Query 002222
Match_columns 951
No_of_seqs 429 out of 3348
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htx_A HEN1; HEN1, small RNA m 100.0 1E-280 5E-285 2436.3 62.1 895 3-946 9-943 (950)
2 3jwg_A HEN1, methyltransferase 100.0 2.2E-28 7.4E-33 244.3 21.9 202 693-918 10-211 (219)
3 3jwh_A HEN1; methyltransferase 100.0 1.3E-27 4.4E-32 238.9 22.3 202 693-918 9-211 (217)
4 2p7i_A Hypothetical protein; p 99.7 3.9E-16 1.3E-20 156.0 17.8 169 699-899 28-201 (250)
5 1vl5_A Unknown conserved prote 99.7 2.7E-16 9.1E-21 161.2 15.6 161 699-893 24-185 (260)
6 3ujc_A Phosphoethanolamine N-m 99.7 4E-16 1.4E-20 158.4 13.0 169 690-898 33-207 (266)
7 3hnr_A Probable methyltransfer 99.7 1.7E-15 5.8E-20 150.6 16.6 166 701-898 34-201 (220)
8 3h2b_A SAM-dependent methyltra 99.6 8.1E-16 2.8E-20 151.4 13.8 139 713-897 42-181 (203)
9 3l8d_A Methyltransferase; stru 99.6 3.2E-15 1.1E-19 150.4 17.7 154 702-897 45-200 (242)
10 3dtn_A Putative methyltransfer 99.6 3.1E-15 1.1E-19 150.4 17.6 174 695-893 26-209 (234)
11 4htf_A S-adenosylmethionine-de 99.6 3.7E-15 1.3E-19 155.0 18.6 163 712-898 68-233 (285)
12 1xxl_A YCGJ protein; structura 99.6 2E-15 6.7E-20 153.8 15.8 157 703-893 12-169 (239)
13 3dli_A Methyltransferase; PSI- 99.6 1.6E-15 5.5E-20 153.9 14.5 136 712-893 41-179 (240)
14 4gek_A TRNA (CMO5U34)-methyltr 99.6 3.2E-15 1.1E-19 157.3 16.7 128 694-834 50-181 (261)
15 3ou2_A SAM-dependent methyltra 99.6 3.5E-15 1.2E-19 147.1 15.9 165 701-897 34-204 (218)
16 3e23_A Uncharacterized protein 99.6 3.7E-15 1.3E-19 147.9 15.7 156 712-918 43-202 (211)
17 1nkv_A Hypothetical protein YJ 99.6 1.5E-15 5.2E-20 154.3 13.2 126 692-833 16-142 (256)
18 1xtp_A LMAJ004091AAA; SGPP, st 99.6 3.2E-15 1.1E-19 151.4 15.1 149 704-894 85-234 (254)
19 1y8c_A S-adenosylmethionine-de 99.6 1.2E-14 4.1E-19 145.5 18.9 124 695-835 18-146 (246)
20 1pjz_A Thiopurine S-methyltran 99.6 1.8E-15 6.1E-20 151.8 12.4 122 708-833 18-142 (203)
21 2ex4_A Adrenal gland protein A 99.6 1.9E-14 6.4E-19 146.2 18.3 142 712-894 79-221 (241)
22 3dh0_A SAM dependent methyltra 99.6 9.8E-15 3.3E-19 145.0 15.5 165 702-917 27-193 (219)
23 3dlc_A Putative S-adenosyl-L-m 99.6 5.5E-15 1.9E-19 145.2 13.0 128 692-835 24-152 (219)
24 3bus_A REBM, methyltransferase 99.6 1.7E-14 5.8E-19 148.2 16.8 166 700-899 49-218 (273)
25 3g5l_A Putative S-adenosylmeth 99.6 2.6E-14 8.8E-19 145.6 17.4 115 701-834 33-148 (253)
26 2xvm_A Tellurite resistance pr 99.6 1.5E-14 5.1E-19 140.7 14.6 115 703-833 23-138 (199)
27 2o57_A Putative sarcosine dime 99.6 1.2E-14 4E-19 151.8 14.6 122 698-834 64-190 (297)
28 1kpg_A CFA synthase;, cyclopro 99.6 3.6E-14 1.2E-18 147.4 17.5 121 700-836 52-173 (287)
29 3kkz_A Uncharacterized protein 99.6 9.5E-15 3.2E-19 150.5 12.7 127 691-833 24-152 (267)
30 2gb4_A Thiopurine S-methyltran 99.6 2.2E-14 7.6E-19 150.2 15.2 131 699-833 55-193 (252)
31 3ofk_A Nodulation protein S; N 99.6 2E-14 6.7E-19 142.9 14.1 122 695-834 33-157 (216)
32 3f4k_A Putative methyltransfer 99.6 9.3E-15 3.2E-19 148.6 11.9 125 693-833 26-152 (257)
33 3bkw_A MLL3908 protein, S-aden 99.6 3.2E-14 1.1E-18 142.9 15.3 115 702-835 33-148 (243)
34 3g07_A 7SK snRNA methylphospha 99.6 2.1E-15 7.1E-20 159.5 6.8 186 712-918 46-288 (292)
35 3cc8_A Putative methyltransfer 99.6 4.9E-14 1.7E-18 139.4 16.1 160 703-899 24-187 (230)
36 3lcc_A Putative methyl chlorid 99.6 1.4E-13 4.6E-18 139.1 19.6 143 712-900 66-210 (235)
37 2yqz_A Hypothetical protein TT 99.6 3.6E-14 1.2E-18 144.2 15.3 149 710-894 37-192 (263)
38 3vc1_A Geranyl diphosphate 2-C 99.6 1.4E-14 4.9E-19 153.5 12.8 123 695-834 99-224 (312)
39 2kw5_A SLR1183 protein; struct 99.6 1.2E-13 4.1E-18 135.9 18.3 157 715-916 32-193 (202)
40 3g2m_A PCZA361.24; SAM-depende 99.6 2.5E-14 8.5E-19 150.3 14.3 122 701-836 72-195 (299)
41 3pfg_A N-methyltransferase; N, 99.5 3E-14 1E-18 146.3 13.6 115 696-831 32-151 (263)
42 2gs9_A Hypothetical protein TT 99.5 4.3E-14 1.5E-18 139.9 14.2 132 712-882 36-170 (211)
43 3hem_A Cyclopropane-fatty-acyl 99.5 1.4E-13 4.6E-18 144.9 18.8 120 700-835 60-187 (302)
44 3cgg_A SAM-dependent methyltra 99.5 1.6E-13 5.5E-18 132.0 17.6 103 711-833 45-149 (195)
45 3thr_A Glycine N-methyltransfe 99.5 1.5E-14 5.1E-19 150.4 11.1 128 698-836 43-180 (293)
46 4hg2_A Methyltransferase type 99.5 1.6E-14 5.6E-19 151.9 10.1 116 692-833 21-137 (257)
47 3i9f_A Putative type 11 methyl 99.5 2.9E-14 9.9E-19 136.6 10.8 152 703-918 8-161 (170)
48 2fk8_A Methoxy mycolic acid sy 99.5 1.5E-13 5.1E-18 145.3 17.2 120 700-836 78-199 (318)
49 3bxo_A N,N-dimethyltransferase 99.5 4.3E-14 1.5E-18 141.6 12.3 116 698-834 24-144 (239)
50 2p35_A Trans-aconitate 2-methy 99.5 4.6E-14 1.6E-18 143.4 12.2 156 703-894 24-186 (259)
51 3sm3_A SAM-dependent methyltra 99.5 1.4E-13 4.7E-18 136.9 15.3 167 712-895 30-204 (235)
52 3ccf_A Cyclopropane-fatty-acyl 99.5 5.1E-14 1.7E-18 146.3 12.7 157 703-894 48-206 (279)
53 3bkx_A SAM-dependent methyltra 99.5 2.7E-13 9.3E-18 139.4 17.4 169 700-894 31-215 (275)
54 1ri5_A MRNA capping enzyme; me 99.5 1.8E-13 6E-18 141.5 16.0 112 711-835 63-178 (298)
55 3m70_A Tellurite resistance pr 99.5 1.5E-13 5.2E-18 142.9 15.4 112 704-832 112-224 (286)
56 3d2l_A SAM-dependent methyltra 99.5 4.5E-13 1.5E-17 134.5 18.0 119 697-835 20-141 (243)
57 3e8s_A Putative SAM dependent 99.5 1.4E-13 4.7E-18 135.9 13.4 158 702-896 42-207 (227)
58 2aot_A HMT, histamine N-methyl 99.5 2.8E-13 9.6E-18 142.3 16.2 149 712-894 52-217 (292)
59 3mgg_A Methyltransferase; NYSG 99.5 1.8E-13 6.2E-18 141.1 12.5 109 711-834 36-145 (276)
60 2p8j_A S-adenosylmethionine-de 99.5 2.4E-13 8.3E-18 133.7 12.7 108 711-834 22-131 (209)
61 1vlm_A SAM-dependent methyltra 99.5 8.6E-13 3E-17 132.4 16.9 147 696-893 34-183 (219)
62 4e2x_A TCAB9; kijanose, tetron 99.5 5.9E-14 2E-18 154.5 9.0 150 704-894 99-249 (416)
63 3ocj_A Putative exported prote 99.5 7.2E-13 2.5E-17 140.0 17.0 112 711-834 117-230 (305)
64 3ggd_A SAM-dependent methyltra 99.4 2.8E-13 9.6E-18 137.3 11.7 160 711-899 55-220 (245)
65 1ve3_A Hypothetical protein PH 99.4 8.6E-13 2.9E-17 131.1 14.1 107 712-834 38-145 (227)
66 3gu3_A Methyltransferase; alph 99.4 1E-12 3.5E-17 137.5 15.3 118 700-833 9-128 (284)
67 3ege_A Putative methyltransfer 99.4 2.9E-13 9.9E-18 139.8 10.3 112 699-834 21-133 (261)
68 3g5t_A Trans-aconitate 3-methy 99.4 6.3E-13 2.2E-17 139.6 13.0 118 698-829 23-147 (299)
69 1wzn_A SAM-dependent methyltra 99.4 1.2E-12 4.1E-17 133.0 14.5 118 700-834 26-148 (252)
70 2i62_A Nicotinamide N-methyltr 99.4 2.1E-12 7.1E-17 131.3 15.7 158 711-896 55-237 (265)
71 1p91_A Ribosomal RNA large sub 99.4 8.8E-13 3E-17 135.8 12.8 152 649-836 18-183 (269)
72 2pxx_A Uncharacterized protein 99.4 8.1E-13 2.8E-17 129.7 11.8 108 711-834 41-162 (215)
73 4fsd_A Arsenic methyltransfera 99.4 5.4E-13 1.8E-17 146.6 11.7 119 710-834 81-206 (383)
74 1dus_A MJ0882; hypothetical pr 99.4 1.8E-12 6.1E-17 124.6 13.9 128 692-836 32-162 (194)
75 2r3s_A Uncharacterized protein 99.4 2.3E-12 7.8E-17 136.7 14.9 160 702-893 153-318 (335)
76 4azs_A Methyltransferase WBDD; 99.4 3.6E-13 1.2E-17 155.8 9.4 110 712-836 66-179 (569)
77 3iv6_A Putative Zn-dependent a 99.4 2.2E-12 7.4E-17 137.0 14.5 122 699-837 32-154 (261)
78 2vdw_A Vaccinia virus capping 99.4 1.3E-12 4.3E-17 140.3 12.8 117 712-836 48-174 (302)
79 2avn_A Ubiquinone/menaquinone 99.4 1.2E-12 4E-17 134.9 12.1 101 712-834 54-155 (260)
80 3lbf_A Protein-L-isoaspartate 99.4 1.4E-12 4.8E-17 129.2 12.2 111 700-833 65-176 (210)
81 3p9n_A Possible methyltransfer 99.4 2.3E-12 7.8E-17 126.5 13.5 119 701-834 30-156 (189)
82 3bgv_A MRNA CAP guanine-N7 met 99.4 2.1E-12 7E-17 136.8 12.6 117 712-835 34-159 (313)
83 3hm2_A Precorrin-6Y C5,15-meth 99.4 6.2E-12 2.1E-16 120.4 14.7 115 700-834 13-130 (178)
84 2a14_A Indolethylamine N-methy 99.4 1.5E-12 5.1E-17 135.3 11.1 161 710-898 53-239 (263)
85 3mcz_A O-methyltransferase; ad 99.4 6.6E-12 2.3E-16 134.8 16.3 162 703-895 169-336 (352)
86 2g72_A Phenylethanolamine N-me 99.4 2.7E-12 9.3E-17 134.2 12.7 128 701-830 58-214 (289)
87 3dp7_A SAM-dependent methyltra 99.4 1.1E-11 3.8E-16 135.0 17.9 109 711-833 178-289 (363)
88 3mq2_A 16S rRNA methyltransfer 99.4 2.8E-12 9.7E-17 128.0 11.7 157 706-897 21-183 (218)
89 3mti_A RRNA methylase; SAM-dep 99.3 4.6E-12 1.6E-16 123.1 12.4 104 712-831 22-135 (185)
90 2qe6_A Uncharacterized protein 99.3 1.2E-11 4E-16 130.8 15.2 110 711-835 76-200 (274)
91 1qzz_A RDMB, aclacinomycin-10- 99.3 9.3E-12 3.2E-16 134.5 14.8 115 703-832 173-288 (374)
92 3e05_A Precorrin-6Y C5,15-meth 99.3 1.2E-11 4.2E-16 122.4 14.3 114 702-833 30-144 (204)
93 1vbf_A 231AA long hypothetical 99.3 9E-12 3.1E-16 125.2 13.2 111 700-835 58-169 (231)
94 3i53_A O-methyltransferase; CO 99.3 7.9E-12 2.7E-16 133.6 13.3 107 712-833 169-276 (332)
95 1zx0_A Guanidinoacetate N-meth 99.3 5.8E-12 2E-16 128.0 11.4 106 711-831 59-170 (236)
96 1x19_A CRTF-related protein; m 99.3 3.4E-11 1.2E-15 130.3 17.6 115 703-832 181-296 (359)
97 2yxe_A Protein-L-isoaspartate 99.3 9.3E-12 3.2E-16 123.8 12.1 115 701-835 66-181 (215)
98 1l3i_A Precorrin-6Y methyltran 99.3 8.8E-12 3E-16 119.6 11.4 120 695-833 16-136 (192)
99 3gwz_A MMCR; methyltransferase 99.3 4.7E-11 1.6E-15 130.4 18.3 115 703-832 193-308 (369)
100 3njr_A Precorrin-6Y methylase; 99.3 2.6E-11 8.8E-16 122.1 14.9 110 702-833 45-156 (204)
101 2yxd_A Probable cobalt-precorr 99.3 2E-11 6.9E-16 116.5 12.4 115 695-833 18-133 (183)
102 1tw3_A COMT, carminomycin 4-O- 99.3 2E-11 6.8E-16 131.5 13.8 116 703-833 174-290 (360)
103 3ntv_A MW1564 protein; rossman 99.3 2.9E-11 9.9E-16 123.4 13.4 120 693-829 52-174 (232)
104 2ip2_A Probable phenazine-spec 99.3 2.9E-11 9.9E-16 128.9 13.9 115 702-832 158-273 (334)
105 3fzg_A 16S rRNA methylase; met 99.3 6.6E-12 2.3E-16 128.9 8.6 119 695-833 34-153 (200)
106 1yzh_A TRNA (guanine-N(7)-)-me 99.3 2.7E-11 9.2E-16 121.3 12.6 113 711-836 40-161 (214)
107 2fca_A TRNA (guanine-N(7)-)-me 99.3 1.9E-11 6.5E-16 123.6 11.5 113 711-836 37-158 (213)
108 3evz_A Methyltransferase; NYSG 99.3 1.1E-10 3.7E-15 117.3 16.8 147 711-917 54-220 (230)
109 4dzr_A Protein-(glutamine-N5) 99.3 4E-12 1.4E-16 124.5 6.0 126 695-835 12-169 (215)
110 1dl5_A Protein-L-isoaspartate 99.2 2.2E-11 7.5E-16 130.4 12.2 116 698-833 61-177 (317)
111 3dxy_A TRNA (guanine-N(7)-)-me 99.2 9.7E-12 3.3E-16 127.1 8.9 115 712-839 34-158 (218)
112 2esr_A Methyltransferase; stru 99.2 2.4E-11 8.3E-16 117.3 10.8 122 698-835 16-142 (177)
113 2ift_A Putative methylase HI07 99.2 1.6E-11 5.6E-16 122.9 9.9 118 701-835 41-167 (201)
114 3orh_A Guanidinoacetate N-meth 99.2 2.7E-11 9.1E-16 124.6 11.0 102 711-829 59-168 (236)
115 3ckk_A TRNA (guanine-N(7)-)-me 99.2 4.1E-11 1.4E-15 124.0 11.9 122 711-839 45-176 (235)
116 3q7e_A Protein arginine N-meth 99.2 4.9E-11 1.7E-15 129.9 12.7 107 709-829 63-170 (349)
117 1jg1_A PIMT;, protein-L-isoasp 99.2 4.4E-11 1.5E-15 121.6 11.5 113 701-836 80-194 (235)
118 3eey_A Putative rRNA methylase 99.2 6.2E-11 2.1E-15 116.3 12.1 112 710-832 20-140 (197)
119 1ws6_A Methyltransferase; stru 99.2 1.6E-11 5.4E-16 116.6 7.6 116 700-835 27-151 (171)
120 3grz_A L11 mtase, ribosomal pr 99.2 3.3E-11 1.1E-15 119.2 10.2 102 711-833 59-161 (205)
121 2y1w_A Histone-arginine methyl 99.2 6E-11 2.1E-15 129.1 12.5 115 702-831 40-155 (348)
122 2fhp_A Methylase, putative; al 99.2 4.6E-11 1.6E-15 115.2 10.0 123 697-835 28-158 (187)
123 2pbf_A Protein-L-isoaspartate 99.2 6.6E-11 2.3E-15 118.8 11.1 116 703-833 69-195 (227)
124 3tr6_A O-methyltransferase; ce 99.2 1.3E-10 4.6E-15 116.2 13.2 119 698-832 50-175 (225)
125 3dmg_A Probable ribosomal RNA 99.2 1.7E-10 5.8E-15 128.0 15.2 116 711-842 232-352 (381)
126 3duw_A OMT, O-methyltransferas 99.2 2.7E-10 9.4E-15 114.0 15.2 119 698-832 44-168 (223)
127 3fpf_A Mtnas, putative unchara 99.2 1.3E-10 4.6E-15 125.8 13.8 106 706-832 116-223 (298)
128 3u81_A Catechol O-methyltransf 99.2 1.2E-10 4.1E-15 117.4 12.5 122 695-830 41-169 (221)
129 2hnk_A SAM-dependent O-methylt 99.2 1.2E-10 4.2E-15 118.7 12.7 161 697-899 45-223 (239)
130 1i1n_A Protein-L-isoaspartate 99.2 1.1E-10 3.7E-15 117.2 12.1 117 703-834 66-185 (226)
131 2fpo_A Methylase YHHF; structu 99.2 6E-11 2.1E-15 118.8 10.1 119 698-833 39-162 (202)
132 3lst_A CALO1 methyltransferase 99.2 8.8E-11 3E-15 126.9 11.9 112 703-832 175-287 (348)
133 2fyt_A Protein arginine N-meth 99.2 2.1E-10 7.1E-15 124.7 14.8 112 702-829 54-168 (340)
134 3dr5_A Putative O-methyltransf 99.2 1.2E-10 4.1E-15 119.3 12.2 120 694-829 35-160 (221)
135 3r0q_C Probable protein argini 99.2 1.2E-10 4.2E-15 128.1 12.8 112 702-828 53-165 (376)
136 3tfw_A Putative O-methyltransf 99.2 1.1E-09 3.8E-14 113.1 18.9 116 701-832 52-171 (248)
137 2b3t_A Protein methyltransfera 99.1 2.8E-10 9.6E-15 118.8 14.0 125 695-834 93-241 (276)
138 1xdz_A Methyltransferase GIDB; 99.1 8.1E-11 2.8E-15 120.3 9.7 99 712-829 70-172 (240)
139 4dcm_A Ribosomal RNA large sub 99.1 1.9E-10 6.4E-15 127.3 13.3 131 701-842 211-346 (375)
140 3lpm_A Putative methyltransfer 99.1 2.8E-10 9.5E-15 117.8 13.7 119 704-835 40-180 (259)
141 3uwp_A Histone-lysine N-methyl 99.1 1.5E-10 5E-15 130.7 12.5 129 693-831 154-287 (438)
142 3tma_A Methyltransferase; thum 99.1 1.5E-10 5.1E-15 125.6 11.9 132 691-835 182-321 (354)
143 2pwy_A TRNA (adenine-N(1)-)-me 99.1 1.2E-10 4.1E-15 118.4 10.5 122 695-834 79-201 (258)
144 1nt2_A Fibrillarin-like PRE-rR 99.1 1.6E-10 5.6E-15 117.2 11.4 103 710-832 55-162 (210)
145 1yb2_A Hypothetical protein TA 99.1 1.1E-10 3.6E-15 122.1 10.3 119 696-834 94-214 (275)
146 1jsx_A Glucose-inhibited divis 99.1 1.7E-10 5.8E-15 113.8 11.2 99 712-830 65-164 (207)
147 1g6q_1 HnRNP arginine N-methyl 99.1 2.3E-10 7.9E-15 123.5 13.0 114 702-829 28-142 (328)
148 3reo_A (ISO)eugenol O-methyltr 99.1 1.9E-10 6.7E-15 125.8 12.6 100 710-832 201-301 (368)
149 2pjd_A Ribosomal RNA small sub 99.1 5.4E-11 1.8E-15 128.9 7.7 126 692-833 176-305 (343)
150 1o9g_A RRNA methyltransferase; 99.1 1.5E-10 5.1E-15 118.8 10.5 133 700-834 39-216 (250)
151 1fp1_D Isoliquiritigenin 2'-O- 99.1 2.2E-10 7.6E-15 124.8 12.5 106 703-831 199-306 (372)
152 1i9g_A Hypothetical protein RV 99.1 1.4E-10 4.7E-15 120.1 10.1 125 695-835 82-207 (280)
153 3mb5_A SAM-dependent methyltra 99.1 1.7E-10 5.9E-15 117.8 10.8 121 695-835 76-198 (255)
154 1af7_A Chemotaxis receptor met 99.1 1.1E-10 3.8E-15 124.5 9.3 121 712-832 105-252 (274)
155 1ne2_A Hypothetical protein TA 99.1 4.2E-10 1.4E-14 111.1 12.7 92 709-822 48-139 (200)
156 2igt_A SAM dependent methyltra 99.1 7.1E-10 2.4E-14 120.8 15.3 141 703-894 143-300 (332)
157 3p9c_A Caffeic acid O-methyltr 99.1 5.1E-10 1.8E-14 122.4 14.2 106 704-832 192-299 (364)
158 2ozv_A Hypothetical protein AT 99.1 2.5E-10 8.6E-15 119.1 11.2 128 704-840 28-179 (260)
159 3c3p_A Methyltransferase; NP_9 99.1 2.8E-10 9.7E-15 113.4 11.0 121 694-831 38-160 (210)
160 3p2e_A 16S rRNA methylase; met 99.1 7.7E-11 2.7E-15 121.0 7.1 108 711-834 23-143 (225)
161 3gdh_A Trimethylguanosine synt 99.1 5E-11 1.7E-15 120.8 5.5 101 711-829 77-179 (241)
162 3m33_A Uncharacterized protein 99.1 4.9E-11 1.7E-15 120.6 5.1 91 711-829 47-139 (226)
163 1fp2_A Isoflavone O-methyltran 99.1 6.1E-10 2.1E-14 120.3 13.7 100 711-833 187-290 (352)
164 2gpy_A O-methyltransferase; st 99.1 3.3E-10 1.1E-14 114.7 10.6 120 696-832 38-161 (233)
165 3q87_B N6 adenine specific DNA 99.1 3.1E-10 1.1E-14 110.8 10.1 103 704-833 13-125 (170)
166 2ipx_A RRNA 2'-O-methyltransfe 99.1 3.2E-10 1.1E-14 114.9 10.4 105 710-832 75-183 (233)
167 3r3h_A O-methyltransferase, SA 99.1 1.6E-10 5.5E-15 119.7 8.4 117 698-830 46-169 (242)
168 3giw_A Protein of unknown func 99.1 4.2E-10 1.5E-14 120.8 11.7 120 705-836 70-205 (277)
169 4a6d_A Hydroxyindole O-methylt 99.1 1.5E-09 5.1E-14 118.3 16.1 113 704-832 171-284 (353)
170 1r18_A Protein-L-isoaspartate( 99.1 3.2E-10 1.1E-14 114.5 10.1 116 703-833 73-196 (227)
171 1fbn_A MJ fibrillarin homologu 99.1 4.6E-10 1.6E-14 114.0 11.3 102 708-830 70-177 (230)
172 3b3j_A Histone-arginine methyl 99.1 4.8E-10 1.6E-14 128.0 12.6 112 702-828 148-260 (480)
173 1ej0_A FTSJ; methyltransferase 99.1 3.3E-10 1.1E-14 106.4 9.2 103 710-835 20-140 (180)
174 2avd_A Catechol-O-methyltransf 99.1 1.2E-09 4E-14 109.7 13.3 114 701-830 58-178 (229)
175 2vdv_E TRNA (guanine-N(7)-)-me 99.1 3.5E-10 1.2E-14 116.2 9.7 124 712-840 49-182 (246)
176 1g8a_A Fibrillarin-like PRE-rR 99.0 6.8E-10 2.3E-14 111.7 11.1 104 710-831 71-178 (227)
177 3g89_A Ribosomal RNA small sub 99.0 4.1E-10 1.4E-14 117.4 9.5 100 711-829 79-182 (249)
178 1ixk_A Methyltransferase; open 99.0 5.5E-10 1.9E-14 120.2 10.6 119 703-833 109-248 (315)
179 2yvl_A TRMI protein, hypotheti 99.0 1.3E-09 4.5E-14 110.1 12.8 117 698-835 77-194 (248)
180 1wy7_A Hypothetical protein PH 99.0 3.9E-09 1.3E-13 104.3 15.6 102 709-830 46-148 (207)
181 3bwc_A Spermidine synthase; SA 99.0 1E-09 3.4E-14 117.7 12.0 113 711-832 94-211 (304)
182 3bzb_A Uncharacterized protein 99.0 2.1E-09 7.3E-14 113.3 13.9 122 697-829 64-203 (281)
183 3cbg_A O-methyltransferase; cy 99.0 3.2E-09 1.1E-13 108.5 14.2 114 702-831 62-182 (232)
184 1nv8_A HEMK protein; class I a 99.0 2.9E-09 1E-13 113.1 14.3 125 695-835 106-253 (284)
185 2nxc_A L11 mtase, ribosomal pr 99.0 8.3E-10 2.9E-14 114.8 9.9 100 711-832 119-219 (254)
186 2b25_A Hypothetical protein; s 99.0 8.9E-10 3E-14 118.3 10.0 126 697-835 90-223 (336)
187 1zg3_A Isoflavanone 4'-O-methy 99.0 1.3E-09 4.3E-14 118.1 11.3 99 711-832 192-294 (358)
188 1sui_A Caffeoyl-COA O-methyltr 99.0 1.1E-09 3.9E-14 113.7 10.4 116 699-830 66-189 (247)
189 3lec_A NADB-rossmann superfami 99.0 2.4E-09 8.3E-14 112.1 12.7 119 699-835 10-128 (230)
190 2frn_A Hypothetical protein PH 99.0 1.5E-09 5E-14 114.5 11.0 121 690-833 106-227 (278)
191 1o54_A SAM-dependent O-methylt 99.0 1.6E-09 5.6E-14 112.9 11.3 120 695-833 95-215 (277)
192 3frh_A 16S rRNA methylase; met 99.0 1.9E-09 6.6E-14 114.2 11.5 104 711-833 104-207 (253)
193 3gnl_A Uncharacterized protein 99.0 4.2E-09 1.4E-13 111.2 14.0 119 699-835 10-128 (244)
194 3hp7_A Hemolysin, putative; st 99.0 1E-09 3.6E-14 118.4 9.6 105 701-829 73-183 (291)
195 1u2z_A Histone-lysine N-methyl 99.0 1.8E-09 6.2E-14 122.2 11.6 117 698-830 228-358 (433)
196 3tm4_A TRNA (guanine N2-)-meth 99.0 2E-09 6.7E-14 118.5 11.4 124 695-833 201-331 (373)
197 3id6_C Fibrillarin-like rRNA/T 98.9 3E-09 1E-13 111.2 12.0 120 695-832 56-182 (232)
198 3opn_A Putative hemolysin; str 98.9 2.8E-09 9.5E-14 110.5 11.7 174 700-918 24-203 (232)
199 4hc4_A Protein arginine N-meth 98.9 2.2E-09 7.4E-14 119.5 11.4 105 710-829 81-186 (376)
200 2ld4_A Anamorsin; methyltransf 98.9 9.4E-10 3.2E-14 106.5 7.5 89 710-832 10-102 (176)
201 2h00_A Methyltransferase 10 do 98.9 1.1E-09 3.8E-14 112.2 7.8 106 712-829 65-190 (254)
202 3kr9_A SAM-dependent methyltra 98.9 7.9E-09 2.7E-13 107.8 14.1 120 699-836 4-123 (225)
203 4df3_A Fibrillarin-like rRNA/T 98.9 1.5E-09 5.2E-14 113.7 8.8 106 709-832 74-183 (233)
204 3lcv_B Sisomicin-gentamicin re 98.9 1.9E-09 6.6E-14 115.4 9.5 120 697-834 119-238 (281)
205 3ajd_A Putative methyltransfer 98.9 1.7E-09 5.8E-14 113.7 8.2 118 703-833 74-213 (274)
206 2zfu_A Nucleomethylin, cerebra 98.9 1.6E-09 5.3E-14 107.8 7.4 133 704-918 58-192 (215)
207 3sso_A Methyltransferase; macr 98.9 1.2E-09 4E-14 123.1 7.1 126 685-835 189-328 (419)
208 3c3y_A Pfomt, O-methyltransfer 98.9 3.2E-09 1.1E-13 109.2 9.7 114 701-830 59-180 (237)
209 3adn_A Spermidine synthase; am 98.9 6.2E-09 2.1E-13 111.7 12.4 113 711-831 82-198 (294)
210 2plw_A Ribosomal RNA methyltra 98.9 8.3E-09 2.9E-13 101.2 11.7 101 711-834 21-157 (201)
211 3a27_A TYW2, uncharacterized p 98.9 4E-09 1.4E-13 111.0 9.7 102 711-832 118-220 (272)
212 2i7c_A Spermidine synthase; tr 98.9 7.5E-09 2.6E-13 109.8 11.6 113 711-832 77-193 (283)
213 2o07_A Spermidine synthase; st 98.9 8.3E-09 2.8E-13 111.1 11.8 111 711-831 94-209 (304)
214 2bm8_A Cephalosporin hydroxyla 98.9 2.1E-09 7.1E-14 111.0 6.8 106 704-831 73-187 (236)
215 2b78_A Hypothetical protein SM 98.9 1.9E-08 6.4E-13 111.4 14.5 108 711-832 211-332 (385)
216 1zq9_A Probable dimethyladenos 98.8 1.6E-08 5.5E-13 107.4 13.3 86 700-801 16-101 (285)
217 3c0k_A UPF0064 protein YCCW; P 98.8 4.3E-08 1.5E-12 108.3 16.9 106 711-831 219-339 (396)
218 1uir_A Polyamine aminopropyltr 98.8 1.2E-08 4E-13 110.0 11.9 113 711-831 76-195 (314)
219 1xj5_A Spermidine synthase 1; 98.8 1.6E-08 5.6E-13 110.5 13.1 111 711-830 119-234 (334)
220 2h1r_A Dimethyladenosine trans 98.8 1.7E-08 6E-13 107.9 12.8 87 700-803 30-116 (299)
221 1iy9_A Spermidine synthase; ro 98.8 7.5E-09 2.6E-13 109.5 9.7 112 711-831 74-189 (275)
222 3gjy_A Spermidine synthase; AP 98.8 1.2E-08 4.1E-13 111.4 11.0 107 713-832 90-201 (317)
223 2yxl_A PH0851 protein, 450AA l 98.8 1.7E-08 5.8E-13 113.8 12.5 119 703-833 250-391 (450)
224 2pt6_A Spermidine synthase; tr 98.8 1.3E-08 4.3E-13 110.4 10.8 112 711-832 115-231 (321)
225 2f8l_A Hypothetical protein LM 98.8 1.3E-08 4.4E-13 110.1 10.4 119 702-834 119-259 (344)
226 1inl_A Spermidine synthase; be 98.8 2.6E-08 8.8E-13 106.5 12.4 112 711-832 89-206 (296)
227 1uwv_A 23S rRNA (uracil-5-)-me 98.8 3.4E-08 1.2E-12 110.8 14.0 90 696-800 270-363 (433)
228 2as0_A Hypothetical protein PH 98.8 4.4E-08 1.5E-12 108.1 14.0 107 712-833 217-337 (396)
229 2frx_A Hypothetical protein YE 98.8 1.7E-08 5.7E-13 115.4 10.8 119 703-833 106-248 (479)
230 2b2c_A Spermidine synthase; be 98.8 2.2E-08 7.4E-13 108.5 10.8 111 711-831 107-222 (314)
231 1mjf_A Spermidine synthase; sp 98.8 2.2E-08 7.4E-13 106.1 10.6 116 711-831 74-193 (281)
232 1wxx_A TT1595, hypothetical pr 98.7 5.4E-08 1.8E-12 107.2 13.2 106 712-833 209-327 (382)
233 2wa2_A Non-structural protein 98.7 9.9E-09 3.4E-13 109.3 6.5 115 701-833 71-195 (276)
234 2qm3_A Predicted methyltransfe 98.7 7.2E-08 2.5E-12 105.8 13.4 106 711-833 171-280 (373)
235 2nyu_A Putative ribosomal RNA 98.7 5.2E-08 1.8E-12 95.0 10.7 101 711-834 21-148 (196)
236 3gru_A Dimethyladenosine trans 98.7 3.1E-08 1.1E-12 106.9 9.8 86 700-802 38-123 (295)
237 2oxt_A Nucleoside-2'-O-methylt 98.7 1.3E-08 4.4E-13 107.8 6.6 119 697-833 59-187 (265)
238 3m6w_A RRNA methylase; rRNA me 98.7 2.2E-08 7.6E-13 114.3 8.3 118 703-833 92-231 (464)
239 1sqg_A SUN protein, FMU protei 98.7 4.9E-08 1.7E-12 109.2 10.5 117 703-833 237-376 (429)
240 3k0b_A Predicted N6-adenine-sp 98.7 7.4E-08 2.5E-12 107.5 11.6 142 687-840 176-359 (393)
241 2yx1_A Hypothetical protein MJ 98.7 1.3E-07 4.3E-12 102.8 12.9 117 690-834 176-294 (336)
242 3ldg_A Putative uncharacterize 98.6 1.5E-07 5E-12 104.9 13.1 136 693-840 175-352 (384)
243 2jjq_A Uncharacterized RNA met 98.6 2.2E-07 7.6E-12 104.6 14.7 106 700-831 281-387 (425)
244 1qam_A ERMC' methyltransferase 98.6 1.4E-07 4.6E-12 98.0 11.9 82 700-799 18-100 (244)
245 2cmg_A Spermidine synthase; tr 98.6 6.9E-08 2.3E-12 102.0 9.2 99 711-830 71-170 (262)
246 3tqs_A Ribosomal RNA small sub 98.6 1.4E-07 4.9E-12 99.5 11.2 79 700-795 17-99 (255)
247 3m4x_A NOL1/NOP2/SUN family pr 98.6 5.3E-08 1.8E-12 110.9 8.1 119 703-833 96-236 (456)
248 3ldu_A Putative methylase; str 98.6 1.4E-07 4.6E-12 104.9 11.1 136 693-840 176-353 (385)
249 2p41_A Type II methyltransfera 98.6 4.7E-08 1.6E-12 105.4 7.2 104 711-834 81-194 (305)
250 3dou_A Ribosomal RNA large sub 98.6 2.4E-07 8.3E-12 92.8 11.9 97 711-833 24-141 (191)
251 3v97_A Ribosomal RNA large sub 98.6 1.2E-07 4.1E-12 113.0 11.1 106 712-833 539-659 (703)
252 2ih2_A Modification methylase 98.6 7.2E-08 2.5E-12 105.6 8.5 112 701-834 28-167 (421)
253 4dmg_A Putative uncharacterize 98.6 3.4E-07 1.2E-11 102.2 13.8 105 712-833 214-328 (393)
254 3bt7_A TRNA (uracil-5-)-methyl 98.5 7.5E-08 2.6E-12 105.7 7.2 112 698-833 200-328 (369)
255 3fut_A Dimethyladenosine trans 98.5 2E-07 6.9E-12 99.4 9.4 94 700-813 35-129 (271)
256 3k6r_A Putative transferase PH 98.5 2.5E-07 8.4E-12 99.2 10.1 117 688-827 104-220 (278)
257 2r6z_A UPF0341 protein in RSP 98.5 1.4E-07 4.8E-12 99.5 6.3 89 702-805 73-173 (258)
258 2b9e_A NOL1/NOP2/SUN domain fa 98.4 8.6E-07 2.9E-11 96.0 11.5 85 703-799 93-180 (309)
259 3ftd_A Dimethyladenosine trans 98.4 9.2E-07 3.2E-11 92.7 10.9 90 700-807 19-108 (249)
260 2okc_A Type I restriction enzy 98.4 2E-07 6.7E-12 104.8 6.1 120 701-833 160-309 (445)
261 1yub_A Ermam, rRNA methyltrans 98.4 3.6E-08 1.2E-12 101.7 -0.1 81 702-800 19-100 (245)
262 1m6y_A S-adenosyl-methyltransf 98.3 4.7E-07 1.6E-11 97.9 7.1 84 703-800 17-105 (301)
263 3uzu_A Ribosomal RNA small sub 98.3 1.4E-06 4.9E-11 93.1 9.3 74 701-790 31-105 (279)
264 2dul_A N(2),N(2)-dimethylguano 98.3 1E-06 3.6E-11 97.9 8.3 132 689-830 24-163 (378)
265 2xyq_A Putative 2'-O-methyl tr 98.2 2E-06 6.9E-11 92.7 9.3 97 710-834 61-174 (290)
266 3v97_A Ribosomal RNA large sub 98.2 3.9E-06 1.3E-10 100.1 11.1 136 692-838 170-354 (703)
267 1qyr_A KSGA, high level kasuga 98.1 2.2E-06 7.6E-11 90.2 6.9 87 701-807 10-103 (252)
268 2qfm_A Spermine synthase; sper 98.1 7E-06 2.4E-10 91.3 9.2 109 712-829 188-311 (364)
269 3ll7_A Putative methyltransfer 98.1 2.7E-06 9.4E-11 95.8 6.1 75 712-799 93-169 (410)
270 2ar0_A M.ecoki, type I restric 98.0 1.1E-05 3.7E-10 93.6 8.8 120 702-833 159-314 (541)
271 3axs_A Probable N(2),N(2)-dime 97.9 2E-05 6.9E-10 88.3 9.9 104 711-832 51-158 (392)
272 2oyr_A UPF0341 protein YHIQ; a 97.8 2.4E-05 8.3E-10 83.0 8.0 96 702-805 76-176 (258)
273 3lkd_A Type I restriction-modi 97.8 0.00015 5E-09 84.4 13.3 122 702-834 207-361 (542)
274 3ua3_A Protein arginine N-meth 97.7 2.6E-05 8.8E-10 93.1 6.6 105 713-829 410-531 (745)
275 3o4f_A Spermidine synthase; am 97.7 0.00019 6.4E-09 77.9 12.5 109 710-829 81-195 (294)
276 4gqb_A Protein arginine N-meth 97.7 4.2E-05 1.4E-09 90.5 8.0 105 712-829 357-464 (637)
277 3s1s_A Restriction endonucleas 97.6 0.00043 1.5E-08 83.9 14.0 117 712-834 321-468 (878)
278 3cvo_A Methyltransferase-like 97.6 0.00091 3.1E-08 68.9 14.3 97 712-830 30-152 (202)
279 3khk_A Type I restriction-modi 97.5 0.0001 3.5E-09 85.7 7.6 120 702-834 235-398 (544)
280 3evf_A RNA-directed RNA polyme 97.5 0.00012 4.2E-09 78.7 6.7 126 693-833 55-186 (277)
281 1wg8_A Predicted S-adenosylmet 97.4 0.00019 6.6E-09 77.5 7.7 78 703-799 13-95 (285)
282 2b7v_A Double-stranded RNA-spe 97.4 0.0004 1.4E-08 59.8 7.6 66 14-93 2-67 (71)
283 3p1x_A Interleukin enhancer-bi 97.3 0.0005 1.7E-08 60.2 7.8 69 13-95 4-72 (75)
284 2qy6_A UPF0209 protein YFCK; s 97.3 0.00038 1.3E-08 73.6 7.7 119 711-830 59-211 (257)
285 1x49_A Interferon-induced, dou 97.2 0.00065 2.2E-08 62.4 7.7 78 7-96 5-85 (97)
286 4auk_A Ribosomal RNA large sub 97.2 0.00066 2.3E-08 75.9 9.2 71 711-803 210-280 (375)
287 3gcz_A Polyprotein; flavivirus 97.1 0.00032 1.1E-08 75.7 4.7 119 700-833 78-203 (282)
288 3llh_A RISC-loading complex su 97.1 0.001 3.5E-08 60.1 7.0 70 12-94 10-82 (90)
289 1ekz_A DSRBDIII, maternal effe 97.1 0.00083 2.8E-08 58.6 6.1 69 12-93 3-74 (76)
290 2l33_A Interleukin enhancer-bi 97.0 0.0022 7.5E-08 58.5 8.7 68 13-94 14-81 (91)
291 3b5i_A S-adenosyl-L-methionine 97.0 0.0017 5.6E-08 72.6 9.4 122 713-834 53-228 (374)
292 2dix_A Interferon-inducible do 96.9 0.0023 7.7E-08 57.2 7.6 66 15-93 7-75 (84)
293 1uhz_A Staufen (RNA binding pr 96.9 0.0029 9.8E-08 57.3 8.2 67 15-94 5-75 (89)
294 3c6k_A Spermine synthase; sper 96.9 0.0019 6.4E-08 72.4 8.5 114 711-830 204-329 (381)
295 1di2_A XLRBPA, double stranded 96.8 0.0015 5.1E-08 55.9 5.7 63 18-93 2-68 (69)
296 2efj_A 3,7-dimethylxanthine me 96.8 0.0033 1.1E-07 70.5 9.9 108 713-834 53-228 (384)
297 2zig_A TTHA0409, putative modi 96.8 0.0016 5.4E-08 69.4 6.9 55 701-759 225-279 (297)
298 3adj_A F21M12.9 protein; HYL1, 96.8 0.002 6.9E-08 56.3 6.2 66 17-94 5-74 (76)
299 1m6e_X S-adenosyl-L-methionnin 96.8 0.0025 8.4E-08 70.9 8.3 113 713-833 52-211 (359)
300 2cpn_A TAR RNA-binding protein 96.7 0.0052 1.8E-07 55.6 8.7 66 15-93 15-84 (89)
301 2k4m_A TR8_protein, UPF0146 pr 96.7 0.0027 9.2E-08 63.0 7.4 71 700-802 25-98 (153)
302 1s29_A LA protein; winged heli 96.7 0.0011 3.8E-08 60.6 4.2 88 101-208 5-92 (92)
303 3adl_A RISC-loading complex su 96.7 0.0028 9.6E-08 57.3 6.5 69 13-94 12-84 (88)
304 2ljh_A Double-stranded RNA-spe 96.7 0.0043 1.5E-07 58.8 8.0 70 15-98 36-105 (114)
305 1x48_A Interferon-induced, dou 96.6 0.0012 4.2E-08 59.5 4.0 68 17-97 7-77 (88)
306 4fzv_A Putative methyltransfer 96.6 0.0057 2E-07 67.9 9.6 124 703-833 139-286 (359)
307 3adg_A F21M12.9 protein; HYL1, 96.5 0.0023 7.7E-08 55.4 4.9 64 17-93 4-72 (73)
308 2b7t_A Double-stranded RNA-spe 96.5 0.0021 7.3E-08 55.6 4.7 65 16-94 4-71 (73)
309 2dmy_A Spermatid perinuclear R 96.5 0.0034 1.2E-07 57.5 5.9 71 13-97 13-86 (97)
310 2l2n_A Hyponastic leave 1; DSR 96.4 0.0047 1.6E-07 57.2 6.4 69 13-94 14-87 (103)
311 1uil_A Double-stranded RNA-bin 96.2 0.0065 2.2E-07 57.3 6.5 64 17-93 27-98 (113)
312 1whn_A Hypothetical protein ri 96.2 0.0073 2.5E-07 58.3 6.6 68 14-96 24-96 (128)
313 3ufb_A Type I restriction-modi 96.2 0.019 6.7E-07 66.4 11.4 121 701-833 206-364 (530)
314 2khx_A Ribonuclease 3; drosha, 96.2 0.0024 8.2E-08 57.3 3.0 38 57-94 39-76 (85)
315 2wk1_A NOVP; transferase, O-me 96.2 0.012 4E-07 63.4 8.9 118 698-830 88-242 (282)
316 3eld_A Methyltransferase; flav 96.2 0.0064 2.2E-07 66.1 6.8 122 692-830 61-189 (300)
317 1qu6_A Protein kinase PKR; dsR 96.1 0.012 4.2E-07 58.9 8.3 68 17-96 14-84 (179)
318 1whq_A RNA helicase A; double- 96.1 0.0098 3.3E-07 54.9 6.5 65 16-93 6-74 (99)
319 3lkz_A Non-structural protein 96.0 0.025 8.4E-07 61.8 10.2 126 691-833 73-206 (321)
320 1x47_A DGCR8 protein; structur 95.9 0.0081 2.8E-07 55.2 5.2 69 13-95 13-85 (98)
321 3tka_A Ribosomal RNA small sub 95.9 0.0067 2.3E-07 67.2 5.3 81 703-799 48-134 (347)
322 3p8z_A Mtase, non-structural p 95.5 0.016 5.4E-07 61.7 6.1 127 691-833 57-188 (267)
323 4dip_A Peptidyl-prolyl CIS-tra 95.4 0.049 1.7E-06 51.0 8.5 106 563-681 11-123 (125)
324 1t4n_A Ribonuclease III; DSRBD 95.2 0.017 5.8E-07 53.1 4.7 57 24-93 17-74 (94)
325 1g60_A Adenine-specific methyl 95.1 0.032 1.1E-06 58.2 7.0 54 701-758 202-255 (260)
326 1rjd_A PPM1P, carboxy methyl t 95.0 0.12 4.2E-06 56.5 11.8 127 700-828 81-229 (334)
327 2yt4_A Protein DGCR8; DSRBD, R 94.8 0.049 1.7E-06 57.0 7.4 70 11-94 17-90 (232)
328 2vn1_A 70 kDa peptidylprolyl i 94.7 0.07 2.4E-06 50.2 7.7 98 572-681 25-127 (129)
329 2l3j_A Double-stranded RNA-spe 94.7 0.075 2.6E-06 55.6 8.5 67 15-95 160-226 (236)
330 2nug_A Ribonuclease III, RNAse 94.6 0.047 1.6E-06 56.1 6.7 66 15-93 149-218 (221)
331 2pbc_A FK506-binding protein 2 94.5 0.056 1.9E-06 48.6 6.2 92 577-681 3-98 (102)
332 1o0w_A Ribonuclease III, RNAse 94.5 0.065 2.2E-06 56.3 7.5 68 15-94 178-249 (252)
333 1t4o_A Ribonuclease III; RNT1P 94.3 0.048 1.6E-06 52.0 5.4 65 16-93 8-76 (117)
334 2uyo_A Hypothetical protein ML 94.1 1.1 3.9E-05 48.4 16.4 124 698-834 85-221 (310)
335 1i4w_A Mitochondrial replicati 94.0 0.096 3.3E-06 58.1 7.8 61 712-788 58-118 (353)
336 2awg_A 38 kDa FK-506 binding p 93.8 0.2 6.8E-06 46.4 8.6 97 570-679 20-116 (118)
337 2f4e_A ATFKBP42; FKBP-like, al 93.6 0.13 4.3E-06 51.7 7.2 103 576-684 60-163 (180)
338 2cqk_A C-MPL binding protein; 93.2 0.03 1E-06 52.2 1.8 85 102-208 10-94 (101)
339 1yat_A FK506 binding protein; 93.1 0.28 9.5E-06 44.9 8.2 90 576-678 17-111 (113)
340 1qu6_A Protein kinase PKR; dsR 92.7 0.096 3.3E-06 52.4 4.9 66 14-92 102-170 (179)
341 2lgo_A FKBP; infectious diseas 92.7 0.33 1.1E-05 46.1 8.4 90 576-678 35-129 (130)
342 2l3j_A Double-stranded RNA-spe 92.7 0.16 5.5E-06 53.1 6.7 66 17-96 8-73 (236)
343 2ppn_A FK506-binding protein 1 92.5 0.32 1.1E-05 43.9 7.6 91 576-679 11-106 (107)
344 2y78_A Peptidyl-prolyl CIS-tra 92.5 0.49 1.7E-05 45.1 9.2 111 553-678 17-132 (133)
345 2px2_A Genome polyprotein [con 92.3 0.14 4.7E-06 55.0 5.7 126 691-834 52-186 (269)
346 3kz7_A FK506-binding protein 3 92.2 0.58 2E-05 43.1 9.1 90 578-679 18-118 (119)
347 3o5q_A Peptidyl-prolyl CIS-tra 92.1 0.34 1.2E-05 45.6 7.5 91 576-679 30-125 (128)
348 3o5e_A Peptidyl-prolyl CIS-tra 91.6 0.4 1.4E-05 46.2 7.6 91 576-679 46-141 (144)
349 2a11_A Ribonuclease III, RNAse 91.4 0.036 1.2E-06 57.7 0.0 38 57-94 194-231 (242)
350 3n3w_A Ribonuclease III; nucle 90.9 0.044 1.5E-06 57.7 0.0 37 57-93 210-246 (248)
351 3c4b_A Endoribonuclease dicer; 90.8 0.27 9.1E-06 51.7 5.9 64 15-93 199-262 (265)
352 2d9f_A FK506-binding protein 8 90.3 0.32 1.1E-05 46.3 5.5 105 568-684 22-126 (135)
353 2jwx_A FKBP38NTD, FK506-bindin 90.0 0.6 2.1E-05 46.1 7.3 101 567-679 47-147 (157)
354 3b7x_A FK506-binding protein 6 90.0 0.32 1.1E-05 46.3 5.1 93 576-680 37-133 (134)
355 1g55_A DNA cytosine methyltran 89.6 0.21 7.2E-06 54.5 4.0 71 713-800 2-75 (343)
356 2lkn_A AH receptor-interacting 88.7 0.67 2.3E-05 46.4 6.6 71 576-648 21-94 (165)
357 3uf8_A Ubiquitin-like protein 88.4 1.1 3.9E-05 45.9 8.2 90 576-678 115-208 (209)
358 3r24_A NSP16, 2'-O-methyl tran 88.2 1.5 5.1E-05 48.2 9.3 118 696-840 88-226 (344)
359 3g7u_A Cytosine-specific methy 87.8 0.71 2.4E-05 51.3 6.7 68 714-800 3-78 (376)
360 1r9h_A FKB-6, FK506 binding pr 87.8 0.73 2.5E-05 43.8 6.0 93 576-681 25-122 (135)
361 2kou_A Dicer-like protein 4; A 86.8 0.79 2.7E-05 42.4 5.4 60 29-103 26-92 (102)
362 3rv0_A K. polysporus DCR1; RNA 86.8 0.13 4.3E-06 57.0 0.0 41 53-95 281-321 (341)
363 1hxv_A Trigger factor; FKBP fo 86.6 1 3.5E-05 42.0 6.0 61 579-645 29-91 (113)
364 1lss_A TRK system potassium up 86.3 8.9 0.0003 34.5 12.2 102 713-840 4-111 (140)
365 2yt4_A Protein DGCR8; DSRBD, R 86.3 0.44 1.5E-05 49.8 3.7 34 57-93 164-197 (232)
366 2if4_A ATFKBP42; FKBP-like, al 85.2 0.83 2.8E-05 48.6 5.3 102 576-683 60-162 (338)
367 2py6_A Methyltransferase FKBM; 85.1 1.3 4.5E-05 49.4 7.2 48 711-758 225-273 (409)
368 2c7p_A Modification methylase 84.7 1.7 5.9E-05 47.2 7.7 68 712-800 10-78 (327)
369 3pr9_A FKBP-type peptidyl-prol 84.4 0.98 3.4E-05 44.7 5.1 58 581-646 3-77 (157)
370 1u79_A FKBP-type peptidyl-prol 83.5 1.5 5E-05 41.3 5.6 66 576-648 23-98 (129)
371 3fwz_A Inner membrane protein 83.2 5 0.00017 37.4 9.2 101 714-841 8-115 (140)
372 3jxv_A 70 kDa peptidyl-prolyl 81.5 2.8 9.5E-05 45.9 7.7 94 578-679 141-234 (356)
373 1q1c_A FK506-binding protein 4 81.4 2.9 9.8E-05 44.7 7.6 93 576-681 62-159 (280)
374 2vz8_A Fatty acid synthase; tr 81.3 0.52 1.8E-05 63.9 2.2 103 712-831 1240-1348(2512)
375 3ius_A Uncharacterized conserv 81.2 13 0.00045 37.7 12.2 93 714-832 6-104 (286)
376 3qv2_A 5-cytosine DNA methyltr 80.2 2.8 9.4E-05 45.8 7.1 70 713-800 10-83 (327)
377 2kr7_A FKBP-type peptidyl-prol 80.0 2.1 7.2E-05 41.8 5.5 62 580-647 7-71 (151)
378 2kfw_A FKBP-type peptidyl-prol 80.0 1.7 5.8E-05 44.5 5.0 61 580-647 3-66 (196)
379 1boo_A Protein (N-4 cytosine-s 79.8 1.9 6.3E-05 46.6 5.6 45 711-758 251-295 (323)
380 4dt4_A FKBP-type 16 kDa peptid 79.6 1.9 6.6E-05 43.2 5.2 61 580-647 25-89 (169)
381 3llv_A Exopolyphosphatase-rela 79.3 12 0.0004 34.5 10.1 102 713-841 6-113 (141)
382 4f3n_A Uncharacterized ACR, CO 79.2 4.6 0.00016 46.1 8.7 89 703-807 128-221 (432)
383 1x47_A DGCR8 protein; structur 79.1 1.7 5.7E-05 39.8 4.2 77 388-503 12-88 (98)
384 3cgm_A SLYD, peptidyl-prolyl C 79.1 1.8 6.2E-05 42.7 4.8 58 581-647 4-61 (158)
385 3prb_A FKBP-type peptidyl-prol 78.9 2 6.8E-05 45.2 5.2 59 581-647 3-78 (231)
386 1kt0_A FKBP51, 51 kDa FK506-bi 78.7 1.6 5.5E-05 48.5 4.8 91 576-679 42-137 (457)
387 1ix5_A FKBP; ppiase, isomerase 78.0 1.4 4.9E-05 42.9 3.7 61 580-647 2-79 (151)
388 2voo_A Lupus LA protein; RNA-b 77.9 1.1 3.6E-05 45.0 2.8 87 102-208 8-95 (193)
389 2k8i_A SLYD, peptidyl-prolyl C 76.9 1.9 6.6E-05 43.1 4.2 61 580-647 3-66 (171)
390 1eg2_A Modification methylase 75.3 3 0.0001 45.3 5.5 53 702-758 233-288 (319)
391 3adg_A F21M12.9 protein; HYL1, 74.8 3 0.0001 35.7 4.3 69 393-498 4-72 (73)
392 3vyw_A MNMC2; tRNA wobble urid 73.8 9.3 0.00032 41.8 8.9 139 685-830 61-224 (308)
393 3two_A Mannitol dehydrogenase; 72.4 7 0.00024 41.8 7.5 46 708-755 172-218 (348)
394 4h0n_A DNMT2; SAH binding, tra 71.8 2.2 7.6E-05 46.6 3.5 69 714-799 4-75 (333)
395 3c85_A Putative glutathione-re 71.6 17 0.00057 35.0 9.4 95 713-835 39-143 (183)
396 1ekz_A DSRBDIII, maternal effe 71.5 4.3 0.00015 35.0 4.6 68 392-498 7-74 (76)
397 3ubt_Y Modification methylase 71.3 6.8 0.00023 41.5 7.1 66 714-799 1-67 (331)
398 3jxv_A 70 kDa peptidyl-prolyl 71.2 6.3 0.00022 43.1 7.0 91 578-679 258-353 (356)
399 3iei_A Leucine carboxyl methyl 70.9 54 0.0018 35.9 14.2 125 707-832 84-230 (334)
400 1zkd_A DUF185; NESG, RPR58, st 70.7 9.5 0.00033 42.8 8.3 77 713-807 81-163 (387)
401 2qrv_A DNA (cytosine-5)-methyl 70.0 5.4 0.00018 42.9 6.0 71 712-800 15-90 (295)
402 1p5q_A FKBP52, FK506-binding p 69.1 12 0.00041 39.6 8.3 93 576-682 36-132 (336)
403 3l4b_C TRKA K+ channel protien 68.2 27 0.00091 34.7 10.3 102 715-842 2-110 (218)
404 3oe2_A Peptidyl-prolyl CIS-tra 66.2 10 0.00035 39.4 6.9 89 576-679 128-217 (219)
405 1q1c_A FK506-binding protein 4 65.0 6.3 0.00021 42.0 5.2 94 576-683 179-276 (280)
406 1id1_A Putative potassium chan 63.9 53 0.0018 30.6 10.9 105 713-841 3-115 (153)
407 3l9w_A Glutathione-regulated p 63.1 52 0.0018 36.8 12.4 103 713-842 4-113 (413)
408 3me5_A Cytosine-specific methy 63.1 7.6 0.00026 44.8 5.7 60 713-788 88-147 (482)
409 2oo3_A Protein involved in cat 61.9 3.4 0.00012 44.7 2.4 75 711-802 90-168 (283)
410 1di2_A XLRBPA, double stranded 60.8 6.9 0.00024 33.0 3.7 68 393-498 1-68 (69)
411 2aef_A Calcium-gated potassium 60.8 50 0.0017 33.0 10.7 99 713-842 9-116 (234)
412 3pvc_A TRNA 5-methylaminomethy 60.6 8.1 0.00028 45.6 5.5 152 682-833 19-212 (689)
413 2ew2_A 2-dehydropantoate 2-red 59.3 86 0.0029 32.1 12.4 101 714-833 4-109 (316)
414 1lnq_A MTHK channels, potassiu 57.7 48 0.0017 35.1 10.5 102 713-842 115-222 (336)
415 1q6h_A FKBP-type peptidyl-prol 57.5 14 0.00048 38.4 6.1 87 576-678 132-222 (224)
416 3adj_A F21M12.9 protein; HYL1, 57.0 7.1 0.00024 33.7 3.2 68 394-498 6-73 (76)
417 2l2n_A Hyponastic leave 1; DSR 55.5 11 0.00037 34.7 4.3 70 392-498 17-86 (103)
418 3ps9_A TRNA 5-methylaminomethy 54.9 22 0.00076 41.7 7.9 151 682-832 27-219 (676)
419 1fd9_A Protein (macrophage inf 54.7 15 0.0005 37.9 5.6 90 576-680 117-210 (213)
420 2g1u_A Hypothetical protein TM 54.6 26 0.00089 32.9 7.0 102 711-838 17-125 (155)
421 3adl_A RISC-loading complex su 54.5 12 0.0004 33.6 4.3 76 385-498 8-83 (88)
422 1uil_A Double-stranded RNA-bin 53.9 8.3 0.00028 36.1 3.3 87 379-499 13-99 (113)
423 3goh_A Alcohol dehydrogenase, 53.6 14 0.00048 38.8 5.4 47 706-755 136-183 (315)
424 2dph_A Formaldehyde dismutase; 53.4 13 0.00044 40.7 5.2 49 706-755 179-228 (398)
425 2db2_A KIAA0890 protein; DSRM 53.0 25 0.00087 33.4 6.3 92 13-113 14-111 (119)
426 3ggo_A Prephenate dehydrogenas 51.6 48 0.0016 35.5 9.3 93 713-831 33-127 (314)
427 1jvw_A Macrophage infectivity 51.5 14 0.00046 36.7 4.6 92 576-682 48-144 (167)
428 2dix_A Interferon-inducible do 51.2 16 0.00056 32.2 4.6 69 391-498 7-75 (84)
429 1f8f_A Benzyl alcohol dehydrog 51.2 16 0.00054 39.4 5.5 51 704-755 182-233 (371)
430 2f1k_A Prephenate dehydrogenas 50.5 73 0.0025 32.5 10.1 88 715-832 2-91 (279)
431 1uhz_A Staufen (RNA binding pr 50.3 11 0.00038 33.8 3.4 70 391-498 5-74 (89)
432 1whn_A Hypothetical protein ri 49.0 20 0.00068 34.4 5.2 81 378-498 12-93 (128)
433 4g65_A TRK system potassium up 48.7 44 0.0015 37.8 8.8 98 713-836 3-107 (461)
434 3tos_A CALS11; methyltransfera 48.6 1.1E+02 0.0037 32.5 11.2 107 711-829 68-214 (257)
435 3ado_A Lambda-crystallin; L-gu 47.9 1.8E+02 0.0061 31.7 13.1 160 712-892 5-183 (319)
436 1pl8_A Human sorbitol dehydrog 45.7 29 0.001 37.2 6.4 48 706-755 165-214 (356)
437 2cpn_A TAR RNA-binding protein 45.5 14 0.00048 33.1 3.3 69 392-498 16-84 (89)
438 3s2e_A Zinc-containing alcohol 44.5 30 0.001 36.7 6.2 48 706-755 160-208 (340)
439 4e12_A Diketoreductase; oxidor 43.4 36 0.0012 35.4 6.6 106 714-831 5-120 (283)
440 2dpo_A L-gulonate 3-dehydrogen 42.8 67 0.0023 34.7 8.7 163 713-895 6-186 (319)
441 3oig_A Enoyl-[acyl-carrier-pro 41.8 1.7E+02 0.0058 29.4 11.2 77 711-802 5-96 (266)
442 1zcj_A Peroxisomal bifunctiona 41.8 65 0.0022 36.4 8.8 107 713-830 37-148 (463)
443 1kol_A Formaldehyde dehydrogen 39.3 41 0.0014 36.5 6.5 48 707-755 180-228 (398)
444 4dvj_A Putative zinc-dependent 38.5 67 0.0023 34.6 7.9 42 712-755 171-215 (363)
445 4e6p_A Probable sorbitol dehyd 38.5 77 0.0026 32.1 8.0 74 711-803 6-92 (259)
446 1yqd_A Sinapyl alcohol dehydro 38.2 41 0.0014 36.3 6.2 46 708-755 182-229 (366)
447 3d4o_A Dipicolinate synthase s 38.0 1.3E+02 0.0043 31.6 9.8 91 710-832 152-244 (293)
448 3uog_A Alcohol dehydrogenase; 37.9 48 0.0017 35.6 6.7 53 701-755 178-231 (363)
449 1e3j_A NADP(H)-dependent ketos 37.0 48 0.0016 35.3 6.4 48 706-755 162-210 (352)
450 2g5c_A Prephenate dehydrogenas 36.1 2.2E+02 0.0074 29.1 11.0 91 714-831 2-95 (281)
451 3c24_A Putative oxidoreductase 36.0 1.5E+02 0.005 30.7 9.8 87 714-832 12-101 (286)
452 1v3u_A Leukotriene B4 12- hydr 35.6 39 0.0013 35.6 5.4 49 704-754 137-187 (333)
453 3lyl_A 3-oxoacyl-(acyl-carrier 34.9 93 0.0032 30.9 7.8 75 712-802 4-91 (247)
454 2rir_A Dipicolinate synthase, 34.7 84 0.0029 33.0 7.8 91 710-832 154-246 (300)
455 3o26_A Salutaridine reductase; 34.1 95 0.0033 31.6 7.9 77 712-803 11-101 (311)
456 3f9i_A 3-oxoacyl-[acyl-carrier 34.1 86 0.0029 31.2 7.4 75 710-803 11-94 (249)
457 2vhw_A Alanine dehydrogenase; 34.1 42 0.0014 36.8 5.5 43 711-756 166-210 (377)
458 3fpc_A NADP-dependent alcohol 34.0 87 0.003 33.3 7.8 49 706-755 160-209 (352)
459 3e8x_A Putative NAD-dependent 33.9 81 0.0028 31.0 7.1 72 711-804 19-95 (236)
460 3qiv_A Short-chain dehydrogena 33.3 1.1E+02 0.0038 30.5 8.1 76 712-803 8-96 (253)
461 3o38_A Short chain dehydrogena 33.2 1.2E+02 0.004 30.6 8.3 78 711-803 20-111 (266)
462 1bg6_A N-(1-D-carboxylethyl)-L 32.9 92 0.0032 32.8 7.8 102 714-833 5-110 (359)
463 1cdo_A Alcohol dehydrogenase; 32.7 39 0.0013 36.4 4.9 50 704-755 184-235 (374)
464 1pqw_A Polyketide synthase; ro 32.6 26 0.00089 33.9 3.2 47 706-754 32-80 (198)
465 1y1p_A ARII, aldehyde reductas 32.5 2.2E+02 0.0077 29.0 10.5 79 712-806 10-96 (342)
466 1uuf_A YAHK, zinc-type alcohol 32.4 45 0.0016 36.1 5.4 46 708-755 190-236 (369)
467 1pjc_A Protein (L-alanine dehy 32.2 65 0.0022 35.1 6.6 42 712-756 166-209 (361)
468 1kt0_A FKBP51, 51 kDa FK506-bi 32.0 72 0.0025 35.2 7.0 92 578-683 160-254 (457)
469 3d1l_A Putative NADP oxidoredu 31.8 1.7E+02 0.0057 29.7 9.2 92 713-834 10-104 (266)
470 2cdc_A Glucose dehydrogenase g 31.8 1.2E+02 0.0041 32.5 8.6 41 713-755 181-225 (366)
471 2jhf_A Alcohol dehydrogenase E 31.8 41 0.0014 36.2 4.9 50 704-755 183-234 (374)
472 4da9_A Short-chain dehydrogena 31.7 1.2E+02 0.004 31.3 8.2 81 707-803 23-117 (280)
473 2ae2_A Protein (tropinone redu 31.1 1E+02 0.0034 31.2 7.4 75 712-802 8-96 (260)
474 3nx4_A Putative oxidoreductase 31.0 71 0.0024 33.4 6.4 39 715-755 149-189 (324)
475 1p0f_A NADP-dependent alcohol 30.5 37 0.0013 36.6 4.2 51 704-755 183-234 (373)
476 1x49_A Interferon-induced, dou 30.3 39 0.0013 30.7 3.7 68 393-498 15-82 (97)
477 1e3i_A Alcohol dehydrogenase, 30.2 45 0.0015 35.9 4.8 50 704-755 187-238 (376)
478 3m6i_A L-arabinitol 4-dehydrog 30.1 62 0.0021 34.6 5.9 49 706-756 173-223 (363)
479 2wsb_A Galactitol dehydrogenas 29.9 1.2E+02 0.0041 30.0 7.6 73 711-802 9-94 (254)
480 2cfc_A 2-(R)-hydroxypropyl-COM 29.8 1.8E+02 0.0062 28.6 8.9 75 713-802 2-89 (250)
481 3gt0_A Pyrroline-5-carboxylate 29.8 41 0.0014 34.1 4.2 94 714-834 3-99 (247)
482 2eez_A Alanine dehydrogenase; 29.6 69 0.0024 34.9 6.3 42 711-755 164-207 (369)
483 3abi_A Putative uncharacterize 29.6 16 0.00055 39.6 1.2 40 712-754 15-55 (365)
484 1t11_A Trigger factor, TF; hel 29.5 41 0.0014 37.5 4.5 59 580-644 161-221 (392)
485 3p2y_A Alanine dehydrogenase/p 29.4 17 0.0006 40.7 1.5 41 712-755 183-225 (381)
486 1ae1_A Tropinone reductase-I; 29.1 1.1E+02 0.0039 31.1 7.5 77 711-803 19-109 (273)
487 4g65_A TRK system potassium up 29.1 2.1E+02 0.0071 32.4 10.2 106 711-841 233-343 (461)
488 2fzw_A Alcohol dehydrogenase c 28.8 41 0.0014 36.1 4.2 50 704-755 182-233 (373)
489 4b7c_A Probable oxidoreductase 28.4 47 0.0016 35.1 4.5 51 703-755 140-192 (336)
490 3mog_A Probable 3-hydroxybutyr 28.3 1.6E+02 0.0054 33.7 9.1 101 713-830 5-118 (483)
491 3swr_A DNA (cytosine-5)-methyl 28.3 59 0.002 40.8 6.0 44 712-756 539-582 (1002)
492 2hmt_A YUAA protein; RCK, KTN, 28.2 1E+02 0.0036 27.3 6.3 104 712-841 5-114 (144)
493 3tjr_A Short chain dehydrogena 28.1 1.4E+02 0.0048 31.1 8.1 78 709-802 27-117 (301)
494 4fn4_A Short chain dehydrogena 27.9 1.5E+02 0.0051 31.0 8.2 75 711-801 5-92 (254)
495 4dcm_A Ribosomal RNA large sub 27.7 5.5E+02 0.019 27.9 13.1 111 702-834 27-139 (375)
496 1fmc_A 7 alpha-hydroxysteroid 27.5 83 0.0028 31.1 6.0 76 712-803 10-98 (255)
497 2dmy_A Spermatid perinuclear R 27.5 44 0.0015 30.2 3.6 72 387-498 11-82 (97)
498 2b7v_A Double-stranded RNA-spe 27.4 80 0.0027 26.6 5.0 39 453-499 30-68 (71)
499 2j3h_A NADP-dependent oxidored 27.1 50 0.0017 34.9 4.5 50 704-755 147-198 (345)
500 3imf_A Short chain dehydrogena 26.3 1.5E+02 0.0051 29.9 7.7 75 712-802 5-92 (257)
No 1
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-280 Score=2436.30 Aligned_cols=895 Identities=52% Similarity=0.838 Sum_probs=741.1
Q ss_pred CCCCcccccccCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHH
Q 002222 3 NGGLSVVAVRKMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQ 82 (951)
Q Consensus 3 ~~~~~~~~~~~~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq 82 (951)
|+|+ +|+|+|||||||||||+|||||||||||++|+|||||||||||||||||+||||||+||||+|||||||||
T Consensus 9 ~~~~-----~~~~~~pk~~~~q~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq 83 (950)
T 3htx_A 9 MAGG-----GKHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQ 83 (950)
T ss_dssp -----------CCCCCHHHHHHTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHH
T ss_pred ccCC-----CCCCCCHHHHHHHHhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHH
Confidence 5666 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeeccccccc
Q 002222 83 SAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANL 162 (951)
Q Consensus 83 ~aa~~al~klg~~~~~~~~~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ 162 (951)
+||++||+||||+|+|++||++|+||+||+||+|+|+|||++++|||+|||||||||||||||+||+||||+||+||+|+
T Consensus 84 ~aa~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ 163 (950)
T 3htx_A 84 SAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSR 163 (950)
T ss_dssp HHHHHHHTTTTSTTTSCCCCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCccccCcchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccchHHHHHHHHHHhhccCCcEEeecCceeeeecCCCChhhhhhhhhhccCCCCcEEEEEEEecccccccee
Q 002222 163 CKLINPKVESSHLLVLTYIMRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAVH 242 (951)
Q Consensus 163 ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~av~ip~~~~~~~~ 242 (951)
||+|||+||+||||++|||||||++|||++ ||++| |||||+|||||||++++++||+++|+|+||||||||++|++|+
T Consensus 164 ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (950)
T 3htx_A 164 CKIINPSVESDPFLAISYVMKAAAKLADYI-VASPH-GLRRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVE 241 (950)
T ss_dssp HHHHCTHHHHCTHHHHHHHHHHHHHCCSSE-EEETT-EEEESSCCCHHHHHHHHHTCCCC---EEEEEEEECSSTTSCCE
T ss_pred hhhcCcccccChHHHHHHHHHHhhcCCCcE-EeCCc-ccccCCCCCHHHHHHHHHHhcCCCcceEEEEEEeeccccccee
Confidence 999999999999999999999999999966 89999 9999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcchHHHHHHhcCCCCCCeEEEEeeccCCCc--ceEEeeecCccccccccCC---CCCccccccccCCCCCc
Q 002222 243 PVTLNVSSTGYYLDVIARNLDQTDGNKILVSRTIGKASS--EMRLYFAAPKSYLLDLSSD---LPNVEEVVDFEGSLNPR 317 (951)
Q Consensus 243 ~~~l~~~~~~~y~~~ia~~l~~~d~~~v~~sr~~~k~~~--e~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~n~r 317 (951)
+|||||||++||||+||++||++|+|||||||||||||| ||||||+||| +++|++|+ ++|++| +|+||++|+|
T Consensus 242 ~~~~~~~~~~~y~~~~a~~l~~~d~~~~~~sr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~n~r 319 (950)
T 3htx_A 242 LDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPK-KYLDNSSDASGTSNEDS-SHIVKSRNAR 319 (950)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSCSSSEEECCCBCHHHHSSCBEEEEECCH-HHHCCC-------------CCCCCBCHH
T ss_pred eeEEEecCCcchHHHHHHHhCCCccceEEEEeeccCCCCCcceeEEEecch-hhhhhhhcccccccccc-cccccccccc
Confidence 999999999999999999999999999999999999999 9999999999 66677776 999999 9999999999
Q ss_pred cccccccccccceeeeeccceeecCCccccccchhhhhhhhhccCCCcccccchhhhhhhcCCcceeeccccCCCChhhH
Q 002222 318 ASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRMLIHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREM 397 (951)
Q Consensus 318 as~~~~~~i~g~ai~a~~g~~~~~~~l~~~~~~~~~~~r~~~~~~p~g~yk~sr~~~~~a~lp~~~t~~~~w~g~~pr~~ 397 (951)
|||||||+||||||||+|||||||++||||||||+|||||||||+|||||||||+||||||||++||||+||||+|||||
T Consensus 320 a~~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~~~~~p~g~~k~sr~~~~~a~lp~~~t~~~~w~g~~pr~~ 399 (950)
T 3htx_A 320 ASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPNGIYKISRQAVIAAQLPFAFTTKSNWRGPLPREI 399 (950)
T ss_dssp HHHHHTSCCBSCEEEEEEEECSSCSSEEEECCCHHHHHHHHHTTSHHHHHHHHHTCTTTBCCCSCCCCTTTCCSSCHHHH
T ss_pred ceeeecccccchhhhhhcCccccccccccccchhhhhHHHHhccCCCcceecchhhhhhhcCCcceecccccCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCc------eeEEEEEeeccCCccc
Q 002222 398 LFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDN------VRCEVKIFSKSRDPIL 471 (951)
Q Consensus 398 l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------f~c~v~~~s~~~~~~~ 471 (951)
||+|||||||+||+|+++++|+|++|+++||++++ ++++++++| ||+|+++++| |||||||+||+|||||
T Consensus 400 l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~f~c~~~~~~~~~~~~~ 475 (950)
T 3htx_A 400 LGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKL---KVSGVDDAN-ENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVL 475 (950)
T ss_dssp HHHHHHTTTCCCCEEECCC------------------------------------------------CEEEEEETTEEEE
T ss_pred HHHHHHHhhcCcceeeeccCccccccccccccccc---cccccchhh-hcCCcccCCCCCcccceEEEEEEEecccchhh
Confidence 99999999999999999999999999999999999 778888888 9999999988 9999999999999999
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCccccccccCcCCeeeccchhhhhcccccchhccccccccccccc
Q 002222 472 ECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLLQ 551 (951)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (951)
||||+++|+||||||||||||||+|||+|||+||||+||||+++|++||+|+|+||+|||+|||| |
T Consensus 476 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 541 (950)
T 3htx_A 476 ECSPRKFYEKENDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQK--------------E 541 (950)
T ss_dssp EECCSCCCSSHHHHHHHHHHHHHHHHHTSSCCC-----------------------------------------------
T ss_pred ccChhhhhhhccHHHHHHHHHHHHHHHHHHhccCCchhhcccccccccccccchhhhhhhhcccc--------------c
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccCCCCceeeeccCCCCCCccCCCCceeEEEEEEEEeecccchhh---------------------------h
Q 002222 552 ANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKE---------------------------L 604 (951)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~---------------------------~ 604 (951)
++|++++|+++|+++++++| |||||+||||+||||+||+++|| +
T Consensus 542 ~~~~~~~~~~~~~~~~~~~i---------~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (950)
T 3htx_A 542 HSSESKNTNVLSAEKRVQSI---------TNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEP 612 (950)
T ss_dssp -CCCEECC----------CC---------CTTEEEEEEEEEEEEECC----------------------------CCCEE
T ss_pred cccccccccccccceeeecc---------CCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhc
Confidence 99999999999999999999 99999999999999999999999 9
Q ss_pred hccccceEEEeccCccchhhhhhhhhccccccceecccCC--chhhhhhhccCcccchhcccccccccceeeeecccCCC
Q 002222 605 LESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP--PQELILAAADDSARTFSLLSSRACCLEYHITLLRVTEP 682 (951)
Q Consensus 605 ~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~--~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~ep 682 (951)
||||+||+||||.|+++++|+.+|+|||+||+++|.+.+| |++|+++|........+.|+...+| +|....+...+.
