
Q Consensus 790 palL~l~ 796 (951)
|.+|++.
T Consensus 1197 PVlLS~~ 1203 (1204)
T TIGR00917 1197 PVLLSYI 1203 (1204)
T ss_pred HHHHHhc
Confidence 9999874
No 38
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.41 E-value=4.9e-12 Score=148.06 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhccc
Q 002221 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (951)
Q Consensus 633 ~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD 712 (951)
+..++++++++++|+++.+|+ .|++.++.++++++.++|+|.++|+++|+ ...+.-.+++|++||
T Consensus 336 ~~A~lig~ilV~i~m~~~yr~--------------~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD 400 (498)
T PRK05812 336 LIAGLIGLALVLLFMILYYRL--------------FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVD 400 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEe
Confidence 344678888888898887763 27888899999999999999999999998 566666788999999
Q ss_pred ceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (951)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~pa 791 (951)
+.+++.++++++ +.+.+..+++.++.+++..+++.+++|++++|+.+.+.....++.|++...+|++++++.++++.|+
T Consensus 401 ~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~ 480 (498)
T PRK05812 401 ANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRA 480 (498)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 4678999999999999999999999999999999887666789999999999999999999999999
Q ss_pred HHhhhhc
Q 002221 792 LIVFDFL 798 (951)
Q Consensus 792 lL~l~~r 798 (951)
++.+..+
T Consensus 481 l~~~~~~ 487 (498)
T PRK05812 481 LVNLLYG 487 (498)
T ss_pred HHHHHHh
Confidence 9985443
No 39
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.36 E-value=1.2e-11 Score=141.69 Aligned_cols=146 Identities=14% Similarity=0.217 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhccc
Q 002221 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (951)
Q Consensus 633 ~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD 712 (951)
+..++++++++++|+++.+|+ .|++.++.+.+.++.++|+|+++|+++|+ ...+--.+++|++||
T Consensus 251 ~~a~~ig~ilV~l~~~~~yr~--------------~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD 315 (397)
T TIGR01129 251 IKAGLIGLVLVLVFMILYYRL--------------FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVD 315 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeee
Confidence 345678889999998888763 26888889999999999999999999998 566666788999999
Q ss_pred ceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (951)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~pa 791 (951)
+.++++++++++ +.+.+..+++.+++++++.+++.+++|++++|+.+.+...+.++.|++...+|++++++.++++.+.
T Consensus 316 ~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~ 395 (397)
T TIGR01129 316 ANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRL 395 (397)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 4678899999999999999999999999999999888777789999999999999999999998876
Q ss_pred HH
Q 002221 792 LI 793 (951)
Q Consensus 792 lL 793 (951)
++
T Consensus 396 ~~ 397 (397)
T TIGR01129 396 LL 397 (397)
T ss_pred hC
Confidence 53
No 40
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.35 E-value=3.7e-11 Score=129.78 Aligned_cols=140 Identities=14% Similarity=0.257 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccc
Q 002221 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (951)
Q Consensus 634 ~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~ 713 (951)
..++++++++++|+.+.++ + ..+++.++.+.++++.++|++.++|+++|. .+.+...+++|+.+||
T Consensus 102 ~~~~la~i~i~l~l~~~f~-~------------r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd 167 (246)
T TIGR00966 102 LALLAALVLILIYITVRFE-W------------RFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSIND 167 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccC
Confidence 3456777777777776543 2 237888899999999999999999999997 5677778889999999
Q ss_pred eehhHHHHHHH-h--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Q 002221 714 MCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQIT 787 (951)
Q Consensus 714 ~~~l~~~~~~~-~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt 787 (951)
+++++++++|. + ++.+..+++.++.++...+++.|++|++++|+.+.+.+-+.+|.|++...+|++++.+.++.
T Consensus 168 ~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 168 TVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred eEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 2 37899999999999999999999999999999998888899999999999999999887765
No 41
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.35 E-value=2.1e-11 Score=150.46 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHH
Q 002221 669 GLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITL 747 (951)
Q Consensus 669 gl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~ 747 (951)
|+...+.+++.++.++|++.++|+++|+ ...+--.+++|++||+.+++.++.+++ +.+.+..+++..+..++..+++.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5677777888899999999999999998 556666788999999999999999987 46889999999999999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 748 tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
|++|++++++.+.+....+++.|++...+|++++++.++++.|+++.+..++
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999987777777999999999999999999999999999866544
No 42
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.32 E-value=2.2e-11 Score=156.62 Aligned_cols=179 Identities=13% Similarity=0.167 Sum_probs=144.3
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.|.|+. +++++....-...++++++++++.+++.|++++ .+++.++++.++++.++..+
T Consensus 859 P~g~~~~~~g~~---~~~~~~~~~l~~~~~~a~~li~lvL~~~f~s~~------------~~lii~~~iPl~~~g~~~~l 923 (1051)
T TIGR00914 859 PPGYWITWGGQF---EQLQSATKRLQIVVPVTLLLIFVLLYAAFGNVK------------DALLVFTGIPFALTGGVFAL 923 (1051)
T ss_pred CCceEEEecchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 578999998864 333333222233456778888887777777752 35677778888888888888
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC---
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP--- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~--- 763 (951)
.++|.+++. .+.+-..+++||.|||++++++++++. .++.+..+|+.++.++...||++|++|+++||+.+++..
T Consensus 924 ~~~g~~l~~-~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~ttltti~g~lPl~~~~g~~ 1002 (1051)
T TIGR00914 924 WLRGIPLSI-SAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTG 1002 (1051)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 899999997 566666777899999999999999876 468899999999999999999999999999999987753
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 002221 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAED 802 (951)
Q Consensus 764 ~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~ 802 (951)
.+..+.+++..+.|+++++++++++.|+++.+..++.+.
T Consensus 1003 ~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~~~~~~~~~ 1041 (1051)
T TIGR00914 1003 AEVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRRHK 1041 (1051)
T ss_pred hhhhcCceEEEEchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456788999999999999999999999999987766543
No 43
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.32 E-value=8.7e-11 Score=129.59 Aligned_cols=160 Identities=11% Similarity=0.183 Sum_probs=128.6
Q ss_pred hhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhh
Q 002221 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (951)
Q Consensus 619 ~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (951)
+++.+|..+. -...+++++++|++|+.+.++++ ..++..+++++..++.++|+++++|+++|..
T Consensus 126 p~~g~~~~~~---~~~al~~alilI~i~l~l~F~s~------------~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~- 189 (292)
T PRK08578 126 PTFGSQFQEQ---ALKAVGFAFIGMAVVVFLIFRTP------------VPSLAVILSAFSDIIIALALMNLFGIELSLA- 189 (292)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHCccccHH-
Confidence 4455555542 23346788899999988877642 3467888889999999999999999999984
Q ss_pred hhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc----CchHHHHHHHHH
Q 002221 699 MEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI----PMPACRVFSMFA 774 (951)
Q Consensus 699 ~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s----~~p~vr~Fgl~a 774 (951)
+.+.-.+++|+++||++++.+++++.. .+.++++.+++++. +.+++|++++|+.+.+. ..+.+|.|++..
T Consensus 190 ~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~----i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l 263 (292)
T PRK08578 190 TVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG----ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVL 263 (292)
T ss_pred HHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 444444779999999999999998653 57889999998543 35679999999987643 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 775 ALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 775 a~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
.+|++++++.++++.++++.+..+|+
T Consensus 264 ~~Gli~s~~~tl~~~~~~l~~~~~~~ 289 (292)
T PRK08578 264 IFGLLADLMNTWLLNAGILRWYKTEG 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999876654
No 44
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.29 E-value=6.7e-11 Score=139.21 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhc-CcccchhhhhHHHHHhhhhcccc
Q 002221 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDN 713 (951)
Q Consensus 635 ~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~-G~~~~~i~~~vipfLvLgIGvD~ 713 (951)
-++++++++++|+.+.+|++ |++..+.+.+.++.++|+|+++ |.++|+ +...--.+.+|+.||+
T Consensus 445 A~iig~vlV~lFm~~~Yr~~--------------glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVDa 509 (604)
T PRK12933 445 ALALGMGITLLFMALWYRRL--------------GWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVDT 509 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhccC
Confidence 45567777777776655542 6788889999999999999998 999998 4555556778999999
Q ss_pred eehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 714 MCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 792 (951)
Q Consensus 714 ~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~pal 792 (951)
.+++.++.+++ +.+.+..+++..+.+++..+++.+++|++++|+.+.+..-.++|.|++...+|++.+++.++++.|++
T Consensus 510 nIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l 589 (604)
T PRK12933 510 NVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRAL 589 (604)
T ss_pred cEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 46788999999999999999999999999999988777667899999999999999999999999999
Q ss_pred Hhhhhcc
Q 002221 793 IVFDFLR 799 (951)
Q Consensus 793 L~l~~rr 799 (951)
+.+..++
T Consensus 590 ~~~~~~~ 596 (604)
T PRK12933 590 INLVYGR 596 (604)
T ss_pred HHHHhcc
Confidence 8865544
No 45
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.26 E-value=1.7e-10 Score=148.02 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=146.3
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.+.|+.. |..+....-...++++++++++.+.+.|++++ .+++.++++.+|++.++..+
T Consensus 851 P~g~~~~~~G~~~---~~~~~~~~~~~~~~~al~li~lvl~~~F~S~~------------~pliI~~~iPlsl~G~~~~l 915 (1044)
T TIGR00915 851 PPGFGFSWTGMSY---EERLSGSQAPALYALSLLVVFLCLAALYESWS------------IPVSVMLVVPLGIIGALLAT 915 (1044)
T ss_pred CCCceEeeccHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5789999988632 22222222233466788888888888777753 25677788889999999888
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC---
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP--- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~--- 763 (951)
.++|.+++. ++.+--.+++||-|||++++++.+++.+ ++.+..+|+.+|.++-..||++|++|+++||+.+++..
