Query 002221
Match_columns 951
No_of_seqs 387 out of 2053
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qnt_A Niemann-PICK C1-like pr 100.0 1.8E-70 6.3E-75 580.8 14.2 235 44-285 5-263 (265)
2 3gkj_A Niemann-PICK C1 protein 100.0 2.4E-68 8.1E-73 555.2 8.3 213 50-267 2-230 (232)
3 4dx5_A Acriflavine resistance 99.7 1.7E-16 5.9E-21 203.0 30.3 262 608-899 318-599 (1057)
4 2v50_A Multidrug resistance pr 99.7 7.3E-17 2.5E-21 206.1 25.8 253 608-890 318-587 (1052)
5 3ne5_A Cation efflux system pr 99.7 6.1E-16 2.1E-20 197.8 21.0 260 608-904 323-609 (1054)
6 3aqp_A Probable secdf protein- 99.7 1.6E-15 5.5E-20 186.0 22.0 177 608-800 251-429 (741)
7 4dx5_A Acriflavine resistance 99.5 1.3E-13 4.3E-18 176.6 22.4 177 608-800 852-1033(1057)
8 3aqp_A Probable secdf protein- 99.5 1.2E-13 4E-18 169.5 21.2 174 609-800 551-727 (741)
9 3ne5_A Cation efflux system pr 99.5 2E-13 6.7E-18 174.7 16.3 177 607-799 857-1048(1054)
10 2v50_A Multidrug resistance pr 99.4 4.2E-13 1.4E-17 171.5 16.2 175 608-799 851-1030(1052)
11 1loi_A Cyclic 3',5'-AMP specif 20.4 25 0.00087 22.5 0.3 10 129-139 3-12 (26)
No 1
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens}
Probab=100.00 E-value=1.8e-70 Score=580.76 Aligned_cols=235 Identities=32% Similarity=0.623 Sum_probs=199.7
Q ss_pred cccCCCCcceeecccCCCCCC-------CCcccCCCCCCCCCCChhhHHHHHhhCCCCC---CC-CCCCHHHHHHHHHHH
Q 002221 44 GEVKHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GN-VCCTEDQFDTLRTQV 112 (951)
Q Consensus 44 ~~~~~~~~~C~~yg~C~~~~~-------~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~Q~~~l~~~~ 112 (951)
.+.+|++|+|+|||+||++++ ++++||+||++|++++++++++|+++||+++ +. +|||++|+++|++||
T Consensus 5 ~~~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl 84 (265)
T 3qnt_A 5 YTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASL 84 (265)
T ss_dssp SCCCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHH
T ss_pred ccCccCCCcceEecccCCCccccccccCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCCHHHHHHHHHHH
Confidence 345789999999999999875 8999999999999999999999999999976 24 999999999999999
Q ss_pred HhhhhhccCChhHHhhHhhhccccccCCCCCcceeeeeecccC--CCeeEEEEEEEEcchhchHHhhccccCcccccchh
Q 002221 113 QQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS--NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTR 190 (951)
Q Consensus 113 ~~~~~~~~~CpaC~~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~--~~~~V~~~~~~v~~~~a~~~y~SCk~v~~~~~~~~ 190 (951)
++|+++|+|||||++||++|||+|||||+||+||+||++.+.+ ++..|+||||||+++||+++|||||||+||+||++
T Consensus 85 ~~a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~ 164 (265)
T 3qnt_A 85 SITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATL 164 (265)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCB
T ss_pred HHHHHHhCcChHHHHHHHHHhcCCCCCCCcccceeeEeecccCCCCcceEEEEEEEECHHHhhhHhhhhcCcccccccch
Confidence 9999999999999999999999999999999999999987533 44569999999999999999999999999999999
Q ss_pred hhhhcCC--Ccc--CHHHHHHhhcccCCCCCCCCceeEEecCCCC---CCCCcccCCCCCcCcCCC----CCCcccCCCC
Q 002221 191 ALDFIGG--GAQ--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAP---ELSGMIPMNVSAYSCADG----SLGCSCGDCT 259 (951)