T Consensus 613 ies~~e~~fe~g~g~~~~~le~vV~qms~gqT~~F~~~~Pd~p~eLLLaAa~ep~R~~slLsre~~f-Eyals~lay~de 691 (950)
T 3htx_A 613 IESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCL-NYNILLLGVKGP 691 (950)
T ss_dssp EEEEEEEEEEETTTCBCHHHHHHHTTCCTTCEEEEEESSCCSCHHHHHHHCSCHHHHHHHTTSCEEE-EEEEEEEEEECS
T ss_pred ccccHHHHHHHhcCCccchhhheeeeccccceeEEeccCcchHHHHHHHHhhcchhhhhhcchhhhh-hHHhhhhccccc
Confidence 9999999999999999999999999999999999999999 9999999999999999999999998 999999988888
Q ss_pred hhhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhh
Q 002222 683 PEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 762 (951)
Q Consensus 683 ~EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls 762 (951)
.+++++...|.||++.+|++++.+.+...++.+|||||||+|.++..|++.+++..+|+|||+|+.|++.|++++.....
T Consensus 692 a~p~me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~ln 771 (950)
T 3htx_A 692 SEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN 771 (950)
T ss_dssp CCCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred hhhHHhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccc
Confidence 88999999999999999999999999888999999999999999999999874457999999999999999987764321
Q ss_pred cccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHh
Q 002222 763 KKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQK 842 (951)
Q Consensus 763 ~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~ 842 (951)
. .+.+..+++++++|+.++++.+++||+|+|.+++||++++....+.++++++||||.++|+|||.+||..+..
T Consensus 772 A------kr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIISTPN~eyN~lF~~ 845 (950)
T 3htx_A 772 K------EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNTILQR 845 (950)
T ss_dssp T------TCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGGHHHHTC
T ss_pred h------hhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEecCchhhhhhhh
Confidence 1 0234568999999999999988999999999999999987777788889999999999999999999999986
Q ss_pred hccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCCCCCC
Q 002222 843 SSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPEE 922 (951)
Q Consensus 843 L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~~~~~~ 922 (951)
+....+..+|+.. ....+|+.+|+|+|++++|+.|++.++.++||.|+|.|+|+.+.++.|++||||||+| ..+..
T Consensus 846 Lnp~tr~~dPd~~---~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR-~~~g~ 921 (950)
T 3htx_A 846 STPETQEENNSEP---QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR-EASSV 921 (950)
T ss_dssp C---------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE-SCC--
T ss_pred ccccccccccccc---ccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE-CCCch
Confidence 5333333343331 3467899999999999999999999999999999999999987778999999999999 66666
Q ss_pred cccccCCCCccceeEEEEecCCCC
Q 002222 923 DDLLKDGDSAHHYKVIWEWDGNGL 946 (951)
Q Consensus 923 ~~~~~~~~~~~~Yk~v~~w~~~~~ 946 (951)
+.+.... -.+||++|||.++..
T Consensus 922 d~l~e~~--~~~~~~~W~w~~~~~ 943 (950)
T 3htx_A 922 ENVAESS--MQPYKVIWEWKKEDV 943 (950)
T ss_dssp ---CCCC--CCCSCEEEEEECC--
T ss_pred hhcchhh--cchHHHhcccCCccc
Confidence 6666554 489999999988764
No 2
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.96 E-value=2.2e-28 Score=244.32 Aligned_cols=202 Identities=37% Similarity=0.616 Sum_probs=168.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002222 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
..+++++|++++.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.... . +..
T Consensus 10 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~-----~~~ 81 (219)
T 3jwg_A 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDR--L-----PEM 81 (219)
T ss_dssp --CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGG--S-----CHH
T ss_pred CCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhc--c-----ccc
Confidence 348999999999999988889999999999999999999876 34699999999999999998764210 0 000
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCC
Q 002222 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDP 852 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYP 852 (951)
...++++.++|+...+...++||+|+|..+++|++++....+.+++.++||||++++.+||.+++..+..+
T Consensus 82 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~--------- 152 (219)
T 3jwg_A 82 QRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNL--------- 152 (219)
T ss_dssp HHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT---------
T ss_pred cCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhccc---------
Confidence 11279999999988887788999999999999999777677778899999999999999998887665432
Q ss_pred chhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002222 853 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 853 de~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~~ 918 (951)
....+++.+|.++|++++|..|++.++.++||+|++.|+|..+. ..|+++|||||+|-.
T Consensus 153 ------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~-~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 153 ------FEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD-EFGSPTQMGVFTLGA 211 (219)
T ss_dssp -----------GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCT-TSCCSEEEEEEEECC
T ss_pred ------CcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccc-cCCCCeEEEEEeccC
Confidence 23457889999999999999999999999999999999998754 799999999999944
No 3
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.96 E-value=1.3e-27 Score=238.86 Aligned_cols=202 Identities=38% Similarity=0.673 Sum_probs=164.2
Q ss_pred CC-hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 693 SP-PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 693 ~P-PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
.| +++.+|++++.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.... . +.
T Consensus 9 ~p~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~-----~~ 80 (217)
T 3jwh_A 9 KPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLR--L-----PR 80 (217)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCC--C-----CH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhc--C-----Cc
Confidence 45 8999999999999998889999999999999999999876 34699999999999999998764210 0 00
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCC
Q 002222 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDD 851 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eY 851 (951)
....+++++++|+...+...++||+|+|..+++|++++....+.+++.++||||++++.+||.+++..+..+
T Consensus 81 ~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~-------- 152 (217)
T 3jwh_A 81 NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANL-------- 152 (217)
T ss_dssp HHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC----------
T ss_pred ccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccc--------
Confidence 011279999999988877778999999999999999777777778899999999999999998888776433
Q ss_pred CchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002222 852 PDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 852 Pde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~~ 918 (951)
....+++.+|.++|++++|..|++.++.++||+|++.|+|... ++.|+++||++|..+.
T Consensus 153 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~~-~~~g~~~q~~~~~~~~ 211 (217)
T 3jwh_A 153 -------PAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEAD-PEVGSPTQMAVFIHRG 211 (217)
T ss_dssp ----------------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCCC-SSSCCSEEEEEEEECC
T ss_pred -------ccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCcc-CCCCchheeEeeeecc
Confidence 2345788999999999999999999999999999999999874 4799999999998754
No 4
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.69 E-value=3.9e-16 Score=155.96 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 699 QRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 699 QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
.+++++.+.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++.. . ++
T Consensus 28 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--------------~--~v 88 (250)
T 2p7i_A 28 VMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK--------------D--GI 88 (250)
T ss_dssp THHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC--------------S--CE
T ss_pred hHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh--------------C--Ce
Confidence 355666666653 467899999999999999999987 589999999999999987631 1 79
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHH-HccCCC-EEEEEecCCchhHHHHhhccCccCCCCchh
Q 002222 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVL-SSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEK 855 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~-RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~ 855 (951)
++.++|+.++ +.+++||+|++.+++||+++ .. .+.+++. ++|||| .+++++||............ ..++...
T Consensus 89 ~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~-~~-~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---~~~~~~~ 162 (250)
T 2p7i_A 89 TYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD-PV-ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKM---GIISHNS 162 (250)
T ss_dssp EEEESCGGGC-CCSSCEEEEEEESCGGGCSS-HH-HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHT---TSSSSTT
T ss_pred EEEEccHHHc-CcCCcccEEEEhhHHHhhcC-HH-HHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHc---Cccccch
Confidence 9999999888 46788999999999999984 43 4446799 999998 88999999764432221100 0010000
Q ss_pred hhhccc-cccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002222 856 TQLQSC-KFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 899 (951)
Q Consensus 856 ~~~~~~-~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG~ 899 (951)
... ......|...++++++.+| +.++||.+. ..++..
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~~~----l~~~Gf~~~~~~~~~~ 201 (250)
T 2p7i_A 163 ---AVTEAEFAHGHRCTYALDTLERD----ASRAGLQVTYRSGIFF 201 (250)
T ss_dssp ---CCCHHHHHTTCCCCCCHHHHHHH----HHHTTCEEEEEEEEEE
T ss_pred ---hcccccccccccccCCHHHHHHH----HHHCCCeEEEEeeeEe
Confidence 000 0113456677999999954 667899875 444444
No 5
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.68 E-value=2.7e-16 Score=161.20 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
..++.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|++++.. .+..+++
T Consensus 24 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~------------~~~~~v~ 88 (260)
T 1vl5_A 24 SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG------------NGHQQVE 88 (260)
T ss_dssp CCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------TTCCSEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHh------------cCCCceE
Confidence 345567777777788999999999999999999987 5999999999999999887642 2334799
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhh
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 857 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~ 857 (951)
+.++|+.++++++++||+|++..+++|++ +.... .+++.++|||| .+++.++....++.+..+..
T Consensus 89 ~~~~d~~~l~~~~~~fD~V~~~~~l~~~~-d~~~~-l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~------------ 154 (260)
T 1vl5_A 89 YVQGDAEQMPFTDERFHIVTCRIAAHHFP-NPASF-VSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN------------ 154 (260)
T ss_dssp EEECCC-CCCSCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH------------
T ss_pred EEEecHHhCCCCCCCEEEEEEhhhhHhcC-CHHHH-HHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHH------------
Confidence 99999999998889999999999999998 44344 45799999999 66666554322222221100
Q ss_pred hccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002222 858 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 858 ~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
.....+...|...++.+++.+| +.+.||.+.
T Consensus 155 -~~~~~~~~~~~~~~~~~~~~~~----l~~aGf~~~ 185 (260)
T 1vl5_A 155 -YVEKERDYSHHRAWKKSDWLKM----LEEAGFELE 185 (260)
T ss_dssp -HHHHHHCTTCCCCCBHHHHHHH----HHHHTCEEE
T ss_pred -HHHHhcCccccCCCCHHHHHHH----HHHCCCeEE
Confidence 0111233455667889888854 566788764
No 6
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.66 E-value=4e-16 Score=158.41 Aligned_cols=169 Identities=11% Similarity=0.132 Sum_probs=125.3
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC
Q 002222 690 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 769 (951)
Q Consensus 690 ~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~ 769 (951)
..+..+......+.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----------- 99 (266)
T 3ujc_A 33 ENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVS----------- 99 (266)
T ss_dssp TTCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCC-----------
T ss_pred CCccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhh-----------
Confidence 3445556666666677777667788999999999999999998732 799999999999999987532
Q ss_pred CCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch----hHHHHhhc
Q 002222 770 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY----NAILQKSS 844 (951)
Q Consensus 770 Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf----N~lf~~L~ 844 (951)
.. .++++.++|+.++++.+++||+|++..+++|++++....+.+++.++|||| .+++.+++... ...+..
T Consensus 100 --~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~-- 174 (266)
T 3ujc_A 100 --GN-NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKE-- 174 (266)
T ss_dssp --SC-TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHH--
T ss_pred --cC-CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHH--
Confidence 11 589999999999988889999999999999997666667777899999998 77787775432 111111
Q ss_pred cCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002222 845 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 898 (951)
Q Consensus 845 ~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG 898 (951)
.....|...++.+++.. ++.+.||.+. ...++
T Consensus 175 ------------------~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 175 ------------------YVKQRKYTLITVEEYAD----ILTACNFKNVVSKDLS 207 (266)
T ss_dssp ------------------HHHHHTCCCCCHHHHHH----HHHHTTCEEEEEEECH
T ss_pred ------------------HHhcCCCCCCCHHHHHH----HHHHcCCeEEEEEeCC
Confidence 11112334578888884 5677899763 44333
No 7
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.65 E-value=1.7e-15 Score=150.58 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=120.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+..+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++. .++++.
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~ 94 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP----------------KEFSIT 94 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC----------------TTCCEE
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC----------------CceEEE
Confidence 3455566666688899999999999999999986 799999999999999987531 378999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccC-ccCCCCchhhhh
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSST-IQEDDPDEKTQL 858 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~-~~~eYPde~~~~ 858 (951)
++|+.++++. ++||+|++..+++|++++....+.+++.++|||| .+++.+|+......+...... ....|..
T Consensus 95 ~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----- 168 (220)
T 3hnr_A 95 EGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQ----- 168 (220)
T ss_dssp SCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHH-----
T ss_pred eCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCcc-----
Confidence 9999999887 8999999999999999766555667899999999 888888876543322211000 0001100
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeec
Q 002222 859 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVG 898 (951)
Q Consensus 859 ~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG 898 (951)
. .....+.+.++.+++. .++.++||+|+.....
T Consensus 169 --~-~~~~~~~~~~~~~~~~----~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 169 --L-ANDLQTEYYTRIPVMQ----TIFENNGFHVTFTRLN 201 (220)
T ss_dssp --H-HHHHHHSCCCBHHHHH----HHHHHTTEEEEEEECS
T ss_pred --c-hhhcchhhcCCHHHHH----HHHHHCCCEEEEeecc
Confidence 0 0001112335777777 5678899998876554
No 8
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.65 E-value=8.1e-16 Score=151.43 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=111.9
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
+.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++. .++++.++|+.++++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~~ 101 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITDLSDSPK 101 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGGGGGSCC
T ss_pred CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCcccccccCCC
Confidence 7899999999999999999986 69999999999999998752 268999999999988889
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCccc
Q 002222 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 871 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkFE 871 (951)
.||+|++..+++|++.+....+.+++.++|+|| .+++.+++.... .. . .....+...
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~-----------------~--~~~~~~~~~ 159 (203)
T 3h2b_A 102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSL---EP-----------------M--YHPVATAYR 159 (203)
T ss_dssp CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC---EE-----------------E--CCSSSCEEE
T ss_pred CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCch---hh-----------------h--hchhhhhcc
Confidence 999999999999998655566677899999999 888888875431 00 0 112235567
Q ss_pred cCHHHHHHHHHHHHHHcCcEEEEEee
Q 002222 872 WTRDQFNCWATELAARHNYSVEFSGV 897 (951)
Q Consensus 872 WTreEFqaWae~LA~r~GYsVEf~GV 897 (951)
|+.+++.. ++.+.||.+.-...
T Consensus 160 ~~~~~~~~----~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 160 WPLPELAQ----ALETAGFQVTSSHW 181 (203)
T ss_dssp CCHHHHHH----HHHHTTEEEEEEEE
T ss_pred CCHHHHHH----HHHHCCCcEEEEEe
Confidence 89999985 56778998865443
No 9
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.64 E-value=3.2e-15 Score=150.36 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=116.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+++.+.+. ++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++. ...++++++
T Consensus 45 ~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---------------~~~~~~~~~ 104 (242)
T 3l8d_A 45 PFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERG---------------EGPDLSFIK 104 (242)
T ss_dssp HHHHHHSC--TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTT---------------CBTTEEEEE
T ss_pred HHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhc---------------ccCCceEEE
Confidence 34444443 67899999999999999999986 69999999999999997642 235899999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhcc
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 860 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~ 860 (951)
+|+.++++.+++||+|++..+++|++ +.... .+++.++|+|| .+++.+++.......... .
T Consensus 105 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----------------~ 166 (242)
T 3l8d_A 105 GDLSSLPFENEQFEAIMAINSLEWTE-EPLRA-LNEIKRVLKSDGYACIAILGPTAKPRENSY----------------P 166 (242)
T ss_dssp CBTTBCSSCTTCEEEEEEESCTTSSS-CHHHH-HHHHHHHEEEEEEEEEEEECTTCGGGGGGG----------------G
T ss_pred cchhcCCCCCCCccEEEEcChHhhcc-CHHHH-HHHHHHHhCCCeEEEEEEcCCcchhhhhhh----------------h
Confidence 99999998889999999999999997 44344 45799999998 888888775433222111 1
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEee
Q 002222 861 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGV 897 (951)
Q Consensus 861 ~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GV 897 (951)
..+....|...++++++.. ++.++||.+. ..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 167 RLYGKDVVCNTMMPWEFEQ----LVKEQGFKVVDGIGV 200 (242)
T ss_dssp GGGTCCCSSCCCCHHHHHH----HHHHTTEEEEEEEEE
T ss_pred hhccccccccCCCHHHHHH----HHHHcCCEEEEeecc
Confidence 1233445666789999884 5678899875 3434
No 10
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.64 E-value=3.1e-15 Score=150.35 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 695 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 695 PL~~QR~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
|.+...++.+.+.+. ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++. .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------------~ 90 (234)
T 3dtn_A 26 PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFR--------------G 90 (234)
T ss_dssp TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTC--------------S
T ss_pred cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhc--------------c
Confidence 445555566777665 4567899999999999999999875 34799999999999999988643 1
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH--------Hhhc
Q 002222 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL--------QKSS 844 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf--------~~L~ 844 (951)
..++++.++|+.++++. +.||+|++..+++|++++....+.+++.++|||| .+++.++........ ....
T Consensus 91 ~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (234)
T 3dtn_A 91 NLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYV 169 (234)
T ss_dssp CTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHH
Confidence 12899999999998877 8999999999999999776666777899999999 777777654322211 1110
Q ss_pred cCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002222 845 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 845 ~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
. ...++.... ...+....|...++.+++.+ ++.++||++.
T Consensus 170 ~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----ll~~aGF~~v 209 (234)
T 3dtn_A 170 E--NSGLTEEEI---AAGYERSKLDKDIEMNQQLN----WLKEAGFRDV 209 (234)
T ss_dssp H--TSSCCHHHH---HTTC----CCCCCBHHHHHH----HHHHTTCEEE
T ss_pred H--hcCCCHHHH---HHHHHhcccccccCHHHHHH----HHHHcCCCce
Confidence 0 011211110 11123335667789998884 5778899764
No 11
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.64 E-value=3.7e-15 Score=154.97 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=114.9
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-CC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~~ 790 (951)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++... +...+++++++|+.+++ +.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAK-----------GVSDNMQFIHCAAQDVASHL 133 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC------------CCGGGEEEEESCGGGTGGGC
T ss_pred CCCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCcceEEEEcCHHHhhhhc
Confidence 36799999999999999999986 79999999999999999876521 12258999999999987 66
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCc
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHK 869 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHk 869 (951)
+++||+|+|..+++|++ +.. .+.+++.++|||| .+++.+++............ .+..-.............|.
T Consensus 134 ~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 207 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVA-DPR-SVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAG----NFDYVQAGMPKKKKRTLSPD 207 (285)
T ss_dssp SSCEEEEEEESCGGGCS-CHH-HHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTT----CHHHHHTTCCCC----CCCS
T ss_pred CCCceEEEECchhhccc-CHH-HHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhc----CHHHHhhhccccccccCCCC
Confidence 78999999999999998 443 4456799999999 88888887543222111100 00000000001112334556
Q ss_pred cccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002222 870 FEWTRDQFNCWATELAARHNYSVE-FSGVG 898 (951)
Q Consensus 870 FEWTreEFqaWae~LA~r~GYsVE-f~GVG 898 (951)
..++++++..| +.+.||++. ..++.
T Consensus 208 ~~~~~~~l~~~----l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 208 YPRDPTQVYLW----LEEAGWQIMGKTGVR 233 (285)
T ss_dssp CCBCHHHHHHH----HHHTTCEEEEEEEES
T ss_pred CCCCHHHHHHH----HHHCCCceeeeeeEE
Confidence 67899999954 677899874 55554
No 12
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.64 E-value=2e-15 Score=153.77 Aligned_cols=157 Identities=15% Similarity=0.249 Sum_probs=117.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+..++++.++
T Consensus 12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~ 76 (239)
T 1xxl_A 12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQE------------KGVENVRFQQG 76 (239)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------HTCCSEEEEEC
T ss_pred hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCCeEEEec
Confidence 45566677788999999999999999999887 5999999999999999887642 13347999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccc
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 861 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~ 861 (951)
|+.++++.+++||+|++..+++|++ +.... .+++.++|||| .+++..++...+..+..+.. ...
T Consensus 77 d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-------------~~~ 141 (239)
T 1xxl_A 77 TAESLPFPDDSFDIITCRYAAHHFS-DVRKA-VREVARVLKQDGRFLLVDHYAPEDPVLDEFVN-------------HLN 141 (239)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH-------------HHH
T ss_pred ccccCCCCCCcEEEEEECCchhhcc-CHHHH-HHHHHHHcCCCcEEEEEEcCCCCChhHHHHHH-------------HHH
Confidence 9999998889999999999999998 44344 45799999999 67776665433332222100 011
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002222 862 KFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 862 ~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
..+...|...++.+++.+ ++.+.||.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~----ll~~aGf~~~ 169 (239)
T 1xxl_A 142 RLRDPSHVRESSLSEWQA----MFSANQLAYQ 169 (239)
T ss_dssp HHHCTTCCCCCBHHHHHH----HHHHTTEEEE
T ss_pred HhccccccCCCCHHHHHH----HHHHCCCcEE
Confidence 123445666788888884 5677899764
No 13
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.63 E-value=1.6e-15 Score=153.91 Aligned_cols=136 Identities=14% Similarity=0.203 Sum_probs=109.5
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--CC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL--p~ 789 (951)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++ ++++..+|+.+. ++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~--------------------~~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEG--------------------KFNVVKSDAIEYLKSL 97 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHT--------------------TSEEECSCHHHHHHTS
T ss_pred CCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHh--------------------hcceeeccHHHHhhhc
Confidence 56899999999999999999886 689999999999999864 267888998875 67
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCC
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 868 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DH 868 (951)
.+++||+|+|..+++|++++....+.+++.++|||| .+++.+|+......+... +..+.|
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-------------------~~~~~~ 158 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-------------------YIDPTH 158 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-------------------TTSTTC
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-------------------hcCccc
Confidence 788999999999999999776667778899999998 888999986533222211 233457
Q ss_pred ccccCHHHHHHHHHHHHHHcCcEEE
Q 002222 869 KFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 869 kFEWTreEFqaWae~LA~r~GYsVE 893 (951)
...++++++..| +.+.||.+.
T Consensus 159 ~~~~~~~~l~~~----l~~aGf~~~ 179 (240)
T 3dli_A 159 KKPVHPETLKFI----LEYLGFRDV 179 (240)
T ss_dssp CSCCCHHHHHHH----HHHHTCEEE
T ss_pred cccCCHHHHHHH----HHHCCCeEE
Confidence 777899999854 566799874
No 14
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.63 E-value=3.2e-15 Score=157.32 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred ChhHHHHHHHHHHHhh--cCCCCEEEEEcCccchhHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 694 PPLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 694 PPL~~QR~e~VldlL~--~~k~krVLDIGCGeG~ll~~LAk~g~-~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
-|.|.+..+.+..++. ..++.+|||||||+|.++..|++... +..+|+|||+|+.||+.|++++...
T Consensus 50 vP~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~---------- 119 (261)
T 4gek_A 50 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY---------- 119 (261)
T ss_dssp STTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS----------
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh----------
Confidence 3566665555555544 24678999999999999999987642 3369999999999999999887531
Q ss_pred CCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 771 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 771 r~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+...+|+++++|+.++++ ..||+|++..+++|+++++...+.++++++|||| .++++.+..
T Consensus 120 -~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 120 -KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp -CCSSCEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred -ccCceEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 234589999999998876 4699999999999999777777778899999999 777776643
No 15
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.63 E-value=3.5e-15 Score=147.14 Aligned_cols=165 Identities=12% Similarity=0.175 Sum_probs=115.7
Q ss_pred HHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 701 VEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 701 ~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
...+.+.+. ..++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++. +..++++
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~----------------~~~~~~~ 94 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRH----------------GLDNVEF 94 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGG----------------CCTTEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhc----------------CCCCeEE
Confidence 334555554 3456799999999999999999886 7999999999999999751 2347999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhh
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 858 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~ 858 (951)
.++|+.++ +..++||+|++..+++|++++....+.+++.++|+|| .+++.+++..... +..... ....+.
T Consensus 95 ~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~--~~~~~~----- 165 (218)
T 3ou2_A 95 RQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR-LEQQDD--SEPEVA----- 165 (218)
T ss_dssp EECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC---------------CE-----
T ss_pred EecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc-cchhhh--cccccc-----
Confidence 99999988 6778999999999999999766677778899999998 8888888763222 211110 000000
Q ss_pred ccccccCCCC----ccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002222 859 QSCKFRNHDH----KFEWTRDQFNCWATELAARHNYSVEFSGV 897 (951)
Q Consensus 859 ~~~~fRh~DH----kFEWTreEFqaWae~LA~r~GYsVEf~GV 897 (951)
....+....| ...++++++.+ ++.+.||+|+..-.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 166 VRRTLQDGRSFRIVKVFRSPAELTE----RLTALGWSCSVDEV 204 (218)
T ss_dssp EEEECTTSCEEEEECCCCCHHHHHH----HHHHTTEEEEEEEE
T ss_pred eeeecCCcchhhHhhcCCCHHHHHH----HHHHCCCEEEeeec
Confidence 0011112222 22469999985 56778999875444
No 16
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.63 E-value=3.7e-15 Score=147.89 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=115.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++ ++.+..+|+.+++ .+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~------------------~~~~~~~d~~~~~-~~ 100 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL------------------GRPVRTMLFHQLD-AI 100 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH------------------TSCCEECCGGGCC-CC
T ss_pred CCCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc------------------CCceEEeeeccCC-CC
Confidence 56799999999999999999986 69999999999999998763 3567789998888 77
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCcc
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 870 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkF 870 (951)
+.||+|+|..+++|++.+....+.+++.++|||| .+++.+++.... .......+..
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~~~ 157 (211)
T 3e23_A 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE-----------------------GRDKLARYYN 157 (211)
T ss_dssp SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC-----------------------EECTTSCEEC
T ss_pred CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc-----------------------cccccchhcc
Confidence 8999999999999999777777778899999999 777777654311 0011123345
Q ss_pred ccCHHHHHHHHHHHHHHcC-cEEEEEe--ecCCCCCCCCccceeeeeecCC
Q 002222 871 EWTRDQFNCWATELAARHN-YSVEFSG--VGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 871 EWTreEFqaWae~LA~r~G-YsVEf~G--VG~~p~ge~G~~TQIAVFrR~~ 918 (951)
.++++++.. ++.+.| |.+.-.- -+.... .....++.+-.++.
T Consensus 158 ~~~~~~~~~----~l~~aG~f~~~~~~~~~~~~~~--~~~~~wl~~~~~~~ 202 (211)
T 3e23_A 158 YPSEEWLRA----RYAEAGTWASVAVESSEGKGFD--QELAQFLHVSVRKP 202 (211)
T ss_dssp CCCHHHHHH----HHHHHCCCSEEEEEEEEEECTT--SCEEEEEEEEEECC
T ss_pred CCCHHHHHH----HHHhCCCcEEEEEEeccCCCCC--CCCceEEEEEEecC
Confidence 689999995 466779 9774322 222222 22345666666643
No 17
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.63 E-value=1.5e-15 Score=154.29 Aligned_cols=126 Identities=15% Similarity=0.239 Sum_probs=103.6
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
+..|.+....+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++....
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~----------- 82 (256)
T 1nkv_A 16 IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEEL----------- 82 (256)
T ss_dssp SSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHT-----------
T ss_pred ccCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 44567777788888888777889999999999999999987642 68999999999999998876421
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+...++++.++|+.++++ +++||+|+|..+++|++ +....+ +++.++|||| .+++.+|+
T Consensus 83 ~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l-~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 83 GVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAG-GFAGAE-ELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp TCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTS-SSHHHH-HHHTTSEEEEEEEEEEEEE
T ss_pred CCCcceEEEECChHhCCc-CCCCCEEEECCChHhcC-CHHHHH-HHHHHHcCCCeEEEEecCc
Confidence 122479999999999887 78999999999999998 433444 5799999999 77777765
No 18
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.62 E-value=3.2e-15 Score=151.38 Aligned_cols=149 Identities=10% Similarity=0.092 Sum_probs=114.3
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002222 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+++.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++. ...++++.++|
T Consensus 85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~~~~d 148 (254)
T 1xtp_A 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELA--------------GMPVGKFILAS 148 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTT--------------TSSEEEEEESC
T ss_pred HHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhc--------------cCCceEEEEcc
Confidence 3444444567899999999999999988775 2689999999999999988643 11579999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhcccc
Q 002222 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCK 862 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~ 862 (951)
+.++++..+.||+|++..+++|++++....+.+++.++|||| .+++.++...... ..
T Consensus 149 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------------------~~ 206 (254)
T 1xtp_A 149 METATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR----------------------FL 206 (254)
T ss_dssp GGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC----------------------EE
T ss_pred HHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc----------------------ce
Confidence 999988888999999999999998666667777899999999 7777776432110 01
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 863 FRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 863 fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
....++.+.++++++.+ ++.++||.+.-
T Consensus 207 ~~~~~~~~~~~~~~~~~----~l~~aGf~~~~ 234 (254)
T 1xtp_A 207 VDKEDSSLTRSDIHYKR----LFNESGVRVVK 234 (254)
T ss_dssp EETTTTEEEBCHHHHHH----HHHHHTCCEEE
T ss_pred ecccCCcccCCHHHHHH----HHHHCCCEEEE
Confidence 22345566789999985 45677998754
No 19
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.62 E-value=1.2e-14 Score=145.53 Aligned_cols=124 Identities=21% Similarity=0.316 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHhhcC--CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002222 695 PLSKQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~--k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
..+....+++.+.+... ++.+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|++++.. .
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~------------~ 82 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRS------------Q 82 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHH------------T
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhh------------c
Confidence 45566667777777654 67899999999999999999886 6899999999999999887642 1
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEcc-ccccCch-hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcie-VLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+ .++++.++|+.++++. +.||+|++.. +++|++. +....+.+++.++|+|| .+++.+++..
T Consensus 83 ~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (246)
T 1y8c_A 83 G-LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp T-CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred C-CCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence 1 2789999999998876 8899999998 9999942 34456667899999998 8888888753
No 20
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.62 E-value=1.8e-15 Score=151.82 Aligned_cols=122 Identities=9% Similarity=0.024 Sum_probs=92.0
Q ss_pred hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC-CCCCCccEEEEEccccc
Q 002222 708 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV-PCTDVKSAVLFDGSITV 786 (951)
Q Consensus 708 L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~-Pr~~~~nVtf~qGDa~d 786 (951)
+...++.+|||+|||+|.++..|++.+ .+|+|||+|+.|++.|+++........ .... ......+++++++|+.+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHIT-SQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEE-EETTEEEEECSSSEEEEECCSS
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccc-cccccccccCCccEEEECcccc
Confidence 344567899999999999999999987 799999999999999987642100000 0000 00013479999999999
Q ss_pred cCCCC-CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 787 FDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 787 Lp~~d-~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+++.+ ++||+|++..+++|++++....+.+++.++|||| .+++.+.+
T Consensus 94 l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 98765 7899999999999999777677778899999999 54555543
No 21
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.60 E-value=1.9e-14 Score=146.19 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=110.8
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++... +..++++.++|+.++++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~------------~~~~~~~~~~d~~~~~~~~ 144 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEE------------GKRVRNYFCCGLQDFTPEP 144 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGG------------GGGEEEEEECCGGGCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhc------------CCceEEEEEcChhhcCCCC
Confidence 478999999999999999988762 69999999999999998875421 1347999999999988877
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCcc
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 870 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkF 870 (951)
+.||+|++..+++|++++....+.+++.++|+|| .+++.++.... .. .+...++.+
T Consensus 145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~-------------------~~~~~~~~~ 201 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE----GV-------------------ILDDVDSSV 201 (241)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS----SE-------------------EEETTTTEE
T ss_pred CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC----cc-------------------eecccCCcc
Confidence 8999999999999999766667777899999999 77777775432 00 011223444
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 871 EWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 871 EWTreEFqaWae~LA~r~GYsVEf 894 (951)
.++.+++.+ ++.+.||.+.-
T Consensus 202 ~~~~~~~~~----~l~~aGf~~~~ 221 (241)
T 2ex4_A 202 CRDLDVVRR----IICSAGLSLLA 221 (241)
T ss_dssp EEBHHHHHH----HHHHTTCCEEE
T ss_pred cCCHHHHHH----HHHHcCCeEEE
Confidence 568888884 56678998754
No 22
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.60 E-value=9.8e-15 Score=145.02 Aligned_cols=165 Identities=13% Similarity=0.072 Sum_probs=122.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+...++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.|++++.. .+..++++.+
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~ 94 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK------------LGLKNVEVLK 94 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH------------HTCTTEEEEE
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEe
Confidence 4566666667788999999999999999998753447999999999999999987653 1234799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhcc
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 860 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~ 860 (951)
+|+.++++.+++||+|++..+++|++ +.. .+.+++.++|+|| .+++.+++....
T Consensus 95 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~LkpgG~l~i~~~~~~~~----------------------- 149 (219)
T 3dh0_A 95 SEENKIPLPDNTVDFIFMAFTFHELS-EPL-KFLEELKRVAKPFAYLAIIDWKKEER----------------------- 149 (219)
T ss_dssp CBTTBCSSCSSCEEEEEEESCGGGCS-SHH-HHHHHHHHHEEEEEEEEEEEECSSCC-----------------------
T ss_pred cccccCCCCCCCeeEEEeehhhhhcC-CHH-HHHHHHHHHhCCCeEEEEEEeccccc-----------------------
Confidence 99999988888999999999999998 443 4446799999999 777776553211
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecCCCCCCCCccceeeeeecC
Q 002222 861 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGGSGDREPGFASQIAVFRSR 917 (951)
Q Consensus 861 ~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG~~p~ge~G~~TQIAVFrR~ 917 (951)
.....+...++.+++.. ++.+.||++. ...++. .....+++|.
T Consensus 150 --~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~~~--------~~~~~~~~k~ 193 (219)
T 3dh0_A 150 --DKGPPPEEVYSEWEVGL----ILEDAGIRVGRVVEVGK--------YCFGVYAMIV 193 (219)
T ss_dssp --SSSCCGGGSCCHHHHHH----HHHHTTCEEEEEEEETT--------TEEEEEEECC
T ss_pred --ccCCchhcccCHHHHHH----HHHHCCCEEEEEEeeCC--------ceEEEEEEec
Confidence 11122334578888884 5677899864 444432 2355566664
No 23
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.59 E-value=5.5e-15 Score=145.15 Aligned_cols=128 Identities=16% Similarity=0.087 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
++.|++....+.+.+.+...+. +|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~----------- 89 (219)
T 3dlc_A 24 LFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADA----------- 89 (219)
T ss_dssp TTTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHT-----------
T ss_pred hhccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhc-----------
Confidence 4556777777777777665444 99999999999999999873 279999999999999999876531
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+...++++.++|+.++++.+++||+|++..+++|++ +... +.+++.++|+|| .+++.++...
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-~~~~-~l~~~~~~L~pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 90 NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWE-DVAT-AFREIYRILKSGGKTYIGGGFGN 152 (219)
T ss_dssp TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCS-CHHH-HHHHHHHHEEEEEEEEEEECCSS
T ss_pred cccCceEEEEcCHHHCCCCcccccEEEECchHhhcc-CHHH-HHHHHHHhCCCCCEEEEEeccCc
Confidence 223479999999999998889999999999999996 4434 445799999999 7777766544
No 24
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.59 E-value=1.7e-14 Score=148.24 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
..+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... +...++++
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~~~~ 115 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAA-----------GLANRVTF 115 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhc-----------CCCcceEE
Confidence 345566666666788999999999999999987542 79999999999999998876531 22347999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch--hHHHHhhccCccCCCCchhh
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY--NAILQKSSSTIQEDDPDEKT 856 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf--N~lf~~L~~~~~~eYPde~~ 856 (951)
.++|+.++++.+++||+|++.++++|+++ .. .+.+++.++|||| .+++.+++... .........
T Consensus 116 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~----------- 182 (273)
T 3bus_A 116 SYADAMDLPFEDASFDAVWALESLHHMPD-RG-RALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVD----------- 182 (273)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCTTTSSC-HH-HHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHH-----------
T ss_pred EECccccCCCCCCCccEEEEechhhhCCC-HH-HHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHH-----------
Confidence 99999999988899999999999999984 43 4446799999999 77777765321 111000000
Q ss_pred hhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002222 857 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 899 (951)
Q Consensus 857 ~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG~ 899 (951)
... ....|...++.+++.+ ++.+.||.+. ...++.
T Consensus 183 --~~~--~~~~~~~~~~~~~~~~----~l~~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 183 --AFR--AGGGVLSLGGIDEYES----DVRQAELVVTSTVDISA 218 (273)
T ss_dssp --HHH--HHHTCCCCCCHHHHHH----HHHHTTCEEEEEEECHH
T ss_pred --HHH--hhcCccCCCCHHHHHH----HHHHcCCeEEEEEECcH
Confidence 000 1112344688888884 4667899874 444443
No 25
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.58 E-value=2.6e-14 Score=145.63 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ..++++.
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~ 95 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT---------------SPVVCYE 95 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC---------------CTTEEEE
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc---------------cCCeEEE
Confidence 34456666666889999999999999999999873 499999999999999987631 3489999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++|+.++++.+++||+|++..+++|++ +.... .+++.++|||| .+++++++.
T Consensus 96 ~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 96 QKAIEDIAIEPDAYNVVLSSLALHYIA-SFDDI-CKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp ECCGGGCCCCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEECH
T ss_pred EcchhhCCCCCCCeEEEEEchhhhhhh-hHHHH-HHHHHHHcCCCcEEEEEeCCC
Confidence 999999998889999999999999997 44344 45799999999 888887764
No 26
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.58 E-value=1.5e-14 Score=140.73 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=95.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++... +..++++.++
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~~~~~~~~~~ 87 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIE------------NLDNLHTRVV 87 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH------------TCTTEEEEEC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhC------------CCCCcEEEEc
Confidence 45566666678899999999999999999886 69999999999999998876421 2347999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.++++ .+.||+|++..+++|++++....+.+++.++|+|| .+++.++.
T Consensus 88 d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 88 DLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp CGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred chhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 9999887 78999999999999998766667778899999998 55555443
No 27
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.58 E-value=1.2e-14 Score=151.80 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=99.2
Q ss_pred HHHHHHHHHHh----hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 698 KQRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 698 ~QR~e~VldlL----~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
....+.+.+.+ ...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... +.
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~ 130 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQA-----------GL 130 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHH-----------TC
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc-----------CC
Confidence 34455666776 556778999999999999999998732 69999999999999998876431 12
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
..++++.++|+.++++++++||+|++.++++|+++ . ..+.+++.++|||| .+++.+|+.
T Consensus 131 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~-~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 131 ADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD-K-LKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp TTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC-H-HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CcceEEEEcCcccCCCCCCCEeEEEecchhhhcCC-H-HHHHHHHHHHcCCCeEEEEEEecc
Confidence 34799999999999988899999999999999994 4 34456799999999 788887753
No 28
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.57 E-value=3.6e-14 Score=147.39 Aligned_cols=121 Identities=17% Similarity=0.303 Sum_probs=96.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
..+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++.. .+...++++
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~-----------~~~~~~~~~ 118 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVAN-----------SENLRSKRV 118 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-----------CCCCSCEEE
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCCCeEE
Confidence 344556666666788999999999999999984432 5999999999999999987642 122347999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
.++|+.+++ ++||+|++.++++|++++....+.+++.++|||| .+++.+++...
T Consensus 119 ~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 173 (287)
T 1kpg_A 119 LLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH 173 (287)
T ss_dssp EESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred EECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 999998776 7899999999999997544455667799999999 88888887543
No 29
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.57 E-value=9.5e-15 Score=150.54 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=101.8
Q ss_pred cCCChhHHHHHHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC
Q 002222 691 LFSPPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 769 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~ 769 (951)
....|........+++.+. ..++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...
T Consensus 24 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~--------- 92 (267)
T 3kkz_A 24 ERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQS--------- 92 (267)
T ss_dssp SCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHT---------
T ss_pred cccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHc---------
Confidence 3344555555666666665 4567899999999999999999985 269999999999999999876531
Q ss_pred CCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 770 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 770 Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+...++++.++|+.++++..++||+|+|..+++|++ . ..+.+++.++|||| .+++.+++
T Consensus 93 --~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~-~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 93 --GLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIG--F-ERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp --TCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGTC--H-HHHHHHHGGGEEEEEEEEEEEEE
T ss_pred --CCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceecC--H-HHHHHHHHHHcCCCCEEEEEEee
Confidence 223469999999999988888999999999999994 2 34456799999999 78888775
No 30
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.56 E-value=2.2e-14 Score=150.17 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=96.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC------C
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC------T 772 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr------~ 772 (951)
...+++...+...++.+|||+|||+|..+..|++.+ .+|+|||+|+.|++.|+++...... ........ .
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 130 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYT-EEPLAEIAGAKVFKS 130 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEE-EEECTTSTTCEEEEE
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccc-ccccccccccccccc
Confidence 334444444333467899999999999999999998 7999999999999999765320000 00000000 0
Q ss_pred CCccEEEEEccccccCCCC-CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 773 DVKSAVLFDGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d-~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...+++++++|+.++++.+ ++||+|++..+++|++++....+.+++.++|||| .+++.+.+
T Consensus 131 ~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 131 SSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp TTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 1257999999999998764 8999999999999999777777778899999999 55555554
No 31
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.56 E-value=2e-14 Score=142.86 Aligned_cols=122 Identities=16% Similarity=0.291 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHH-HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 695 PLSKQRVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 695 PL~~QR~e~Vld-lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
+....++..++. .+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++. .
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~--------------~ 95 (216)
T 3ofk_A 33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTK--------------R 95 (216)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTT--------------T
T ss_pred HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcc--------------c
Confidence 334435544444 5556677899999999999999999987 799999999999999988653 1
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCch-hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
..++++.++|+.+++ ..++||+|+|..+++|+++ +....+.+++.++|||| .+++++|+.
T Consensus 96 ~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 96 WSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 238999999999988 5789999999999999995 44455667899999999 888888864
No 32
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.56 E-value=9.3e-15 Score=148.58 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=100.0
Q ss_pred CChhHHHHHHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 693 SPPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
..|........+++.+. ..++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++...
T Consensus 26 ~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~----------- 92 (257)
T 3f4k_A 26 QGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKA----------- 92 (257)
T ss_dssp SSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHT-----------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHc-----------
Confidence 33455555566666664 34667999999999999999999873 49999999999999999876531
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+...++++.++|+.++++.+++||+|++..+++|++ . ..+.+++.++|||| .+++.+++
T Consensus 93 ~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~-~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 93 NCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG--F-ERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp TCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCCC--H-HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CCCCceEEEECChhhCCCCCCCEEEEEecChHhhcC--H-HHHHHHHHHHcCCCcEEEEEEee
Confidence 223359999999999998889999999999999994 2 34456799999999 88888775
No 33
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.56 E-value=3.2e-14 Score=142.87 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=95.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ..++++.+
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~ 95 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGP---------------DTGITYER 95 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSC---------------SSSEEEEE
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcc---------------cCCceEEE
Confidence 3566677767789999999999999999998862 399999999999999987531 13799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+|+.++++..++||+|++..+++|++ +.. .+.+++.++|+|| .+++++|+..
T Consensus 96 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~ 148 (243)
T 3bkw_A 96 ADLDKLHLPQDSFDLAYSSLALHYVE-DVA-RLFRTVHQALSPGGHFVFSTEHPI 148 (243)
T ss_dssp CCGGGCCCCTTCEEEEEEESCGGGCS-CHH-HHHHHHHHHEEEEEEEEEEEECHH
T ss_pred cChhhccCCCCCceEEEEeccccccc-hHH-HHHHHHHHhcCcCcEEEEEeCCcc
Confidence 99999888788999999999999998 443 4445799999999 8888888743
No 34
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=159.49 Aligned_cols=186 Identities=18% Similarity=0.325 Sum_probs=115.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccc--------------------------
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-------------------------- 765 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~-------------------------- 765 (951)
++++|||||||+|.++..|++.. +..+|+|||+|+.|++.|++++........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 67899999999999999999874 237999999999999999886542210000
Q ss_pred --------------------ccCCCCCCCccEEEEEccccccC-----CCCCCccEEEEccccccC----chhHHHHHHH
Q 002222 766 --------------------DAAVPCTDVKSAVLFDGSITVFD-----SRLHGFDIGTCLEVIEHM----EEDEASQFGN 816 (951)
Q Consensus 766 --------------------~~l~Pr~~~~nVtf~qGDa~dLp-----~~d~sFDlVVcieVLEHL----~dD~l~~L~e 816 (951)
....+...+.+|+|.++|+...+ +...+||+|+|..+++|+ .++....+.+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 00000011258999999998654 467899999999999998 4456667778
Q ss_pred HHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EE
Q 002222 817 IVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EF 894 (951)
Q Consensus 817 eL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsV-Ef 894 (951)
++.++|+|| .+++.+.+ +..+...- .. .......-+...|.+++|..|+.. ...||+. +.
T Consensus 205 ~~~~~LkpGG~lil~~~~--~~~y~~~~------~~--------~~~~~~~~~~~~~~p~~~~~~L~~--~~~GF~~~~~ 266 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQP--WSSYGKRK------TL--------TETIYKNYYRIQLKPEQFSSYLTS--PDVGFSSYEL 266 (292)
T ss_dssp HHHHHEEEEEEEEEECCC--HHHHHTTT------TS--------CHHHHHHHHHCCCCGGGHHHHHTS--TTTCCCEEEE
T ss_pred HHHHHhCCCcEEEEecCC--chhhhhhh------cc--------cHHHHhhhhcEEEcHHHHHHHHHh--cCCCceEEEE
Confidence 899999999 66665544 22222110 00 000111122345778999976431 1279954 55
Q ss_pred EeecCCCCCCCCccceeeeeecCC
Q 002222 895 SGVGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 895 ~GVG~~p~ge~G~~TQIAVFrR~~ 918 (951)
.+.. .....||..++-+|+|+.
T Consensus 267 ~~~~--~~~~~g~~r~i~~~~k~~ 288 (292)
T 3g07_A 267 VATP--HNTSKGFQRPVYLFHKAR 288 (292)
T ss_dssp C-------------CCCEEEECCC
T ss_pred eccC--CCCCCCccceEEEEEcCC
Confidence 4432 223579999999999964
No 35
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.56 E-value=4.9e-14 Score=139.42 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=115.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+. .++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++. .++.++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~-------------------~~~~~~ 80 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKL-------------------DHVVLG 80 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTS-------------------SEEEES
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-------------------CcEEEc
Confidence 3445544 567899999999999999999885 79999999999999986531 267888
Q ss_pred cccc--cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhc
Q 002222 783 SITV--FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 859 (951)
Q Consensus 783 Da~d--Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~ 859 (951)
|+.+ .++.++.||+|++..+++|+++. . .+.+++.++|+|| .+++++|+......+..+.. ..|...
T Consensus 81 d~~~~~~~~~~~~fD~v~~~~~l~~~~~~-~-~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~---~~~~~~----- 150 (230)
T 3cc8_A 81 DIETMDMPYEEEQFDCVIFGDVLEHLFDP-W-AVIEKVKPYIKQNGVILASIPNVSHISVLAPLLA---GNWTYT----- 150 (230)
T ss_dssp CTTTCCCCSCTTCEEEEEEESCGGGSSCH-H-HHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHT---TCCCCB-----
T ss_pred chhhcCCCCCCCccCEEEECChhhhcCCH-H-HHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhc---CCceec-----
Confidence 9876 55567899999999999999844 3 4456799999998 88899999765443332211 112110
Q ss_pred cccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002222 860 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 899 (951)
Q Consensus 860 ~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG~ 899 (951)
........|...++++++.+ ++.++||++. ...+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 151 EYGLLDKTHIRFFTFNEMLR----MFLKAGYSISKVDRVYV 187 (230)
T ss_dssp SSSTTBTTCCCCCCHHHHHH----HHHHTTEEEEEEEEEEC
T ss_pred cCCCCCcceEEEecHHHHHH----HHHHcCCeEEEEEeccc
Confidence 11223455667799999984 5677899874 444444
No 36
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.56 E-value=1.4e-13 Score=139.08 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=108.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .....++++.++|+.+++. .
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~-~ 130 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGS-----------SPKAEYFSFVKEDVFTWRP-T 130 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTT-----------SGGGGGEEEECCCTTTCCC-S
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhc-----------cCCCcceEEEECchhcCCC-C
Confidence 44699999999999999999876 7999999999999999987642 1233579999999998774 4
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCcc
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 870 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkF 870 (951)
..||+|++..+++|++++....+.+++.++|||| .+++...+.... ...+.+
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------------------------~~~~~~ 183 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH---------------------------VGGPPY 183 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC---------------------------CSCSSC
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc---------------------------CCCCCc
Confidence 5899999999999999777777778899999999 666654432200 011224
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEEE-EeecCC
Q 002222 871 EWTRDQFNCWATELAARHNYSVEF-SGVGGS 900 (951)
Q Consensus 871 EWTreEFqaWae~LA~r~GYsVEf-~GVG~~ 900 (951)
.++++++.. ++.++||.+.. ..+...
T Consensus 184 ~~~~~~~~~----~l~~~Gf~~~~~~~~~~~ 210 (235)
T 3lcc_A 184 KVDVSTFEE----VLVPIGFKAVSVEENPHA 210 (235)
T ss_dssp CCCHHHHHH----HHGGGTEEEEEEEECTTC
T ss_pred cCCHHHHHH----HHHHcCCeEEEEEecCCc
Confidence 478888884 56778998754 444433
No 37
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.56 E-value=3.6e-14 Score=144.15 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=107.7
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++. ....++++.++|+.++++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~~~~~~d~~~~~~ 100 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIA-------------GVDRKVQVVQADARAIPL 100 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTT-------------TSCTTEEEEESCTTSCCS
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhh-------------ccCCceEEEEcccccCCC
Confidence 3467899999999999999999886 799999999999999987641 234589999999999988
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc------hhHHHHhhccCccCCCCchhhhhcccc
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE------YNAILQKSSSTIQEDDPDEKTQLQSCK 862 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE------fN~lf~~L~~~~~~eYPde~~~~~~~~ 862 (951)
.+++||+|++..+++|++ +.. .+.+++.++|||| .+++..++.+ +...+..+. ...+
T Consensus 101 ~~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 164 (263)
T 2yqz_A 101 PDESVHGVIVVHLWHLVP-DWP-KVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFA--------------AEEG 164 (263)
T ss_dssp CTTCEEEEEEESCGGGCT-THH-HHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHH--------------HHHT
T ss_pred CCCCeeEEEECCchhhcC-CHH-HHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHH--------------HHhC
Confidence 888999999999999998 443 4445799999998 5555533321 111222110 0111
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 863 FRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 863 fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
+....|...++.+++.+ ++.+.||.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~ 192 (263)
T 2yqz_A 165 FPVERGLHAKRLKEVEE----ALRRLGLKPRT 192 (263)
T ss_dssp CCCCCCHHHHHHHHHHH----HHHHTTCCCEE
T ss_pred CCcccccccCCHHHHHH----HHHHcCCCcce
Confidence 11233556678888875 45678987643
No 38
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.55 E-value=1.4e-14 Score=153.47 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002222 695 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 695 PL~~QR~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~-g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
.+.....+.+.+.+. ..++.+|||||||+|.++..+++. + .+|+|+|+|+.+++.|++++... +
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~ 164 (312)
T 3vc1_A 99 RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRAREL-----------R 164 (312)
T ss_dssp HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHT-----------T
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc-----------C
Confidence 344555566777776 556789999999999999999987 5 79999999999999999876531 2
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
...++++.++|+.++++.++.||+|++.++++|++ ...+.+++.++|||| .+++.+++.
T Consensus 165 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 165 IDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp CTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCceEEEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccc
Confidence 22479999999999988889999999999999995 345556799999999 777777654
No 39
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.55 E-value=1.2e-13 Score=135.86 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=115.1
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCc
Q 002222 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 794 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sF 794 (951)
+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++... + .++++.++|+.++++.++.|
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~-~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEK------------G-VKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHH------------T-CCEEEECCBTTTBSCCTTTC
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhc------------C-CceEEEEcChhhcCCCcCCc
Confidence 99999999999999999986 69999999999999998876421 1 27999999999998878899
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCccccC
Q 002222 795 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWT 873 (951)
Q Consensus 795 DlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWT 873 (951)
|+|++. +.|+..+....+.+++.++|+|| .+++.+++.+...+ . .....++.+.++
T Consensus 96 D~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~ 152 (202)
T 2kw5_A 96 EGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY-N--------------------TGGPKDLDLLPK 152 (202)
T ss_dssp SEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG-T--------------------SCCSSSGGGCCC
T ss_pred cEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC-C--------------------CCCCCcceeecC
Confidence 999995 45776566667777899999999 88888887543211 0 011234567799
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeecC--C--CCCCCCccceeeeeec
Q 002222 874 RDQFNCWATELAARHNYSVEFSGVGG--S--GDREPGFASQIAVFRS 916 (951)
Q Consensus 874 reEFqaWae~LA~r~GYsVEf~GVG~--~--p~ge~G~~TQIAVFrR 916 (951)
++++.++++ ||.+....... . +.+..|....+....+
T Consensus 153 ~~~l~~~l~------Gf~v~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 193 (202)
T 2kw5_A 153 LETLQSELP------SLNWLIANNLERNLDEGAYHQGKAALIQLLGQ 193 (202)
T ss_dssp HHHHHHHCS------SSCEEEEEEEEEECSCSSSSCCEEEEEEEEEC
T ss_pred HHHHHHHhc------CceEEEEEEEEeecCCCCCcccHHHHHHHHHH
Confidence 999997643 88875432222 1 1223466666665555
No 40
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.55 E-value=2.5e-14 Score=150.28 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=97.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+.. .+.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++..... ....+++++
T Consensus 72 ~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~---------~~~~~v~~~ 138 (299)
T 3g2m_A 72 AREFATRTGP-VSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPA---------DVRDRCTLV 138 (299)
T ss_dssp HHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCH---------HHHTTEEEE
T ss_pred HHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhccc---------ccccceEEE
Confidence 3344555543 34599999999999999999986 7899999999999999987642100 001479999
Q ss_pred EccccccCCCCCCccEEEEc-cccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 781 DGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVci-eVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
++|+.++++ .+.||+|+|. .+++|++++....+.+++.++|||| .+++.+++.+.
T Consensus 139 ~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 139 QGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp ECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred eCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 999999887 6899999875 7788888766777778899999999 89999998754
No 41
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.54 E-value=3e-14 Score=146.26 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 696 LSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 696 L~~QR~e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
.+....+.+.+.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~---------------- 92 (263)
T 3pfg_A 32 DYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN---------------- 92 (263)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC----------------
T ss_pred CHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC----------------
Confidence 334444555555442 255899999999999999999987 68999999999999998753
Q ss_pred CccEEEEEccccccCCCCCCccEEEEcc-ccccCch-hHHHHHHHHHHHccCCC-EEEEEe
Q 002222 774 VKSAVLFDGSITVFDSRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcie-VLEHL~d-D~l~~L~eeL~RvLKPG-vLIIST 831 (951)
.+++++++|+.++++ .++||+|+|.. +++|++. +....+.+++.++|||| .+++.+
T Consensus 93 -~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 93 -PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp -TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 268999999999887 78999999998 9999963 34556667899999999 666653
No 42
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.54 E-value=4.3e-14 Score=139.91 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=100.4
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||||||+|.++..+ + ..+|+|+|+|+.+++.|+++. .++++.++|+.++++.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~--~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~ 93 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---P--YPQKVGVEPSEAMLAVGRRRA-----------------PEATWVRAWGEALPFPG 93 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---C--CSEEEEECCCHHHHHHHHHHC-----------------TTSEEECCCTTSCCSCS
T ss_pred CCCeEEEECCCCCHhHHhC---C--CCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcccccCCCCC
Confidence 6789999999999999877 3 138999999999999998753 36889999999998888
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh--HHHHhhccCccCCCCchhhhhccccccCCCC
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN--AILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 868 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN--~lf~~L~~~~~~eYPde~~~~~~~~fRh~DH 868 (951)
++||+|++..+++|++ +... +.+++.++|||| .+++++|+.+.. ..+... .........|
T Consensus 94 ~~fD~v~~~~~l~~~~-~~~~-~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 156 (211)
T 2gs9_A 94 ESFDVVLLFTTLEFVE-DVER-VLLEARRVLRPGGALVVGVLEALSPWAALYRRL---------------GEKGVLPWAQ 156 (211)
T ss_dssp SCEEEEEEESCTTTCS-CHHH-HHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHH---------------HHTTCTTGGG
T ss_pred CcEEEEEEcChhhhcC-CHHH-HHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHH---------------hhccCccccc
Confidence 8999999999999998 4434 445799999999 888899886421 111111 0001111235
Q ss_pred ccccCHHHHHHHHH
Q 002222 869 KFEWTRDQFNCWAT 882 (951)
Q Consensus 869 kFEWTreEFqaWae 882 (951)
...++++++.+|++
T Consensus 157 ~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 157 ARFLAREDLKALLG 170 (211)
T ss_dssp CCCCCHHHHHHHHC
T ss_pred cccCCHHHHHHHhc
Confidence 56789999998765
No 43
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.54 E-value=1.4e-13 Score=144.89 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=96.6
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
.++.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... +...++++
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~ 126 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEV-----------DSPRRKEV 126 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHS-----------CCSSCEEE
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEE
Confidence 344556666666788999999999999999998732 78999999999999999876531 22347999
Q ss_pred EEccccccCCCCCCccEEEEccccccCch-------hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~d-------D~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.++|+.++ +++||+|++..+++|+++ +....+.+++.++|||| .+++.++...
T Consensus 127 ~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 127 RIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 99999877 689999999999999953 44556677899999999 7777777544
No 44
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=1.6e-13 Score=132.01 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++ .++.+.++|+.++++.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~ 104 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDF-----------------PEARWVVGDLSVDQIS 104 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTTSCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhC-----------------CCCcEEEcccccCCCC
Confidence 367899999999999999999886 69999999999999998753 2588999999998877
Q ss_pred CCCccEEEEc-cccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 791 LHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVci-eVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+.||+|++. .+++|+..+....+.+.+.++|+|| .+++.+++
T Consensus 105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 7899999998 7999998776677778899999998 77776654
No 45
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.54 E-value=1.5e-14 Score=150.44 Aligned_cols=128 Identities=23% Similarity=0.340 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
..-.+++.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++...... .....++
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~ 111 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRK--------EPAFDKW 111 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTT--------SHHHHTC
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhccc--------cccccee
Confidence 3344667777777788999999999999999999987 6999999999999999876532110 1123478
Q ss_pred EEEEccccccC---CCCCCccEEEEc-cccccCch-----hHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 778 VLFDGSITVFD---SRLHGFDIGTCL-EVIEHMEE-----DEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 778 tf~qGDa~dLp---~~d~sFDlVVci-eVLEHL~d-----D~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
.+..+|+.+++ +.+++||+|+|. .+++|+++ +....+.+++.++|||| .+++++||.++
T Consensus 112 ~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (293)
T 3thr_A 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDY 180 (293)
T ss_dssp EEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred eEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHH
Confidence 99999999887 778899999999 89999996 45566777899999999 88999998654
No 46
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.53 E-value=1.6e-14 Score=151.90 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|.|....+-++++.+... ...+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++
T Consensus 21 ~Rp~yp~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~---------------- 79 (257)
T 4hg2_A 21 FRPRYPRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR---------------- 79 (257)
T ss_dssp CCCCCCHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC----------------
T ss_pred HCCCcHHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh----------------
Confidence 334333445556665543 45699999999999999999988 799999999999987742
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
..++++.+++++++++++++||+|+|..++||++.+ .+.+++.|+|||| .+++.+.+
T Consensus 80 --~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~---~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 80 --HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD---RFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp --CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---HHHHHHHHHEEEEEEEEEEEEC
T ss_pred --cCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---HHHHHHHHHcCCCCEEEEEECC
Confidence 247999999999999999999999999999999743 3446799999999 55555543
No 47
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.52 E-value=2.9e-14 Score=136.57 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=112.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++. .++++.++
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------------~~v~~~~~ 67 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF-----------------DSVITLSD 67 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC-----------------TTSEEESS
T ss_pred HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC-----------------CCcEEEeC
Confidence 44555566678899999999999999999987 59999999999999998751 37889998
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccc
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 861 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~ 861 (951)
| .++.++.||+|++..+++|++ +.. .+.+++.++|||| .+++.+++....
T Consensus 68 d---~~~~~~~~D~v~~~~~l~~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~------------------------ 118 (170)
T 3i9f_A 68 P---KEIPDNSVDFILFANSFHDMD-DKQ-HVISEVKRILKDDGRVIIIDWRKENT------------------------ 118 (170)
T ss_dssp G---GGSCTTCEEEEEEESCSTTCS-CHH-HHHHHHHHHEEEEEEEEEEEECSSCC------------------------
T ss_pred C---CCCCCCceEEEEEccchhccc-CHH-HHHHHHHHhcCCCCEEEEEEcCcccc------------------------
Confidence 8 666778999999999999997 443 4456799999998 777776654211
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHHcCcEEEE-EeecCCCCCCCCccceeeeeecCC
Q 002222 862 KFRNHDHKFEWTRDQFNCWATELAARHNYSVEF-SGVGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 862 ~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf-~GVG~~p~ge~G~~TQIAVFrR~~ 918 (951)
...+.+...|+++++.+|++ ||.+.- ...+. .....+|+++.
T Consensus 119 -~~~~~~~~~~~~~~~~~~l~------Gf~~~~~~~~~~--------~~~~l~~~~~~ 161 (170)
T 3i9f_A 119 -GIGPPLSIRMDEKDYMGWFS------NFVVEKRFNPTP--------YHFGLVLKRKT 161 (170)
T ss_dssp -SSSSCGGGCCCHHHHHHHTT------TEEEEEEECSST--------TEEEEEEEECC
T ss_pred -ccCchHhhhcCHHHHHHHHh------CcEEEEccCCCC--------ceEEEEEecCC
Confidence 01123344589999997643 998743 33321 23566777643
No 48
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.52 E-value=1.5e-13 Score=145.34 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=97.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~-g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
..+.+.+.+...++.+|||||||+|.++..+++. + .+|+|+|+|+.+++.|++++... +...+++
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~ 143 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASI-----------DTNRSRQ 143 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTS-----------CCSSCEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceE
Confidence 4445555555567889999999999999999987 5 69999999999999999876421 1224699
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+.++|+.+++ ++||+|++.++++|++++....+.+++.++|||| .+++.+++...
T Consensus 144 ~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 144 VLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp EEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred EEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9999998875 7899999999999997545556667899999999 88888887543
No 49
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.52 E-value=4.3e-14 Score=141.59 Aligned_cols=116 Identities=17% Similarity=0.304 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 698 KQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 698 ~QR~e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
....+.+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++ .
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----------------~ 83 (239)
T 3bxo_A 24 AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----------------P 83 (239)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----------------T
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----------------C
Confidence 3333444444432 467899999999999999999887 58999999999999998752 2
Q ss_pred cEEEEEccccccCCCCCCccEEEEc-cccccCch-hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 776 SAVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVci-eVLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++++.++|+.+++. .+.||+|+|. .+++|+.. +....+.+++.++|+|| .+++.+++.
T Consensus 84 ~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 84 DATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp TCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 68999999998876 6789999965 59999963 44556667899999999 777776654
No 50
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.52 E-value=4.6e-14 Score=143.36 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=110.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|+++. .++++.++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~ 85 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL-----------------PNTNFGKA 85 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS-----------------TTSEEEEC
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------------CCcEEEEC
Confidence 45555555677899999999999999998873 2378999999999999998751 36899999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhH---HHHhhccCccCCCCchhhhh
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA---ILQKSSSTIQEDDPDEKTQL 858 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~---lf~~L~~~~~~eYPde~~~~ 858 (951)
|+.+++ .+++||+|++..+++|++ +.... .+++.++|||| .+++.+|+..... .+..+.. ...|
T Consensus 86 d~~~~~-~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~------- 153 (259)
T 2p35_A 86 DLATWK-PAQKADLLYANAVFQWVP-DHLAV-LSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETAD--GGPW------- 153 (259)
T ss_dssp CTTTCC-CSSCEEEEEEESCGGGST-THHHH-HHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHH--HSTT-------
T ss_pred ChhhcC-ccCCcCEEEEeCchhhCC-CHHHH-HHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhc--Ccch-------
Confidence 999988 678999999999999997 44344 45799999999 8888888753221 1221110 0011
Q ss_pred cccc-ccC--CCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 859 QSCK-FRN--HDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 859 ~~~~-fRh--~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
.. +.. ..|...++.+++.+ ++.+.||.|+.
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~----~l~~aGf~v~~ 186 (259)
T 2p35_A 154 --KDAFSGGGLRRKPLPPPSDYFN----ALSPKSSRVDV 186 (259)
T ss_dssp --GGGC-------CCCCCHHHHHH----HHGGGEEEEEE
T ss_pred --HHHhccccccccCCCCHHHHHH----HHHhcCCceEE
Confidence 11 111 23455688988885 46678997653
No 51
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.52 E-value=1.4e-13 Score=136.93 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=113.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..... ......++++..+|+.++++..
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~ 99 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGL-------NQKTGGKAEFKVENASSLSFHD 99 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSC-------CSSSSCEEEEEECCTTSCCSCT
T ss_pred CCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCC-------ccccCcceEEEEecccccCCCC
Confidence 67899999999999999999986 7999999999999999887532100 0011237899999999998888
Q ss_pred CCccEEEEccccccCch-hHHHHHHHHHHHccCCC-EEEEEecCCchhH-HHHhhccCccCCCCchhhhhcc-----ccc
Q 002222 792 HGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYEYNA-ILQKSSSTIQEDDPDEKTQLQS-----CKF 863 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPNsEfN~-lf~~L~~~~~~eYPde~~~~~~-----~~f 863 (951)
+.||+|++..+++|+++ +....+.+++.++|+|| .+++.+++..... .+..... ..++........ ...
T Consensus 100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 176 (235)
T 3sm3_A 100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYL---HDFPITKEEGSFLARDPETG 176 (235)
T ss_dssp TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHH---HHHHHHCSTTEEEEECTTTC
T ss_pred CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhh---hhccchhhhcceEecccccC
Confidence 99999999999999974 33446667899999999 7778777654321 1111000 000000000000 000
Q ss_pred cCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002222 864 RNHDHKFEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 864 Rh~DHkFEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
....|...++++++.+ ++.+.||.+...
T Consensus 177 ~~~~~~~~~~~~~l~~----ll~~aGf~~~~~ 204 (235)
T 3sm3_A 177 ETEFIAHHFTEKELVF----LLTDCRFEIDYF 204 (235)
T ss_dssp CEEEEEECBCHHHHHH----HHHTTTEEEEEE
T ss_pred CcceeeEeCCHHHHHH----HHHHcCCEEEEE
Confidence 1123456789999994 577889988643
No 52
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.52 E-value=5.1e-14 Score=146.27 Aligned_cols=157 Identities=11% Similarity=0.155 Sum_probs=110.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++. .++++.++
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~ 107 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNY-----------------PHLHFDVA 107 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-----------------TTSCEEEC
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhC-----------------CCCEEEEC
Confidence 44556666678899999999999999999855 79999999999999997652 36889999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh-HHHHhhccCccCCCCchhhhhcc
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN-AILQKSSSTIQEDDPDEKTQLQS 860 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN-~lf~~L~~~~~~eYPde~~~~~~ 860 (951)
|+.++++ .++||+|++..+++|++ +.... .+++.++|||| .+++.+|+.... .+...+.. .+ .. ..+
T Consensus 108 d~~~~~~-~~~fD~v~~~~~l~~~~-d~~~~-l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~----~~--~~--~~~ 176 (279)
T 3ccf_A 108 DARNFRV-DKPLDAVFSNAMLHWVK-EPEAA-IASIHQALKSGGRFVAEFGGKGNIKYILEALYN----AL--ET--LGI 176 (279)
T ss_dssp CTTTCCC-SSCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHH----HH--HH--HTC
T ss_pred ChhhCCc-CCCcCEEEEcchhhhCc-CHHHH-HHHHHHhcCCCcEEEEEecCCcchHHHHHHHHH----HH--Hh--cCC
Confidence 9999886 57899999999999998 44344 45799999999 788888875331 22111100 00 00 000
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 861 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 861 ~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
.......+...++.+++.. ++.+.||.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~----~l~~aGf~~~~ 206 (279)
T 3ccf_A 177 HNPQALNPWYFPSIGEYVN----ILEKQGFDVTY 206 (279)
T ss_dssp CCGGGGCCCCCCCHHHHHH----HHHHHTEEEEE
T ss_pred ccccCcCceeCCCHHHHHH----HHHHcCCEEEE
Confidence 0011223334578888885 45677998743
No 53
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.51 E-value=2.7e-13 Score=139.44 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=114.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChH------HHHHHHHHHHhhhhcccccCCCCCC
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK------SLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISee------mLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
.+..+++.+...++.+|||||||+|.++..+++..++..+|+|+|+|+. +++.|++++... +.
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-----------~~ 99 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-----------PL 99 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-----------TT
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-----------CC
Confidence 3445566666678899999999999999999987424469999999997 999998876521 12
Q ss_pred CccEEEEEcc---ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh------HHHHhh
Q 002222 774 VKSAVLFDGS---ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN------AILQKS 843 (951)
Q Consensus 774 ~~nVtf~qGD---a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN------~lf~~L 843 (951)
..++++.++| ...+++.+++||+|++..+++|+++.. . +.+.+.++++|| .+++.++..... ..+..+
T Consensus 100 ~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~-~-~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 177 (275)
T 3bkx_A 100 GDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN-A-LALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAM 177 (275)
T ss_dssp GGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH-H-HHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHH
T ss_pred CCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHH-H-HHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHH
Confidence 2579999998 455666778999999999999999554 3 566666777767 777776553211 111111
Q ss_pred ccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 844 SSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 844 ~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
.. . .| ..........|...++.+++.+| +.+.||.+.-
T Consensus 178 ~~--~-~~------~~~~~~~~~~~~~~~s~~~l~~~----l~~aGf~~~~ 215 (275)
T 3bkx_A 178 IQ--G-LL------YAIAPSDVANIRTLITPDTLAQI----AHDNTWTYTA 215 (275)
T ss_dssp HH--H-HH------HHHSCCTTCSCCCCCCHHHHHHH----HHHHTCEEEE
T ss_pred HH--H-HH------hhccccccccccccCCHHHHHHH----HHHCCCeeEE
Confidence 00 0 00 00011112344556899999965 5567998854
No 54
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.51 E-value=1.8e-13 Score=141.54 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++... +...++++.++|+.+.++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~ 129 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNM-----------KRRFKVFFRAQDSYGRHMD 129 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTS-----------CCSSEEEEEESCTTTSCCC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhc-----------CCCccEEEEECCccccccC
Confidence 4678999999999999998888752 59999999999999999876421 122479999999999887
Q ss_pred CCCCccEEEEcccccc--CchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 790 RLHGFDIGTCLEVIEH--MEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 790 ~d~sFDlVVcieVLEH--L~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
..+.||+|++..+++| ...+....+.+++.++|||| .+++.+|+.+
T Consensus 130 ~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 178 (298)
T 1ri5_A 130 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178 (298)
T ss_dssp CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 5788999999999988 34445556667899999999 8899999853
No 55
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.51 E-value=1.5e-13 Score=142.91 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002222 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+. ++++.++|
T Consensus 112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~------------~~~-~~~~~~~d 175 (286)
T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEK------------ENL-NISTALYD 175 (286)
T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTC-CEEEEECC
T ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEec
Confidence 3344455578999999999999999999987 6999999999999999987642 223 89999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+.+++. .+.||+|++..+++|++++....+.+++.++|+|| .+++.++
T Consensus 176 ~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 176 INAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999877 78899999999999998777777778899999999 5455444
No 56
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.50 E-value=4.5e-13 Score=134.49 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
+....+++.+.+. ++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++... + .+
T Consensus 20 ~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~------------~-~~ 80 (243)
T 3d2l_A 20 YPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMET------------N-RH 80 (243)
T ss_dssp HHHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHT------------T-CC
T ss_pred HHHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhc------------C-Cc
Confidence 4445556666654 4589999999999999999876 48999999999999998876421 1 47
Q ss_pred EEEEEccccccCCCCCCccEEEEcc-ccccCc-hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 777 AVLFDGSITVFDSRLHGFDIGTCLE-VIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVcie-VLEHL~-dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+++.++|+.+++.. ++||+|++.. +++|+. .+....+.+++.++|+|| .+++.+++..
T Consensus 81 ~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 141 (243)
T 3d2l_A 81 VDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141 (243)
T ss_dssp CEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred eEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHH
Confidence 89999999988765 7899999986 999994 344556667899999999 7888888743
No 57
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.50 E-value=1.4e-13 Score=135.93 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++ .++.+..