T Consensus 916 ~~~g~~l~~-~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmTtltti~gllPla~~~g~g 994 (1044)
T TIGR00915 916 SLRGLSNDV-YFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMTSLAFILGVVPLAISTGAG 994 (1044)
T ss_pred HHHCCCccH-HHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999997 5566667889999999999999998764 68899999999999999999999999999999988753
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 002221 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR 804 (951)
Q Consensus 764 ~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r 804 (951)
-+..+.+|+....|++++.++++++.|+++.+..|+.+..+
T Consensus 995 ~~~~~plai~vigGL~~st~ltL~vvP~ly~~~~~~~~~~~ 1035 (1044)
T TIGR00915 995 SGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVRRLFKRKS 1035 (1044)
T ss_pred hHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 35688999999999999999999999999998777755433
No 46
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.21 E-value=6.7e-10 Score=142.63 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=141.5
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++++++.+.|+. .+...........+.++++++++.+.+.|++++. .++.++++.+|++.++..+
T Consensus 852 P~g~~~~~~G~~---~~~~~~~~~~~~~~~~ai~lv~lvL~~~f~s~~~------------pliI~~~IPls~~Ga~~~l 916 (1049)
T PRK15127 852 PTGVGYDWTGMS---YQERLSGNQAPALYAISLIVVFLCLAALYESWSI------------PFSVMLVVPLGVIGALLAA 916 (1049)
T ss_pred CCCcEEEeccHH---HHHHhccccHHHHHHHHHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHHHH
Confidence 578999998752 1222211222334556667777777777777532 5777788899999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH--hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC--
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~--~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~-- 763 (951)
.++|.+++. ++.+--.+++||-|||++++++.+++. ..+.+..+|+.+|.++-..||++|++|+++||+.+++..
T Consensus 917 ~~~g~~l~~-~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIlmTtlTti~gllPl~l~~G~ 995 (1049)
T PRK15127 917 TFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGA 995 (1049)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 999999997 455666677899999999999999864 358899999999999999999999999999999988763
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 764 -~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
-+..+-+|+....|++++.++++++.|+++.+..||.
T Consensus 996 g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~~~~~~ 1033 (1049)
T PRK15127 996 GSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1049)
T ss_pred CHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999999999876654
No 47
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.21 E-value=6.7e-10 Score=137.04 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=143.4
Q ss_pred eEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 002221 611 LTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (951)
Q Consensus 611 l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~ 690 (951)
.+....| +++.+|+.+. -+..+++++++|++|+++-+ + +..++.+++..+.-++.++|+++++
T Consensus 562 ~~~~~Vg-p~~g~~~~~~---~~~a~~~a~~~i~iyi~~rF-~------------~~~~~~aiial~~dvii~~g~~~l~ 624 (755)
T PRK13024 562 PSSETVG-PTVGKELARN---AIIAVLIALIGILLYILIRF-E------------WTFSLGAILALLHDVLIVIGFFSLF 624 (755)
T ss_pred eEEEEEC-HhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443 5677777664 34457788999999988765 2 3347889999999999999999999
Q ss_pred CcccchhhhhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHH
Q 002221 691 GVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (951)
Q Consensus 691 G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~v 767 (951)
|+++++ .....-..++|.++||.+++.+|++|+. ++.+.++.+..++.+++...+.|++|++++++++.+...+.+
T Consensus 625 ~~~~~~-~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts~tt~~~~~~L~~~g~~~i 703 (755)
T PRK13024 625 RLEVDL-TFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSL 703 (755)
T ss_pred cceEcH-HHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 999998 4555556789999999999999999973 568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 768 r~Fgl~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
+.|++...+|++++..-++.+-++++.+..+|
T Consensus 704 ~~fa~~l~iGii~g~~ssifia~~l~~~~~~~ 735 (755)
T PRK13024 704 RNFSLALLVGLIVGTYSSIFIAAPLWLDLEKR 735 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988887777655444
No 48
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.20 E-value=9.4e-10 Score=113.80 Aligned_cols=163 Identities=17% Similarity=0.262 Sum_probs=132.9
Q ss_pred hhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhh
Q 002221 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (951)
Q Consensus 619 ~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (951)
+++.+|..+. -+..++++++++++|+.+.+|. ..++..++..+..++.++|+++++|+++|+ .
T Consensus 23 p~~g~~~~~~---~~~a~~~al~~i~iyi~~rf~~-------------~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~ 85 (189)
T PF02355_consen 23 PTLGSDLLKS---ALIALIIALIAILIYIFLRFRW-------------RFALAAIIALIHDVLITLGIFSLFGIELTL-P 85 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCTH-------------HHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-H
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc-------------chHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4565555543 3345678888888888876542 236788888888899999999999999998 5
Q ss_pred hhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 002221 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (951)
Q Consensus 699 ~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa 775 (951)
....-.+++|.+||+.+++.+|.+|+. ++.+.++++.++++++....+.|++|+.++.+.+.+..-..++.|++...
T Consensus 86 ~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~ 165 (189)
T PF02355_consen 86 SIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLI 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 566667889999999999999999983 47899999999999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 002221 776 LAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~r 798 (951)
+|++++.+.++.+-++++.+..+
T Consensus 166 iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 166 IGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998876554
No 49
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.16 E-value=7.6e-10 Score=121.71 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=138.6
Q ss_pred chhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchh
Q 002221 618 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697 (951)
Q Consensus 618 e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i 697 (951)
++++.+|+.+. -...+.+++++|++|+.+-++ + ..++..++.+...++.++|++.++|.+++.
T Consensus 117 gp~~g~~~~~~---~~~a~~~ali~I~lyl~~rF~-~------------~~~l~al~al~~dv~~~l~~l~l~g~~l~~- 179 (297)
T PRK13021 117 GPQVGQELAEQ---GGLALLVAMLCILGYLSYRFE-W------------RLASGALFALVHDVIFVLAFFALTQMEFNL- 179 (297)
T ss_pred CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCCccH-
Confidence 35677777764 344567888899999887654 3 246778889999999999999999999997
Q ss_pred hhhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 002221 698 IMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (951)
Q Consensus 698 ~~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~a 774 (951)
...+--..++|+.++|.++++++++|.. ++.+.+|++.+++.+.-.++++|++|++++.+.+.+..-+.+|.|++..
T Consensus 180 ~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G~~~~~~fA~~l 259 (297)
T PRK13021 180 TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAM 259 (297)
T ss_pred HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5566667889999999999999999764 4678999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002221 775 ALAVLLDFLLQITAFVALIVFDF 797 (951)
Q Consensus 775 a~av~~~~l~~lt~~palL~l~~ 797 (951)
.+|+++..+.++.+-.+++.+..
T Consensus 260 i~Gli~gt~sslfva~pl~~~~~ 282 (297)
T PRK13021 260 FIGILTGTFSSISVGTSLPELLG 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998888776554
No 50
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.16 E-value=1.5e-09 Score=139.19 Aligned_cols=175 Identities=10% Similarity=0.094 Sum_probs=140.2
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.|.|+. +++++....-...++++++++++++.+.+.++ ...++-++++.++++.++..+
T Consensus 845 P~g~~~~~~g~~---~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~------------~~pliI~~tIPls~~G~~~~l 909 (1040)
T PRK10503 845 PADITTQFQGST---LAFQSALGSTVWLIVAAVVAMYIVLGVLYESF------------IHPITILSTLPTAGVGALLAL 909 (1040)
T ss_pred CCCeEEEeccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch------------hhHHHHHHHHHHHHHHHHHHH
Confidence 678999988764 23343333334446677777777777666654 234666778888888888888
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHH--HhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC--
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~--~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~-- 763 (951)
.++|.+++. ++.+--.+++||-|||++++++...+ ..+|.++.+|+.+|.++-..||++|++|+++||+.+++..
T Consensus 910 ~l~g~~l~~-~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTtltti~gllPlal~~G~ 988 (1040)
T PRK10503 910 MIAGSELDV-IAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGV 988 (1040)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 899999997 56666677889999999999998764 3478999999999999999999999999999999987753
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002221 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 764 -~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~r 798 (951)
-...+-+++....|++++.++++++.|+++.+..+
T Consensus 989 g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~~ 1024 (1040)
T PRK10503 989 GAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFDR 1024 (1040)
T ss_pred ChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999987643
No 51
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.15 E-value=1.4e-09 Score=139.78 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=142.8
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.+.|+. .|.+.........+.++++++++.+++.|++++ ..++.++++.++++.++..+
T Consensus 850 P~g~~~~~~G~~---~~~~~~~~~~~~~~~~al~lv~~il~~~f~s~~------------~pliI~~~IPlal~G~l~~L 914 (1037)
T PRK10555 850 PNGFGLEWTAMS---YQERLSGAQAPALYAISLLVVFLCLAALYESWS------------VPFSVMLVVPLGVIGALLAT 914 (1037)
T ss_pred CCCcEEEecChH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhH------------hHHHHHHHHHHHHHHHHHHH
Confidence 678999999863 122222122233455677777777777777753 25777788899999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc---C
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI---P 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s---~ 763 (951)
.++|.+++. .+.+--.+++||-|||++++++..++. .++.+..+|+.+|-++-..||++|++|+++||+.+++. .
T Consensus 915 ~i~g~~l~~-~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmTtltti~gllPlal~~g~g 993 (1037)
T PRK10555 915 WMRGLENDV-YFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAG 993 (1037)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999997 556666778899999999999998865 46889999999999999999999999999999988775 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 764 ~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
-+..+-+++....|++++.++++++.|+++.+..+|.