Q Consensus 191 am~~~gg--~a~--~~~~~l~flG~~~~~~~~~sPf~inf~~~~~---~~~~~~~~~~~~~~C~~~----~~~CsC~dC~ 259 (951)
|||+||| ||+ ||++||+|||+++ +++|||||||++++. .+.+|+|||..+++|||. +++|||+||+
T Consensus 165 Am~l~cG~~gA~~Cn~~~wl~flG~~~---n~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~ 241 (265)
T 3qnt_A 165 AVGTMCGVYGSALCNAQRWLNFQGDTG---NGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCA 241 (265)
T ss_dssp TTGGGSTTSCSSSCCHHHHHHHHTCTT---TTCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCG
T ss_pred hhhhhcCCcCcCCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCccCCCCceECCCCCcCCCCCCCCCCCCEecccch
Confidence 9999998 787 9999999999985 379999999997632 135899999999999975 4799999999
Q ss_pred CCCCCCCCCCCCCCCCCceEeecCCc
Q 002221 260 SSPVCSSTAPPPHKSSSCSVKMGSLN 285 (951)
Q Consensus 260 ~~~sC~~~~~~~~~~~~c~~~~~~~~ 285 (951)
+ |||.+|++|+.+.+ |+|+||+
T Consensus 242 ~--sCp~~p~~p~~~~p--~~I~gld 263 (265)
T 3qnt_A 242 A--SCPAIARPQALDST--FYLGQMP 263 (265)
T ss_dssp G--GCCC-------------------
T ss_pred h--hcCCCCCCCCCCCC--cEEEeee
Confidence 9 99988777666665 7788876
No 2
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A*
Probab=100.00 E-value=2.4e-68 Score=555.20 Aligned_cols=213 Identities=35% Similarity=0.704 Sum_probs=193.2
Q ss_pred CcceeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC---CCCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 002221 50 EEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GNVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (951)
Q Consensus 50 ~~~C~~yg~C~~~~~~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~---~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (951)
+++|+|||+||++++++++||+||++|++++++++++|+++||+++ +.+|||++|+++|++||++|+++|+|||||+
T Consensus 2 ~~~C~~yg~Cg~~~~~~~l~C~~~~~a~~~~~~~~~~L~~~Cp~~~~~~~~~CC~~~Ql~~L~~nl~~a~~il~rCPaC~ 81 (232)
T 3gkj_A 2 AQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCF 81 (232)
T ss_dssp -CCCSEEEEEEEEETTEEEEEECCSCCEECCGGGHHHHHHHCGGGCSTTCEESCCHHHHHHHHHTTHHHHHHHTTCHHHH
T ss_pred CCcceecCccCCCCCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCHHHHHHHHHHHHHHHHhcCcChHHH
Confidence 5699999999998899999999999999999999999999999976 2499999999999999999999999999999
Q ss_pred hhHhhhccccccCCCCCcceeeeeecc----c--CCCeeEEEEEEEEcchhchHHhhccccCcccccchhhhhhc-CCCc
Q 002221 127 RNFLNLFCELTCSPNQSLFINVTSVSK----V--SNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI-GGGA 199 (951)
Q Consensus 127 ~Nf~~~~C~~tCsP~Qs~F~~vt~~~~----~--~~~~~V~~~~~~v~~~~a~~~y~SCk~v~~~~~~~~am~~~-gg~a 199 (951)
+||++|||+|||||+||+||+||++.+ . +++..|+||+|||+++||+++|||||||+||+||++|||+| ||||
T Consensus 82 ~Nf~~l~C~~TCSP~QS~Fl~vt~t~~~~d~~~~~~~~~V~ev~y~v~~~fa~~~YdSCkdV~~p~t~~~Am~l~CG~ga 161 (232)
T 3gkj_A 82 YNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDA 161 (232)
T ss_dssp HHHHHHHHHHHHCTTHHHHEEEEEEEEEECTTTCCEEEEEEEEEEEECHHHHHHHHHHHTTCBCTTSSSBTHHHHSSSCT
T ss_pred HHHHHHhcCCCCCCccccceeeEeccccccccccCCcceEEEEEEEECHHHHHHHhhhhhCcccccccchhHHhhcCCCC
Confidence 999999999999999999999999865 2 23346999999999999999999999999999999999999 5578
Q ss_pred c--CHHHHHHhhcccCCCCCCCCceeEEecCCCCCCCCcccCCCCCcCcCC----CCCCcccCCCCCCCCCCCC