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------------------~~~~~~~ 100 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA------------------GAGEVHL 100 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT------------------CSSCEEE
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh------------------cccccch
Confidence 345566666678999999999999999999986 6999999999999999763 2567788
Q ss_pred cccccc---CCCCC-CccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhh
Q 002222 782 GSITVF---DSRLH-GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKT 856 (951)
Q Consensus 782 GDa~dL---p~~d~-sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~ 856 (951)
+++.++ +.... +||+|++..+++ .. +.. .+.+++.++|||| .+++.+++......-. + ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-~----~~~~~~--- 169 (227)
T 3e8s_A 101 ASYAQLAEAKVPVGKDYDLICANFALL-HQ-DII-ELLSAMRTLLVPGGALVIQTLHPWSVADGD-Y----QDGWRE--- 169 (227)
T ss_dssp CCHHHHHTTCSCCCCCEEEEEEESCCC-SS-CCH-HHHHHHHHTEEEEEEEEEEECCTTTTCTTC-C----SCEEEE---
T ss_pred hhHHhhcccccccCCCccEEEECchhh-hh-hHH-HHHHHHHHHhCCCeEEEEEecCccccCccc-c----ccccch---
Confidence 888776 44444 599999999999 33 333 4446799999999 8888888764321100 0 000000
Q ss_pred hhcccccc---CCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002222 857 QLQSCKFR---NHDHKFEWTRDQFNCWATELAARHNYSVEFSG 896 (951)
Q Consensus 857 ~~~~~~fR---h~DHkFEWTreEFqaWae~LA~r~GYsVEf~G 896 (951)
..+..+. ...+...++.+++. .++.++||.+.-.-
T Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 170 -ESFAGFAGDWQPMPWYFRTLASWL----NALDMAGLRLVSLQ 207 (227)
T ss_dssp -ECCTTSSSCCCCEEEEECCHHHHH----HHHHHTTEEEEEEE
T ss_pred -hhhhccccCcccceEEEecHHHHH----HHHHHcCCeEEEEe
Confidence 0011111 12334557999988 46778899986533
No 58
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.49 E-value=2.8e-13 Score=142.31 Aligned_cols=149 Identities=10% Similarity=0.152 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchhHH----HHhcCCCCCce--EEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc--EEEEEcc
Q 002222 712 CATTLVDFGCGSGSLLD----SLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS--AVLFDGS 783 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~----~LAk~g~~~~q--VVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n--Vtf~qGD 783 (951)
++.+|||||||+|.++. .++..+ +... ++|+|+|++|++.|++++... .+..+ +.+.+++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~-----------~~~~~v~~~~~~~~ 119 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKT-----------SNLENVKFAWHKET 119 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTC-----------SSCTTEEEEEECSC
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhc-----------cCCCcceEEEEecc
Confidence 45799999999997654 333332 1243 499999999999998876421 12234 4556777
Q ss_pred ccccC------CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc--hhHHHHhhccCccCCCCch
Q 002222 784 ITVFD------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE--YNAILQKSSSTIQEDDPDE 854 (951)
Q Consensus 784 a~dLp------~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE--fN~lf~~L~~~~~~eYPde 854 (951)
+.+++ +.+++||+|++..++||++ |....+ +++.++|||| .+++.+++.+ +..++...
T Consensus 120 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-d~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~----------- 186 (292)
T 2aot_A 120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVK-DIPATL-KFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY----------- 186 (292)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEESCGGGCS-CHHHHH-HHHHHTEEEEEEEEEEEECTTSHHHHHHHHH-----------
T ss_pred hhhhhhhhccccCCCceeEEEEeeeeeecC-CHHHHH-HHHHHHcCCCcEEEEEEecCCccHHHHHHHH-----------
Confidence 76554 4578999999999999999 444454 5699999999 6666665532 22333221
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 855 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 855 ~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
+..+....|...++.+++.+| +.++||.+..
T Consensus 187 -----~~~~~~~~~~~~~~~~~~~~~----l~~aGf~~~~ 217 (292)
T 2aot_A 187 -----GSRFPQDDLCQYITSDDLTQM----LDNLGLKYEC 217 (292)
T ss_dssp -----GGGSCCCTTCCCCCHHHHHHH----HHHHTCCEEE
T ss_pred -----HHhccCCCcccCCCHHHHHHH----HHHCCCceEE
Confidence 111222345566889888855 5667987753
No 59
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.47 E-value=1.8e-13 Score=141.09 Aligned_cols=109 Identities=20% Similarity=0.269 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.. .+..++++.++|+.++++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEK------------NGIKNVKFLQANIFSLPFE 102 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEECCGGGCCSC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCCcEEEEcccccCCCC
Confidence 467899999999999999999875 347999999999999999987652 2345799999999999988
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+++||+|++..+++|+++.. .+.+++.++|||| .+++.+++.
T Consensus 103 ~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp TTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECG
T ss_pred CCCeeEEEEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCC
Confidence 89999999999999998443 4446799999999 777777653
No 60
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.47 E-value=2.4e-13 Score=133.73 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCccchh-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 711 SCATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~l-l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
.++.+|||+|||+|.+ ...+++.+ .+|+|+|+|+.+++.|++++... + .++++.++|+.++++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~-~~~~~~~~d~~~~~~ 85 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSREN------------N-FKLNISKGDIRKLPF 85 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHH------------T-CCCCEEECCTTSCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhc------------C-CceEEEECchhhCCC
Confidence 4578999999999998 55555655 69999999999999998876421 1 368899999999988
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.++.||+|++..+++|++.+....+.+++.++|||| .+++.+++.
T Consensus 86 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 888999999999999997666667777899999998 778877764
No 61
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.47 E-value=8.6e-13 Score=132.36 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
.+....+.+...+ ++.+|||||||+|.++..+++. +|+|+|+.+++.|+++
T Consensus 34 ~~~~~~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~------------------- 84 (219)
T 1vlm_A 34 AYLSELQAVKCLL---PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR------------------- 84 (219)
T ss_dssp HHHHHHHHHHHHC---CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------------------
T ss_pred hHHHHHHHHHHhC---CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------------------
Confidence 3344444444433 3789999999999999988653 9999999999999752
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh--HHHHhhccCccCCCC
Q 002222 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN--AILQKSSSTIQEDDP 852 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN--~lf~~L~~~~~~eYP 852 (951)
++++.++|+.++++..+.||+|++..+++|++ +.. .+.+++.++|+|| .+++.+++.+.. ..+...
T Consensus 85 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--------- 153 (219)
T 1vlm_A 85 GVFVLKGTAENLPLKDESFDFALMVTTICFVD-DPE-RALKEAYRILKKGGYLIVGIVDRESFLGREYEKN--------- 153 (219)
T ss_dssp TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHH-HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT---------
T ss_pred CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-CHH-HHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH---------
Confidence 57889999999888888999999999999997 443 4446799999998 888888875422 122111
Q ss_pred chhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002222 853 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 853 de~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
........|...|+++++.. ++.+.||.+.
T Consensus 154 -------~~~~~~~~~~~~~~~~~l~~----~l~~~Gf~~~ 183 (219)
T 1vlm_A 154 -------KEKSVFYKNARFFSTEELMD----LMRKAGFEEF 183 (219)
T ss_dssp -------TTC-CCSTTCCCCCHHHHHH----HHHHTTCEEE
T ss_pred -------hcCcchhcccccCCHHHHHH----HHHHCCCeEE
Confidence 01111224556689999995 5677899874
No 62
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.47 E-value=5.9e-14 Score=154.47 Aligned_cols=150 Identities=14% Similarity=0.177 Sum_probs=107.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002222 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++- . ......+..++
T Consensus 99 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~---~-----------~~~~~~~~~~~ 161 (416)
T 4e2x_A 99 FLATELTGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKG---I-----------RVRTDFFEKAT 161 (416)
T ss_dssp HHHTTTCSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTT---C-----------CEECSCCSHHH
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcC---C-----------Ccceeeechhh
Confidence 4444444567899999999999999999987 69999999999999997630 0 00011233445
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhcccc
Q 002222 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCK 862 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~ 862 (951)
+..+++.+++||+|++.+++||++ +.... .+++.++|||| .+++.+|+... ..... . +..
T Consensus 162 ~~~l~~~~~~fD~I~~~~vl~h~~-d~~~~-l~~~~r~LkpgG~l~i~~~~~~~--~~~~~------~---------~~~ 222 (416)
T 4e2x_A 162 ADDVRRTEGPANVIYAANTLCHIP-YVQSV-LEGVDALLAPDGVFVFEDPYLGD--IVAKT------S---------FDQ 222 (416)
T ss_dssp HHHHHHHHCCEEEEEEESCGGGCT-THHHH-HHHHHHHEEEEEEEEEEEECHHH--HHHHT------C---------GGG
T ss_pred HhhcccCCCCEEEEEECChHHhcC-CHHHH-HHHHHHHcCCCeEEEEEeCChHH--hhhhc------c---------hhh
Confidence 556666678999999999999998 55444 45799999998 88889998532 22111 0 111
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 863 FRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 863 fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
+ .+.|...++.+++. .++.++||.+.-
T Consensus 223 ~-~~~~~~~~s~~~l~----~ll~~aGf~~~~ 249 (416)
T 4e2x_A 223 I-FDEHFFLFSATSVQ----GMAQRCGFELVD 249 (416)
T ss_dssp C-STTCCEECCHHHHH----HHHHHTTEEEEE
T ss_pred h-hhhhhhcCCHHHHH----HHHHHcCCEEEE
Confidence 1 14677778999888 567889998754
No 63
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.46 E-value=7.2e-13 Score=140.05 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|.++..++....+..+|+|+|+|+.+++.|++++... +...+++++++|+.++++.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~ 185 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-----------ALAGQITLHRQDAWKLDTR 185 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-----------TTGGGEEEEECCGGGCCCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEEECchhcCCcc
Confidence 56789999999999999998632223479999999999999999876421 2234699999999999877
Q ss_pred CCCccEEEEccccccCchhH-HHHHHHHHHHccCCC-EEEEEecCC
Q 002222 791 LHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~-l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++||+|++..+++|++++. ...+.+++.++|||| .+++.+...
T Consensus 186 -~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 186 -EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp -SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred -CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 8999999999999997443 334667899999999 777776543
No 64
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=2.8e-13 Score=137.31 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=114.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++. ..++++.++|+.+++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQA 116 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc---------------ccCceEEECcccccccc
Confidence 456799999999999999999987 489999999999999987631 23799999999886543
Q ss_pred C-----CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhcccccc
Q 002222 791 L-----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 864 (951)
Q Consensus 791 d-----~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fR 864 (951)
. ..||+|++..+++|++++....+.+++.++|||| .+++..+......++..+.. ....-|. . ....++
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~ 191 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLE-KYGQLPY-E---LLLVME 191 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHH-HHSSCCH-H---HHHHHT
T ss_pred cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHh-CCCCCch-h---hhhccc
Confidence 2 3499999999999999776677778899999998 77888777655444433211 0001111 0 011122
Q ss_pred CCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002222 865 NHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 899 (951)
Q Consensus 865 h~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~ 899 (951)
+......++++++..++ .||++.-.+.-.
T Consensus 192 ~~~~~~~~~~~~~~~~~------aGf~~~~~~~~~ 220 (245)
T 3ggd_A 192 HGIRPGIFTAEDIELYF------PDFEILSQGEGL 220 (245)
T ss_dssp TTCCCCCCCHHHHHHHC------TTEEEEEEECCB
T ss_pred cCCCCCccCHHHHHHHh------CCCEEEeccccc
Confidence 33233457999999654 799987655443
No 65
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.44 E-value=8.6e-13 Score=131.15 Aligned_cols=107 Identities=24% Similarity=0.335 Sum_probs=89.8
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++... .+ .++++.++|+.++++..
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~-~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKS------------RE-SNVEFIVGDARKLSFED 101 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TT-CCCEEEECCTTSCCSCT
T ss_pred CCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh------------cC-CCceEEECchhcCCCCC
Confidence 47899999999999999999987 4999999999999999887642 11 47999999999988777
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++||+|++..++++...+....+.+++.++|+|| .+++.+|+.
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 8999999999966665444556667899999998 788888873
No 66
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.43 E-value=1e-12 Score=137.55 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=95.5
Q ss_pred HHHHHHHHh-hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 700 RVEYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 700 R~e~VldlL-~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
...++.+.+ ...++.+|||||||+|.++..+++..+...+|+|+|+|+.+++.|++++.. ...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------~~~~v~ 75 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-------------LPYDSE 75 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-------------SSSEEE
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-------------cCCceE
Confidence 344555554 445778999999999999999998853237999999999999999887641 223899
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+.++|+.++++ .++||+|++..+++|+++ .. .+.+++.++|||| .+++..|+
T Consensus 76 ~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~-~~-~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 76 FLEGDATEIEL-NDKYDIAICHAFLLHMTT-PE-TMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEESCTTTCCC-SSCEEEEEEESCGGGCSS-HH-HHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcchhhcCc-CCCeeEEEECChhhcCCC-HH-HHHHHHHHHcCCCCEEEEEecc
Confidence 99999999887 468999999999999984 43 4445799999999 88888887
No 67
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=2.9e-13 Score=139.77 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
...+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++ .+++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~------------------~~~~ 79 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVH------------------PQVE 79 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCC------------------TTEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhc------------------cCCE
Confidence 345567777776788999999999999999999865 7999999999999887431 1899
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+.++|+.++++.+++||+|++..+++|++ +.... .+++.++|| | .+++.+++.
T Consensus 80 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 80 WFTGYAENLALPDKSVDGVISILAIHHFS-HLEKS-FQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp EECCCTTSCCSCTTCBSEEEEESCGGGCS-SHHHH-HHHHHHHBC-SSCEEEEEECG
T ss_pred EEECchhhCCCCCCCEeEEEEcchHhhcc-CHHHH-HHHHHHHhC-CcEEEEEEcCC
Confidence 99999999998889999999999999997 44344 457999999 8 677777764
No 68
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.42 E-value=6.3e-13 Score=139.60 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
...++.+.+... .++.+|||||||+|.++..|++...+..+|+|+|+|+.+++.|++++... .+...++
T Consensus 23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~~v 91 (299)
T 3g5t_A 23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS----------PDTYKNV 91 (299)
T ss_dssp HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC----------C-CCTTE
T ss_pred HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc----------cCCCCce
Confidence 334445555433 47789999999999999999952212389999999999999999876531 0124589
Q ss_pred EEEEccccccCCCC------CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 778 VLFDGSITVFDSRL------HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 778 tf~qGDa~dLp~~d------~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
+++++|+.++++.. ++||+|++..++||+ +. ..+.+++.++|+|| .+++
T Consensus 92 ~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~-~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 92 SFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF--DF-EKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS--CH-HHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh--CH-HHHHHHHHHhcCCCcEEEE
Confidence 99999999988777 899999999999999 33 34456799999999 5555
No 69
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.42 E-value=1.2e-12 Score=132.99 Aligned_cols=118 Identities=19% Similarity=0.372 Sum_probs=94.0
Q ss_pred HHHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 700 RVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 700 R~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
..+++.+.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... .+ .+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~------------~~-~~ 89 (252)
T 1wzn_A 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKE------------RN-LK 89 (252)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TT-CC
T ss_pred HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHh------------cC-Cc
Confidence 34455555443 456899999999999999999986 6999999999999999887642 11 27
Q ss_pred EEEEEccccccCCCCCCccEEEEc-cccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 777 AVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVci-eVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+++.++|+.+++.. ..||+|+|. .+++|+..+....+.+++.++|+|| .+++.+|+.
T Consensus 90 v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 148 (252)
T 1wzn_A 90 IEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (252)
T ss_dssp CEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred eEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence 89999999988764 689999997 4677777666667777899999999 788888874
No 70
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.42 E-value=2.1e-12 Score=131.33 Aligned_cols=158 Identities=11% Similarity=-0.003 Sum_probs=103.0
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcc---------cccCCCCCC--------
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK---------LDAAVPCTD-------- 773 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~---------~~~l~Pr~~-------- 773 (951)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++....... .........
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4567999999999999998888762 489999999999999988764210000 000000000
Q ss_pred CccE-EEEEccccccCC-CC---CCccEEEEccccccCchh--HHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002222 774 VKSA-VLFDGSITVFDS-RL---HGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 845 (951)
Q Consensus 774 ~~nV-tf~qGDa~dLp~-~d---~sFDlVVcieVLEHL~dD--~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~ 845 (951)
..++ .+.++|+.+.+. .. ++||+|+|..+++|+.+. ....+.+++.++|||| .+++.++..+. .+.
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~--~~~---- 206 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS--YYM---- 206 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC--EEE----
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc--eEE----
Confidence 0127 999999988654 44 789999999999966533 4455566799999999 67776643220 000
Q ss_pred CccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002222 846 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 896 (951)
Q Consensus 846 ~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~G 896 (951)
.... .-+...++++++.+ ++.+.||.+....
T Consensus 207 --------------~~~~--~~~~~~~~~~~~~~----~l~~aGf~~~~~~ 237 (265)
T 2i62_A 207 --------------IGEQ--KFSSLPLGWETVRD----AVEEAGYTIEQFE 237 (265)
T ss_dssp --------------ETTE--EEECCCCCHHHHHH----HHHHTTCEEEEEE
T ss_pred --------------cCCc--cccccccCHHHHHH----HHHHCCCEEEEEE
Confidence 0000 01223478888884 5677899885433
No 71
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.41 E-value=8.8e-13 Score=135.75 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=110.9
Q ss_pred hhhhccCcccchhcccccccccceeeeecccCC-----Chh--------hhhhhhcCCChhHHHHHHHHHHHhhcCCCCE
Q 002222 649 ILAAADDSARTFSLLSSRACCLEYHITLLRVTE-----PPE--------DRMEQALFSPPLSKQRVEYALQHIKESCATT 715 (951)
Q Consensus 649 ~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e-----p~E--------eRye~~~F~PPL~~QR~e~VldlL~~~k~kr 715 (951)
.+.|.+.+..+++ .++|++++.... +.. ..+....++.++.....+.+...+. .++.+
T Consensus 18 ~~~C~~~~~~~~~--------~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (269)
T 1p91_A 18 SYICPQRHQFDMA--------KEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLD-DKATA 88 (269)
T ss_dssp EEECTTCCEEEBC--------TTSCEECSCSSSSCSCCCSSSHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCE
T ss_pred EEECCCCCcCCcC--------CCEEEEeecccccCCCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCE
Confidence 4567777777765 567888775422 221 1133344555655544444444332 46789
Q ss_pred EEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCcc
Q 002222 716 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 795 (951)
Q Consensus 716 VLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFD 795 (951)
|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. .++.+..+|+.++++.+++||
T Consensus 89 vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~~~fD 150 (269)
T 1p91_A 89 VLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHRLPFSDTSMD 150 (269)
T ss_dssp EEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTSCSBCTTCEE
T ss_pred EEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhhCCCCCCcee
Confidence 9999999999999999874 2279999999999999997652 267899999999988888999
Q ss_pred EEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 796 IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 796 lVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+|++..+... .+++.++|||| .+++.+|+.+.
T Consensus 151 ~v~~~~~~~~---------l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 151 AIIRIYAPCK---------AEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp EEEEESCCCC---------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEEEeCChhh---------HHHHHHhcCCCcEEEEEEcCHHH
Confidence 9999877332 24689999998 88889998754
No 72
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.41 E-value=8.1e-13 Score=129.66 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ...++++.++|+.++++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~--------------~~~~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYA--------------HVPQLRWETMDVRKLDFP 104 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTT--------------TCTTCEEEECCTTSCCSC
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcc--------------cCCCcEEEEcchhcCCCC
Confidence 4678999999999999999998873 389999999999999987642 124789999999998888
Q ss_pred CCCccEEEEccccccCc-------------hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 791 LHGFDIGTCLEVIEHME-------------EDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~-------------dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+++||+|++..+++|+. .+....+.+++.++|||| .+++.+++.
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 88999999999998876 334456667899999999 888888875
No 73
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.41 E-value=5.4e-13 Score=146.55 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 787 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-- 787 (951)
..++.+|||||||+|.++..+++..++..+|+|+|+|+.+++.|++++....... . ......+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~--g~~~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF--F--GSPSRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHH--H--SSTTCCCEEEEESCTTCGGG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhc--c--cccCCCceEEEEccHHHhhh
Confidence 3467899999999999999998763234799999999999999988754321000 0 001125899999999987
Q ss_pred ----CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 788 ----DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 788 ----p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++.+++||+|++..+++|++ +.. .+.+++.++|||| .+++.+++.
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~-d~~-~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST-NKL-ALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS-CHH-HHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccCCCCCCCEEEEEEccchhcCC-CHH-HHHHHHHHHcCCCCEEEEEEecc
Confidence 77888999999999999998 443 4456799999999 777776653
No 74
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.41 E-value=1.8e-12 Score=124.63 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=98.6
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|.|+......+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++..
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~------------ 96 (194)
T 1dus_A 32 FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKL------------ 96 (194)
T ss_dssp TTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------
T ss_pred CCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHH------------
Confidence 4444322344566777766688899999999999999999885 7999999999999999987642
Q ss_pred CCCcc--EEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 772 TDVKS--AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 772 ~~~~n--Vtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
.+..+ +++.++|+.+. ...+.||+|++...++|.. +....+.+.+.++|+|| .+++.+++...
T Consensus 97 ~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 162 (194)
T 1dus_A 97 NNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVIQTKQG 162 (194)
T ss_dssp TTCTTSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred cCCCccceEEEECchhcc-cccCCceEEEECCCcccch-hHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 12334 99999999874 3467899999998888754 44455566799999998 88888887643
No 75
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.39 E-value=2.3e-12 Score=136.75 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=113.1
Q ss_pred HHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 702 EYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 702 e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
..+.+.+.. .+..+|||||||+|.++..+++.. +..+++|+|++ .+++.|++++... +...++++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~-----------~~~~~v~~ 219 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQ-----------GVASRYHT 219 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHH-----------TCGGGEEE
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhc-----------CCCcceEE
Confidence 345555554 677899999999999999999875 34799999999 9999999876531 12247999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh---HHHHhhccCccCCCCchh
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN---AILQKSSSTIQEDDPDEK 855 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN---~lf~~L~~~~~~eYPde~ 855 (951)
..+|+.+.+++. +||+|++..++||++++....+.+++.++|+|| .+++..+..... +.+..+.
T Consensus 220 ~~~d~~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~----------- 287 (335)
T 2r3s_A 220 IAGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAF----------- 287 (335)
T ss_dssp EESCTTTSCCCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHH-----------
T ss_pred EecccccCCCCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHH-----------
Confidence 999998876543 499999999999998777677778899999998 677776653211 1111100
Q ss_pred hhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002222 856 TQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 856 ~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
...-.....+..+++.+++.+| +.+.||.+.
T Consensus 288 ---~~~~~~~~~~~~~~t~~~~~~l----l~~aGf~~~ 318 (335)
T 2r3s_A 288 ---SLVMLATTPNGDAYTFAEYESM----FSNAGFSHS 318 (335)
T ss_dssp ---HHHHHHHSSSCCCCCHHHHHHH----HHHTTCSEE
T ss_pred ---HHHHHeeCCCCCcCCHHHHHHH----HHHCCCCee
Confidence 0000111123456899999954 567899653
No 76
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.39 E-value=3.6e-13 Score=155.77 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=85.4
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--CC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL--p~ 789 (951)
++.+|||||||.|.++..|++.| ++|+|||+|+.+|+.|+.... ..+..+|+|.+++++++ ..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~------------~~~~~~~~~~~~~~~~~~~~~ 130 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAE------------ENPDFAAEFRVGRIEEVIAAL 130 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH------------TSTTSEEEEEECCHHHHHHHC
T ss_pred CCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHH------------hcCCCceEEEECCHHHHhhhc
Confidence 56799999999999999999998 799999999999999987543 12335899999999987 44
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEecCCch
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYEY 836 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTPNsEf 836 (951)
.++.||+|+|.+++||++++........+++.|+++ .+++.....+|
T Consensus 131 ~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 131 EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEE 179 (569)
T ss_dssp CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence 567899999999999999654322233467777776 44444444443
No 77
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.39 E-value=2.2e-12 Score=136.96 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.+.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. ...++.
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~-------------~~v~~~ 95 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALAD-------------RCVTID 95 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSS-------------SCCEEE
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHh-------------ccceee
Confidence 455667777777788999999999999999999987 7999999999999999887531 111233
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 837 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN 837 (951)
+...+........+.||+|++..+++|+..++...+.+.+.++| || .++++.+...|.
T Consensus 96 ~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~ 154 (261)
T 3iv6_A 96 LLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYD 154 (261)
T ss_dssp ECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCH
T ss_pred eeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCccc
Confidence 32222200111246899999999999998777666667899999 98 888888765543
No 78
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.39 E-value=1.3e-12 Score=140.27 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=84.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccc------c
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI------T 785 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa------~ 785 (951)
++.+|||||||+|..+..+++.+. .+|+|+|+|+.||+.|+++........ +....+++|.++|+ .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~------~~~~~~~~f~~~d~~~d~~~~ 119 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGI------KTKYYKFDYIQETIRSDTFVS 119 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccc------cccccccchhhhhcccchhhh
Confidence 468999999999987765555442 689999999999999998764311000 00111367888887 3
Q ss_pred cc--CCCCCCccEEEEccccccCc-hhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 786 VF--DSRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 786 dL--p~~d~sFDlVVcieVLEHL~-dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
++ ++.+++||+|+|..++||+. .+....+.+++.++|||| .+++++||.+.
T Consensus 120 ~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 120 SVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp HHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred hhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 33 23567999999999999862 223356667899999999 88999998543
No 79
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.39 E-value=1.2e-12 Score=134.94 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.. .+ +.++|+.++++.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~----------------~~--~~~~d~~~~~~~~ 112 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGV----------------KN--VVEAKAEDLPFPS 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTC----------------SC--EEECCTTSCCSCT
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcC----------------CC--EEECcHHHCCCCC
Confidence 67899999999999999999886 699999999999999987521 12 8889999998888
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+.||+|++..+++|+.++. ..+.+++.++|||| .+++.+||.
T Consensus 113 ~~fD~v~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 113 GAFEAVLALGDVLSYVENK-DKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp TCEEEEEECSSHHHHCSCH-HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CCEEEEEEcchhhhccccH-HHHHHHHHHHcCCCeEEEEEeCCh
Confidence 8999999999888885454 44556799999999 888899885
No 80
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.39 E-value=1.4e-12 Score=129.24 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=94.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
....+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+..++++
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~ 129 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN------------LDLHNVST 129 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHH------------TTCCSEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHH------------cCCCceEE
Confidence 34456667777788999999999999999999886 7999999999999999987652 23347999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.++|+.+.....++||+|++..+++|+++ .+.++|||| .++++.++
T Consensus 130 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 130 RHGDGWQGWQARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESCGGGCCGGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EECCcccCCccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999887766789999999999999993 478899999 88888887
No 81
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.39 E-value=2.3e-12 Score=126.46 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=91.5
Q ss_pred HHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 701 VEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 701 ~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
.+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... +..++
T Consensus 30 ~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~------------~~~~v 95 (189)
T 3p9n_A 30 RESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEAL------------GLSGA 95 (189)
T ss_dssp HHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHH------------TCSCE
T ss_pred HHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHc------------CCCce
Confidence 3344444443 5778999999999999998877652 68999999999999999876531 23589
Q ss_pred EEEEccccccC--CCCCCccEEEEccccccCchhHHHHHHHHHHH--ccCCC-EEEEEecCC
Q 002222 778 VLFDGSITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS--SFRPR-ILIVSTPNY 834 (951)
Q Consensus 778 tf~qGDa~dLp--~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~R--vLKPG-vLIISTPNs 834 (951)
+++++|+.++. +....||+|++...++|..++. ..+.+.+.+ +|+|| .+++.++..
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~-~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADV-DAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHH-HHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCcchhhH-HHHHHHHHhcCccCCCeEEEEEecCC
Confidence 99999998864 3367899999998877764333 444456888 99999 888887764
No 82
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.37 E-value=2.1e-12 Score=136.82 Aligned_cols=117 Identities=23% Similarity=0.256 Sum_probs=90.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC---
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 788 (951)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++........ ......++++.++|+.+++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~ 106 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRR-----DSEYIFSAEFITADSSKELLID 106 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSS-----CC-CCCEEEEEECCTTTSCSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcc-----cccccceEEEEEecccccchhh
Confidence 67899999999999999998754 3799999999999999998764321000 0012347999999999876
Q ss_pred -CC--CCCccEEEEccccccC-c-hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 789 -SR--LHGFDIGTCLEVIEHM-E-EDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 789 -~~--d~sFDlVVcieVLEHL-~-dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+. .++||+|+|..++||+ . .+....+.+++.++|||| .+++++|+.+
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (313)
T 3bgv_A 107 KFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSF 159 (313)
T ss_dssp TCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred hcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence 43 4589999999999998 3 234456667899999999 8899999863
No 83
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.37 E-value=6.2e-12 Score=120.42 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc-cEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAV 778 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~-nVt 778 (951)
....+.+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+.. ++
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~------------~~~~~~~- 78 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAIN------------LGVSDRI- 78 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHT------------TTCTTSE-
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHH------------hCCCCCE-
Confidence 34556666666778899999999999999999885 348999999999999999987652 2223 78
Q ss_pred EEEccccc-cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 779 LFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 779 f~qGDa~d-Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++++|+.+ ++...+.||+|++..+++| ..+.+++.++|+|| .+++.+++.
T Consensus 79 ~~~~d~~~~~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 79 AVQQGAPRAFDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp EEECCTTGGGGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred EEecchHhhhhccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeecc
Confidence 88888854 3333378999999999988 23445699999998 777777653
No 84
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.37 E-value=1.5e-12 Score=135.26 Aligned_cols=161 Identities=11% Similarity=0.005 Sum_probs=101.5
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcc---------cccCCCCC--------
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK---------LDAAVPCT-------- 772 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~---------~~~l~Pr~-------- 772 (951)
..++.+|||||||+|.+...++..+ ..+|+|+|+|+.|++.|++++....... ........
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 3467899999999998887766665 1479999999999999988764211000 00000000
Q ss_pred CCccEE-EEEcccccc-CC---CCCCccEEEEccccccCch--hHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhc
Q 002222 773 DVKSAV-LFDGSITVF-DS---RLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSS 844 (951)
Q Consensus 773 ~~~nVt-f~qGDa~dL-p~---~d~sFDlVVcieVLEHL~d--D~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~ 844 (951)
...++. +.++|+.+. ++ ...+||+|+++.++||+.+ ++...+.+++.++|||| .++++++..+-
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~-------- 202 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-------- 202 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC--------
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc--------
Confidence 011354 899999884 32 2568999999999999742 33345556799999999 77777643210
Q ss_pred cCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002222 845 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 898 (951)
Q Consensus 845 ~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG 898 (951)
.| ..... .. +.+.|+++++. .++.+.||.+. .....
T Consensus 203 -----~~-------~~g~~-~~-~~~~~~~~~l~----~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 203 -----SY-------MVGKR-EF-SCVALEKGEVE----QAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp -----EE-------EETTE-EE-ECCCCCHHHHH----HHHHHTTEEEEEEEEEC
T ss_pred -----cc-------eeCCe-Ee-eccccCHHHHH----HHHHHCCCEEEEEeecc
Confidence 00 00000 00 11357888888 45677899875 44443
No 85
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.36 E-value=6.6e-12 Score=134.80 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=113.2
Q ss_pred HHHHHhhcCC-CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 703 YALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 703 ~VldlL~~~k-~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
.+++.+...+ +.+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... +...++++..
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~ 235 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAH-----------DLGGRVEFFE 235 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHT-----------TCGGGEEEEE
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhc-----------CCCCceEEEe
Confidence 3444445455 7899999999999999999876 3479999999 88999998876431 2234799999
Q ss_pred ccccccCC-CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch---hHHHHhhccCccCCCCchhh
Q 002222 782 GSITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY---NAILQKSSSTIQEDDPDEKT 856 (951)
Q Consensus 782 GDa~dLp~-~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf---N~lf~~L~~~~~~eYPde~~ 856 (951)
+|+.+.+. ...+||+|++..++||++++....+.+++.+.|+|| .++|..+.... .+.+..+.
T Consensus 236 ~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~------------ 303 (352)
T 3mcz_A 236 KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADF------------ 303 (352)
T ss_dssp CCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHH------------
T ss_pred CCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHh------------
Confidence 99988752 346699999999999999776777778899999998 66665543211 11111100
Q ss_pred hhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002222 857 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 857 ~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
...-.....+..+++.+++.+ ++.+.||.+.-.
T Consensus 304 --~~~~~~~~~~~~~~t~~e~~~----ll~~aGf~~~~~ 336 (352)
T 3mcz_A 304 --SLHMMVNTNHGELHPTPWIAG----VVRDAGLAVGER 336 (352)
T ss_dssp --HHHHHHHSTTCCCCCHHHHHH----HHHHTTCEEEEE
T ss_pred --hHHHHhhCCCCCcCCHHHHHH----HHHHCCCceeee
Confidence 000011122344678888885 567789988653
No 86
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.36 E-value=2.7e-12 Score=134.19 Aligned_cols=128 Identities=12% Similarity=0.041 Sum_probs=82.5
Q ss_pred HHHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhc---------ccccCC
Q 002222 701 VEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK---------KLDAAV 769 (951)
Q Consensus 701 ~e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~---------~~~~l~ 769 (951)
...+.+.+.. .++.+|||||||+|.+...++... ..+|+|+|+|+.|++.|++++...... ......
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 3345555433 367899999999999654444432 269999999999999998865321000 000000
Q ss_pred CCC---------CCccEEEEEccccc-cCC-----CCCCccEEEEccccccCchh--HHHHHHHHHHHccCCC-EEEEE
Q 002222 770 PCT---------DVKSAVLFDGSITV-FDS-----RLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 770 Pr~---------~~~nVtf~qGDa~d-Lp~-----~d~sFDlVVcieVLEHL~dD--~l~~L~eeL~RvLKPG-vLIIS 830 (951)
... ....+.+.++|+.+ +++ +.++||+|+|..+++|+.++ ....+.+++.++|||| .+++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 000 00126788889987 553 34569999999999996533 3445556799999999 55555
No 87
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.36 E-value=1.1e-11 Score=135.03 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--C
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL--p 788 (951)
....+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++.. .+...++++..+|+.+. +
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~ 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAG-----------LSGSERIHGHGANLLDRDVP 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTT-----------CTTGGGEEEEECCCCSSSCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHh-----------cCcccceEEEEccccccCCC
Confidence 467899999999999999999875 3479999999 9999999887642 12235899999999886 3
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++ ++||+|++..++||+++++...+.+++.+.|+|| .++|..+.
T Consensus 245 ~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 245 FP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 44 7899999999999999777777778899999999 77775543
No 88
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.35 E-value=2.8e-12 Score=128.01 Aligned_cols=157 Identities=10% Similarity=0.103 Sum_probs=102.0
Q ss_pred HHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002222 706 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
+.+...++.+|||||||+|.++..|++.. +..+|+|+|+|+.|++.+.++...... ..+..++++.++|+.
T Consensus 21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~--------~~~~~~v~~~~~d~~ 91 (218)
T 3mq2_A 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA--------KGGLPNLLYLWATAE 91 (218)
T ss_dssp HHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG--------GTCCTTEEEEECCST
T ss_pred HHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh--------hcCCCceEEEecchh
Confidence 44455678899999999999999999875 348999999999999975443321111 124458999999999
Q ss_pred ccCCCCCCccEEEEcc---cc--ccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhc
Q 002222 786 VFDSRLHGFDIGTCLE---VI--EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 859 (951)
Q Consensus 786 dLp~~d~sFDlVVcie---VL--EHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~ 859 (951)
++++..+. |.|+... .+ +|+++ .. .+.+++.++|||| .++++.....+.....
T Consensus 92 ~l~~~~~~-d~v~~~~~~~~~~~~~~~~-~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------------------ 150 (218)
T 3mq2_A 92 RLPPLSGV-GELHVLMPWGSLLRGVLGS-SP-EMLRGMAAVCRPGASFLVALNLHAWRPSVP------------------ 150 (218)
T ss_dssp TCCSCCCE-EEEEEESCCHHHHHHHHTS-SS-HHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------------------
T ss_pred hCCCCCCC-CEEEEEccchhhhhhhhcc-HH-HHHHHHHHHcCCCcEEEEEecccccccccc------------------
Confidence 99887666 7766322 23 26653 32 4446799999999 6666443322111000
Q ss_pred cccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002222 860 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 897 (951)
Q Consensus 860 ~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GV 897 (951)
..+ +...+++..+..++..+....||.+.-...
T Consensus 151 --~~~---~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 151 --EVG---EHPEPTPDSADEWLAPRYAEAGWKLADCRY 183 (218)
T ss_dssp --GGT---TCCCCCHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred --ccc---cCCccchHHHHHHHHHHHHHcCCCceeeec
Confidence 111 112245555566566778889999865443
No 89
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.34 E-value=4.6e-12 Score=123.12 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-CC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~~ 790 (951)
++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++... +..++++.++++..++ +.
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~------------~~~~v~~~~~~~~~l~~~~ 86 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDL------------GIENTELILDGHENLDHYV 86 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHH------------TCCCEEEEESCGGGGGGTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHc------------CCCcEEEEeCcHHHHHhhc
Confidence 67899999999999999999985 79999999999999999886531 2358999998887754 34
Q ss_pred CCCccEEEEc-ccccc-------CchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 791 LHGFDIGTCL-EVIEH-------MEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 791 d~sFDlVVci-eVLEH-------L~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
.++||+|++. ..+++ .+.+. ..+.+++.++|||| .+++..
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVITKPHTT-LEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp CSCEEEEEEEEC-----------CHHHH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcCEEEEeCCCCCCcchhcccChhhH-HHHHHHHHHhcCCCcEEEEEE
Confidence 6789999886 34433 33233 34445799999999 555554
No 90
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.33 E-value=1.2e-11 Score=130.78 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCcc---chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 711 SCATTLVDFGCGS---GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 711 ~k~krVLDIGCGe---G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
....+|||||||+ |.++..+.+.. +..+|+|+|+|+.|++.|++++. ...+++++++|+.+.
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~--------------~~~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLA--------------KDPNTAVFTADVRDP 140 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHT--------------TCTTEEEEECCTTCH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcC--------------CCCCeEEEEeeCCCc
Confidence 3458999999999 99887666543 33799999999999999988753 124799999999763
Q ss_pred C-----------CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 788 D-----------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 788 p-----------~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+ +....||+|++..++||++++....+.+++.++|+|| .++++....+
T Consensus 141 ~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 141 EYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred hhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 2 2235899999999999999755556667899999999 8888877654
No 91
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.33 E-value=9.3e-12 Score=134.48 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... +...++++..+
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 239 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADA-----------GLADRVTVAEG 239 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 34455555567899999999999999999876 3479999999 99999999876531 12237999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+.+ +.+ ..||+|++..++||++++....+.+++.++|+|| .++|..+
T Consensus 240 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 240 DFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCC-cCC-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9976 333 2499999999999999776566777899999999 6776655
No 92
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.32 E-value=1.2e-11 Score=122.41 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+++.+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+++++.|++++... +..++++.+
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~ 96 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKF------------VARNVTLVE 96 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHH------------TCTTEEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh------------CCCcEEEEe
Confidence 456677777788999999999999999999886 4579999999999999999876531 335799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+|+.+.......||+|++..+++. ...+.+++.++|+|| .+++.++.
T Consensus 97 ~d~~~~~~~~~~~D~i~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 97 AFAPEGLDDLPDPDRVFIGGSGGM-----LEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CCTTTTCTTSCCCSEEEESCCTTC-----HHHHHHHHHHHCCTTCEEEEEECB
T ss_pred CChhhhhhcCCCCCEEEECCCCcC-----HHHHHHHHHHhcCCCeEEEEEecc
Confidence 999766555578999999988762 234556799999999 77776554
No 93
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.32 E-value=9e-12 Score=125.20 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=91.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+ ++++
T Consensus 58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~--~v~~ 120 (231)
T 1vbf_A 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY------------YN--NIKL 120 (231)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT------------CS--SEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhh------------cC--CeEE
Confidence 34466677776778899999999999999999887 7999999999999999887531 12 7999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.++|+.+.....++||+|++..+++|+. +++.++|+|| .+++.+++..
T Consensus 121 ~~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 121 ILGDGTLGYEEEKPYDRVVVWATAPTLL--------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp EESCGGGCCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEECSSS
T ss_pred EECCcccccccCCCccEEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCCC
Confidence 9999987433467899999999999998 2478899999 7777777654
No 94
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.32 E-value=7.9e-12 Score=133.63 Aligned_cols=107 Identities=20% Similarity=0.099 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... +...++++..+|+. .+.+.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~-~~~p~ 234 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDT-----------GLSGRAQVVVGSFF-DPLPA 234 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEECCTT-SCCCC
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhc-----------CcCcCeEEecCCCC-CCCCC
Confidence 46899999999999999998866 3478999999 99999998876531 22358999999997 33333
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+||+|++..++||++++....+.+++.+.|+|| .++|..+.
T Consensus 235 -~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 235 -GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred -CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 899999999999999776677778899999999 77776654
No 95
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.31 E-value=5.8e-12 Score=127.99 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--C
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL--p 788 (951)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|+++... ...+++++++|+.++ +
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~-------------~~~~v~~~~~d~~~~~~~ 123 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR-------------QTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG-------------CSSEEEEEESCHHHHGGG
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHh-------------cCCCeEEEecCHHHhhcc
Confidence 4678999999999999999988662 5899999999999999886531 125799999999988 7
Q ss_pred CCCCCccEEEE-cccc--ccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 789 SRLHGFDIGTC-LEVI--EHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 789 ~~d~sFDlVVc-ieVL--EHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+.+++||+|++ ...+ ++........+.+++.++|||| .+++..
T Consensus 124 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 124 LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 88899999999 5543 2222333445567799999999 555443
No 96
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.31 E-value=3.4e-11 Score=130.28 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=92.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...+..+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... +...++++..+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 247 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEK-----------GVADRMRGIAV 247 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhc-----------CCCCCEEEEeC
Confidence 45555555677899999999999999999876 3479999999 99999999876531 12236999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+.+.+++. +|+|++..++||++++....+.+++.++|+|| .++|..+
T Consensus 248 d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 248 DIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred ccccCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 998876543 49999999999999776777778899999998 6666554
No 97
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=9.3e-12 Score=123.77 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+...++.+|||||||+|.++..+++..++..+|+|+|+++.+++.|++++... +..++++.
T Consensus 66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------~~~~v~~~ 133 (215)
T 2yxe_A 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL------------GYDNVIVI 133 (215)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------------TCTTEEEE
T ss_pred HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------------CCCCeEEE
Confidence 345666666678889999999999999999887633469999999999999999876521 23469999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
++|+.........||+|++..+++|++ +.+.++|||| .+++.+++..
T Consensus 134 ~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~~ 181 (215)
T 2yxe_A 134 VGDGTLGYEPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRYL 181 (215)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSSS
T ss_pred ECCcccCCCCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCCC
Confidence 999865433367899999999999998 2588999998 7777777653
No 98
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.30 E-value=8.8e-12 Score=119.60 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+........+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++... +..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~-----------~~~ 81 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRH-----------GLG 81 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHT-----------TCC
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHc-----------CCC
Confidence 4444555667777777788999999999999999999887 79999999999999998876421 112
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.++++.++|+.+.......||+|++..+++|+. .+.+.+.++|+|| .+++.+++
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 82 DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQ-----EILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp TTEEEEESCHHHHHTTSCCEEEEEESCCTTCHH-----HHHHHHHHTEEEEEEEEEEECB
T ss_pred cceEEEecCHHHhcccCCCCCEEEECCchHHHH-----HHHHHHHHhcCCCcEEEEEecC
Confidence 579999999877212225899999998887653 4456799999999 77776664
No 99
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.30 E-value=4.7e-11 Score=130.40 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... +...++++..+
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~l~~~v~~~~~ 259 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGR-----------GLADRCEILPG 259 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhc-----------CcCCceEEecc
Confidence 34444455567899999999999999999876 4479999999 99999999876531 22357999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+. .+.+. +||+|++..++||++++....+.+++.+.|+|| .++|..+
T Consensus 260 d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 260 DFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 998 34443 899999999999999777667778899999998 6666554
No 100
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.30 E-value=2.6e-11 Score=122.07 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=88.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc-cEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLF 780 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~-nVtf~ 780 (951)
..+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+++++.|++++.. .+.. +++++
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~------------~g~~~~v~~~ 109 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDT------------YGLSPRMRAV 109 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTCTTTEEEE
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCCCEEEE
Confidence 456667777788999999999999999999885 7999999999999999987652 2333 79999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++|+.+.......||+|++...+ +. . +.+++.++|||| .+++.+++
T Consensus 110 ~~d~~~~~~~~~~~D~v~~~~~~-----~~-~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 110 QGTAPAALADLPLPEAVFIGGGG-----SQ-A-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp ESCTTGGGTTSCCCSEEEECSCC-----CH-H-HHHHHHHHSCTTCEEEEEECS
T ss_pred eCchhhhcccCCCCCEEEECCcc-----cH-H-HHHHHHHhcCCCcEEEEEecC
Confidence 99998844445689999987754 22 2 556799999999 77777765
No 101
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=2e-11 Score=116.52 Aligned_cols=115 Identities=11% Similarity=0.136 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+......+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~~ 82 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK------------FNI 82 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHH------------TTC
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------cCC
Confidence 4445555677777777788899999999999999999843 7999999999999999987652 233
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.++++.++|+.+ +++.+.||+|++..+ ++ . ..+.+.+.++ || .+++.+++
T Consensus 83 ~~~~~~~~d~~~-~~~~~~~D~i~~~~~-~~----~-~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 83 KNCQIIKGRAED-VLDKLEFNKAFIGGT-KN----I-EKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp CSEEEEESCHHH-HGGGCCCSEEEECSC-SC----H-HHHHHHHHHT--TCCEEEEEESC
T ss_pred CcEEEEECCccc-cccCCCCcEEEECCc-cc----H-HHHHHHHhhC--CCCEEEEEecc
Confidence 579999999987 555678999999988 22 2 2444557777 76 78887765
No 102
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.28 E-value=2e-11 Score=131.48 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=91.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... +...++++..+
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 240 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDE-----------GLSDRVDVVEG 240 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 34555555677899999999999999999876 3478999999 99999998876531 12237999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+ +.+ .+||+|++..++||++++....+.+++.++|+|| .++|..+.
T Consensus 241 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 241 DFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCC-CCC-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9976 222 2499999999999999776666777899999999 67776554
No 103
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.26 E-value=2.9e-11 Score=123.41 Aligned_cols=120 Identities=9% Similarity=0.096 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002222 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
.|.......+++...+...++.+|||||||+|..+..|++.. +..+|+|+|+++.+++.|++++... +
T Consensus 52 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-----------~ 119 (232)
T 3ntv_A 52 VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATY-----------H 119 (232)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHT-----------T
T ss_pred CCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------C
Confidence 344445555566666666688999999999999999999854 3479999999999999999877531 1
Q ss_pred CCccEEEEEccccccC--CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 773 DVKSAVLFDGSITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp--~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
...+++++++|+.+.. ...+.||+|++....++. ..+.+.+.++|||| .+++
T Consensus 120 ~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~-----~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 120 FENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQS-----KKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp CTTTEEEEESCGGGCHHHHTTSCEEEEEEETTSSSH-----HHHHHHHGGGEEEEEEEEE
T ss_pred CCCcEEEEECCHHHHHHhhccCCccEEEEcCcHHHH-----HHHHHHHHHhcCCCeEEEE
Confidence 2247999999997743 235789999976543332 34556799999999 5554
No 104
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.26 E-value=2.9e-11 Score=128.93 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+.+.+...+ .+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++.... ...++++..
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~-----------~~~~v~~~~ 223 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLL-----------AGERVSLVG 223 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHH-----------HTTSEEEEE
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcC-----------CCCcEEEec
Confidence 34444444445 899999999999999998875 3469999999 999999988754211 124799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+|+.+ +.+ .+||+|++..++||++++....+.+++.+.|+|| .++|..+
T Consensus 224 ~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 224 GDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99987 444 6799999999999999777677778899999998 7777654
No 105
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.26 E-value=6.6e-12 Score=128.91 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
|..+.-|..+...+. ++.+|||+|||+|-++..++... +..+|+|+|+|+.|++.+++++.. .+.
T Consensus 34 p~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~------------~g~ 98 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGK------------LKT 98 (200)
T ss_dssp GGHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHH------------SCC
T ss_pred HhHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh------------cCC
Confidence 445555677777773 57899999999999999998876 346999999999999999988652 233
Q ss_pred c-cEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002222 775 K-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 775 ~-nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
. ++++ +|.... ...+.||+|+...+|||+ ++....+. .+++.|+||+++|+-|-
T Consensus 99 ~~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL-~~~~~al~-~v~~~L~pggvfISfpt 153 (200)
T 3fzg_A 99 TIKYRF--LNKESD-VYKGTYDVVFLLKMLPVL-KQQDVNIL-DFLQLFHTQNFVISFPI 153 (200)
T ss_dssp SSEEEE--ECCHHH-HTTSEEEEEEEETCHHHH-HHTTCCHH-HHHHTCEEEEEEEEEEC
T ss_pred CccEEE--eccccc-CCCCCcChhhHhhHHHhh-hhhHHHHH-HHHHHhCCCCEEEEeCh
Confidence 3 5666 555444 345789999999999999 56655665 59999999999999884
No 106
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.26 E-value=2.7e-11 Score=121.33 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+..+++++++|+.+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~ 106 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLE------------VGVPNIKLLWVDGSDLTDY 106 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------HCCSSEEEEECCSSCGGGT
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHH------------cCCCCEEEEeCCHHHHHhh
Confidence 357899999999999999999875 347999999999999999887652 13358999999999876
Q ss_pred CCCCCccEEEEccccccCchh------HHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 789 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+..+.||+|++.....+.... ....+.+.+.++|+|| .+++.+.+.++
T Consensus 107 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (214)
T 1yzh_A 107 FEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL 161 (214)
T ss_dssp SCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred cCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence 567789999998765433211 1134556799999999 78888776443
No 107
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.26 E-value=1.9e-11 Score=123.63 Aligned_cols=113 Identities=9% Similarity=0.072 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
..+.+|||||||+|.++..|++.. +..+|+|||+|+.+++.|++++.. .+..++.++++|+.+++
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~------------~~~~nv~~~~~d~~~l~~~ 103 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD------------SEAQNVKLLNIDADTLTDV 103 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH------------SCCSSEEEECCCGGGHHHH
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHH------------cCCCCEEEEeCCHHHHHhh
Confidence 356799999999999999999875 347999999999999999887642 23457999999998876
Q ss_pred CCCCCccEEEEccccccCchh------HHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 789 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+..+.||.|++.....|.... ....+.+++.++|||| .+++.|.+.++
T Consensus 104 ~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~ 158 (213)
T 2fca_A 104 FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL 158 (213)
T ss_dssp CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred cCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 567889999876544332210 0135566799999999 88888876543
No 108
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.25 E-value=1.1e-10 Score=117.27 Aligned_cols=147 Identities=11% Similarity=0.066 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-C
Q 002222 711 SCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D 788 (951)
Q Consensus 711 ~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p 788 (951)
.++.+|||+||| +|.++..+++.. ..+|+|+|+|+.+++.|++++.. .+. +++++++|+..+ +
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~------------~~~-~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIER------------NNS-NVRLVKSNGGIIKG 118 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHH------------TTC-CCEEEECSSCSSTT
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHH------------hCC-CcEEEeCCchhhhh
Confidence 467899999999 999999999873 17999999999999999987652 223 799999997544 3
Q ss_pred CCCCCccEEEEccccccCchh-----------------HHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCC
Q 002222 789 SRLHGFDIGTCLEVIEHMEED-----------------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQED 850 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD-----------------~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~e 850 (951)
...+.||+|++.-.+.+.... ....+.+.+.++|||| .+++.+|...
T Consensus 119 ~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------- 183 (230)
T 3evz_A 119 VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE--------------- 183 (230)
T ss_dssp TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------
T ss_pred cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------
Confidence 345789999998666554421 1245667799999999 6777666521
Q ss_pred CCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecC
Q 002222 851 DPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSR 917 (951)
Q Consensus 851 YPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~ 917 (951)
...+++. ..+.++||.++......+ .....+.+|.|.
T Consensus 184 ---------------------~~~~~~~----~~l~~~g~~~~~~~~~~g-----~~~~~~l~f~~~ 220 (230)
T 3evz_A 184 ---------------------KLLNVIK----ERGIKLGYSVKDIKFKVG-----TRWRHSLIFFKG 220 (230)
T ss_dssp ---------------------HHHHHHH----HHHHHTTCEEEEEEECCC-----C-CEEEEEEECC
T ss_pred ---------------------hHHHHHH----HHHHHcCCceEEEEecCC-----CeEEEEEEEecc
Confidence 0112333 356678998877655431 225788999983
No 109
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.25 E-value=4e-12 Score=124.45 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 695 PLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 695 PL~~QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
|......+.+.+.+.. .++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|++++.. .+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~------------~~ 78 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER------------FG 78 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC---------------------------
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH------------hC
Confidence 3445556667777665 677899999999999999999885 347999999999999999876542 12
Q ss_pred CccEEEEEccccccCCCC-----CCccEEEEc------cccccCchhHH------------------HHHHHHHHHccCC
Q 002222 774 VKSAVLFDGSITVFDSRL-----HGFDIGTCL------EVIEHMEEDEA------------------SQFGNIVLSSFRP 824 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d-----~sFDlVVci------eVLEHL~dD~l------------------~~L~eeL~RvLKP 824 (951)
. ++++.++|+.+ ++.. ++||+|++. ..++|+..+.. ..+.+.+.++|||
T Consensus 79 ~-~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 156 (215)
T 4dzr_A 79 A-VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR 156 (215)
T ss_dssp -----CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS
T ss_pred C-ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC
Confidence 2 78899999987 4444 899999995 44555553322 4566678999999
Q ss_pred C-E-EEEEecCCc
Q 002222 825 R-I-LIVSTPNYE 835 (951)
Q Consensus 825 G-v-LIISTPNsE 835 (951)
| . +++..+...
T Consensus 157 gG~l~~~~~~~~~ 169 (215)
T 4dzr_A 157 GRAGVFLEVGHNQ 169 (215)
T ss_dssp SSEEEEEECTTSC
T ss_pred CCeEEEEEECCcc
Confidence 9 6 666665443
No 110
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.25 E-value=2.2e-11 Score=130.37 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+.....+.+.+...++.+|||||||+|.++..+++.+....+|+|+|+|+++++.|++++.. .+..++
T Consensus 61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~g~~~v 128 (317)
T 1dl5_A 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER------------LGIENV 128 (317)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH------------TTCCSE
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCCe
Confidence 34556777777777889999999999999999998763235699999999999999987652 233469
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++.++|+.+.....+.||+|++..+++|+. +.+.+.|||| .++++...
T Consensus 129 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 129 IFVCGDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEESCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred EEEECChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 999999988655567899999999999998 3578899999 66666544
No 111
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.25 E-value=9.7e-12 Score=127.09 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-C--
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D-- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p-- 788 (951)
.+.+|||||||+|.++..+++.. +...|+|||+|+.+++.|++++.. .+..++.++++|+.++ +
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~------------~~l~nv~~~~~Da~~~l~~~ 100 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHE------------EGLSNLRVMCHDAVEVLHKM 100 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH------------TTCSSEEEECSCHHHHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHH------------hCCCcEEEEECCHHHHHHHH
Confidence 56799999999999999999876 347899999999999999887642 2445899999999884 3
Q ss_pred CCCCCccEEEEccccccCchhHH------HHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDEA------SQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l------~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
+.+++||.|++.....+...... ..+.+.+.++|||| .+++.|.+.+|...
T Consensus 101 ~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~ 158 (218)
T 3dxy_A 101 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEH 158 (218)
T ss_dssp SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHH
Confidence 56789999998854443321111 13667799999999 88888887666543
No 112
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.24 E-value=2.4e-11 Score=117.25 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 698 KQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 698 ~QR~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
..-.+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++... +...+
T Consensus 16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~ 82 (177)
T 2esr_A 16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMT-----------KAENR 82 (177)
T ss_dssp --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTT-----------TCGGG
T ss_pred HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHc-----------CCCCc
Confidence 333445666665 4567899999999999999999875 269999999999999999876521 11247
Q ss_pred EEEEEccccc-cCCCCCCccEEEEccccccCchhHHHHHHHHHH--HccCCC-EEEEEecCCc
Q 002222 777 AVLFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 777 Vtf~qGDa~d-Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~--RvLKPG-vLIISTPNsE 835 (951)
++++++|+.+ ++.....||+|++...+++ .....+.+.+. ++|+|| .+++.++..+
T Consensus 83 ~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 83 FTLLKMEAERAIDCLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp EEEECSCHHHHHHHBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred eEEEECcHHHhHHhhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 9999999987 3434567999999866532 11223334455 899999 7777777654
No 113
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.24 E-value=1.6e-11 Score=122.87 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=86.1
Q ss_pred HHHHHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC--ccE
Q 002222 701 VEYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSA 777 (951)
Q Consensus 701 ~e~VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~--~nV 777 (951)
.+.+.+.+... ++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++.. .+. .++
T Consensus 41 ~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~------------~~~~~~~v 106 (201)
T 2ift_A 41 KETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQT------------LKCSSEQA 106 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH------------TTCCTTTE
T ss_pred HHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHH------------hCCCccce
Confidence 33444544432 678999999999999998777652 6899999999999999987652 222 489
Q ss_pred EEEEccccccCCC--CCC-ccEEEEccccccCchhHHHHHHHHH--HHccCCC-EEEEEecCCc
Q 002222 778 VLFDGSITVFDSR--LHG-FDIGTCLEVIEHMEEDEASQFGNIV--LSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 778 tf~qGDa~dLp~~--d~s-FDlVVcieVLEHL~dD~l~~L~eeL--~RvLKPG-vLIISTPNsE 835 (951)
+++++|+.++... .+. ||+|++...++ .. +. ..+.+.+ .++|+|| .++++++...
T Consensus 107 ~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~-~~-~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 107 EVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FN-LA-EQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EEECSCHHHHTTSCCSSCCEEEEEECCCSS-SC-HH-HHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred EEEECCHHHHHHhhccCCCCCEEEECCCCC-Cc-cH-HHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 9999999876433 568 99999987743 33 32 3344456 5689999 7777776644
No 114
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.23 E-value=2.7e-11 Score=124.57 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--C
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL--p 788 (951)
.++.+|||||||.|..+..+++..+ .+|+|||+|+.+++.|+++.. ....++.++.+++.+. +
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~-------------~~~~~~~~~~~~a~~~~~~ 123 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAP-------------RQTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGG-------------GCSSEEEEEESCHHHHGGG
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHh-------------hCCCceEEEeehHHhhccc
Confidence 4678999999999999999998763 789999999999999988653 2335789999998764 4
Q ss_pred CCCCCccEEEE-----ccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 789 SRLHGFDIGTC-----LEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 789 ~~d~sFDlVVc-----ieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
+.+++||.|+. .++++|+. +. ..+.++++|+|||| .+++
T Consensus 124 ~~~~~FD~i~~D~~~~~~~~~~~~-~~-~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 124 LPDGHFDGILYDTYPLSEETWHTH-QF-NFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTH-HH-HHHHHTHHHHEEEEEEEEE
T ss_pred ccccCCceEEEeeeecccchhhhc-ch-hhhhhhhhheeCCCCEEEE
Confidence 56788999974 56677777 33 34556799999999 4444
No 115
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.22 E-value=4.1e-11 Score=123.96 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc-cC-
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FD- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d-Lp- 788 (951)
.+..+|||||||+|.++..|++.. +...|+|||+|+.|++.|++++...... ...+..++.++++|+.+ ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~------~~~~~~nv~~~~~d~~~~l~~ 117 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAA------PAGGFQNIACLRSNAMKHLPN 117 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHS------TTCCCTTEEEEECCTTTCHHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHH------HhcCCCeEEEEECcHHHhhhh
Confidence 356789999999999999999875 3478999999999999998775431100 01234689999999987 66
Q ss_pred -CCCCCccEEEEccccccCchhH------HHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002222 789 -SRLHGFDIGTCLEVIEHMEEDE------ASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 789 -~~d~sFDlVVcieVLEHL~dD~------l~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
+..++||.|++...-.|..... ...+.+++.++|||| .+++.|.+.++...
T Consensus 118 ~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~ 176 (235)
T 3ckk_A 118 FFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDW 176 (235)
T ss_dssp HCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred hCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence 6678999998754433321000 024667799999999 78888888665543
No 116
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.21 E-value=4.9e-11 Score=129.94 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=83.8
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++++|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++... +...+++++++|+.+++
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~ 128 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKAN-----------KLDHVVTIIKGKVEEVE 128 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHT-----------TCTTTEEEEESCTTTCC
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHc-----------CCCCcEEEEECcHHHcc
Confidence 345788999999999999999999862 6999999995 999998876531 22335999999999998
Q ss_pred CCCCCccEEEEccccccCc-hhHHHHHHHHHHHccCCCEEEE
Q 002222 789 SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~-dD~l~~L~eeL~RvLKPGvLII 829 (951)
++.++||+|++..+.+++. .+....+.+.+.++||||+.++
T Consensus 129 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 129 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 8888999999977655542 2334456667899999994443
No 117
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.21 E-value=4.4e-11 Score=121.63 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=90.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+...++.+|||||||+|.++..+++.++ .+|+|+|+++.+++.|++++.. .+..++++.
T Consensus 80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~~ 145 (235)
T 1jg1_A 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER------------AGVKNVHVI 145 (235)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHH------------TTCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCCcEEE
Confidence 34566666667788999999999999999998763 6899999999999999987652 233469999
Q ss_pred EccccccCCCC-CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 781 DGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 781 qGDa~dLp~~d-~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
.+|+ ..++.. ..||+|++..+++|+. +.+.+.|+|| .+++++++...
T Consensus 146 ~~d~-~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~pgG~lvi~~~~~~~ 194 (235)
T 1jg1_A 146 LGDG-SKGFPPKAPYDVIIVTAGAPKIP--------EPLIEQLKIGGKLIIPVGSYHL 194 (235)
T ss_dssp ESCG-GGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEECSSSS
T ss_pred ECCc-ccCCCCCCCccEEEECCcHHHHH--------HHHHHhcCCCcEEEEEEecCCC
Confidence 9998 334433 3599999999999998 2478899999 88888887654
No 118
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.21 E-value=6.2e-11 Score=116.29 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=83.0
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++... +...+++++++|+.+++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~ 88 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-----------NLIDRVTLIKDGHQNMDK 88 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-----------TCGGGEEEECSCGGGGGG
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCeEEEECCHHHHhh
Confidence 346789999999999999999887323369999999999999999876531 11258999999998876
Q ss_pred CCCCCccEEEEcccc-c-----c-CchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 789 SRLHGFDIGTCLEVI-E-----H-MEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 789 ~~d~sFDlVVcieVL-E-----H-L~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
...+.||+|++...+ . + ...+....+.+++.++|||| .+++.+.
T Consensus 89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 456789999987654 1 0 11122334556799999998 6665543
No 119
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.21 E-value=1.6e-11 Score=116.59 Aligned_cols=116 Identities=10% Similarity=0.028 Sum_probs=84.8
Q ss_pred HHHHHHHHhhc-C-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 700 RVEYALQHIKE-S-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 700 R~e~VldlL~~-~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
..+.+.+.+.. . ++.+|||+|||+|.++..+++.+ ..|+|+|+|+.+++.|++++... +. ++
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~------------~~-~~ 90 (171)
T 1ws6_A 27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRT------------GL-GA 90 (171)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHH------------TC-CC
T ss_pred HHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHc------------CC-ce
Confidence 33445555544 2 67899999999999999999987 45999999999999999876521 22 78
Q ss_pred EEEEcccccc-CC---CCCCccEEEEccccccCchhHHHHHHHHHH--HccCCC-EEEEEecCCc
Q 002222 778 VLFDGSITVF-DS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 778 tf~qGDa~dL-p~---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~--RvLKPG-vLIISTPNsE 835 (951)
+++++|+.+. +. ...+||+|++...++...++.. +.+. ++|+|| .+++.+++.+
T Consensus 91 ~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~----~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 91 RVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALF----GELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHH----HHHHHHTCEEEEEEEEEEEETTS
T ss_pred EEEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHH----HHHHhhcccCCCcEEEEEeCCcc
Confidence 9999999773 21 1347999999877652221222 3344 999998 7778887654
No 120
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.21 E-value=3.3e-11 Score=119.17 Aligned_cols=102 Identities=20% Similarity=0.147 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+..++++.++|+.+..
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~-- 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAAL------------NGIYDIALQKTSLLADV-- 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCCCEEEESSTTTTC--
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCceEEEeccccccC--
Confidence 4678999999999999999998752 6999999999999999987652 22334999999997653
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+.||+|++..+++|+. .+.+++.++|+|| .+++.++.
T Consensus 123 ~~~fD~i~~~~~~~~~~-----~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 123 DGKFDLIVANILAEILL-----DLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp CSCEEEEEEESCHHHHH-----HHGGGSGGGEEEEEEEEEEEEE
T ss_pred CCCceEEEECCcHHHHH-----HHHHHHHHhcCCCCEEEEEecC
Confidence 57899999998887753 4556799999999 66665443
No 121
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.20 E-value=6e-11 Score=129.06 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=88.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++... +...++++++
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~-----------~l~~~v~~~~ 105 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSN-----------NLTDRIVVIP 105 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 4455666666889999999999999999998762 6999999996 888888776421 1225799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+|+.+++.+ .+||+|++..+++|+..+........+.++|||| .+++..
T Consensus 106 ~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 106 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp SCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred cchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 999988754 5799999999999987554333334689999999 555443
No 122
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.19 E-value=4.6e-11 Score=115.23 Aligned_cols=123 Identities=12% Similarity=0.018 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 697 SKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 697 ~~QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
.....+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... +...
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~ 94 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAIT-----------KEPE 94 (187)
T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHH-----------TCGG
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHh-----------CCCc
Confidence 33444556666643 4678999999999999998888652 69999999999999999876531 1124
Q ss_pred cEEEEEccccccCC----CCCCccEEEEccccccCchhHHHHHHHHH--HHccCCC-EEEEEecCCc
Q 002222 776 SAVLFDGSITVFDS----RLHGFDIGTCLEVIEHMEEDEASQFGNIV--LSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 776 nVtf~qGDa~dLp~----~d~sFDlVVcieVLEHL~dD~l~~L~eeL--~RvLKPG-vLIISTPNsE 835 (951)
+++++++|+.+... ....||+|++...+++...+. . .+.+ .++|+|| .+++.+++..
T Consensus 95 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~--~-~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 95 KFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVS--Q-LEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHH--H-HHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHH--H-HHHHHHhcccCCCCEEEEEeCCcc
Confidence 79999999977432 257899999987754322122 2 2334 8899999 7777877753
No 123
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.18 E-value=6.6e-11 Score=118.83 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=88.3
Q ss_pred HHHHHh--hcCCCCEEEEEcCccchhHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 703 YALQHI--KESCATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 703 ~VldlL--~~~k~krVLDIGCGeG~ll~~LAk~g~----~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
.+.+.+ ...++.+|||||||+|.++..+++... +..+|+|+|+++.+++.|++++...... .....+
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------~~~~~~ 141 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-------LLKIDN 141 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-------GGSSTT
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-------ccccCC
Confidence 444544 245678999999999999999988753 3359999999999999999876532100 001347
Q ss_pred EEEEEccccccC----CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 777 AVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 777 Vtf~qGDa~dLp----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+++.++|+.+.. .....||+|++...++|+. +.+.+.|+|| .++++++.
T Consensus 142 v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 142 FKIIHKNIYQVNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred EEEEECChHhcccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 999999998765 4567899999999999986 4578899998 77777764
No 124
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.18 E-value=1.3e-10 Score=116.20 Aligned_cols=119 Identities=12% Similarity=-0.005 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
....+++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...++
T Consensus 50 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v 118 (225)
T 3tr6_A 50 PEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA-----------GLSDKI 118 (225)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCce
Confidence 333344544555557889999999999999999987432479999999999999999887531 122469
Q ss_pred EEEEccccccC-C-CC----CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 778 VLFDGSITVFD-S-RL----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 778 tf~qGDa~dLp-~-~d----~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+++++|+.+.. . .. ++||+|++.... .....+.+.+.++|+|| .+++...
T Consensus 119 ~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 119 GLRLSPAKDTLAELIHAGQAWQYDLIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEESCHHHHHHHHHTTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEeCCHHHHHHHhhhccCCCCccEEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99999996542 1 11 789999965542 22234556799999999 5555433
No 125
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.18 E-value=1.7e-10 Score=128.03 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+ .+++++++|+.+....
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~------------~~-~~v~~~~~D~~~~~~~ 295 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEA------------NA-LKAQALHSDVDEALTE 295 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHH------------TT-CCCEEEECSTTTTSCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cC-CCeEEEEcchhhcccc
Confidence 467899999999999999999986 6999999999999999987652 12 2489999999988776
Q ss_pred CCCccEEEEcccccc---CchhHHHHHHHHHHHccCCC-EEEEEe-cCCchhHHHHh
Q 002222 791 LHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVST-PNYEYNAILQK 842 (951)
Q Consensus 791 d~sFDlVVcieVLEH---L~dD~l~~L~eeL~RvLKPG-vLIIST-PNsEfN~lf~~ 842 (951)
.+.||+|++...++| +..+....+.+++.++|||| .+++.+ +...|...+..
T Consensus 296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~ 352 (381)
T 3dmg_A 296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEE 352 (381)
T ss_dssp TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHH
T ss_pred CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHH
Confidence 789999999999888 33455566677899999999 555544 34445544443
No 126
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.18 E-value=2.7e-10 Score=114.02 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+..-+++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...++
T Consensus 44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v 112 (223)
T 3duw_A 44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA-----------NLNDRV 112 (223)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 333344444445567899999999999999999988532479999999999999999876531 122469
Q ss_pred EEEEccccccCCC-----CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 778 VLFDGSITVFDSR-----LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 778 tf~qGDa~dLp~~-----d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+++++|+.+.... ...||+|++....++. ..+.+.+.++|+|| .+++..+
T Consensus 113 ~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~~-----~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 113 EVRTGLALDSLQQIENEKYEPFDFIFIDADKQNN-----PAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEEESCHHHHHHHHHHTTCCCCSEEEECSCGGGH-----HHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHHH-----HHHHHHHHHhcCCCcEEEEeCC
Confidence 9999999764221 2579999987653332 34556799999999 6665544
No 127
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.18 E-value=1.3e-10 Score=125.78 Aligned_cols=106 Identities=18% Similarity=0.087 Sum_probs=81.3
Q ss_pred HHhhcCCCCEEEEEcCccchhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccc
Q 002222 706 QHIKESCATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 784 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGeG~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa 784 (951)
.++...++.+|||||||+|.++ ..+++..+ .+|+|||+|++|++.|++++... +..++++.++|+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~------------gl~~v~~v~gDa 181 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL------------GVDGVNVITGDE 181 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHH------------TCCSEEEEESCG
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhc------------CCCCeEEEECch
Confidence 3556678899999999999876 44555432 79999999999999999876531 226899999999
Q ss_pred cccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 785 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 785 ~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+++ +++||+|++... ++ +. ..+.+++.++|||| .+++...
T Consensus 182 ~~l~--d~~FDvV~~~a~---~~-d~-~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 182 TVID--GLEFDVLMVAAL---AE-PK-RRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp GGGG--GCCCSEEEECTT---CS-CH-HHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhCC--CCCcCEEEECCC---cc-CH-HHHHHHHHHHcCCCcEEEEEcC
Confidence 9876 689999998655 23 43 34456799999999 6666554
No 128
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.17 E-value=1.2e-10 Score=117.40 Aligned_cols=122 Identities=7% Similarity=0.100 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
.+.+...+++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +..
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~ 109 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA-----------GLQ 109 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------TCG
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc-----------CCC
Confidence 444445555666666667899999999999999999986433479999999999999999876532 122
Q ss_pred ccEEEEEcccccc-CCCC-----CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 775 KSAVLFDGSITVF-DSRL-----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 775 ~nVtf~qGDa~dL-p~~d-----~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.+++++++|+.+. +... +.||+|++....+|.. +....+ +.+ ++|||| .+++.
T Consensus 110 ~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~-~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 110 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYL-PDTLLL-EKC-GLLRKGTVLLAD 169 (221)
T ss_dssp GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHH-HHHHHH-HHT-TCCCTTCEEEES
T ss_pred CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccch-HHHHHH-Hhc-cccCCCeEEEEe
Confidence 4699999998663 3222 6899999988877776 333333 345 999999 55553
No 129
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.17 E-value=1.2e-10 Score=118.67 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
.+...+++...+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...+
T Consensus 45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~ 113 (239)
T 2hnk_A 45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN-----------GLENK 113 (239)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCGGG
T ss_pred CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCC
Confidence 3334445555555567889999999999999999987422479999999999999999876531 12235
Q ss_pred EEEEEcccccc-C--------------CC-C-CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002222 777 AVLFDGSITVF-D--------------SR-L-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 838 (951)
Q Consensus 777 Vtf~qGDa~dL-p--------------~~-d-~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~ 838 (951)
+++.++|+.+. + +. . +.||+|++....+++. .+.+.+.++|+|| .+++.+.. +..
T Consensus 114 v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~-----~~l~~~~~~L~pgG~lv~~~~~--~~g 186 (239)
T 2hnk_A 114 IFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP-----NYYPLILKLLKPGGLLIADNVL--WDG 186 (239)
T ss_dssp EEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHH-----HHHHHHHHHEEEEEEEEEECSS--GGG
T ss_pred EEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHH-----HHHHHHHHHcCCCeEEEEEccc--cCC
Confidence 99999998663 2 11 2 7899999886654443 4456799999999 55554332 111
Q ss_pred HHHhhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002222 839 ILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 899 (951)
Q Consensus 839 lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~ 899 (951)
. ...+++ .......++.+.+.+.....+.+.+..+|+
T Consensus 187 ~-----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 223 (239)
T 2hnk_A 187 S-----------------------VADLSH-QEPSTVGIRKFNELVYNDSLVDVSLVPIAD 223 (239)
T ss_dssp G-----------------------GGCTTC-CCHHHHHHHHHHHHHHHCTTEEEEEECSTT
T ss_pred c-----------------------ccCccc-cchHHHHHHHHHHHHhhCCCeEEEEEEcCC
Confidence 0 001111 112344555665566666789988888875
No 130
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.17 E-value=1.1e-10 Score=117.20 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=88.4
Q ss_pred HHHHHhh--cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 703 YALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 703 ~VldlL~--~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+.+. ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++...... ..+..++++.
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------~~~~~~v~~~ 138 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-------LLSSGRVQLV 138 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-------HHHTSSEEEE
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-------ccCCCcEEEE
Confidence 3444444 456789999999999999999876423369999999999999998876531000 0012479999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++|+.........||+|++...++|+. +.+.++|||| .++++++..
T Consensus 139 ~~d~~~~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 139 VGDGRMGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred ECCcccCcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 999987665567899999999999887 3578999999 777777643
No 131
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.17 E-value=6e-11 Score=118.82 Aligned_cols=119 Identities=10% Similarity=0.031 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 698 KQRVEYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 698 ~QR~e~VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
..-.+.+.+.+... ++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++.. .+..+
T Consensus 39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~------------~~~~~ 104 (202)
T 2fpo_A 39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLAT------------LKAGN 104 (202)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH------------TTCCS
T ss_pred HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCc
Confidence 33444555555442 678999999999999998777662 5899999999999999987652 22358
Q ss_pred EEEEEccccc-cCCCCCCccEEEEccccccCchhHHHHHHHHHHH--ccCCC-EEEEEecC
Q 002222 777 AVLFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS--SFRPR-ILIVSTPN 833 (951)
Q Consensus 777 Vtf~qGDa~d-Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~R--vLKPG-vLIISTPN 833 (951)
++++++|+.+ ++.....||+|++...++ .. .. ..+.+.+.+ +|+|| .+++++..
T Consensus 105 v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~~-~~-~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 105 ARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RG-LL-EETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEEECSCHHHHHSSCCCCEEEEEECCSSS-TT-TH-HHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEEEECCHHHHHhhcCCCCCEEEECCCCC-CC-cH-HHHHHHHHhcCccCCCcEEEEEECC
Confidence 9999999987 455567899999976633 22 22 233344654 59998 66666654
No 132
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.17 E-value=8.8e-11 Score=126.91 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=83.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...+..+|||||||+|.++..+++.. +..+++++|++ .++. +++... .+...++++..+
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~--~~~~~~-----------~~~~~~v~~~~~ 239 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA--RHRLDA-----------PDVAGRWKVVEG 239 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT--TCCCCC-----------GGGTTSEEEEEC
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh--cccccc-----------cCCCCCeEEEec
Confidence 34444455567899999999999999998876 34789999994 4444 221110 122357999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+. .+.+ +||+|++..++||+++++...+.+++.++|||| .++|..+
T Consensus 240 d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 240 DFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp CTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 996 2333 899999999999999776667777899999999 7777654
No 133
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.17 E-value=2.1e-10 Score=124.73 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+++.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++... +...++++++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~-----------~~~~~i~~~~ 119 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLN-----------KLEDTITLIK 119 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 4455555566788999999999999999998862 5999999997 999998876531 1225899999
Q ss_pred ccccccCCCCCCccEEEEccc---cccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 782 GSITVFDSRLHGFDIGTCLEV---IEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieV---LEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
+|+.+++++.++||+|++..+ +.|.. ....+.+++.++||||+.++
T Consensus 120 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 120 GKIEEVHLPVEKVDVIISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCTTTSCCSCSCEEEEEECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred eeHHHhcCCCCcEEEEEEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 999999887789999999764 44433 33455567999999994443
No 134
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.17 E-value=1.2e-10 Score=119.26 Aligned_cols=120 Identities=7% Similarity=-0.029 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHhhcCCCC---EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 694 PPLSKQRVEYALQHIKESCAT---TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~k---rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
|...+..-+++..++...+++ +|||||||+|..+..|++..++..+|+|+|+++++++.|++++...