T Consensus 994 ~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~~~~ 1030 (1037)
T PRK10555 994 SGSQHAVGTGVMGGMISATILAIFFVPLFFVLVRRRF 1030 (1037)
T ss_pred hHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3678899999999999999999999999999876654
No 52
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.12 E-value=7.8e-10 Score=141.60 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=142.8
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.+.|+. +|..+..+.-...++++++++++.+.+.+++++ ..++.++++.++++.++..+
T Consensus 825 P~g~~~~~~G~~---~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~------------~pliI~~~iPla~~G~~~~L 889 (1017)
T PRK09579 825 PEGFAFDYAGAS---RQYVQEGSALWVTFGLALAIIFLVLAAQFESFR------------DPLVILVTVPLSICGALIPL 889 (1017)
T ss_pred CCCcEEEeechH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 678999999974 232333333344567888888888888887753 24667778888888888777
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC--
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~-- 763 (951)
.++|.+++. ++.+--.+++||.|+|++++++.+++.+ +|.+.++|+.+|.++-..||++|++|+++||+.+++..
T Consensus 890 ~i~~~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTtlTti~gllPla~~~g~ 968 (1017)
T PRK09579 890 FLGVSSMNI-YTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968 (1017)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 888999997 5566667788999999999999988643 58999999999999999999999999999999887652
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 002221 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (951)
Q Consensus 764 -~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~ 801 (951)
....+.+|+....|++++.+++++++|+++.+..++.+
T Consensus 969 g~~~~~plA~~iigGL~~st~ltL~~iP~ly~l~~~~~~ 1007 (1017)
T PRK09579 969 GAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDA 1007 (1017)
T ss_pred ChHHhCCceeeeehHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34566789999999999999999999999998776543
No 53
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.09 E-value=9.1e-09 Score=123.23 Aligned_cols=247 Identities=18% Similarity=0.205 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCeEEEEccchh--HHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCccccc
Q 002221 585 KKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYI 662 (951)
Q Consensus 585 ~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~e~s--l~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v 662 (951)
+.+.+-++++ +.+++. -++|+++.-.=+|| ++..+...+ ..++=+.+++.+.+.++|+++|
T Consensus 297 ~V~~aV~~kl-~elk~~-----LP~gVki~~~ydRs~lid~AI~tv~----k~LiEg~vlV~iVl~lFLgn~R------- 359 (1027)
T COG3696 297 EVIAAVKEKL-EELKKS-----LPEGVKIVTTYDRSELIDKAIDTVS----KTLIEGSVLVIIVLALFLGNFR------- 359 (1027)
T ss_pred HHHHHHHHHH-HHHHhh-----CCCCcEEEEEeeHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHhccHH-------
Confidence 4444555554 233433 25677764332333 344444332 2344444555555555677754
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-h----cCCCHHHHHHHH
Q 002221 663 SSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-Q----LELPLETRISNA 737 (951)
Q Consensus 663 ~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~----~~~~~~e~i~~a 737 (951)
| +++-++++.+|++.+|-+|.++|++.|++ +.---.+-+|+-||.++++++.-+|. . .+..+-+.+.++
T Consensus 360 -s----Ali~~~~lPLS~li~f~~M~~~gi~~NlM-SLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a 433 (1027)
T COG3696 360 -S----ALIVIISLPLSLLIAFIVMNFFGISANLM-SLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDA 433 (1027)
T ss_pred -H----HHHHHHHHHHHHHHHHHHHHHcCCcchhh-cccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHH
Confidence 2 67778889999999999999999999973 33322444555589999888654443 2 255667789999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhh-cccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCC
Q 002221 738 LVEVGPSITLASLSEVLAFAVG-SFIPMP--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS 814 (951)
Q Consensus 738 l~~~g~si~~tslT~~~~F~~~-~~s~~p--~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~ 814 (951)
.++++.|++++.+.-++.|+.. +++.+. ..+-+++.-.++++.++++++|+.|++.++.-|. +.
T Consensus 434 ~~EV~~~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~----~~--------- 500 (1027)
T COG3696 434 SKEVGRPVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRG----IL--------- 500 (1027)
T ss_pred HHHhhhhHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC---------
Confidence 9999999999999988999864 344333 3455667778888999999999999999987653 11
Q ss_pred CCccCCcCCCCCCCcchhHHHHHHhhhhhhcc-ccchhhhHHHHHHHHHHHHHhhcccCCCcccc
Q 002221 815 SSYADSDKGIGQRKPGLLARYMKEVHATILSL-WGVKIAVISLFVAFTLASIALCTRIEPGLEQK 878 (951)
Q Consensus 815 ~~~~~~~~~~~~~~~~~l~~~~~~~ya~~l~~-~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~ 878 (951)
++++.++.||+++.|.|.+-. -..+..++++.++.++++++..+++--.|-|+
T Consensus 501 -----------~e~en~l~r~~~r~Y~plL~~~l~~p~~vl~~A~~~~~~s~~l~~~lG~eF~P~ 554 (1027)
T COG3696 501 -----------PESENPLMRFLIRVYAPLLEFVLKLPKLVLLGAVLSLVASLVLLPKLGREFLPE 554 (1027)
T ss_pred -----------cccccHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcchhcCCC
Confidence 234578999999999997743 11244566777788888888887776665543
No 54
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.08 E-value=5.8e-09 Score=134.03 Aligned_cols=175 Identities=10% Similarity=0.085 Sum_probs=142.2
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.|.|+. ++.++....-...++++++++++.+.+.++++. ..++-++++.++++.++..+
T Consensus 831 P~g~~~~~~G~~---~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~------------~pliI~~tIPlal~G~~~~L 895 (1025)
T PRK10614 831 PSTVRGSFAGTA---QVFQETMNSQLILILAAIATVYIVLGILYESYV------------HPLTILSTLPSAGVGALLAL 895 (1025)
T ss_pred CCCeEEEeccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 678999999863 233443333444567888888888888777752 24666788889999998888
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hc-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC--
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~-~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~-- 763 (951)
.++|.+++. .+.+--.+++||-|+|++++++.+.+. .+ +.+..+|+.+|-++-..||++|++|+++|++.+++..
T Consensus 896 ~l~g~~l~~-~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTtlTti~GllPlal~~g~ 974 (1025)
T PRK10614 896 ELFNAPFSL-IALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGD 974 (1025)
T ss_pred HHHCCCccH-HHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999996 556666678899999999999988864 34 7899999999999999999999999999999887752
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002221 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 764 -~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~r 798 (951)
-+..+-+|+....|++++.+++++++|+++.+..+
T Consensus 975 g~~~~~pmAi~iigGL~~sT~ltL~vvP~lY~~~~~ 1010 (1025)
T PRK10614 975 GAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDR 1010 (1025)
T ss_pred CHHHhCCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24688899999999999999999999999997644
No 55
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.07 E-value=5.5e-09 Score=134.22 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=140.4
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.+.|+. ++.++....-...+.++++++++.+.+.|++++ ..++.++++.++++.++..+
T Consensus 846 P~g~~~~~~G~~---~~~~~~~~~l~~~~~~ai~li~lvl~~~F~S~~------------~plii~~~iPl~l~G~~~~l 910 (1032)
T PRK09577 846 PAGIGYAWSGQS---FEERLSGAQAPMLFALSVLVVFLALAALYESWS------------IPFAVMLVVPLGVIGAVLGV 910 (1032)
T ss_pred CCCcEEEeccHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhhHHHHHHHHHH
Confidence 678999999863 233332222233466788888888888887753 25677778888888888888
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC---
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP--- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~--- 763 (951)
.++|.+++. .+.+--.+++||-|+|++++++..++. .++.+..+|+.+|.++-..||++|++|+++||+.+++..
T Consensus 911 ~l~g~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlmTtltti~gllPla~~~g~g 989 (1032)
T PRK09577 911 TLRGMPNDI-YFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAA 989 (1032)
T ss_pred HHhCCCccH-HHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHccCCC
Confidence 889999997 455556688899999999999999865 478899999999999999999999999999999988753
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002221 764 MPACRVFSMFAALAVLLDFLLQITAFVALIVFDF 797 (951)
Q Consensus 764 ~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~ 797 (951)
.+..+-+|+....|++++.+++++++|+++.+..
T Consensus 990 ~~~~~pla~~iigGL~~sT~lTL~vvP~ly~l~~ 1023 (1032)
T PRK09577 990 SGAQIAIGTGVLGGVITATVLAVFLVPLFFVVVG 1023 (1032)
T ss_pred hHHhcCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999999998753
No 56
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.07 E-value=8.2e-09 Score=133.22 Aligned_cols=174 Identities=15% Similarity=0.212 Sum_probs=144.8
Q ss_pred CCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 607 ~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
-++|+++.|.|+. ++.++....-...+++++++|++.+.+.|++++. .++-++++.++++.++-.
T Consensus 842 lp~g~~~~~~G~~---~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~~------------PliIm~~IPla~~G~~~~ 906 (1021)
T PF00873_consen 842 LPPGYTIEFGGEA---EEMQESFSSLGFALILALLLIYLILAAQFESFRQ------------PLIIMLTIPLALIGVLLG 906 (1021)
T ss_dssp SSTTEEEEEECHH---HHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSST------------HHHHHTTHHHHHHHHHHH
T ss_pred CCCCCcccCCchH---HHHHhhhcchhhhHHHHHHHHHHHHHHHhcceee------------eEEEEeccchhhHHHHHH
Confidence 3689999999974 3444444444556778999999999998888642 466677778888888888
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC-
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP- 763 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~- 763 (951)
+.++|.+++. .+.+--.+++||-|.|++++++.+++.+ ++.+..||+.+|-++=..||++|++||++|++.+++..