Q 002221 200 Q--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCAD----GSLGCSCGDCTSSPVCSST 267 (951)
Q Consensus 200 ~--~~~~~l~flG~~~~~~~~~sPf~inf~~~~~~~~~~~~~~~~~~~C~~----~~~~CsC~dC~~~~sC~~~ 267 (951)
+ ||++||+|||+++ +|+|||||||++++...+||+|||..+++||+ .+++|||+||++ |||.+
T Consensus 162 ~~C~~~~wl~flG~~~---ng~sPfqInf~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~--sCp~~ 230 (232)
T 3gkj_A 162 DACQATNWIEYMFNKD---NGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSI--VCGPK 230 (232)
T ss_dssp TTCCHHHHHHHHTCGG---GSSSSSEEEEEECSSCBTTBCCBCCCCCCTTSCSBTTBCCCCGGGCGG--GC---
T ss_pred CCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCCccceECCCCCcCCCCCCCCCCCCEECccchh--hcCCC
Confidence 7 9999999999985 37899999999876555799999999999984 467999999999 99954
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.75 E-value=1.7e-16 Score=202.99 Aligned_cols=262 Identities=15% Similarity=0.166 Sum_probs=188.6
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++++++.+.++.+ +.+++..+.-...++++++++++++++.||+++ .+++.++++.+++++++|++
T Consensus 318 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~------------~~li~~~~ip~~~~~~~~~l 383 (1057)
T 4dx5_A 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1057)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5688887766544 222333233334567788888888888887742 36788899999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-c-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC--
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~-~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~-- 763 (951)
.++|+++|. ++.+...+++|++|||++|++++|+++. . +.++.+++.+++++.+.|+++|++|++++|+.+++++
T Consensus 384 ~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~ 462 (1057)
T 4dx5_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1057)
T ss_dssp HHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHH
T ss_pred HHhCCcHHH-HHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999997 5677778899999999999999999874 3 8999999999999999999999999999999999987
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhhh
Q 002221 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHAT 842 (951)
Q Consensus 764 -~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya~ 842 (951)
.+.++.||+..++|+++++++++|++|+++.+..++...... ++. . .......+..+.+ +.+.|.+
T Consensus 463 ~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~--------~~~-~---~~~~~~~~~~~~~-~~~~y~~ 529 (1057)
T 4dx5_A 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDH--------GEG-K---KGFFGWFNRMFEK-STHHYTD 529 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCC--------STT-C---CSHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--------ccc-c---hhHHHHHHHHHHH-HHHHHHH
Confidence 677999999999999999999999999999987665321100 000 0 0000000001111 1223333
Q ss_pred ---hhccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHHH---HHHHHhhcC
Q 002221 843 ---ILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQGY---FNNISEHLR 899 (951)
Q Consensus 843 ---~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~y---f~~~~~~l~ 899 (951)
+.+++ |+.++++++++++++++++.+++.++-|. ..+|+++.+.+. .+.+++.+.