T Consensus 35 p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------- 104 (221)
T 3dr5_A 35 PAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA---------- 104 (221)
T ss_dssp CCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT----------
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------
Confidence 333343344444444444444 9999999999999999885423479999999999999999887531
Q ss_pred CCCC-ccEEEEEccccccCC--CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 771 CTDV-KSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 771 r~~~-~nVtf~qGDa~dLp~--~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
+.. .+++++++|+.+... ..++||+|++....++. ..+.+.+.++||||++++
T Consensus 105 -g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~~-----~~~l~~~~~~LkpGG~lv 160 (221)
T 3dr5_A 105 -GYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDL-----KALVDAAWPLLRRGGALV 160 (221)
T ss_dssp -TCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTTH-----HHHHHHHHHHEEEEEEEE
T ss_pred -CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHHHH-----HHHHHHHHHHcCCCcEEE
Confidence 122 489999999977532 25789999987554332 245567999999994444
No 135
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.16 E-value=1.2e-10 Score=128.13 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+++.+.+...++++|||||||+|.++..+++.+. .+|+|+|+| .|++.|++++... +...++++++
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~-----------~~~~~v~~~~ 118 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKAN-----------NLDHIVEVIE 118 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHc-----------CCCCeEEEEE
Confidence 3444444556789999999999999999999872 599999999 9999998876531 2234699999
Q ss_pred ccccccCCCCCCccEEEEccccccCch-hHHHHHHHHHHHccCCCEEE
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILI 828 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPGvLI 828 (951)
+|+.+++.+ +.||+|++..+.+++.. .....+.+.+.++||||+++
T Consensus 119 ~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~l 165 (376)
T 3r0q_C 119 GSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM 165 (376)
T ss_dssp SCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEE
T ss_pred CchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEE
Confidence 999998876 88999999665565542 23455666789999999433
No 136
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=1.1e-09 Score=113.13 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=84.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...++++.
T Consensus 52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------g~~~~v~~~ 120 (248)
T 3tfw_A 52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA-----------GVDQRVTLR 120 (248)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-----------TCTTTEEEE
T ss_pred HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 344444445557899999999999999999987533479999999999999999887531 222479999
Q ss_pred Eccccc-cCCC--CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 781 DGSITV-FDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 781 qGDa~d-Lp~~--d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
++|+.+ ++.. ...||+|++...... ...+.+.+.++|||| .+++...
T Consensus 121 ~~d~~~~l~~~~~~~~fD~V~~d~~~~~-----~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 121 EGPALQSLESLGECPAFDLIFIDADKPN-----NPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ESCHHHHHHTCCSCCCCSEEEECSCGGG-----HHHHHHHHHHTCCTTCEEEEECC
T ss_pred EcCHHHHHHhcCCCCCeEEEEECCchHH-----HHHHHHHHHHhcCCCeEEEEeCC
Confidence 999976 3332 348999998654222 234556799999999 6666443
No 137
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.14 E-value=2.8e-10 Score=118.81 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
|..+.-.+.+.+.+. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|+++.... +.
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~------------~~ 158 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHL------------AI 158 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHH------------TC
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------------CC
Confidence 445555566666665 467899999999999999998654 2379999999999999999876421 23
Q ss_pred ccEEEEEccccccCCCCCCccEEEEc-------------cccccCch----------hHHHHHHHHHHHccCCC-EEEEE
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVci-------------eVLEHL~d----------D~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.++++.++|+.+.. ..+.||+|++. ++++|-+. +....+.+.+.++|+|| .+++.
T Consensus 159 ~~v~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 159 KNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CceEEEEcchhhhc-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 47999999997742 35789999997 46666541 23456667799999999 66666
Q ss_pred ecCC
Q 002222 831 TPNY 834 (951)
Q Consensus 831 TPNs 834 (951)
.+..
T Consensus 238 ~~~~ 241 (276)
T 2b3t_A 238 HGWQ 241 (276)
T ss_dssp CCSS
T ss_pred ECch
Confidence 5443
No 138
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.14 E-value=8.1e-11 Score=120.29 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=77.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~- 790 (951)
++.+|||||||+|.++..++... +..+|+|+|+|+.|++.|+++... .+..+++++++|+.++++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~~~~ 136 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEA------------LQLENTTFCHDRAETFGQRK 136 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH------------HTCSSEEEEESCHHHHTTCT
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEeccHHHhcccc
Confidence 67899999999999999988532 237899999999999999887642 1334699999999888753
Q ss_pred --CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 791 --LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 791 --d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
.+.||+|+|..+ . + ...+.+.+.++|+|| .+++
T Consensus 137 ~~~~~fD~V~~~~~----~-~-~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 137 DVRESYDIVTARAV----A-R-LSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp TTTTCEEEEEEECC----S-C-HHHHHHHHGGGEEEEEEEEE
T ss_pred cccCCccEEEEecc----C-C-HHHHHHHHHHhcCCCCEEEE
Confidence 578999999774 2 2 345556799999999 4444
No 139
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.14 E-value=1.9e-10 Score=127.28 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+++++.+....+.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++++..... ....+++++
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl---------~~~~~v~~~ 280 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP---------EALDRCEFM 280 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCG---------GGGGGEEEE
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCC---------CcCceEEEE
Confidence 3466777777777899999999999999999885 347999999999999999987653210 112368999
Q ss_pred EccccccCCCCCCccEEEEcccccc---CchhHHHHHHHHHHHccCCC-EEEEEecC-CchhHHHHh
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVSTPN-YEYNAILQK 842 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEH---L~dD~l~~L~eeL~RvLKPG-vLIISTPN-sEfN~lf~~ 842 (951)
.+|+.+ ++..+.||+|+|...+++ +.......+.+.+.++|||| .+++..+. ..|...+..
T Consensus 281 ~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~ 346 (375)
T 4dcm_A 281 INNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKK 346 (375)
T ss_dssp ECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHH
T ss_pred echhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHH
Confidence 999987 445678999999988875 33344445667899999999 55554443 334444443
No 140
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.14 E-value=2.8e-10 Score=117.79 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred HHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 704 ALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 704 VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
+...+... ++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++... +...+++++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~-----------~~~~~v~~~~~ 106 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYN-----------QLEDQIEIIEY 106 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHT-----------TCTTTEEEECS
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHC-----------CCcccEEEEEC
Confidence 44455555 688999999999999999999873 49999999999999999876521 12246999999
Q ss_pred cccccCC--CCCCccEEEEccccccC------------------chhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 783 SITVFDS--RLHGFDIGTCLEVIEHM------------------EEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 783 Da~dLp~--~d~sFDlVVcieVLEHL------------------~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
|+.+++. ..++||+|++.-.+.+. .......+.+.+.++|||| .+++..+...
T Consensus 107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 180 (259)
T 3lpm_A 107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER 180 (259)
T ss_dssp CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH
Confidence 9998763 46789999996433222 1123456677899999998 6666554433
No 141
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.14 E-value=1.5e-10 Score=130.74 Aligned_cols=129 Identities=15% Similarity=0.074 Sum_probs=94.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhh---hhcccccCC
Q 002222 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK---LSKKLDAAV 769 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~---ls~~~~~l~ 769 (951)
|.++....+..+++.+...++.+|||||||+|.++..++...+ ..+|+|||+|+.+++.|+++.... ....
T Consensus 154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~----- 227 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWY----- 227 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3456666777788888888899999999999999999886542 246999999999999998754311 1100
Q ss_pred CCCCCccEEEEEccccccCCCC--CCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEe
Q 002222 770 PCTDVKSAVLFDGSITVFDSRL--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 770 Pr~~~~nVtf~qGDa~dLp~~d--~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIST 831 (951)
.....+|+|++||+.++++.+ ..||+|++..++ | .++....|. ++++.||||..||++
T Consensus 228 -Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~-Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 228 -GKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLK-ERFANMKEGGRIVSS 287 (438)
T ss_dssp -TBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHH-HHHTTSCTTCEEEES
T ss_pred -CCCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHH-HHHHcCCCCcEEEEe
Confidence 001258999999999988754 479999998775 3 446656665 699999999444443
No 142
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.14 E-value=1.5e-10 Score=125.60 Aligned_cols=132 Identities=11% Similarity=0.000 Sum_probs=101.0
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 691 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
....|+.+.....+.......++.+|||+|||+|.++..++..+.+..+|+|+|+|+.+++.|++++..
T Consensus 182 ~~~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~----------- 250 (354)
T 3tma_A 182 ALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA----------- 250 (354)
T ss_dssp CSSCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH-----------
T ss_pred CCCCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH-----------
Confidence 334466666666777777777888999999999999999888642347899999999999999987653
Q ss_pred CCCCccEEEEEccccccCCCCCCccEEEEcccccc-------CchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 771 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEH-------MEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 771 r~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEH-------L~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.+..++++.++|+.+++.....||+|++.--... +. +....+.+.+.++|+|| .+++.|++.+
T Consensus 251 -~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~-~~~~~~~~~~~~~LkpgG~l~i~t~~~~ 321 (354)
T 3tma_A 251 -SGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLF-HLYWDFLRGALALLPPGGRVALLTLRPA 321 (354)
T ss_dssp -TTCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHH-HHHHHHHHHHHHTSCTTCEEEEEESCHH
T ss_pred -cCCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHH-HHHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence 2333799999999999877788999999533221 11 22255667799999998 8888888753
No 143
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.14 E-value=1.2e-10 Score=118.39 Aligned_cols=122 Identities=13% Similarity=0.152 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+++......+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.... +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-----------g~ 147 (258)
T 2pwy_A 79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW-----------QV 147 (258)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-----------CC
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc-----------CC
Confidence 4444445677777777788999999999999999999872133799999999999999998765210 23
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.++++.++|+.+.++..+.||+|++ +++ +.. .+.+++.++|+|| .+++.+|+.
T Consensus 148 ~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~-~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 148 ENVRFHLGKLEEAELEEAAYDGVAL-----DLM-EPW-KVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CCEEEEESCGGGCCCCTTCEEEEEE-----ESS-CGG-GGHHHHHHHEEEEEEEEEEESCH
T ss_pred CCEEEEECchhhcCCCCCCcCEEEE-----CCc-CHH-HHHHHHHHhCCCCCEEEEEeCCH
Confidence 5799999999988777788999998 344 222 3345799999998 788888764
No 144
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.14 E-value=1.6e-10 Score=117.25 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=76.2
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 787 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-- 787 (951)
..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.|++.+.+.... ..++.++.+|+.+.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~--------------~~~v~~~~~d~~~~~~ 119 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE--------------RNNIIPLLFDASKPWK 119 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH--------------CSSEEEECSCTTCGGG
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc--------------CCCeEEEEcCCCCchh
Confidence 34678999999999999999887653 46899999999988766554321 13688899998774
Q ss_pred --CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 788 --DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 788 --p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
++ .++||+|++. +.++ ++...+.+++.++|||| .+++..+
T Consensus 120 ~~~~-~~~fD~V~~~-~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 120 YSGI-VEKVDLIYQD-IAQK---NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp TTTT-CCCEEEEEEC-CCST---THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccc-ccceeEEEEe-ccCh---hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 33 3789999997 3222 34445456799999999 6666654
No 145
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.13 E-value=1.1e-10 Score=122.12 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC-CC
Q 002222 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT-DV 774 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~-~~ 774 (951)
+++...+.+.+.+...++.+|||+|||+|.++..+++...+..+|+|+|+++.+++.|++++.. . +.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~g~ 161 (275)
T 1yb2_A 94 ISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------------FYDI 161 (275)
T ss_dssp ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------------TSCC
T ss_pred cChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh------------cCCC
Confidence 3333445666777777888999999999999999988611237999999999999999987642 2 34
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.++++.++|+.+ ++..+.||+|++ |+++.. .+.+++.++|||| .+++.+|+.
T Consensus 162 ~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 162 GNVRTSRSDIAD-FISDQMYDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp TTEEEECSCTTT-CCCSCCEEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSH
T ss_pred CcEEEEECchhc-cCcCCCccEEEE-----cCcCHH--HHHHHHHHHcCCCCEEEEEeCCH
Confidence 579999999987 455678999998 555332 4446799999998 888888764
No 146
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.13 E-value=1.7e-10 Score=113.77 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=77.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|++++.. .+..++++.++|+.+.+ ..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~-~~ 130 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE------------LKLENIEPVQSRVEEFP-SE 130 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------TTCSSEEEEECCTTTSC-CC
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCeEEEecchhhCC-cc
Confidence 47899999999999999998764 237999999999999999887652 23345999999998876 45
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+.||+|++..+ ++ ...+.+.+.++|+|| .+++.
T Consensus 131 ~~~D~i~~~~~-~~-----~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 131 PPFDGVISRAF-AS-----LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SCEEEEECSCS-SS-----HHHHHHHHTTSEEEEEEEEEE
T ss_pred CCcCEEEEecc-CC-----HHHHHHHHHHhcCCCcEEEEE
Confidence 78999998653 22 235556799999999 45444
No 147
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.13 E-value=2.3e-10 Score=123.53 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+++.+.+...++++|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++... +...++++++
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~-----------~~~~~i~~~~ 93 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELN-----------GFSDKITLLR 93 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHc-----------CCCCCEEEEE
Confidence 3444445556788999999999999999998762 599999999 5999998876531 2234799999
Q ss_pred ccccccCCCCCCccEEEEccccccCch-hHHHHHHHHHHHccCCCEEEE
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPGvLII 829 (951)
+|+.+++++.+.||+|++..+.+++.. .....+...+.++||||+.++
T Consensus 94 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 94 GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999998877789999999865555432 223455567899999994443
No 148
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.13 E-value=1.9e-10 Score=125.78 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=81.6
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ ..++++..+|+.+ +.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~ 259 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA------------------FSGVEHLGGDMFD-GV 259 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEECCTTT-CC
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh------------------cCCCEEEecCCCC-CC
Confidence 3456899999999999999999876 4578999999 888876632 1479999999987 55
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+. . |+|++..++||+++++...+.+++.+.|+|| .++|...
T Consensus 260 p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 260 PK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp CC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 43 3 9999999999999777777778899999999 6766554
No 149
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.12 E-value=5.4e-11 Score=128.87 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|.++-.....+.+.+.+....+.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++++...
T Consensus 176 f~~~~~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~----------- 243 (343)
T 2pjd_A 176 FSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAAN----------- 243 (343)
T ss_dssp TTSSSCCHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHT-----------
T ss_pred cCCCCCcHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHh-----------
Confidence 3333333334566777755567799999999999999999876 3458999999999999999876521
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccC---chhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM---EEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL---~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+ .++++..+|+.+.. .++||+|++..++|+. ..+....+.+++.++|||| .+++.+++
T Consensus 244 -~-~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 244 -G-VEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp -T-CCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred -C-CCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 1 24677889987643 6789999999998873 3344566677899999999 66666654
No 150
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.12 E-value=1.5e-10 Score=118.82 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcC--CCCCceEEEEeCChHHHHHHHHHHHhhhh-ccccc---------
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY--PTALEKIVGVDISQKSLSRAAKIIHSKLS-KKLDA--------- 767 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~--g~~~~qVVGVDISeemLe~ArkrLsa~ls-~~~~~--------- 767 (951)
.++.+.+.+...++.+|||+|||+|.++..+++. . +..+|+|+|+|+.+++.|++++..... .....
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 3444444444345679999999999999998876 2 126899999999999999876542100 00000
Q ss_pred --CCCC-----CCCccEE-------------EEEccccccCC-----CCCCccEEEEccccccCch-------hHHHHHH
Q 002222 768 --AVPC-----TDVKSAV-------------LFDGSITVFDS-----RLHGFDIGTCLEVIEHMEE-------DEASQFG 815 (951)
Q Consensus 768 --l~Pr-----~~~~nVt-------------f~qGDa~dLp~-----~d~sFDlVVcieVLEHL~d-------D~l~~L~ 815 (951)
..+. ....+++ +.++|+.+... ....||+|+|.-.+.+... +....+.
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 0000 0000144 99999987432 3348999999866555442 4445666
Q ss_pred HHHHHccCCC-EEEEEecCC
Q 002222 816 NIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 816 eeL~RvLKPG-vLIISTPNs 834 (951)
+.+.++|+|| .+++ +++.
T Consensus 198 ~~~~~~LkpgG~l~~-~~~~ 216 (250)
T 1o9g_A 198 RSLASALPAHAVIAV-TDRS 216 (250)
T ss_dssp HHHHHHSCTTCEEEE-EESS
T ss_pred HHHHHhcCCCcEEEE-eCcc
Confidence 7899999999 6666 5554
No 151
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.12 E-value=2.2e-10 Score=124.82 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=83.9
Q ss_pred HHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 703 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 703 ~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
.+.+.+. ..+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.|++ ..++++..
T Consensus 199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~ 258 (372)
T 1fp1_D 199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------------------LSGIEHVG 258 (372)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEE
T ss_pred HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------------------cCCCEEEe
Confidence 3444443 3456899999999999999999876 3468999999 888877632 13699999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+|+.+ +.+. ||+|++..++||++++....+.+++.++|+|| .++|..
T Consensus 259 ~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 259 GDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99987 5443 99999999999999776667778899999998 666653
No 152
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.12 E-value=1.4e-10 Score=120.12 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+++......+...+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++..... ...
T Consensus 82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g---------~~~ 152 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---------QPP 152 (280)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---------SCC
T ss_pred eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---------CCC
Confidence 34455556777777777888999999999999999988521337999999999999999987653100 013
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.++++.++|+.+.++....||+|++ +++ +.. .+.+++.++|+|| .+++.+|+.+
T Consensus 153 ~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~ 207 (280)
T 1i9g_A 153 DNWRLVVSDLADSELPDGSVDRAVL-----DML-APW-EVLDAVSRLLVAGGVLMVYVATVT 207 (280)
T ss_dssp TTEEEECSCGGGCCCCTTCEEEEEE-----ESS-CGG-GGHHHHHHHEEEEEEEEEEESSHH
T ss_pred CcEEEEECchHhcCCCCCceeEEEE-----CCc-CHH-HHHHHHHHhCCCCCEEEEEeCCHH
Confidence 4799999999988777788999998 333 222 3345699999999 8888888754
No 153
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.12 E-value=1.7e-10 Score=117.77 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~-g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
+++......+...+...++.+|||+|||+|.++..+++. + +..+|+|+|+++.+++.|++++... +.
T Consensus 76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----------~~ 143 (255)
T 3mb5_A 76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWA-----------GF 143 (255)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHH-----------TC
T ss_pred cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHc-----------CC
Confidence 445555667888888888899999999999999999987 3 3489999999999999999876532 11
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
..++++.++|+.+. +...+||+|++ +++ +.. .+.+++.++|+|| .+++.+|+.+
T Consensus 144 ~~~v~~~~~d~~~~-~~~~~~D~v~~-----~~~-~~~-~~l~~~~~~L~~gG~l~~~~~~~~ 198 (255)
T 3mb5_A 144 DDRVTIKLKDIYEG-IEEENVDHVIL-----DLP-QPE-RVVEHAAKALKPGGFFVAYTPCSN 198 (255)
T ss_dssp TTTEEEECSCGGGC-CCCCSEEEEEE-----CSS-CGG-GGHHHHHHHEEEEEEEEEEESSHH
T ss_pred CCceEEEECchhhc-cCCCCcCEEEE-----CCC-CHH-HHHHHHHHHcCCCCEEEEEECCHH
Confidence 23499999999865 55678999998 344 222 3345799999999 7777777643
No 154
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.11 E-value=1.1e-10 Score=124.53 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=83.5
Q ss_pred CCCEEEEEcCccch----hHHHHhcCCCC---CceEEEEeCChHHHHHHHHHHHhhh--hc--------ccccCCCC-CC
Q 002222 712 CATTLVDFGCGSGS----LLDSLLDYPTA---LEKIVGVDISQKSLSRAAKIIHSKL--SK--------KLDAAVPC-TD 773 (951)
Q Consensus 712 k~krVLDIGCGeG~----ll~~LAk~g~~---~~qVVGVDISeemLe~ArkrLsa~l--s~--------~~~~l~Pr-~~ 773 (951)
+..+|||+|||+|. ++..|++..+. ..+|+|+|+|++||+.|++..-... .+ +.....+. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 45555554111 2589999999999999987531000 00 00000000 00
Q ss_pred --------CccEEEEEccccccCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 774 --------VKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 774 --------~~nVtf~qGDa~dLp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
..+|+|.++|+.+.+++ .+.||+|+|..|++|++++....+.+.+.+.|+||++++...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 13699999999986554 578999999999999998777777788999999995544433
No 155
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.11 E-value=4.2e-10 Score=111.12 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=70.8
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++. +++++++|+.+++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~~ 108 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSEIS 108 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGGCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcC-----------------CCEEEECcHHHCC
Confidence 34467899999999999999999875 2579999999999999987531 6899999998875
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHcc
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF 822 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvL 822 (951)
..||+|++...++|+.......+.+.+.+.+
T Consensus 109 ---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 109 ---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp ---CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred ---CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence 6899999999999997543345556788887
No 156
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.10 E-value=7.1e-10 Score=120.80 Aligned_cols=141 Identities=12% Similarity=0.005 Sum_probs=99.8
Q ss_pred HHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc--cEEE
Q 002222 703 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVL 779 (951)
Q Consensus 703 ~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~--nVtf 779 (951)
++.+.+. ..++.+|||+|||+|.++..+++.+ .+|+|||+|+.+++.|++++... +.. ++++
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~------------gl~~~~v~~ 207 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLA------------GLEQAPIRW 207 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHH------------TCTTSCEEE
T ss_pred HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHc------------CCCccceEE
Confidence 4555554 3456799999999999999999987 59999999999999999876521 222 4999
Q ss_pred EEccccccCCC----CCCccEEEEc----cc-----cccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002222 780 FDGSITVFDSR----LHGFDIGTCL----EV-----IEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 845 (951)
Q Consensus 780 ~qGDa~dLp~~----d~sFDlVVci----eV-----LEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~ 845 (951)
+++|+.++... ...||+|++. .. +.+.. +....+.+.+.++|+|| .+++.+.+..
T Consensus 208 i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~-~~~~~ll~~~~~~LkpgG~lli~~~~~~---------- 276 (332)
T 2igt_A 208 ICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLF-DHLPLMLDICREILSPKALGLVLTAYSI---------- 276 (332)
T ss_dssp ECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHH-HHHHHHHHHHHHTBCTTCCEEEEEECCT----------
T ss_pred EECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHH-HHHHHHHHHHHHhcCcCcEEEEEECCCC----------
Confidence 99999875432 5689999993 21 12222 23345556789999999 6566554421
Q ss_pred CccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002222 846 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 846 ~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
..+.+.|...+...+.+.|+.++.
T Consensus 277 -------------------------~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 277 -------------------------RASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp -------------------------TSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred -------------------------CCCHHHHHHHHHHHHHHcCCeEEE
Confidence 124566777766777778998874
No 157
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.10 E-value=5.1e-10 Score=122.45 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=84.4
Q ss_pred HHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 704 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 704 VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
+.+.+. ..+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ ..++++..+
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~ 251 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------------------FPGVTHVGG 251 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEEC
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------------------cCCeEEEeC
Confidence 444444 4456899999999999999999876 4478999999 888766632 147999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+.+ +.+. . |+|++..++||+++++...+.+++.+.|+|| .++|...
T Consensus 252 D~~~-~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 252 DMFK-EVPS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CTTT-CCCC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CcCC-CCCC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9987 5554 3 9999999999999777777778899999998 6666544
No 158
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.10 E-value=2.5e-10 Score=119.10 Aligned_cols=128 Identities=11% Similarity=0.035 Sum_probs=88.2
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002222 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+...+...++.+|||+|||+|.++..++++. +..+|+|||+++.+++.|++++..... .+...+++++++|
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~--------~~l~~~v~~~~~D 98 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDN--------AAFSARIEVLEAD 98 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGG--------TTTGGGEEEEECC
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhh--------CCCcceEEEEeCC
Confidence 3445555567899999999999999998876 347999999999999999987531000 0112369999999
Q ss_pred cccc-------CCCCCCccEEEEcccc----------------ccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002222 784 ITVF-------DSRLHGFDIGTCLEVI----------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 784 a~dL-------p~~d~sFDlVVcieVL----------------EHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
+.+. .+....||+|++.--+ .|...+....+.+.+.++|||| .+++..|......+
T Consensus 99 ~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 178 (260)
T 2ozv_A 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEI 178 (260)
T ss_dssp TTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHH
T ss_pred HHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHH
Confidence 9887 2456789999997221 1222223456667799999998 66666665443333
Q ss_pred H
Q 002222 840 L 840 (951)
Q Consensus 840 f 840 (951)
+
T Consensus 179 ~ 179 (260)
T 2ozv_A 179 I 179 (260)
T ss_dssp H
T ss_pred H
Confidence 3
No 159
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.10 E-value=2.8e-10 Score=113.35 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002222 694 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
|........++..++...++.+|||||||+|..+..+++..++..+|+|+|+|+.+++.|++++... +.
T Consensus 38 p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~ 106 (210)
T 3c3p_A 38 PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN-----------GL 106 (210)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------SG
T ss_pred CCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----------CC
Confidence 3333333334444444456789999999999999999987522479999999999999999876531 12
Q ss_pred CccEEEEEcccccc-CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 774 VKSAVLFDGSITVF-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 774 ~~nVtf~qGDa~dL-p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
..+++++++|+.+. +...+ ||+|++....+ + ...+.+.+.++|||| .+++..
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~~~----~-~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 107 IDRVELQVGDPLGIAAGQRD-IDILFMDCDVF----N-GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp GGGEEEEESCHHHHHTTCCS-EEEEEEETTTS----C-HHHHHHHHGGGEEEEEEEEEES
T ss_pred CceEEEEEecHHHHhccCCC-CCEEEEcCChh----h-hHHHHHHHHHhcCCCeEEEEEC
Confidence 24799999999764 44445 99999864322 2 234556799999999 555543
No 160
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.10 E-value=7.7e-11 Score=120.98 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=72.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCC-hHHHHHH---HHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS-QKSLSRA---AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDIS-eemLe~A---rkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
.++.+|||||||+|.++..|++.. +..+|+|||+| +.|++.| +++.. +.+..++.+.++|+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~------------~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPS------------KGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGG------------GTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH------------HcCCCCeEEEEcCHHH
Confidence 467799999999999999998654 34789999999 7777776 44322 1244589999999998
Q ss_pred cCCCCCCccEEEEccccccCc-------hhHHHHHHHHHHHccCCC-EEEE-EecCC
Q 002222 787 FDSRLHGFDIGTCLEVIEHME-------EDEASQFGNIVLSSFRPR-ILIV-STPNY 834 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~-------dD~l~~L~eeL~RvLKPG-vLII-STPNs 834 (951)
++. ..||.|.+..+..+.+ .+. ..+.+++.++|||| .+++ .+.+.
T Consensus 90 l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~-~~~l~~~~r~LkpGG~l~i~~~~~~ 143 (225)
T 3p2e_A 90 LPF--ELKNIADSISILFPWGTLLEYVIKPN-RDILSNVADLAKKEAHFEFVTTYSD 143 (225)
T ss_dssp CCG--GGTTCEEEEEEESCCHHHHHHHHTTC-HHHHHHHHTTEEEEEEEEEEECCCC
T ss_pred hhh--hccCeEEEEEEeCCCcHHhhhhhcch-HHHHHHHHHhcCCCcEEEEEEeccc
Confidence 853 2335555544432222 111 23445799999999 5555 44443
No 161
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.09 E-value=5e-11 Score=120.78 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC-ccEEEEEccccccCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~-~nVtf~qGDa~dLp~ 789 (951)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+. .+++++++|+.+++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~~d~~~~~- 140 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEV------------YGIADKIEFICGDFLLLA- 140 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEESCHHHHG-
T ss_pred cCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCcCeEEEECChHHhc-
Confidence 378899999999999999999987 7999999999999999987653 122 48999999999887
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
....||+|++...++|+.... ..+ .++.++|+|| .+++
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~~-~~~-~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYAT-AET-FDIRTMMSPDGFEIF 179 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGGG-SSS-BCTTTSCSSCHHHHH
T ss_pred ccCCCCEEEECCCcCCcchhh-hHH-HHHHhhcCCcceeHH
Confidence 567999999999999987443 233 3588999999 5443
No 162
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.09 E-value=4.9e-11 Score=120.61 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccc-cccCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa-~dLp~ 789 (951)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++. .++++.++|+ ..+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~ 106 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANA-----------------PHADVYEWNGKGELPA 106 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCSCSSCCT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhC-----------------CCceEEEcchhhccCC
Confidence 467899999999999999999986 79999999999999998751 3689999999 56777
Q ss_pred C-CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 790 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 ~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
. +++||+|++.. +. ..+.+++.++||||+.++
T Consensus 107 ~~~~~fD~v~~~~-------~~-~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 107 GLGAPFGLIVSRR-------GP-TSVILRLPELAAPDAHFL 139 (226)
T ss_dssp TCCCCEEEEEEES-------CC-SGGGGGHHHHEEEEEEEE
T ss_pred cCCCCEEEEEeCC-------CH-HHHHHHHHHHcCCCcEEE
Confidence 7 78999999972 11 123346999999995554
No 163
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.08 E-value=6.1e-10 Score=120.33 Aligned_cols=100 Identities=10% Similarity=0.097 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+..+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++ ..++++..+|+.+ +.+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~p 245 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------------------SNNLTYVGGDMFT-SIP 245 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------BTTEEEEECCTTT-CCC
T ss_pred ccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------------------CCCcEEEeccccC-CCC
Confidence 456899999999999999999875 3468999999 999877642 1259999999976 443
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCC---C-EEEEEecC
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP---R-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKP---G-vLIISTPN 833 (951)
.||+|++..++||++++....+.+++.++||| | .++|..+.
T Consensus 246 --~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 246 --NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred --CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 39999999999999976666777789999999 8 67776543
No 164
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.08 E-value=3.3e-10 Score=114.66 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
.......++...+...++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++... +...
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~ 105 (233)
T 2gpy_A 38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKAL-----------GLES 105 (233)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHT-----------TCTT
T ss_pred cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCC
Confidence 334444556666666678899999999999999999875 2379999999999999999876531 1224
Q ss_pred cEEEEEcccccc-CCC--CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 776 SAVLFDGSITVF-DSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 776 nVtf~qGDa~dL-p~~--d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
++++.++|+.+. +.. .+.||+|++....+. ...+.+.+.++|+|| .+++.+.
T Consensus 106 ~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~-----~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 106 RIELLFGDALQLGEKLELYPLFDVLFIDAAKGQ-----YRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp TEEEECSCGGGSHHHHTTSCCEEEEEEEGGGSC-----HHHHHHHHGGGEEEEEEEEEETT
T ss_pred cEEEEECCHHHHHHhcccCCCccEEEECCCHHH-----HHHHHHHHHHHcCCCeEEEEEcC
Confidence 699999999874 332 478999999776542 234456799999999 6666543
No 165
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.08 E-value=3.1e-10 Score=110.75 Aligned_cols=103 Identities=12% Similarity=0.196 Sum_probs=77.6
Q ss_pred HHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 704 ALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 704 VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.. .++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .++++.+
T Consensus 13 l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-----~----------------~~~~~~~ 67 (170)
T 3q87_B 13 LMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-----H----------------RGGNLVR 67 (170)
T ss_dssp HHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-----C----------------SSSCEEE
T ss_pred HHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-----c----------------cCCeEEE
Confidence 3344444 567899999999999999998875 89999999999987 1 2578999
Q ss_pred ccccccCCCCCCccEEEEccccccCchh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEED-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+|+.+ +..++.||+|++...+++.++. ....+.+.+.+.+ || .+++.++.
T Consensus 68 ~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 68 ADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 99987 4555899999999888876533 1223334577777 87 77666644
No 166
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.07 E-value=3.2e-10 Score=114.92 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc---
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--- 786 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d--- 786 (951)
..++.+|||+|||+|.++..|++..++..+|+|+|+|+.+++.+.+.... . .++++.++|+.+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-------------~-~~v~~~~~d~~~~~~ 140 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-------------R-TNIIPVIEDARHPHK 140 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-------------C-TTEEEECSCTTCGGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-------------c-CCeEEEEcccCChhh
Confidence 44678999999999999999998732336999999999988877665431 1 479999999987
Q ss_pred cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 787 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
++.....||+|++... .++....+..++.++|||| .++++++
T Consensus 141 ~~~~~~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 141 YRMLIAMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp GGGGCCCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccCCcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3445678999998544 3344455566799999999 6666544
No 167
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.07 E-value=1.6e-10 Score=119.67 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
....+++..++...++++|||||||+|..+..|++..++..+|+|+|+++++++.|++++... +...++
T Consensus 46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i 114 (242)
T 3r3h_A 46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-----------KQEHKI 114 (242)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 334445555555567889999999999999999986533479999999999999998877531 223489
Q ss_pred EEEEccccccCCC------CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 778 VLFDGSITVFDSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 778 tf~qGDa~dLp~~------d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+++++|+.+.... .++||+|++.... .....+.+.+.++|||| .+++.
T Consensus 115 ~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 115 KLRLGPALDTLHSLLNEGGEHQFDFIFIDADK-----TNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEESCHHHHHHHHHHHHCSSCEEEEEEESCG-----GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEE
Confidence 9999999775332 4789999886542 22234556799999999 55554
No 168
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.07 E-value=4.2e-10 Score=120.81 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=85.5
Q ss_pred HHHhh-cCCCCEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 705 LQHIK-ESCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 705 ldlL~-~~k~krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
++.+. .....+|||||||. +.++..+++...+..+|+|||+|+.||+.|++++.. ....+++|++
T Consensus 70 v~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~------------~~~~~~~~v~ 137 (277)
T 3giw_A 70 VAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS------------TPEGRTAYVE 137 (277)
T ss_dssp HHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC------------CSSSEEEEEE
T ss_pred HHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc------------CCCCcEEEEE
Confidence 34444 34568999999997 444444443322448999999999999999887641 1224799999
Q ss_pred ccccccCC----C--CCCcc-----EEEEccccccCchhH-HHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 782 GSITVFDS----R--LHGFD-----IGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 782 GDa~dLp~----~--d~sFD-----lVVcieVLEHL~dD~-l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+|+.+++. + ...|| +|+++.+|||+++++ ...+.+.+.+.|+|| .+++++...++
T Consensus 138 aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~ 205 (277)
T 3giw_A 138 ADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF 205 (277)
T ss_dssp CCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT
T ss_pred ecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 99988631 1 24455 688999999999654 234455699999999 88888766554
No 169
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.07 E-value=1.5e-09 Score=118.33 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=89.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002222 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.+.+......+|||||||+|.++..+++.. +..+++..|. +.+++.|++++. .....+|++..+|
T Consensus 171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~------------~~~~~rv~~~~gD 236 (353)
T 4a6d_A 171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFS------------FQEEEQIDFQEGD 236 (353)
T ss_dssp HHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSC------------C--CCSEEEEESC
T ss_pred HHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhh------------hcccCceeeecCc
Confidence 3444444567899999999999999999887 4578899996 889999987643 2235689999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+.+.+. .++|+|++..+||++++++...+.+++++.|+|| .++|..+
T Consensus 237 ~~~~~~--~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 237 FFKDPL--PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp TTTSCC--CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cccCCC--CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 976543 4689999999999999887777778899999998 6666543
No 170
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.07 E-value=3.2e-10 Score=114.46 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=85.3
Q ss_pred HHHHHhh--cCCCCEEEEEcCccchhHHHHhcCCCC-----CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 703 YALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTA-----LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 703 ~VldlL~--~~k~krVLDIGCGeG~ll~~LAk~g~~-----~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
.+.+.+. ..++.+|||||||+|.++..+++..+. ..+|+|+|+++.+++.|++++....... ....
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-------~~~~ 145 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-------LDSG 145 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-------HHHT
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc-------cCCC
Confidence 4445542 446789999999999999998875311 1489999999999999998765321000 0024
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++++.++|+.+.......||+|++..+++|+. +.+.+.|||| .+++++..
T Consensus 146 ~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 146 QLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred ceEEEECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 79999999987322237899999999999988 4588899999 77777654
No 171
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.07 E-value=4.6e-10 Score=113.96 Aligned_cols=102 Identities=7% Similarity=0.094 Sum_probs=78.6
Q ss_pred hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc-
Q 002222 708 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV- 786 (951)
Q Consensus 708 L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d- 786 (951)
+...++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.. .. .++.++.+|+.+
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~-------------~~-~~v~~~~~d~~~~ 134 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA-------------ER-ENIIPILGDANKP 134 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTT-------------TC-TTEEEEECCTTCG
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhh-------------cC-CCeEEEECCCCCc
Confidence 3344678999999999999999998742 3699999999999999987642 12 589999999988
Q ss_pred ---cCCCCCCccEEEEccccccCch-hHHHHHHHHHHHccCCC-EEEEE
Q 002222 787 ---FDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 787 ---Lp~~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.++. ..||+|+ ++++. +....+.+++.++|||| .+++.
T Consensus 135 ~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 135 QEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp GGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 6655 7899998 44442 33355556799999999 55554
No 172
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.07 E-value=4.8e-10 Score=128.01 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=86.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++... +...++++++
T Consensus 148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~-----------gl~~~v~~~~ 213 (480)
T 3b3j_A 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSN-----------NLTDRIVVIP 213 (480)
T ss_dssp HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 3455555556788999999999999999998752 6999999998 999998776431 1225799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEE
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILI 828 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLI 828 (951)
+|+.+++.+ ..||+|++..+++|+..+........+.++|||| .++
T Consensus 214 ~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 214 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp SCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred CchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 999987654 5899999998888887554444444689999999 444
No 173
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.06 E-value=3.3e-10 Score=106.45 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=80.0
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
..++.+|||+|||+|.++..+++..++..+++|+|+++ +++. .++++.++|+.+.+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------------VGVDFLQGDFRDELV 76 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------------TTEEEEESCTTSHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------------CcEEEEEcccccchh
Confidence 35678999999999999999988721337999999998 6422 26889999998876
Q ss_pred -------CCCCCccEEEEccccccCchhH---H------HHHHHHHHHccCCC-EEEEEecCCc
Q 002222 789 -------SRLHGFDIGTCLEVIEHMEEDE---A------SQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 789 -------~~d~sFDlVVcieVLEHL~dD~---l------~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
...++||+|++..++++..... . ..+.+++.++|+|| .+++.+++.+
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 5668999999998888776321 1 35556799999998 7777777654
No 174
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.05 E-value=1.2e-09 Score=109.65 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+++..++...++.+|||||||+|.++..+++..++..+|+|+|+++.+++.|++++... +...++++.
T Consensus 58 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~i~~~ 126 (229)
T 2avd_A 58 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-----------EAEHKIDLR 126 (229)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-----------TCTTTEEEE
T ss_pred HHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----------CCCCeEEEE
Confidence 345555555567889999999999999999987433479999999999999999876531 122479999
Q ss_pred EccccccCC--C--C--CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 781 DGSITVFDS--R--L--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 781 qGDa~dLp~--~--d--~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
++|+.+... . . +.||+|++.... .....+.+.+.++|+|| .+++.
T Consensus 127 ~~d~~~~~~~~~~~~~~~~~D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 127 LKPALETLDELLAAGEAGTFDVAVVDADK-----ENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp ESCHHHHHHHHHHTTCTTCEEEEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCHHHHHHHHHhcCCCCCccEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEE
Confidence 999865421 1 1 689999986542 22234556799999999 55554
No 175
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.05 E-value=3.5e-10 Score=116.19 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=84.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc-cC--
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FD-- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d-Lp-- 788 (951)
++.+|||||||+|.++..+++.+ +..+|+|||+|+.+++.|++++....... ....+..+++++++|+.+ ++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~nv~~~~~D~~~~l~~~ 123 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNT----ASKHGFQNINVLRGNAMKFLPNF 123 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-----CCSTTTTEEEEECCTTSCGGGT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhcc----ccccCCCcEEEEeccHHHHHHHh
Confidence 56799999999999999999876 34689999999999999988765321100 000134589999999987 55
Q ss_pred CCCCCccEEEEccccccCchh------HHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002222 789 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 840 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf 840 (951)
+..+.+|.|+....-.+.... ....+.+.+.++|+|| .+++.|.+.++....
T Consensus 124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~ 182 (246)
T 2vdv_E 124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWM 182 (246)
T ss_dssp SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHH
T ss_pred ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHH
Confidence 556789998754321111000 0024556799999999 777777776554443
No 176
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.04 E-value=6.8e-10 Score=111.68 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=78.4
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
..++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.++++.. .. .++++.++|+.+..
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~-------------~~-~~v~~~~~d~~~~~~ 136 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE-------------ER-RNIVPILGDATKPEE 136 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS-------------SC-TTEEEEECCTTCGGG
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHh-------------cc-CCCEEEEccCCCcch
Confidence 4567899999999999999999763233699999999999999987653 11 58999999998742
Q ss_pred --CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 789 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 789 --~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
....+||+|++... .++....+.+++.++|||| .+++..
T Consensus 137 ~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 137 YRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12358999997654 2344445456799999999 555553
No 177
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.03 E-value=4.1e-10 Score=117.39 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|..+..++... +..+|+|+|+|+.+++.|+++... .+..+++++++|+.+++..
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~l~~v~~~~~d~~~~~~~ 145 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEV------------LGLKGARALWGRAEVLARE 145 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHH------------HTCSSEEEEECCHHHHTTS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------hCCCceEEEECcHHHhhcc
Confidence 357899999999999999988764 347999999999999999987653 1334699999999988753
Q ss_pred ---CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 791 ---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 791 ---d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
.+.||+|++..+- ....+.+.+.++|||| .+++
T Consensus 146 ~~~~~~fD~I~s~a~~------~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 146 AGHREAYARAVARAVA------PLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp TTTTTCEEEEEEESSC------CHHHHHHHHGGGEEEEEEEEE
T ss_pred cccCCCceEEEECCcC------CHHHHHHHHHHHcCCCeEEEE
Confidence 4789999997552 2245666799999999 4444
No 178
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.03 E-value=5.5e-10 Score=120.24 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=88.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+...+|+|+|+|+.+++.+++++.. .+..++++.++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~------------~g~~~v~~~~~ 176 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR------------LGVLNVILFHS 176 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------HTCCSEEEESS
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH------------hCCCeEEEEEC
Confidence 445556667888999999999999999987642336899999999999999988653 23347999999
Q ss_pred cccccCCCCCCccEEEE------ccccccCch-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDSRLHGFDIGTC------LEVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVc------ieVLEHL~d-------D-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++...+.||+|++ .+++.+.++ + ....+.+.+.++|||| .++++|..
T Consensus 177 D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 177 SSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99988765678999998 344544331 1 1135566799999998 77777654
No 179
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.03 E-value=1.3e-09 Score=110.12 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
..-...+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++.... +...++
T Consensus 77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~ 142 (248)
T 2yvl_A 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKF-----------NLGKNV 142 (248)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHT-----------TCCTTE
T ss_pred chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 3344566777777788999999999999999998874 79999999999999999876421 112479
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
++..+|+.+......+||+|++ +.+ +.... .+.+.++|+|| .+++.+|+.+
T Consensus 143 ~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~~~-l~~~~~~L~~gG~l~~~~~~~~ 194 (248)
T 2yvl_A 143 KFFNVDFKDAEVPEGIFHAAFV-----DVR-EPWHY-LEKVHKSLMEGAPVGFLLPTAN 194 (248)
T ss_dssp EEECSCTTTSCCCTTCBSEEEE-----CSS-CGGGG-HHHHHHHBCTTCEEEEEESSHH
T ss_pred EEEEcChhhcccCCCcccEEEE-----CCc-CHHHH-HHHHHHHcCCCCEEEEEeCCHH
Confidence 9999999886535678999997 333 22223 35699999998 8888888753
No 180
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.02 E-value=3.9e-09 Score=104.27 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=78.8
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. +++++++|+.+++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~-~~~~~~~d~~~~~ 110 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGE------------FKG-KFKVFIGDVSEFN 110 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGG------------GTT-SEEEEESCGGGCC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------cCC-CEEEEECchHHcC
Confidence 345678999999999999999998862 5899999999999999887532 122 7999999998875
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
..||+|++.-.+++........+.+.+.+++ | .+++.
T Consensus 111 ---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 111 ---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp ---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 4899999988877765433345556688887 6 44333
No 181
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.02 E-value=1e-09 Score=117.67 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
.++.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|++++..... .....+++++.+|+.++..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~--------~~~~~~v~~~~~D~~~~~~~ 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISR--------SLADPRATVRVGDGLAFVRQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--------GGGCTTEEEEESCHHHHHHS
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhc--------ccCCCcEEEEECcHHHHHHh
Confidence 466899999999999999999875 347999999999999999987532110 0123589999999987654
Q ss_pred -CCCCccEEEEccccccCchhHH--HHHHHHHHHccCCC-EEEEEec
Q 002222 790 -RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 -~d~sFDlVVcieVLEHL~dD~l--~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+.||+|++.....+.+...+ ..+.+.+.++|||| .+++..+
T Consensus 165 ~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 165 TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 3678999999766544332222 35566799999999 5555543
No 182
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.01 E-value=2.1e-09 Score=113.33 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHHhhhhcccccCCCCCCC-
Q 002222 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDV- 774 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDI-SeemLe~ArkrLsa~ls~~~~~l~Pr~~~- 774 (951)
.....+++.+.....++++|||||||+|.++..+++.+. .+|+|+|+ |+.+++.|+++....... ..+.
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~-------~~~~~ 134 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTAN-------SCSSE 134 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhh-------hcccc
Confidence 344455566555556778999999999999999998762 49999999 899999998876311000 1111
Q ss_pred ----ccEEEEEccccccC--C----CCCCccEEEEccccccCchhHHHHHHHHHHHccC---C--C-EEEE
Q 002222 775 ----KSAVLFDGSITVFD--S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFR---P--R-ILIV 829 (951)
Q Consensus 775 ----~nVtf~qGDa~dLp--~----~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLK---P--G-vLII 829 (951)
.++++...+..+.. . ....||+|++.++++|.+ +. ..+.+.+.++|+ | | .+++
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-~~-~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 135 TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-AH-DALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ----CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-GH-HHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-HH-HHHHHHHHHHhcccCCCCCCEEEE
Confidence 26778766644321 1 357899999999999976 33 344567999999 8 7 4443
No 183
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.00 E-value=3.2e-09 Score=108.53 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=82.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...++++.+
T Consensus 62 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~~~ 130 (232)
T 3cbg_A 62 QFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-----------GVAEKISLRL 130 (232)
T ss_dssp HHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEE
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 34444444456789999999999999999987533479999999999999999876531 1224799999
Q ss_pred cccccc----CCCC--CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 782 GSITVF----DSRL--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 782 GDa~dL----p~~d--~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+|+.+. +..+ ++||+|++....+ ....+.+.+.++|+|| .+++..
T Consensus 131 ~d~~~~l~~l~~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 131 GPALATLEQLTQGKPLPEFDLIFIDADKR-----NYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp SCHHHHHHHHHTSSSCCCEEEEEECSCGG-----GHHHHHHHHHHTEEEEEEEEEEC
T ss_pred cCHHHHHHHHHhcCCCCCcCEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEeC
Confidence 997552 2223 7899999865522 2234556799999999 555543
No 184
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.00 E-value=2.9e-09 Score=113.14 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
|..+.-++.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++... +..
T Consensus 106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~-----------~l~ 172 (284)
T 1nv8_A 106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERH-----------GVS 172 (284)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHT-----------TCT
T ss_pred hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc-----------CCC
Confidence 444555566666665456689999999999999999887 2379999999999999999876521 112
Q ss_pred ccEEEEEccccccCCCCCCc---cEEEEc------------cccccCchhHH------HHHHHHHH-HccCCC-EEEEEe
Q 002222 775 KSAVLFDGSITVFDSRLHGF---DIGTCL------------EVIEHMEEDEA------SQFGNIVL-SSFRPR-ILIVST 831 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sF---DlVVci------------eVLEHL~dD~l------~~L~eeL~-RvLKPG-vLIIST 831 (951)
.+++++++|+.+.. . +.| |+|+++ ++. |-+...+ ..+.+.+. +.|+|| .+++..
T Consensus 173 ~~v~~~~~D~~~~~-~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 173 DRFFVRKGEFLEPF-K-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp TSEEEEESSTTGGG-G-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CceEEEECcchhhc-c-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 25999999998742 2 478 999996 333 4432111 13455688 999999 667666
Q ss_pred cCCc
Q 002222 832 PNYE 835 (951)
Q Consensus 832 PNsE 835 (951)
+...
T Consensus 250 ~~~q 253 (284)
T 1nv8_A 250 GEDQ 253 (284)
T ss_dssp CTTC
T ss_pred CchH
Confidence 5543
No 185
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.99 E-value=8.3e-10 Score=114.80 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++... .+.. +++.++|+.+. ++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~------------~~~~-v~~~~~d~~~~-~~ 181 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKR------------NGVR-PRFLEGSLEAA-LP 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHH------------TTCC-CEEEESCHHHH-GG
T ss_pred CCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHH------------cCCc-EEEEECChhhc-Cc
Confidence 467899999999999999999987 4999999999999999987642 1222 89999998763 34
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
...||+|++....+++ ..+.+.+.++|+|| .++++.+
T Consensus 182 ~~~fD~Vv~n~~~~~~-----~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 182 FGPFDLLVANLYAELH-----AALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp GCCEEEEEEECCHHHH-----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEEEECCcHHHH-----HHHHHHHHHHcCCCCEEEEEee
Confidence 5689999997665443 35556799999999 6666543
No 186
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.99 E-value=8.9e-10 Score=118.33 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhh-----hcccccCCCC
Q 002222 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL-----SKKLDAAVPC 771 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~l-----s~~~~~l~Pr 771 (951)
+......++..+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.... ... .
T Consensus 90 ~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~------~ 163 (336)
T 2b25_A 90 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV------E 163 (336)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCS------S
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccc------c
Confidence 33345566777777788999999999999999999863244799999999999999998765321 000 0
Q ss_pred CCCccEEEEEcccccc--CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002222 772 TDVKSAVLFDGSITVF--DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dL--p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
....++++.++|+.+. ++.++.||+|++...- .. .+.+++.++|+|| .+++.+|+.+
T Consensus 164 ~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~-----~~--~~l~~~~~~LkpgG~lv~~~~~~~ 223 (336)
T 2b25_A 164 EWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN-----PH--VTLPVFYPHLKHGGVCAVYVVNIT 223 (336)
T ss_dssp CCCCCEEEEESCTTCCC-------EEEEEECSSS-----TT--TTHHHHGGGEEEEEEEEEEESSHH
T ss_pred ccCCceEEEECChHHcccccCCCCeeEEEECCCC-----HH--HHHHHHHHhcCCCcEEEEEeCCHH
Confidence 1135799999999886 3456689999984321 11 1345699999999 7778888643
No 187
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=98.99 E-value=1.3e-09 Score=118.13 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ ..++++..+|+.+ +.+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~~ 250 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------------------NENLNFVGGDMFK-SIP 250 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------------------CSSEEEEECCTTT-CCC
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------------------CCCcEEEeCccCC-CCC
Confidence 356899999999999999999876 3468999999 688866532 1359999999987 544
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCC---C-EEEEEec
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP---R-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKP---G-vLIISTP 832 (951)
.||+|++..++||++++....+.+++.++|+| | .++|..+
T Consensus 251 --~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 251 --SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred --CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 59999999999999976666777889999999 7 6666544
No 188
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.98 E-value=1.1e-09 Score=113.66 Aligned_cols=116 Identities=11% Similarity=0.068 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
..-+++..++...++++|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... +...+++
T Consensus 66 ~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----------g~~~~i~ 134 (247)
T 1sui_A 66 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-----------GVDHKID 134 (247)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-----------TCGGGEE
T ss_pred HHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCeE
Confidence 33344444455567889999999999999999886422479999999999999999876531 1234799
Q ss_pred EEEcccccc-CCC------CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 779 LFDGSITVF-DSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 779 f~qGDa~dL-p~~------d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
++++|+.+. +.. .+.||+|++..... + ...+.+.+.++|||| .+++.
T Consensus 135 ~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~----~-~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 135 FREGPALPVLDEMIKDEKNHGSYDFIFVDADKD----N-YLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp EEESCHHHHHHHHHHSGGGTTCBSEEEECSCST----T-HHHHHHHHHHHBCTTCCEEEE
T ss_pred EEECCHHHHHHHHHhccCCCCCEEEEEEcCchH----H-HHHHHHHHHHhCCCCeEEEEe
Confidence 999999764 221 57899999865422 2 234556799999999 55554
No 189
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.98 E-value=2.4e-09 Score=112.08 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.|++.+.+.+. ++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++... +...+++
T Consensus 10 ~RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~-----------gl~~~I~ 75 (230)
T 3lec_A 10 KRLQKVANYVP--KGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEH-----------GLTSKID 75 (230)
T ss_dssp HHHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTEE
T ss_pred HHHHHHHHhCC--CCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEE
Confidence 57788877775 56799999999999999999986 4468999999999999999887532 1234799
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
+.++|+.+...+...||+|+..++. .+....+.+.....|+++..+|..|+..
T Consensus 76 ~~~gD~l~~~~~~~~~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~~~ 128 (230)
T 3lec_A 76 VRLANGLSAFEEADNIDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQPNNR 128 (230)
T ss_dssp EEECSGGGGCCGGGCCCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred EEECchhhccccccccCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence 9999998876555579998865543 2334555566788899885555556644
No 190
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.98 E-value=1.5e-09 Score=114.53 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=87.6
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC
Q 002222 690 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 769 (951)
Q Consensus 690 ~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~ 769 (951)
..|++....+|.. +.+.+ .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...
T Consensus 106 ~~f~~~~~~~~~~-l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n--------- 171 (278)
T 2frn_A 106 IMFSPANVKERVR-MAKVA--KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLN--------- 171 (278)
T ss_dssp SCCCGGGHHHHHH-HHHHC--CTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHT---------
T ss_pred eeEcCCcHHHHHH-HHHhC--CCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHc---------
Confidence 4456655555543 33433 3578999999999999999999873 37999999999999999876521
Q ss_pred CCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 770 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 770 Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+...+++++++|+.++.. ...||+|++.... .. ..+.+.+.++|+|| .+++.+..
T Consensus 172 --~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-----~~-~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 172 --KVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-----RT-HEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp --TCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-----SG-GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --CCCceEEEEECCHHHhcc-cCCccEEEECCch-----hH-HHHHHHHHHHCCCCeEEEEEEee
Confidence 112359999999998876 6789999885331 11 23445689999998 66665543
No 191
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.98 E-value=1.6e-09 Score=112.88 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
++++.....+...+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++... +..
T Consensus 95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~ 163 (277)
T 1o54_A 95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----------GLI 163 (277)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----------TCG
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----------CCC
Confidence 344455567777777778899999999999999999887223479999999999999999876521 112
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.++++..+|+.+. +..+.||+|++. ++ +.. .+.+.+.++|+|| .+++.+|.
T Consensus 164 ~~v~~~~~d~~~~-~~~~~~D~V~~~-----~~-~~~-~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 164 ERVTIKVRDISEG-FDEKDVDALFLD-----VP-DPW-NYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp GGEEEECCCGGGC-CSCCSEEEEEEC-----CS-CGG-GTHHHHHHHEEEEEEEEEEESS
T ss_pred CCEEEEECCHHHc-ccCCccCEEEEC-----Cc-CHH-HHHHHHHHHcCCCCEEEEEeCC
Confidence 4799999999876 555789999983 33 222 3345699999999 77777775
No 192
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.97 E-value=1.9e-09 Score=114.22 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
..+.+|||||||.|-++..++ + ...++|+|||+.+++.+++.+.. .+ .+..+.++|....+.+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~--~~~y~a~DId~~~i~~ar~~~~~------------~g-~~~~~~v~D~~~~~~~ 166 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--G--IASVWGCDIHQGLGDVITPFARE------------KD-WDFTFALQDVLCAPPA 166 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--T--CSEEEEEESBHHHHHHHHHHHHH------------TT-CEEEEEECCTTTSCCC
T ss_pred CCCCeEEEecCCccHHHHHhc--c--CCeEEEEeCCHHHHHHHHHHHHh------------cC-CCceEEEeecccCCCC
Confidence 467899999999999998877 3 27999999999999999987642 12 4789999999887765
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
. .||+|++.-++||++..+..... .+...|+++.++|+.|-
T Consensus 167 ~-~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPt 207 (253)
T 3frh_A 167 E-AGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPT 207 (253)
T ss_dssp C-BCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEEC
T ss_pred C-CcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcCh
Confidence 4 89999999999999866555555 58889999999999984
No 193
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.97 E-value=4.2e-09 Score=111.17 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.|++.+.+.+. ++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++... +...+|+
T Consensus 10 ~RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~-----------gl~~~I~ 75 (244)
T 3gnl_A 10 KRLEKVASYIT--KNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSS-----------GLTEQID 75 (244)
T ss_dssp HHHHHHHTTCC--SSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTEE
T ss_pred HHHHHHHHhCC--CCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCceEE
Confidence 57778877775 45799999999999999999986 4468999999999999999887531 1224699
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
+.++|+.+...+...||+|+..++ ..+....+.+.....|+++..+|..|+..
T Consensus 76 v~~gD~l~~~~~~~~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~ 128 (244)
T 3gnl_A 76 VRKGNGLAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPNIA 128 (244)
T ss_dssp EEECSGGGGCCGGGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred EEecchhhccCccccccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 999999887654446999987544 22344555566888999884444456644
No 194
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.97 E-value=1e-09 Score=118.39 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=73.3
Q ss_pred HHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 701 VEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 701 ~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
+..+++.+.. .++.+|||||||+|.++..|++.+. .+|+|||+|+.||+.+.+.- .++..
T Consensus 73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~-----------------~rv~~ 133 (291)
T 3hp7_A 73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQD-----------------DRVRS 133 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTC-----------------TTEEE
T ss_pred HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhC-----------------cccce
Confidence 3444454443 3567999999999999999998863 69999999999999864321 12322
Q ss_pred E-EccccccCC---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002222 780 F-DGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 780 ~-qGDa~dLp~---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
. ..++..++. +...||+|+|..+++++. .++.++.++|+|| .+++
T Consensus 134 ~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~-----~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 134 MEQYNFRYAEPVDFTEGLPSFASIDVSFISLN-----LILPALAKILVDGGQVVA 183 (291)
T ss_dssp ECSCCGGGCCGGGCTTCCCSEEEECCSSSCGG-----GTHHHHHHHSCTTCEEEE
T ss_pred ecccCceecchhhCCCCCCCEEEEEeeHhhHH-----HHHHHHHHHcCcCCEEEE
Confidence 2 234444332 234599999988888774 3445799999998 4444
No 195
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.96 E-value=1.8e-09 Score=122.21 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHH-------HHHHHhhhhcccccCCC
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-------AKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~A-------rkrLsa~ls~~~~~l~P 770 (951)
......+++.+...++.+|||||||+|.++..+++..+ ..+|+|||+++.+++.| ++++..
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~----------- 295 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKL----------- 295 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHH-----------
Confidence 44445666777777889999999999999999998642 25899999999999988 554431
Q ss_pred CCC--CccEEEEEcccccc--CC--CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 771 CTD--VKSAVLFDGSITVF--DS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 771 r~~--~~nVtf~qGDa~dL--p~--~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.+ ..++++.++|.... ++ ....||+|++..++ +.+ +....+ +++.+.|||| .+++.
T Consensus 296 -~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~-d~~~~L-~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 296 -YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDE-DLNKKV-EKILQTAKVGCKIISL 358 (433)
T ss_dssp -TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCH-HHHHHH-HHHHTTCCTTCEEEES
T ss_pred -cCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-ccc-cHHHHH-HHHHHhCCCCeEEEEe
Confidence 12 35899999865432 11 24689999998766 323 443444 5799999999 55543
No 196
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.95 E-value=2e-09 Score=118.47 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
|+.+.....+.... ..++.+|||+|||+|.++..++..+ ...+|+|+|+|+.|++.|++++... +..
T Consensus 201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~-----------gl~ 267 (373)
T 3tm4_A 201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAA-----------GVL 267 (373)
T ss_dssp CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHT-----------TCG
T ss_pred CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHc-----------CCC
Confidence 55555555666666 6678899999999999999999887 2348999999999999999886531 122
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccc-------cCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002222 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIE-------HMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLE-------HL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
.++++.++|+.+++..+..||+|++.-... ++. +....+.+.+.++| +|.+++.+++
T Consensus 268 ~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~-~ly~~~~~~l~r~l-~g~~~~i~~~ 331 (373)
T 3tm4_A 268 DKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIP-DLYMKFFNELAKVL-EKRGVFITTE 331 (373)
T ss_dssp GGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHH-HHHHHHHHHHHHHE-EEEEEEEESC
T ss_pred CceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHH-HHHHHHHHHHHHHc-CCeEEEEECC
Confidence 579999999999988788999999954322 222 22355667788888 5544444444
No 197
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.95 E-value=3e-09 Score=111.18 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHhh---cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002222 695 PLSKQRVEYALQHIK---ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 695 PL~~QR~e~VldlL~---~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|.....-..+...+. ..++.+|||+|||+|.++..+++..++..+|+|+|+|+.|++...+....
T Consensus 56 ~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------------ 123 (232)
T 3id6_C 56 AFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------------ 123 (232)
T ss_dssp TTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------------
Confidence 444433445555554 56789999999999999999987643447999999999987654433211
Q ss_pred CCCccEEEEEccccccCC---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 772 TDVKSAVLFDGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..++.++++|+..... ....||+|++.... +++...+...+.++|||| .++++..
T Consensus 124 --r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 124 --RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp --CTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --cCCeEEEEcccccchhhhccccceEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 1379999999986532 24689999987553 355566666677799999 6666643
No 198
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.95 E-value=2.8e-09 Score=110.46 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=95.5
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 700 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 700 R~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
+++.+++.+.. ..+++|||||||+|.++..|++.+. .+|+|||+|+.|++.|+++.. ++.
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~-----------------~~~ 84 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDE-----------------RVV 84 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCT-----------------TEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCc-----------------ccc
Confidence 34445555543 3567999999999999999999862 599999999999999865321 111
Q ss_pred EE-EccccccC---CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCc
Q 002222 779 LF-DGSITVFD---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPD 853 (951)
Q Consensus 779 f~-qGDa~dLp---~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPd 853 (951)
.. ..++.... .....||.+.+-.++.++. .+.+++.++|||| .+++.+ ...|......+ +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l~-----~~l~~i~rvLkpgG~lv~~~-~p~~e~~~~~~-~-------- 149 (232)
T 3opn_A 85 VMEQFNFRNAVLADFEQGRPSFTSIDVSFISLD-----LILPPLYEILEKNGEVAALI-KPQFEAGREQV-G-------- 149 (232)
T ss_dssp EECSCCGGGCCGGGCCSCCCSEEEECCSSSCGG-----GTHHHHHHHSCTTCEEEEEE-CHHHHSCHHHH-C--------
T ss_pred ccccceEEEeCHhHcCcCCCCEEEEEEEhhhHH-----HHHHHHHHhccCCCEEEEEE-CcccccCHHHh-C--------
Confidence 11 11121111 1111256665555555553 3446799999998 555543 22222111111 0
Q ss_pred hhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002222 854 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 854 e~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~~ 918 (951)
....++++ +...++.+++.+ ++.+.||.+.-.-...-. +..|...-+..++|..
T Consensus 150 -----~~G~~~d~-~~~~~~~~~l~~----~l~~aGf~v~~~~~~pi~-g~~gn~e~l~~~~~~~ 203 (232)
T 3opn_A 150 -----KNGIIRDP-KVHQMTIEKVLK----TATQLGFSVKGLTFSPIK-GGAGNVEFLVHLLKDG 203 (232)
T ss_dssp ------CCCCCCH-HHHHHHHHHHHH----HHHHHTEEEEEEEECSSC-BTTTBCCEEEEEEESS
T ss_pred -----cCCeecCc-chhHHHHHHHHH----HHHHCCCEEEEEEEccCC-CCCCCHHHHHHHhhcc
Confidence 01112222 222346666664 566779998644332211 1234444556666643
No 199
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=119.54 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=79.0
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..++++|||||||+|.++...++.|. .+|+|||.|+ |++.|++.+... +...+|+++++++++++.
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n-----------~~~~~i~~i~~~~~~~~l 146 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFN-----------GLEDRVHVLPGPVETVEL 146 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHT-----------TCTTTEEEEESCTTTCCC
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHc-----------CCCceEEEEeeeeeeecC
Confidence 35789999999999999998888884 6899999996 888888765431 233579999999999876
Q ss_pred CCCCccEEEEccccccCch-hHHHHHHHHHHHccCCCEEEE
Q 002222 790 RLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPGvLII 829 (951)
+ ..||+|+|-.+-..+.. ..+..+.....++||||+++|
T Consensus 147 p-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 147 P-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp S-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred C-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 5 68999998443332321 234555666789999995544
No 200
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.95 E-value=9.4e-10 Score=106.48 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=71.1
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..++.+|||||||. +++|+|+.|++.|+++.. .++++.++|+.++++
T Consensus 10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----------------~~~~~~~~d~~~~~~ 56 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----------------NEGRVSVENIKQLLQ 56 (176)
T ss_dssp CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----------------TTSEEEEEEGGGGGG
T ss_pred CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----------------cCcEEEEechhcCcc
Confidence 34678999999985 239999999999987632 148999999999887
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+++||+|+|..++||+.++.. .+.+++.++|||| .+++..|
T Consensus 57 ~~~~~~~fD~V~~~~~l~~~~~~~~-~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 57 SAHKESSFDIILSGLVPGSTTLHSA-EILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp GCCCSSCEEEEEECCSTTCCCCCCH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCCEeEEEECChhhhcccCHH-HHHHHHHHHCCCCEEEEEEcc
Confidence 7889999999999999932443 4446799999999 6777554
No 201
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.93 E-value=1.1e-09 Score=112.15 Aligned_cols=106 Identities=9% Similarity=-0.004 Sum_probs=70.9
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc---C
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---D 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL---p 788 (951)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++++... +...+++++++|+.+. +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~~ 132 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQN-----------NLSDLIKVVKVPQKTLLMDA 132 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEEEECCTTCSSTTT
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHc-----------CCCccEEEEEcchhhhhhhh
Confidence 56799999999999998888763 1269999999999999999876521 1123599999998762 2
Q ss_pred CC---CCCccEEEEccccccCch-------------hHHHHHHHHHHHccCCC-EEEE
Q 002222 789 SR---LHGFDIGTCLEVIEHMEE-------------DEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 789 ~~---d~sFDlVVcieVLEHL~d-------------D~l~~L~eeL~RvLKPG-vLII 829 (951)
+. +..||+|++.-..++... ++...+...+.++|||| .+.+
T Consensus 133 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 133 LKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp STTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred hhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 33 258999999854443320 11123344588899997 4433
No 202
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.93 E-value=7.9e-09 Score=107.80 Aligned_cols=120 Identities=11% Similarity=0.061 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.|++.+.+++. ++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++... +...+|+
T Consensus 4 ~RL~~l~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~-----------gl~~~i~ 69 (225)
T 3kr9_A 4 KRLELVASFVS--QGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAH-----------GLKEKIQ 69 (225)
T ss_dssp HHHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTEE
T ss_pred HHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCceEE
Confidence 57788877765 55799999999999999999986 4478999999999999999887532 1223799
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCch
Q 002222 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEY 836 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEf 836 (951)
+..+|+.+.-.....||+|+..++ ..+....+.+.....|+|+..+|..|+...
T Consensus 70 ~~~~d~l~~l~~~~~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~ 123 (225)
T 3kr9_A 70 VRLANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPNNRE 123 (225)
T ss_dssp EEECSGGGGCCGGGCCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEESSCH
T ss_pred EEECchhhhcccCcCCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECCCCH
Confidence 999999643222236999987654 323345566678899999844444666443
No 203
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.93 E-value=1.5e-09 Score=113.68 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=80.5
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc--
Q 002222 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-- 786 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d-- 786 (951)
...++.+|||+|||+|.++..+++..++..+|+|+|++++|++.++++.. ...++..+.+|+.+
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--------------~~~ni~~V~~d~~~p~ 139 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--------------DRRNIFPILGDARFPE 139 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--------------TCTTEEEEESCTTCGG
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--------------hhcCeeEEEEeccCcc
Confidence 45688999999999999999999875566899999999999999987642 22478888888765
Q ss_pred -cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 787 -FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 787 -Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+.....+|+|++. +.|-. +...+..++.++|||| .++|+..
T Consensus 140 ~~~~~~~~vDvVf~d--~~~~~--~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 140 KYRHLVEGVDGLYAD--VAQPE--QAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp GGTTTCCCEEEEEEC--CCCTT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceEEEEEEe--ccCCh--hHHHHHHHHHHhccCCCEEEEEEe
Confidence 34456789999863 33333 3344556799999999 6666543
No 204
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.92 E-value=1.9e-09 Score=115.43 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
.+.-|..+.+.+ ..+.+|||||||.|-++..++... +..+|+|+||++.|++.+++++.. .+ .+
T Consensus 119 lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~------------~g-~~ 182 (281)
T 3lcv_B 119 LDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTR------------LN-VP 182 (281)
T ss_dssp HHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHH------------TT-CC
T ss_pred HHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHh------------cC-CC
Confidence 344455555555 347899999999999998887765 458999999999999999988752 12 35
Q ss_pred EEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCC
Q 002222 777 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 834 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNs 834 (951)
.++.+.|...-+ ....||++++.-+++|+++.+..... .++..|+|+.++|+-|-.
T Consensus 183 ~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~k 238 (281)
T 3lcv_B 183 HRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTK 238 (281)
T ss_dssp EEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC
T ss_pred ceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccch
Confidence 788888887665 35789999999999999966665555 499999999999988863
No 205
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.90 E-value=1.7e-09 Score=113.67 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
++...+...++.+|||+|||+|..+..+++......+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~------------~g~~~v~~~~~ 141 (274)
T 3ajd_A 74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR------------MGVLNTIIINA 141 (274)
T ss_dssp HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEES
T ss_pred HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH------------hCCCcEEEEeC
Confidence 344555666788999999999999999987432236999999999999999887652 23448999999
Q ss_pred cccccCC----CCCCccEEEEc------ccccc-----------CchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDS----RLHGFDIGTCL------EVIEH-----------MEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~----~d~sFDlVVci------eVLEH-----------L~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++. ....||+|++. +++.+ +...+ ..+.+.+.++|||| .++++|..
T Consensus 142 D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 142 DMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQ-KELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCH-HHHHHHHHHHEEEEEEEEEEESC
T ss_pred ChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEEECC
Confidence 9988764 25789999985 33332 11223 34556799999998 77777764
No 206
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.90 E-value=1.6e-09 Score=107.75 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=93.6
Q ss_pred HHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 704 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 704 VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
+.+.+. ..++.+|||||||+|.++..++ .+|+|+|+|+. ++++.++
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------------------~~~~~~~ 104 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------------------DPRVTVC 104 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------------------STTEEES
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------------------CceEEEe
Confidence 444444 3456899999999999998773 47999999987 1346788
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccc
Q 002222 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 861 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~ 861 (951)
|+.++++.++.||+|++..++|| . +.. .+.+++.++|+|| .+++.+++..
T Consensus 105 d~~~~~~~~~~fD~v~~~~~l~~-~-~~~-~~l~~~~~~L~~gG~l~i~~~~~~-------------------------- 155 (215)
T 2zfu_A 105 DMAQVPLEDESVDVAVFCLSLMG-T-NIR-DFLEEANRVLKPGGLLKVAEVSSR-------------------------- 155 (215)
T ss_dssp CTTSCSCCTTCEEEEEEESCCCS-S-CHH-HHHHHHHHHEEEEEEEEEEECGGG--------------------------
T ss_pred ccccCCCCCCCEeEEEEehhccc-c-CHH-HHHHHHHHhCCCCeEEEEEEcCCC--------------------------
Confidence 99888888889999999999975 3 443 4445799999999 6666654310
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002222 862 KFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 918 (951)
Q Consensus 862 ~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~~ 918 (951)
..+.+++.. ++.+.||.+....... + ...+.+++|..
T Consensus 156 ---------~~~~~~~~~----~l~~~Gf~~~~~~~~~------~-~~~~~~~~k~~ 192 (215)
T 2zfu_A 156 ---------FEDVRTFLR----AVTKLGFKIVSKDLTN------S-HFFLFDFQKTG 192 (215)
T ss_dssp ---------CSCHHHHHH----HHHHTTEEEEEEECCS------T-TCEEEEEEECS
T ss_pred ---------CCCHHHHHH----HHHHCCCEEEEEecCC------C-eEEEEEEEecC
Confidence 026777774 4567899886643321 1 23567777743
No 207
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.90 E-value=1.2e-09 Score=123.06 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=87.5
Q ss_pred hhhhhhcCC-ChhHHHHHHHHHHHhhcCCCCEEEEEcCc------cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002222 685 DRMEQALFS-PPLSKQRVEYALQHIKESCATTLVDFGCG------SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 757 (951)
Q Consensus 685 eRye~~~F~-PPL~~QR~e~VldlL~~~k~krVLDIGCG------eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrL 757 (951)
++|...++. ...+...|+.++..+. .++.+||||||| +|..+..+++...+..+|+|||+|+.|. .
T Consensus 189 ~~Y~tDK~~~~h~y~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~ 261 (419)
T 3sso_A 189 SRYFTPKFGFLHWFTPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V 261 (419)
T ss_dssp HHTTCTTBSSSCBCHHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G
T ss_pred HHhCCCcccccchHHHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h
Confidence 455555554 4555555666665544 356899999999 6666665654311347999999999972 0
Q ss_pred HhhhhcccccCCCCCCCccEEEEEccccccCCC------CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 758 HSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 758 sa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~------d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
...+++++++|+.++++. +++||+|+|... +|+. +....| ++++++|||| .+++.
T Consensus 262 ---------------~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~-d~~~aL-~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 262 ---------------DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINA-HVRTSF-AALFPHVRPGGLYVIE 323 (419)
T ss_dssp ---------------CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHH-HHHHHH-HHHGGGEEEEEEEEEE
T ss_pred ---------------cCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccch-hHHHHH-HHHHHhcCCCeEEEEE
Confidence 124899999999998876 689999999754 4443 554555 5799999999 77777
Q ss_pred ecCCc
Q 002222 831 TPNYE 835 (951)
Q Consensus 831 TPNsE 835 (951)
.....
T Consensus 324 Dl~ts 328 (419)
T 3sso_A 324 DMWTA 328 (419)
T ss_dssp CGGGG
T ss_pred ecccc
Confidence 66543
No 208
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.90 E-value=3.2e-09 Score=109.22 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
-+++..++...++++|||||||+|..+..+++..++..+|+++|+++.+++.|++++... +...+++++
T Consensus 59 ~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~~ 127 (237)
T 3c3y_A 59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-----------GVEHKINFI 127 (237)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCGGGEEEE
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 344444455567889999999999999999886433479999999999999999877531 123479999
Q ss_pred Ecccccc-CC------CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 781 DGSITVF-DS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 781 qGDa~dL-p~------~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
++|+.+. +. ..+.||+|++...- .....+.+.+.++|+|| .+++.