T Consensus 907 l~i~g~~l~~-~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTtlTti~G~lPla~~~g 985 (1021)
T PF00873_consen 907 LFITGQPLSF-MSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILMTTLTTILGMLPLALGIG 985 (1021)
T ss_dssp HHHTTBEBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhccccccc-cceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccccccC
Confidence 8899999997 5666667788999999999999999874 58899999999999999999999999999999988764
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002221 764 --MPACRVFSMFAALAVLLDFLLQITAFVALIVFD 796 (951)
Q Consensus 764 --~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~ 796 (951)
-+..+-+|+....|++++.+++++++|+++.+.
T Consensus 986 ~g~~~~~pla~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 986 EGAEFWQPLAIVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999998764
No 57
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.06 E-value=4.2e-09 Score=129.79 Aligned_cols=164 Identities=14% Similarity=0.253 Sum_probs=136.9
Q ss_pred hhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhh
Q 002221 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (951)
Q Consensus 619 ~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (951)
+++.+|+.+. -+.-+++++++|++|+++-+. +..|+.+++..+.-+++++|+++++|+++++ .
T Consensus 664 p~vG~el~~~---ai~Al~iAli~IliYI~~RF~-------------~~fa~~avial~hDv~i~~g~~~l~g~~ls~-~ 726 (855)
T PRK14726 664 PAVSGELTMA---ATLGVLAALAAILIYIWIRFE-------------WQFAVGAIIATLHDVILTLGLFVLTGIEFNL-T 726 (855)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHHHCCCccH-H
Confidence 5677777653 445577889999999887542 2237888999999999999999999999997 5
Q ss_pred hhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 002221 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (951)
Q Consensus 699 ~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa 775 (951)
..+.-..++|++++|+++++++++|+. ++.+..+.+..++.++..-+++|++|++++++.+++...+.++.|++...
T Consensus 727 ~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~TslTTll~llpL~l~G~~~i~~fai~li 806 (855)
T PRK14726 727 SIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAML 806 (855)
T ss_pred HHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566667789999999999999999764 45676777777777777779999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 776 LAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~rr 799 (951)
+|++++.+.++++-++++.+..+|
T Consensus 807 ~Gli~gt~sSifvAspll~~~~~~ 830 (855)
T PRK14726 807 FGVAVGTFSSIYIAAPVLIVFKLR 830 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988866544
No 58
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.95 E-value=5.9e-08 Score=106.74 Aligned_cols=173 Identities=13% Similarity=0.259 Sum_probs=142.7
Q ss_pred EEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 002221 612 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (951)
Q Consensus 612 ~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G 691 (951)
++.+-| +.+.+|+.+. -+.-++++++.|++|+++-++ +..++.+++..+-=++.++|+|+++|
T Consensus 120 ~~~~Vg-p~vg~eL~~~---~~~Al~~alv~I~iYV~~RFe-------------~~~a~aaI~al~hDvii~~g~~slfg 182 (305)
T COG0341 120 SVEFVG-PTVGKELARQ---GLLALLLALVGILIYVFFRFE-------------WRFALAAILALLHDVIITLGFFSLFG 182 (305)
T ss_pred eeeEEC-cchHHHHHHH---HHHHHHHHHHHHHHhhheeee-------------hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444554 4678888875 445567888889899876432 22388999999999999999999999
Q ss_pred cccchhhhhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHH
Q 002221 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768 (951)
Q Consensus 692 ~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr 768 (951)
+++|+ .+...-..++|-.++|.+++..|.+|.. +..+..|.+..++.++-.-...|++|+.++.+.+.+..-+.++
T Consensus 183 iE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fgg~~l~ 261 (305)
T COG0341 183 IEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSLK 261 (305)
T ss_pred eeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 99998 4555556778999999999999999864 4677779999999999999999999999987777766669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 002221 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAED 802 (951)
Q Consensus 769 ~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~ 802 (951)
+|++..-+|++.+..-++.+-+++|.+..+|++.
T Consensus 262 ~fa~~llvGii~gtySSifiA~pll~~~~~~~~~ 295 (305)
T COG0341 262 DFALALLVGIIAGTYSSIFIAAPLLLLLGKRREK 295 (305)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhh
Confidence 9999999999999999999999999887766554
No 59
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.85 E-value=8.6e-08 Score=110.48 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=120.0
Q ss_pred CCCeEEEEccchhHHHHHhhhhch-hhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTA-DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~-d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
+.++++...+. +...+.+.... -+...+++++++++|+.+.+|.+ .+.+...++.++.++..+|+
T Consensus 240 P~~~~i~~~~~--v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~------------~~i~~iaL~~~~~v~~~lg~ 305 (417)
T PRK08343 240 PVKLDIEGSGS--VSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREP------------RIALPMVITSLSEVIIILGF 305 (417)
T ss_pred CCCeEEEEccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 44677666543 44444443322 23344566677777776665532 12222223335667888999
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchH
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~ 766 (951)
+.++|.++|+ ...+--.+.+|++||+.++++++.+++.. .+.++++..+++++..+++.+++|++++|+.+.+.....
T Consensus 306 l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~ 383 (417)
T PRK08343 306 AALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGD 383 (417)
T ss_pred HHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999997 56666678899999999999988766532 267889999999999999999999999999988777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 767 CRVFSMFAALAVLLDFLLQITAFVA 791 (951)
Q Consensus 767 vr~Fgl~aa~av~~~~l~~lt~~pa 791 (951)
+|.|++...+|++++.+++=.++--
T Consensus 384 ikgfAitliiGii~s~~iTrp~~~~ 408 (417)
T PRK08343 384 LKGFAITTILGVLIGVLITRPAYGD 408 (417)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876555444433
No 60
>COG4258 Predicted exporter [General function prediction only]
Probab=98.82 E-value=2.5e-07 Score=106.05 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=120.1
Q ss_pred eEEEEccchhHHHHHhhhhchhhHHHH-HHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH-Hh
Q 002221 611 LTLAFSSESSIEEELKRESTADAITIV-ISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF-FS 688 (951)
Q Consensus 611 l~v~f~~e~sl~~el~~~s~~d~~~l~-is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl-~~ 688 (951)
.+..-.|..-..++....++.|+-++. .+.+.+++.+.+.+|+++. . ++|+++++.+..+++.. +.
T Consensus 236 ~ql~~tGp~fyA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~Rv---------l---lLgvls~gig~laglvAt~l 303 (788)
T COG4258 236 AQLLSTGPVFYADYARQQAKQDISTLGVASLLGIILLLLAVFRSLRV---------L---LLGVLSIGIGALAGLVATLL 303 (788)
T ss_pred hhhhhcCCeeeeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchhH---------H---HHHHHHhhHHHHHHHHHHHH
Confidence 344444444556788888888988875 4666777777778888642 2 44555555555444432 23
Q ss_pred hcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHH
Q 002221 689 AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768 (951)
Q Consensus 689 ~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr 768 (951)
.|| ++.. ++.+.-+-++|+.+||+|++....++-....|+- +..+|+-|.+++.-+|+++||+.+.++++|.+|
T Consensus 304 aFg-~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~----rsaaev~paL~lallTtvlayatmlfs~fpgLr 377 (788)
T COG4258 304 AFG-ELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPW----RSAAEVRPALLLALLTTVLAYATMLFSPFPGLR 377 (788)
T ss_pred HHh-hHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChh----HHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 344 3344 4667778889999999999876544322123332 337889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002221 769 VFSMFAALAVLLDFLLQITAFVALI 793 (951)
Q Consensus 769 ~Fgl~aa~av~~~~l~~lt~~palL 793 (951)
.+++|+.+|+..+++....++|.+.
T Consensus 378 QLa~faivGL~aAaltvrfllP~L~ 402 (788)
T COG4258 378 QLAIFAIVGLLAAALTVRFLLPWLC 402 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999865
No 61
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.78 E-value=4.1e-07 Score=111.22 Aligned_cols=163 Identities=17% Similarity=0.246 Sum_probs=136.4
Q ss_pred hhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhh
Q 002221 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (951)
Q Consensus 619 ~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~ 698 (951)
+++.+|+.+. -+.-+++++++|++|+++-++ +..|+.+++..+-=++.++|+++++|+++|+ .
T Consensus 570 p~vg~el~~~---ai~Av~ia~i~IliYI~~RF~-------------~~fav~AviALiHDvlivlg~fsl~~~e~~l-~ 632 (758)
T PRK13023 570 PTVSEQLSRA---GVLAVILSLIGIFIYVWFRFR-------------WQLALGAVLSTLHDVVILSGMFIVFRMEFNL-W 632 (758)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHhCceecH-H
Confidence 4677777763 445577899999999987653 2237888888889999999999999999998 4
Q ss_pred hhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 002221 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (951)
Q Consensus 699 ~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa 775 (951)
....-..++|-+++|.+++..|.||+. +..+.++.+..++.++-.-.+.|++||+++.+++.+..-+.+|.|++...
T Consensus 633 ~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS~TTll~~l~L~ifGg~~i~~Fal~ll 712 (758)
T PRK13023 633 SVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALS 712 (758)
T ss_pred HHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 445556678999999999999999973 45678899999999999889999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 002221 776 LAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 776 ~av~~~~l~~lt~~palL~l~~r 798 (951)
+||++...-++.+-.+++.+...
