BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002224
(951 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KEI|A Chain A, Thermolysin (substrate-free)
pdb|1KR6|A Chain A, Thermolysin Complexed With Z-d-glutamic Acid
(benzyloxycarbonyl-d- Glutamic Acid)
pdb|1KRO|A Chain A, Thermolysin Complexed With Z-D-Threonine
(Benzyloxycarbonyl-D- Threonine)
pdb|1KS7|A Chain A, Thermolysin Complexed With Z-D-Aspartic Acid
(Benzyloxycarbonyl-D- Aspartic Acid)
pdb|1KTO|A Chain A, Thermolysin Complexed With Z-d-alanine
(benzyloxycarbonyl-d-alanine)
pdb|1Y3G|E Chain E, Crystal Structure Of A Silanediol Protease Inhibitor Bound
To Thermolysin
pdb|1KJO|A Chain A, Thermolysin Complexed With Z-L-Threonine
(Benzyloxycarbonyl-L- Threonine)
pdb|1KJP|A Chain A, Thermolysin Complexed With Z-L-Glutamic Acid
(Benzyloxycarbonyl-L- Glutamic Acid)
pdb|1KKK|A Chain A, Thermolysin Complexed With Z-L-Aspartic Acid
(Benzyloxycarbonyl-L- Aspartic Acid)
pdb|1KL6|A Chain A, Thermolysin Complexed With Z-l-alanine
(benzyloxycarbonyl-l-alanine)
pdb|3DNZ|A Chain A, Thermolysin By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DO0|A Chain A, Thermolysin By Classical Hanging Drop Method After High X-
Ray Dose On Esrf Id14-2 Beamline
pdb|3DO1|A Chain A, Thermolysin By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3DO2|A Chain A, Thermolysin By Lb Nanotemplate Method After High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3FB0|A Chain A, Metal Exchange In Thermolysin
pdb|3FBO|A Chain A, Metal Exchange In Thermolysin
pdb|3FGD|A Chain A, Drugscore Fp: Thermoylsin In Complex With Fragment.
pdb|3FLF|A Chain A, Thermolysin Inhibition
pdb|3FV4|A Chain A, Thermolysin Inhibition
pdb|3FVP|A Chain A, Thermolysin Inhibition
pdb|3FXP|A Chain A, Thermolysin Inhibition
pdb|3FXS|A Chain A, Metal Exchange In Thermolysin
pdb|2WHZ|A Chain A, Dipeptide Inhibitors Of Thermolysin
pdb|2WI0|A Chain A, Dipeptide Inhibitors Of Thermolysin
pdb|3LS7|A Chain A, Crystal Structure Of Thermolysin In Complex With Xenon
pdb|3MS3|A Chain A, Crystal Structure Of Thermolysin In Complex With Aniline
pdb|3MSA|A Chain A, Crystal Structure Of Thermolysin In Complex With
3-Bromophenol
pdb|3MSF|A Chain A, Crystal Structure Of Thermolysin In Complex With Urea
pdb|3MSN|A Chain A, Crystal Structure Of Thermolysin In Complex With
N-Methylurea
pdb|3N21|A Chain A, Crystal Structure Of Thermolysin In Complex With
S-1,2-Propandiol
pdb|3NN7|A Chain A, Crystal Structure Of Thermolysin In Complex With
2-Bromoacetate
pdb|3SSB|A Chain A, Structure Of Insect Metalloproteinase Inhibitor In Complex
With Thermolysin
pdb|3SSB|B Chain B, Structure Of Insect Metalloproteinase Inhibitor In Complex
With Thermolysin
pdb|3QGO|A Chain A, Structure Of Thermolysin In Complex With L-Phenylalanine
Methylester
pdb|3QH1|A Chain A, Structure Of Thermolysin In Complex With
N-Benzyloxycarbonyl-L- Aspartic Acid
pdb|3QH5|A Chain A, Structure Of Thermolysin In Complex With
N-Carbobenzyloxy-L-Aspartic Acid And L-Phenylalanine
Methyl Ester
pdb|3T73|A Chain A, Thermolysin In Complex With Ubtln22
pdb|3T74|A Chain A, Thermolysin In Complex With Ubtln27
pdb|3T87|A Chain A, Thermolysin In Complex With Ubtln28
pdb|3T8C|A Chain A, Thermolysin In Complex With Ubtln30
pdb|3T8D|A Chain A, Thermolysin In Complex With Ubtln31
pdb|3T8F|A Chain A, Thermolysin In Complex With Ubtln34
pdb|3T8G|A Chain A, Thermolysin In Complex With Ubtln26
pdb|3T8H|A Chain A, Thermolysin In Complex With Ubtln29
pdb|4H57|A Chain A, Thermolysin Inhibition
pdb|4D91|A Chain A, Thermolysin In Complex With Dmso And Acetate
pdb|4D9W|A Chain A, Thermolysin In Complex With Ubtln32
Length = 316
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 61 AGFAPLAAYLFSW--QEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 118
+G AAYL S Y +S GR + F A+T + +P SNFS AAA
Sbjct: 234 SGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQL---RAAAVQ 290
Query: 119 AATTTWGSGVTAVA 132
+AT +GS VA
Sbjct: 291 SATDLYGSTSQEVA 304
>pdb|1TLP|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|1TMN|E Chain E, Binding Of N-Carboxymethyl Dipeptide Inhibitors To
Thermolysin Determined By X-Ray Crystallography. A Novel
Class Of Transition- State Analogues For Zinc Peptidases
pdb|2TMN|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|4TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|5TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|6TMN|E Chain E, Structures Of Two Thermolysin-inhibitor Complexes That
Differ By A Single Hydrogen Bond
pdb|8TLN|E Chain E, Structural Comparison Suggests That Thermolysin And
Related Neutral Proteases Undergo Hinge-Bending Motion
During Catalysis