T Consensus 128 ~gda~~~l~~l~~~~~~~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 128 ESDAMLALDNLLQGQESEGSYDFGFVDADK-----PNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp ESCHHHHHHHHHHSTTCTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCHHHHHHHHHhccCCCCCcCEEEECCch-----HHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999764 21 14789999976432 22345556799999999 55443
No 209
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.90 E-value=6.2e-09 Score=111.73 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-C
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~ 789 (951)
..+++|||||||+|..+..++++. +..+|++||+|+.+++.|++++.....+ ....++++++.+|+.+.. .
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~-------~~~~~rv~~~~~D~~~~l~~ 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAG-------SYDDPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSS-------CTTCTTCCEECSCSCC---C
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccc-------cccCCceEEEEChHHHHHhh
Confidence 457899999999999999999985 4579999999999999999876432100 012358999999987753 3
Q ss_pred CCCCccEEEEccccccCchhHH--HHHHHHHHHccCCC-EEEEEe
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l--~~L~eeL~RvLKPG-vLIIST 831 (951)
..+.||+|++...-...+...+ ..|.+.+.+.|+|| .+++.+
T Consensus 154 ~~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 154 TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CCCCEEEEEECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 4678999999544322222221 45667799999999 555543
No 210
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.88 E-value=8.3e-09 Score=101.23 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~-~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
.++.+|||+|||+|.++..+++..++ ..+|+|+|+|+.. ...++++.++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------------------~~~~v~~~~~d~~~~~~ 77 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------------------PIPNVYFIQGEIGKDNM 77 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------------------CCTTCEEEECCTTTTSS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------------------CCCCceEEEccccchhh
Confidence 35679999999999999999876521 3799999999821 0136889999998876
Q ss_pred ------------------------CCCCCccEEEEccccccCch---hHH------HHHHHHHHHccCCC-EEEEEecCC
Q 002222 789 ------------------------SRLHGFDIGTCLEVIEHMEE---DEA------SQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 789 ------------------------~~d~sFDlVVcieVLEHL~d---D~l------~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+....||+|++..++++... +.. ..+.+++.++|||| .+++.+...
T Consensus 78 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 78 NNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp CCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 45678999999888776421 211 12455699999999 666666543
No 211
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.87 E-value=4e-09 Score=111.05 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+++.+++.|++++.. .+..++.++++|+.+.+ .
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~------------n~l~~~~~~~~d~~~~~-~ 183 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKL------------NKLNNVIPILADNRDVE-L 183 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHH------------TTCSSEEEEESCGGGCC-C
T ss_pred CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEECChHHcC-c
Confidence 467899999999999999999875 236999999999999999987642 24457899999999883 3
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
...||+|++.... + ...+...+.+.|+|| .++++..
T Consensus 184 ~~~~D~Vi~d~p~-----~-~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 184 KDVADRVIMGYVH-----K-THKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp TTCEEEEEECCCS-----S-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCceEEEECCcc-----c-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 6789999987653 1 123345688999999 5555544
No 212
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.87 E-value=7.5e-09 Score=109.82 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+++|||||||+|.++..++++. +..+|+++|+++.+++.|++++...... ....+++++.+|+.+. +.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~l~~ 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCG--------YEDKRVNVFIEDASKFLEN 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGG--------GGSTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccc--------cCCCcEEEEECChHHHHHh
Confidence 466899999999999999999875 4579999999999999999875321000 0135899999999764 22
Q ss_pred CCCCccEEEEccccccCchhHH--HHHHHHHHHccCCC-EEEEEec
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l--~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+.||+|++.....+.+...+ ..+.+.+.+.|+|| .+++.+.
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 3578999998544332222222 45667799999999 5555543
No 213
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.86 E-value=8.3e-09 Score=111.05 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc-cCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d-Lp~ 789 (951)
..+++|||||||+|.++..++++. +..+|++||+++.+++.|++++...... ....+++++.+|+.+ ++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~--------~~~~rv~v~~~Da~~~l~~ 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIG--------YSSSKLTLHVGDGFEFMKQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcc--------cCCCcEEEEECcHHHHHhh
Confidence 467899999999999999999885 4579999999999999999876421000 013589999999876 344
Q ss_pred CCCCccEEEEccccccCchh---HHHHHHHHHHHccCCC-EEEEEe
Q 002222 790 RLHGFDIGTCLEVIEHMEED---EASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD---~l~~L~eeL~RvLKPG-vLIIST 831 (951)
..+.||+|++... .+..+. ....+.+.+.++|+|| .+++.+
T Consensus 165 ~~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 165 NQDAFDVIITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp CSSCEEEEEEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceEEEECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 4678999998543 222211 1134556799999999 555554
No 214
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.86 E-value=2.1e-09 Score=110.99 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~---g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+...+...++.+|||||||+|..+..|++. ..+..+|+|||+|+.|++.|+. + ..+++++
T Consensus 73 l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------------~~~v~~~ 135 (236)
T 2bm8_A 73 YHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------------MENITLH 135 (236)
T ss_dssp HHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G----------------CTTEEEE
T ss_pred HHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c----------------CCceEEE
Confidence 333344446789999999999999999886 1134799999999999988751 1 1479999
Q ss_pred Ecccccc---CCCC-CCccEEEEccccccCchhHHHHHHHHHHH-ccCCC-EEEEEe
Q 002222 781 DGSITVF---DSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLS-SFRPR-ILIVST 831 (951)
Q Consensus 781 qGDa~dL---p~~d-~sFDlVVcieVLEHL~dD~l~~L~eeL~R-vLKPG-vLIIST 831 (951)
++|+.+. +... ..||+|++... |. +. ..+..++.+ +|||| .+++..
T Consensus 136 ~gD~~~~~~l~~~~~~~fD~I~~d~~--~~--~~-~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 136 QGDCSDLTTFEHLREMAHPLIFIDNA--HA--NT-FNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEESS--CS--SH-HHHHHHHHHHTCCTTCEEEECS
T ss_pred ECcchhHHHHHhhccCCCCEEEECCc--hH--hH-HHHHHHHHHhhCCCCCEEEEEe
Confidence 9999884 4433 37999998665 43 22 234456887 99999 666644
No 215
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.85 E-value=1.9e-08 Score=111.40 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc--cEEEEEccccccC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~--nVtf~qGDa~dLp 788 (951)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+.. +++++++|+.+..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~------------n~~~~~~v~~~~~D~~~~l 276 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEA------------NHLDMANHQLVVMDVFDYF 276 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHH------------TTCCCTTEEEEESCHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCccceEEEECCHHHHH
Confidence 4678999999999999999998762 5899999999999999987652 2333 7999999997632
Q ss_pred C----CCCCccEEEEcccc-----ccCch--hHHHHHHHHHHHccCCC-EEEEEec
Q 002222 789 S----RLHGFDIGTCLEVI-----EHMEE--DEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 789 ~----~d~sFDlVVcieVL-----EHL~d--D~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
. ....||+|++.--. .++.. .....+...+.++|+|| .+++++.
T Consensus 277 ~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 277 KYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp HHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1 24589999984211 22221 22233455688999999 5555543
No 216
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.85 E-value=1.6e-08 Score=107.38 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.+++++... +...++++
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~ 81 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGT-----------PVASKLQV 81 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTS-----------TTGGGEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEE
Confidence 34566677766778899999999999999999887 69999999999999998875311 11258999
Q ss_pred EEccccccCCCCCCccEEEEcc
Q 002222 780 FDGSITVFDSRLHGFDIGTCLE 801 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcie 801 (951)
+++|+.+++++ .||+|++..
T Consensus 82 ~~~D~~~~~~~--~fD~vv~nl 101 (285)
T 1zq9_A 82 LVGDVLKTDLP--FFDTCVANL 101 (285)
T ss_dssp EESCTTTSCCC--CCSEEEEEC
T ss_pred EEcceecccch--hhcEEEEec
Confidence 99999887654 799999953
No 217
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.84 E-value=4.3e-08 Score=108.28 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC-c-cEEEEEccccccC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-K-SAVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~-~-nVtf~qGDa~dLp 788 (951)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. . +++++++|+.+..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~------------ngl~~~~v~~~~~D~~~~~ 284 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLL 284 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCGGGEEEEESCHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCccceEEEECCHHHHH
Confidence 4678999999999999999999852 6999999999999999987652 233 3 7999999998753
Q ss_pred CC----CCCccEEEEcc--------ccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 789 SR----LHGFDIGTCLE--------VIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 789 ~~----d~sFDlVVcie--------VLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
.. ...||+|++.- .+.+..... ..+...+.+.|+|| .+++++
T Consensus 285 ~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 285 RTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGY-KDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp HHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHH-HHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHH-HHHHHHHHHhcCCCcEEEEEe
Confidence 21 46899999852 112222233 34445689999999 555554
No 218
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.84 E-value=1.2e-08 Score=109.99 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+++|||||||+|.++..++++. +..+|++||+++.+++.|++++...... .....+++++.+|+.+. +.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~-------~~~~~~v~~~~~D~~~~l~~ 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQG-------AFDDPRAVLVIDDARAYLER 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTT-------GGGCTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc-------cccCCceEEEEchHHHHHHh
Confidence 466899999999999999999874 3479999999999999999875421000 00135899999999873 33
Q ss_pred CCCCccEEEEcccccc---CchhH--HHHHHHHHHHccCCC-EEEEEe
Q 002222 790 RLHGFDIGTCLEVIEH---MEEDE--ASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 790 ~d~sFDlVVcieVLEH---L~dD~--l~~L~eeL~RvLKPG-vLIIST 831 (951)
..+.||+|++....++ -+... ...+.+.+.++|+|| .+++.+
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 4678999999755433 11111 145566799999999 555543
No 219
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.83 E-value=1.6e-08 Score=110.47 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-C-
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p- 788 (951)
..+++|||||||+|.++..++++. +..+|++||+|+.+++.|++++.....+ -...+++++++|+.+. +
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~g--------l~~~rv~~~~~D~~~~l~~ 189 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIG--------YEDPRVNLVIGDGVAFLKN 189 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGSTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc--------cCCCcEEEEECCHHHHHHh
Confidence 467899999999999999999875 3479999999999999999876421000 0124799999998764 2
Q ss_pred CCCCCccEEEEccccccCchhH--HHHHHHHHHHccCCC-EEEEE
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPG-vLIIS 830 (951)
...+.||+|++...-.+-..+. ...+.+.+.++|+|| .+++.
T Consensus 190 ~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 190 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 2357899999854321111111 245566799999999 55554
No 220
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.83 E-value=1.7e-08 Score=107.95 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
..+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+..++++
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~------------~~~~~v~~ 94 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLY------------EGYNNLEV 94 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHH------------TTCCCEEC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCceEE
Confidence 34566666666778899999999999999999986 7999999999999999887642 12357999
Q ss_pred EEccccccCCCCCCccEEEEcccc
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVI 803 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVL 803 (951)
+++|+.++++ ..||+|++.-..
T Consensus 95 ~~~D~~~~~~--~~~D~Vv~n~py 116 (299)
T 2h1r_A 95 YEGDAIKTVF--PKFDVCTANIPY 116 (299)
T ss_dssp ----CCSSCC--CCCSEEEEECCG
T ss_pred EECchhhCCc--ccCCEEEEcCCc
Confidence 9999988765 489999986443
No 221
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.82 E-value=7.5e-09 Score=109.53 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+++|||||||+|.++..++++. +..+|++||+++.+++.|++++...... ...++++++.+|+.+. +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~--------~~~~rv~v~~~D~~~~l~~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMHIAK 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHHHHT
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccc--------cCCCceEEEECcHHHHHhh
Confidence 357899999999999999999874 3479999999999999999876421100 1235899999998763 33
Q ss_pred CCCCccEEEEccccccCchhH--HHHHHHHHHHccCCC-EEEEEe
Q 002222 790 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPG-vLIIST 831 (951)
..+.||+|++.-...+.+... ...+.+.+.+.|+|| .+++.+
T Consensus 145 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 457899999954332211110 124556799999999 555544
No 222
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.81 E-value=1.2e-08 Score=111.40 Aligned_cols=107 Identities=7% Similarity=0.029 Sum_probs=77.5
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--CC
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SR 790 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--~~ 790 (951)
+.+|||||||+|.++..+++.. +..+|++||+++.+++.|++++. .....+++++.+|+.++. ..
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~------------~~~~~rv~v~~~Da~~~l~~~~ 156 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFD------------IPRAPRVKIRVDDARMVAESFT 156 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSC------------CCCTTTEEEEESCHHHHHHTCC
T ss_pred CCEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcc------------ccCCCceEEEECcHHHHHhhcc
Confidence 3499999999999999999843 23689999999999999988653 112458999999998753 34
Q ss_pred CCCccEEEEccccccCchhHH--HHHHHHHHHccCCC-EEEEEec
Q 002222 791 LHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l--~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+.||+|++....++-.+..+ ..|.+.+.++|+|| .+++.+.
T Consensus 157 ~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 157 PASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 578999998532221111111 35566799999999 5555544
No 223
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.81 E-value=1.7e-08 Score=113.79 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=89.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||.|..+..+++..+...+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~------------~g~~~v~~~~~ 317 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR------------MGIKIVKPLVK 317 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------TTCCSEEEECS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEEEc
Confidence 445556667788999999999999999987642226899999999999999987652 23457999999
Q ss_pred cccccC--CCCCCccEEEE------ccccccCchhH--------------HHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFD--SRLHGFDIGTC------LEVIEHMEEDE--------------ASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp--~~d~sFDlVVc------ieVLEHL~dD~--------------l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++ +..+.||+|++ .+++.+.++.. ...+.+.+.++|||| .++++|..
T Consensus 318 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 318 DARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 998876 34468999996 45666554211 135566799999998 77777664
No 224
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.80 E-value=1.3e-08 Score=110.40 Aligned_cols=112 Identities=13% Similarity=0.237 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+.+|||||||+|.++..++++. +..+|+++|+|+.+++.|++++...... ....+++++++|+.+. +.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~--------~~~~~v~~~~~D~~~~l~~ 185 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCG--------YEDKRVNVFIEDASKFLEN 185 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGG--------GGSTTEEEEESCHHHHHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc--------cCCCcEEEEEccHHHHHhh
Confidence 456899999999999999999874 3479999999999999999875421000 1135899999998763 23
Q ss_pred CCCCccEEEEccccccCch-hHH--HHHHHHHHHccCCC-EEEEEec
Q 002222 790 RLHGFDIGTCLEVIEHMEE-DEA--SQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~d-D~l--~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+.||+|++... +++.+ +.. ..+.+.+.+.|+|| .+++...
T Consensus 186 ~~~~fDvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 186 VTNTYDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CCSCEEEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCceEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 3578999998542 22221 111 35556799999999 5555443
No 225
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.79 E-value=1.3e-08 Score=110.13 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=87.5
Q ss_pred HHHHHHh-hcCCCCEEEEEcCccchhHHHHhcCCCC----CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 702 EYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTA----LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 702 e~VldlL-~~~k~krVLDIGCGeG~ll~~LAk~g~~----~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
..+++.+ ...++.+|||+|||+|.++..+++.... ..+++|+|+++.+++.|+.++... +. +
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~------------g~-~ 185 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------------RQ-K 185 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------------TC-C
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC------------CC-C
Confidence 3344433 3345679999999999999888765421 168999999999999998875421 22 6
Q ss_pred EEEEEccccccCCCCCCccEEEEccccccCchhHH----------------HHHHHHHHHccCCC-EEEEEecCC
Q 002222 777 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA----------------SQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l----------------~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+.+.++|..... ....||+|++.--+.+++.++. ..|.+.+.+.|+|| .+++.+|+.
T Consensus 186 ~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 186 MTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 889999987643 3578999999877766653332 24667799999998 888888874
No 226
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.79 E-value=2.6e-08 Score=106.50 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+.+|||||||+|.++..++++. +..+|+++|+|+.+++.|++++...... ....+++++.+|+.+. +.
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~l~~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG--------FDDPRAEIVIANGAEYVRK 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHGGG
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc--------cCCCceEEEECcHHHHHhh
Confidence 356899999999999999999874 3479999999999999999876421000 1135899999998763 33
Q ss_pred CCCCccEEEEcccccc-Cchh---HHHHHHHHHHHccCCC-EEEEEec
Q 002222 790 RLHGFDIGTCLEVIEH-MEED---EASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEH-L~dD---~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+.||+|++.-. .+ +... ....+.+.+.++|+|| .+++.+.
T Consensus 160 ~~~~fD~Ii~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 160 FKNEFDVIIIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEEcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 4578999997432 22 2211 0135556799999999 5555543
No 227
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.78 E-value=3.4e-08 Score=110.77 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
..+..++.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+..
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~ 334 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARL------------NGLQ 334 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH------------TTCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCC
Confidence 455566777777776677899999999999999999986 7999999999999999987642 2344
Q ss_pred cEEEEEccccc----cCCCCCCccEEEEc
Q 002222 776 SAVLFDGSITV----FDSRLHGFDIGTCL 800 (951)
Q Consensus 776 nVtf~qGDa~d----Lp~~d~sFDlVVci 800 (951)
+++|+++|+.+ +++..+.||+|++.
T Consensus 335 ~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp SEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred ceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 89999999987 23455789999984
No 228
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.77 E-value=4.4e-08 Score=108.07 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=79.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc-cEEEEEccccccCC-
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFDGSITVFDS- 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~-nVtf~qGDa~dLp~- 789 (951)
++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+.. +++++++|+.+...
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~------------n~~~~~v~~~~~d~~~~~~~ 282 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKL------------NGVEDRMKFIVGSAFEEMEK 282 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEESCHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCccceEEECCHHHHHHH
Confidence 678999999999999999998752 6999999999999999987652 2333 79999999977543
Q ss_pred ---CCCCccEEEEcccc--------ccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 790 ---RLHGFDIGTCLEVI--------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 790 ---~d~sFDlVVcieVL--------EHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
....||+|++.--. .+.. .....+...+.++|+|| .+++++.+
T Consensus 283 ~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 283 LQKKGEKFDIVVLDPPAFVQHEKDLKAGL-RAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp HHHTTCCEEEEEECCCCSCSSGGGHHHHH-HHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HHhhCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 25689999984211 1111 22334455799999999 66666654
No 229
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.76 E-value=1.7e-08 Score=115.44 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=87.9
Q ss_pred HHHHHhhcC--CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 703 YALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 703 ~VldlL~~~--k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+...+... ++.+|||+|||+|..+..|++..+....|+|+|+|+.+++.+++++.. .+..++.+.
T Consensus 106 l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r------------~g~~nv~~~ 173 (479)
T 2frx_A 106 LPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR------------CGISNVALT 173 (479)
T ss_dssp HHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH------------HTCCSEEEE
T ss_pred HHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEE
Confidence 344555555 788999999999999999988642336899999999999999988753 234579999
Q ss_pred EccccccCC-CCCCccEEEE------ccccccCch-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002222 781 DGSITVFDS-RLHGFDIGTC------LEVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 781 qGDa~dLp~-~d~sFDlVVc------ieVLEHL~d-------D-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++|+.+++. ..+.||+|++ .+++.+.++ + ....+.+.+.++|||| .++++|..
T Consensus 174 ~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 174 HFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 999988764 4578999997 234443321 1 1234556789999998 77777653
No 230
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.76 E-value=2.2e-08 Score=108.54 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+++|||||||+|..+..++++. +..+|+++|+++.+++.|++++...... ....+++++.+|+.+. +.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~--------~~~~rv~~~~~D~~~~l~~ 177 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG--------FSHPKLDLFCGDGFEFLKN 177 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG--------GGCTTEEEECSCHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccc--------cCCCCEEEEEChHHHHHHh
Confidence 456899999999999999999875 4579999999999999999875321000 0135899999999763 33
Q ss_pred CCCCccEEEEccccccCchhH-H--HHHHHHHHHccCCC-EEEEEe
Q 002222 790 RLHGFDIGTCLEVIEHMEEDE-A--SQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~-l--~~L~eeL~RvLKPG-vLIIST 831 (951)
..+.||+|++.. .+|+.++. + ..+.+.+.++|+|| .+++.+
T Consensus 178 ~~~~fD~Ii~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 178 HKNEFDVIITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CTTCEEEEEECC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCceEEEEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 457899999854 34443222 1 45667799999999 555543
No 231
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.75 E-value=2.2e-08 Score=106.05 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
..+++|||||||+|.++..+++++ ..+|++||+++.+++.|++++ ....... .........+++++.+|+.+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~-~~~~~l~-~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLI-KIDNGLL-EAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHT-CTTTTHH-HHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHH-hhccccc-cccccCCCCcEEEEECchHHHhcc
Confidence 467899999999999999999883 379999999999999999875 2100000 000000235899999998663211
Q ss_pred CCCccEEEEccccccCch-hH--HHHHHHHHHHccCCC-EEEEEe
Q 002222 791 LHGFDIGTCLEVIEHMEE-DE--ASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~d-D~--l~~L~eeL~RvLKPG-vLIIST 831 (951)
.+.||+|++.... +..+ .. ...+.+.+.++|+|| .+++.+
T Consensus 150 ~~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 NRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5789999985442 3221 11 145566799999999 555543
No 232
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.73 E-value=5.4e-08 Score=107.15 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=78.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~- 790 (951)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++.. .+..+++++++|+.+....
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~------------n~~~~~~~~~~d~~~~~~~~ 273 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARL------------NGLGNVRVLEANAFDLLRRL 273 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHH------------TTCTTEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCCceEEECCHHHHHHHH
Confidence 66799999999999999998874 7999999999999999987652 2344599999999875432
Q ss_pred ---CCCccEEEEccc--------cccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 791 ---LHGFDIGTCLEV--------IEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 ---d~sFDlVVcieV--------LEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...||+|++.-- +.... .....+...+.++|+|| .+++++..
T Consensus 274 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 274 EKEGERFDLVVLDPPAFAKGKKDVERAY-RAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HhcCCCeeEEEECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 568999998321 11111 22344556799999999 66666543
No 233
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.72 E-value=9.9e-09 Score=109.34 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+..+.+.....++.+|||||||+|.++..+++. .+|+|||+++ |+..++++. .. ......++.++
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~---~~-------~~~~~~~v~~~ 135 (276)
T 2wa2_A 71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKP---RL-------VETFGWNLITF 135 (276)
T ss_dssp HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCC---CC-------CCCTTGGGEEE
T ss_pred HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhch---hh-------hhhcCCCeEEE
Confidence 344444322346789999999999999999987 3799999998 643332110 00 00111278999
Q ss_pred --EccccccCCCCCCccEEEEccccccCch---hHHH--HHHHHHHHccCCCE---EEEEecC
Q 002222 781 --DGSITVFDSRLHGFDIGTCLEVIEHMEE---DEAS--QFGNIVLSSFRPRI---LIVSTPN 833 (951)
Q Consensus 781 --qGDa~dLp~~d~sFDlVVcieVLEHL~d---D~l~--~L~eeL~RvLKPGv---LIISTPN 833 (951)
++|+.+++ +..||+|+|..+ ++... +... .+.+.+.++||||+ +++.+..
T Consensus 136 ~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 136 KSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred eccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 99998876 578999999877 44331 1111 23466889999975 6665554
No 234
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.71 E-value=7.2e-08 Score=105.83 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc-cCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d-Lp~ 789 (951)
.++.+|||+| |+|.++..+++.+ +..+|+|+|+|+.|++.|++++... +..+++++++|+.+ ++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~------------g~~~v~~~~~D~~~~l~~ 236 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEI------------GYEDIEIFTFDLRKPLPD 236 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHH------------TCCCEEEECCCTTSCCCT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------------CCCCEEEEEChhhhhchh
Confidence 3578999999 9999999998875 3369999999999999999876531 22379999999988 664
Q ss_pred -CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEecC
Q 002222 790 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPN 833 (951)
Q Consensus 790 -~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTPN 833 (951)
..++||+|++.-.+++.. ...+.+.+.++|+|| .+++++-.
T Consensus 237 ~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 237 YALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp TTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred hccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEec
Confidence 356899999976544332 356667799999996 34665544
No 235
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.70 E-value=5.2e-08 Score=94.98 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCC--------ceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE-E
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTAL--------EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF-D 781 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~--------~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~-q 781 (951)
.++.+|||+|||+|.++..+++..+.. .+|+|+|+|+.+ ...++++. +
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------------------~~~~~~~~~~ 77 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------------------PLEGATFLCP 77 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------------------CCTTCEEECS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------------------cCCCCeEEEe
Confidence 457899999999999999999874222 689999999831 01257888 8
Q ss_pred ccccccC--------CCCCCccEEEEccccc----cCchhH-----HHHHHHHHHHccCCC-EEEEEecCC
Q 002222 782 GSITVFD--------SRLHGFDIGTCLEVIE----HMEEDE-----ASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 782 GDa~dLp--------~~d~sFDlVVcieVLE----HL~dD~-----l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+|+.+.+ +...+||+|+|...++ |..+.. ...+.+++.++|||| .+++.+...
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 8887653 2346899999965443 322221 024556799999999 777766654
No 236
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.70 E-value=3.1e-08 Score=106.86 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+++.+++.+++++. ...++++
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~--------------~~~~v~v 100 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKE--------------LYNNIEI 100 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHH--------------HCSSEEE
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhc--------------cCCCeEE
Confidence 34566777777788899999999999999999986 799999999999999988764 1247999
Q ss_pred EEccccccCCCCCCccEEEEccc
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEV 802 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieV 802 (951)
+++|+.++++....||+|+++--
T Consensus 101 i~gD~l~~~~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 101 IWGDALKVDLNKLDFNKVVANLP 123 (295)
T ss_dssp EESCTTTSCGGGSCCSEEEEECC
T ss_pred EECchhhCCcccCCccEEEEeCc
Confidence 99999998887778999997643
No 237
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.70 E-value=1.3e-08 Score=107.75 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002222 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
....+..+.+.....++.+|||||||+|.++..+++. .+|+|||+++ |+..+++. . .. ......+
T Consensus 59 ~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~--~-~~-------~~~~~~~ 123 (265)
T 2oxt_A 59 GTAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEV--P-RI-------TESYGWN 123 (265)
T ss_dssp HHHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCC--C-CC-------CCBTTGG
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhh--h-hh-------hhccCCC
Confidence 3344455555433346789999999999999999887 4799999998 54332110 0 00 0011127
Q ss_pred EEEE--EccccccCCCCCCccEEEEccccccCch---hHHH--HHHHHHHHccCCCE---EEEEecC
Q 002222 777 AVLF--DGSITVFDSRLHGFDIGTCLEVIEHMEE---DEAS--QFGNIVLSSFRPRI---LIVSTPN 833 (951)
Q Consensus 777 Vtf~--qGDa~dLp~~d~sFDlVVcieVLEHL~d---D~l~--~L~eeL~RvLKPGv---LIISTPN 833 (951)
+.++ ++|+.+++ +..||+|+|..+ ++... +... .+.+.+.++||||+ +++.+..
T Consensus 124 v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 124 IVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp GEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 8999 99998876 578999999876 54432 1111 14466889999975 5665654
No 238
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.68 E-value=2.2e-08 Score=114.25 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+...+|+|+|+|+.+++.+++++.. .+.. +.+.++
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r------------~G~~-v~~~~~ 158 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER------------WGAP-LAVTQA 158 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------HCCC-CEEECS
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------cCCe-EEEEEC
Confidence 445566667889999999999999999987643336899999999999999988753 2344 899999
Q ss_pred cccccCC-CCCCccEEEE------ccccccCch-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDS-RLHGFDIGTC------LEVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~-~d~sFDlVVc------ieVLEHL~d-------D-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++. ..+.||+|++ .+++.+-++ + ....+.+.+.++|||| .++.+|..
T Consensus 159 Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 159 PPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9988762 4678999995 234433331 1 1145566799999998 77776653
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.67 E-value=4.9e-08 Score=109.20 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++.. .+. ++++.++
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~------------~g~-~~~~~~~ 302 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKR------------LGM-KATVKQG 302 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHH------------TTC-CCEEEEC
T ss_pred HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHH------------cCC-CeEEEeC
Confidence 455566667888999999999999999998763 37999999999999999987652 122 5789999
Q ss_pred cccccC--CCCCCccEEEE------ccccccCchh--------------HHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFD--SRLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp--~~d~sFDlVVc------ieVLEHL~dD--------------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++ +..+.||+|++ .+++.+.++. ....+.+.+.++|||| .++++|..
T Consensus 303 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 303 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred chhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998876 44578999996 3566665521 1135566799999998 77777753
No 240
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.66 E-value=7.4e-08 Score=107.47 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=98.3
Q ss_pred hhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCC------------------------------
Q 002222 687 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA------------------------------ 736 (951)
Q Consensus 687 ye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~------------------------------ 736 (951)
|....-.-|+.+.....++......++..|||.+||+|.++..++..+..
T Consensus 176 yr~~~~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~ 255 (393)
T 3k0b_A 176 YRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAE 255 (393)
T ss_dssp TTTTSCSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHH
Confidence 34334445777777777877777777889999999999998777654311
Q ss_pred -------CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEcccc-ccCch
Q 002222 737 -------LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHMEE 808 (951)
Q Consensus 737 -------~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVL-EHL~d 808 (951)
..+|+|+|+++.|++.|++++... +...++++.++|+.+++.. ..||+|++.--. +.+..
T Consensus 256 ~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~-----------gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~ 323 (393)
T 3k0b_A 256 DLANYDQPLNIIGGDIDARLIEIAKQNAVEA-----------GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLED 323 (393)
T ss_dssp HHCCTTCCCCEEEEESCHHHHHHHHHHHHHT-----------TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHH
T ss_pred HhhcccCCceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCC
Confidence 145999999999999999876531 1223699999999998764 489999998221 22321
Q ss_pred -hHHHHHHHHHHHccCC--C-EEEEEecCCchhHHH
Q 002222 809 -DEASQFGNIVLSSFRP--R-ILIVSTPNYEYNAIL 840 (951)
Q Consensus 809 -D~l~~L~eeL~RvLKP--G-vLIISTPNsEfN~lf 840 (951)
+.+..+.+.+.+.||+ | .+.+.|++.++...+
T Consensus 324 ~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~~~~ 359 (393)
T 3k0b_A 324 EEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVY 359 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCEEEEEECCTTHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHh
Confidence 3334444455556655 6 777778887765443
No 241
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.65 E-value=1.3e-07 Score=102.79 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=85.1
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC
Q 002222 690 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 769 (951)
Q Consensus 690 ~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~ 769 (951)
..|.+.....|. .+.+.+ .++.+|||+|||+|.++.. ++.+ .+|+|+|+|+.+++.|++++..
T Consensus 176 ~~~~~~~~~er~-~i~~~~--~~~~~VLDlg~G~G~~~l~-a~~~---~~V~~vD~s~~ai~~a~~n~~~---------- 238 (336)
T 2yx1_A 176 VYFSPRLGGERA-RIMKKV--SLNDVVVDMFAGVGPFSIA-CKNA---KKIYAIDINPHAIELLKKNIKL---------- 238 (336)
T ss_dssp SCCCGGGHHHHH-HHHHHC--CTTCEEEETTCTTSHHHHH-TTTS---SEEEEEESCHHHHHHHHHHHHH----------
T ss_pred hccCCccHHHHH-HHHHhc--CCCCEEEEccCccCHHHHh-ccCC---CEEEEEECCHHHHHHHHHHHHH----------
Confidence 345555556665 344443 3678999999999999999 8743 7999999999999999987652
Q ss_pred CCCCC-ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 770 PCTDV-KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 770 Pr~~~-~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.+. .+++++++|+.+.. ..||+|++.-- +.. ..+.+.+.++|+|| .+++.+...
T Consensus 239 --n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP--~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 239 --NKLEHKIIPILSDVREVD---VKGNRVIMNLP--KFA----HKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp --TTCTTTEEEEESCGGGCC---CCEEEEEECCT--TTG----GGGHHHHHHHEEEEEEEEEEEEES
T ss_pred --cCCCCcEEEEECChHHhc---CCCcEEEECCc--HhH----HHHHHHHHHHcCCCCEEEEEEeec
Confidence 122 47999999998876 78999998521 111 14445688999998 566655543
No 242
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.64 E-value=1.5e-07 Score=104.93 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=96.6
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCC------------------------------------
Q 002222 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA------------------------------------ 736 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~------------------------------------ 736 (951)
.-|+.+.....++.+....++..|||.+||+|.++..++..+..
T Consensus 175 ~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 254 (384)
T 3ldg_A 175 GAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD 254 (384)
T ss_dssp -CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence 34677766667777777777889999999999999877643311
Q ss_pred -CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEcccc-ccCc-hhHHHH
Q 002222 737 -LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHME-EDEASQ 813 (951)
Q Consensus 737 -~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVL-EHL~-dD~l~~ 813 (951)
..+|+|+|+++.|++.|++++... +....+++.++|+.+++.. ..||+|++.-=. +.+. .+.+..
T Consensus 255 ~~~~v~GvDid~~al~~Ar~Na~~~-----------gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ 322 (384)
T 3ldg_A 255 IQLDISGFDFDGRMVEIARKNAREV-----------GLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDI 322 (384)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHH
Confidence 135999999999999999886531 1223699999999998764 489999997221 2232 234455
Q ss_pred HHHHHHHccCC--C-EEEEEecCCchhHHH
Q 002222 814 FGNIVLSSFRP--R-ILIVSTPNYEYNAIL 840 (951)
Q Consensus 814 L~eeL~RvLKP--G-vLIISTPNsEfN~lf 840 (951)
+.+.+.+.||+ | .+.+.|++.++...+
T Consensus 323 ly~~lg~~lk~~~g~~~~iit~~~~l~~~~ 352 (384)
T 3ldg_A 323 LYNEMGETFAPLKTWSQFILTNDTDFEQKF 352 (384)
T ss_dssp HHHHHHHHHTTCTTSEEEEEESCTTHHHHH
T ss_pred HHHHHHHHHhhCCCcEEEEEECCHHHHHHh
Confidence 55567777766 6 788888887765544
No 243
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.64 E-value=2.2e-07 Score=104.62 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
.++.+.+ ..++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+.. +++
T Consensus 281 l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~------------ngl~-v~~ 341 (425)
T 2jjq_A 281 LVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEI------------NNVD-AEF 341 (425)
T ss_dssp HHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------HTCC-EEE
T ss_pred HHHHhhc---cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cCCc-EEE
Confidence 3444444 3467899999999999999999986 6999999999999999887642 1333 999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+++|+.++... .||+|++.---..+. ..+.+.+ +.|+|+ .++++.
T Consensus 342 ~~~d~~~~~~~--~fD~Vv~dPPr~g~~----~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 342 EVASDREVSVK--GFDTVIVDPPRAGLH----PRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp EECCTTTCCCT--TCSEEEECCCTTCSC----HHHHHHH-HHHCCSEEEEEES
T ss_pred EECChHHcCcc--CCCEEEEcCCccchH----HHHHHHH-HhcCCCcEEEEEC
Confidence 99999887533 899999854322232 1233333 358999 555553
No 244
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.63 E-value=1.4e-07 Score=98.03 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.+++++. ...++++
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~--------------~~~~v~~ 80 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV--------------DHDNFQV 80 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT--------------TCCSEEE
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhc--------------cCCCeEE
Confidence 34556666666678899999999999999999887 799999999999999987642 1247999
Q ss_pred EEccccccCCCC-CCccEEEE
Q 002222 780 FDGSITVFDSRL-HGFDIGTC 799 (951)
Q Consensus 780 ~qGDa~dLp~~d-~sFDlVVc 799 (951)
+++|+.++++.. ..|+ |++
T Consensus 81 ~~~D~~~~~~~~~~~~~-vv~ 100 (244)
T 1qam_A 81 LNKDILQFKFPKNQSYK-IFG 100 (244)
T ss_dssp ECCCGGGCCCCSSCCCE-EEE
T ss_pred EEChHHhCCcccCCCeE-EEE
Confidence 999999988764 3453 444
No 245
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.62 E-value=6.9e-08 Score=101.98 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
..+++|||||||+|.++..++++ + .+|+++|+++.+++.|++.+...... ...+++++..+|+.+..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~--------~~~~rv~~~~~D~~~~~-- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAKQLLDLDI-- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHH--------HTCTTEEEESSGGGSCC--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccc--------cCCCeEEEEechHHHHH--
Confidence 35689999999999999999988 3 79999999999999998754311000 02357999999998765
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+.||+|++.. .++. . +.+.+.+.|+|| .+++.
T Consensus 138 -~~fD~Ii~d~-----~dp~-~-~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 138 -KKYDLIFCLQ-----EPDI-H-RIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp -CCEEEEEESS-----CCCH-H-HHHHHHTTEEEEEEEEEE
T ss_pred -hhCCEEEECC-----CChH-H-HHHHHHHhcCCCcEEEEE
Confidence 7899999862 2222 2 556799999999 55554
No 246
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.60 E-value=1.4e-07 Score=99.46 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=65.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.+++++. ...++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~--------------~~~~v~~ 79 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYN--------------QQKNITI 79 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHT--------------TCTTEEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHh--------------hCCCcEE
Confidence 34456777777788999999999999999999987 799999999999999988753 1348999
Q ss_pred EEccccccCCCC----CCcc
Q 002222 780 FDGSITVFDSRL----HGFD 795 (951)
Q Consensus 780 ~qGDa~dLp~~d----~sFD 795 (951)
+++|+.++++.. ..||
T Consensus 80 i~~D~~~~~~~~~~~~~~~~ 99 (255)
T 3tqs_A 80 YQNDALQFDFSSVKTDKPLR 99 (255)
T ss_dssp EESCTTTCCGGGSCCSSCEE
T ss_pred EEcchHhCCHHHhccCCCeE
Confidence 999999987643 4587
No 247
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.59 E-value=5.3e-08 Score=110.92 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.+++++.. .+..++.+.++
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r------------~g~~nv~v~~~ 163 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER------------WGVSNAIVTNH 163 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH------------HTCSSEEEECC
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEEeC
Confidence 455566677889999999999999998887532236899999999999999988753 23457999999
Q ss_pred cccccCC-CCCCccEEEEc------cccccCch--------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDS-RLHGFDIGTCL------EVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~-~d~sFDlVVci------eVLEHL~d--------------D~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++. ..+.||+|++. +++.+-++ .....+.+.+.++|||| .++.+|..
T Consensus 164 Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 164 APAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 9988752 35789999972 34433221 11124556799999998 77776653
No 248
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.59 E-value=1.4e-07 Score=104.93 Aligned_cols=136 Identities=21% Similarity=0.178 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCC-------------------------------------
Q 002222 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT------------------------------------- 735 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~------------------------------------- 735 (951)
..|+.+.....++......++.+|||+|||+|.++..++..+.
T Consensus 176 ~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 176 KAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 4477777777787777777788999999999999987765431
Q ss_pred CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEcccc-ccCc-hhHHHH
Q 002222 736 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHME-EDEASQ 813 (951)
Q Consensus 736 ~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVL-EHL~-dD~l~~ 813 (951)
...+|+|+|+++.+++.|++++... +...++++.++|+.+++.. ..||+|++.--. +.+. .+.+..
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~-----------gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ 323 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIA-----------GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQ 323 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHH
Confidence 1147999999999999999876532 1223799999999998764 589999996432 3343 233444
Q ss_pred HHHHHHHccCC--C-EEEEEecCCchhHHH
Q 002222 814 FGNIVLSSFRP--R-ILIVSTPNYEYNAIL 840 (951)
Q Consensus 814 L~eeL~RvLKP--G-vLIISTPNsEfN~lf 840 (951)
+.+.+.+.|++ | .+.+-|++.++...+
T Consensus 324 ly~~lg~~lk~~~g~~~~iit~~~~l~~~~ 353 (385)
T 3ldu_A 324 LYKELGYAFRKLKNWSYYLITSYEDFEYEF 353 (385)
T ss_dssp HHHHHHHHHHTSBSCEEEEEESCTTHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEEECCHHHHHhh
Confidence 55556666665 6 777778887765543
No 249
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.59 E-value=4.7e-08 Score=105.45 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeC----ChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc-ccc
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG-SIT 785 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDI----SeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG-Da~ 785 (951)
.++.+|||||||+|.++..+++.+ +|+|||+ ++.+++.+. .. ..+..++++.++ |+.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~--~~------------~~~~~~v~~~~~~D~~ 142 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIP--MS------------TYGWNLVRLQSGVDVF 142 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCC--CC------------STTGGGEEEECSCCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHH--hh------------hcCCCCeEEEeccccc
Confidence 356899999999999999999873 7999999 554442110 00 112357999999 888
Q ss_pred ccCCCCCCccEEEEccccc---cCchhHH-HHHHHHHHHccCCC-EEEEEecCC
Q 002222 786 VFDSRLHGFDIGTCLEVIE---HMEEDEA-SQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLE---HL~dD~l-~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+++ ...||+|+|..... +..+... ..+...+.++|||| .+++.++..
T Consensus 143 ~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 143 FIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp TSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 765 46899999976542 2222211 12345688999999 777766654
No 250
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.59 E-value=2.4e-07 Score=92.79 Aligned_cols=97 Identities=10% Similarity=0.154 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.. .+|+|||+++.. ...+++++++|+.+.+..
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~-----------------------~~~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEME-----------------------EIAGVRFIRCDIFKETIF 77 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCC-----------------------CCTTCEEEECCTTSSSHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccc-----------------------cCCCeEEEEccccCHHHH
Confidence 467899999999999999999985 799999998731 123789999999876521
Q ss_pred -----------CCCccEEEEccccccC----ch-----hHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 791 -----------LHGFDIGTCLEVIEHM----EE-----DEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 -----------d~sFDlVVcieVLEHL----~d-----D~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+.||+|+|....... .+ +....+.+.+.++|||| .+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 1489999996432111 10 11234445689999999 66655543
No 251
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.58 E-value=1.2e-07 Score=112.97 Aligned_cols=106 Identities=12% Similarity=0.074 Sum_probs=80.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC--ccEEEEEcccccc-C
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVF-D 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~--~nVtf~qGDa~dL-p 788 (951)
++++|||+|||+|.++..+++.+. .+|++||+|+.+++.|++++.. .+. .+++++++|+.+. +
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~------------ngl~~~~v~~i~~D~~~~l~ 604 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRL------------NGLTGRAHRLIQADCLAWLR 604 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCSTTEEEEESCHHHHHH
T ss_pred CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCccceEEEecCHHHHHH
Confidence 678999999999999999988763 5799999999999999988652 222 3799999999873 3
Q ss_pred CCCCCccEEEEcc-----------ccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 789 SRLHGFDIGTCLE-----------VIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 789 ~~d~sFDlVVcie-----------VLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.....||+|++.- +.++.. + ...+...+.++|+|| .+++++..
T Consensus 605 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~-~-~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 605 EANEQFDLIFIDPPTFSNSKRMEDAFDVQR-D-HLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HCCCCEEEEEECCCSBC-------CCBHHH-H-HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCCccEEEECCccccCCccchhHHHHHH-H-HHHHHHHHHHhcCCCcEEEEEECC
Confidence 3457899999842 222222 3 344555789999999 66666554
No 252
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.58 E-value=7.2e-08 Score=105.59 Aligned_cols=112 Identities=16% Similarity=0.280 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+++.+.+...++.+|||+|||+|.++..++++.....+++|+|+++.+++.| .+++++
T Consensus 28 ~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------------~~~~~~ 86 (421)
T 2ih2_A 28 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------------PWAEGI 86 (421)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------TTEEEE
T ss_pred HHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------CCCcEE
Confidence 34566666655567999999999999999987521226999999999988665 168899
Q ss_pred EccccccCCCCCCccEEEEc---ccc-------ccCchhHHH-----------------HHHHHHHHccCCC-EEEEEec
Q 002222 781 DGSITVFDSRLHGFDIGTCL---EVI-------EHMEEDEAS-----------------QFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVci---eVL-------EHL~dD~l~-----------------~L~eeL~RvLKPG-vLIISTP 832 (951)
++|+.+.+. ...||+|+++ ... .|+.++... .|.+.+.++|+|| .+++.+|
T Consensus 87 ~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 87 LADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp ESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 999987653 4689999995 111 124433321 5567789999998 7777788
Q ss_pred CC
Q 002222 833 NY 834 (951)
Q Consensus 833 Ns 834 (951)
+.
T Consensus 166 ~~ 167 (421)
T 2ih2_A 166 AT 167 (421)
T ss_dssp GG
T ss_pred hH
Confidence 64
No 253
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.57 E-value=3.4e-07 Score=102.19 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=73.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-CC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~~ 790 (951)
++++|||+|||+|.++..+++.+ ..|+|+|+|+.+++.|++++... +. ...+.++|+.+.. ..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~~n~~~n------------g~-~~~~~~~D~~~~l~~~ 277 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLDQAALRL------------GL-RVDIRHGEALPTLRGL 277 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH------------TC-CCEEEESCHHHHHHTC
T ss_pred CCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHh------------CC-CCcEEEccHHHHHHHh
Confidence 47899999999999999999987 45999999999999999876521 11 2346689987753 21
Q ss_pred CCCccEEEEcccccc--------CchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 791 LHGFDIGTCLEVIEH--------MEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEH--------L~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+.||+|++.--..+ .. .....+.+.+.++|+|| .+++.+.+
T Consensus 278 ~~~fD~Ii~dpP~f~~~~~~~~~~~-~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 278 EGPFHHVLLDPPTLVKRPEELPAMK-RHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCEEEEEECCCCCCSSGGGHHHHH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCEEEECCCcCCCCHHHHHHHH-HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 334999998532101 11 12234555689999999 55545443
No 254
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.54 E-value=7.5e-08 Score=105.70 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
.+.++++.+.+... +.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++.. .+..++
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~------------ng~~~v 263 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAA------------NHIDNV 263 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHH------------TTCCSE
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCce
Confidence 45566777766543 5789999999999999999865 6999999999999999887642 234589
Q ss_pred EEEEccccccCC--CC--------------CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002222 778 VLFDGSITVFDS--RL--------------HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 778 tf~qGDa~dLp~--~d--------------~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+++++|+.++.. .. ..||+|++.- +. ..+.+.+.+.|+++ .++..+-|
T Consensus 264 ~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dP-------Pr-~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 264 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP-------PR-SGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp EEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECC-------CT-TCCCHHHHHHHTTSSEEEEEESC
T ss_pred EEEECCHHHHHHHHhhccccccccccccccCCCCEEEECc-------Cc-cccHHHHHHHHhCCCEEEEEECC
Confidence 999999977521 11 3799998632 11 11112355555565 55555444
No 255
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.51 E-value=2e-07 Score=99.36 Aligned_cols=94 Identities=9% Similarity=0.064 Sum_probs=73.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
..+.+++.+...++ +|||||||+|.++..|++.+ .+|+|+|+|+.|++.+++++. ..++++
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~---------------~~~v~v 95 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS---------------GLPVRL 95 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT---------------TSSEEE
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC---------------CCCEEE
Confidence 34556677666677 99999999999999999987 799999999999999987642 147999
Q ss_pred EEccccccCCCCC-CccEEEEccccccCchhHHHH
Q 002222 780 FDGSITVFDSRLH-GFDIGTCLEVIEHMEEDEASQ 813 (951)
Q Consensus 780 ~qGDa~dLp~~d~-sFDlVVcieVLEHL~dD~l~~ 813 (951)
+++|+.++++... .+|.|+++- -.++..+.+..
T Consensus 96 i~~D~l~~~~~~~~~~~~iv~Nl-Py~iss~il~~ 129 (271)
T 3fut_A 96 VFQDALLYPWEEVPQGSLLVANL-PYHIATPLVTR 129 (271)
T ss_dssp EESCGGGSCGGGSCTTEEEEEEE-CSSCCHHHHHH
T ss_pred EECChhhCChhhccCccEEEecC-cccccHHHHHH
Confidence 9999999887543 688877754 34555344333
No 256
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.51 E-value=2.5e-07 Score=99.23 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=87.2
Q ss_pred hhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccccc
Q 002222 688 EQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 767 (951)
Q Consensus 688 e~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~ 767 (951)
...+|++.+..+|... .+.+ .++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.+++++...
T Consensus 104 ~k~~f~~~~~~er~ri-~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N------- 171 (278)
T 3k6r_A 104 AKIMFSPANVKERVRM-AKVA--KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLN------- 171 (278)
T ss_dssp TTSCCCGGGHHHHHHH-HHHC--CTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHT-------
T ss_pred cceEEcCCcHHHHHHH-HHhc--CCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHc-------
Confidence 3457888888888653 3433 3678999999999999999998874 68999999999999999876521
Q ss_pred CCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEE
Q 002222 768 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 827 (951)
Q Consensus 768 l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvL 827 (951)
+-..+++++++|+.++.. .+.||.|++..- + .. ..|...+.++||||++
T Consensus 172 ----~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p----~-~~-~~~l~~a~~~lk~gG~ 220 (278)
T 3k6r_A 172 ----KVEDRMSAYNMDNRDFPG-ENIADRILMGYV----V-RT-HEFIPKALSIAKDGAI 220 (278)
T ss_dssp ----TCTTTEEEECSCTTTCCC-CSCEEEEEECCC----S-SG-GGGHHHHHHHEEEEEE
T ss_pred ----CCCCcEEEEeCcHHHhcc-ccCCCEEEECCC----C-cH-HHHHHHHHHHcCCCCE
Confidence 123469999999988764 468999987532 1 11 1334457789999943
No 257
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.45 E-value=1.4e-07 Score=99.48 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=66.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCCh-------HHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ-------KSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISe-------emLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ .+++.|+++.... +.
T Consensus 73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~------------~~ 137 (258)
T 2r6z_A 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQ------------DT 137 (258)
T ss_dssp CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHH------------HH
T ss_pred HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhh------------CC
Confidence 445555554566899999999999999999986 6899999999 9999987654321 11
Q ss_pred -ccEEEEEcccccc-C-CCC--CCccEEEEcccccc
Q 002222 775 -KSAVLFDGSITVF-D-SRL--HGFDIGTCLEVIEH 805 (951)
Q Consensus 775 -~nVtf~qGDa~dL-p-~~d--~sFDlVVcieVLEH 805 (951)
.+++++++|+.++ + +.+ .+||+|++.-.+.|
T Consensus 138 ~~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 138 AARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HTTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred ccCeEEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 2599999999875 2 233 68999999765554
No 258
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.42 E-value=8.6e-07 Score=95.97 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=67.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||.|..+..+++......+|+|+|+++.+++.+++++.. .+..+++++++
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r------------~g~~~v~~~~~ 160 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR------------AGVSCCELAEE 160 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEEC
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 444556667788999999999999999887522236999999999999999988752 24457999999
Q ss_pred cccccCCCC---CCccEEEE
Q 002222 783 SITVFDSRL---HGFDIGTC 799 (951)
Q Consensus 783 Da~dLp~~d---~sFDlVVc 799 (951)
|+.+++... ..||.|++
T Consensus 161 D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 161 DFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CGGGSCTTCGGGTTEEEEEE
T ss_pred ChHhcCccccccCCCCEEEE
Confidence 998876532 57999996
No 259
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.40 E-value=9.2e-07 Score=92.73 Aligned_cols=90 Identities=14% Similarity=0.230 Sum_probs=67.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+.+.+...++.+|||||||+|.++..|++.+. .+|+|+|+|+.+++.++++ ...++++
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----------------~~~~v~~ 80 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----------------GDERLEV 80 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----------------CCTTEEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----------------cCCCeEE
Confidence 344566777777788999999999999999999842 7999999999999999653 1247999
Q ss_pred EEccccccCCCCCCccEEEEccccccCc
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~ 807 (951)
+++|+.++++.+..-+.++..+.-.++.
T Consensus 81 i~~D~~~~~~~~~~~~~~vv~NlPy~i~ 108 (249)
T 3ftd_A 81 INEDASKFPFCSLGKELKVVGNLPYNVA 108 (249)
T ss_dssp ECSCTTTCCGGGSCSSEEEEEECCTTTH
T ss_pred EEcchhhCChhHccCCcEEEEECchhcc
Confidence 9999999887542213444444445555
No 260
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.40 E-value=2e-07 Score=104.79 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=85.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCC------------CCceEEEEeCChHHHHHHHHHHHhhhhcccccC
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT------------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 768 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~------------~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l 768 (951)
.+++++.+....+.+|||.|||+|.++..++++.. ...+++|+|+++.+++.|+.++.-
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--------- 230 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--------- 230 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH---------
Confidence 34667777777778999999999999987775410 115799999999999999876531
Q ss_pred CCCCCCc--cEEEEEccccccCCCCCCccEEEEccccccCchh---------------HHHHHHHHHHHccCCC-EEEEE
Q 002222 769 VPCTDVK--SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED---------------EASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 769 ~Pr~~~~--nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD---------------~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.+.. ++.+.++|....+.. ..||+|+++--+.+.... ....|.+.+.+.|+|| .+++.
T Consensus 231 ---~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 231 ---HGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp ---TTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---hCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 1111 577899998876643 489999997544433211 1125667799999998 77777
Q ss_pred ecC
Q 002222 831 TPN 833 (951)
Q Consensus 831 TPN 833 (951)
+|+
T Consensus 307 ~p~ 309 (445)
T 2okc_A 307 LPD 309 (445)
T ss_dssp EEH
T ss_pred ECC
Confidence 775
No 261
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.39 E-value=3.6e-08 Score=101.71 Aligned_cols=81 Identities=11% Similarity=0.201 Sum_probs=65.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++. ...++++++
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--------------~~~~v~~~~ 81 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--------------LNTRVTLIH 81 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--------------TCSEEEECC
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--------------cCCceEEEE
Confidence 456666666677899999999999999999887 799999999999988865431 234899999
Q ss_pred ccccccCCCC-CCccEEEEc
Q 002222 782 GSITVFDSRL-HGFDIGTCL 800 (951)
Q Consensus 782 GDa~dLp~~d-~sFDlVVci 800 (951)
+|+.++++.. +.| .|+++
T Consensus 82 ~D~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 82 QDILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp SCCTTTTCCCSSEE-EEEEE
T ss_pred CChhhcCcccCCCc-EEEEe
Confidence 9999988763 578 56554
No 262
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.34 E-value=4.7e-07 Score=97.93 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+++.+...++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.|++.|++++.. .+ .+++++++
T Consensus 17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~------------~g-~~v~~v~~ 82 (301)
T 1m6y_A 17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE------------FS-DRVSLFKV 82 (301)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG------------GT-TTEEEEEC
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh------------cC-CcEEEEEC
Confidence 455666666788999999999999999998752 37999999999999999987642 12 48999999
Q ss_pred cccccCC--C---CCCccEEEEc
Q 002222 783 SITVFDS--R---LHGFDIGTCL 800 (951)
Q Consensus 783 Da~dLp~--~---d~sFDlVVci 800 (951)
|+.+++. . ...||.|++.
T Consensus 83 d~~~l~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 83 SYREADFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEc
Confidence 9988752 1 1579999873
No 263
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.29 E-value=1.4e-06 Score=93.07 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~-~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
.+.+++.+...++.+|||||||+|.++..|++.+.. ..+|+|||+|+.|++.++++. ..++++
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----------------~~~v~~ 94 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----------------GELLEL 94 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----------------GGGEEE
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----------------CCCcEE
Confidence 345667777778889999999999999999987621 123999999999999998762 137999
Q ss_pred EEccccccCCC
Q 002222 780 FDGSITVFDSR 790 (951)
Q Consensus 780 ~qGDa~dLp~~ 790 (951)
+++|+.++++.
T Consensus 95 i~~D~~~~~~~ 105 (279)
T 3uzu_A 95 HAGDALTFDFG 105 (279)
T ss_dssp EESCGGGCCGG
T ss_pred EECChhcCChh
Confidence 99999998764
No 264
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.28 E-value=1e-06 Score=97.86 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=82.9
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccC
Q 002222 689 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 768 (951)
Q Consensus 689 ~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l 768 (951)
...|+.|-...-.+.....+...++.+|||+|||+|.++..+++..+ ..+|+++|+++++++.+++++....... .
T Consensus 24 ~~~F~np~~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~---~ 99 (378)
T 2dul_A 24 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGE---L 99 (378)
T ss_dssp -CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSC---C
T ss_pred CCceeCCchHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccc---c
Confidence 34566554443333322233333778999999999999999888631 2579999999999999998875320000 0
Q ss_pred CCCC------CCccEEEEEccccccCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002222 769 VPCT------DVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 769 ~Pr~------~~~nVtf~qGDa~dLp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.+.. +..+++++++|+.++... ...||+|++-- .. . ...+.+.+.+.|+|| .++++
T Consensus 100 ~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 100 RESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccCCCceEEEcCcHHHHHHhccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEE
Confidence 0000 233599999999775422 35799998532 11 1 124455688899998 44444
No 265
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.24 E-value=2e-06 Score=92.69 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=64.9
Q ss_pred cCCCCEEEEEcC------ccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE-EEc
Q 002222 710 ESCATTLVDFGC------GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL-FDG 782 (951)
Q Consensus 710 ~~k~krVLDIGC------GeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf-~qG 782 (951)
..++.+|||+|| |+|. ..+++..++..+|+|+|+|+. +. ++++ +++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~-----------------~v~~~i~g 113 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS-----------------DADSTLIG 113 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC-----------------SSSEEEES
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC-----------------CCEEEEEC
Confidence 456789999999 4466 333433222379999999987 11 4677 999
Q ss_pred cccccCCCCCCccEEEEccccc--------cCc-hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 783 SITVFDSRLHGFDIGTCLEVIE--------HME-EDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLE--------HL~-dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
|+.++++. ..||+|++....+ |.. .+....+.+++.++|||| .+++.++..
T Consensus 114 D~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 114 DCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp CGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99987754 6899999964322 111 122234556799999999 666656543
No 266
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.19 E-value=3.9e-06 Score=100.14 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCC-------------------------------------
Q 002222 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYP------------------------------------- 734 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g------------------------------------- 734 (951)
..-|+.+.-...++.+....++.+|||.+||+|.++..++..+
T Consensus 170 ~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~ 249 (703)
T 3v97_A 170 GIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRAR 249 (703)
T ss_dssp CCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence 3446777666677777776778899999999999997766431
Q ss_pred ----CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC--CCCccEEEEcccc-ccCc
Q 002222 735 ----TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLEVI-EHME 807 (951)
Q Consensus 735 ----~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~--d~sFDlVVcieVL-EHL~ 807 (951)
.....++|+|+++.+++.|++++... +....+++.++|+.++..+ .+.||+|+++==. +.+.
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~a-----------gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg 318 (703)
T 3v97_A 250 KGLAEYSSHFYGSDSDARVIQRARTNARLA-----------GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLD 318 (703)
T ss_dssp HHHHHCCCCEEEEESCHHHHHHHHHHHHHT-----------TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---
T ss_pred hccccCCccEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChhhCccccccCCCCEEEeCCCcccccc
Confidence 01147999999999999999876531 1223599999999987443 3489999997211 1222
Q ss_pred -hhHHHHHHHH---HHHccCCC-EEEEEecCCchhH
Q 002222 808 -EDEASQFGNI---VLSSFRPR-ILIVSTPNYEYNA 838 (951)
Q Consensus 808 -dD~l~~L~ee---L~RvLKPG-vLIISTPNsEfN~ 838 (951)
.+.+..+.+. +.+.+.|| .+.+-|++.++..
T Consensus 319 ~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~~l~~ 354 (703)
T 3v97_A 319 SEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLS 354 (703)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCCCCeEEEEeCCHHHHH
Confidence 1222333333 34444577 7777788866543
No 267
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.15 E-value=2.2e-06 Score=90.17 Aligned_cols=87 Identities=8% Similarity=0.054 Sum_probs=63.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCce--EEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~q--VVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.+.+.+.+...++.+|||||||+|.++. +.+ + .+ |+|+|+++.|++.+++++. ...+++
T Consensus 10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~---~~~~v~avEid~~~~~~a~~~~~--------------~~~~v~ 70 (252)
T 1qyr_A 10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E---RLDQLTVIELDRDLAARLQTHPF--------------LGPKLT 70 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T---TCSCEEEECCCHHHHHHHHTCTT--------------TGGGEE
T ss_pred HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C---CCCeEEEEECCHHHHHHHHHHhc--------------cCCceE
Confidence 3456666666677899999999999999 764 4 35 9999999999999976532 124899
Q ss_pred EEEccccccCCCCC-----CccEEEEccccccCc
Q 002222 779 LFDGSITVFDSRLH-----GFDIGTCLEVIEHME 807 (951)
Q Consensus 779 f~qGDa~dLp~~d~-----sFDlVVcieVLEHL~ 807 (951)
++++|+.++++... ..|.|+++ .-.++.
T Consensus 71 ~i~~D~~~~~~~~~~~~~~~~~~vvsN-lPY~i~ 103 (252)
T 1qyr_A 71 IYQQDAMTFNFGELAEKMGQPLRVFGN-LPYNIS 103 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEE-CCTTTH
T ss_pred EEECchhhCCHHHhhcccCCceEEEEC-CCCCcc
Confidence 99999998875421 23455554 333454
No 268
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.07 E-value=7e-06 Score=91.33 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=73.9
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-- 789 (951)
.+++|||||||+|.+++.+++++. .+|++||+++.+++.|++.+....... ...| ...+++++.+|+.++-.
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~--l~dp--~~~rv~vi~~Da~~~L~~~ 261 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDV--LDNL--KGDCYQVLIEDCIPVLKRY 261 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----C--CSSS--EETTEEEEESCHHHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhcccc--cccc--CCCcEEEEECcHHHHHHhh
Confidence 578999999999999999999873 799999999999999998753110000 0000 01379999999987543
Q ss_pred --CCCCccEEEEcccc-------ccCchhHHHHHHHHH----HHccCCCEEEE
Q 002222 790 --RLHGFDIGTCLEVI-------EHMEEDEASQFGNIV----LSSFRPRILIV 829 (951)
Q Consensus 790 --~d~sFDlVVcieVL-------EHL~dD~l~~L~eeL----~RvLKPGvLII 829 (951)
....||+|++--.- .++. -..|.+.+ .++|+||++++
T Consensus 262 ~~~~~~fDvII~D~~d~P~~~~p~~L~---t~eFy~~~~~~~~~~L~pgGilv 311 (364)
T 2qfm_A 262 AKEGREFDYVINDLTAVPISTSPEEDS---TWEFLRLILDLSMKVLKQDGKYF 311 (364)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----C---HHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hccCCCceEEEECCCCcccCcCchhhh---HHHHHHHHHHHHHhhCCCCcEEE
Confidence 35789999985321 1111 12333445 89999994444
No 269
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.07 E-value=2.7e-06 Score=95.85 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=61.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC-
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS- 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~- 789 (951)
.+.+|||+|||+|..+..|++.+ .+|+|||+|+.+++.|++++.... .+..+++++++|+.+. +.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~----------~gl~~i~~i~~Da~~~L~~~ 159 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLL----------NEGKDVNILTGDFKEYLPLI 159 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHS----------CTTCEEEEEESCGGGSHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhc----------cCCCcEEEEECcHHHhhhhc
Confidence 37899999999999999999887 799999999999999998865310 0235899999999874 32
Q ss_pred CCCCccEEEE
Q 002222 790 RLHGFDIGTC 799 (951)
Q Consensus 790 ~d~sFDlVVc 799 (951)
....||+|++
T Consensus 160 ~~~~fDvV~l 169 (410)
T 3ll7_A 160 KTFHPDYIYV 169 (410)
T ss_dssp HHHCCSEEEE
T ss_pred cCCCceEEEE
Confidence 2358999998
No 270
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.97 E-value=1.1e-05 Score=93.57 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCC-----------------CceEEEEeCChHHHHHHHHHHHhhhhcc
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-----------------LEKIVGVDISQKSLSRAAKIIHSKLSKK 764 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~-----------------~~qVVGVDISeemLe~ArkrLsa~ls~~ 764 (951)
+++++.+....+.+|||.|||+|.++..++++... ...++|+|+++.++..|+.++.-
T Consensus 159 ~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l----- 233 (541)
T 2ar0_A 159 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL----- 233 (541)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-----
T ss_pred HHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH-----
Confidence 45667777777789999999999999776643100 13799999999999999876531
Q ss_pred cccCCCCCCCc-----cEEEEEccccccC-CCCCCccEEEEccccccCc------------hhHHHHHHHHHHHccCCC-
Q 002222 765 LDAAVPCTDVK-----SAVLFDGSITVFD-SRLHGFDIGTCLEVIEHME------------EDEASQFGNIVLSSFRPR- 825 (951)
Q Consensus 765 ~~~l~Pr~~~~-----nVtf~qGDa~dLp-~~d~sFDlVVcieVLEHL~------------dD~l~~L~eeL~RvLKPG- 825 (951)
.+.. ++.+.++|....+ .....||+|+++--+.... .+....|...+.+.|+||
T Consensus 234 -------~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 234 -------HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp -------TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred -------hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 1222 2678899987654 3456899999963222111 111235667799999998
Q ss_pred EEEEEecC
Q 002222 826 ILIVSTPN 833 (951)
Q Consensus 826 vLIISTPN 833 (951)
.+.+.+|+
T Consensus 307 r~a~V~p~ 314 (541)
T 2ar0_A 307 RAAVVVPD 314 (541)
T ss_dssp EEEEEEEH
T ss_pred EEEEEecC
Confidence 77777776
No 271
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.94 E-value=2e-05 Score=88.26 Aligned_cols=104 Identities=17% Similarity=0.072 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc-c-EEEEEccccccC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-S-AVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~-n-Vtf~qGDa~dLp 788 (951)
.++.+|||++||+|.++..+++......+|+++|+++.+++.+++++.. .+.. + ++++++|+.++.
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~------------Ngl~~~~v~v~~~Da~~~l 118 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL------------NNIPEDRYEIHGMEANFFL 118 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH------------TTCCGGGEEEECSCHHHHH
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------hCCCCceEEEEeCCHHHHH
Confidence 4578999999999999998887431126899999999999999988752 2333 3 999999997643
Q ss_pred C--CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 789 S--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 789 ~--~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
. ....||+|++-- .... ..+.+.+.+.|+||.++..+-
T Consensus 119 ~~~~~~~fD~V~lDP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 119 RKEWGFGFDYVDLDP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp HSCCSSCEEEEEECC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCCCcEEEECC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 2 245799998754 1111 234556888899994444433
No 272
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.84 E-value=2.4e-05 Score=82.98 Aligned_cols=96 Identities=9% Similarity=-0.034 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCC--CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC-C-ccE
Q 002222 702 EYALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD-V-KSA 777 (951)
Q Consensus 702 e~VldlL~~~k~--krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~-~-~nV 777 (951)
+.+.+.+...++ .+|||+|||.|..+..++..+ .+|+|||+++.+...+++.+....... ..++ . .++
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~-----~~~~~l~~~i 147 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADA-----EIGGWLQERL 147 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCT-----TTHHHHHHHE
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhH-----hhhhhhhcCE
Confidence 456666655566 899999999999999999887 689999999988777665543211000 0011 1 479
Q ss_pred EEEEcccccc-CCCCCCccEEEEcccccc
Q 002222 778 VLFDGSITVF-DSRLHGFDIGTCLEVIEH 805 (951)
Q Consensus 778 tf~qGDa~dL-p~~d~sFDlVVcieVLEH 805 (951)
+++++|+.++ +.....||+|++.-...+
T Consensus 148 ~~~~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 148 QLIHASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp EEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred EEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 9999999874 322246999998766655
No 273
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.76 E-value=0.00015 Score=84.39 Aligned_cols=122 Identities=15% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHhh----cCCCCEEEEEcCccchhHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002222 702 EYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 702 e~VldlL~----~~k~krVLDIGCGeG~ll~~LAk~g~--~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
+++++++. +..+.+|+|.+||+|.++..++++.. ....++|+|+++.++..|+.++.- .+ ....
T Consensus 207 ~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l--~g--------i~~~ 276 (542)
T 3lkd_A 207 KLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL--HG--------VPIE 276 (542)
T ss_dssp HHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH--TT--------CCGG
T ss_pred HHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH--cC--------CCcC
Confidence 45556655 45678999999999999877765420 136899999999999999876531 10 1114
Q ss_pred cEEEEEcccccc--C-CCCCCccEEEEc--ccccc-----------------Cc---hhHHHHHHHHHHHccC-CC-EEE
Q 002222 776 SAVLFDGSITVF--D-SRLHGFDIGTCL--EVIEH-----------------ME---EDEASQFGNIVLSSFR-PR-ILI 828 (951)
Q Consensus 776 nVtf~qGDa~dL--p-~~d~sFDlVVci--eVLEH-----------------L~---dD~l~~L~eeL~RvLK-PG-vLI 828 (951)
++.+.++|.... + .....||+|+++ +...+ ++ .... .|...+.+.|+ || .+.
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~-~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADF-AFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHH-HHHHHHHHTBCTTTCEEE
T ss_pred ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhH-HHHHHHHHHhCCCceeEE
Confidence 688999998766 3 346789999985 11110 11 0112 46677999999 87 777
Q ss_pred EEecCC
Q 002222 829 VSTPNY 834 (951)
Q Consensus 829 ISTPNs 834 (951)
+.+|+.
T Consensus 356 ~VlP~g 361 (542)
T 3lkd_A 356 IVLPHG 361 (542)
T ss_dssp EEEETH
T ss_pred EEecch
Confidence 777863
No 274
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.74 E-value=2.6e-05 Score=93.07 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=68.9
Q ss_pred CCEEEEEcCccchhHHHHhcCC---C---------CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYP---T---------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g---~---------~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.|||||||+|-+....++.+ + ...+|++||.++.++...+.+... +...+|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N------------g~~d~VtVI 477 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR------------TWKRRVTII 477 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH------------TTTTCSEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc------------CCCCeEEEE
Confidence 4689999999999964321111 0 114999999999777665544321 123469999
Q ss_pred EccccccCCC-----CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 781 DGSITVFDSR-----LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 781 qGDa~dLp~~-----d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
+++++++..+ ...+|+||+-..=..+..+........+.++||||+++|
T Consensus 478 ~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 478 ESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp ESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred eCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 9999998753 578999998544333332322333445678999985544
No 275
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.72 E-value=0.00019 Score=77.88 Aligned_cols=109 Identities=18% Similarity=0.133 Sum_probs=80.1
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
...+++||-||-|.|..++.++++. +..+|+.|||+++.++.|++.+...... ....++++++.+|+..+-
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~-------~~~dpRv~v~~~Dg~~~l~ 152 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAG-------SYDDPRFKLVIDDGVNFVN 152 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTT-------GGGCTTEEEEESCTTTTTS
T ss_pred CCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCcccccc-------ccCCCcEEEEechHHHHHh
Confidence 3467899999999999999999986 5689999999999999998865422111 123468999999998753
Q ss_pred CCCCCccEEEEcc-----ccccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 789 SRLHGFDIGTCLE-----VIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 789 ~~d~sFDlVVcie-----VLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
...+.||+|+.-- .-+++.. ..|.+.+.+.|+||++++
T Consensus 153 ~~~~~yDvIi~D~~dp~~~~~~L~t---~eFy~~~~~~L~p~Gv~v 195 (294)
T 3o4f_A 153 QTSQTFDVIISDCTDPIGPGESLFT---SAFYEGCKRCLNPGGIFV 195 (294)
T ss_dssp CSSCCEEEEEESCCCCCCTTCCSSC---CHHHHHHHHTEEEEEEEE
T ss_pred hccccCCEEEEeCCCcCCCchhhcC---HHHHHHHHHHhCCCCEEE
Confidence 3457899998632 1223321 245567999999995544
No 276
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.71 E-value=4.2e-05 Score=90.54 Aligned_cols=105 Identities=9% Similarity=0.038 Sum_probs=67.0
Q ss_pred CCCEEEEEcCccchhHHHH---hcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGSLLDSL---LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~L---Ak~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
+...|||||||+|-+.... ++.++...+|++||-|+ +...|++..... +...+|++++||+++..
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-----------~~~dkVtVI~gd~eev~ 424 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE-----------EWGSQVTVVSSDMREWV 424 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-----------TTGGGEEEEESCTTTCC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-----------cCCCeEEEEeCcceecc
Confidence 3457999999999994333 33332224799999997 455566554321 23458999999999987
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
.+ .++|+||+=.+=..+..+-+........++||||+++|
T Consensus 425 LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 425 AP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 65 68999998322111111111223344679999996655
No 277
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.58 E-value=0.00043 Score=83.89 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=75.5
Q ss_pred CCCEEEEEcCccchhHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~--~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
.+.+|||.|||+|.++..+++..+ ...+++|+|+++.+++.|+.++....... ..+.....+..+|+...+
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L------lhGi~~~~I~~dD~L~~~~ 394 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL------VSSNNAPTITGEDVCSLNP 394 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT------CBTTBCCEEECCCGGGCCG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh------hcCCCcceEEecchhcccc
Confidence 567999999999999998887652 12579999999999999954433111000 112223455666666532
Q ss_pred CCCCCccEEEEcc--ccc-cCch------------------------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 789 SRLHGFDIGTCLE--VIE-HMEE------------------------DEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 789 ~~d~sFDlVVcie--VLE-HL~d------------------------D~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.....||+|+++= ... ..+. +....|.+.+.+.|+|| .+.+.+|+.
T Consensus 395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 2356899999952 111 1110 11234667788999998 788888874
No 278
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.56 E-value=0.00091 Score=68.86 Aligned_cols=97 Identities=8% Similarity=0.001 Sum_probs=68.9
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC--CccEEEEEcccccc--
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD--VKSAVLFDGSITVF-- 787 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~--~~nVtf~qGDa~dL-- 787 (951)
+.++|||+||| +.+..|++.. ..+|+.||.+++..+.|++.+... +. ..+|+++.|++.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~-----------g~~~~~~I~~~~gda~~~~~ 94 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELP--GKHVTSVESDRAWARMMKAWLAAN-----------PPAEGTEVNIVWTDIGPTGD 94 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHS-----------CCCTTCEEEEEECCCSSBCG
T ss_pred CCCEEEEECch--HHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCCceEEEEeCchhhhc
Confidence 67899999985 6777788752 279999999999999999887631 11 45899999997542
Q ss_pred -------------C--------C-CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002222 788 -------------D--------S-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 788 -------------p--------~-~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
+ . ..+.||+|+.-.- .....+ ..+.+.|+||++|+.
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~-~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR------FRVGCA-LATAFSITRPVTLLF 152 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS------SHHHHH-HHHHHHCSSCEEEEE
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC------CchhHH-HHHHHhcCCCeEEEE
Confidence 1 1 1367999987653 111233 346789999955543
No 279
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.53 E-value=0.0001 Score=85.71 Aligned_cols=120 Identities=11% Similarity=-0.034 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCC--------------CCceEEEEeCChHHHHHHHHHHHhhhhccccc
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT--------------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 767 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~--------------~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~ 767 (951)
+++++++....+ +|||.+||+|.++..++++.. ....++|+|+++.++..|+.++.- .
T Consensus 235 ~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l--~----- 306 (544)
T 3khk_A 235 TLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI--R----- 306 (544)
T ss_dssp HHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH--T-----
T ss_pred HHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH--h-----
Confidence 466666665444 999999999999877653210 015799999999999999876531 1
Q ss_pred CCCCCCCccEEEEEccccccC-CCCCCccEEEEc--cccc-c----------------------Cch---hHHHHHHHHH
Q 002222 768 AVPCTDVKSAVLFDGSITVFD-SRLHGFDIGTCL--EVIE-H----------------------MEE---DEASQFGNIV 818 (951)
Q Consensus 768 l~Pr~~~~nVtf~qGDa~dLp-~~d~sFDlVVci--eVLE-H----------------------L~d---D~l~~L~eeL 818 (951)
+...++.+.++|....+ .....||+|+++ +... + +++ ... .|.+.+
T Consensus 307 ----gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~-~Fl~~~ 381 (544)
T 3khk_A 307 ----GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF-AWMLHM 381 (544)
T ss_dssp ----TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH-HHHHHH
T ss_pred ----CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH-HHHHHH
Confidence 11123444778876554 345789999995 1111 0 111 112 466779
Q ss_pred HHccCCC-EEEEEecCC
Q 002222 819 LSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 819 ~RvLKPG-vLIISTPNs 834 (951)
.+.|+|| .+.+.+|+.