T Consensus 713 iGiv~GtySSIfIAspl~~~~~~ 735 (758)
T PRK13023 713 VGIIVASYSSIFIAAPLLVQFGL 735 (758)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc
Confidence 99999999998887777765543
No 62
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.2e-07 Score=111.46 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhccccee
Q 002221 636 IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715 (951)
Q Consensus 636 l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~ 715 (951)
-+++++++++|+.+.+|- .|+++.+..++.++..+|+++++|.++++ ....--.|.+|++||.=+
T Consensus 349 gl~g~~~V~vfm~~~Yr~--------------~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNV 413 (506)
T COG0342 349 GLIGLALVAVFMLLYYRL--------------AGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANV 413 (506)
T ss_pred HHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccE
Confidence 456777777777766552 37888888888999999999999999998 555556788888999999
Q ss_pred hhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002221 716 ILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794 (951)
Q Consensus 716 ~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~ 794 (951)
++.+|.+++ +.+.+...++...++++..+|+=+.+||+++-+++.+...-++|-|++..++||+.+++..+++.=.++.
T Consensus 414 lI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~ 493 (506)
T COG0342 414 LIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLN 493 (506)
T ss_pred EeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999988 4689999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhccc
Q 002221 795 FDFLRA 800 (951)
Q Consensus 795 l~~rr~ 800 (951)
+..++.
T Consensus 494 ~~~~~~ 499 (506)
T COG0342 494 LLVGRR 499 (506)
T ss_pred HHhccc
Confidence 665543
No 63
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.75 E-value=2.3e-07 Score=115.57 Aligned_cols=168 Identities=15% Similarity=0.259 Sum_probs=136.8
Q ss_pred chhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhc-----Cc
Q 002221 618 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-----GV 692 (951)
Q Consensus 618 e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~-----G~ 692 (951)
++++.+|+.+. -+.-+++++++|++|+++-|. +..|+.+++..+-=++.++|+++++ |+
T Consensus 1225 GPsVG~EL~~~---AIiALliALi~ILIYI~~RFE-------------W~FAvgAVIALlHDVLItLGifsl~~f~lfgi 1288 (1403)
T PRK12911 1225 SGQLSNKMRTQ---AVIALFGALGIILLYVSLRFE-------------WRYAFSAICALIHDLLATCAVLVALHFFLQKI 1288 (1403)
T ss_pred CchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCe
Confidence 35778888774 455678899999999987552 2347788888888888888887664 99
Q ss_pred ccchhhhhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHH
Q 002221 693 KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRV 769 (951)
Q Consensus 693 ~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~ 769 (951)
++++ .....-.-++|-.++|++++..|.||.. +..+.++-+-.++.++-.--+.||+||+++.+++.+..-+.+++
T Consensus 1289 Efdl-tfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~SINQTLsRTI~TSlTTLLallaLllFGG~sI~~ 1367 (1403)
T PRK12911 1289 QIDL-QAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFN 1367 (1403)
T ss_pred EEcH-HHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcchhHHH
Confidence 9998 3444445678999999999999999974 45677888888888888888899999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 002221 770 FSMFAALAVLLDFLLQITAFVALIVFDFLRAED 802 (951)
Q Consensus 770 Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~ 802 (951)
|++...+||++...-++.+-++++.+..+|++.
T Consensus 1368 FAlALLIGIIvGTYSSIFIASPLll~l~~~~~~ 1400 (1403)
T PRK12911 1368 FAFIMTIGILLGTLSSLYIAPPLLLFMVRKEER 1400 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999999988888877766543
No 64
>COG4258 Predicted exporter [General function prediction only]
Probab=98.69 E-value=8.5e-08 Score=109.78 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=112.9
Q ss_pred EccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCccc
Q 002221 615 FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694 (951)
Q Consensus 615 f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~ 694 (951)
|..-.+-.|++--.-..++.....+.+.+++-+.++.+.|+. |+..++++.+++.+.+..+.+.|+++
T Consensus 630 fvD~ks~~drLfaaYr~~la~~laga~alvl~la~a~rgwRr------------glrvllP~v~a~~~~~A~~a~aGvpl 697 (788)
T COG4258 630 FVDRKSTFDRLFAAYRYVLAGLLAGALALVLCLAVARRGWRR------------GLRVLLPSVLALGCGLAVLAMAGVPL 697 (788)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 444344444443332334444445555555566667676642 67788899999999999999999999
Q ss_pred chhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 002221 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (951)
Q Consensus 695 ~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p~vr~Fgl~a 774 (951)
|+ ...+.-.|++|+|+||+.++-++- .+..|.. .+-.++.++++||.++|.++.+|.+|.++.||+..
T Consensus 698 nL-fhllal~LvlgvG~nYalFfs~~~------~~~ae~l-----ttl~alala~ltTlltfgLLa~Sa~pvLssfG~tl 765 (788)
T COG4258 698 NL-FHLLALVLVLGVGINYALFFSNAG------DPRAEPL-----TTLLALALAMLTTLLTFGLLAFSATPVLSSFGITL 765 (788)
T ss_pred hH-HHHHHHHHHHHcccchhhhhhccc------CCCCchH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHH
Confidence 98 466777899999999999884433 1111111 15677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002221 775 ALAVLLDFLLQITAFVA 791 (951)
Q Consensus 775 a~av~~~~l~~lt~~pa 791 (951)
+.||+++|++..+..|.
T Consensus 766 asGiila~vlApL~mp~ 782 (788)
T COG4258 766 ASGIILAFVLAPLAMPD 782 (788)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999988766554
No 65
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=98.56 E-value=5.9e-07 Score=113.88 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=141.7
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++|+++.+.|+. .+..+....-...+.+++++|++.+...+.+|.. .++-++++.++++.++..+
T Consensus 830 p~g~~~~~~G~~---~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS~~~------------P~~Il~tvPla~iGa~~~L 894 (1009)
T COG0841 830 PSGYTYEWSGES---EQEKEAGGQALLLFALALLVVFLVLAAQYESFSI------------PFIVMLTVPLGLLGALLAL 894 (1009)
T ss_pred CCceEEEecchH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHhhhhHHHHHHHHHH
Confidence 569999999974 3333333444556778888998888888777632 4666788889999999888
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCch-
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP- 765 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p- 765 (951)
.+.|.+++. ...+--.+++||-+.|++++++...+.+ +|.++.||+.+|-+.=..||++|++++++|.+.+++..-.
T Consensus 895 ~l~g~~~~i-~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTtla~ilG~iPLal~~g~G 973 (1009)
T COG0841 895 LLTGLPLDV-YAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTSLAAILGVLPLALSTGAG 973 (1009)
T ss_pred HHhCCCCcH-HHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhccccc
Confidence 999999997 5666667889999999999999988764 7999999999999999999999999999999987765443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002221 766 --ACRVFSMFAALAVLLDFLLQITAFVALIVFDF 797 (951)
Q Consensus 766 --~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~ 797 (951)
.-+.+|+....|++++-++++.+.|.++.+..
T Consensus 974 a~~r~~lgi~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 974 AESRQPLGIAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred ccccCcceEEEechhHHHHHHHHhhhhhhheeee
Confidence 44667788888899999999999999988654
No 66
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.44 E-value=1.3e-07 Score=115.09 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=143.1
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
.+.+++.+.+--.-.+++++....|.+...++-..|+..+.+.. +.+...++++..+.+++..++++.
T Consensus 303 ~~kv~~~~~~~~~~~~~~~~~~l~ds~la~l~~~~v~~~v~i~t------------~s~f~tf~~~~~i~ls~~~a~f~y 370 (999)
T KOG3664|consen 303 NEKVRVVGIDLDLKNELFNELILTDSLLASLSALLVMASVWIYT------------GSAFITFMSIVAICLSLGVALFFY 370 (999)
T ss_pred ccceeeeehhhhhHHHHHHHHhccchHHHHhccccceeEEEEec------------CcHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566666665555678888888888776665555544433322 245667889999999999999888
Q ss_pred h-hcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-------------------cCCCHHHHHHHHHhhhhhHHHH
Q 002221 688 S-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-------------------LELPLETRISNALVEVGPSITL 747 (951)
Q Consensus 688 ~-~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-------------------~~~~~~e~i~~al~~~g~si~~ 747 (951)
. .+|+.+-+++..+.-++++|||.||.|.+...|+|.. .....+......+.+...+|++
T Consensus 371 ~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l~~~~~ll~~~~~l~~~h~~~smfv 450 (999)
T KOG3664|consen 371 AVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLELSDHTELLENVFALTLRHASFSMFV 450 (999)
T ss_pred eeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccccccchhHHHHHHhhhhhhhhHHHHH
Confidence 5 4688888888888889999999999999999994421 0123456677788999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 748 tslT~~~~F~~~~~s~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
|++|++++|+....++.+.+|.|+++|++.+.+++..+++++||..++..++
T Consensus 451 t~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~ 502 (999)
T KOG3664|consen 451 TSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRL 502 (999)
T ss_pred HHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhcc
Confidence 9999999999999999999999999999999999999999999987776544
No 67
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=98.25 E-value=1.1e-05 Score=97.57 Aligned_cols=177 Identities=15% Similarity=0.199 Sum_probs=138.9
Q ss_pred CCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 607 ~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
-++|.-+.|+|+- + -+++..+.-...+.++++++|+.+++++++.+ .+++-+..+.++++.++-.
T Consensus 841 LP~GY~i~~gGQF--E-~~qrA~~~L~vvvP~~lllIfvLl~~~f~sv~------------~alli~~~lP~Al~GGv~~ 905 (1027)
T COG3696 841 LPPGYYIEWGGQF--E-NLQRANKRLKVVVPVSLLLIFVLLYFAFKSVG------------EALLIFSNLPFALIGGVIA 905 (1027)
T ss_pred CCCceEEEecchh--H-HHHHHhhcceehHHHHHHHHHHHHHHHHccch------------HhHHHHhcCcHHHhhhHHH
Confidence 4678999999962 1 22333333333556889999999999988753 2566677777888888888
Q ss_pred HhhcCcccchhhhhHHHHH-hhhhcccceehhHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc--
Q 002221 687 FSAIGVKSTLIIMEVIPFL-VLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI-- 762 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfL-vLgIGvD~~~~l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s-- 762 (951)
+.+.|..++. ..+++|+ +.|+.+-|.++++..+++. .++.+.+|++.++-.+=-.|+++|+++.++|++..+++
T Consensus 906 l~l~G~~lSv--as~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lMTa~~~~lGlvPi~~~~g 983 (1027)
T COG3696 906 LALRGFNLSV--AAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLMTALVILLGLLPILWATG 983 (1027)
T ss_pred hhhcCceEee--hhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHHHHHHHHHhhhhhhhhcC
Confidence 8899999995 4555554 5689999999999999886 47889999999977777778999999999999977654
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 763 -PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 763 -~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
.-...|-.+...-.|++-+-++++..+||++.+..++.