T Consensus 530 ~l~~~lr~--~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~ 599 (1057)
T 4dx5_A 530 SVGGILRS--TGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYL 599 (1057)
T ss_dssp HHHHHHHS--CTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 44554 44566777788888888888888876543 357777755443 344455554
No 4
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.74 E-value=7.3e-17 Score=206.13 Aligned_cols=253 Identities=15% Similarity=0.137 Sum_probs=183.4
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++++++.+.++.+ +++++..+.-...++++++++++++.+.+++++ .+++.++++.+++++++|++
T Consensus 318 p~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~------------~~li~~~~ip~s~~~~~~~l 383 (1052)
T 2v50_A 318 PQGMKVVYPYDTT--PVVSASIHEVVKTLGEAILLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFGVL 383 (1052)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 5689998887653 233333333333567888888888888888742 36788899999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh--cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCc-
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~--~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~- 764 (951)
.++|+++|. ++.+...+++|++|||++|++++|+++. .+.+..+|+.+++++.+.|+++|++|+++||+.+.+++.
T Consensus 384 ~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~ 462 (1052)
T 2v50_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGS 462 (1052)
T ss_dssp HHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHH
T ss_pred HHhCCCHHH-HHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999997 5677788899999999999999998763 688999999999999999999999999999999999987
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchhHHHHHHhhh-
Q 002221 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHA- 841 (951)
Q Consensus 765 --p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ya- 841 (951)
+.++.||+..++|+++++++++|++|+++.+..++....+. ..+.. ......+..+.+ +.+.|.
T Consensus 463 ~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~-~~~~y~~ 529 (1052)
T 2v50_A 463 TGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDH-------GEHKG-----GFFGWFNRMFLS-TTHGYER 529 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------------CHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccc-------ccccc-----hhhhHHHHHHHH-HHHHHHH
Confidence 48999999999999999999999999999876543211000 00000 000000011111 112233
Q ss_pred --hhhccccchhhhHHHHHHHHHHHHHhhcccCCCccccc---------cCCCCCchHHH
Q 002221 842 --TILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKI---------VLPRDSYLQGY 890 (951)
Q Consensus 842 --~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~~---------~~P~dSyl~~y 890 (951)
.+.+++ |+.+++++++++++++++..+++.++.|.. .+|+++.+.+.
T Consensus 530 ~l~~~l~~--~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t 587 (1052)
T 2v50_A 530 GVASILKH--RAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERT 587 (1052)
T ss_dssp HHHHHHHH--CSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHH
T ss_pred HHHHHHhh--HHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHHH
Confidence 334554 344566677777888888888888776542 47888755433
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.67 E-value=6.1e-16 Score=197.83 Aligned_cols=260 Identities=12% Similarity=0.084 Sum_probs=185.0
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++++++.+.++.+ +.+++..+.-...++++++++++++.+.++++ ..+++.++++.+++++++|++
T Consensus 323 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~------------~~~li~~~~ip~~~~~~~~~l 388 (1054)
T 3ne5_A 323 PEGVEIVTTYDRS--QLIDRAIDNLSGKLLEEFIVVAVVCALFLWHV------------RSALVAIISLPLGLCIAFIVM 388 (1054)
T ss_dssp CTTEEEEEEEETH--HHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSH------------HHHHHHHTTTHHHHHHHHHHH
T ss_pred CCCeEEEEEecch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5688888766543 12222222233345677778777777766664 236888899999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-c-----------CCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-----------ELPLETRISNALVEVGPSITLASLSEVLA 755 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~-----------~~~~~e~i~~al~~~g~si~~tslT~~~~ 755 (951)
.++|+++|. ++.+...+++|++|||+++++++++++. . +.++.+++.++.++++++++.|++|++++
T Consensus 389 ~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s~ltt~~~ 467 (1054)
T 3ne5_A 389 HFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLS 467 (1054)
T ss_dssp HHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHHHHHHHHT
T ss_pred HHhCCCHHH-HHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 5667778899999999999999998764 3 67899999999999999999999999999
Q ss_pred HHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCCccCCcCCCCCCCcchh
Q 002221 756 FAVGSFIP---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLL 832 (951)
Q Consensus 756 F~~~~~s~---~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l 832 (951)
|+.+.+++ .+.++.||+..++|+++++++++|++|+++.+..++....+. . .....++
T Consensus 468 f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~----------~---------~~~~~~~ 528 (1054)
T 3ne5_A 468 FIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPES----------S---------NPLNRFL 528 (1054)
T ss_dssp TGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC-------------------------------CHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc----------c---------cHHHHHH
Confidence 99999887 678999999999999999999999999999977654321110 0 0011223
Q ss_pred HHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHhhcccCCCcccc---------ccCCCCCchHH---HHHHHHhhcCC
Q 002221 833 ARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQK---------IVLPRDSYLQG---YFNNISEHLRI 900 (951)
Q Consensus 833 ~~~~~~~ya~~l~~~~~r~~vl~~f~~~~~~si~~~~~i~~gld~~---------~~~P~dSyl~~---yf~~~~~~l~~ 900 (951)
.+++++. ..+.+++ |+.+++++++++++++++..++..++-|. ..+|+++.+.+ ..+.+++.+..