T Consensus 382 l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 382 LYHLAPTGSMALLLANG 398 (544)
T ss_dssp HHTEEEEEEEEEEEETH
T ss_pred HHHhccCceEEEEecch
Confidence 9999998 777778873
No 280
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=97.47 E-value=0.00012 Score=78.74 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002222 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
|..-.-..+..+.+.....++.+|||||||.|.++..+++.. +...++|+|++.++..... . .. ..
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi------~------~~-~~ 120 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPM------N------VQ-SL 120 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCC------C------CC-BT
T ss_pred ccccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccc------c------cC-cC
Confidence 333344344445444333466799999999999999887763 2367899999865310000 0 00 00
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEccccc----cCchhHHHHHHHHHHHccCCC-E-EEEEecC
Q 002222 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIE----HMEEDEASQFGNIVLSSFRPR-I-LIVSTPN 833 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLE----HL~dD~l~~L~eeL~RvLKPG-v-LIISTPN 833 (951)
+ .++..+++++....+....||+|+|-...+ .++......+.+.+.++|+|| . +++-+-.
T Consensus 121 g-~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 121 G-WNIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp T-GGGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C-CCeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 1 145556777655666678899999976544 122111112356678999998 4 4444433
No 281
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.43 E-value=0.00019 Score=77.51 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=63.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+++.+...++..+||.+||.|..+..|++.. .+|+|+|.++.+++.|++ +. . .+++++++
T Consensus 13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~-L~-------------~--~rv~lv~~ 73 (285)
T 1wg8_A 13 EALDLLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKG-LH-------------L--PGLTVVQG 73 (285)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHH-TC-------------C--TTEEEEES
T ss_pred HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHh-hc-------------c--CCEEEEEC
Confidence 45566666778899999999999999999984 799999999999999987 53 1 48999999
Q ss_pred cccccCC-----CCCCccEEEE
Q 002222 783 SITVFDS-----RLHGFDIGTC 799 (951)
Q Consensus 783 Da~dLp~-----~d~sFDlVVc 799 (951)
+..+++. ...+||.|++
T Consensus 74 ~f~~l~~~L~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 74 NFRHLKRHLAALGVERVDGILA 95 (285)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEE
T ss_pred CcchHHHHHHHcCCCCcCEEEe
Confidence 9988753 1246888876
No 282
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=97.38 E-value=0.0004 Score=59.80 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=49.9
Q ss_pred CCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 14 MKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 14 ~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
+.-+||.++++- ...-.|++.+.. | |...| .|.|.+.+.+.. .+|.-+-||+|||.||+.||++|.
T Consensus 2 ~~knp~s~L~E~-~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~ 67 (71)
T 2b7v_A 2 SGKNPVMILNEL-RPGLKYDFLSES-----G------ESHAK-SFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp CSSCHHHHHHHH-CCSCEEEEEECC-----C------CTTTC-CEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh-CCCCEEEEEEeE-----C------CCCCc-eEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHH
Confidence 456899999886 455678764321 1 22233 899999998864 489999999999999999999873
No 283
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=97.35 E-value=0.0005 Score=60.20 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=52.4
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002222 13 KMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
++.-+|...++|+- ..-.|++.+... |...| .|.|.+.+.+... +|.-+-||.|||.||+.||++|
T Consensus 4 ~~~K~pl~~L~q~~-~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L 69 (75)
T 3p1x_A 4 KHGKNPVMELNEKR-RGLKYELISETG-----------GSHDK-RFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKL 69 (75)
T ss_dssp --CCCHHHHHHHHS-TTCCEEEEEEES-----------CTTSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcC-CCCEEEEEEeeC-----------CCCCc-eEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHH
Confidence 56678999999985 567887754321 23344 8899888887655 8999999999999999999999
Q ss_pred CCC
Q 002222 93 GID 95 (951)
Q Consensus 93 g~~ 95 (951)
+-+
T Consensus 70 ~~~ 72 (75)
T 3p1x_A 70 FPD 72 (75)
T ss_dssp CTT
T ss_pred Hcc
Confidence 753
No 284
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.29 E-value=0.00038 Score=73.63 Aligned_cols=119 Identities=11% Similarity=-0.028 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcC-------CCC----CceEEEEeCCh---HHHHHH-----------HHHHHhhhh---
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDY-------PTA----LEKIVGVDISQ---KSLSRA-----------AKIIHSKLS--- 762 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~-------g~~----~~qVVGVDISe---emLe~A-----------rkrLsa~ls--- 762 (951)
.+..+|||+|+|+|..+..+++. .+. ..+++++|..+ +++..| ++.+.....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 34579999999999998776542 211 25899999766 666644 333221000
Q ss_pred cccccCCCCCCCccEEEEEccccc-cCCCC----CCccEEEEcc-ccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002222 763 KKLDAAVPCTDVKSAVLFDGSITV-FDSRL----HGFDIGTCLE-VIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 763 ~~~~~l~Pr~~~~nVtf~qGDa~d-Lp~~d----~sFDlVVcie-VLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
+.... .-..+..+++++.||+.+ ++... ..||+|+.-. .-...++---..+.+.+.+.|+||.++++
T Consensus 139 g~~r~-~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRL-LLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEE-EEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhhe-eccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 00000 001123578999999987 34322 2799998843 22222210013445679999999965553
No 285
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=97.24 E-value=0.00065 Score=62.44 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=57.1
Q ss_pred cccccccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHH
Q 002222 7 SVVAVRKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQS 83 (951)
Q Consensus 7 ~~~~~~~~~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~ 83 (951)
+.+|...+...||-.++ |+.|..-.|++.+.. | |.--| .|.|.+.+.+..+.+|.=+-||+|||.
T Consensus 5 ~~~m~~~~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~-----G------p~H~~-~F~v~v~i~g~~~~~G~G~SKK~Aeq~ 72 (97)
T 1x49_A 5 SSGMASDTPGFYMDKLNKYRQMHGVAITYKELSTS-----G------PPHDR-RFTFQVLIDEKEFPEAKGRSKQEARNA 72 (97)
T ss_dssp CCSSSCCCTTHHHHHHHHHHHHHTCCEEEEEEEEE-----S------CSSSC-EEEEEEEESSCCCCCEEESSHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHcCCCCeEEEEEee-----C------CCCCC-cEEEEEEECCEEEEEEeeCCHHHHHHH
Confidence 45677667778998875 455555688764321 1 22233 899999998866667888999999999
Q ss_pred HHHHHHHHcCCCC
Q 002222 84 AAEKALEKLGIDP 96 (951)
Q Consensus 84 aa~~al~klg~~~ 96 (951)
||+.||++|+-..
T Consensus 73 AA~~AL~~L~~~~ 85 (97)
T 1x49_A 73 AAKLAVDILDNEN 85 (97)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998543
No 286
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.23 E-value=0.00066 Score=75.86 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+||+.|.++..+++++ .+|+|||+.+ ++. .+. ..++|+++++|+......
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~--l~~---~l~--------------~~~~V~~~~~d~~~~~~~ 267 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGP--MAQ---SLM--------------DTGQVTWLREDGFKFRPT 267 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSC--CCH---HHH--------------TTTCEEEECSCTTTCCCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhh--cCh---hhc--------------cCCCeEEEeCccccccCC
Confidence 478999999999999999999998 7999999864 111 111 224899999999988877
Q ss_pred CCCccEEEEcccc
Q 002222 791 LHGFDIGTCLEVI 803 (951)
Q Consensus 791 d~sFDlVVcieVL 803 (951)
...||+|+|-.+.
T Consensus 268 ~~~~D~vvsDm~~ 280 (375)
T 4auk_A 268 RSNISWMVCDMVE 280 (375)
T ss_dssp SSCEEEEEECCSS
T ss_pred CCCcCEEEEcCCC
Confidence 7889999997664
No 287
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.09 E-value=0.00032 Score=75.66 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
.+..+.+.....++.+|||||||.|.++..+++.. +...|+|+|++..+...+... . ..+ .++..
T Consensus 78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~------------~~g-~~ii~ 142 (282)
T 3gcz_A 78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-T------------TLG-WNLIR 142 (282)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-C------------BTT-GGGEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-c------------cCC-CceEE
Confidence 34444443333466799999999999999888654 346799999987642222100 0 011 13333
Q ss_pred EEccccccCCCCCCccEEEEccccc----cCchhHHHHHHHHHHHccCCC---EEEEEecC
Q 002222 780 FDGSITVFDSRLHGFDIGTCLEVIE----HMEEDEASQFGNIVLSSFRPR---ILIVSTPN 833 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLE----HL~dD~l~~L~eeL~RvLKPG---vLIISTPN 833 (951)
...++....+....+|+|+|-.... .++......+.+.+.++|+|| .+++-+-.
T Consensus 143 ~~~~~dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 143 FKDKTDVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp EECSCCGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred eeCCcchhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 4433333444567899999976654 122111112355567899987 44444433
No 288
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=97.06 E-value=0.001 Score=60.10 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred ccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002222 12 RKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (951)
Q Consensus 12 ~~~~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (951)
..+.-+||-.++ |+.|..-.|++.+... |.-.| .|.|.+.+.+. +.+|.-+-||+|||.||+.|
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~a 76 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGKTPVYDLLKAEG-----------QAHQP-NFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVA 76 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCCEEEEEEEC----------------C-CEEEEEEETTE-EEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhcCCCCEEEEEEeEC-----------CCCCC-cEEEEEEECCE-EEEEEeCCHHHHHHHHHHHH
Confidence 456678998875 5667677897642211 22223 68888888775 56799999999999999999
Q ss_pred HHHcCC
Q 002222 89 LEKLGI 94 (951)
Q Consensus 89 l~klg~ 94 (951)
|++|+-
T Consensus 77 L~~L~~ 82 (90)
T 3llh_A 77 LKHLKG 82 (90)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 999974
No 289
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=97.05 E-value=0.00083 Score=58.56 Aligned_cols=69 Identities=23% Similarity=0.179 Sum_probs=49.5
Q ss_pred ccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002222 12 RKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (951)
Q Consensus 12 ~~~~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (951)
..+...||-.++ |+-|-.-.|++.+. .| |...| .|.|.+.+.+ .+-+|.=+-||+|||.||+.|
T Consensus 3 ~~~~~d~ks~LqE~~q~~~~~p~Y~~~~~-----~G------p~h~~-~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~a 69 (76)
T 1ekz_A 3 EGDKKSPISQVHEIGIKRNMTVHFKVLRE-----EG------PAHMK-NFITACIVGS-IVTEGEGNGKKVSKKRAAEKM 69 (76)
T ss_dssp CCCCSCHHHHHHHHHHHTTCCCEEEESSS-----CC------SSSCS-CSSEEEEETT-EEEEECCCSTTSSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCCEEEEEEe-----EC------CCCCC-cEEEEEEECC-EEEEEeeCCHHHHHHHHHHHH
Confidence 345568888875 44454467876321 11 22233 6888888888 666699999999999999999
Q ss_pred HHHcC
Q 002222 89 LEKLG 93 (951)
Q Consensus 89 l~klg 93 (951)
|++|+
T Consensus 70 L~~L~ 74 (76)
T 1ekz_A 70 LVELQ 74 (76)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99986
No 290
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=97.01 E-value=0.0022 Score=58.49 Aligned_cols=68 Identities=19% Similarity=0.086 Sum_probs=52.5
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002222 13 KMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
...-+|.--+.|+-+ .-.|++.+... |.--| .|.|.+.+.+... +|.=+-||+|||.||+.||++|
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~G-----------p~H~~-~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L 79 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETG-----------GSHDK-RFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKL 79 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEE-----------CSSCE-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeC-----------CCCCC-eEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHH
Confidence 344577778888888 77898754321 22233 8999999998654 8999999999999999999999
Q ss_pred CC
Q 002222 93 GI 94 (951)
Q Consensus 93 g~ 94 (951)
+-
T Consensus 80 ~~ 81 (91)
T 2l33_A 80 FP 81 (91)
T ss_dssp CC
T ss_pred hh
Confidence 74
No 291
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=96.99 E-value=0.0017 Score=72.56 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=75.2
Q ss_pred CCEEEEEcCccchhHHHHh--------cC------CCCCceEEEEeCChHHHHHHHHHHHhhhhccc--ccCC-CCCCCc
Q 002222 713 ATTLVDFGCGSGSLLDSLL--------DY------PTALEKIVGVDISQKSLSRAAKIIHSKLSKKL--DAAV-PCTDVK 775 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LA--------k~------g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~--~~l~-Pr~~~~ 775 (951)
..+|+|+|||+|..+..+. +. ..+..+|+.-|+-...-..--+.+........ .+.. ...+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4789999999999987662 11 12447899999877655444333322110000 0000 000111
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCchh------------------------------------HHHHHHHHHH
Q 002222 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED------------------------------------EASQFGNIVL 819 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD------------------------------------~l~~L~eeL~ 819 (951)
-+.-+-|+.-...++.++||+|+++.+|||+... +...|++...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333455655566788999999999999999721 3345677789
Q ss_pred HccCCC-EEEEEecCC
Q 002222 820 SSFRPR-ILIVSTPNY 834 (951)
Q Consensus 820 RvLKPG-vLIISTPNs 834 (951)
+.|+|| .+++++...
T Consensus 213 ~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHEEEEEEEEEEEEEC
T ss_pred HHhCCCCEEEEEEecC
Confidence 999999 777776643
No 292
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.88 E-value=0.0023 Score=57.16 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHH
Q 002222 15 KLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEK 91 (951)
Q Consensus 15 ~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k 91 (951)
...||-.++ |+.+..-.|++.+.. | |..-| .|.|.+.+.+ .+.+|.-+-||+|||.||+.||++
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~ 73 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSD-----V------QIHVP-TFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINI 73 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEE-----C------SSSSC-EEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeE-----C------CCCCC-eEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHH
Confidence 357888765 455655689875332 1 22334 8999999988 667799999999999999999999
Q ss_pred cC
Q 002222 92 LG 93 (951)
Q Consensus 92 lg 93 (951)
|+
T Consensus 74 L~ 75 (84)
T 2dix_A 74 LK 75 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 96
No 293
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.87 E-value=0.0029 Score=57.26 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002222 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (951)
...||-+++ |+.+-. -.|++.+... |...| .|.|.+.+.+. +..|.-+-||+|||.||+.||+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~ 71 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERG-----------MPRRR-EFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLL 71 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEES-----------CSTTC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeEC-----------CCCCC-eEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHH
Confidence 357888775 555654 5898753321 22233 79999999885 6679999999999999999999
Q ss_pred HcCC
Q 002222 91 KLGI 94 (951)
Q Consensus 91 klg~ 94 (951)
+|+-
T Consensus 72 ~L~~ 75 (89)
T 1uhz_A 72 QLGY 75 (89)
T ss_dssp HHTS
T ss_pred HHhc
Confidence 9974
No 294
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.87 E-value=0.0019 Score=72.42 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.++++||=||-|.|..++.++++.. .+|+.|||+++.++.|++.+....... .. ....++++++.+|+..+-
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~--~d--~pr~~rv~vii~Da~~fl~~ 277 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDV--LD--NLKGDCYQVLIEDCIPVLKR 277 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----C--CS--SSEETTEEEEESCHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhh--hc--cccccceeeehHHHHHHHHh
Confidence 3578999999999999999999863 799999999999999987643111000 00 012246899999987542
Q ss_pred --CCCCCccEEEEccc-------cccCch-hHHHHHHHHHHHccCCCEEEEE
Q 002222 789 --SRLHGFDIGTCLEV-------IEHMEE-DEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 789 --~~d~sFDlVVcieV-------LEHL~d-D~l~~L~eeL~RvLKPGvLIIS 830 (951)
...+.||+|+.--. -.+... .--..|.+.+.+.|+||+++++
T Consensus 278 ~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 278 YAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 23467999986321 111111 1113455678999999966553
No 295
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=96.82 E-value=0.0015 Score=55.87 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=45.7
Q ss_pred hHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 18 PKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 18 pka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
||-.++ |+-|-. -.|++.+.. | |...| .|.|.+.+.+. +-+|.-+-||+|||.||+.||++|+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQES-----G------PPHKR-EFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEE-----S------CGGGC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeE-----C------CCCCC-eEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 555543 555554 478764321 1 12233 89999999996 7779999999999999999999985
No 296
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=96.80 E-value=0.0033 Score=70.45 Aligned_cols=108 Identities=13% Similarity=0.022 Sum_probs=69.0
Q ss_pred CCEEEEEcCccchhHHHHhcC--------C--------CCCceEEEEeCC-----------hHHHHHHHHHHHhhhhccc
Q 002222 713 ATTLVDFGCGSGSLLDSLLDY--------P--------TALEKIVGVDIS-----------QKSLSRAAKIIHSKLSKKL 765 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~--------g--------~~~~qVVGVDIS-----------eemLe~ArkrLsa~ls~~~ 765 (951)
..+|+|+|||+|..+..+... . .+..+|+.-|+- +.+.+.+++..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-------- 124 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-------- 124 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT--------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc--------
Confidence 578999999999988755432 1 234789999987 33333222110
Q ss_pred ccCCCCCCCccEEEEEc---cccccCCCCCCccEEEEccccccCchhH--------------------------------
Q 002222 766 DAAVPCTDVKSAVLFDG---SITVFDSRLHGFDIGTCLEVIEHMEEDE-------------------------------- 810 (951)
Q Consensus 766 ~~l~Pr~~~~nVtf~qG---Da~dLp~~d~sFDlVVcieVLEHL~dD~-------------------------------- 810 (951)
+...+..|..| +.-...++.++||+|+++.+|||+...+
T Consensus 125 ------g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~ 198 (384)
T 2efj_A 125 ------GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLD 198 (384)
T ss_dssp ------CCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHH
T ss_pred ------cCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHH
Confidence 11112244444 4444667889999999999999987321
Q ss_pred -----HHHHHHHHHHccCCC-EEEEEecCC
Q 002222 811 -----ASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 811 -----l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
...|++...+.|+|| .+++++...
T Consensus 199 Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 199 QFTKDFTTFLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEecC
Confidence 112355568999999 777777654
No 297
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.79 E-value=0.0016 Score=69.44 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHh
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 759 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa 759 (951)
.+.+++... .++..|||++||+|..+..+++.+ .+++|+|+++.+++.|++++..
T Consensus 225 ~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 225 AERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 334444444 567899999999999999999988 7999999999999999998764
No 298
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=96.77 E-value=0.002 Score=56.27 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=47.8
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002222 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 17 tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
.||-.++ |+.|.. -.|++.+.. | |..-| .|.|.+.+.+-.+.+|.=+-||+|||.||+.||++|
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVE-----T------LGRVT-QFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEE-----C------SSSCE-EEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeecc-----C------CCCCC-cEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 4666654 555554 478764322 1 22233 899999998866667888999999999999999999
Q ss_pred CC
Q 002222 93 GI 94 (951)
Q Consensus 93 g~ 94 (951)
+-
T Consensus 73 ~~ 74 (76)
T 3adj_A 73 QS 74 (76)
T ss_dssp HC
T ss_pred hh
Confidence 63
No 299
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=96.75 E-value=0.0025 Score=70.87 Aligned_cols=113 Identities=11% Similarity=0.028 Sum_probs=77.1
Q ss_pred CCEEEEEcCccchhHHHHhcC---------------CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 713 ATTLVDFGCGSGSLLDSLLDY---------------PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~---------------g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
.-+|+|+||++|..+..+... ..+..+|+.-|+........-+.+.... ...+..-+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--------~~~~~~f~ 123 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--------DVDGVCFI 123 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--------SCTTCEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--------ccCCCEEE
Confidence 457999999999988655433 2345789999998888877765543210 00111112
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchh-------------------------------HHHHHHHHHHHccCCC-
Q 002222 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEED-------------------------------EASQFGNIVLSSFRPR- 825 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD-------------------------------~l~~L~eeL~RvLKPG- 825 (951)
.-+.|+.-...++.+++|+|+++.+|||+..- +...|++...+.|+||
T Consensus 124 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG 203 (359)
T 1m6e_X 124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG 203 (359)
T ss_dssp EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred EecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 23445555577889999999999999998731 2345567789999999
Q ss_pred EEEEEecC
Q 002222 826 ILIVSTPN 833 (951)
Q Consensus 826 vLIISTPN 833 (951)
.+++++..
T Consensus 204 ~mvl~~~g 211 (359)
T 1m6e_X 204 RMVLTILG 211 (359)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEec
Confidence 77776653
No 300
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.73 E-value=0.0052 Score=55.57 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002222 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (951)
...||-.++ |+.+-. -.|++.+.. | |...| .|.|.+.+.+. +-+|.-+-||+|||.||+.||+
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~-----G------p~h~~-~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~ 81 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQES-----G------PAHRK-EFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLL 81 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEE-----C------CSSSC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeE-----C------CCCCC-eEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHH
Confidence 457888775 455554 578764321 1 22334 89999999996 7779999999999999999999
Q ss_pred HcC
Q 002222 91 KLG 93 (951)
Q Consensus 91 klg 93 (951)
+|+
T Consensus 82 ~L~ 84 (89)
T 2cpn_A 82 RVS 84 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 301
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.72 E-value=0.0027 Score=63.02 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccc-hhHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002222 700 RVEYALQHIKESCATTLVDFGCGSG-SLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG-~ll~~LAk-~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
-.+|+.+.. ..+.+|||||||.| ..+..|++ .+ ..|+++|+++..++
T Consensus 25 LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~-------------------------- 73 (153)
T 2k4m_A 25 LAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG-------------------------- 73 (153)
T ss_dssp HHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT--------------------------
T ss_pred HHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc--------------------------
Confidence 334544433 24579999999999 69999997 66 78999999886443
Q ss_pred EEEEccccccCCCC-CCccEEEEccc
Q 002222 778 VLFDGSITVFDSRL-HGFDIGTCLEV 802 (951)
Q Consensus 778 tf~qGDa~dLp~~d-~sFDlVVcieV 802 (951)
+++.|+.+..... ..||+|.++.-
T Consensus 74 -~v~dDiF~P~~~~Y~~~DLIYsirP 98 (153)
T 2k4m_A 74 -IVRDDITSPRMEIYRGAALIYSIRP 98 (153)
T ss_dssp -EECCCSSSCCHHHHTTEEEEEEESC
T ss_pred -eEEccCCCCcccccCCcCEEEEcCC
Confidence 4566776644322 48999988765
No 302
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=96.70 E-value=0.0011 Score=60.65 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=68.8
Q ss_pred CChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHH
Q 002222 101 PSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTY 180 (951)
Q Consensus 101 ~~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 180 (951)
|-++|.-+.|+.+|.|-|||+=|.-++=|..|+ .++. =|.||+++||.+- |+.++.. | ..+
T Consensus 5 ~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m----~~~~--~G~Vpl~~i~sF~-r~k~lt~--------d----~~~ 65 (92)
T 1s29_A 5 PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKM----AENA--EGFVSLETLLTFK-RVNSVTT--------D----VKE 65 (92)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHH----TTST--TCCEEHHHHTTSH-HHHTTCS--------C----HHH
T ss_pred CCCHHHHHHHHHHHHhhcchhhhccCHHHHHHh----ccCC--CCCEEhHHHhCCh-hHHHHcC--------C----HHH
Confidence 456788899999999999999888887555555 3333 4899999999873 5555543 2 467
Q ss_pred HHHHhhccCCcEEeecCceeeeecCCCC
Q 002222 181 IMRAATRLSEFVVTSEGQLSIWRKDPYP 208 (951)
Q Consensus 181 ~~~a~~~~~~~~~~s~~~~~~~~~~p~~ 208 (951)
|..|.+.++- |.+++++..|+|..|+|
T Consensus 66 i~~al~~S~~-lev~edg~~VRR~~PlP 92 (92)
T 1s29_A 66 VVEAIRPSEK-LVLSEDGLMVRRRDPLP 92 (92)
T ss_dssp HHHHHTTCSS-EEECTTSSEEEESSCCC
T ss_pred HHHHHhhCCe-EEEeCCCCEEeCCCCCC
Confidence 8888887655 89999999999999997
No 303
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=96.66 E-value=0.0028 Score=57.26 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=51.4
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002222 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (951)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (951)
.....||-.+. |+-|-. -.|++.+.. | |.-.| .|.|.+.+.+. +-+|.-+-||+|||.||+.|
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~-----G------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~A 78 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQES-----G------PAHRK-EFTMTCRVERF-IEIGSGTSKKLAKRNAAAKM 78 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEE-----S------CTTSC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeE-----C------CCCCC-eEEEEEEECCE-EEEEeeCCHHHHHHHHHHHH
Confidence 45568888875 455554 578774321 1 22234 79999999986 66799999999999999999
Q ss_pred HHHcCC
Q 002222 89 LEKLGI 94 (951)
Q Consensus 89 l~klg~ 94 (951)
|++|+-
T Consensus 79 L~~L~~ 84 (88)
T 3adl_A 79 LLRVHT 84 (88)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 999974
No 304
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=96.65 E-value=0.0043 Score=58.82 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002222 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (951)
Q Consensus 15 ~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (951)
...||.++. .|-++-.|++.+.. | |.--| .|.|.+.+.+... +|.-+-||+|||.||+.||++|+-
T Consensus 36 ~kd~Ks~LQ-E~~q~p~Y~~v~~~-----G------p~H~k-~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 101 (114)
T 2ljh_A 36 PKNTVAMLN-ELRHGLIYKLESQT-----G------PVHAP-LFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQ 101 (114)
T ss_dssp CSCHHHHHH-HHCSCCEEEEEEEE-----C------CSSSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHH-HHccCCeEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHc
Confidence 357887765 45666788775322 1 22233 8999999988766 899999999999999999999986
Q ss_pred CCCC
Q 002222 95 DPSP 98 (951)
Q Consensus 95 ~~~~ 98 (951)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2ljh_A 102 FKDG 105 (114)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5553
No 305
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.64 E-value=0.0012 Score=59.51 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=49.5
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 17 tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
.||-+++ |+-|....|+ ++ .| |.-.|..|.|.+.+.+...-+|.-+-||+|||.||+.||++|+
T Consensus 7 d~Kt~LqE~~Q~~~~~~~Y~-~~------~G------p~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 73 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSVNYE-QC------EP------NSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLL 73 (88)
T ss_dssp CHHHHHHHHHHHTTCCEEEE-EC------CC------SSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCeeE-Ee------eC------CCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 6787765 4445555776 21 11 2233336999999988666678889999999999999999998
Q ss_pred CCCC
Q 002222 94 IDPS 97 (951)
Q Consensus 94 ~~~~ 97 (951)
-.|.
T Consensus 74 ~~~~ 77 (88)
T 1x48_A 74 KSPP 77 (88)
T ss_dssp HSCC
T ss_pred hcCC
Confidence 7655
No 306
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.57 E-value=0.0057 Score=67.86 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=85.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.....+...++.+|||+.+|.|.-+..|+..+ ....|+++|+++.-++..++++....... .....++.+...
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~------~~~~~~v~v~~~ 211 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEE------IRDGNQVRVTSW 211 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTT------TTTSSSEEEECC
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhh------hccCCceEEEeC
Confidence 44556677888999999999999999998876 34689999999999988887775432100 012247889999
Q ss_pred cccccCC-CCCCccEEEE----cc----ccc-------cCchh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002222 783 SITVFDS-RLHGFDIGTC----LE----VIE-------HMEED-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~-~d~sFDlVVc----ie----VLE-------HL~dD-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|...++. ..+.||.|++ ++ ++. ....+ ....+.+...++|||| .++-+|-.
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 9887653 3568999995 33 221 11111 1234555688999999 66666654
No 307
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=96.55 E-value=0.0023 Score=55.40 Aligned_cols=64 Identities=28% Similarity=0.299 Sum_probs=47.4
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHHHHHH
Q 002222 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEKALEK 91 (951)
Q Consensus 17 tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~al~k 91 (951)
.||-.++ |+.|-. -.|++.+ +. |...| .|.|.+.+.+..+.+|.= +-||+|||.||+.||++
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~--~G----------p~h~~-~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~ 70 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVK--EG----------PSHKS-LFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRE 70 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEE--ES----------STTSC-EEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEe--EC----------CCCCC-eEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHH
Confidence 4666654 555655 4787764 21 23344 899999998866667887 89999999999999999
Q ss_pred cC
Q 002222 92 LG 93 (951)
Q Consensus 92 lg 93 (951)
|+
T Consensus 71 L~ 72 (73)
T 3adg_A 71 LA 72 (73)
T ss_dssp HT
T ss_pred hh
Confidence 85
No 308
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=96.53 E-value=0.0021 Score=55.61 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=46.8
Q ss_pred CChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002222 16 LTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 16 ~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
..||-.++ |+ ...-.|++.+.. | |...| .|.|.+.+.+... +|.-+-||+|||.||+.||++|
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L 69 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQT-----G------PVHAP-LFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSF 69 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEE-----C------SSSSC-EEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHH
Confidence 35666654 44 334578764321 1 22334 8999999998664 8999999999999999999998
Q ss_pred CC
Q 002222 93 GI 94 (951)
Q Consensus 93 g~ 94 (951)
..
T Consensus 70 ~~ 71 (73)
T 2b7t_A 70 VQ 71 (73)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 309
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.47 E-value=0.0034 Score=57.52 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=51.8
Q ss_pred cCCCChHhHH---HHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002222 13 KMKLTPKAII---VQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (951)
Q Consensus 13 ~~~~tpka~~---~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (951)
.....||-.+ .|+. ..-.|++.+.. | |..-| .|.|.+.+.+... +|.=+-||+|||.||+.||
T Consensus 13 ~~~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~-----G------p~H~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL 78 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR-PGLQYKLLSQS-----G------PVHAP-VFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVL 78 (97)
T ss_dssp CCSSSCTHHHHHHHHHS-CSCCCEEEEEE-----S------CSSSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcC-CCceEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHH
Confidence 3445688776 4664 34568765332 1 22234 8999999988665 8999999999999999999
Q ss_pred HHcCCCCC
Q 002222 90 EKLGIDPS 97 (951)
Q Consensus 90 ~klg~~~~ 97 (951)
++|+.+..
T Consensus 79 ~~L~~~~~ 86 (97)
T 2dmy_A 79 QAMGYPTG 86 (97)
T ss_dssp HHHTCCCS
T ss_pred HHhCCCCc
Confidence 99997443
No 310
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=96.40 E-value=0.0047 Score=57.24 Aligned_cols=69 Identities=28% Similarity=0.292 Sum_probs=48.7
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHH
Q 002222 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEK 87 (951)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~ 87 (951)
++...||..++ |+.|.. -.|++.+ + | |..-| .|.|.+.+.+..+.+|.- +-||+|||.||+.
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~--~----G------p~H~~-~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~ 80 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVK--E----G------PSHKS-LFQSTVILDGVRYNSLPGFFNRKAAEQSAAEV 80 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEE--E----S------CSSSC-EEEEEEEETTEEEECCSCBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEe--E----c------CCCCC-eEEEEEEECCEEEEEeecCCCHHHHHHHHHHH
Confidence 44556777664 566655 4898764 2 2 22334 899999999876677887 8999999999999
Q ss_pred HHHHcCC
Q 002222 88 ALEKLGI 94 (951)
Q Consensus 88 al~klg~ 94 (951)
||++|+-
T Consensus 81 AL~~L~~ 87 (103)
T 2l2n_A 81 ALRELAK 87 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999973
No 311
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=96.24 E-value=0.0065 Score=57.29 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=46.1
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecC----Cce-eeeccccccchHHHHHHHHH
Q 002222 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLP----EFS-VVSETFKKKKDAEQSAAEKA 88 (951)
Q Consensus 17 tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp----~~~-v~~~~~~~kkdaeq~aa~~a 88 (951)
.||-.++ |+-|..-.|+++|. | |..-| .|.|.+.+. +.. +.+|.-+-||+|||.||+.|
T Consensus 27 d~Kt~LqE~~Qk~~~~p~Y~~~~~------G------p~H~~-~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~A 93 (113)
T 1uil_A 27 NAKARLNQYFQKEKIQGEYKYTQV------G------PDHNR-SFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSL 93 (113)
T ss_dssp HHHHHHHHHHHHSCCCCCCEEEEE------S------CSTTC-EEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCeEEEeeE------C------CCCCC-cEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHH
Confidence 6787775 56565667875431 1 23344 888888886 444 44588999999999999999
Q ss_pred HHHcC
Q 002222 89 LEKLG 93 (951)
Q Consensus 89 l~klg 93 (951)
|++|.
T Consensus 94 L~~L~ 98 (113)
T 1uil_A 94 VRQLY 98 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 312
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.18 E-value=0.0073 Score=58.29 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCCChHhHHH---HhccCce-eEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHHH
Q 002222 14 MKLTPKAIIV---QKFGRNA-QFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEKA 88 (951)
Q Consensus 14 ~~~tpka~~~---q~~g~~~-~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~a 88 (951)
....||-++. |+-|... .|++.+. . ..| .|.|.+.+.+...-+|.= +-||+|||.||+.|
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~----~----------H~~-~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~A 88 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR----T----------IDR-MFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVC 88 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC----S----------SSC-CEEEEEEETTEEEEESSCBSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee----c----------CCC-cEEEEEEECCEEEEEEeccCCHHHHHHHHHHHH
Confidence 3467888775 4555543 7877643 1 122 799999998866667888 99999999999999
Q ss_pred HHHcCCCC
Q 002222 89 LEKLGIDP 96 (951)
Q Consensus 89 l~klg~~~ 96 (951)
|++|+...
T Consensus 89 L~~L~~~~ 96 (128)
T 1whn_A 89 LRSQGLPE 96 (128)
T ss_dssp HHHHTCSS
T ss_pred HHHHhccc
Confidence 99998643
No 313
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.18 E-value=0.019 Score=66.44 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhc----CCCC--------CceEEEEeCChHHHHHHHHHHHhhhhcccccC
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLD----YPTA--------LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 768 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk----~g~~--------~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l 768 (951)
.+++++++.+..+.+|+|-.||+|.|+....+ .... ...++|+|+++.+...|+-++- +
T Consensus 206 v~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~--l------- 276 (530)
T 3ufb_A 206 VRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL--L------- 276 (530)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH--H-------
T ss_pred HHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH--h-------
Confidence 35778888888888999999999999875543 2110 1369999999999999875542 1
Q ss_pred CCCCCCccEEEEEccccccCCC----CCCccEEEEcccc---------ccCc-----hhHHHHHHHHHHHccC-------
Q 002222 769 VPCTDVKSAVLFDGSITVFDSR----LHGFDIGTCLEVI---------EHME-----EDEASQFGNIVLSSFR------- 823 (951)
Q Consensus 769 ~Pr~~~~nVtf~qGDa~dLp~~----d~sFDlVVcieVL---------EHL~-----dD~l~~L~eeL~RvLK------- 823 (951)
.+.....+..+|....+.. ...||+|+++==+ ..++ .+..-.|...+.+.||
T Consensus 277 ---hg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~ 353 (530)
T 3ufb_A 277 ---HGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSD 353 (530)
T ss_dssp ---HTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSS
T ss_pred ---cCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccC
Confidence 1223345677777654432 3479999995211 1111 1122345566778887
Q ss_pred CC-EEEEEecC
Q 002222 824 PR-ILIVSTPN 833 (951)
Q Consensus 824 PG-vLIISTPN 833 (951)
|| .+.+.+|+
T Consensus 354 ~gGr~avVlP~ 364 (530)
T 3ufb_A 354 NGGRAAVVVPN 364 (530)
T ss_dssp SCCEEEEEEEH
T ss_pred CCceEEEEecc
Confidence 45 77777775
No 314
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=96.17 E-value=0.0024 Score=57.29 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=33.8
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002222 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (951)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (951)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+-
T Consensus 39 ~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 39 TYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 79999999886666788999999999999999999864
No 315
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.17 E-value=0.012 Score=63.40 Aligned_cols=118 Identities=10% Similarity=-0.014 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhh----cCCCCEEEEEcCccchhHHHHhcCC----CCCceEEEEeCChH---------------------
Q 002222 698 KQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYP----TALEKIVGVDISQK--------------------- 748 (951)
Q Consensus 698 ~QR~e~VldlL~----~~k~krVLDIGCGeG~ll~~LAk~g----~~~~qVVGVDISee--------------------- 748 (951)
.+|...+..+++ ...++.|||+|+..|..+..|+... .+..+|+++|..+.
T Consensus 88 ~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~ 167 (282)
T 2wk1_A 88 IKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRN 167 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccc
Confidence 556666555443 3567899999999999888775421 01368999996421
Q ss_pred -----HHHHHHHHHHhhhhcccccCCCCCC-CccEEEEEcccccc-CC-CCCCccEEEEccccccCchhHHHHHHHHHHH
Q 002222 749 -----SLSRAAKIIHSKLSKKLDAAVPCTD-VKSAVLFDGSITVF-DS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 820 (951)
Q Consensus 749 -----mLe~ArkrLsa~ls~~~~~l~Pr~~-~~nVtf~qGDa~dL-p~-~d~sFDlVVcieVLEHL~dD~l~~L~eeL~R 820 (951)
.++.+++++... +. ..+|+++.|++.+. +. ....||+|+.-.- ...... ...+.+..
T Consensus 168 ~~~~~~~~~ar~n~~~~-----------gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~-~~Le~~~p 232 (282)
T 2wk1_A 168 SVLAVSEEEVRRNFRNY-----------DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTW-DTLTNLYP 232 (282)
T ss_dssp HHHCCCHHHHHHHHHHT-----------TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHH-HHHHHHGG
T ss_pred ccchhHHHHHHHHHHHc-----------CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHH-HHHHHHHh
Confidence 355666665421 11 26899999999763 32 2467999976542 121222 33456899
Q ss_pred ccCCCEEEEE
Q 002222 821 SFRPRILIVS 830 (951)
Q Consensus 821 vLKPGvLIIS 830 (951)
.|+||.+|+.
T Consensus 233 ~L~pGGiIv~ 242 (282)
T 2wk1_A 233 KVSVGGYVIV 242 (282)
T ss_dssp GEEEEEEEEE
T ss_pred hcCCCEEEEE
Confidence 9999965553
No 316
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=96.16 E-value=0.0064 Score=66.14 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 692 FSPPLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
.|..-....+..+.+. .. .++++||||||+.|.++..+++.. ....|+|+|+...+..... .. .
T Consensus 61 ~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~------~~-------~ 125 (300)
T 3eld_A 61 ISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPI------HM-------Q 125 (300)
T ss_dssp CCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCC------CC-------C
T ss_pred CccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccc------cc-------c
Confidence 4444444444455444 32 367899999999999999999764 2467999999764311100 00 0
Q ss_pred CCCCccEEEEEccccccCCCCCCccEEEEccccccCch---hH--HHHHHHHHHHccCCC-EEEEE
Q 002222 771 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE---DE--ASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 771 r~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~d---D~--l~~L~eeL~RvLKPG-vLIIS 830 (951)
.... ++......+....+....+|+|+|-..-. -.. |. ...+.+.+.++|+|| .-++.
T Consensus 126 ~~~~-~iv~~~~~~di~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~ 189 (300)
T 3eld_A 126 TLGW-NIVKFKDKSNVFTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCV 189 (300)
T ss_dssp BTTG-GGEEEECSCCTTTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred ccCC-ceEEeecCceeeecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 0011 22222333332334457899999954433 221 11 122355567899998 55444
No 317
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=96.13 E-value=0.012 Score=58.88 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=49.5
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 17 tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
-||-+++ |+.|..-.|++.+ +. | |..-| .|.|.+.+.+..+.+|.-+-||+|||.||+.||++|.
T Consensus 14 n~ks~LqE~~q~~~~~p~Y~~~~--~~------G---p~h~~-~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~ 81 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVVLKYQELP--NS------G---PPHDR-RFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILN 81 (179)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEEE--SC------B---TTTBC-CEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCeEEEee--cc------C---CCCCC-eEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 4777764 5666667787542 11 1 22223 7999999988766678889999999999999999997
Q ss_pred CCC
Q 002222 94 IDP 96 (951)
Q Consensus 94 ~~~ 96 (951)
-.+
T Consensus 82 ~~~ 84 (179)
T 1qu6_A 82 KEK 84 (179)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 318
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=96.05 E-value=0.0098 Score=54.86 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred CChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHH
Q 002222 16 LTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEK 91 (951)
Q Consensus 16 ~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k 91 (951)
..||-.++ |+-+..-.|+++| +. |..- -.|.|.+.+.++ .+.+|.-+-||+|||.||+.||++
T Consensus 6 ~d~Kt~LqE~~Qk~~~~P~Y~~~~--~G----------p~H~-~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~ 72 (99)
T 1whq_A 6 SGIKNFLYAWCGKRKMTPAYEIRA--VG----------NKNR-QKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNY 72 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEEEE--EE----------CSSS-EEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCeEEEee--ec----------CCCC-CeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 35776664 3446667898832 11 1223 389999999995 666799999999999999999999
Q ss_pred cC
Q 002222 92 LG 93 (951)
Q Consensus 92 lg 93 (951)
|+
T Consensus 73 L~ 74 (99)
T 1whq_A 73 LV 74 (99)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 319
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=95.98 E-value=0.025 Score=61.82 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=78.3
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 691 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
..|+.-.-..+..+.+.....++.+||||||+.|.++.+.+... ....|+|+|+-...-+. +. ...
T Consensus 73 g~y~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~------P~-------~~~ 138 (321)
T 3lkz_A 73 GHPVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEE------PQ-------LVQ 138 (321)
T ss_dssp CCCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCC------CC-------CCC
T ss_pred CCccchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccC------cc-------hhh
Confidence 44555556666666665444567799999999999999777665 24689999986642100 00 000
Q ss_pred CCCCccEEEEEc-cccccCCCCCCccEEEEccccccCchhH---HH--HHHHHHHHccCCC--EEEEEecC
Q 002222 771 CTDVKSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHMEEDE---AS--QFGNIVLSSFRPR--ILIVSTPN 833 (951)
Q Consensus 771 r~~~~nVtf~qG-Da~dLp~~d~sFDlVVcieVLEHL~dD~---l~--~L~eeL~RvLKPG--vLIISTPN 833 (951)
+-+..-|.+..+ |+..++. ..+|+|+|--. |--+... .. ..++.+.++|++| -++|=+-.
T Consensus 139 ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 139 SYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp BTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred hcCCcceEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 123335899998 8877765 56999999554 4444211 11 1234446788776 55554444
No 320
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.89 E-value=0.0081 Score=55.19 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=51.4
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002222 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (951)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (951)
+...+||-+++ |+-|.. -.|++.+. .|. . | .|.|.+.+.+-.+.+|.-+-||+|||.||+.|
T Consensus 13 ~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~-----~Gp------~--~-~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~A 78 (98)
T 1x47_A 13 PNGKSEVCILHEYMQRVLKVRPVYNFFEC-----ENP------S--E-PFGASVTIDGVTYGSGTASSKKLAKNKAARAT 78 (98)
T ss_dssp TTCCCHHHHHHHHHHHHTCSCCEEEEEEC-----SSS------S--C-CEEEEEEETTEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEEe-----ECC------C--C-cEEEEEEECCEEEEEeeeCCHHHHHHHHHHHH
Confidence 35568888775 455554 47877532 121 1 3 79999999886667788999999999999999
Q ss_pred HHHcCCC
Q 002222 89 LEKLGID 95 (951)
Q Consensus 89 l~klg~~ 95 (951)
|++|+-.
T Consensus 79 L~~L~~~ 85 (98)
T 1x47_A 79 LEILIPD 85 (98)
T ss_dssp HHHHCSS
T ss_pred HHHHHhh
Confidence 9999843
No 321
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.85 E-value=0.0067 Score=67.17 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=63.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+++.+...++..++|..||.|..+..+++..++..+|+|+|.++++++.|+ ++ ...+++++++
T Consensus 48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---------------~~~Rv~lv~~ 111 (347)
T 3tka_A 48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---------------DDPRFSIIHG 111 (347)
T ss_dssp HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---------------CCTTEEEEES
T ss_pred HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---------------cCCcEEEEeC
Confidence 5666667778899999999999999999987545689999999999999984 43 1248999999
Q ss_pred cccccCC---C--C-CCccEEEE
Q 002222 783 SITVFDS---R--L-HGFDIGTC 799 (951)
Q Consensus 783 Da~dLp~---~--d-~sFDlVVc 799 (951)
+..++.. . . +.+|.|+.
T Consensus 112 nF~~l~~~L~~~g~~~~vDgILf 134 (347)
T 3tka_A 112 PFSALGEYVAERDLIGKIDGILL 134 (347)
T ss_dssp CGGGHHHHHHHTTCTTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCCcccEEEE
Confidence 9887642 1 1 25888876
No 322
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.47 E-value=0.016 Score=61.72 Aligned_cols=127 Identities=10% Similarity=0.126 Sum_probs=77.9
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 691 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
.-|..-.-..+..+.+.....++.+||||||+.|.++.+.+... ...+|+|+|+-..--+. +. ...
T Consensus 57 g~yrSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~------P~-------~~~ 122 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEE------PV-------PMS 122 (267)
T ss_dssp SCCSSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC------CC-------CCC
T ss_pred CCccchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccC------cc-------hhh
Confidence 34444455555566555544577899999999999999777665 24689999986532210 00 011
Q ss_pred CCCCccEEEEEc-cccccCCCCCCccEEEEccccccCch--hHHH--HHHHHHHHccCCCEEEEEecC
Q 002222 771 CTDVKSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHMEE--DEAS--QFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 771 r~~~~nVtf~qG-Da~dLp~~d~sFDlVVcieVLEHL~d--D~l~--~L~eeL~RvLKPGvLIISTPN 833 (951)
..+...|+|.++ |+..++. ..+|.|+|-..=..=.+ |... ..++.+.++|+++.+++=+-.
T Consensus 123 s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~~~fc~KVl~ 188 (267)
T 3p8z_A 123 TYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKNNQFCIKVLN 188 (267)
T ss_dssp CTTTTSEEEECSCCGGGCCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSSCEEEEEESC
T ss_pred hcCcCceEEEeccceeecCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhcccCCEEEEEcc
Confidence 235568999999 9877665 66999999533211111 1111 133445688988855544433
No 323
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=95.36 E-value=0.049 Score=50.95 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCceeeecc-CCCCCCccCCCCceeEEEEEEEEeecccchhhhhcc------ccceEEEeccCccchhhhhhhhhccccc
Q 002222 563 EHGIYCLSI-GGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLES------REEFEFEMGTGAVIPQVEVVTAQMSVGQ 635 (951)
Q Consensus 563 ~~~~~~~~~-~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~------~~~~~fe~g~~a~~~~l~~v~~q~sv~q 635 (951)
...+....| +|.+.|--|..|+.+.|.|+..|..+|+ ++++ ...++|.+|.|.+++-++..+..|.+|.
T Consensus 11 ~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~----~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 86 (125)
T 4dip_A 11 EPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGS----LFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE 86 (125)
T ss_dssp CCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCC----EEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred CCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCc----EEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence 445555555 5778899999999999999999975554 3333 3679999999999999999999999999
Q ss_pred cceecccCCchhhhhhhccCcccchhcccccccccceeeeecccCC
Q 002222 636 SACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTE 681 (951)
Q Consensus 636 ~~~~~~~l~~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e 681 (951)
.+.+. +||..-+=.... ..++..+. +.|.|.++.+.+
T Consensus 87 ~~~~~--ip~~~aYG~~g~------~~Ip~~~~-l~f~vel~~i~~ 123 (125)
T 4dip_A 87 KRKLI--IPPALGYGKEGK------GKIPPEST-LIFNIDLLEIRN 123 (125)
T ss_dssp EEEEE--ECGGGTTTTTCB------TTBCTTCC-EEEEEEEEEEEC
T ss_pred EEEEE--EChHHhcCCCCC------CCCCCCCe-EEEEEEEEEEEc
Confidence 98887 666544432221 13455555 888888887554
No 324
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=95.20 E-value=0.017 Score=53.13 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHHcC
Q 002222 24 QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 24 q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
|+.+..-.|+|.+ + | |. --| .|...+.+.+- .+.+|.=+-||.|||.||+.||++|.
T Consensus 17 Q~~~~~p~Y~v~~--~----G-pd-----H~k-~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 17 GYASLRLHYVTVK--K----P-TA-----VDP-NSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CSSSSCCEEEECC--C----C-SS-----SCC-SEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred cCCCCCCEEEEee--e----C-CC-----CCC-eEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 5555556788743 1 2 22 223 89999999987 56679999999999999999999763
No 325
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=95.08 E-value=0.032 Score=58.24 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002222 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
.+.+++... .++..|||..||+|..+....+.+ .+++|+|+++.+++.|++++.
T Consensus 202 ~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 202 IERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp HHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 334444433 567899999999999999998887 799999999999999998875
No 326
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=95.05 E-value=0.12 Score=56.53 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHHHHH----hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhc---cc-ccCCCC
Q 002222 700 RVEYALQH----IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK---KL-DAAVPC 771 (951)
Q Consensus 700 R~e~Vldl----L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~---~~-~~l~Pr 771 (951)
|..++-+. +...+...|+.+|||.......|.... +...++-||. ++.++.-++.+.....- .. ....+.
T Consensus 81 Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~ 158 (334)
T 1rjd_A 81 RTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTA 158 (334)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccc
Confidence 55554444 333567899999999999998887642 1367888887 88887777666532100 00 000000
Q ss_pred C-----CCccEEEEEccccccCC---------CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEE
Q 002222 772 T-----DVKSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILI 828 (951)
Q Consensus 772 ~-----~~~nVtf~qGDa~dLp~---------~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLI 828 (951)
. ...+..++.+|+.+.+. ......++++-.|+.+|+++....+.+.+.+.+..+.++
T Consensus 159 ~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~~~~~v 229 (334)
T 1rjd_A 159 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWI 229 (334)
T ss_dssp CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred ccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 0 12578899999987432 123467889999999999999888888888877444444
No 327
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=94.77 E-value=0.049 Score=56.96 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=52.0
Q ss_pred cccCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHH
Q 002222 11 VRKMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAE 86 (951)
Q Consensus 11 ~~~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~ 86 (951)
......+||-+++ |+.|.. -.|++.+. .| .. | .|.|.+.+.+..+.+|.-+-||+|||.||+
T Consensus 17 ~~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~-----~G---p~-----~-~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~ 82 (232)
T 2yt4_A 17 INPNGKSEVCILHEYMQRVLKVRPVYNFFEC-----EN---PS-----E-PFGASVTIDGVTYGSGTASSKKLAKNKAAR 82 (232)
T ss_dssp ECCTTSCHHHHHHHHHHHTTCCCCEEEEEEC-----SC---TT-----S-CEEEEEEETTEEEEEEEESSHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHcCCCCCeEEEEee-----EC---CC-----C-cEEEEEEECCEEEeecCCCCHHHHHHHHHH
Confidence 3445678998875 555544 47877421 12 11 3 799999999877778888999999999999
Q ss_pred HHHHHcCC
Q 002222 87 KALEKLGI 94 (951)
Q Consensus 87 ~al~klg~ 94 (951)
.||++|+-
T Consensus 83 ~aL~~L~~ 90 (232)
T 2yt4_A 83 ATLEILIP 90 (232)
T ss_dssp HHHHHHST
T ss_pred HHHHHHHh
Confidence 99999974
No 328
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=94.73 E-value=0.07 Score=50.22 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=71.6
Q ss_pred CC-CCCCccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCch
Q 002222 572 GG-PDSGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646 (951)
Q Consensus 572 ~~-~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~ 646 (951)
+| ..+|-.|..|+.+.|.|+.++..+|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.|. +||.
T Consensus 25 ~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~----~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~--ip~~ 98 (129)
T 2vn1_A 25 KGDEGEENIPKKGNEVTVHYVGKLESTGK----VFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVR--IESM 98 (129)
T ss_dssp CCCCSGGGSCCTTCEEEEEEEEEETTTCC----EEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGG
T ss_pred CCCCCCCCcCCCCCEEEEEEEEEECCCCe----EEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEE--EChH
Confidence 57 55789999999999999999844554 3443 367999999999999999999999999999887 5654
Q ss_pred hhhhhhccCcccchhcccccccccceeeeecccCC
Q 002222 647 ELILAAADDSARTFSLLSSRACCLEYHITLLRVTE 681 (951)
Q Consensus 647 ~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e 681 (951)
.-+=.... . ..+|.... +.|.|.++.+.+
T Consensus 99 ~aYG~~~~---~--~~Ip~~~~-l~f~vel~~v~~ 127 (129)
T 2vn1_A 99 YGYGDEGC---G--ESIPGNSV-LLFEIELLSFRE 127 (129)
T ss_dssp GTTTTTCB---T--TTBCTTCC-EEEEEEEEEEEC
T ss_pred HcCCCCCC---C--CCcCCCCe-EEEEEEEEEEec
Confidence 43322111 0 12445555 788888876543
No 329
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=94.67 E-value=0.075 Score=55.63 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002222 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (951)
Q Consensus 15 ~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (951)
...||.++++- ...-.|++.+. .| |.-.| .|.|.+.+-+.. ..|.-+-||.|||.||+.||++|+.
T Consensus 160 ~~d~ks~LqE~-~~~p~Y~~~~~-----~G------p~h~~-~F~~~v~v~~~~-~~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 160 GKNPVMILNEL-RPGLKYDFLSE-----SG------ESHAK-SFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp SCCHHHHHHHH-CCCEEEEEECC-----SS------SSSSC-CEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhc-CCCCcEEEEEe-----eC------CCCCC-eEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHcc
Confidence 45789887765 55567865421 11 22334 789999888864 4899999999999999999999974
Q ss_pred C
Q 002222 95 D 95 (951)
Q Consensus 95 ~ 95 (951)
.
T Consensus 226 ~ 226 (236)
T 2l3j_A 226 L 226 (236)
T ss_dssp C
T ss_pred c
Confidence 3
No 330
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=94.62 E-value=0.047 Score=56.13 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=49.2
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002222 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (951)
...||..+. |+.|.. -.|++.+.. | |...| .|.|.+.+.+. +.+|.-+-||+|||.||+.||+
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~-----G------~~h~~-~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~ 215 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVE-----G------PHHKK-KFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIK 215 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEE-----S------CGGGC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEee-----C------CCCCc-eEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHH
Confidence 357887764 444443 578775321 1 22233 89999999998 7779999999999999999999
Q ss_pred HcC
Q 002222 91 KLG 93 (951)
Q Consensus 91 klg 93 (951)
+|+
T Consensus 216 ~L~ 218 (221)
T 2nug_A 216 LLE 218 (221)
T ss_dssp HHC
T ss_pred Hhh
Confidence 997
No 331
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=94.52 E-value=0.056 Score=48.61 Aligned_cols=92 Identities=22% Similarity=0.338 Sum_probs=66.9
Q ss_pred CccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhh
Q 002222 577 GIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAA 652 (951)
Q Consensus 577 ~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa 652 (951)
|--|..|+.+.|.|+..+ .+|+ .+++ ...|+|.+|.|.+.+-++..+..|.+|..+.|. +||..-+=..
T Consensus 3 g~~~~~gd~V~v~y~~~~-~dG~----~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~--ip~~~ayG~~ 75 (102)
T 2pbc_A 3 PIKSRKGDVLHMHYTGKL-EDGT----EFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLV--IPSELGYGER 75 (102)
T ss_dssp CCCCCTTCEEEEEEEEEC-TTSC----EEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEE--ECGGGTTTTT
T ss_pred CCcCCCCCEEEEEEEEEE-CCCC----EEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE--ECHHHCcCCC
Confidence 345899999999999997 3454 4554 467999999999999999999999999999875 6665433222
Q ss_pred ccCcccchhcccccccccceeeeecccCC
Q 002222 653 ADDSARTFSLLSSRACCLEYHITLLRVTE 681 (951)
Q Consensus 653 ~~~~~~DiSlL~~d~~~LEyyI~LL~v~e 681 (951)
.. . ..++.... +.|.|.++.+..
T Consensus 76 ~~---~--~~Ip~~~~-l~f~v~l~~v~~ 98 (102)
T 2pbc_A 76 GA---P--PKIPGGAT-LVFEVELLKIER 98 (102)
T ss_dssp CB---T--TTBCTTCC-EEEEEEEEEEGG
T ss_pred CC---C--CCcCcCCe-EEEEEEEEEecc
Confidence 11 0 12344454 888888877654
No 332
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=94.47 E-value=0.065 Score=56.34 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCChHhHHH---HhccC-ceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002222 15 KLTPKAIIV---QKFGR-NAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 15 ~~tpka~~~---q~~g~-~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (951)
...||..+. |+-|. .-.|++.+. .| |...| .|.|.+.+.+-.+.+|.-+-||+|||.||+.||+
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~-----~G------p~h~~-~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~ 245 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRT-----EK------NDGDR-IFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYE 245 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEE-----EC------CTTSC-EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEee-----eC------CCCCC-eEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHH
Confidence 457887764 44443 467887532 11 22233 7999999999777779999999999999999999
Q ss_pred HcCC
Q 002222 91 KLGI 94 (951)
Q Consensus 91 klg~ 94 (951)
+|+-
T Consensus 246 ~L~~ 249 (252)
T 1o0w_A 246 KLLK 249 (252)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 9973
No 333
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=94.30 E-value=0.048 Score=52.04 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=46.2
Q ss_pred CChHhHH---HHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHH
Q 002222 16 LTPKAII---VQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEK 91 (951)
Q Consensus 16 ~tpka~~---~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k 91 (951)
.-||-.+ -|+++..-.|+|.+. . |.--| .|...+.+.+- .+..|.=+-||.|||.||+.||++
T Consensus 8 ~D~KT~LQE~~Q~~~~~P~Y~vv~~--G----------PdH~k-~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~ 74 (117)
T 1t4o_A 8 MNAKRQLYSLIGYASLRLHYVTVKK--P----------TAVDP-NSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRD 74 (117)
T ss_dssp TTHHHHHHHHHCCGGGCCEEEEEEC--C----------CSSCC-CEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHcCCCCCCEEEEeee--C----------CCCCC-eEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3566543 356665567987641 1 12233 89999999987 566799999999999999999876
Q ss_pred cC
Q 002222 92 LG 93 (951)
Q Consensus 92 lg 93 (951)
|.
T Consensus 75 l~ 76 (117)
T 1t4o_A 75 KK 76 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 334
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=94.06 E-value=1.1 Score=48.40 Aligned_cols=124 Identities=12% Similarity=0.002 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002222 698 KQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 698 ~QR~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
-.|..++-+.+.. .....|++||||-=.....+.. . ....++=|| .+..++..++.+.... ....
T Consensus 85 ~~Rt~~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~-~-~~~~v~evD-~P~vi~~k~~lL~~~~---------~~~~ 152 (310)
T 2uyo_A 85 AVRTNFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDW-P-TGTTVYEID-QPKVLAYKSTTLAEHG---------VTPT 152 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCC-C-TTCEEEEEE-CHHHHHHHHHHHHHTT---------CCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeCCCCCchhhhccC-C-CCcEEEEcC-CHHHHHHHHHHHHhcC---------CCCC
Confidence 3355454444432 3457899999998777776653 1 226899999 6999998888775211 1123
Q ss_pred ccEEEEEccccccCC----CCCC-----ccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 775 KSAVLFDGSITVFDS----RLHG-----FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~----~d~s-----FDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.+..++.+|+.+ .. ...+ --++++-.+++|++++....+.+.+...+.|| .+++...+.
T Consensus 153 ~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 153 ADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 478889999876 31 1122 34778889999999888888888888888899 777765544
No 335
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=93.97 E-value=0.096 Score=58.09 Aligned_cols=61 Identities=5% Similarity=-0.054 Sum_probs=48.5
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
++..|||||.|.|.++..|++.. ...+|++|++++.++..-++.+ ...+++++++|+.+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~---------------~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF---------------EGSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT---------------TTSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc---------------cCCCEEEEECCccchh
Confidence 35899999999999999999752 1168999999999988776643 1247999999997654
No 336
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=93.84 E-value=0.2 Score=46.42 Aligned_cols=97 Identities=21% Similarity=0.315 Sum_probs=69.2
Q ss_pred ccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhh
Q 002222 570 SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELI 649 (951)
Q Consensus 570 ~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~ 649 (951)
-.+|......|..|+.+.|.|...+ .+|+ .+++...|+|.+|.+.+.+-++..+..|.+|..+.|. +||..-+
T Consensus 20 l~~G~G~~~~~~~gd~V~v~y~g~~-~dG~----~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~--ip~~~ay 92 (118)
T 2awg_A 20 LVPGPPGSSRPVKGQVVTVHLQTSL-ENGT----RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT--ADSKYCY 92 (118)
T ss_dssp EECCCTTCCCCCTTSEEEEEEEEEC-TTSC----EEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEE--ECGGGTT
T ss_pred EEcCCCCCccCCCCCEEEEEEEEEE-CCCC----EEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEE--EChHHcc
Confidence 3456433347999999999999987 3443 5677889999999999999999999999999999886 5654432
Q ss_pred hhhccCcccchhcccccccccceeeeeccc
Q 002222 650 LAAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 650 lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
=..... ..++..+. +.|.|.++.+
T Consensus 93 G~~~~~-----~~Ip~~~~-l~f~v~l~~v 116 (118)
T 2awg_A 93 GPQGRS-----PYIPPHAA-LCLEVTLKTA 116 (118)
T ss_dssp TTTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred CCCCCC-----CccCCCCe-EEEEEEEEEe
Confidence 211110 12344444 7777777654
No 337
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=93.55 E-value=0.13 Score=51.74 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccC-ccchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTG-AVIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 654 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~-a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 654 (951)
+|-.|..|+.|.|.|+..|..+|+-...-.+....|+|.+|.| .+++-++..+..|.+|..+.|. +||..-+=....
T Consensus 60 ~G~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~--iPp~~aYG~~g~ 137 (180)
T 2f4e_A 60 HGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH--VGWELAYGKEGN 137 (180)
T ss_dssp BSCCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEE--ECGGGTTTTTCB
T ss_pred CCCCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEE--ECchHhCCcCCc
Confidence 4778999999999999998655542211112246799999999 9999999999999999999987 566433322111
Q ss_pred CcccchhcccccccccceeeeecccCCChh
Q 002222 655 DSARTFSLLSSRACCLEYHITLLRVTEPPE 684 (951)
Q Consensus 655 ~~~~DiSlL~~d~~~LEyyI~LL~v~ep~E 684 (951)
.+...++-... +.|.|.++.+..+.+
T Consensus 138 ---~~~~~Ip~~s~-l~F~VeL~~v~~~~e 163 (180)
T 2f4e_A 138 ---FSFPNVPPMAD-LLYEVEVIGFDETKE 163 (180)
T ss_dssp ---SSSSCBCTTCC-EEEEEEEEEESCBCC
T ss_pred ---ccCCCcCCCCe-EEEEEEEEEEecCcc
Confidence 11122455555 899999998776554
No 338
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=93.16 E-value=0.03 Score=52.18 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002222 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (951)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (951)
+.++.-+.|+.+|.|-|||+=|..++=|..|+. -=|.||+++||.+- |+.++.+ | +.+|
T Consensus 10 ~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md--------~~G~Vpl~~iasF~-r~k~lt~--------d----~~~i 68 (101)
T 2cqk_A 10 STEDLKECLKKQLEFCFSRENLSKDLYLISQMD--------SDQFIPIWTVANME-EIKKLTT--------D----PDLI 68 (101)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSC--------TTSCEEHHHHHHCH-HHHHHCC--------C----HHHH
T ss_pred CHHHHHHHHHHHHHhhcchhhhccCHHHHHhhh--------cCCCEEhHHHhCCh-HHHHHcC--------C----HHHH
Confidence 778888999999999999998888887777762 34899999999874 4554443 1 4678
Q ss_pred HHHhhccCCcEEeecCceeeeecCCCC
Q 002222 182 MRAATRLSEFVVTSEGQLSIWRKDPYP 208 (951)
Q Consensus 182 ~~a~~~~~~~~~~s~~~~~~~~~~p~~ 208 (951)
..|.+.++- |.++++.-.|+|..|-|
T Consensus 69 ~~al~~S~~-levsedg~kVRr~~~~~ 94 (101)
T 2cqk_A 69 LEVLRSSPM-VQVDEKGEKVRPSHKRC 94 (101)
T ss_dssp HHHHHHSSS-EEECSSSSEEEECCSCC
T ss_pred HHHHHhCCc-EEEcCCCCeeeeCCCCC
Confidence 888888765 89999999999998865
No 339
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=93.10 E-value=0.28 Score=44.92 Aligned_cols=90 Identities=27% Similarity=0.426 Sum_probs=64.3
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
+|-- |..|+.+.|.|...+ .+|+ .+++. ..|+|.+|.+.+.+-++..+..|.+|..+.|. +||..-+=
T Consensus 17 ~g~~~~~~gd~V~v~y~~~~-~dG~----~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~--ip~~~ayG 89 (113)
T 1yat_A 17 DGATFPKTGDLVTIHYTGTL-ENGQ----KFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT--IPGPYAYG 89 (113)
T ss_dssp CSSCCCCTTCEEEEEEEEEE-TTSC----EEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE--ECGGGTTT
T ss_pred CCcccCCCCCEEEEEEEEEE-CCCC----EEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEE--ECHHHCcC
Confidence 4555 999999999999997 3454 44443 57999999999999999999999999999887 55543322
Q ss_pred hhccCcccchhcccccccccceeeeecc
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLR 678 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~ 678 (951)
.... -..+|..+. +.|.|.++.
T Consensus 90 ~~~~-----~~~Ip~~~~-l~f~vel~~ 111 (113)
T 1yat_A 90 PRGF-----PGLIPPNST-LVFDVELLK 111 (113)
T ss_dssp TTCB-----TTTBCTTCC-EEEEEEEEE
T ss_pred CCCC-----CCCcCCCCe-EEEEEEEEE
Confidence 1110 112444454 777777654
No 340
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=92.74 E-value=0.096 Score=52.39 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCCChHhHHHH---hccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002222 14 MKLTPKAIIVQ---KFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 14 ~~~tpka~~~q---~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (951)
+...||.++++ |-+-...|++. +.| |. .+-.|.|.+.+-+..+..|+-+-||+|+|.||+.||+
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~~Y~~~------~~G------~~-h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~ 168 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTVNYEQC------ASG------VH-GPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYL 168 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEEEEEEE------EEC------SS-SSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcceEEec------CcC------CC-CCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHH
Confidence 34578888775 44444456542 222 11 1235666666666666678888899999999999999
Q ss_pred Hc
Q 002222 91 KL 92 (951)
Q Consensus 91 kl 92 (951)
+|
T Consensus 169 ~L 170 (179)
T 1qu6_A 169 QI 170 (179)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 341
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=92.73 E-value=0.33 Score=46.09 Aligned_cols=90 Identities=26% Similarity=0.454 Sum_probs=63.2
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
+|-- |..|+.+.|.|...+ .+|+ .+++. ..++|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 35 ~G~~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~--ip~~~aYG 107 (130)
T 2lgo_A 35 DGVTKPQAGKKVTVHYDGRF-PDGK----QFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT--IPYQLAYG 107 (130)
T ss_dssp CSSCCCCTTSEEEEEEEEEC-TTSC----EEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE--ECTTTSTT
T ss_pred CCCccCCCCCEEEEEEEEEE-CCCC----EEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE--ECcHHHCC
Confidence 4555 999999999999997 3444 44443 57999999999999999999999999999886 55543332
Q ss_pred hhccCcccchhcccccccccceeeeecc
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLR 678 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~ 678 (951)
.... . ..+|..+. +.|.|.++.
T Consensus 108 ~~~~---~--~~Ip~~~~-l~f~VeL~~ 129 (130)
T 2lgo_A 108 ERGY---P--PVIPPKAT-LVFEVELLA 129 (130)
T ss_dssp TTCC---S--TTSCSSCC-EEEEEEEEE
T ss_pred CCCC---C--CCcCCCCe-EEEEEEEEE
Confidence 1111 0 12344444 666666653
No 342
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=92.71 E-value=0.16 Score=53.15 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=46.7
Q ss_pred ChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCCC
Q 002222 17 TPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDP 96 (951)
Q Consensus 17 tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~~~ 96 (951)
||--.++|. ...-.|++.+... |.--| .|.|.+.+.+.. ..|.-+-||+|||.||+.||++|..-+
T Consensus 8 ~~l~~l~e~-~~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 8 NALMQLNEI-KPGLQYMLLSQTG-----------PVHAP-LFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp HHHHHHHHH-CSSCEEEEEEEES-----------CTTSC-EEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHhhc-CCCceEEEEeccC-----------CCCCC-eEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhcc
Confidence 344455554 3445787753221 22233 899999998865 489999999999999999999998654
No 343
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=92.48 E-value=0.32 Score=43.91 Aligned_cols=91 Identities=30% Similarity=0.461 Sum_probs=64.7
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
+|-- |..|+.+.|.|+..+. +|+ .+++. ..++|.+|.+.+.+-++..+..|.+|..+.|. +||..-+=
T Consensus 11 ~g~~~~~~gd~V~v~y~~~~~-dG~----~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~--ip~~~ayG 83 (107)
T 2ppn_A 11 DGRTFPKRGQTCVVHYTGMLE-DGK----KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT--ISPDYAYG 83 (107)
T ss_dssp CSSCCCCTTCEEEEEEEEEET-TSC----EEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEE--ECHHHccC
Confidence 3544 9999999999999985 554 44443 68999999999999999999999999999887 55543322
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
.... . ..+|..+. +.|.|.++.+
T Consensus 84 ~~~~---~--~~Ip~~~~-l~f~v~l~~v 106 (107)
T 2ppn_A 84 ATGH---P--GIIPPHAT-LVFDVELLKL 106 (107)
T ss_dssp TTCB---T--TTBCTTCC-EEEEEEEEEE
T ss_pred CCCC---C--CCcCCCCe-EEEEEEEEEe
Confidence 1110 0 12344444 7777776643
No 344
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=92.48 E-value=0.49 Score=45.13 Aligned_cols=111 Identities=24% Similarity=0.342 Sum_probs=72.7
Q ss_pred ccccccccCCCCceeeec-cCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhh
Q 002222 553 NSINTLNAIPEHGIYCLS-IGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVV 627 (951)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v 627 (951)
++-..........+.... .+| .|--|..|..+.|.|...+ .+|+ .+++. ..|+|.+|.|.+++-++..
T Consensus 17 ~~~~~~~~~~~~gl~~~~l~~G--~G~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~g~vi~G~eea 89 (133)
T 2y78_A 17 RGSHMTVVTTESGLKYEDLTEG--SGAEARAGQTVSVHYTGWL-TDGQ----KFDSSKDRNDPFAFVLGGGMVIKGWDEG 89 (133)
T ss_dssp GTTTTCCEECTTSCEEEEEECC--SSCBCCTTSEEEEEEEEEE-TTSC----EEEETTTTTCCEEEETTSSSSCHHHHHH
T ss_pred cccCCCcEECCCCEEEEEEEcC--CCCCCCCCCEEEEEEEEEE-CCCC----EEeccCcCCCCEEEEeCCCChhHHHHHH
Confidence 333333344444444333 345 3778999999999999998 3444 44443 5799999999999999999
Q ss_pred hhhccccccceecccCCchhhhhhhccCcccchhcccccccccceeeeecc
Q 002222 628 TAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLR 678 (951)
Q Consensus 628 ~~q~sv~q~~~~~~~l~~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~ 678 (951)
+..|.+|..+.|. +||..-+=..... ..+|-.+. +.|.|.++.
T Consensus 90 L~gmk~Ge~~~v~--ip~~~aYG~~~~~-----~~Ipp~~~-l~f~VeL~~ 132 (133)
T 2y78_A 90 VQGMKVGGVRRLT--IPPQLGYGARGAG-----GVIPPNAT-LVFEVELLD 132 (133)
T ss_dssp STTCBTTCEEEEE--ECGGGTTTTTCBT-----TTBCTTCC-EEEEEEEEE
T ss_pred HcCCCCCCEEEEE--ECcHHhCCCCCCC-----CCCCCCCe-EEEEEEEEE
Confidence 9999999999987 5554433211100 12334444 667666653
No 345
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=92.33 E-value=0.14 Score=55.02 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=71.4
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002222 691 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
.-|+.-....+..+.+.--..++.+|||+||+.|.++...++.. ....|.|.++.... . +.+ ..|
T Consensus 52 g~yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~-~-----~~P--------~~~ 116 (269)
T 2px2_A 52 GHPVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPG-H-----EEP--------MLM 116 (269)
T ss_dssp SCCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTT-S-----CCC--------CCC
T ss_pred CCcccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEcccc-c-----cCC--------Ccc
Confidence 34555555555666555323467899999999999999998872 12355666654431 0 000 000
Q ss_pred C-CCCccEEEEEc-cccccCCCCCCccEEEEccccccCc---hhHHHH--HHHHHHHccCCCE--EEEEecCC
Q 002222 771 C-TDVKSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHME---EDEASQ--FGNIVLSSFRPRI--LIVSTPNY 834 (951)
Q Consensus 771 r-~~~~nVtf~qG-Da~dLp~~d~sFDlVVcieVLEHL~---dD~l~~--L~eeL~RvLKPGv--LIISTPNs 834 (951)
. .+..-+.|.+| |+.+++ ...+|+|+|-..=. -. -|.... .++-+.++|+||. +++=+-..
T Consensus 117 ~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 117 QSYGWNIVTMKSGVDVFYKP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CSTTGGGEEEECSCCGGGSC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred cCCCceEEEeeccCCccCCC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 1 12223466668 998754 45799999954321 11 122111 2344558999984 66655553
No 346
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=92.17 E-value=0.58 Score=43.07 Aligned_cols=90 Identities=19% Similarity=0.349 Sum_probs=65.1
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhccc-----------cceEEEeccCccchhhhhhhhhccccccceecccCCch
Q 002222 578 IYPSNGCLSFISYSVSLVIEGETMKELLESR-----------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646 (951)
Q Consensus 578 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~ 646 (951)
..|..|+.+.|.|...|. +|+ ++++. ..|+|.+|.+.+++-++..+..|.+|..+.+. +||.