T Consensus 984 ~GsEV~~plA~vviGGl~tst~LtL~vlPaly~~~~~~~ 1022 (1027)
T COG3696 984 AGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALFGKRR 1022 (1027)
T ss_pred CchHhhccchheeEcceeHHHHHHHHHHHHHHHHHHHhh
Confidence 44567888888888999999999999999998776654
No 68
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=97.97 E-value=0.00024 Score=84.80 Aligned_cols=134 Identities=19% Similarity=0.171 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHH
Q 002221 667 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 746 (951)
Q Consensus 667 ~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~ 746 (951)
|-+.+.+.++.+..+--+|+|++.||+++. +-.|+-...+|||+...+|+.-.|--.- .+..+|...++.++..++.
T Consensus 943 WaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~-i~aViLi~sVGigveFtvhv~l~FlTs~--G~rs~R~s~al~~~F~Pv~ 1019 (1143)
T KOG1935|consen 943 WAAGLIVCSLAIMTVELFGFMGLLGIKLSA-IPAVILIASVGIGVEFTVHVALGFLTAL--GTRSQRASSALQHMFVPVS 1019 (1143)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhceeecc-chhHHHHHHhhhchhhhHHHHHHHHHhh--ccchhHhHHhhhhcchhhh
Confidence 345666677777777788999999999999 5677778889999999999988887543 3456688999999999999
Q ss_pred HHHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 002221 747 LASLSEVLAFAVGSFIPMP-ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDK 803 (951)
Q Consensus 747 ~tslT~~~~F~~~~~s~~p-~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~ 803 (951)
..++++..+-+.+.++.+. .||.|.....+-+.+..+-.+.++|.+|++.+.+.|..
T Consensus 1020 hG~lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~pEl~ 1077 (1143)
T KOG1935|consen 1020 HGALSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPKPELS 1077 (1143)
T ss_pred hhHHHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCcccc
Confidence 9999999999999999888 56999999999899999999999999999988776643
No 69
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=97.91 E-value=0.00037 Score=89.11 Aligned_cols=174 Identities=20% Similarity=0.186 Sum_probs=129.0
Q ss_pred eEEEEccchhHHHHHhhhhchhhHHHH-HHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHh-
Q 002221 611 LTLAFSSESSIEEELKRESTADAITIV-ISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS- 688 (951)
Q Consensus 611 l~v~f~~e~sl~~el~~~s~~d~~~l~-is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~- 688 (951)
-.++..|..............|...+. ++.+++|+...+.+|+. ..++..+..+.++..+++|+-.
T Consensus 737 a~~~l~G~~a~~~d~~~~~~~d~~~~~i~~~~~i~ii~~i~~rs~------------~~~~~li~~v~~s~~~a~~l~~~ 804 (937)
T COG2409 737 AKIYLGGTAAWWLDIRDWLTHDLPLVVIITLCLIFIILLILLRSV------------VAPAVLVGTVLLSYGAALGLSVL 804 (937)
T ss_pred CEEEEechHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHhhhhhh
Confidence 456777777776667666677777654 44556666665554442 2244555667788888887743
Q ss_pred ----hcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC
Q 002221 689 ----AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (951)
Q Consensus 689 ----~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~ 763 (951)
.+|.++....-.+.-.+++++|+||.+.+++|++|+. .+. .++ +.++++.+|.-++..++.-+.+|+.+.+++
T Consensus 805 ~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g~-~~~-ii~a~~~tg~Vit~ag~i~~~t~~~l~~s~ 882 (937)
T COG2409 805 IWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAGL-RTG-IIRAMRGTGGVITAAGLIFAATMASLVFSD 882 (937)
T ss_pred hhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhcccc-chh-hhhhhccCCchHHHHHHHHHHHHHHHHHhh
Confidence 3566655432222233678999999999999999986 445 555 999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhc
Q 002221 764 MPACRVFSMFAALAVLLDFLLQITAF-VALIVFDFL 798 (951)
Q Consensus 764 ~p~vr~Fgl~aa~av~~~~l~~lt~~-palL~l~~r 798 (951)
+..+.+-|...++|++++-++.-+++ ||+.++.+|
T Consensus 883 ~~~l~qig~~i~~g~l~dt~v~r~~~vPa~~~l~~~ 918 (937)
T COG2409 883 LRVLGQIGTTIGLGLLLDTLVVRPFMVPAIAALLGR 918 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 99999999999999999988887666 566666554
No 70
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=94.69 E-value=0.0087 Score=61.05 Aligned_cols=95 Identities=26% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHhhCCCCCCCCCCCHHHHHHHHHHHH-hhhhh-ccC----ChhHHhhHhhhccccccCCCCCcceeeeeecccCCCee
Q 002221 86 KVQSLCPTITGNVCCTEDQFDTLRTQVQ-QAIPF-LVG----CPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLT 159 (951)
Q Consensus 86 ~l~~~Cp~~~~~~CC~~~Q~~~l~~~~~-~~~~~-~~~----CpaC~~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~~ 159 (951)
.|...|..+....||+.++.+.+..... .+..+ ..+ =+.|.+=|.++.|-+-|||++..+... ..+..
T Consensus 17 ~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~~~~------~~~~~ 90 (167)
T PF03024_consen 17 DLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHWQAE------DRKTR 90 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCccccccccC------CcCCc
Confidence 5666899998899999999999998877 33322 122 379999999999999999999999211 11123
Q ss_pred EEEEEEEEcchhchHHhhccccCcccccc
Q 002221 160 VDGIDYYITDTFGQGLYESCKDVKFGTMN 188 (951)
Q Consensus 160 V~~~~~~v~~~~a~~~y~SCk~v~~~~~~ 188 (951)
+..+- |=++|=+..|+.||+..+-..+
T Consensus 91 ~~~~P--LC~~~Cd~wf~aCk~d~tc~~~ 117 (167)
T PF03024_consen 91 IRGVP--LCASFCDDWFEACKDDYTCGSN 117 (167)
T ss_dssp -----------------------------
T ss_pred cCCCC--cCHHHHHHHHHHhhhHHhccCc
Confidence 55555 7899999999999998865444
No 71
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=92.29 E-value=0.036 Score=70.82 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=109.9
Q ss_pred hHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcCcccchhhh
Q 002221 620 SIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIM 699 (951)
Q Consensus 620 sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~i~~ 699 (951)
+..+.........+..+.++.+.+|+.....++-- ++| +++-++.+.+.++--+|+|.++|+.+|. .+
T Consensus 1009 ~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~-------~~s----s~i~~~~~~~~~v~l~g~m~~~~I~~Na-vS 1076 (1201)
T KOG1933|consen 1009 SFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLD-------VDS----SLIMVLVDEMILVNLVGFMYLWGISLNA-VS 1076 (1201)
T ss_pred hHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccc-------ccc----ceeeeeehhhhhhhHHHHHHhhceeehh-hh
Confidence 33333333333333345566666666655544321 333 3444566677778888999999999998 45
Q ss_pred hHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHH-HHHHHHHHHhhcccCch--HHHHHHHHHHH
Q 002221 700 EVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLA-SLSEVLAFAVGSFIPMP--ACRVFSMFAAL 776 (951)
Q Consensus 700 ~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~t-slT~~~~F~~~~~s~~p--~vr~Fgl~aa~ 776 (951)
.+--.+-+||+|++..||+|.+..... .+..+|..+++...|.+++-. ++|...+-..+.+.+.. .+..|.++.++
T Consensus 1077 ~vNlvm~vgi~vef~~hi~~sf~~s~~-~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~~~l~~ 1155 (1201)
T KOG1933|consen 1077 LVNLVMSVGIAVEFCVHITHSFATSSG-PDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFRMYLGI 1155 (1201)
T ss_pred hhhhhhhcchhhhHHHHhhcceeeccC-CchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeehHHHHH
Confidence 565678889999999999999876543 388899999999999876533 34555555555554444 45666677776
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q 002221 777 AVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 777 av~~~~l~~lt~~palL~l~~rr 799 (951)
.++-+.-. +.++|.+|++.++-
T Consensus 1156 ~l~~a~hG-liflpvlls~~g~~ 1177 (1201)
T KOG1933|consen 1156 VLVGALHG-LIFLPVLLSLLGPE 1177 (1201)
T ss_pred HHHHheee-eeehhhHHHhcCCc
Confidence 65555444 88899999987743
No 72
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=57.53 E-value=5.9 Score=49.64 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.4
Q ss_pred HHHHHHHhchhhhccchHHHHHHHHHHHHHH
Q 002221 370 MSNFYRKYGKWVARNPTLVLSLSMALVLLLC 400 (951)
Q Consensus 370 l~~~F~~lG~~va~~P~~vl~~~llv~~~l~ 400 (951)
+.|+|+..|+||++|||=||...+.+++.+.