T Consensus 529 ~~~y~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~g~~~v~~~~p~Gtsle~t~~~~~~ie~~l~~ 605 (1054)
T 3ne5_A 529 IRVYHPL-LLKVLHW--PKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMS 605 (1054)
T ss_dssp HHHHHHH-HHHHTSS--THHHHHHHHHHHHHTHHHHTTCCBCSSCCCCCSEEEECCBCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCceECCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHhc
Confidence 3333322 3445555 44566677788888888888888776443 34566654433 33445555544
Q ss_pred CCCE
Q 002221 901 GPPL 904 (951)
Q Consensus 901 gpPv 904 (951)
-|.+
T Consensus 606 ~p~V 609 (1054)
T 3ne5_A 606 VPEV 609 (1054)
T ss_dssp STTE
T ss_pred CCCe
Confidence 4444
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.66 E-value=1.6e-15 Score=185.95 Aligned_cols=177 Identities=19% Similarity=0.172 Sum_probs=148.1
Q ss_pred CCCeEEEEccchhHHHHHhhhhchh-hHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTAD-AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d-~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
+.++++.+.. ++..++.+.+..+ ...++++++++++++.+.+| + ..+++.++++.+++++++|+
T Consensus 251 P~~~~~~~~~--~vg~~l~~~~~~~~~~a~~i~~~lv~l~l~l~~r-~------------~~~li~~~~l~~~i~~~~~~ 315 (741)
T 3aqp_A 251 PVPLKVAEIR--AIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG-P------------HLGLVASLGLLYTSALILGL 315 (741)
T ss_dssp CCCCEEEEEE--EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-H------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEee--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h------------HHHHHHHHHHHHHHHHHHHH
Confidence 4456665543 3222333333223 33567888888888888765 2 24788889999999999999
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCch
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p 765 (951)
++++|.++|+ +..+.+.+++|++|||.+|++++|+++. .+.++.+++.+++++++.+++.+++|++++|+.+.+++.+
T Consensus 316 l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~ 394 (741)
T 3aqp_A 316 LSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATG 394 (741)
T ss_dssp HHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999998 5778889999999999999999999885 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 766 ~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
.+|.||+..++|++++++.++++.|+++.+..+|.