T Consensus 18 ~~p~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~v~--ip~~ 90 (119)
T 3kz7_A 18 NFPKKGDVVHCWYTGTLP-DGT----VFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE--IEPE 90 (119)
T ss_dssp CCCCTTCEEEEEEEEECT-TSC----EEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGG
T ss_pred CcCCCCCEEEEEEEEEEC-CCC----EEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEE--ECcH
Confidence 579999999999999983 443 44543 67999999999999999999999999999887 5655
Q ss_pred hhhhhhccCcccchhcccccccccceeeeeccc
Q 002222 647 ELILAAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 647 ~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
.-+=... ..-..+|-.+. +.|.|.++.+
T Consensus 91 ~aYG~~g----~~~~~Ip~~~~-l~f~veL~~i 118 (119)
T 3kz7_A 91 WAYGKKG----QPDAKIPPNTK-LIFEVELVDI 118 (119)
T ss_dssp GTTCTTC----BGGGTBCTTCC-EEEEEEEEEE
T ss_pred HhcCCCC----CCCCccCcCCe-EEEEEEEEEe
Confidence 4332211 11112444555 7777777653
No 347
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=92.07 E-value=0.34 Score=45.58 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=66.3
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGI-YPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
+|- .|..|+.+.|.|...+. +|+ ++++ ...|+|.+|.|.+++-++..+..|.+|..+.+. +||..-+=
T Consensus 30 ~G~~~p~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~--ip~~~aYG 102 (128)
T 3o5q_A 30 NGEETPMIGDKVYVHYKGKLS-NGK----KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL--CKPEYAYG 102 (128)
T ss_dssp SSSCCCCTTCEEEEEEEEEET-TSC----EEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCccCCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE--EChHHcCC
Confidence 354 79999999999999984 443 4444 356999999999999999999999999999887 56654442
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
..... ..+|-.+. +.|.|.++.+
T Consensus 103 ~~g~~-----~~Ip~~~~-l~f~vel~~i 125 (128)
T 3o5q_A 103 SAGSL-----PKIPSNAT-LFFEIELLDF 125 (128)
T ss_dssp TTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred CCCCC-----CCcCCCCE-EEEEEEEEEe
Confidence 22111 23445555 7777777654
No 348
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=91.59 E-value=0.4 Score=46.19 Aligned_cols=91 Identities=27% Similarity=0.392 Sum_probs=67.0
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGI-YPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
.|- .|..|+.|.|.|...|. +|+ ++++. ..|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 46 ~G~~~p~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~--ipp~~aYG 118 (144)
T 3o5e_A 46 NGEETPMIGDKVYVHYKGKLS-NGK----KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL--CKPEYAYG 118 (144)
T ss_dssp BSSCCCCTTCEEEEEEEEECT-TSC----EEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEE--ECGGGTTT
T ss_pred CCCccCCCCCEEEEEEEEEEC-CCC----EEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEE--EChHHCcC
Confidence 354 79999999999999984 443 44443 45999999999999999999999999999987 56654442
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
..... ..+|-.+. +.|.|.++.+
T Consensus 119 ~~g~~-----~~Ipp~~~-L~f~VeL~~i 141 (144)
T 3o5e_A 119 SAGSL-----PKIPSNAT-LFFEIELLDF 141 (144)
T ss_dssp TTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred CCCCC-----CCcCCCCe-EEEEEEEEEe
Confidence 22211 23455555 7888887754
No 349
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=91.41 E-value=0.036 Score=57.75 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=0.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002222 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (951)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (951)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+-
T Consensus 194 ~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~ 231 (242)
T 2a11_A 194 EFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp --------------------------------------
T ss_pred eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 89999999887666799999999999999999999974
No 350
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=90.85 E-value=0.044 Score=57.73 Aligned_cols=37 Identities=38% Similarity=0.418 Sum_probs=0.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+
T Consensus 210 ~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 246 (248)
T 3n3w_A 210 QFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 (248)
T ss_dssp -------------------------------------
T ss_pred eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 8999999988666678889999999999999999986
No 351
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=90.82 E-value=0.27 Score=51.73 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 15 ~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
.-||+-.+.|..+....|..++. ...| .|.+.+.+.+-.+.+|+=+-||.|||.||+.||++|+
T Consensus 199 ~k~~l~el~~~~~~~~~~~~~~~--------------~~~~-~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 199 PRSPVRELLEMEPETAKFSPAER--------------TYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp CCCHHHHHHHHCTTTEEECCCEE--------------CTTS-CEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCceeeeccc--------------cCCC-cEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 35788888887765333322210 1122 6888888888767778889999999999999999985
No 352
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.32 E-value=0.32 Score=46.33 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=74.2
Q ss_pred eeccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002222 568 CLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 568 ~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
..-.+|......|..|..+.|.|+..+ .+|+ .+++...|+|.+|.|.+++-++..+..|.+|..+.|. +||..
T Consensus 22 ~vl~~G~G~~~~~~~gd~V~v~Y~g~~-~dG~----~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~--ip~~~ 94 (135)
T 2d9f_A 22 KTLVPGPPGSSRPVKGQVVTVHLQTSL-ENGT----RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT--ADSKY 94 (135)
T ss_dssp EEEECCCSSCCCCCTTSEEEEEEEEEE-SSSC----EEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEE--ECHHH
T ss_pred EEEEcCCCCCccCCCCCEEEEEEEEEE-CCCC----EEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEE--EChhH
Confidence 334456433348999999999999997 3453 5677889999999999999999999999999998886 56543
Q ss_pred hhhhhccCcccchhcccccccccceeeeecccCCChh
Q 002222 648 LILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPE 684 (951)
Q Consensus 648 l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~ep~E 684 (951)
-+=... ... ..++-... +.|.|.++.+.++.+
T Consensus 95 aYG~~~-~~~---~~Ip~~~~-l~f~vel~~v~~~~~ 126 (135)
T 2d9f_A 95 CYGPQG-SRS---PYIPPHAA-LCLEVTLKTAVDRPD 126 (135)
T ss_dssp HTCTTC-CSS---SCCCTTCC-EEEEEEEEEEESSCS
T ss_pred ccCcCC-cCC---CccCCCCe-EEEEEEEEEeecCCc
Confidence 321111 010 12344445 888888887665443
No 353
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=90.04 E-value=0.6 Score=46.10 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=71.7
Q ss_pred eeeccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCch
Q 002222 567 YCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 646 (951)
Q Consensus 567 ~~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~ 646 (951)
+-.-.+|...+..|..|+.|.|.|...|. +|+ .++|...|+|.+|.|.+++-++..+..|.+|..+.|. +||.
T Consensus 47 ~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~-dG~----~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~--IP~~ 119 (157)
T 2jwx_A 47 KKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGT----RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT--ADSK 119 (157)
T ss_dssp EEEEECCSTTSCCCCTTEEEEEEEEEECT-TSC----EEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEE--ECGG
T ss_pred EEEEEccCCCccCCCCCCEEEEEEEEEEC-CCC----EeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE--ECch
Confidence 34445565445589999999999999973 443 5777889999999999999999999999999999887 4554
Q ss_pred hhhhhhccCcccchhcccccccccceeeeeccc
Q 002222 647 ELILAAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 647 ~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
.-+=.. +... ..++-.+. +.|.|.++.+
T Consensus 120 ~aYG~~-g~~~---~~IPp~st-LiF~VeL~~i 147 (157)
T 2jwx_A 120 YCYGPQ-GSRS---PYIPPHAA-LCLEVTLKTA 147 (157)
T ss_dssp GTTTTT-CCSS---SCCCTTCC-EEEEEEEEEE
T ss_pred hcCCcc-cccC---CCcCCCCe-EEEEEEEEEE
Confidence 332111 1010 12344444 7788887754
No 354
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=89.96 E-value=0.32 Score=46.27 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=63.3
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 651 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 651 (951)
+|--|..|+.+.|.|+..|..+|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=.
T Consensus 37 ~g~~~~~gd~V~v~Y~g~l~~~G~----~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~--ip~~~aYG~ 110 (134)
T 3b7x_A 37 AGDLVAPDASVLVKYSGYLEHMDR----PFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFL--FKPNYAYGT 110 (134)
T ss_dssp EEEECCTTCEEEEEEEEECTTCSS----CSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEEE--ECGGGTTTT
T ss_pred CCCCCCCCCEEEEEEEEEECCCCe----EEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEEEE--ECHHHCcCC
Confidence 467788999999999999865554 3444 356999999999999999999999999999886 565432211
Q ss_pred hccCcccchhcccccccccceeeeecccC
Q 002222 652 AADDSARTFSLLSSRACCLEYHITLLRVT 680 (951)
Q Consensus 652 a~~~~~~DiSlL~~d~~~LEyyI~LL~v~ 680 (951)
... . ..+|..+. +.|.|.++.+.
T Consensus 111 ~~~---~--~~Ip~~~~-l~f~VeL~~i~ 133 (134)
T 3b7x_A 111 LGC---P--PLIPPNTT-VLFEIELLDFL 133 (134)
T ss_dssp TCB---T--TTBCTTCC-EEEEEEEEEEC
T ss_pred CCC---C--CCcCcCCe-EEEEEEEEEEe
Confidence 110 0 12445555 78888877653
No 355
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=89.59 E-value=0.21 Score=54.54 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=52.9
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC--
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-- 790 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-- 790 (951)
..+|+|+-||.|.+...+.+.+.....|+++|+++.+++..+.+.. +..++.+|+.++...
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----------------~~~~~~~Di~~~~~~~~ 64 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------------HTQLLAKTIEGITLEEF 64 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECSCGGGCCHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----------------ccccccCCHHHccHhHc
Confidence 3589999999999999888766212579999999999998876532 234677888876532
Q ss_pred -CCCccEEEEc
Q 002222 791 -LHGFDIGTCL 800 (951)
Q Consensus 791 -d~sFDlVVci 800 (951)
...+|+|+..
T Consensus 65 ~~~~~D~l~~g 75 (343)
T 1g55_A 65 DRLSFDMILMS 75 (343)
T ss_dssp HHHCCSEEEEC
T ss_pred CcCCcCEEEEc
Confidence 1268999874
No 356
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=88.67 E-value=0.67 Score=46.36 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCccC--CCCceeEEEEEEEEeec-ccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhh
Q 002222 576 SGIYP--SNGCLSFISYSVSLVIE-GETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQEL 648 (951)
Q Consensus 576 ~~~~p--~~gs~~~i~y~~~l~~~-~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l 648 (951)
+|-.| ..|+.|.+-|.-.|..+ |+----=.+.+.-|+|.+|.|-|+.-++..+..|.+|..++|. .||.-.
T Consensus 21 ~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~--ipp~la 94 (165)
T 2lkn_A 21 RGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFL--CDIKHV 94 (165)
T ss_dssp SSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEEEE--CCHHHH
T ss_pred cCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEEEE--ECHHHh
Confidence 46555 47999999999999764 4311111122456999999999999999999999999999997 776543
No 357
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=88.37 E-value=1.1 Score=45.87 Aligned_cols=90 Identities=27% Similarity=0.380 Sum_probs=65.8
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 651 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 651 (951)
+|.-|..|+.+.|.|+..+ .+|+ .+++. ..|+|.+|.|.+.+-++..+..|.+|..+.|. +||..-+=.
T Consensus 115 ~G~~~~~gd~V~v~Y~g~l-~dG~----~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~--Ipp~~aYG~ 187 (209)
T 3uf8_A 115 SGAEARAGQTVSVHYTGWL-TDGQ----KFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT--IPPQLGYGA 187 (209)
T ss_dssp CSCBCCTTCEEEEEEEEEE-TTSC----EEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE--ECGGGTTTT
T ss_pred CCCcCCCCCEEEEEEEEEE-CCCC----EEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE--ECcHHhCCC
Confidence 6777999999999999998 3443 44443 45999999999999999999999999998887 566543322
Q ss_pred hccCcccchhcccccccccceeeeecc
Q 002222 652 AADDSARTFSLLSSRACCLEYHITLLR 678 (951)
Q Consensus 652 a~~~~~~DiSlL~~d~~~LEyyI~LL~ 678 (951)
... -..+|..+. +.|.|.++.
T Consensus 188 ~g~-----~~~IP~~s~-LvF~VeL~~ 208 (209)
T 3uf8_A 188 RGA-----AGVIPPNAT-LVFEVELLD 208 (209)
T ss_dssp TCB-----TTTBCTTCC-EEEEEEEEE
T ss_pred CCC-----CCCcCCCCe-EEEEEEEEE
Confidence 211 112455555 777777654
No 358
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=88.23 E-value=1.5 Score=48.25 Aligned_cols=118 Identities=12% Similarity=0.168 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHhhc-----CCCCEEEEEcC------ccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcc
Q 002222 696 LSKQRVEYALQHIKE-----SCATTLVDFGC------GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 764 (951)
Q Consensus 696 L~~QR~e~VldlL~~-----~k~krVLDIGC------GeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~ 764 (951)
..-..|..+.+.++. ..+.+|||+|+ ..|.+. +.+.++....|+++|+.+-.
T Consensus 88 ~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~--------------- 150 (344)
T 3r24_A 88 MNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV--------------- 150 (344)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB---------------
T ss_pred eeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc---------------
Confidence 455566666666643 35789999996 667743 22233211599999986521
Q ss_pred cccCCCCCCCccEEEEEccccccCCCCCCccEEEEccc---cccCchh------HHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 765 LDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV---IEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 765 ~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieV---LEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.... .+++||...... ...||+|+|-.. --|...+ -.....+-+.+.|+|| .+++=+-..
T Consensus 151 --------sda~-~~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 151 --------SDAD-STLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp --------CSSS-EEEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred --------cCCC-eEEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 0112 458999766443 478999998321 1112211 1234445567899999 666654444
Q ss_pred chhHHH
Q 002222 835 EYNAIL 840 (951)
Q Consensus 835 EfN~lf 840 (951)
+....+
T Consensus 221 sg~~~L 226 (344)
T 3r24_A 221 SWNADL 226 (344)
T ss_dssp SCCHHH
T ss_pred CCHHHH
Confidence 434433
No 359
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=87.81 E-value=0.71 Score=51.31 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=52.5
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC----
Q 002222 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---- 789 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~---- 789 (951)
.+++|+-||.|.+...+.+.| ...|.++|+++..++..+.+. ++..++.+|+.++..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~-----------------~~~~~~~~DI~~~~~~~~~ 63 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF-----------------PRSLHVQEDVSLLNAEIIK 63 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC-----------------TTSEEECCCGGGCCHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC-----------------CCCceEecChhhcCHHHHH
Confidence 589999999999999988877 256779999999988776542 245677889887643
Q ss_pred ----CCCCccEEEEc
Q 002222 790 ----RLHGFDIGTCL 800 (951)
Q Consensus 790 ----~d~sFDlVVci 800 (951)
....+|+|+..
T Consensus 64 ~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 64 GFFKNDMPIDGIIGG 78 (376)
T ss_dssp HHHCSCCCCCEEEEC
T ss_pred hhcccCCCeeEEEec
Confidence 23579999863
No 360
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=87.79 E-value=0.73 Score=43.84 Aligned_cols=93 Identities=24% Similarity=0.380 Sum_probs=67.4
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGI-YPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
+|. .|..|+.+.|.|+.++ .+|+ .+++ ...|+|.+|.+.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 25 ~g~~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~--ip~~~aYG 97 (135)
T 1r9h_A 25 QGVVKPTTGTTVKVHYVGTL-ENGT----KFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT--IRSDYGYG 97 (135)
T ss_dssp BSSCCCCTTCEEEEEEEEEE-TTSC----EEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEE-CCCC----EEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEE--EChHHcCC
Confidence 454 7999999999999997 3444 4444 368999999999999999999999999999887 45544332
Q ss_pred hhccCcccchhcccccccccceeeeecccCC
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRVTE 681 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e 681 (951)
.... -..+|.... +.|.|.++.+..
T Consensus 98 ~~g~-----~~~Ip~~~~-l~f~v~l~~i~~ 122 (135)
T 1r9h_A 98 DAGS-----PPKIPGGAT-LIFEVELFEWSA 122 (135)
T ss_dssp TTCB-----TTTBCTTCC-EEEEEEEEEEEC
T ss_pred CCCC-----CCCcCcCCc-EEEEEEEEEeec
Confidence 2111 012445555 788888876544
No 361
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=86.83 E-value=0.79 Score=42.42 Aligned_cols=60 Identities=25% Similarity=0.430 Sum_probs=41.1
Q ss_pred ceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc----eeeeccccccchHHHHHHHHH---HHHcCCCCCCCCC
Q 002222 29 NAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF----SVVSETFKKKKDAEQSAAEKA---LEKLGIDPSPNVP 101 (951)
Q Consensus 29 ~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~----~v~~~~~~~kkdaeq~aa~~a---l~klg~~~~~~~~ 101 (951)
+-.|+++++... + -.| |+|.||.- ++++...+.||.|.|+||-.| |.|+|-=...-.|
T Consensus 26 ~P~~~~~~~~~~-------------~-~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G~Ldd~LlP 90 (102)
T 2kou_A 26 KPEFQFKPVDEF-------------G-GTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLP 90 (102)
T ss_dssp SCEEEEEECCGG-------------G-CEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHCSCTTTSCC
T ss_pred cceEEEeEeecC-------------C-CeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCCCCccccCC
Confidence 357887776431 2 267 99999993 455577899999999999877 5556753333345
Q ss_pred Ch
Q 002222 102 SA 103 (951)
Q Consensus 102 ~~ 103 (951)
+.
T Consensus 91 ~~ 92 (102)
T 2kou_A 91 DS 92 (102)
T ss_dssp HH
T ss_pred CC
Confidence 33
No 362
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=86.77 E-value=0.13 Score=56.95 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCC
Q 002222 53 KGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGID 95 (951)
Q Consensus 53 ~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~~ 95 (951)
.|| |.+.+.+.+-.+-+|.=+-||+|||.||+.||++|+.-
T Consensus 281 ~Gp--F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 281 MPP--FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp -------------------------------------------
T ss_pred cCC--EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 356 77777777766666888999999999999999999863
No 363
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=86.59 E-value=1 Score=41.96 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=51.3
Q ss_pred cCCCCceeEEEEEEEEeecccchhhhhcc--ccceEEEeccCccchhhhhhhhhccccccceecccCCc
Q 002222 579 YPSNGCLSFISYSVSLVIEGETMKELLES--REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPP 645 (951)
Q Consensus 579 ~p~~gs~~~i~y~~~l~~~~~~~~~~~e~--~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~ 645 (951)
-|..|..+.|.|...+ +|+ .+++ ...|+|.+|.|.+++-++..+..|.+|....+.-..|+
T Consensus 29 ~~~~gD~V~v~Y~g~~--dG~----~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~ 91 (113)
T 1hxv_A 29 KLANGDIAIIDFTGIV--DNK----KLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS 91 (113)
T ss_dssp CCCSSEEEEEEEEEEE--TTE----ECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCT
T ss_pred CCCCCCEEEEEEEEEE--CCE----EcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCch
Confidence 3789999999999997 665 3444 36899999999999999999999999999998854343
No 364
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=86.31 E-value=8.9 Score=34.49 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=58.3
Q ss_pred CCEEEEEcCcc-chh-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002222 713 ATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 713 ~krVLDIGCGe-G~l-l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.++|+=+|+|. |.. +..|.+.+ .+|+++|.+++.++..++.. .+.++.+|..+..
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~d~~~~~~l 62 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAEI------------------DALVINGDCTKIKTL 62 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC------------------SSEEEESCTTSHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHhc------------------CcEEEEcCCCCHHHH
Confidence 46899999864 322 34455555 68999999988766554321 2445666664322
Q ss_pred --CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002222 789 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 840 (951)
Q Consensus 789 --~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf 840 (951)
.....+|+|+..- +.+........+.+.+.++.+++.+-+.++...+
T Consensus 63 ~~~~~~~~d~vi~~~-----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l 111 (140)
T 1lss_A 63 EDAGIEDADMYIAVT-----GKEEVNLMSSLLAKSYGINKTIARISEIEYKDVF 111 (140)
T ss_dssp HHTTTTTCSEEEECC-----SCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHH
T ss_pred HHcCcccCCEEEEee-----CCchHHHHHHHHHHHcCCCEEEEEecCHhHHHHH
Confidence 1235789887652 2222222223356667777666666555554433
No 365
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=86.25 E-value=0.44 Score=49.82 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=28.8
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002222 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
.|.|.+. -.+..|+-+-||+|||.||+.||++|.
T Consensus 164 ~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~ 197 (232)
T 2yt4_A 164 EYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLH 197 (232)
T ss_dssp EEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 6777776 345568899999999999999999996
No 366
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.18 E-value=0.83 Score=48.65 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccC-ccchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTG-AVIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 654 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~-a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 654 (951)
.|-.|..|+.|.|.|+..+..+|+.-.--......|+|.+|.| .+++-++..+..|.+|..+.|. +||..-+-....
T Consensus 60 ~g~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~--i~~~~~yg~~~~ 137 (338)
T 2if4_A 60 HGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH--VGWELAYGKEGN 137 (338)
T ss_dssp BSCCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE--ECGGGSSCSSCC
T ss_pred CCCCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE--ECHHHhcCCCCC
Confidence 5678999999999999998765642111112346899999999 8999999999999999988876 555432221111
Q ss_pred CcccchhcccccccccceeeeecccCCCh
Q 002222 655 DSARTFSLLSSRACCLEYHITLLRVTEPP 683 (951)
Q Consensus 655 ~~~~DiSlL~~d~~~LEyyI~LL~v~ep~ 683 (951)
. ....+|.... +.|.+.++.+..+.
T Consensus 138 ~---~~~~ip~~~~-l~f~v~L~~~~~~~ 162 (338)
T 2if4_A 138 F---SFPNVPPMAD-LLYEVEVIGFDETK 162 (338)
T ss_dssp C---SSSCCCTTCC-EEEEEEEEEEECCC
T ss_pred C---CCCCCCCCCc-EEEEEEEEEecCCc
Confidence 0 0122344444 77888887655533
No 367
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=85.09 E-value=1.3 Score=49.40 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=40.0
Q ss_pred CCCCEEEEEcCccchhHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHH
Q 002222 711 SCATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LA-k~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
.++..++|+|++.|.++..++ +.+++..+|+++|+++...+..++++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~ 273 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 273 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 467899999999999999887 444333799999999999999887765
No 368
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=84.70 E-value=1.7 Score=47.25 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~- 790 (951)
...+++|+.||.|.+...+.+.| ...|+++|+++..++..+.+... . . .+|+.++...
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~--------------~--~---~~Di~~~~~~~ 68 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE--------------K--P---EGDITQVNEKT 68 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC--------------C--C---BSCGGGSCGGG
T ss_pred CCCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCC--------------C--C---cCCHHHcCHhh
Confidence 35789999999999999998877 36688999999999888765420 0 1 5788776532
Q ss_pred CCCccEEEEc
Q 002222 791 LHGFDIGTCL 800 (951)
Q Consensus 791 d~sFDlVVci 800 (951)
...+|+|+..
T Consensus 69 ~~~~D~l~~g 78 (327)
T 2c7p_A 69 IPDHDILCAG 78 (327)
T ss_dssp SCCCSEEEEE
T ss_pred CCCCCEEEEC
Confidence 3468999873
No 369
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=84.38 E-value=0.98 Score=44.66 Aligned_cols=58 Identities=28% Similarity=0.532 Sum_probs=48.7
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccc-----------------cceEEEeccCccchhhhhhhhhccccccceecccC
Q 002222 581 SNGCLSFISYSVSLVIEGETMKELLESR-----------------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKEL 643 (951)
Q Consensus 581 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l 643 (951)
..|+.+.|.|+..| +|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.+. +
T Consensus 3 ~~Gd~V~v~Y~g~l--dG~----vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~--I 74 (157)
T 3pr9_A 3 EKGKMVKISYDGYV--DGK----LFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVV--L 74 (157)
T ss_dssp CTTCEEEEEEEEEE--TTE----EEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEE--E
T ss_pred CCCCEEEEEEEEEE--CCE----EEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEE--E
Confidence 57999999999999 664 34432 46999999999999999999999999998877 5
Q ss_pred Cch
Q 002222 644 PPQ 646 (951)
Q Consensus 644 ~~~ 646 (951)
||.
T Consensus 75 pp~ 77 (157)
T 3pr9_A 75 PPE 77 (157)
T ss_dssp CGG
T ss_pred CcH
Confidence 444
No 370
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=83.46 E-value=1.5 Score=41.29 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=52.4
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhh------ccccccceecccCCc
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQ------MSVGQSACFCKELPP 645 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q------~sv~q~~~~~~~l~~ 645 (951)
+|--|..|..+.|.|...+. +|+ .+++ ...|+|.+|.+.+++-++..+.. |.+|..+.+. +||
T Consensus 23 ~G~~~~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~--ip~ 95 (129)
T 1u79_A 23 YGPEAVKGQLIKAHYVGKLE-NGK----VFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLR--IPP 95 (129)
T ss_dssp SSCBCCTTCEEEEEEEEECT-TSC----EEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEE--ECG
T ss_pred CCCCCCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCCEEEEE--ECh
Confidence 56779999999999999873 444 3443 36799999999999999988765 9999999886 555
Q ss_pred hhh
Q 002222 646 QEL 648 (951)
Q Consensus 646 ~~l 648 (951)
..-
T Consensus 96 ~~a 98 (129)
T 1u79_A 96 ELA 98 (129)
T ss_dssp GGT
T ss_pred HHc
Confidence 443
No 371
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=83.17 E-value=5 Score=37.41 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=62.3
Q ss_pred CEEEEEcCcc-chh-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--
Q 002222 714 TTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 789 (951)
Q Consensus 714 krVLDIGCGe-G~l-l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-- 789 (951)
.+|+=+|||. |.. +..|.+.+ .+|+++|.+++.++.+++. .+.++.||..+...
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g---~~v~vid~~~~~~~~~~~~-------------------g~~~i~gd~~~~~~l~ 65 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD---IPLVVIETSRTRVDELRER-------------------GVRAVLGNAANEEIMQ 65 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHT-------------------TCEEEESCTTSHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHc-------------------CCCEEECCCCCHHHHH
Confidence 5799999985 443 34555555 7899999999988877531 45678888866432
Q ss_pred --CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002222 790 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 841 (951)
Q Consensus 790 --~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~ 841 (951)
....+|+|++.- +++....+.-...+.+.|+ .++.-..+.++...+.
T Consensus 66 ~a~i~~ad~vi~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~ 115 (140)
T 3fwz_A 66 LAHLECAKWLILTI-----PNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYIT 115 (140)
T ss_dssp HTTGGGCSEEEECC-----SCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHH
T ss_pred hcCcccCCEEEEEC-----CChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 234688877542 2233222222356677788 6555555554444444
No 372
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=81.52 E-value=2.8 Score=45.92 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=69.3
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhccCcc
Q 002222 578 IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSA 657 (951)
Q Consensus 578 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~~~~ 657 (951)
..|..|..+.|.|+..|. +|. ++++...++|.+|-|.++.-++..+..|.+|..+.+. ++|+--+=.......
T Consensus 141 ~~p~~g~~V~v~y~g~l~-dgt----~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~--v~p~~~yg~~G~~~~ 213 (356)
T 3jxv_A 141 ENPKDPDEVFVKYEARLE-DGT----VVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAA 213 (356)
T ss_dssp CCCCTTCEEEEEEEEEET-TSC----EEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEE--ECGGGTTTTTCBCCC
T ss_pred CCCCCCCEEEEEEEEEEC-CCC----EEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEE--EChHhhcCCCCCCcc
Confidence 689999999999999996 332 4455568999999999999999999999999998887 455533332222222
Q ss_pred cchhcccccccccceeeeeccc
Q 002222 658 RTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 658 ~DiSlL~~d~~~LEyyI~LL~v 679 (951)
.....+|..+. +.|.+.++..
T Consensus 214 ~~~~~ip~~~~-l~~~vel~~~ 234 (356)
T 3jxv_A 214 GEGGAVPPNAS-LVIDLELVSW 234 (356)
T ss_dssp C--CCBCTTCC-EEEEEEEEEE
T ss_pred cccccCCCCcE-EEEEEEEEEE
Confidence 22335666666 8888888765
No 373
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=81.41 E-value=2.9 Score=44.65 Aligned_cols=93 Identities=25% Similarity=0.481 Sum_probs=66.8
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGI-YPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
.|- .|..|..|.|.|+..+ .+|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 62 ~G~~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~--ipp~~aYG 134 (280)
T 1q1c_A 62 TGTEMPMIGDRVFVHYTGWL-LDGT----KFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT--CKPEYAYG 134 (280)
T ss_dssp SSSCCCCTTCEEEEEEEEEE-TTSC----EEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEE-CCCC----EEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEE--ECcHHhCC
Confidence 344 4999999999999997 3454 4444 368999999999999999999999999999886 56654333
Q ss_pred hhccCcccchhcccccccccceeeeecccCC
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRVTE 681 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e 681 (951)
.... . ..++..+. +.|.|.++.+..
T Consensus 135 ~~g~--~---~~Ip~~~~-lvf~Vel~~i~~ 159 (280)
T 1q1c_A 135 SAGS--P---PKIPPNAT-LVFEVELFEFKG 159 (280)
T ss_dssp TTCB--T---TTBCTTCC-EEEEEEEEEEEC
T ss_pred CcCc--c---CCCCCCCc-EEEEEEeeeecc
Confidence 2211 0 12344444 778888876543
No 374
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=81.32 E-value=0.52 Score=63.90 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=49.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~----~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
+..+||+||.|+|..+..+.+... ...+++-.|+|....+.|++++... .+..-.-|..+.
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------------di~~~~~d~~~~ 1304 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------------HVTQGQWDPANP 1304 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------------TEEEECCCSSCC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------------cccccccccccc
Confidence 457999999999986654332211 1247889999998888887665321 222211122221
Q ss_pred -CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002222 788 -DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 788 -p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
++...+||+|++..++|-.+ +....+ .++.++|||| .+++..
T Consensus 1305 ~~~~~~~ydlvia~~vl~~t~-~~~~~l-~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1305 APGSLGKADLLVCNCALATLG-DPAVAV-GNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CC-----CCEEEEECC----------------------CCEEEEEE
T ss_pred ccCCCCceeEEEEcccccccc-cHHHHH-HHHHHhcCCCcEEEEEe
Confidence 22456799999999996544 333444 5699999998 555543
No 375
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=81.19 E-value=13 Score=37.69 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=59.9
Q ss_pred CEEEEEcCccchhHHHH----hcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 714 TTLVDFGCGSGSLLDSL----LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 714 krVLDIGCGeG~ll~~L----Ak~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
++||=.|+ |.++..+ ++.+ .+|++++-++........ ..++++.+|+.++.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~-------------------~~~~~~~~D~~d~~- 60 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQG---WRIIGTSRNPDQMEAIRA-------------------SGAEPLLWPGEEPS- 60 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGT---CEEEEEESCGGGHHHHHH-------------------TTEEEEESSSSCCC-
T ss_pred CcEEEECC--cHHHHHHHHHHHHCC---CEEEEEEcChhhhhhHhh-------------------CCCeEEEecccccc-
Confidence 68999995 7766544 4555 799999988764433221 26899999999876
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHc-cCCC-EEEEEec
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~Rv-LKPG-vLIISTP 832 (951)
..++|+|+..-............+.+.+.+. -+.+ .+++++.
T Consensus 61 -~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~ 104 (286)
T 3ius_A 61 -LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTT 104 (286)
T ss_dssp -CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred -cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecc
Confidence 6789999987665444433334555434332 2334 5566664
No 376
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=80.24 E-value=2.8 Score=45.81 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=50.6
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceE-EEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYPTALEKI-VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 790 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qV-VGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~- 790 (951)
..+++|+-||.|.+...+.+.+-....| .++|+++..++..+.+.. .. ++.+|+.++...
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----------------~~-~~~~DI~~~~~~~ 71 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----------------EE-VQVKNLDSISIKQ 71 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----------------CC-CBCCCTTTCCHHH
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----------------CC-cccCChhhcCHHH
Confidence 4589999999999999888776112456 799999999988876542 11 456788776532
Q ss_pred --CCCccEEEEc
Q 002222 791 --LHGFDIGTCL 800 (951)
Q Consensus 791 --d~sFDlVVci 800 (951)
...+|+++..
T Consensus 72 i~~~~~Dil~gg 83 (327)
T 3qv2_A 72 IESLNCNTWFMS 83 (327)
T ss_dssp HHHTCCCEEEEC
T ss_pred hccCCCCEEEec
Confidence 2368999864
No 377
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=80.02 E-value=2.1 Score=41.78 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=51.1
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002222 580 PSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
+..|+.+.|.|+..+..+|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.|. +||..
T Consensus 7 i~~gd~V~v~Y~g~~~~dG~----~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~--ipp~~ 71 (151)
T 2kr7_A 7 ESIKQAALIEYEVREQGSSI----VLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVV--IAPEE 71 (151)
T ss_dssp TTSCCEEEEEEEEEESSCSC----EEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEE--ECGGG
T ss_pred CCCCCEEEEEEEEEECCCCC----EEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEE--EecHH
Confidence 47899999999999653443 55554 47999999999999999999999999998887 55554
No 378
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=79.96 E-value=1.7 Score=44.50 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002222 580 PSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
+..|+.|.|.|++.+ .+|+ +++|. ..++|.+|.+.+++-++..+..|.+|..+.|. +||..
T Consensus 3 i~~gd~V~v~Y~g~~-~dG~----~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~--Ippe~ 66 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRT-EDGV----LVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAND 66 (196)
T ss_dssp CCSSCEEEEEEEEEE-TTTE----EEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEE--CSTTT
T ss_pred CCCCCEEEEEEEEEE-CCCC----EEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEE--eCcHH
Confidence 478999999999996 3443 56554 56999999999999999999999999998887 65554
No 379
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=79.82 E-value=1.9 Score=46.61 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=40.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
.++..|||.-||+|..+....+.+ .+.+|+|+++..++.|++|+.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 567899999999999999888887 799999999999999988764
No 380
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=79.62 E-value=1.9 Score=43.19 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=50.8
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002222 580 PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
+..|+.+.|.|+..+. +|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.|. +||..
T Consensus 25 i~~gd~V~v~Y~g~l~-dG~----vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~--Ipp~~ 89 (169)
T 4dt4_A 25 VQSNSAVLVHFTLKLD-DGT----TAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS--LEPDA 89 (169)
T ss_dssp CCTTCEEEEEEEEEET-TSC----EEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGGG
T ss_pred CCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEE--EChHH
Confidence 4788999999999884 453 56554 67999999999999999999999999998887 55544
No 381
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=79.26 E-value=12 Score=34.47 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=60.3
Q ss_pred CCEEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002222 713 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 713 ~krVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
.++|+=+|||. |. ++..|.+.+ .+|+++|.+++.++.+++. .+.++.+|..+...
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g---~~V~~id~~~~~~~~~~~~-------------------~~~~~~gd~~~~~~l 63 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG---KKVLAVDKSKEKIELLEDE-------------------GFDAVIADPTDESFY 63 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHT-------------------TCEEEECCTTCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHC-------------------CCcEEECCCCCHHHH
Confidence 45799999974 32 334555666 7899999999887766431 35677888866432
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002222 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 841 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~ 841 (951)
....+|+|+..-- ++....+.-...+.+....++....+.++...+.
T Consensus 64 ~~~~~~~~d~vi~~~~-----~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~ 113 (141)
T 3llv_A 64 RSLDLEGVSAVLITGS-----DDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFE 113 (141)
T ss_dssp HHSCCTTCSEEEECCS-----CHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHH
T ss_pred HhCCcccCCEEEEecC-----CHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHH
Confidence 2356898876332 2332232223445555335555555555544444
No 382
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=79.16 E-value=4.6 Score=46.07 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=58.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002222 703 YALQHIKESCATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LA----k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
++.+.+......+|+|+|.|.|.++.-++ +......+++-||+|+.+.+.-++++.... .....+|.
T Consensus 128 ~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~---------~~~~~~v~ 198 (432)
T 4f3n_A 128 PVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQA---------PGLAARVR 198 (432)
T ss_dssp HHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHS---------TTTGGGEE
T ss_pred HHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccc---------cccCCCce
Confidence 34444444446799999999999886554 322112589999999998887777765321 01123677
Q ss_pred EEEccccccCCCCCCcc-EEEEccccccCc
Q 002222 779 LFDGSITVFDSRLHGFD-IGTCLEVIEHME 807 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFD-lVVcieVLEHL~ 807 (951)
|.. + +| ..|. +|+++|++.-+|
T Consensus 199 W~~-~---lP---~~~~g~iiANE~fDAlP 221 (432)
T 4f3n_A 199 WLD-A---LP---ERFEGVVVGNEVLDAMP 221 (432)
T ss_dssp EES-S---CC---SCEEEEEEEESCGGGSC
T ss_pred ecc-c---CC---ccCceEEEeehhhccCc
Confidence 754 2 33 2355 888999998888
No 383
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=79.13 E-value=1.7 Score=39.80 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred ccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccC
Q 002222 388 NWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSR 467 (951)
Q Consensus 388 ~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~ 467 (951)
+|.+--|..+|-.+|..+.+..|.|.... ..| .. ..|.|+|.|-.+.
T Consensus 12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~----------------------------~~G--p~--~~F~~~V~v~g~~- 58 (98)
T 1x47_A 12 NPNGKSEVCILHEYMQRVLKVRPVYNFFE----------------------------CEN--PS--EPFGASVTIDGVT- 58 (98)
T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEE----------------------------CSS--SS--CCEEEEEEETTEE-
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEE----------------------------eEC--CC--CcEEEEEEECCEE-
Confidence 34566799999999999999999998750 011 11 5599999884321
Q ss_pred CcccccCchhhhhhhhhhHhhhhhHHHHHHHhhhCC
Q 002222 468 DPILECSPKEFYKKQNESIENASLKVLSWLNAYFKD 503 (951)
Q Consensus 468 ~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~ 503 (951)
+ ....-+..-+|=|+||..+|.+|..-|++
T Consensus 59 -----~-~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 88 (98)
T 1x47_A 59 -----Y-GSGTASSKKLAKNKAARATLEILIPDFVK 88 (98)
T ss_dssp -----E-EEEEESSHHHHHHHHHHHHHHHHCSSSSC
T ss_pred -----E-EEeeeCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 12334667799999999999999765555
No 384
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=79.07 E-value=1.8 Score=42.71 Aligned_cols=58 Identities=22% Similarity=0.418 Sum_probs=49.9
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002222 581 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 581 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
..|+.+.|.|+.. .+|+ +++|.. ++|.+|.|.+++-++..+..|.+|..+.|. +||.+
T Consensus 4 ~~gd~V~v~Y~g~--~dG~----~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~--ipp~~ 61 (158)
T 3cgm_A 4 GQDKVVTIRYTLQ--VEGE----VLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAH--VPAEK 61 (158)
T ss_dssp CTTEEEEEEEEEE--ETTE----EEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEE--ECGGG
T ss_pred CCCCEEEEEEEEE--ECCE----EEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEE--ECcHH
Confidence 6899999999998 5553 566666 999999999999999999999999998887 55554
No 385
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=78.94 E-value=2 Score=45.18 Aligned_cols=59 Identities=27% Similarity=0.530 Sum_probs=49.4
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccc-----------------cceEEEeccCccchhhhhhhhhccccccceecccC
Q 002222 581 SNGCLSFISYSVSLVIEGETMKELLESR-----------------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKEL 643 (951)
Q Consensus 581 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l 643 (951)
..|+.+.|.|+..| +|+ +++|. ..++|.+|.|.+++-++..+..|.+|....+. +
T Consensus 3 ~~Gd~V~v~Y~g~l--dG~----vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~--I 74 (231)
T 3prb_A 3 EKGKMVKISYDGYV--DGK----LFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVV--L 74 (231)
T ss_dssp CTTCEEEEEEEEEE--TTE----EEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEE--E
T ss_pred CCCCEEEEEEEEEE--CCE----EEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEE--e
Confidence 57999999999999 664 34433 45999999999999999999999999998877 5
Q ss_pred Cchh
Q 002222 644 PPQE 647 (951)
Q Consensus 644 ~~~~ 647 (951)
||..
T Consensus 75 ppe~ 78 (231)
T 3prb_A 75 PPEK 78 (231)
T ss_dssp CGGG
T ss_pred CcHH
Confidence 5544
No 386
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=78.72 E-value=1.6 Score=48.48 Aligned_cols=91 Identities=27% Similarity=0.387 Sum_probs=59.0
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGIY-PSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
.|.- |..|..|.|.|+..+ .+|+ .++| ...|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 42 ~g~~~~~~gd~v~v~y~~~~-~~g~----~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~--i~~~~~yg 114 (457)
T 1kt0_A 42 NGEETPMIGDKVYVHYKGKL-SNGK----KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLL--CKPEYAYG 114 (457)
T ss_dssp ----CCCBTCEEEEEEEEEC----------CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCCCCCCCCEEEEEEEEEE-CCCC----EEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEE--EChHHhcc
Confidence 3544 999999999999998 4454 4544 357999999999999999999999999999887 56554332
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
..... ..++.... +.+.|.++.+
T Consensus 115 ~~g~~-----~~i~~~~~-l~~~v~l~~~ 137 (457)
T 1kt0_A 115 SAGSL-----PKIPSNAT-LFFEIELLDF 137 (457)
T ss_dssp TTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred ccCCC-----CCCCCCCc-EEEEEeecee
Confidence 21110 12333444 6666666643
No 387
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=78.05 E-value=1.4 Score=42.92 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=49.7
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc-----------------cceEEEeccCccchhhhhhhhhccccccceeccc
Q 002222 580 PSNGCLSFISYSVSLVIEGETMKELLESR-----------------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKE 642 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~ 642 (951)
+..|+.+.|.|+..+ .+|+ +++|. ..++|.+|.|.+++-++..+..|.+|....+.
T Consensus 2 i~~gd~V~v~Y~g~~-~dG~----~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~-- 74 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKL-ESGD----VFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVK-- 74 (151)
T ss_dssp CCTTCEEEECCEECC-TTSC----CCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEE--
T ss_pred CCCCCEEEEEEEEEE-CCCC----EEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEE--
Confidence 468999999999997 3443 34433 46899999999999999999999999998887
Q ss_pred CCchh
Q 002222 643 LPPQE 647 (951)
Q Consensus 643 l~~~~ 647 (951)
+||..
T Consensus 75 ipp~~ 79 (151)
T 1ix5_A 75 IPAEK 79 (151)
T ss_dssp ECTTT
T ss_pred ECcHH
Confidence 55544
No 388
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=77.94 E-value=1.1 Score=45.03 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002222 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (951)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (951)
..++.-+.|+.+|.|.|||+=|..+.=|..|+... -|.||+++||.|. |+.++.+ | ..+|
T Consensus 8 ~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-------~g~V~l~~i~sF~-r~k~l~~--------d----~~~I 67 (193)
T 2voo_A 8 KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-------EGWVPLEIMIKFN-RLNRLTT--------D----FNVI 67 (193)
T ss_dssp -CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-------TTCEEHHHHTTSH-HHHHHCC--------C----HHHH
T ss_pred CcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-------CCcEEeHHHhhhh-HHHHhcC--------C----HHHH
Confidence 34667888999999999999998888788777642 6899999999764 3333332 2 3778
Q ss_pred HHHhhccC-CcEEeecCceeeeecCCCC
Q 002222 182 MRAATRLS-EFVVTSEGQLSIWRKDPYP 208 (951)
Q Consensus 182 ~~a~~~~~-~~~~~s~~~~~~~~~~p~~ 208 (951)
..|.+.+. ..+.+++++..++|..+.|
T Consensus 68 ~~Al~~S~~~~lev~ed~~~vrR~~~~p 95 (193)
T 2voo_A 68 VEALSKSKAELMEISEDKTKIRRSPSKP 95 (193)
T ss_dssp HHHHHTCSSCCEEECTTSSEEEECTTSC
T ss_pred HHHHhhcccceEEEecccceEEecccCC
Confidence 88888761 3388999999999995333
No 389
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=76.89 E-value=1.9 Score=43.11 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=50.1
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002222 580 PSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
...|+.+.|.|+..+. +|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.|. +||.+
T Consensus 3 i~~gd~V~v~Y~g~~~-dG~----~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~--ippe~ 66 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTE-DGV----LVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAND 66 (171)
T ss_dssp CCTTEEEEEEEEEEET-TSC----EEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEE--EETTT
T ss_pred CCCCCEEEEEEEEEEC-CCC----EEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEE--ECcHH
Confidence 3689999999999964 453 56654 46999999999999999999999999998877 44443
No 390
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=75.29 E-value=3 Score=45.28 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCCh---HHHHHHHHHHH
Q 002222 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ---KSLSRAAKIIH 758 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISe---emLe~ArkrLs 758 (951)
+.++... ..++..|||.=||+|..+....+.+ .+.+|+|+++ ..++.|++|+.
T Consensus 233 ~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 233 ERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp HHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred HHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHH
Confidence 3444443 3567899999999999999888877 7899999999 99999988864
No 391
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=74.77 E-value=3 Score=35.74 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=48.3
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcccc
Q 002222 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 472 (951)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 472 (951)
-|+..|-.+|..+++..|.|... .. |......|.|+|.|-.+ .
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~-----------------------------~~--Gp~h~~~F~~~v~v~g~------~ 46 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIV-----------------------------KE--GPSHKSLFQSTVILDGV------R 46 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEE-----------------------------EE--SSTTSCEEEEEEEETTE------E
T ss_pred CHHHHHHHHHHHcCCCCCEEEEE-----------------------------eE--CCCCCCeEEEEEEECCE------E
Confidence 47899999999999999999776 11 22223349999998532 1
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 473 CSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 473 ~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
+....-++...+|=|+||..+|.+|.
T Consensus 47 ~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 47 YNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp EECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred EEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 22222225667899999999998874
No 392
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=73.79 E-value=9.3 Score=41.78 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=74.5
Q ss_pred hhhhhhcCCC---hhHHHHHHHHHHH-----hhcCCCCEEEEEcCccchhHHHHh----cCCCCC--ceEEEEeCCh---
Q 002222 685 DRMEQALFSP---PLSKQRVEYALQH-----IKESCATTLVDFGCGSGSLLDSLL----DYPTAL--EKIVGVDISQ--- 747 (951)
Q Consensus 685 eRye~~~F~P---PL~~QR~e~Vldl-----L~~~k~krVLDIGCGeG~ll~~LA----k~g~~~--~qVVGVDISe--- 747 (951)
+++...+|+. .+.+.++-|+..- ......-+|||+|-|+|....... +.. +. -+++.+|-.+
T Consensus 61 ~~f~e~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~-~~~~L~~iS~Ek~pl~~ 139 (308)
T 3vyw_A 61 KTYGEPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVN-PKLRVEIISFEKELLKE 139 (308)
T ss_dssp TTTTEESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHC-TTCEEEEEEEESSCCSC
T ss_pred CccCCccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhC-CCcceEEEeecHHHHHh
Confidence 5677777774 4788888777532 223344689999999999753222 212 22 3466777421
Q ss_pred -----HHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--CCCCccEEEEccccccCchhH-HHHHHHHHH
Q 002222 748 -----KSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDE-ASQFGNIVL 819 (951)
Q Consensus 748 -----emLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~--~d~sFDlVVcieVLEHL~dD~-l~~L~eeL~ 819 (951)
+.+....+.+-...... ..+...+++..||+.+.-. ....||+|+.-..=---.++- -..+.+.|+
T Consensus 140 ~~~~~~~~~~l~~~l~~~~p~~------~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~ 213 (308)
T 3vyw_A 140 FPILPEPYREIHEFLLERVPEY------EGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIK 213 (308)
T ss_dssp CCCCCTTSHHHHHHHHHHCSEE------ECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHH
T ss_pred hHhchHhHHHHHHHHHHhCccc------cCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHH
Confidence 11111111111110000 1233467888999976322 234799998744211111110 134445799
Q ss_pred HccCCCEEEEE
Q 002222 820 SSFRPRILIVS 830 (951)
Q Consensus 820 RvLKPGvLIIS 830 (951)
+.++||..+.+
T Consensus 214 ~~~~pgg~laT 224 (308)
T 3vyw_A 214 ERIDEKGYWVS 224 (308)
T ss_dssp TTEEEEEEEEE
T ss_pred HHhCCCcEEEE
Confidence 99999966554
No 393
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=72.36 E-value=7 Score=41.79 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=37.2
Q ss_pred hhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 708 IKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 708 L~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
.+..++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS 218 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh
Confidence 3556789999999985 788888887653 699999999998888854
No 394
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=71.81 E-value=2.2 Score=46.63 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC---
Q 002222 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--- 790 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~--- 790 (951)
.+++|+-||.|.+...+.+.+-....|.++|+++..++..+.+.. ...++.+|+.++...
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------------~~~~~~~DI~~~~~~~~~ 66 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----------------ETNLLNRNIQQLTPQVIK 66 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECCCGGGCCHHHHH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----------------CCceeccccccCCHHHhc
Confidence 479999999999998887765112457899999998888765431 234567888776532
Q ss_pred CCCccEEEE
Q 002222 791 LHGFDIGTC 799 (951)
Q Consensus 791 d~sFDlVVc 799 (951)
...+|+++.
T Consensus 67 ~~~~D~l~g 75 (333)
T 4h0n_A 67 KWNVDTILM 75 (333)
T ss_dssp HTTCCEEEE
T ss_pred cCCCCEEEe
Confidence 236898885
No 395
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=71.58 E-value=17 Score=34.99 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=54.9
Q ss_pred CCEEEEEcCcc-chh-HHHHhcC-CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 713 ATTLVDFGCGS-GSL-LDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 713 ~krVLDIGCGe-G~l-l~~LAk~-g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
+.+|+=+|||. |.. +..|.+. + .+|+++|.+++.++.+++. .+..+.+|..+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g---~~V~vid~~~~~~~~~~~~-------------------g~~~~~gd~~~~~~ 96 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG---KISLGIEIREEAAQQHRSE-------------------GRNVISGDATDPDF 96 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC---SCEEEEESCHHHHHHHHHT-------------------TCCEEECCTTCHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC---CeEEEEECCHHHHHHHHHC-------------------CCCEEEcCCCCHHH
Confidence 56899999874 433 3445555 5 6899999999877665431 2445667765422
Q ss_pred --C--CCCCccEEEEccccccCchhHH-HHHHHHHHHccCCC-EEEEEecCCc
Q 002222 789 --S--RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 789 --~--~d~sFDlVVcieVLEHL~dD~l-~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
. ....+|+|+..- +++.. ..+. ...+.+.|+ .++..+-+.+
T Consensus 97 l~~~~~~~~ad~vi~~~-----~~~~~~~~~~-~~~~~~~~~~~ii~~~~~~~ 143 (183)
T 3c85_A 97 WERILDTGHVKLVLLAM-----PHHQGNQTAL-EQLQRRNYKGQIAAIAEYPD 143 (183)
T ss_dssp HHTBCSCCCCCEEEECC-----SSHHHHHHHH-HHHHHTTCCSEEEEEESSHH
T ss_pred HHhccCCCCCCEEEEeC-----CChHHHHHHH-HHHHHHCCCCEEEEEECCHH
Confidence 1 245689887632 11222 2222 356667777 5555544433
No 396
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=71.53 E-value=4.3 Score=34.98 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=47.9
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccc
Q 002222 392 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 471 (951)
Q Consensus 392 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 471 (951)
.-|...|-.+|..+.+. |.|.... .. |......|.|+|.|- + ++
T Consensus 7 ~d~ks~LqE~~q~~~~~-p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~i~----~-~~ 50 (76)
T 1ekz_A 7 KSPISQVHEIGIKRNMT-VHFKVLR----------------------------EE--GPAHMKNFITACIVG----S-IV 50 (76)
T ss_dssp SCHHHHHHHHHHHTTCC-CEEEESS----------------------------SC--CSSSCSCSSEEEEET----T-EE
T ss_pred CCHHHHHHHHHHHcCCC-CEEEEEE----------------------------eE--CCCCCCcEEEEEEEC----C-EE
Confidence 45899999999999998 9987650 01 222233499999983 2 11
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 472 ECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
....-+..-+|=|+||..+|..|.
T Consensus 51 ---~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 51 ---TEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp ---EEECCCSTTSSSHHHHHHHHHHHT
T ss_pred ---EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 223335667899999999998874
No 397
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=71.27 E-value=6.8 Score=41.53 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=50.6
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-CC
Q 002222 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 792 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d~ 792 (951)
.+|||+=||-|.+...|.+.| ..-|.++|+++.+.+.-+.+. .-.++.+|+.+++.. ..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~------------------~~~~~~~DI~~i~~~~~~ 60 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH------------------SAKLIKGDISKISSDEFP 60 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHC------------------CSEEEESCGGGCCGGGSC
T ss_pred CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC------------------CCCcccCChhhCCHhhCC
Confidence 479999999999999888876 356779999998888776542 125678999887643 35
Q ss_pred CccEEEE
Q 002222 793 GFDIGTC 799 (951)
Q Consensus 793 sFDlVVc 799 (951)
.+|+++.
T Consensus 61 ~~D~l~g 67 (331)
T 3ubt_Y 61 KCDGIIG 67 (331)
T ss_dssp CCSEEEC
T ss_pred cccEEEe
Confidence 6899886
No 398
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=71.19 E-value=6.3 Score=43.08 Aligned_cols=91 Identities=20% Similarity=0.365 Sum_probs=65.1
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhcc-----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhh
Q 002222 578 IYPSNGCLSFISYSVSLVIEGETMKELLES-----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAA 652 (951)
Q Consensus 578 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~-----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa 652 (951)
-.|..|+.+-|.|...|. +|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.+. +||..-+=..
T Consensus 258 ~~~~~gd~V~v~y~g~l~-dG~----~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~--ip~~~aYG~~ 330 (356)
T 3jxv_A 258 ERPNEGAVVTVKITGKLQ-DGT----VFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVT--IPPEYAYGST 330 (356)
T ss_dssp CCCCTTCEEEEEEEEEES-SSC----EEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEE--ECGGGTTTTS
T ss_pred CCCCCCCEEEEEEEEEEC-CCC----EEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEE--EChHHccCCC
Confidence 589999999999999984 343 3333 456999999999999999999999999999887 5665433221
Q ss_pred ccCcccchhcccccccccceeeeeccc
Q 002222 653 ADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 653 ~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
... ....++..+. +.|.|.++..
T Consensus 331 ~~~---~~~~Ip~~~~-l~f~vel~~~ 353 (356)
T 3jxv_A 331 ESK---QDAIVPPNST-VIYEVELVSF 353 (356)
T ss_dssp CEE---SSSEECTTCC-EEEEEEEEEE
T ss_pred CcC---CCCcCCcCCe-EEEEEEEEEE
Confidence 110 1122344455 7777777654
No 399
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=70.95 E-value=54 Score=35.94 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=74.9
Q ss_pred HhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhh------hhccc--ccCCCC---CCC
Q 002222 707 HIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK------LSKKL--DAAVPC---TDV 774 (951)
Q Consensus 707 lL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~------ls~~~--~~l~Pr---~~~ 774 (951)
.+... +...|+-+|||-=.....|...+.....++=||. ++.++.-++.+... +.... +..... -..
T Consensus 84 fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s 162 (334)
T 3iei_A 84 FLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDS 162 (334)
T ss_dssp HHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEEC
T ss_pred HHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCC
Confidence 34444 5679999999987777777654212367888886 55555444444320 00000 000000 013
Q ss_pred ccEEEEEccccccC----------CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 775 KSAVLFDGSITVFD----------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 775 ~nVtf~qGDa~dLp----------~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
.+..++..|+.+.. +....--++++-.++.+|+++....+.+.+.....++.+++-.|
T Consensus 163 ~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~ 230 (334)
T 3iei_A 163 KRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQ 230 (334)
T ss_dssp SSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEE
T ss_pred CceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 57888889987632 11223447888889999999998888888888887774444333
No 400
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=70.73 E-value=9.5 Score=42.85 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=53.1
Q ss_pred CCEEEEEcCccchhHHHHhcCC------CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYP------TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g------~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
+-.|+|+|.|.|.++.-+++.. ....+++-||+|+...+.-++++.. ..+|.+. .++.+
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~--------------~~~v~W~-~~l~~ 145 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--------------IRNIHWH-DSFED 145 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--------------CSSEEEE-SSGGG
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC--------------CCCeEEe-CChhh
Confidence 4479999999999986665321 0124899999999888766555421 1257765 35555
Q ss_pred cCCCCCCccEEEEccccccCc
Q 002222 787 FDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~ 807 (951)
++. ..-+|++++++.-+|
T Consensus 146 lp~---~~~~viANE~fDAlP 163 (387)
T 1zkd_A 146 VPE---GPAVILANEYFDVLP 163 (387)
T ss_dssp SCC---SSEEEEEESSGGGSC
T ss_pred cCC---CCeEEEeccccccCc
Confidence 552 255889999998888
No 401
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=69.97 E-value=5.4 Score=42.95 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=51.8
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCce-EEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEK-IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~q-VVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
...+++|+=||.|.+...+.+.|- ... |.++|+++..++..+.+. +...++.+|+.++...
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~-----------------~~~~~~~~DI~~i~~~ 76 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRH-----------------QGKIMYVGDVRSVTQK 76 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHT-----------------TTCEEEECCGGGCCHH
T ss_pred CCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhC-----------------CCCceeCCChHHccHH
Confidence 456899999999999998888772 112 689999999887765432 1335778898877532
Q ss_pred ----CCCccEEEEc
Q 002222 791 ----LHGFDIGTCL 800 (951)
Q Consensus 791 ----d~sFDlVVci 800 (951)
...+|+++..
T Consensus 77 ~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 77 HIQEWGPFDLVIGG 90 (295)
T ss_dssp HHHHTCCCSEEEEC
T ss_pred HhcccCCcCEEEec
Confidence 2468999873
No 402
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=69.14 E-value=12 Score=39.59 Aligned_cols=93 Identities=22% Similarity=0.366 Sum_probs=63.1
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCc---cchhhhhhhhhccccccceecccCCchhhhhh
Q 002222 576 SGI-YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFCKELPPQELILA 651 (951)
Q Consensus 576 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a---~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 651 (951)
.|. .|..|+.|.|.|+..| +| .++.+. .++|.+|.|. +..-++..+..|.+|..+.+. ++|..
T Consensus 36 ~g~~~p~~~~~v~v~y~g~~--~g----~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~--i~p~~---- 102 (336)
T 1p5q_A 36 EGYAKPNEGAIVEVALEGYY--KD----KLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY--LKPSY---- 102 (336)
T ss_dssp CCSCCCCTTCEEEEEEEEEE--TT----EEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE--ECTTT----
T ss_pred CCCCCCCCCCeEEEEEEEEE--CC----EEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEE--ECCcc----
Confidence 565 7999999999999988 55 356665 6999999886 488999999999999988776 45553
Q ss_pred hccCcccchhcccccccccceeeeecccCCC
Q 002222 652 AADDSARTFSLLSSRACCLEYHITLLRVTEP 682 (951)
Q Consensus 652 a~~~~~~DiSlL~~d~~~LEyyI~LL~v~ep 682 (951)
+-+........++.... +.|.+.+.....+
T Consensus 103 ayg~~g~~~~~i~~~~~-l~f~~~L~~~~~A 132 (336)
T 1p5q_A 103 AFGSVGKEKFQIPPNAE-LKYELHLKSFEKA 132 (336)
T ss_dssp TTTTTCBGGGTBCSSCC-EEEEEEEEEEECC
T ss_pred ccCcCCCCccCCCCCCe-EEEEEEEeecccc
Confidence 22222211112333333 5566666654443
No 403
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=68.16 E-value=27 Score=34.68 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=61.8
Q ss_pred EEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC---
Q 002222 715 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--- 789 (951)
Q Consensus 715 rVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~--- 789 (951)
+|+=+|+|. |. ++..|.+.+ ..|+.+|.+++.++...+. ..+.++.||+.+...
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g---~~v~vid~~~~~~~~l~~~------------------~~~~~i~gd~~~~~~l~~ 60 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRK---YGVVIINKDRELCEEFAKK------------------LKATIIHGDGSHKEILRD 60 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHH------------------SSSEEEESCTTSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHH------------------cCCeEEEcCCCCHHHHHh
Confidence 577788753 22 234455555 7899999999887765432 135678898876432
Q ss_pred -CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002222 790 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 842 (951)
Q Consensus 790 -~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~ 842 (951)
.....|+|++.- +++....+...+.+.+.|. .++.-+-+.++...+..
T Consensus 61 a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~ 110 (218)
T 3l4b_C 61 AEVSKNDVVVILT-----PRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKK 110 (218)
T ss_dssp HTCCTTCEEEECC-----SCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHH
T ss_pred cCcccCCEEEEec-----CCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHH
Confidence 245789887643 2344444444456666666 66655555555555543
No 404
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=66.21 E-value=10 Score=39.44 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=63.5
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhcc-ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLES-REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 654 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~-~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 654 (951)
+|-.|..|+.|.|.|...|. +|+ +++| ...++|.+| .+++-++..+..|.+|..+.+. +||..-+=....
T Consensus 128 ~G~~p~~gd~V~V~Y~g~l~-dG~----vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~--IPp~lAYG~~g~ 198 (219)
T 3oe2_A 128 TGPKPDANGRVEVRYVGRLP-DGK----IFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLV--IPSDQAYGAEGA 198 (219)
T ss_dssp CSCCCCTTSEEEEEEEEECT-TSC----EEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE--ECGGGTTTTTCB
T ss_pred CCccCCCCCEEEEEEEEEEC-CCC----EeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEE--ECchhcCCCCCC
Confidence 57789999999999999985 443 3444 466888877 7999999999999999998887 666533322111
Q ss_pred Ccccchhcccccccccceeeeeccc
Q 002222 655 DSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 655 ~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
. ..+|-.+. +.|.|.++.+
T Consensus 199 ---~--~~IPpnst-LvFeVeLl~I 217 (219)
T 3oe2_A 199 ---G--DLIDPFTP-LVFEIELIAV 217 (219)
T ss_dssp ---T--TTBCTTCC-EEEEEEEEEE
T ss_pred ---C--CCCCCCCe-EEEEEEEEEE
Confidence 1 12445555 7777777764
No 405
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=65.05 E-value=6.3 Score=42.04 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=65.9
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCc---cchhhhhhhhhccccccceecccCCchhhhhh
Q 002222 576 SGI-YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFCKELPPQELILA 651 (951)
Q Consensus 576 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a---~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 651 (951)
.|. .|..|..+-|.|...+ +|+ .+++ ..|+|.+|.|. +++-++..+..|.+|..+.+. +||.--+=.
T Consensus 179 ~G~~~~~~gd~V~i~y~g~~--dG~----~fd~-~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~--ip~~~~yG~ 249 (280)
T 1q1c_A 179 EGYAKPNEGAIVEVALEGYY--KDK----LFDQ-RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY--LKPSYAFGS 249 (280)
T ss_dssp SCSCCCCTTCEEEEEEEEEE--TTE----EEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE--ECGGGTTTT
T ss_pred cccccccCCceEEEEEEEEe--CCE----EEec-CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEE--EChhHcCCc
Confidence 454 6899999999999987 553 5666 57999999998 499999999999999999877 354321111
Q ss_pred hccCcccchhcccccccccceeeeecccCCCh
Q 002222 652 AADDSARTFSLLSSRACCLEYHITLLRVTEPP 683 (951)
Q Consensus 652 a~~~~~~DiSlL~~d~~~LEyyI~LL~v~ep~ 683 (951)
. + .+++ .+|.... +.|.|.++.+..+.
T Consensus 250 ~-~--~~~~-~IP~~~~-l~f~V~L~~i~~~~ 276 (280)
T 1q1c_A 250 V-G--KEKF-QIPPNAE-LKYELHLKSFEKAK 276 (280)
T ss_dssp T-C--BGGG-TBCTTCC-EEEEEEEEEEECCC
T ss_pred C-C--CccC-ccCCCCe-EEEEEEEEEEeCCC
Confidence 1 1 0111 1344444 78888888765543
No 406
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=63.87 E-value=53 Score=30.60 Aligned_cols=105 Identities=7% Similarity=0.056 Sum_probs=60.0
Q ss_pred CCEEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCC-hHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 713 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDIS-QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 713 ~krVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDIS-eemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
.++|+=+|+|. |. ++..|.+.+ .+|+.+|.+ ++..+...+... ..+.++.||..+...
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g---~~V~vid~~~~~~~~~~~~~~~----------------~~~~~i~gd~~~~~~ 63 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRG---QNVTVISNLPEDDIKQLEQRLG----------------DNADVIPGDSNDSSV 63 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT---CCEEEEECCCHHHHHHHHHHHC----------------TTCEEEESCTTSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEECCChHHHHHHHHhhc----------------CCCeEEEcCCCCHHH
Confidence 35788888752 22 223444555 789999997 454444432211 146788899875432
Q ss_pred ----CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002222 790 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 841 (951)
Q Consensus 790 ----~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~ 841 (951)
.....|+|++.-- ++....+.....+.+.|. .++.-.-+.++...+.
T Consensus 64 l~~a~i~~ad~vi~~~~-----~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~ 115 (153)
T 1id1_A 64 LKKAGIDRCRAILALSD-----NDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK 115 (153)
T ss_dssp HHHHTTTTCSEEEECSS-----CHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHH
T ss_pred HHHcChhhCCEEEEecC-----ChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 2457888876532 234344444466677776 5555555555544444
No 407
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=63.12 E-value=52 Score=36.83 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002222 713 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 713 ~krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
..+|+=+|+|. |..+ ..|.+.+ ..|++||.+++.++.+++. .+.++.||+.+...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g---~~vvvId~d~~~v~~~~~~-------------------g~~vi~GDat~~~~L 61 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG---VKMVVLDHDPDHIETLRKF-------------------GMKVFYGDATRMDLL 61 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCEEEEECCHHHHHHHHHT-------------------TCCCEESCTTCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHhC-------------------CCeEEEcCCCCHHHH
Confidence 45789999874 3333 3444555 7899999999999887541 35578899887542
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002222 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 842 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~ 842 (951)
.....|+|++.- +++......-...+.+.|+ .+|+-+-+.+....+..
T Consensus 62 ~~agi~~A~~viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~ 113 (413)
T 3l9w_A 62 ESAGAAKAEVLINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ 113 (413)
T ss_dssp HHTTTTTCSEEEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred HhcCCCccCEEEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 245688877643 2244444444577888898 66665655554444443
No 408
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=63.09 E-value=7.6 Score=44.75 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=44.0
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
..+++|+=||.|.+...|.+.| ...|.++|+++...+.-+.+.. ..+...++.+|+.++.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~--------------~~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHY--------------CDPATHHFNEDIRDIT 147 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSC--------------CCTTTCEEESCTHHHH
T ss_pred cceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhcc--------------cCCCcceeccchhhhh
Confidence 4589999999999999998876 2458899999988877765421 1123445678887664
No 409
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=61.90 E-value=3.4 Score=44.72 Aligned_cols=75 Identities=8% Similarity=-0.079 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc-c--
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-F-- 787 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d-L-- 787 (951)
..+..+||+=+|+|.++..+++.+ .+++.+|.+++.++.-++++. ...+++++.+|+.. +
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~~---d~~vfvE~~~~a~~~L~~Nl~--------------~~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRSQ---DRLYLCELHPTEYNFLLKLPH--------------FNKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCTT---SEEEEECCSHHHHHHHTTSCC--------------TTSCEEEECSCHHHHHHH
T ss_pred hcCCCceeEeCCcHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHhC--------------cCCcEEEEeCcHHHHHHH
Confidence 356679999999999999999855 799999999999888766542 13478999999744 2
Q ss_pred -CCCCCCccEEEEccc
Q 002222 788 -DSRLHGFDIGTCLEV 802 (951)
Q Consensus 788 -p~~d~sFDlVVcieV 802 (951)
..+...||+|++-=-
T Consensus 153 l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPS 168 (283)
T ss_dssp HCSCTTSCEEEEECCC
T ss_pred hcCCCCCccEEEECCC
Confidence 123456999987433
No 410
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=60.83 E-value=6.9 Score=33.00 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=47.0
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcccc
Q 002222 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 472 (951)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 472 (951)
.|...|-.+|..+.+..|.|.... .. |......|.|+|.|-.+ +
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~v~~~----~-- 44 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQ----------------------------ES--GPPHKREFTITCRVETF----V-- 44 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEE----------------------------EE--SCGGGCEEEEEEEETTE----E--
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEE----------------------------eE--CCCCCCeEEEEEEECCE----E--
Confidence 488999999999999999998650 01 11122349999998431 1
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 473 CSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 473 ~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
....=+..-+|=|+||..+|..|.
T Consensus 45 --~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 45 --ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp --EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred --EEeecCCHHHHHHHHHHHHHHHHh
Confidence 122334556799999999998774
No 411
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=60.76 E-value=50 Score=32.99 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=62.6
Q ss_pred CCEEEEEcCccchhHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 713 ATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LA----k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++|+=+|+| ..+..++ +.+ . |+++|.+++.++.++ ..+.++.||+.+..
T Consensus 9 ~~~viI~G~G--~~G~~la~~L~~~g---~-v~vid~~~~~~~~~~--------------------~~~~~i~gd~~~~~ 62 (234)
T 2aef_A 9 SRHVVICGWS--ESTLECLRELRGSE---V-FVLAEDENVRKKVLR--------------------SGANFVHGDPTRVS 62 (234)
T ss_dssp -CEEEEESCC--HHHHHHHHHSTTSE---E-EEEESCGGGHHHHHH--------------------TTCEEEESCTTCHH
T ss_pred CCEEEEECCC--hHHHHHHHHHHhCC---e-EEEEECCHHHHHHHh--------------------cCCeEEEcCCCCHH
Confidence 4689999986 4443333 333 5 999999988766553 14678889987643
Q ss_pred C----CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002222 789 S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 842 (951)
Q Consensus 789 ~----~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~ 842 (951)
. .....|+|++.- +++....+.....+.+.|+ .++.-.-+.++...+..
T Consensus 63 ~l~~a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~ 116 (234)
T 2aef_A 63 DLEKANVRGARAVIVDL-----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRM 116 (234)
T ss_dssp HHHHTTCTTCSEEEECC-----SCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHH
T ss_pred HHHhcCcchhcEEEEcC-----CCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHH
Confidence 1 245789887653 3344444444567778888 77666666666555543
No 412
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=60.56 E-value=8.1 Score=45.56 Aligned_cols=152 Identities=12% Similarity=0.041 Sum_probs=75.8
Q ss_pred ChhhhhhhhcCCC--hhHHHHHHHHHHH-----hh--cCCCCEEEEEcCccchhHHHHhcCC-----------CCCceEE
Q 002222 682 PPEDRMEQALFSP--PLSKQRVEYALQH-----IK--ESCATTLVDFGCGSGSLLDSLLDYP-----------TALEKIV 741 (951)
Q Consensus 682 p~EeRye~~~F~P--PL~~QR~e~Vldl-----L~--~~k~krVLDIGCGeG~ll~~LAk~g-----------~~~~qVV 741 (951)
|..++|...+|+. .+.+.|+-|+... .. ..+.-+|+|+|.|+|.....+.+.. ...-+++
T Consensus 19 ~~s~~f~d~y~s~~~~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~ 98 (689)
T 3pvc_A 19 PVSEQFGDIYFSNEDGLEETHHVFLKGNGFPARFASHPQQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYI 98 (689)
T ss_dssp ----------CCSTTSHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEE
T ss_pred ccCcccCCcccCCcCHHHhhHhhccccCCHHHHHhhCCCCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEE
Confidence 3345566666654 5666666554321 11 2344689999999999876554321 0114789
Q ss_pred EEeC---ChHHHHHHHHHHH-------hhhhcccccC------CCCCCCccEEEEEccccccCCC-----CCCccEEEEc
Q 002222 742 GVDI---SQKSLSRAAKIIH-------SKLSKKLDAA------VPCTDVKSAVLFDGSITVFDSR-----LHGFDIGTCL 800 (951)
Q Consensus 742 GVDI---SeemLe~ArkrLs-------a~ls~~~~~l------~Pr~~~~nVtf~qGDa~dLp~~-----d~sFDlVVci 800 (951)
.++. +.+-+..|-+... +......... .-..+..+++++.||+.+.-.. ...+|+++.-
T Consensus 99 s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD 178 (689)
T 3pvc_A 99 SFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLD 178 (689)
T ss_dssp EEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEEC
T ss_pred EeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEEC
Confidence 9998 6666665432100 0111100000 0001223788999999764322 3679999875
Q ss_pred cccccCchhH-HHHHHHHHHHccCCCEEEEEecC
Q 002222 801 EVIEHMEEDE-ASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 801 eVLEHL~dD~-l~~L~eeL~RvLKPGvLIISTPN 833 (951)
..--.-.++. ...|...++++++||..+.+...
T Consensus 179 ~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~ 212 (689)
T 3pvc_A 179 GFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA 212 (689)
T ss_dssp SSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred CCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 4322211110 13444569999999965554433
No 413
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=59.29 E-value=86 Score=32.13 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=54.2
Q ss_pred CEEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc---cccccC
Q 002222 714 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG---SITVFD 788 (951)
Q Consensus 714 krVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG---Da~dLp 788 (951)
++|.=||+|. |. ++..|++.+ .+|+++|.+++.++..++. . .. . ... ........ +..+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~-g--~~-~------~~~-~~~~~~~~~~~~~~~~~ 69 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGG---NDVTLIDQWPAHIEAIRKN-G--LI-A------DFN-GEEVVANLPIFSPEEID 69 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHH-C--EE-E------EET-TEEEEECCCEECGGGCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhC-C--EE-E------EeC-CCeeEecceeecchhhc
Confidence 4799999985 33 345566666 6899999999877766542 0 00 0 000 00000000 111111
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002222 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
.....+|+|+..- +......+.+.+...++|+.+|++..|
T Consensus 70 ~~~~~~d~vi~~v-----~~~~~~~v~~~l~~~l~~~~~iv~~~~ 109 (316)
T 2ew2_A 70 HQNEQVDLIIALT-----KAQQLDAMFKAIQPMITEKTYVLCLLN 109 (316)
T ss_dssp TTSCCCSEEEECS-----CHHHHHHHHHHHGGGCCTTCEEEECCS
T ss_pred ccCCCCCEEEEEe-----ccccHHHHHHHHHHhcCCCCEEEEecC
Confidence 1113688887643 223334444568888898866666555
No 414
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=57.67 E-value=48 Score=35.14 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=64.8
Q ss_pred CCEEEEEcCccchhHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--
Q 002222 713 ATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 789 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~-~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-- 789 (951)
.++|+=+|+ |..+..+++.-. ... |+.+|.+++.++ +++ ..+.++.||+.+...
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-------------------~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-------------------SGANFVHGDPTRVSDLE 171 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-------------------TTCEEEESCTTSHHHHH
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-------------------CCcEEEEeCCCCHHHHH
Confidence 468998887 455555544321 115 999999998887 543 156789999876542
Q ss_pred --CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002222 790 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 842 (951)
Q Consensus 790 --~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~ 842 (951)
.....|.|++.- ++|....+.-...+-+.|. .++.-.-+.++...+..
T Consensus 172 ~a~i~~a~~vi~~~-----~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~ 222 (336)
T 1lnq_A 172 KANVRGARAVIVDL-----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRM 222 (336)
T ss_dssp HTCSTTEEEEEECC-----SSHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHH
T ss_pred hcChhhccEEEEcC-----CccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 245788887643 3344444444567888888 66666666666555543
No 415
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=57.52 E-value=14 Score=38.42 Aligned_cols=87 Identities=20% Similarity=0.361 Sum_probs=60.5
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 651 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 651 (951)
+|--|..|+.|.|.|...|. +|+ .++|. ..++|.+ |.+++-++..+..|.+|....|. +||..-+=.
T Consensus 132 ~G~~p~~gD~V~V~Y~g~l~-dG~----vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~--IP~~laYG~ 202 (224)
T 1q6h_A 132 KGEAPKDSDTVVVNYKGTLI-DGK----EFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV--IPPELAYGK 202 (224)
T ss_dssp SSCCCCTTCEEEEEEEEEET-TSC----EEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEE--ECGGGTTTT
T ss_pred cCccccCCCEEEEEEEEEeC-CCC----EEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEE--ECchhhcCc
Confidence 57789999999999999985 454 34443 5678877 58999999999999999999885 555432211
Q ss_pred hccCcccchhcccccccccceeeeecc
Q 002222 652 AADDSARTFSLLSSRACCLEYHITLLR 678 (951)
Q Consensus 652 a~~~~~~DiSlL~~d~~~LEyyI~LL~ 678 (951)
-. .. .+|-... +.|.|.++.
T Consensus 203 ~g---~~---~IPp~st-LiF~VeL~~ 222 (224)
T 1q6h_A 203 AG---VP---GIPPNST-LVFDVELLD 222 (224)
T ss_dssp TC---BT---TBCTTCC-EEEEEEEEE
T ss_pred CC---CC---CCCCCCE-EEEEEEEEE
Confidence 11 11 1444444 677776654
No 416
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=57.00 E-value=7.1 Score=33.71 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=46.8
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002222 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (951)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (951)
|+..|-.+|..+.+..|.|.... .. |......|.|+|.|-.+ + +
T Consensus 6 ~Kt~LqE~~q~~~~~~p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~v~g~----~--~ 49 (76)
T 3adj_A 6 CKNLLQEYAQKMNYAIPLYQCQK----------------------------VE--TLGRVTQFTCTVEIGGI----K--Y 49 (76)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEE----------------------------EE--CSSSCEEEEEEEEETTE----E--E
T ss_pred HHHHHHHHHHHhCCCCCeEEEee----------------------------cc--CCCCCCcEEEEEEECCE----E--E
Confidence 68899999999999999987650 01 11122339999998432 1 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 474 SPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
....-+..-+|=|+||.++|.+|.