T Consensus 2 ~~rlf~~hg~fcashpweviv~~~tlt~c~l 32 (886)
T TIGR00920 2 LSRLFRAHGQFCASHPWEVIVATLTLTICML 32 (886)
T ss_pred chhHhhhhcchhcCCCceehhhHHHHHHHHe
Confidence 5689999999999999999999988888653
No 73
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=50.42 E-value=3.6e+02 Score=30.34 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=15.0
Q ss_pred CeEEEEccchhHHHHHhhhhchhhHH
Q 002221 610 NLTLAFSSESSIEEELKRESTADAIT 635 (951)
Q Consensus 610 ~l~v~f~~e~sl~~el~~~s~~d~~~ 635 (951)
++-.++...+++.+++.+.....+..
T Consensus 76 d~G~S~~~~~~V~~~i~~~lp~Tl~L 101 (306)
T PRK15081 76 DFGTSMVSRRPVSEEIASRFMPTLWL 101 (306)
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34445555567777777765544443
No 74
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=48.95 E-value=3.9e+02 Score=29.20 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=30.1
Q ss_pred ccchhhhhHHHHH--hhhhcccceehhHHHHHHHh------------cCCCHHHHHH----HHHhhhhhHHHHHHHHH
Q 002221 693 KSTLIIMEVIPFL--VLAVGVDNMCILVHAVKRQQ------------LELPLETRIS----NALVEVGPSITLASLSE 752 (951)
Q Consensus 693 ~~~~i~~~vipfL--vLgIGvD~~~~l~~~~~~~~------------~~~~~~e~i~----~al~~~g~si~~tslT~ 752 (951)
++++ -.++|.. ++|=...-.-+-.++|.++- -|.++.||.. ++++..-.|.+-+.-|.
T Consensus 120 ~~~~--r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~ai~~al~P~i~~m~~v 195 (250)
T PF03649_consen 120 WFDP--RYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIRRAIRAALIPTINSMKTV 195 (250)
T ss_pred CCCh--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhHhHHHhhhhh
Confidence 4554 6778864 33333444444556665431 2677888854 45555555544433333
No 75
>PRK15133 microcin C ABC transporter permease YejB; Provisional
Probab=48.72 E-value=4.8e+02 Score=30.15 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=25.9
Q ss_pred hhHHHHHhhhhccc-ceehhHHHH-HHH----------hcCCCHHHH-HHHHHhhhhhHHHHH
Q 002221 699 MEVIPFLVLAVGVD-NMCILVHAV-KRQ----------QLELPLETR-ISNALVEVGPSITLA 748 (951)
Q Consensus 699 ~~vipfLvLgIGvD-~~~~l~~~~-~~~----------~~~~~~~e~-i~~al~~~g~si~~t 748 (951)
..++|.++++++.- ....++.+- .++ .+|.+...- .+++++.+.+|++..
T Consensus 227 ~liLP~i~L~l~~~~~~~r~~R~~~le~l~~dYV~~ArakGls~~~I~~rH~LrNal~Piit~ 289 (364)
T PRK15133 227 HITLPVLATVIGGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAG 289 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcCCCcceehHHhhHHhhHHHHHHH
Confidence 45788888876632 222222221 111 135544443 367777777776543
No 76
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=48.49 E-value=25 Score=31.64 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 002221 295 ILYIILVSLFFGWGFFHRKRERSRSFRMKPLV 326 (951)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (951)
.+..+|+++++.|+..+.+|+|++.+.+++..
T Consensus 39 vI~~iFil~VilwfvCC~kRkrsRrPIYrPvI 70 (94)
T PF05393_consen 39 VICGIFILLVILWFVCCKKRKRSRRPIYRPVI 70 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence 34445566667777667777777777777643
No 77
>PRK10352 nickel transporter permease NikB; Provisional
Probab=45.40 E-value=4.1e+02 Score=29.99 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=15.6
Q ss_pred CeEEEEccchhHHHHHhhhhchhhHH
Q 002221 610 NLTLAFSSESSIEEELKRESTADAIT 635 (951)
Q Consensus 610 ~l~v~f~~e~sl~~el~~~s~~d~~~ 635 (951)
++-.++...+.+.+++.+.....+..
T Consensus 79 d~G~S~~~g~~V~~~i~~~l~~Tl~L 104 (314)
T PRK10352 79 DFGISFATQRPVLDDLLNFLPATLEL 104 (314)
T ss_pred CCCccCCCCCcHHHHHHHHHHHHHHH
Confidence 44455655667777777765554443
No 78
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=44.17 E-value=4.5e+02 Score=29.99 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=17.3
Q ss_pred CeEEEEccchhHHHHHhhhhchhhHHHHHH
Q 002221 610 NLTLAFSSESSIEEELKRESTADAITIVIS 639 (951)
Q Consensus 610 ~l~v~f~~e~sl~~el~~~s~~d~~~l~is 639 (951)
++-.++...+++.+++.+.....+...+.+
T Consensus 77 d~G~S~~~~~pV~~~i~~~lp~Tl~L~~~a 106 (339)
T PRK10914 77 DLGISLKSRIPVWDEFVPRFKATLELGVCA 106 (339)
T ss_pred CCcCcCcCCCcHHHHHHHHhHHHHHHHHHH
Confidence 344455555678888877665554443333
No 79
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=41.98 E-value=3.7e+02 Score=30.06 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=15.0
Q ss_pred cCCCHHHH-HHHHHhhhhhHHHHHHHHH
Q 002221 726 LELPLETR-ISNALVEVGPSITLASLSE 752 (951)
Q Consensus 726 ~~~~~~e~-i~~al~~~g~si~~tslT~ 752 (951)
.|.+..+. .++.++.+.+|++ +.+..
T Consensus 212 ~G~s~~~i~~~hil~na~~p~i-t~l~~ 238 (306)
T PRK09471 212 KGLPMRRIILRHALKPALLPVL-SYMGP 238 (306)
T ss_pred cCCCcceehHHHhHHhhHHHHH-HHHHH
Confidence 35555444 4677777777765 44433
No 80
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=39.29 E-value=72 Score=30.27 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 002221 666 VLLGLSGVVLVMLSVLGSVGFFSAIGVKST 695 (951)
Q Consensus 666 ~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~ 695 (951)
.++..+.++..+++++++.+++.|+|.-.+
T Consensus 36 ~~im~ifmllG~L~~l~S~~VYfwIGmlSt 65 (114)
T PF11023_consen 36 PIIMVIFMLLGLLAILASTAVYFWIGMLST 65 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 334455566668889999999999997544
No 81
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=38.31 E-value=1.6e+02 Score=28.08 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 002221 763 PMPACRVFSMFAALAVLLDF 782 (951)
Q Consensus 763 ~~p~vr~Fgl~aa~av~~~~ 782 (951)
+.|..++.++..+.++.+..
T Consensus 89 ~~p~~~~a~~~l~~~~~~~l 108 (111)
T PF09946_consen 89 SYPEYTDAGFVLAFSLAFML 108 (111)
T ss_pred cChhHhHHHHHHHHHHHHHH
Confidence 67777777777666655444
No 82
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=37.74 E-value=5.5e+02 Score=29.09 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=27.9
Q ss_pred hhhhHHHHHhhhhcc-cceehhHHH---------HHHH--hcCCCHHH-HHHHHHhhhhhHHH
Q 002221 697 IIMEVIPFLVLAVGV-DNMCILVHA---------VKRQ--QLELPLET-RISNALVEVGPSIT 746 (951)
Q Consensus 697 i~~~vipfLvLgIGv-D~~~~l~~~---------~~~~--~~~~~~~e-~i~~al~~~g~si~ 746 (951)
+-..++|.+.|++.- .....++.+ |-+. .+|.+..+ -.+|+++.+..|+.
T Consensus 180 ~~h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~~H~lrNaliP~i 242 (317)
T COG0601 180 LKHLILPALTLGLVSLAGIARLTRSSMLEVLNQDYVRTARAKGLSERRILFKHALRNALLPVI 242 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCCcceehHHhhhHhhHHHHH
Confidence 356788988888653 222222221 1111 14555443 45588888877775
No 83
>PTZ00370 STEVOR; Provisional
Probab=36.92 E-value=79 Score=34.91 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=8.5
Q ss_pred HHHHHHHHhhcccC
Q 002221 750 LSEVLAFAVGSFIP 763 (951)
Q Consensus 750 lT~~~~F~~~~~s~ 763 (951)
.+++++++.++|-|
T Consensus 243 agtAAtaAsaaF~P 256 (296)
T PTZ00370 243 AGTAASAASSAFYP 256 (296)
T ss_pred cchHHHHHHHhhcc
Confidence 44566666666655
No 84
>PRK02935 hypothetical protein; Provisional
Probab=36.16 E-value=1.2e+02 Score=28.39 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcccch
Q 002221 666 VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (951)
Q Consensus 666 ~~lgl~gil~v~~sv~~s~Gl~~~~G~~~~~ 696 (951)
.++..+.++.-.+++++|.+++.|.|.-.+-
T Consensus 37 ~~~m~ifm~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 37 IIIMTIFMLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3344555667778888899999999975443
No 85
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=35.51 E-value=6.7e+02 Score=27.99 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhcCCCHHHHHHHHHhhhhhHHHHHHHHHH
Q 002221 674 VLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEV 753 (951)
Q Consensus 674 l~v~~sv~~s~Gl~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~~~~~~e~i~~al~~~g~si~~tslT~~ 753 (951)
+.+.++.-..+=+-...|+|+=. +.++|.|-+.-|+.-+.-..--...-..+++.++.-.+.+.+...++..+-+-..
T Consensus 141 ~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~~~~~~~~~~~~~r~~~~v~~~ell~l 218 (305)
T COG3301 141 LGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTRENPHSTESKFLHRFEIPVVVTELLLL 218 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444667888854 5788887777766543322211111122234555666788888888988888888
Q ss_pred HHHHhhc-ccCchHHHHHH
Q 002221 754 LAFAVGS-FIPMPACRVFS 771 (951)
Q Consensus 754 ~~F~~~~-~s~~p~vr~Fg 771 (951)
.+|+.+. +-+.-+.|.+.