T Consensus 395 ~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~ 429 (741)
T 3aqp_A 395 PVRGFAVILAIGVVASVFSNLVFSRHLLERLADRG 429 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999876653
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.54 E-value=1.3e-13 Score=176.56 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=150.9
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~ 687 (951)
++++++.+.|+ .++..+....-...+.++++++++++.+.+++++ .+++.++++.++++.++|.+
T Consensus 852 p~g~~~~~~G~---~~~~~~~~~~~~~~~~~a~~~i~l~L~~~f~s~~------------~~l~~l~~i~~~~~~~~~~l 916 (1057)
T 4dx5_A 852 PTGVGYDWTGM---SYQERLSGNQAPSLYAISLIVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLAA 916 (1057)
T ss_dssp CTTEEEEECHH---HHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTCSS------------THHHHHTTHHHHHHHHHHHH
T ss_pred CCCCEEEecCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 57899999886 2223332233344567888999998888888763 26777889999999999999
Q ss_pred hhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHH-h-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccC--
Q 002221 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-Q-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (951)
Q Consensus 688 ~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~-~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~-- 763 (951)
.++|.+++. .+.+...+++|++|||++|+++++++. . ++.+..+++.++..+.+.++++|++|+++||+.+++++
T Consensus 917 ~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~g~ 995 (1057)
T 4dx5_A 917 TFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGA 995 (1057)
T ss_dssp HHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCST
T ss_pred HHHCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999997 566666788999999999999999987 4 68999999999999999999999999999999999884
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 764 -~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
.+.++.||+..++|++++++++++++|+++.+..++.
T Consensus 996 g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~ 1033 (1057)
T 4dx5_A 996 GSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1057)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999877654
No 8
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.54 E-value=1.2e-13 Score=169.52 Aligned_cols=174 Identities=16% Similarity=0.282 Sum_probs=143.8
Q ss_pred CCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHh
Q 002221 609 KNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS 688 (951)
Q Consensus 609 ~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl~~ 688 (951)
+..++.+.|+ .+.+++.+ .-+..++++++++++|+.+.+ + +..++..++++++++++++|+++
T Consensus 551 ~~~~~~~vG~-~~~~~~~~---~~~~al~lali~i~l~l~~~F-s------------~~~~l~~l~~l~~~~~~~~g~l~ 613 (741)
T 3aqp_A 551 TVLASETVGP-AIGEELRR---NAVMAVLVGLGLILLYVAFRF-D------------WTFGVASILAVAHDVAIVAGMYS 613 (741)
T ss_dssp CCCEEEEECH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHS-C------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777775 34444332 223445677777777776654 4 33578889999999999999999
Q ss_pred hcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh---cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCch
Q 002221 689 AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (951)
Q Consensus 689 ~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~---~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~p 765 (951)
++|++++. .+.+...+++|+++||++|++++|+++. ++.+.++++.+++++.+.+++.|++|++++|+.+.+++.+
T Consensus 614 l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~g~~ 692 (741)
T 3aqp_A 614 LLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS 692 (741)
T ss_dssp HHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHhcCccH-HHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999997 4455555679999999999999999875 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002221 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (951)
Q Consensus 766 ~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr~ 800 (951)
.++.||+..++|++++.+..+++.|+++.+..+|+
T Consensus 693 ~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 693 VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999776554
No 9
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.47 E-value=2e-13 Score=174.72 Aligned_cols=177 Identities=10% Similarity=0.075 Sum_probs=147.2
Q ss_pred CCCCeEEEEccchhHHHHHhhhhchhhHHHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 607 ~~~~l~v~f~~e~sl~~el~~~s~~d~~~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
.++++++.+.|+.....+..+ .-...+.++++++++++.+.++++ ..+++.++++.+++++++|.