T Consensus 50 -~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 50 -TGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp -ECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred -EEeccCCHHHHHHHHHHHHHHHHh
Confidence 122335566899999999999885
No 417
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=55.49 E-value=11 Score=34.69 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=48.0
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccc
Q 002222 392 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 471 (951)
Q Consensus 392 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 471 (951)
.-|+..|-.+|..+++..|.|... .. |......|.|+|.|-.+
T Consensus 17 ~d~Kt~LqE~~Q~~~~~~P~Y~~~-----------------------------~~--Gp~H~~~F~~~V~v~g~------ 59 (103)
T 2l2n_A 17 YVFKSRLQEYAQKYKLPTPVYEIV-----------------------------KE--GPSHKSLFQSTVILDGV------ 59 (103)
T ss_dssp --CTTHHHHHHHHTTCCCCEEEEE-----------------------------EE--SCSSSCEEEEEEEETTE------
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEE-----------------------------eE--cCCCCCeEEEEEEECCE------
Confidence 357889999999999999998765 01 22223349999988532
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 472 ECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
.+....-+++..+|=|+||.++|.+|.
T Consensus 60 ~~~~G~G~~SKK~Aeq~AA~~AL~~L~ 86 (103)
T 2l2n_A 60 RYNSLPGFFNRKAAEQSAAEVALRELA 86 (103)
T ss_dssp EEECCSCBSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 122222225667899999999999986
No 418
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=54.90 E-value=22 Score=41.65 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=82.7
Q ss_pred ChhhhhhhhcCCC--hhHHHHHHHHHHH-h----h--cCCCCEEEEEcCccchhHHHHhcCC-----------CCCceEE
Q 002222 682 PPEDRMEQALFSP--PLSKQRVEYALQH-I----K--ESCATTLVDFGCGSGSLLDSLLDYP-----------TALEKIV 741 (951)
Q Consensus 682 p~EeRye~~~F~P--PL~~QR~e~Vldl-L----~--~~k~krVLDIGCGeG~ll~~LAk~g-----------~~~~qVV 741 (951)
|.-+++...+|+. .+.+.|+-|+..- | . ..+.-+|||+|-|+|.......+.. ...-+++
T Consensus 27 ~~s~~~~~~y~s~~~~~~e~~~vf~~~~~l~~~~~~~~~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~ 106 (676)
T 3ps9_A 27 PVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFI 106 (676)
T ss_dssp CEETTTTEESSCTTTHHHHHHHHTTGGGTHHHHGGGCSSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEE
T ss_pred ccCccCCCcccCCcCHHHhhHhhhhccCChhHHHHhCCCCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEE
Confidence 3446667777765 5667777665432 1 2 1233589999999999875443321 1124689
Q ss_pred EEeC---ChHHHHHHHHHHH-------hhhhcccccCCC------CCCCccEEEEEccccccCCC-----CCCccEEEEc
Q 002222 742 GVDI---SQKSLSRAAKIIH-------SKLSKKLDAAVP------CTDVKSAVLFDGSITVFDSR-----LHGFDIGTCL 800 (951)
Q Consensus 742 GVDI---SeemLe~ArkrLs-------a~ls~~~~~l~P------r~~~~nVtf~qGDa~dLp~~-----d~sFDlVVci 800 (951)
+++. +.+.+..+-.... +........... ..+..+++++.||+.+.-.. ...||+|+.-
T Consensus 107 s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D 186 (676)
T 3ps9_A 107 SFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLD 186 (676)
T ss_dssp EEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEEC
Confidence 9998 8888875533110 000000000000 01124677888998763221 3579999875
Q ss_pred cccccCchhH-HHHHHHHHHHccCCCEEEEEec
Q 002222 801 EVIEHMEEDE-ASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 801 eVLEHL~dD~-l~~L~eeL~RvLKPGvLIISTP 832 (951)
..--...++- -..+...|+++++||..+.+..
T Consensus 187 ~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 187 GFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 219 (676)
T ss_dssp CSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred CCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 4322222110 1234456999999995555433
No 419
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=54.69 E-value=15 Score=37.95 Aligned_cols=90 Identities=19% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002222 576 SGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 651 (951)
Q Consensus 576 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 651 (951)
+|-.|..|+.|.|.|...|. +|+ .+++. ..++|.+ |.+++-++..+..|.+|....|. +||..-+=.
T Consensus 117 ~G~~p~~gD~V~V~Y~g~l~-dG~----vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~--IP~~laYG~ 187 (213)
T 1fd9_A 117 NGVKPGKSDTVTVEYTGRLI-DGT----VFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIY--VPSGLAYGP 187 (213)
T ss_dssp CSCCCCTTCEEEEEEEEEET-TSC----EEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEE--ECGGGTTTT
T ss_pred CCccCCCCCEEEEEEEEEEC-CCC----EEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEE--ECchhccCc
Confidence 57789999999999999985 554 34433 5688888 58999999999999999998877 555433321
Q ss_pred hccCcccchhcccccccccceeeeecccC
Q 002222 652 AADDSARTFSLLSSRACCLEYHITLLRVT 680 (951)
Q Consensus 652 a~~~~~~DiSlL~~d~~~LEyyI~LL~v~ 680 (951)
... . ..++-... +.|.|.++.+.
T Consensus 188 ~g~--~---~~Ipp~st-LiF~VeLl~v~ 210 (213)
T 1fd9_A 188 RSV--G---GPIGPNET-LIFKIHLISVK 210 (213)
T ss_dssp CCC--S---SSCCTTCC-EEEEEEEEEEE
T ss_pred cCC--C---CCCCCCCe-EEEEEEEEEEE
Confidence 110 0 12344444 77777776543
No 420
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=54.60 E-value=26 Score=32.92 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 711 SCATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++|+=+|||. |..+ ..|.+.+ .+|+++|.+++.++.+++ ...+.++.+|..+..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g---~~V~vid~~~~~~~~~~~------------------~~g~~~~~~d~~~~~ 75 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG---HSVVVVDKNEYAFHRLNS------------------EFSGFTVVGDAAEFE 75 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCGGGGGGSCT------------------TCCSEEEESCTTSHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHh------------------cCCCcEEEecCCCHH
Confidence 4568999999974 4433 4445555 689999998765433310 012345666654321
Q ss_pred ---C-CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002222 789 ---S-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 838 (951)
Q Consensus 789 ---~-~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~ 838 (951)
. ....+|+|+..-- .+........+.+.+.|. .++..+-+..+..
T Consensus 76 ~l~~~~~~~ad~Vi~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~ 125 (155)
T 2g1u_A 76 TLKECGMEKADMVFAFTN-----DDSTNFFISMNARYMFNVENVIARVYDPEKIK 125 (155)
T ss_dssp HHHTTTGGGCSEEEECSS-----CHHHHHHHHHHHHHTSCCSEEEEECSSGGGHH
T ss_pred HHHHcCcccCCEEEEEeC-----CcHHHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence 1 1346898876432 122222222355555666 5555444444433
No 421
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=54.54 E-value=12 Score=33.59 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=53.1
Q ss_pred eccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEee
Q 002222 385 TRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFS 464 (951)
Q Consensus 385 ~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s 464 (951)
+--.|...-|+..|-.+|....+..|.|.... .. |..-...|.|+|.|-.
T Consensus 8 ~~~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~----------------------------~~--Gp~H~~~F~~~v~v~g 57 (88)
T 3adl_A 8 SGLVPRGSHEVGALQELVVQKGWRLPEYTVTQ----------------------------ES--GPAHRKEFTMTCRVER 57 (88)
T ss_dssp -CCCCTTCCHHHHHHHHHHHTTCCCCEEEEEE----------------------------EE--SCTTSCEEEEEEEETT
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCCCCEEEEEE----------------------------eE--CCCCCCeEEEEEEECC
Confidence 33467778899999999999999999998750 01 2222334999999853
Q ss_pred ccCCcccccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 465 KSRDPILECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
+ + . ...=+..-+|=|+||.++|..|.
T Consensus 58 ~----~--~--~G~G~SKK~Aeq~AA~~AL~~L~ 83 (88)
T 3adl_A 58 F----I--E--IGSGTSKKLAKRNAAAKMLLRVH 83 (88)
T ss_dssp E----E--E--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred E----E--E--EEeeCCHHHHHHHHHHHHHHHHH
Confidence 1 1 1 22234445899999999999885
No 422
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=53.94 E-value=8.3 Score=36.13 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeE
Q 002222 379 LPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRC 458 (951)
Q Consensus 379 lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c 458 (951)
||....---+|...-|+..|-.+|..+++ .|.|... .. |......|.|
T Consensus 13 ~d~~~~~~~~~~~~d~Kt~LqE~~Qk~~~-~p~Y~~~-----------------------------~~--Gp~H~~~F~~ 60 (113)
T 1uil_A 13 VDLNAGLHGNWTLENAKARLNQYFQKEKI-QGEYKYT-----------------------------QV--GPDHNRSFIA 60 (113)
T ss_dssp CCSSHHHHCCCCHHHHHHHHHHHHHHSCC-CCCCEEE-----------------------------EE--SCSTTCEEEE
T ss_pred CCcCcccccccccCCHHHHHHHHHHHCCC-CCeEEEe-----------------------------eE--CCCCCCcEEE
Confidence 55555455678777899999999999998 8988722 11 1122334999
Q ss_pred EEEEeeccCCcccccCchhhhhhhhhhHhhhhhHHHHHHHh
Q 002222 459 EVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNA 499 (951)
Q Consensus 459 ~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~ 499 (951)
+|.|.-+..+-.+ -....-+..-+|=|+||.++|..|..
T Consensus 61 ~V~v~~~~~~~~~--~~~G~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 61 EMTIYIKQLGRRI--FAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp EEEEEETTTTEEE--EEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCEE--EEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 9999533111111 11234466778999999999998864
No 423
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=53.63 E-value=14 Score=38.83 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHhhcCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 706 dlL~~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+..+..++.+||=+|+| .|.++..+++..+ .+|+++| +++-++.+++
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~ 183 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK 183 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH
Confidence 55556678999999997 4788888887653 6999999 9988888865
No 424
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=53.43 E-value=13 Score=40.69 Aligned_cols=49 Identities=10% Similarity=-0.001 Sum_probs=38.2
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+..+..++.+||-+|||. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 445566789999999986 888888887542 1389999999998888753
No 425
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.01 E-value=25 Score=33.44 Aligned_cols=92 Identities=25% Similarity=0.255 Sum_probs=54.8
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeec-cccCCCCccccCCCCCceEEEeeec--CCceeeeccccccchHHHHHHHHHH
Q 002222 13 KMKLTPKAIIVQKFGRNAQFTVDEVQD-VVQNGCPGLAIPQKGPCLYRCSLQL--PEFSVVSETFKKKKDAEQSAAEKAL 89 (951)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~y~~~ev~~-~~~~~c~~~~~~q~~~~~~~c~l~l--p~~~v~~~~~~~kkdaeq~aa~~al 89 (951)
+.-+-||.++|+-+..-.. ..-+++ ..|.-|- |+-.=.|+|.| |+=--+.+.=+||-|||.-||-.|+
T Consensus 14 ~~Fp~PKnLL~~ViqrA~~--ss~~kd~l~~~~t~-------g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC 84 (119)
T 2db2_A 14 KEFPQPKNLLNSVIGRALG--ISHAKDKLVYVHTN-------GPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAAC 84 (119)
T ss_dssp TTCSCHHHHHHHHHHHHTT--HHHHHHHEEEEECC-------SSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHc--cCchhhheeEEeec-------CCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHH
Confidence 3445899999988765421 011111 1111122 22334677765 7743333445899999999998887
Q ss_pred HH---cCCCCCCCCCChHHHHHHHHHH
Q 002222 90 EK---LGIDPSPNVPSAEEAWDKLIAS 113 (951)
Q Consensus 90 ~k---lg~~~~~~~~~~~e~~~~l~~~ 113 (951)
+| ||.=...+.|-.-.-.+.+..|
T Consensus 85 ~kLK~Lgll~p~n~pl~hakY~~~~~~ 111 (119)
T 2db2_A 85 QLFKGWGLLGPRNELFDAAKYRVLADR 111 (119)
T ss_dssp HHHHHHTSSCTTCCCCCHHHHHHHHHT
T ss_pred HHHHHcCccCCCCCcchHHHHHHHHHh
Confidence 65 7886666777555555555554
No 426
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=51.59 E-value=48 Score=35.48 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 713 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 713 ~krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++|.=||+|. +.++..|++.+ ...+|+++|.+++.++.+.+. +. +.-...+..++ .
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G-~~~~V~~~dr~~~~~~~a~~~----------------G~--~~~~~~~~~~~--~ 91 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDL----------------GI--IDEGTTSIAKV--E 91 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHT----------------TS--CSEEESCTTGG--G
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHC----------------CC--cchhcCCHHHH--h
Confidence 47899999985 34556677776 113899999999888777531 11 00011232220 1
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEe
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIST 831 (951)
....|+|+.. +++.....+.+.+...++|+.+|+.+
T Consensus 92 ~~~aDvVila-----vp~~~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 92 DFSPDFVMLS-----SPVRTFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp GGCCSEEEEC-----SCGGGHHHHHHHHHHHSCTTCEEEEC
T ss_pred hccCCEEEEe-----CCHHHHHHHHHHHhhccCCCcEEEEC
Confidence 3457888754 33333344445688889999555543
No 427
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=51.50 E-value=14 Score=36.75 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=64.4
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002222 576 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 650 (951)
Q Consensus 576 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 650 (951)
+|-- |..|..|.|.|...|. +|+ .+++. ..++|.+ |.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 48 ~G~~~~~~gd~V~v~Y~g~l~-dG~----~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~--Ip~~laYG 118 (167)
T 1jvw_A 48 SGKRAPAIDDKCEVHYTGRLR-DGT----VFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRLF--IPYDLAYG 118 (167)
T ss_dssp CCSBCCCTTCCEEEEEEEECT-TSC----EEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEEC-CCC----EEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEE--ECchhhCC
Confidence 4666 9999999999999873 443 44443 5688877 58999999999999999999886 55543322
Q ss_pred hhccCcccchhcccccccccceeeeecccCCC
Q 002222 651 AAADDSARTFSLLSSRACCLEYHITLLRVTEP 682 (951)
Q Consensus 651 Aa~~~~~~DiSlL~~d~~~LEyyI~LL~v~ep 682 (951)
.... -..++-... +.|.|.++.+..+
T Consensus 119 ~~g~-----~~~Ipp~s~-LiF~VeL~~i~~~ 144 (167)
T 1jvw_A 119 VTGG-----GGMIPPYSP-LEFDVELISIKDG 144 (167)
T ss_dssp TTCS-----SSSSCTTCC-EEEEEEEEEEGGG
T ss_pred CCCC-----CCCcCCCCe-EEEEEEEEEEEcC
Confidence 1111 012344455 8888888876643
No 428
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=51.23 E-value=16 Score=32.19 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=48.2
Q ss_pred CCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcc
Q 002222 391 GSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPI 470 (951)
Q Consensus 391 g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~ 470 (951)
+.-|...|-.+|..+. ..|.|... . .. |......|.|+|.|- + +
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~--~--------------------------~~--Gp~h~~~F~~~v~v~----~-~ 50 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECE--R--------------------------SD--VQIHVPTFTFRVTVG----D-I 50 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEE--E--------------------------EE--CSSSSCEEEEEEEET----T-E
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEE--E--------------------------eE--CCCCCCeEEEEEEEC----C-E
Confidence 3468899999998887 57888764 0 01 222233499999983 2 1
Q ss_pred cccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 471 LECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 471 ~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
+ ....-+..-+|=|+||.++|..|.
T Consensus 51 ~---~~G~G~SKK~Aeq~AA~~aL~~L~ 75 (84)
T 2dix_A 51 T---CTGEGTSKKLAKHRAAEAAINILK 75 (84)
T ss_dssp E---EEECSSCTTHHHHHHHHHHHHHHH
T ss_pred E---EEeeeCCHHHHHHHHHHHHHHHHh
Confidence 1 234456777899999999999885
No 429
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=51.18 E-value=16 Score=39.43 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=38.7
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+.+..+..++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence 33444556788999999986 888888887542 1379999999999988864
No 430
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=50.51 E-value=73 Score=32.54 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=52.5
Q ss_pred EEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002222 715 TLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 715 rVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
+|.=||||. |. ++..|.+.+ .+|+++|.+++.++.+.+. +... .. ..+..+. .
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~----------------g~~~-~~-~~~~~~~----~ 56 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAVER----------------QLVD-EA-GQDLSLL----Q 56 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHT----------------TSCS-EE-ESCGGGG----T
T ss_pred EEEEEcCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHhC----------------CCCc-cc-cCCHHHh----C
Confidence 678899985 33 445566666 5899999999877765421 1100 11 2233222 4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
..|+|+.. +++.....+.+.+...++|+.+++++-
T Consensus 57 ~~D~vi~a-----v~~~~~~~~~~~l~~~~~~~~~vv~~~ 91 (279)
T 2f1k_A 57 TAKIIFLC-----TPIQLILPTLEKLIPHLSPTAIVTDVA 91 (279)
T ss_dssp TCSEEEEC-----SCHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred CCCEEEEE-----CCHHHHHHHHHHHHhhCCCCCEEEECC
Confidence 67887654 333344444556778889996666663
No 431
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=50.34 E-value=11 Score=33.76 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcc
Q 002222 391 GSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPI 470 (951)
Q Consensus 391 g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~ 470 (951)
|--|...|-.+|..+++..|.|.... .. |-.....|.|+|.|-. .+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~----------------------------~~--Gp~H~~~F~~~v~v~g----~~ 50 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLS----------------------------ER--GMPRRREFVMQVKVGN----EV 50 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEE----------------------------EE--SCSTTCEEEEEEEETT----EE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEE----------------------------eE--CCCCCCeEEEEEEECC----EE
Confidence 34588999999999999999997650 01 2222234999999842 11
Q ss_pred cccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 471 LECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 471 ~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
....=+...+|=|+||.++|.+|.
T Consensus 51 ----~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 51 ----ATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp ----EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred ----EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 223335567899999999999984
No 432
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=49.04 E-value=20 Score=34.43 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=56.8
Q ss_pred cCCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCcee
Q 002222 378 ELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVR 457 (951)
Q Consensus 378 ~lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 457 (951)
+.+..|..+..+...-|..+|-.+|..+.+..|.|.... . .....|.
T Consensus 12 ~~~~~~~r~~~~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~-----------------------------~----~H~~~F~ 58 (128)
T 1whn_A 12 KMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQ-----------------------------R----TIDRMFC 58 (128)
T ss_dssp EECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEE-----------------------------C----SSSCCEE
T ss_pred eeehhhhhhhcccCCCHHHHHHHHHHHcCCCCCeEEEEe-----------------------------e----cCCCcEE
Confidence 344445445555667899999999999999999987761 0 1123399
Q ss_pred EEEEEeeccCCcccccCchhhh-hhhhhhHhhhhhHHHHHHH
Q 002222 458 CEVKIFSKSRDPILECSPKEFY-KKQNESIENASLKVLSWLN 498 (951)
Q Consensus 458 c~v~~~s~~~~~~~~~~~~~~~-~~~~dai~~a~l~~l~~~~ 498 (951)
|+|.|-.+. + ....- +..-+|=|+||.++|.+|.
T Consensus 59 v~V~v~g~~------~-g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 59 SVVTVAEQK------Y-QSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp EEEEETTEE------E-EESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCEE------E-EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 999884321 2 12334 6777899999999999984
No 433
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=48.74 E-value=44 Score=37.84 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002222 713 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 713 ~krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
.++|+=+|||. |..+ ..|...+ ..|+.||.+++.++.+.+++ .+..++||+.+...
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~---~~v~vId~d~~~~~~~~~~~------------------~~~~i~Gd~~~~~~L 61 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGEN---NDITIVDKDGDRLRELQDKY------------------DLRVVNGHASHPDVL 61 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTT---EEEEEEESCHHHHHHHHHHS------------------SCEEEESCTTCHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHhc------------------CcEEEEEcCCCHHHH
Confidence 56888899884 4433 3344444 78999999999998876542 46788999987543
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002222 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
.-...|++++.-- +|....+.-.+++.+.+. ..+.-.-+.+|
T Consensus 62 ~~Agi~~ad~~ia~t~-----~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~ 107 (461)
T 4g65_A 62 HEAGAQDADMLVAVTN-----TDETNMAACQVAFTLFNTPNRIARIRSPQY 107 (461)
T ss_dssp HHHTTTTCSEEEECCS-----CHHHHHHHHHHHHHHHCCSSEEEECCCHHH
T ss_pred HhcCCCcCCEEEEEcC-----ChHHHHHHHHHHHHhcCCccceeEeccchh
Confidence 2456888876322 255455554566666565 44444444333
No 434
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=48.65 E-value=1.1e+02 Score=32.52 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcC------CCCCceEEEEe-----CCh----------------------HHHHHHHHHH
Q 002222 711 SCATTLVDFGCGSGSLLDSLLDY------PTALEKIVGVD-----ISQ----------------------KSLSRAAKII 757 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~------g~~~~qVVGVD-----ISe----------------------emLe~ArkrL 757 (951)
.-+..|+|+||-.|..+..++.. .+...+|+|+| ... +.++...+.
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~- 146 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA- 146 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH-
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH-
Confidence 34579999999999988775531 12347899999 321 111111110
Q ss_pred HhhhhcccccCCCCCC-CccEEEEEcccccc-C-----CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002222 758 HSKLSKKLDAAVPCTD-VKSAVLFDGSITVF-D-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 758 sa~ls~~~~~l~Pr~~-~~nVtf~qGDa~dL-p-----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
...... -+. ..+|+++.|++.+. + .+...||+|..-.= .....+..+ +.+...|+||.+|+
T Consensus 147 ~~~~~~-------~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~Y~~t~~~l-e~~~p~l~~GGvIv 214 (257)
T 3tos_A 147 HECSDF-------FGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---LYEPTKAVL-EAIRPYLTKGSIVA 214 (257)
T ss_dssp HHTTST-------TTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---CHHHHHHHH-HHHGGGEEEEEEEE
T ss_pred Hhhhhh-------cCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---ccchHHHHH-HHHHHHhCCCcEEE
Confidence 000000 012 26899999999763 2 12346999876442 232333344 46889999995554
No 435
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=47.85 E-value=1.8e+02 Score=31.66 Aligned_cols=160 Identities=11% Similarity=-0.008 Sum_probs=84.9
Q ss_pred CCCEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC------CCccEEEEEcc
Q 002222 712 CATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT------DVKSAVLFDGS 783 (951)
Q Consensus 712 k~krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~------~~~nVtf~qGD 783 (951)
...+|.=||+|+-. .+..++..| .+|+-+|++++.++.+.+++...+........-.. ...++++. .|
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G---~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~ 80 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGG---FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN 80 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence 35689999999643 345566777 79999999999999887776544332111100000 01133332 12
Q ss_pred ccccCCCCCCccEEEEccccccCch--hHHHHHHHHHHHccCCCEEEEEecC-CchhHHHHhhccCccCCCCchhhhhcc
Q 002222 784 ITVFDSRLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPRILIVSTPN-YEYNAILQKSSSTIQEDDPDEKTQLQS 860 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~d--D~l~~L~eeL~RvLKPGvLIISTPN-sEfN~lf~~L~~~~~~eYPde~~~~~~ 860 (951)
+.+ .....|+| +|-+++ +....+.+++-++++|+.++.|.-. ..-..+.... ..|.. .-.
T Consensus 81 l~~---a~~~ad~V-----iEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~------~~p~r---~ig 143 (319)
T 3ado_A 81 LAE---AVEGVVHI-----QECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGL------AHVKQ---CIV 143 (319)
T ss_dssp HHH---HTTTEEEE-----EECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTC------TTGGG---EEE
T ss_pred hHh---HhccCcEE-----eeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhc------cCCCc---EEE
Confidence 211 12345554 344442 2234444568889999855544333 2222222221 11111 111
Q ss_pred ccccCCCCc--------cccCHHHHHHHHHHHHHHcCcEE
Q 002222 861 CKFRNHDHK--------FEWTRDQFNCWATELAARHNYSV 892 (951)
Q Consensus 861 ~~fRh~DHk--------FEWTreEFqaWae~LA~r~GYsV 892 (951)
..|-+|-|. -.+|..+..+.+..++.+.|-..
T Consensus 144 ~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p 183 (319)
T 3ado_A 144 AHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP 183 (319)
T ss_dssp EEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred ecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence 233344443 34788888888889999888654
No 436
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=45.67 E-value=29 Score=37.17 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 755 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~-qVVGVDISeemLe~Ark 755 (951)
+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH
Confidence 445566788999999985 888888887543 5 89999999998888864
No 437
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=45.50 E-value=14 Score=33.10 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=48.5
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccc
Q 002222 392 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 471 (951)
Q Consensus 392 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 471 (951)
.-|+.+|-.+|..+++..|.|.... .. |......|.|+|.|-.+ +
T Consensus 16 ~d~Kt~LqE~~Qk~~~~~P~Y~~~~----------------------------~~--Gp~h~~~F~~~v~i~g~----~- 60 (89)
T 2cpn_A 16 CNPVGALQELVVQKGWRLPEYTVTQ----------------------------ES--GPAHRKEFTMTCRVERF----I- 60 (89)
T ss_dssp CCHHHHHHHHHHHHTCCCCEEEEEE----------------------------EE--CCSSSCEEEEEEEETTE----E-
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEe----------------------------eE--CCCCCCeEEEEEEECCE----E-
Confidence 3578999999999999999987650 01 22223349999998531 1
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 472 ECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 472 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
....=+..-+|=|+||.++|..|.
T Consensus 61 ---~~G~G~SKK~Aeq~AA~~AL~~L~ 84 (89)
T 2cpn_A 61 ---EIGSGTSKKLAKRNAAAKMLLRVS 84 (89)
T ss_dssp ---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ---EEeeeCCHHHHHHHHHHHHHHHHH
Confidence 123335567899999999999884
No 438
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=44.47 E-value=30 Score=36.70 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 344556788999999985 888888887653 699999999999988864
No 439
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=43.38 E-value=36 Score=35.45 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=58.2
Q ss_pred CEEEEEcCccc--hhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccccc---CCCC---CCCccEEEEEcccc
Q 002222 714 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA---AVPC---TDVKSAVLFDGSIT 785 (951)
Q Consensus 714 krVLDIGCGeG--~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~---l~Pr---~~~~nVtf~qGDa~ 785 (951)
++|.=||+|.- .++..+++.+ .+|+++|.+++.++.+.+.+.......... ..+. ....++... .|..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~ 80 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHG---FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-DDLA 80 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-SCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-CCHH
Confidence 57888999852 2445566776 799999999999988876543221110000 0000 000122321 2222
Q ss_pred ccCCCCCCccEEEEccccccCchh--HHHHHHHHHHHccCCCEEEEEe
Q 002222 786 VFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLEHL~dD--~l~~L~eeL~RvLKPGvLIIST 831 (951)
+ .....|+|+. .++++ ....+.+.+...++|+.++++.
T Consensus 81 ~---~~~~aDlVi~-----av~~~~~~~~~v~~~l~~~~~~~~il~s~ 120 (283)
T 4e12_A 81 Q---AVKDADLVIE-----AVPESLDLKRDIYTKLGELAPAKTIFATN 120 (283)
T ss_dssp H---HTTTCSEEEE-----CCCSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred H---HhccCCEEEE-----eccCcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 1245777754 34433 4445556688899999666653
No 440
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=42.82 E-value=67 Score=34.66 Aligned_cols=163 Identities=11% Similarity=-0.031 Sum_probs=81.6
Q ss_pred CCEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC------CCccEEEEEccc
Q 002222 713 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT------DVKSAVLFDGSI 784 (951)
Q Consensus 713 ~krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~------~~~nVtf~qGDa 784 (951)
.++|.=||+|. +.++..+++.+ .+|++.|++++.++.+.+++...+........-.+ ...++++. .|.
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~l~~l~~~G~~~g~~~~~~~~~~i~~~-~~~ 81 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGG---FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNL 81 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCccccccchHHHhhceEEe-CCH
Confidence 36889999995 33456677777 78999999999999887654332211100000000 01134432 222
Q ss_pred cccCCCCCCccEEEEccccccCchh--HHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhhhcccc
Q 002222 785 TVFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCK 862 (951)
Q Consensus 785 ~dLp~~d~sFDlVVcieVLEHL~dD--~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~ 862 (951)
.+ .....|+|+.. ++++ ....+.+.+...++|+.+++++-..-....+..... .|..- -...
T Consensus 82 ~e---av~~aDlViea-----vpe~~~~k~~v~~~l~~~~~~~~Ii~s~tS~i~~~~la~~~~-----~~~r~---ig~H 145 (319)
T 2dpo_A 82 AE---AVEGVVHIQEC-----VPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLA-----HVKQC---IVAH 145 (319)
T ss_dssp HH---HTTTEEEEEEC-----CCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCT-----TGGGE---EEEE
T ss_pred HH---HHhcCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCeEEEEeCCChHHHHHHHhcC-----CCCCe---EEee
Confidence 21 13456776543 3422 233444568889999955554332211112221100 00000 0011
Q ss_pred ccCCCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002222 863 FRNHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 863 fRh~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
+-++-|. ...+..+..+.+..+....|-.+...
T Consensus 146 p~~P~~~~~lveiv~g~~t~~e~~~~~~~l~~~lGk~~v~v 186 (319)
T 2dpo_A 146 PVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRV 186 (319)
T ss_dssp ECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCchhhcceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 1122221 12455666667788999999877654
No 441
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=41.82 E-value=1.7e+02 Score=29.40 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCc----cch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002222 711 SCATTLVDFGCG----SGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 711 ~k~krVLDIGCG----eG~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
..++++|=.|++ -|. ++..|++.+ .+|+.+|.++...+.+.+.... ....++.++++|+.
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~ 69 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFTYAGERLEKSVHELAGT------------LDRNDSIILPCDVT 69 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHT------------SSSCCCEEEECCCS
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEecCchHHHHHHHHHHHh------------cCCCCceEEeCCCC
Confidence 356889999976 333 457778887 7899999887655555443321 12236889999998
Q ss_pred ccCC----------CCCCccEEEEccc
Q 002222 786 VFDS----------RLHGFDIGTCLEV 802 (951)
Q Consensus 786 dLp~----------~d~sFDlVVcieV 802 (951)
+... ..+..|+++..-.
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 70 NDAEIETCFASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp SSHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCeeEEEEccc
Confidence 7542 1246899887644
No 442
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=41.78 E-value=65 Score=36.42 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=57.7
Q ss_pred CCEEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccccc--CCCCC-CCccEEEEEcccccc
Q 002222 713 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVPCT-DVKSAVLFDGSITVF 787 (951)
Q Consensus 713 ~krVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~--l~Pr~-~~~nVtf~qGDa~dL 787 (951)
.++|.=||+|. |. ++..+++.+ .+|+++|++++.++.+++.+...+...... ..+.. ......+ ..|..
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G---~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~-- 110 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVG---ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK-- 110 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH--
Confidence 35799999997 33 455666766 799999999999888766433211000000 00000 0111222 33432
Q ss_pred CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002222 788 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 788 p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
.....|+|+..-. +.+ +....+.+.+...++|+.++++
T Consensus 111 --~~~~aDlVIeaVp-e~~--~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 111 --ELSTVDLVVEAVF-EDM--NLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp --GGTTCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --HHCCCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCeEEEe
Confidence 2346788765432 211 1223444568888999955554
No 443
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=39.26 E-value=41 Score=36.49 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=37.6
Q ss_pred HhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 707 HIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 707 lL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA 228 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH
Confidence 44556788999999975 888888887543 1379999999999988854
No 444
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=38.50 E-value=67 Score=34.62 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=34.2
Q ss_pred CCCEEEEEc-Cc-cchhHHHHhcC-CCCCceEEEEeCChHHHHHHHH
Q 002222 712 CATTLVDFG-CG-SGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 712 k~krVLDIG-CG-eG~ll~~LAk~-g~~~~qVVGVDISeemLe~Ark 755 (951)
++.+||=+| +| .|.++..+++. ++ .+|+++|.+++-++.+++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g--~~Vi~~~~~~~~~~~~~~ 215 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTD--LTVIATASRPETQEWVKS 215 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHH
Confidence 567999998 55 58888888885 43 799999999998888854
No 445
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=38.45 E-value=77 Score=32.06 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 711 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 711 ~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
..++++|=.|++.|. ++..|++.+ .+|+.+|.+.+.++...+.+. .++.++++|+.+.
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~~ 66 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREG---ATVAIADIDIERARQAAAEIG----------------PAAYAVQMDVTRQ 66 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC----------------TTEEEEECCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhC----------------CCceEEEeeCCCH
Confidence 467889999977653 456777877 799999999887776655431 2578888998764
Q ss_pred CC----------CCCCccEEEEcccc
Q 002222 788 DS----------RLHGFDIGTCLEVI 803 (951)
Q Consensus 788 p~----------~d~sFDlVVcieVL 803 (951)
.. ..+..|+++.+-.+
T Consensus 67 ~~v~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 67 DSIDAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 32 12478999986543
No 446
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=38.24 E-value=41 Score=36.28 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=34.3
Q ss_pred hhcC-CCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 708 IKES-CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 708 L~~~-k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
.... ++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~ 229 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALK 229 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHH
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3444 778999999873 667777776543 689999999988777653
No 447
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=37.95 E-value=1.3e+02 Score=31.59 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=51.8
Q ss_pred cCCCCEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 710 ESCATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 710 ~~k~krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
...+++|+=||+|. |... ..+...+ .+|+++|.+.+..+.+.+ + .+.... ..++
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~dr~~~~~~~~~~-~------------------g~~~~~--~~~l 207 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALG---AKVKVGARESDLLARIAE-M------------------GMEPFH--ISKA 207 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-T------------------TSEEEE--GGGH
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHH-C------------------CCeecC--hhhH
Confidence 45788999999984 3333 3344455 699999999876544421 1 112211 1122
Q ss_pred CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 788 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 788 p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
.......|+|+..--.+.+. + ..+..++||.++|.+-
T Consensus 208 ~~~l~~aDvVi~~~p~~~i~-~-------~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 208 AQELRDVDVCINTIPALVVT-A-------NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp HHHTTTCSEEEECCSSCCBC-H-------HHHHHSCTTCEEEECS
T ss_pred HHHhcCCCEEEECCChHHhC-H-------HHHHhcCCCCEEEEec
Confidence 22245789988765443333 2 2445689995555443
No 448
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=37.91 E-value=48 Score=35.61 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 701 VEYALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+..+.+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 178 ~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 178 WFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp HHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH
Confidence 33444455566789999999885 777777777653 699999999998888764
No 449
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=37.01 E-value=48 Score=35.34 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=37.3
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+..+..++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 444556788999999875 777777777543 679999999998888864
No 450
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=36.10 E-value=2.2e+02 Score=29.09 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=51.1
Q ss_pred CEEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002222 714 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 714 krVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++|.=||+|. |. ++..|++.+ ...+|+++|.+++.++.+++. +... .. ..+..+ ..
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g-~~~~V~~~d~~~~~~~~~~~~----------------g~~~-~~-~~~~~~---~~ 59 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDL----------------GIID-EG-TTSIAK---VE 59 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHT----------------TSCS-EE-ESCGGG---GG
T ss_pred cEEEEEecCHHHHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHC----------------CCcc-cc-cCCHHH---Hh
Confidence 3688899985 33 345566655 113899999999887766431 1100 11 122211 12
Q ss_pred C-CccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEe
Q 002222 792 H-GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 792 ~-sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIST 831 (951)
. ..|+|+.. +++.....+.+.+...++++.+|+.+
T Consensus 60 ~~~aDvVila-----vp~~~~~~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 60 DFSPDFVMLS-----SPVRTFREIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp GTCCSEEEEC-----SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred cCCCCEEEEc-----CCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 3 67887653 44344444445677788998555543
No 451
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=36.03 E-value=1.5e+02 Score=30.67 Aligned_cols=87 Identities=14% Similarity=0.285 Sum_probs=52.7
Q ss_pred CEEEEEcC-cc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 714 TTLVDFGC-GS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 714 krVLDIGC-Ge-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+|.=||+ |. |. ++..|++.+ .+|+++|.+++.++.+.+ . + +.. .+. ...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~-~---------------g---~~~--~~~---~~~ 64 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA---HHLAAIEIAPEGRDRLQG-M---------------G---IPL--TDG---DGW 64 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS---SEEEEECCSHHHHHHHHH-T---------------T---CCC--CCS---SGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHh-c---------------C---CCc--CCH---HHH
Confidence 58999999 85 33 445666666 689999999887766543 1 1 111 121 112
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
....|+|+.. ++++....+.+.+...++|+.+++++-
T Consensus 65 ~~~aDvVi~a-----v~~~~~~~v~~~l~~~l~~~~ivv~~s 101 (286)
T 3c24_A 65 IDEADVVVLA-----LPDNIIEKVAEDIVPRVRPGTIVLILD 101 (286)
T ss_dssp GGTCSEEEEC-----SCHHHHHHHHHHHGGGSCTTCEEEESC
T ss_pred hcCCCEEEEc-----CCchHHHHHHHHHHHhCCCCCEEEECC
Confidence 2467887654 333444455556777888886666543
No 452
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=35.63 E-value=39 Score=35.64 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=36.2
Q ss_pred HHHHhhcCCCCEEEEEcC--ccchhHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 754 (951)
Q Consensus 704 VldlL~~~k~krVLDIGC--GeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ar 754 (951)
+.+..+..++++||-.|+ |.|..+..+++..+ .+|+++|.+++.++.++
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~ 187 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLK 187 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 334445567889999998 57777766665432 69999999998888773
No 453
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=34.89 E-value=93 Score=30.94 Aligned_cols=75 Identities=17% Similarity=0.072 Sum_probs=53.0
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++++|=.|++.|. ++..|++.+ .+|+.+|.+++.++...+.+.. ...++.++++|+.+..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKG---ATVVGTATSQASAEKFENSMKE-------------KGFKARGLVLNISDIE 67 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEecCCCHH
Confidence 46788888876553 456777777 7999999999888777665532 1236889999987643
Q ss_pred C----------CCCCccEEEEccc
Q 002222 789 S----------RLHGFDIGTCLEV 802 (951)
Q Consensus 789 ~----------~d~sFDlVVcieV 802 (951)
. ..+..|+++.+-.
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAG 91 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 2346899987644
No 454
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=34.72 E-value=84 Score=33.04 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=52.5
Q ss_pred cCCCCEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 710 ESCATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 710 ~~k~krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
...+++|+=||+|. |... ..+...+ .+|+++|.+.+..+.+.+ + .++... ..++
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~d~~~~~~~~~~~-~------------------g~~~~~--~~~l 209 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALG---ANVKVGARSSAHLARITE-M------------------GLVPFH--TDEL 209 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-T------------------TCEEEE--GGGH
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHH-C------------------CCeEEc--hhhH
Confidence 35788999999984 3333 3344455 699999999865544322 0 112211 1122
Q ss_pred CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002222 788 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 788 p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
+......|+|+..--.+.+. + ..+..+|||.++|.+-
T Consensus 210 ~~~l~~aDvVi~~~p~~~i~-~-------~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 210 KEHVKDIDICINTIPSMILN-Q-------TVLSSMTPKTLILDLA 246 (300)
T ss_dssp HHHSTTCSEEEECCSSCCBC-H-------HHHTTSCTTCEEEECS
T ss_pred HHHhhCCCEEEECCChhhhC-H-------HHHHhCCCCCEEEEEe
Confidence 22235789998765553333 2 2456789996555543
No 455
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=34.12 E-value=95 Score=31.55 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=54.6
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-
Q 002222 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 787 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL- 787 (951)
.+++||=.|++.|. ++..|++.+ .+|++++.+.+.++.+.+.+.. ....++.++.+|+.+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dl~~~~ 75 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTKGHEAVEKLKN------------SNHENVVFHQLDVTDPI 75 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TTCCSEEEEECCTTSCH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------cCCCceEEEEccCCCcH
Confidence 56789988987653 456677777 7999999999888777665542 1234789999999875
Q ss_pred CC----------CCCCccEEEEcccc
Q 002222 788 DS----------RLHGFDIGTCLEVI 803 (951)
Q Consensus 788 p~----------~d~sFDlVVcieVL 803 (951)
.. ..+..|+++.+-.+
T Consensus 76 ~~v~~~~~~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 76 ATMSSLADFIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 21 12479999987544
No 456
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=34.08 E-value=86 Score=31.22 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=52.2
Q ss_pred cCCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002222 710 ESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
..++++||=.|++.|. ++..|++.+ .+|+.+|.+.+.++...+.+. .++.+..+|+.+
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~ 71 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLG---SKVIISGSNEEKLKSLGNALK----------------DNYTIEVCNLAN 71 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC----------------SSEEEEECCTTS
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhc----------------cCccEEEcCCCC
Confidence 3467899999987653 456677777 799999999988777655431 267888888876
Q ss_pred cCC------CCCCccEEEEcccc
Q 002222 787 FDS------RLHGFDIGTCLEVI 803 (951)
Q Consensus 787 Lp~------~d~sFDlVVcieVL 803 (951)
... .....|+++.+-.+
T Consensus 72 ~~~~~~~~~~~~~id~li~~Ag~ 94 (249)
T 3f9i_A 72 KEECSNLISKTSNLDILVCNAGI 94 (249)
T ss_dssp HHHHHHHHHTCSCCSEEEECCC-
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 431 22468999876543
No 457
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=34.05 E-value=42 Score=36.84 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHh-cCCCCCceEEEEeCChHHHHHHHHH
Q 002222 711 SCATTLVDFGCGS-GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll~~LA-k~g~~~~qVVGVDISeemLe~Arkr 756 (951)
..+++|+=+|+|. |..+..++ ..+ .+|+++|.+++.++.+++.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~G---a~V~~~d~~~~~l~~~~~~ 210 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMG---ATVTVLDINIDKLRQLDAE 210 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHh
Confidence 4678999999973 44443333 344 6899999999888777553
No 458
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=33.97 E-value=87 Score=33.34 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=38.8
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 555666788999999985 788888888753 2389999999998888865
No 459
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=33.91 E-value=81 Score=31.04 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCc--cch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE-EEEEcccc-
Q 002222 711 SCATTLVDFGCG--SGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSIT- 785 (951)
Q Consensus 711 ~k~krVLDIGCG--eG~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV-tf~qGDa~- 785 (951)
..+++||=.|+. -|. ++..|++.+ .+|++++-++..++.... .++ .++.+|+.
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~-------------------~~~~~~~~~Dl~~ 76 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQGPELRE-------------------RGASDIVVANLEE 76 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH-------------------TTCSEEEECCTTS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHHHHHHHh-------------------CCCceEEEcccHH
Confidence 367899999963 233 334556666 799999998875544321 156 88888886
Q ss_pred ccCCCCCCccEEEEccccc
Q 002222 786 VFDSRLHGFDIGTCLEVIE 804 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLE 804 (951)
.+.....++|+|+..-...
T Consensus 77 ~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 77 DFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp CCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEECCCCC
Confidence 2222346799999875543
No 460
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=33.29 E-value=1.1e+02 Score=30.49 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=54.7
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++++|=.|++.|. ++..|++.+ .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG---AAVVVADINAEAAEAVAKQIVA-------------DGGTAISVAVDVSDPE 71 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCEEEEEECCTTSHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHH
Confidence 56889999987653 456777777 7899999999888877665532 1236888999998753
Q ss_pred C----------CCCCccEEEEcccc
Q 002222 789 S----------RLHGFDIGTCLEVI 803 (951)
Q Consensus 789 ~----------~d~sFDlVVcieVL 803 (951)
. ..+..|+++.+-.+
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2 12478999886543
No 461
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=33.17 E-value=1.2e+02 Score=30.59 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=55.4
Q ss_pred CCCCEEEEEcC-ccc--h-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002222 711 SCATTLVDFGC-GSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 711 ~k~krVLDIGC-GeG--~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
..++++|=.|. |.| . ++..|++.+ .+|+.+|.+.+.++...+.+.. ....++.++.+|+.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dl~~ 84 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG---ADVVISDYHERRLGETRDQLAD------------LGLGRVEAVVCDVTS 84 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TCSSCEEEEECCTTC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHHHh------------cCCCceEEEEeCCCC
Confidence 35788999997 554 3 456777887 7899999999888877666532 123478999999987
Q ss_pred cCC----------CCCCccEEEEcccc
Q 002222 787 FDS----------RLHGFDIGTCLEVI 803 (951)
Q Consensus 787 Lp~----------~d~sFDlVVcieVL 803 (951)
... ..+..|+++.+-.+
T Consensus 85 ~~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 85 TEAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 532 12468999886543
No 462
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=32.91 E-value=92 Score=32.76 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=54.4
Q ss_pred CEEEEEcCcc-ch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC--ccEEEEEccccccCC
Q 002222 714 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFDS 789 (951)
Q Consensus 714 krVLDIGCGe-G~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~--~nVtf~qGDa~dLp~ 789 (951)
++|.=||+|. |. ++..|++.+ .+|+++|.+++.++..++...-.... .... .++.....+..+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--- 71 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKG---QSVLAWDIDAQRIKEIQDRGAIIAEG-------PGLAGTAHPDLLTSDIGL--- 71 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHTSEEEES-------SSCCEEECCSEEESCHHH---
T ss_pred CeEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcCCeEEec-------cccccccccceecCCHHH---
Confidence 5899999986 33 445666666 68999999998777665431000000 0000 000001112111
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
....+|+|+..--- .....+.+.+...++++.+++..++
T Consensus 72 ~~~~~D~vi~~v~~-----~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 72 AVKDADVILIVVPA-----IHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp HHTTCSEEEECSCG-----GGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred HHhcCCEEEEeCCc-----hHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 12468887654321 2222333567888999966666666
No 463
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=32.71 E-value=39 Score=36.36 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~-qVVGVDISeemLe~Ark 755 (951)
+.+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH
Confidence 33444556788999999874 777777777543 4 89999999998888864
No 464
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=32.65 E-value=26 Score=33.92 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=33.7
Q ss_pred HHhhcCCCCEEEEEcC--ccchhHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002222 706 QHIKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 754 (951)
Q Consensus 706 dlL~~~k~krVLDIGC--GeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ar 754 (951)
+.....++++||..|+ |.|..+..+++..+ .+|+++|.+++.++.++
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS 80 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 3344557789999994 56777666665432 68999999998777664
No 465
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=32.52 E-value=2.2e+02 Score=29.04 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCCEEEEEcCccchhH----HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE-Eccccc
Q 002222 712 CATTLVDFGCGSGSLL----DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF-DGSITV 786 (951)
Q Consensus 712 k~krVLDIGCGeG~ll----~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~-qGDa~d 786 (951)
.+++||=.|+. |..+ ..|++.+ .+|++++.+....+...+.+... ...+++++ .+|+.+
T Consensus 10 ~~~~vlVTGat-G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~d 73 (342)
T 1y1p_A 10 EGSLVLVTGAN-GFVASHVVEQLLEHG---YKVRGTARSASKLANLQKRWDAK------------YPGRFETAVVEDMLK 73 (342)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHH------------STTTEEEEECSCTTS
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHCC---CEEEEEeCCcccHHHHHHHhhcc------------CCCceEEEEecCCcC
Confidence 56789999863 4433 4455666 79999999877655443332210 01368888 789876
Q ss_pred cCC---CCCCccEEEEccccccC
Q 002222 787 FDS---RLHGFDIGTCLEVIEHM 806 (951)
Q Consensus 787 Lp~---~d~sFDlVVcieVLEHL 806 (951)
... ....+|+|+..-...+.
T Consensus 74 ~~~~~~~~~~~d~vih~A~~~~~ 96 (342)
T 1y1p_A 74 QGAYDEVIKGAAGVAHIASVVSF 96 (342)
T ss_dssp TTTTTTTTTTCSEEEECCCCCSC
T ss_pred hHHHHHHHcCCCEEEEeCCCCCC
Confidence 542 23478999987654443
No 466
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=32.39 E-value=45 Score=36.10 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=36.7
Q ss_pred hhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 708 IKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 708 L~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3556788999999985 777778877543 689999999998888864
No 467
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=32.19 E-value=65 Score=35.05 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCCEEEEEcCc-cchhHHHHh-cCCCCCceEEEEeCChHHHHHHHHH
Q 002222 712 CATTLVDFGCG-SGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 712 k~krVLDIGCG-eG~ll~~LA-k~g~~~~qVVGVDISeemLe~Arkr 756 (951)
++++|+=+|+| .|..+..++ ..+ .+|+++|.+++-++.+++.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G---a~V~v~dr~~~r~~~~~~~ 209 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG---AQVQIFDINVERLSYLETL 209 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHh
Confidence 45899999997 344444444 444 5899999999888877654
No 468
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=32.05 E-value=72 Score=35.23 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=61.0
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCc---cchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002222 578 IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 654 (951)
Q Consensus 578 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a---~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 654 (951)
-.|..|+.|.+.|+..| +| .+.+++ +++|.+|.|. ++.-++..+..|..|..+.+. ++|.- +-+
T Consensus 160 ~~p~~g~~V~v~y~g~~--~g----~~f~~~-~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~--i~P~~----ay~ 226 (457)
T 1kt0_A 160 SNPNEGATVEIHLEGRC--GG----RMFDCR-DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILY--LGPRY----GFG 226 (457)
T ss_dssp CCCCTTCEEEEEEEEEE--TT----EEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEE--ECGGG----TTC
T ss_pred CCCCCCCEEEEEEEEEe--CC----eEEecC-ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEE--ECccc----ccC
Confidence 46999999999999988 55 245553 5999999775 788999999999999987765 45542 222
Q ss_pred CcccchhcccccccccceeeeecccCCCh
Q 002222 655 DSARTFSLLSSRACCLEYHITLLRVTEPP 683 (951)
Q Consensus 655 ~~~~DiSlL~~d~~~LEyyI~LL~v~ep~ 683 (951)
........++.... +.|++.+....++.
T Consensus 227 ~~g~~~~~ip~~~~-l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 227 EAGKPKFGIEPNAE-LIYEVTLKSFEKAK 254 (457)
T ss_dssp SSCBGGGTBCTTCC-EEEEEEEEEEECCC
T ss_pred CCCCcccCCCCCCE-EEEEhhhhhcccCc
Confidence 22221112333333 66666666544433
No 469
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=31.82 E-value=1.7e+02 Score=29.68 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=53.7
Q ss_pred CCEEEEEcCcc-ch-hHHHHhcCCCCCce-EEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 713 ATTLVDFGCGS-GS-LLDSLLDYPTALEK-IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 713 ~krVLDIGCGe-G~-ll~~LAk~g~~~~q-VVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..+|.=||||. |. ++..|++.+ .+ |+++|.+++.++...+.+ .+.. ..+..+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g---~~~v~~~~~~~~~~~~~~~~~------------------g~~~-~~~~~~~-- 65 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKG---FRIVQVYSRTEESARELAQKV------------------EAEY-TTDLAEV-- 65 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHT---CCEEEEECSSHHHHHHHHHHT------------------TCEE-ESCGGGS--
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC---CeEEEEEeCCHHHHHHHHHHc------------------CCce-eCCHHHH--
Confidence 35799999984 33 334555555 45 899999998877665431 1222 1233222
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCC
Q 002222 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 834 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNs 834 (951)
....|+|+.. ++++....+.+.+...+++|.+++++-+.
T Consensus 66 -~~~~Dvvi~a-----v~~~~~~~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 66 -NPYAKLYIVS-----LKDSAFAELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp -CSCCSEEEEC-----CCHHHHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred -hcCCCEEEEe-----cCHHHHHHHHHHHHhhcCCCcEEEECCCC
Confidence 2357887654 33333344445577778889666665543
No 470
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=31.80 E-value=1.2e+02 Score=32.47 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=30.6
Q ss_pred CCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCCh---HHHHHHHH
Q 002222 713 ATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQ---KSLSRAAK 755 (951)
Q Consensus 713 ~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISe---emLe~Ark 755 (951)
+++||-+|+|. |..+..+++..+ .+|+++|.++ +-++.+++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~ 225 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEE 225 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHH
Confidence 88999999853 666666665443 6999999988 77777653
No 471
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=31.77 E-value=41 Score=36.17 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~-qVVGVDISeemLe~Ark 755 (951)
+.+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH
Confidence 33444556788999999875 777777777543 4 89999999998888854
No 472
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=31.67 E-value=1.2e+02 Score=31.33 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=54.7
Q ss_pred HhhcCCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002222 707 HIKESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 707 lL~~~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDI-SeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
+.....++++|=.|++.|. ++..|++.+ .+|+.+|. +++.++...+.+.. ...++.++++
T Consensus 23 mm~~~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 86 (280)
T 4da9_A 23 MMTQKARPVAIVTGGRRGIGLGIARALAASG---FDIAITGIGDAEGVAPVIAELSG-------------LGARVIFLRA 86 (280)
T ss_dssp CCSCCCCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCHHHHHHHHHHHHH-------------TTCCEEEEEC
T ss_pred hhhccCCCEEEEecCCCHHHHHHHHHHHHCC---CeEEEEeCCCHHHHHHHHHHHHh-------------cCCcEEEEEe
Confidence 3344567899999987664 456777877 79999996 66666665554432 1237889999
Q ss_pred cccccCC----------CCCCccEEEEcccc
Q 002222 783 SITVFDS----------RLHGFDIGTCLEVI 803 (951)
Q Consensus 783 Da~dLp~----------~d~sFDlVVcieVL 803 (951)
|+.+... ..+..|+++.+-.+
T Consensus 87 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 87 DLADLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp CTTSGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 9987542 12478999876543
No 473
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=31.07 E-value=1e+02 Score=31.16 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=51.4
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++++|=.|.+.|. ++..|++.+ .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 71 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKELNDCLTQWRS-------------KGFKVEASVCDLSSRS 71 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCEEEEEECCTTCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEcCCCCHH
Confidence 56789999976553 345667777 7999999998877765554431 1136888899987643
Q ss_pred C----------CC-CCccEEEEccc
Q 002222 789 S----------RL-HGFDIGTCLEV 802 (951)
Q Consensus 789 ~----------~d-~sFDlVVcieV 802 (951)
. .. +..|+++.+-.
T Consensus 72 ~~~~~~~~~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 72 ERQELMNTVANHFHGKLNILVNNAG 96 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCC
Confidence 1 11 57899988654
No 474
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=30.98 E-value=71 Score=33.40 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.3
Q ss_pred EEEEEcC--ccchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 715 TLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 715 rVLDIGC--GeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+||=+|+ |.|.++..+++..+ .+|+++|.+++-++.+++
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~ 189 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS 189 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh
Confidence 4999997 57888888887654 699999999998888865
No 475
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=30.45 E-value=37 Score=36.58 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+.+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence 33444556788999999874 777777777542 1389999999998888864
No 476
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=30.32 E-value=39 Score=30.70 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=45.8
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcccc
Q 002222 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 472 (951)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 472 (951)
-|+..|-.+|..+++. |.|... . .. |......|.|+|.|-.+.
T Consensus 15 n~Kt~LqE~~Q~~~~~-p~Y~~~--~--------------------------~~--Gp~H~~~F~v~v~i~g~~------ 57 (97)
T 1x49_A 15 FYMDKLNKYRQMHGVA-ITYKEL--S--------------------------TS--GPPHDRRFTFQVLIDEKE------ 57 (97)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEE--E--------------------------EE--SCSSSCEEEEEEEESSCC------
T ss_pred CHHHHHHHHHHHcCCC-CeEEEE--E--------------------------ee--CCCCCCcEEEEEEECCEE------
Confidence 4788999999998885 877654 0 01 222234499999984321
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 473 CSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 473 ~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
+ ....-+..-+|=|+||.++|..|.
T Consensus 58 ~-~~G~G~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 58 F-PEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp C-CCEEESSHHHHHHHHHHHHHHHHT
T ss_pred E-EEEeeCCHHHHHHHHHHHHHHHHH
Confidence 1 233446667899999999998774
No 477
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=30.23 E-value=45 Score=35.95 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~-qVVGVDISeemLe~Ark 755 (951)
+.+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~ 238 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKA 238 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH
Confidence 33444556788999999874 777777777543 5 89999999998888854
No 478
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=30.05 E-value=62 Score=34.56 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCce-EEEEeCChHHHHHHHHH
Q 002222 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEK-IVGVDISQKSLSRAAKI 756 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~q-VVGVDISeemLe~Arkr 756 (951)
+.....++.+||=+|+|. |.++..+++..+ .+ |+++|.+++-++.+++.
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh
Confidence 455566788999999975 778888887653 44 99999999999988764
No 479
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=29.89 E-value=1.2e+02 Score=30.04 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE-EEEEccccc
Q 002222 711 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITV 786 (951)
Q Consensus 711 ~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV-tf~qGDa~d 786 (951)
..++++|=.|++.|. ++..|++.+ .+|+++|.+++.++...+.+. .++ .++.+|+.+
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~~D~~~ 69 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG---ARLILIDREAAALDRAAQELG----------------AAVAARIVADVTD 69 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHG----------------GGEEEEEECCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhc----------------ccceeEEEEecCC
Confidence 356789999976542 345666777 789999999877665544331 145 788888876
Q ss_pred cCCC---------CCCccEEEEccc
Q 002222 787 FDSR---------LHGFDIGTCLEV 802 (951)
Q Consensus 787 Lp~~---------d~sFDlVVcieV 802 (951)
...- .+.+|+++..-.
T Consensus 70 ~~~~~~~~~~~~~~~~id~li~~Ag 94 (254)
T 2wsb_A 70 AEAMTAAAAEAEAVAPVSILVNSAG 94 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHhhCCCcEEEECCc
Confidence 4321 146899988654
No 480
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=29.83 E-value=1.8e+02 Score=28.63 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 713 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 713 ~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
++++|=.|++.|. ++..|++.+ .+|+.+|.++..++...+.+.. ....++.++.+|+.+...
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG---DRVAALDLSAETLEETARTHWH------------AYADKVLRVRADVADEGD 66 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHST------------TTGGGEEEEECCTTCHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------hcCCcEEEEEecCCCHHH
Confidence 4678888865432 345666777 7899999998777665444310 112368899999876432
Q ss_pred ----------CCCCccEEEEccc
Q 002222 790 ----------RLHGFDIGTCLEV 802 (951)
Q Consensus 790 ----------~d~sFDlVVcieV 802 (951)
..+.+|+++.+-.
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag 89 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAG 89 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 1137899988653
No 481
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=29.75 E-value=41 Score=34.13 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=51.4
Q ss_pred CEEEEEcCccc--hhHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002222 714 TTLVDFGCGSG--SLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 714 krVLDIGCGeG--~ll~~LAk~g~-~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
++|.=||||.- .++..|++.+. +..+|++.|.+++.++..++.+ .+.. ..+..+.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------------------g~~~-~~~~~e~--- 60 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------------------GLTT-TTDNNEV--- 60 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------------------CCEE-CSCHHHH---
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------------------CCEE-eCChHHH---
Confidence 46888999953 34556666651 1138999999998877765432 1111 1121111
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCC
Q 002222 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 834 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNs 834 (951)
....|+|+..- ++.....+.+.+...++|+.++++..+.
T Consensus 61 ~~~aDvVilav-----~~~~~~~v~~~l~~~l~~~~~vvs~~~g 99 (247)
T 3gt0_A 61 AKNADILILSI-----KPDLYASIINEIKEIIKNDAIIVTIAAG 99 (247)
T ss_dssp HHHCSEEEECS-----CTTTHHHHC---CCSSCTTCEEEECSCC
T ss_pred HHhCCEEEEEe-----CHHHHHHHHHHHHhhcCCCCEEEEecCC
Confidence 12468776543 2233334445577778888666665543
No 482
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=29.59 E-value=69 Score=34.88 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCcc-chhHHH-HhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 711 SCATTLVDFGCGS-GSLLDS-LLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll~~-LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
..+++|+=+|+|. |..+.. +...+ .+|+++|.+++.++.+.+
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~G---a~V~~~d~~~~~~~~~~~ 207 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMG---AQVTILDVNHKRLQYLDD 207 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHH
Confidence 4568999999963 443333 33455 699999999987777654
No 483
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=29.57 E-value=16 Score=39.63 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002222 712 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 754 (951)
Q Consensus 712 k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~Ar 754 (951)
+.++||=+||| .|......+... .+|+..|++.+.++.++
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~---~~v~~~~~~~~~~~~~~ 55 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE---FDVYIGDVNNENLEKVK 55 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHT
T ss_pred CccEEEEECCCHHHHHHHHHHhcC---CCeEEEEcCHHHHHHHh
Confidence 45789999996 455543333333 68999999988777663
No 484
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=29.50 E-value=41 Score=37.55 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=49.5
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhc--cccceEEEeccCccchhhhhhhhhccccccceecccCC
Q 002222 580 PSNGCLSFISYSVSLVIEGETMKELLE--SREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP 644 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e--~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~ 644 (951)
+..|..+.|.|+..+ +|+. ++ ....|.|++|.|.+++-++.-+..|.+|....|....|
T Consensus 161 ~~~gD~V~i~y~g~~--dG~~----fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp 221 (392)
T 1t11_A 161 AENGKRVSIDFVGSI--DGVE----FEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFP 221 (392)
T ss_dssp CCTTCEEEEEEEEES--SSSC----CTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECC
T ss_pred CCCCCEEEEEEEEEE--CCEE----ccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCc
Confidence 689999999999883 5653 34 24689999999999999999999999999998885543
No 485
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=29.35 E-value=17 Score=40.69 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCEEEEEcCcc-chhHHHHh-cCCCCCceEEEEeCChHHHHHHHH
Q 002222 712 CATTLVDFGCGS-GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 712 k~krVLDIGCGe-G~ll~~LA-k~g~~~~qVVGVDISeemLe~Ark 755 (951)
++.+|+=+|+|. |..+..++ ..+ .+|+++|.+++-++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG---a~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG---AKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT---CEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH
Confidence 678999999994 44444444 444 689999999987777754
No 486
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=29.14 E-value=1.1e+02 Score=31.14 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 711 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 711 ~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
..++++|=.|++.|. ++..|++.+ .+|+.+|.+++.++...+.+.. ...++.++.+|+.+.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~ 82 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKELDECLEIWRE-------------KGLNVEGSVCDLLSR 82 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEECCCCCH
Confidence 356889999976553 345667777 7899999998877766554431 113688889998764
Q ss_pred CC----------CC-CCccEEEEcccc
Q 002222 788 DS----------RL-HGFDIGTCLEVI 803 (951)
Q Consensus 788 p~----------~d-~sFDlVVcieVL 803 (951)
.. .. +..|+++.+-.+
T Consensus 83 ~~~~~~~~~~~~~~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 83 TERDKLMQTVAHVFDGKLNILVNNAGV 109 (273)
T ss_dssp HHHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 31 11 678999886543
No 487
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=29.05 E-value=2.1e+02 Score=32.38 Aligned_cols=106 Identities=14% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002222 711 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
.+.++|+=+|.|. |..+...++.. ..|.-+|.+++-.+...+.+ ++..+++||..+...
T Consensus 233 ~~~~~v~I~GgG~ig~~lA~~L~~~---~~v~iIE~d~~r~~~la~~l-----------------~~~~Vi~GD~td~~~ 292 (461)
T 4g65_A 233 KPYRRIMIVGGGNIGASLAKRLEQT---YSVKLIERNLQRAEKLSEEL-----------------ENTIVFCGDAADQEL 292 (461)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHHHHC-----------------TTSEEEESCTTCHHH
T ss_pred ccccEEEEEcchHHHHHHHHHhhhc---CceEEEecCHHHHHHHHHHC-----------------CCceEEeccccchhh
Confidence 3567999999885 44444444443 68999999998887776543 367899999988653
Q ss_pred ----CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002222 790 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 841 (951)
Q Consensus 790 ----~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~ 841 (951)
.-...|++++.-- +|+...+...+++-+.....+.-.-+.+|...+.
T Consensus 293 L~ee~i~~~D~~ia~T~-----~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~ 343 (461)
T 4g65_A 293 LTEENIDQVDVFIALTN-----EDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQ 343 (461)
T ss_dssp HHHTTGGGCSEEEECCS-----CHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHC
T ss_pred HhhcCchhhcEEEEccc-----CcHHHHHHHHHHHHcCCccccccccccchhhhhh
Confidence 2356899887543 3555566655666665555555555555665554
No 488
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=28.80 E-value=41 Score=36.14 Aligned_cols=50 Identities=26% Similarity=0.356 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~-qVVGVDISeemLe~Ark 755 (951)
+.+..+..++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~ 233 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKE 233 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH
Confidence 33444556788999999874 777777777542 4 89999999998888864
No 489
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=28.39 E-value=47 Score=35.08 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHhhcCCCCEEEEEcC--ccchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 703 YALQHIKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGC--GeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
.+.+.....++++||-.|+ |.|..+..+++..+ .+|+++|.+++-++.+.+
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~ 192 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVE 192 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3445556668899999998 56888877776543 699999999988887743
No 490
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=28.34 E-value=1.6e+02 Score=33.70 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=59.4
Q ss_pred CCEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC---------CccEEEEE
Q 002222 713 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD---------VKSAVLFD 781 (951)
Q Consensus 713 ~krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~---------~~nVtf~q 781 (951)
.++|.=||+|. +..+..+++.+ ..|+++|++++.++.+.+.+...+..... ++. ..++++.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~----~g~~~~~~~~~~~~~i~~~- 76 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHG---HQVLLYDISAEALTRAIDGIHARLNSRVT----RGKLTAETCERTLKRLIPV- 76 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHTTTT----TTSSCHHHHHHHHHTEEEE-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHhceeEe-
Confidence 35788899986 33456677777 78999999999999987765433322100 111 1134432
Q ss_pred ccccccCCCCCCccEEEEccccccCchh--HHHHHHHHHHHccCCCEEEEE
Q 002222 782 GSITVFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD--~l~~L~eeL~RvLKPGvLIIS 830 (951)
.|.. .....|+|+.. ++++ ....+.+++...++|+.++++
T Consensus 77 ~~~~----~~~~aDlVIeA-----Vpe~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 77 TDIH----ALAAADLVIEA-----ASERLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp CCGG----GGGGCSEEEEC-----CCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCHH----HhcCCCEEEEc-----CCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence 2332 12456877643 3322 233445568889999955544
No 491
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=28.32 E-value=59 Score=40.84 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002222 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr 756 (951)
...+++|+=||.|.+...|.+.|- ...+.++|+++.+++.-+.+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N 582 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLN 582 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHH
T ss_pred CCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHh
Confidence 345899999999999998877661 13577999999988876554
No 492
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=28.23 E-value=1e+02 Score=27.34 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCEEEEEcCcc-chh-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002222 712 CATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 712 k~krVLDIGCGe-G~l-l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
..++|+=+|+|. |.. +..|.+.+ .+|+++|.+++.++.+++ . ...++.+|..+..
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g---~~v~~~d~~~~~~~~~~~----------------~---~~~~~~~d~~~~~~ 62 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMG---HEVLAVDINEEKVNAYAS----------------Y---ATHAVIANATEENE 62 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT---CCCEEEESCHHHHHTTTT----------------T---CSEEEECCTTCHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH----------------h---CCEEEEeCCCCHHH
Confidence 346799999863 222 23444555 689999998765443311 1 2345667765422
Q ss_pred --C-CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002222 789 --S-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 841 (951)
Q Consensus 789 --~-~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~ 841 (951)
. ....+|+|+..---. ...........+.+.++.++...-+..+...+.
T Consensus 63 l~~~~~~~~d~vi~~~~~~----~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~ 114 (144)
T 2hmt_A 63 LLSLGIRNFEYVIVAIGAN----IQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE 114 (144)
T ss_dssp HHTTTGGGCSEEEECCCSC----HHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHH
T ss_pred HHhcCCCCCCEEEECCCCc----hHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 1 134689887643211 011111223455566665555555544444433
No 493
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=28.14 E-value=1.4e+02 Score=31.09 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=56.5
Q ss_pred hcCCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002222 709 KESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
....+++||=.|++.|. ++..|++.+ .+|+.+|.+++.++.+.+.+.. ...++.++++|+.
T Consensus 27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dv~ 90 (301)
T 3tjr_A 27 SGFDGRAAVVTGGASGIGLATATEFARRG---ARLVLSDVDQPALEQAVNGLRG-------------QGFDAHGVVCDVR 90 (301)
T ss_dssp CCSTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTT
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-------------cCCceEEEEccCC
Confidence 34567899999988663 456777877 7999999999988877666542 1236889999998
Q ss_pred ccCC----------CCCCccEEEEccc
Q 002222 786 VFDS----------RLHGFDIGTCLEV 802 (951)
Q Consensus 786 dLp~----------~d~sFDlVVcieV 802 (951)
+... ..+..|+++.+-.
T Consensus 91 d~~~v~~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 91 HLDEMVRLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 7542 1247899988644
No 494
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=27.89 E-value=1.5e+02 Score=30.97 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002222 711 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 711 ~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
.+++.+|=-|.+.|. .+..|++.+ ++|+.+|.+++.++.+.+.+... ..++.++++|+.+.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G---a~Vv~~~~~~~~~~~~~~~i~~~-------------g~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND---SIVVAVELLEDRLNQIVQELRGM-------------GKEVLGVKADVSKK 68 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence 478899999987775 456777888 79999999999998887766421 23688899999875
Q ss_pred CC----------CCCCccEEEEcc
Q 002222 788 DS----------RLHGFDIGTCLE 801 (951)
Q Consensus 788 p~----------~d~sFDlVVcie 801 (951)
.. ..+..|+++.+-
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 32 236789998754
No 495
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=27.69 E-value=5.5e+02 Score=27.95 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=62.2
Q ss_pred HHHHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002222 702 EYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 702 e~VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+++++.+... .+.+||.||.+.|.++..|+... ++.+.-|--.....+.++... + -....+++.
T Consensus 27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~-----~~~~~ds~~~~~~~~~n~~~~--~--------~~~~~~~~~ 91 (375)
T 4dcm_A 27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHK-----PYSIGDSYISELATRENLRLN--G--------IDESSVKFL 91 (375)
T ss_dssp HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC-----CEEEESCHHHHHHHHHHHHHT--T--------CCGGGSEEE
T ss_pred HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCC-----ceEEEhHHHHHHHHHHHHHHc--C--------CCccceEec
Confidence 4666665443 44689999999999998887543 455532554444444444321 0 111235554
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002222 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
. .. +.....||+|+...- .++ ..+......+...|+|| .+++...|.
T Consensus 92 ~-~~---~~~~~~~~~v~~~lp-k~~--~~l~~~L~~l~~~l~~~~~i~~~g~~~ 139 (375)
T 4dcm_A 92 D-ST---ADYPQQPGVVLIKVP-KTL--ALLEQQLRALRKVVTSDTRIIAGAKAR 139 (375)
T ss_dssp E-TT---SCCCSSCSEEEEECC-SCH--HHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred c-cc---cccccCCCEEEEEcC-CCH--HHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence 3 22 223467898765221 111 22233345678889999 666666654
No 496
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=27.55 E-value=83 Score=31.15 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=49.2
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.+++||=.|++.|. ++..|++.+ .+|+++|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 73 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADAANHVVDEIQQ-------------LGGQAFACRCDITSEQ 73 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHH-------------hCCceEEEEcCCCCHH
Confidence 56788888865332 335566666 7899999998777655544431 1136788889987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002222 789 S----------RLHGFDIGTCLEVI 803 (951)
Q Consensus 789 ~----------~d~sFDlVVcieVL 803 (951)
. ..+.+|+|+..-.+
T Consensus 74 ~~~~~~~~~~~~~~~~d~vi~~Ag~ 98 (255)
T 1fmc_A 74 ELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2 11378999876443
No 497
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=27.51 E-value=44 Score=30.24 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=49.1
Q ss_pred cccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeecc
Q 002222 387 TNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKS 466 (951)
Q Consensus 387 ~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~ 466 (951)
-+|..--|...|..+|..+ ..|.|... . .. |-.....|.|+|.|-.+.
T Consensus 11 ~~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~--------~--------------------~~--Gp~H~~~F~~~v~v~g~~ 58 (97)
T 2dmy_A 11 LDSKAIDLMNALMRLNQIR--PGLQYKLL--------S--------------------QS--GPVHAPVFTMSVDVDGTT 58 (97)
T ss_dssp CCCCSSSCTHHHHHHHHHS--CSCCCEEE--------E--------------------EE--SCSSSCEEEEEEEETTEE
T ss_pred ccCCCCCHHHHHHHHHhcC--CCceEEEE--------E--------------------ee--CCCCCCeEEEEEEECCEE
Confidence 3688888999999999874 56666554 0 01 222234499999985431
Q ss_pred CCcccccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002222 467 RDPILECSPKEFYKKQNESIENASLKVLSWLN 498 (951)
Q Consensus 467 ~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~ 498 (951)
+. ..=+..-+|=|+||.++|.-|.
T Consensus 59 ------~~--G~G~SKK~Aeq~AA~~aL~~L~ 82 (97)
T 2dmy_A 59 ------YE--ASGPSKKTAKLHVAVKVLQAMG 82 (97)
T ss_dssp ------EE--EEESSHHHHHHHHHHHHHHHHT
T ss_pred ------EE--EeeCCHHHHHHHHHHHHHHHhC
Confidence 22 2335667899999999998873
No 498
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=27.36 E-value=80 Score=26.57 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=27.5
Q ss_pred CCceeEEEEEeeccCCcccccCchhhhhhhhhhHhhhhhHHHHHHHh
Q 002222 453 SDNVRCEVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNA 499 (951)
Q Consensus 453 ~~~f~c~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~ 499 (951)
...|.|+|.|-.+ . ++ ..=+..-+|=|+||.++|.+|..
T Consensus 30 ~~~F~~~v~v~~~----~--~~--G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 30 AKSFVMSVVVDGQ----F--FE--GSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp TCCEEEEEECSSC----E--EE--EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCE----E--EE--EeeCCHHHHHHHHHHHHHHHHHh
Confidence 3459999998542 1 32 23355678999999999988753
No 499
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=27.08 E-value=50 Score=34.91 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=37.6
Q ss_pred HHHHhhcCCCCEEEEEcC--ccchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002222 704 ALQHIKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 704 VldlL~~~k~krVLDIGC--GeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+.+..+..++++||-.|+ |.|..+..+++..+ .+|+++|.+++.++.+++
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~ 198 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKT 198 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 334445567889999998 57888777776443 689999999988887753
No 500
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=26.33 E-value=1.5e+02 Score=29.94 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=53.3
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002222 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++++|=.|.+.|. ++..|++.+ .+|+.+|.+++.++.+.+.+. ....++.++++|+.+..
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~Dv~~~~ 68 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEG---ARVVITGRTKEKLEEAKLEIE-------------QFPGQILTVQMDVRNTD 68 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC-------------CSTTCEEEEECCTTCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHH-------------hcCCcEEEEEccCCCHH
Confidence 56788888876553 456677777 789999999988887766543 12247889999998743
Q ss_pred C----------CCCCccEEEEccc
Q 002222 789 S----------RLHGFDIGTCLEV 802 (951)
Q Consensus 789 ~----------~d~sFDlVVcieV 802 (951)
. ..+..|+++.+-.
T Consensus 69 ~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 69 DIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 2 1247899987643
Done!