T Consensus 219 a~f~~l~~~G~~a~~~a~~ 237 (305)
T COG3301 219 AAFFVLLSLGGVAAARALA 237 (305)
T ss_pred HHHHHHHHhCcHHHHHHHH
Confidence 8888764 44555555443
No 86
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=33.73 E-value=57 Score=28.08 Aligned_cols=48 Identities=15% Similarity=0.474 Sum_probs=28.9
Q ss_pred hHHHHHhhCCCCC---CCCCCCHHHH---------HHHHHHHHhhh-----hhccCChhHHhhHh
Q 002221 83 LSSKVQSLCPTIT---GNVCCTEDQF---------DTLRTQVQQAI-----PFLVGCPACLRNFL 130 (951)
Q Consensus 83 ~~~~l~~~Cp~~~---~~~CC~~~Q~---------~~l~~~~~~~~-----~~~~~CpaC~~Nf~ 130 (951)
....+....-++. +..||-.... +..+.+++.+. .++.-||+|..+|+
T Consensus 21 ~~~l~~~~g~~~~~~~~~~CCG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~~lr 85 (85)
T PF02754_consen 21 LRKLLNKLGIEVVIPENQQCCGAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPSCYMQLR 85 (85)
T ss_pred HHHHHHHcCceeeecCCCCCCChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChhHHHhhC
Confidence 3444454444432 4689976654 33344444443 47789999999874
No 87
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=28.82 E-value=4e+02 Score=27.05 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=24.9
Q ss_pred hHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHH---HHHHHHHHhhcccCchHHHHH
Q 002221 717 LVHAVKRQ-QLELPLETRISNALVEVGPSITLAS---LSEVLAFAVGSFIPMPACRVF 770 (951)
Q Consensus 717 l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~ts---lT~~~~F~~~~~s~~p~vr~F 770 (951)
...+.++. .++..+.+.+.+..--+-..+++-. +|+++|++++ +|++|..
T Consensus 54 ~l~~~q~~~~~G~~P~~~ll~g~~~~vagiLLl~PGFvTd~lGllll----iP~~R~~ 107 (158)
T COG3030 54 TLLRAQAALASGEVPGAELLDGLLLIIAGILLLIPGFVTDILGLLLL----IPPTRKL 107 (158)
T ss_pred HHHHHHHHHHccCCcHHHHHHhHHHHHHHHHHHcchHHHHHHHHHHh----hhhHHHH
Confidence 33444433 3555555555554443333333332 5666666655 3666644
No 88
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.38 E-value=5.7e+02 Score=34.56 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=5.7
Q ss_pred HHHHHHHHHhhCCC
Q 002221 641 LVMFAYISLTLGDT 654 (951)
Q Consensus 641 llmflyv~~~l~~~ 654 (951)
+++.+|++++|.++
T Consensus 31 lllAlfL~lALiSY 44 (1355)
T PRK10263 31 VLFAVWLMAALLSF 44 (1355)
T ss_pred HHHHHHHHHHHHhC
Confidence 33334444444443
No 89
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.06 E-value=1.1e+02 Score=28.01 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHhhc
Q 002221 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGL 403 (951)
Q Consensus 365 ~~~~~l~~~F~~lG~~va~~P~~vl~~~llv~~~l~~Gl 403 (951)
......++.-.....+|..|||..+++.+.+.+++++-+
T Consensus 53 ~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 53 QAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 466677788888889999999999999888777776644
No 90
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=25.68 E-value=3.1e+02 Score=31.58 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.0
Q ss_pred hcccceehhHHHHHHHh
Q 002221 709 VGVDNMCILVHAVKRQQ 725 (951)
Q Consensus 709 IGvD~~~~l~~~~~~~~ 725 (951)
=|.||.+++.++.-|.+
T Consensus 64 GGlDylV~~Aek~LRk~ 80 (364)
T PF03605_consen 64 GGLDYLVQIAEKILRKN 80 (364)
T ss_pred CChhHHHHHHHHHHHhC
Confidence 37899999999988765
No 91
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.88 E-value=3e+02 Score=34.39 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhcCcccc
Q 002221 674 VLVMLSVLGSVGFFSAIGVKST 695 (951)
Q Consensus 674 l~v~~sv~~s~Gl~~~~G~~~~ 695 (951)
...+.|++|++-.-++||....
T Consensus 398 ~~gi~sii~G~lyG~fFG~~~~ 419 (646)
T PRK05771 398 YLGISTIIWGLLTGSFFGFSLP 419 (646)
T ss_pred HHHHHHHHHHHHHHhHhcCccc
Confidence 3334455555544467776543
No 92
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.80 E-value=75 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=9.3
Q ss_pred HHHHHhhhhcc--cceehhHH
Q 002221 701 VIPFLVLAVGV--DNMCILVH 719 (951)
Q Consensus 701 vipfLvLgIGv--D~~~~l~~ 719 (951)
.+++|++||++ -++.+.++
T Consensus 77 tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 77 TLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 44456665543 34444443
No 93
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=4.4e+02 Score=31.99 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=19.3
Q ss_pred cccCcccCCCcchHHHHHhhhcCc
Q 002221 922 QLCSISQCDSNSLLNEVELSSHFV 945 (951)
Q Consensus 922 ~ic~~~~c~~~Sl~~~~~~~~~~~ 945 (951)
.|-|.+||...++.+.+..+....
T Consensus 368 AIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 368 AILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred EEECCCCCCHHHHHHHHHhccCCC
Confidence 566789999999999998765543
No 94
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=23.52 E-value=5.9e+02 Score=24.49 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=22.0
Q ss_pred hHHHHHHH-hcCCCHHHHHHHHHhhhhhHHHHHH---HHHHHHHHhhcccCchHHHHH
Q 002221 717 LVHAVKRQ-QLELPLETRISNALVEVGPSITLAS---LSEVLAFAVGSFIPMPACRVF 770 (951)
Q Consensus 717 l~~~~~~~-~~~~~~~e~i~~al~~~g~si~~ts---lT~~~~F~~~~~s~~p~vr~F 770 (951)
...+.++. +++..+.+.+.+......-.+++-. +|+++|++++ +|++|.+
T Consensus 49 ~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~LLi~PGflTD~lGllLl----lP~~R~~ 102 (119)
T PF04186_consen 49 ALRRLQQSLRQGEMPGEELLDGALLAVGGVLLIIPGFLTDILGLLLL----LPPVRRL 102 (119)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hhhhHHH
Confidence 34444433 2445555555544433333333322 5555555443 2555543
No 95
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=23.30 E-value=1.6e+03 Score=28.69 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002221 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (951)
Q Consensus 768 r~Fgl~aa~av~~~~l~~lt~~palL~l~~r 798 (951)
+.+..++..+++-..+..+.++|.++.+...
T Consensus 211 ~~~~~~~~~~ilg~~lsa~~llP~~~~~l~~ 241 (843)
T PF09586_consen 211 KKILRFIGSSILGVGLSAFLLLPTILSLLQS 241 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667777777777788999999986543
No 96
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=20.55 E-value=1.9e+02 Score=32.38 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcCcccchhhhhHHHHHhhhhcccceeh
Q 002221 670 LSGVVLVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCI 716 (951)
Q Consensus 670 l~gil~v~~sv~~s~Gl~~-~~G~~~~~i~~~vipfLvLgIGvD~~~~ 716 (951)
+..++++...+++++.+.+ .+|+.-.+ .....|.++++..++.+=+
T Consensus 194 isaVli~VI~ii~~~sv~~~klGl~~gl-sVtfFPmIILawTIERmSi 240 (313)
T PF14402_consen 194 ISAVLIVVILIIAAFSVLSYKLGLEEGL-SVTFFPMIILAWTIERMSI 240 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCC-eeehHHHHHHHHHHHHHHh
Confidence 3344555555555555553 36666655 5678899999888775433
No 97
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=20.54 E-value=1.1e+03 Score=25.66 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhcCc-ccchhhhhHHHH--HhhhhcccceehhHHHHHHHh------------cCCCHHHHHH----
Q 002221 675 LVMLSVLGSVGFFSAIGV-KSTLIIMEVIPF--LVLAVGVDNMCILVHAVKRQQ------------LELPLETRIS---- 735 (951)
Q Consensus 675 ~v~~sv~~s~Gl~~~~G~-~~~~i~~~vipf--LvLgIGvD~~~~l~~~~~~~~------------~~~~~~e~i~---- 735 (951)
.+.++....++++.+.+. ++++ -.++|. +++|=+..-.-+-.+++.++- -|.+++|++.
T Consensus 95 s~~~~~~~~l~~~vl~~~~~~~p--~y~IPl~GMiiGNsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~~~A~~~~~r 172 (248)
T TIGR00245 95 AFTTTTIVTLAVLIIPKVIKFEP--IYVIPLMGMVIGNTMNTISLALNRLISMVKSERDEIQGYLSLGATPKQAIAPFIR 172 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCc--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCHHHHHHHHHH
Confidence 333444444444434333 4554 578886 444444455555667776641 1456666654
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 002221 736 NALVEVGPSITLASLSEVLAF 756 (951)
Q Consensus 736 ~al~~~g~si~~tslT~~~~F 756 (951)
++++..-.|.+=+..|..+.+
T Consensus 173 ~Ai~aaliP~insm~~vGlV~ 193 (248)
T TIGR00245 173 NAIKASLIPTVNSTKTVGLVS 193 (248)
T ss_pred HHHHHHhhchHHhcchhheee
Confidence 445555455444444443333
Done!