T Consensus 857 ~p~g~~~~~~G~~~~~~~~~~---~~~~~~~~al~li~l~L~~~f~S~------------~~~l~il~~ip~~~~g~~~~ 921 (1054)
T 3ne5_A 857 LKPGTSVAFSGQFELLERANH---KLKLMVPMTLMIIFVLLYLAFRRV------------GEALLIISSVPFALVGGIWL 921 (1054)
T ss_dssp CCTTCEEEEEEHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHTCCH------------HHHHHHHTTSHHHHHHHHHH
T ss_pred CCCCcEEEeCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCH------------HHHHHHHHHHHHHHHHHHHH
Confidence 357899999886433322222 222346678888888888887764 34678888999999999999
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHhc------------CCCHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL------------ELPLETRISNALVEVGPSITLASLSEVL 754 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~~------------~~~~~e~i~~al~~~g~si~~tslT~~~ 754 (951)
+.++|.+++. .+.+...+++|++|||++++++++++..+ +.+..+++.++.++.+.++++|++|+++
T Consensus 922 l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltti~ 1000 (1054)
T 3ne5_A 922 LWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIA 1000 (1054)
T ss_dssp HHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCccH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999997 56677778899999999999988877643 6788999999999999999999999999
Q ss_pred HHHhhccc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 755 AFAVGSFI---PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 755 ~F~~~~~s---~~p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
||+.++++ ..+.++.||+..++|+++++++++++.|+++.+..++
T Consensus 1001 g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~ 1048 (1054)
T 3ne5_A 1001 GLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLH 1048 (1054)
T ss_dssp HHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTT
T ss_pred HHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 4788999999999999999999999999999977544
No 10
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.45 E-value=4.2e-13 Score=171.55 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=145.6
Q ss_pred CCCeEEEEccchhHHHHHhhhhchhhH-HHHHHHHHHHHHHHHhhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 002221 608 SKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (951)
Q Consensus 608 ~~~l~v~f~~e~sl~~el~~~s~~d~~-~l~is~llmflyv~~~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~Gl 686 (951)
++++++.+.|+.. +..+. ..++. .+.++++++++++.+.+++++. +++.++++.++++.++|.
T Consensus 851 p~g~~~~~~G~~~---~~~~~-~~~~~~~~~~a~~~i~l~l~~~f~s~~~------------~l~il~~ip~~~~g~~~~ 914 (1052)
T 2v50_A 851 PKGVGYSWTGLSY---EERLS-GSQAPALYALSLLVVFLCLAALYESWSI------------PFSVMLVVPLGVIGALLA 914 (1052)
T ss_dssp CTTEEEEECTHHH---HTTTT-CCCSHHHHHHHHHHHHHHHHHHTTCSST------------THHHHTHHHHHHTTHHHH
T ss_pred CCCcEEEecchHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcchHH------------HHHHHHHHHHHHHHHHHH
Confidence 5789999988642 22222 33443 5678899999999988888632 466677888899999999
Q ss_pred HhhcCcccchhhhhHHHHHhhhhcccceehhHHHHHHHh-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCc-
Q 002221 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (951)
Q Consensus 687 ~~~~G~~~~~i~~~vipfLvLgIGvD~~~~l~~~~~~~~-~~~~~~e~i~~al~~~g~si~~tslT~~~~F~~~~~s~~- 764 (951)
+.++|.+++. .+.+...+++|++|||++|++++|+++. ++.+..+++.++.++.+.++++|++|+++||+.++++..
T Consensus 915 ~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~ 993 (1052)
T 2v50_A 915 TSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGA 993 (1052)
T ss_dssp HHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCST
T ss_pred HHHHCCCccH-HHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999997 5666777889999999999999999875 578999999999999999999999999999999998877
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002221 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (951)
Q Consensus 765 --p~vr~Fgl~aa~av~~~~l~~lt~~palL~l~~rr 799 (951)
+.++.||+..++|++++.++.++++|+++.+..++
T Consensus 994 g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 994 GSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred ChhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999876543
No 11
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.41 E-value=25 Score=22.52 Aligned_cols=10 Identities=60% Similarity=1.540 Sum_probs=5.6
Q ss_pred HhhhccccccC
Q 002221 129 FLNLFCELTCS 139 (951)
Q Consensus 129 f~~~~C~~tCs 139 (951)
+.++||+ |||
T Consensus 3 lvdffce-tcs 12 (26)
T 1loi_A 3 LVDFFCE-TCS 12 (26)
T ss_dssp HHHHHHH-TSS
T ss_pred hHHHHHH-hcC
Confidence 3456665 555
Done!