pdb|1LNE|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNF|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNB|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNC|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LND|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1QF0|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Phe-Tyr. Parameters For Zn-Bidentation
Of Mercaptoacyldipeptides In Metalloendopeptidase
pdb|1QF1|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-
Sulphanylheptanoyl)-Phe-Ala. Parameters For
Zn-Bidentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1QF2|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Gly-(5-Phenylproline). Parameters For
Zn- Monodentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1TLI|A Chain A, Thermolysin (2% Isopropanol Soaked Crystals)
pdb|2TLI|A Chain A, Thermolysin (5% Isopropanol Soaked Crystals)
pdb|3TLI|A Chain A, Thermolysin (10% Isopropanol Soaked Crystals)
pdb|1TLX|A Chain A, Thermolysin (Native)
pdb|2TLX|A Chain A, Thermolysin (Native)
pdb|4TLI|A Chain A, Thermolysin (25% Isopropanol Soaked Crystals)
pdb|5TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|6TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|7TLI|A Chain A, Thermolysin (90% Isopropanol Soaked Crystals)
pdb|8TLI|A Chain A, Thermolysin (100% Isopropanol Soaked Crystals)
pdb|1FJ3|A Chain A, Thermolysin (50% Acetone Soaked)
pdb|1FJO|A Chain A, Thermolysin (60% Acetone Soaked Crystals)
pdb|1FJQ|A Chain A, Thermolysin (70% Acetone Soaked Crystals)
pdb|1FJT|A Chain A, Thermolysin (50% Acetonitrile Soaked Crystals)
pdb|1FJU|A Chain A, Thermolysin (80% Acetonitrile Soaked Crystals)
pdb|1FJV|A Chain A, Thermolysin (60% Acetonitrile Soaked Crystals)
pdb|1FJW|A Chain A, Thermolysin (50 Mm Phenol Soaked)
pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate Has An Open
Conformation
pdb|1OS0|A Chain A, Thermolysin With An Alpha-Amino Phosphinic Inhibitor
pdb|1PE5|A Chain A, Thermolysin With Tricyclic Inhibitor
pdb|1PE7|A Chain A, Thermolysin With Bicyclic Inhibitor
pdb|1PE8|A Chain A, Thermolysin With Monocyclic Inhibitor
pdb|1ZDP|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (S)-Thiorphan
pdb|2A7G|E Chain E, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Z|A Chain A, Anomalous Substructure Of Thermolysin
pdb|1HYT|A Chain A, Re-Determination And Refinement Of The Complex Of
Benzylsuccinic Acid With Thermolysin And Its Relation To
The Complex With Carboxypeptidase A
pdb|1THL|A Chain A, Thermolysin Complexed With A Novel Glutaramide Derivative,
N-(1-(2(r, S)-carboxy-4-phenylbutyl)
Cyclopentylcarbonyl)-(s)-tryptophan
pdb|4TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|5TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|7TLN|A Chain A, Structural Analysis Of The Inhibition Of Thermolysin By An
Active- Site-directed Irreversible Inhibitor
pdb|3EIM|A Chain A, Metal Exchange In Thermolysin
pdb|3F28|A Chain A, Thermolysin Inhibition
pdb|3F2P|A Chain A, Thermolysin Inhibition
pdb|3FCQ|A Chain A, Thermolysin Inhibition
pdb|3FOR|A Chain A, Thermolysin Complexed With Bnpa (2-Benzyl-3-Nitro
Propanoic Acid Amide)
pdb|3P7P|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure A
(0.1 Mgy)
pdb|3P7Q|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure B
(2.5 Mgy)
pdb|3P7R|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure C
(4.9 Mgy)
pdb|3P7S|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure D
(7.2 Mgy)
pdb|3P7T|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure A
(0.1 Mgy)
pdb|3P7U|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure B
(2.4 Mgy)
pdb|3P7V|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure C
(4.8 Mgy)
pdb|3P7W|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure D
(7.1 Mgy)
pdb|1GXW|A Chain A, The 2.2 A Resolution Structure Of Thermolysin Crystallized
In Presence Of Potassium Thiocyanate
pdb|3T2H|E Chain E, Tetragonal Thermolysin In The Presence Of Tmao
pdb|3T2I|E Chain E, Tetragonal Thermolysin In The Presence Of Sarcosine
pdb|3T2J|E Chain E, Tetragonal Thermolysin In The Presence Of Betaine
pdb|3TMN|E Chain E, The Binding Of L-Valyl-L-Tryptophan To Crystalline
Thermolysin Illustrates The Mode Of Interaction Of A
Product Of Peptide Hydrolysis
Length = 316
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 61 AGFAPLAAYLFSW--QEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 118
+G AAYL S Y +S GR + F A+T + +P SNFS AAA
Sbjct: 234 SGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQL---RAAAVQ 290
Query: 119 AATTTWGSGVTAVA 132
+AT +GS VA
Sbjct: 291 SATDLYGSTSQEVA 304
>pdb|1Z9G|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (R)-Retro-Thiorphan
Length = 316
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 61 AGFAPLAAYLFSW--QEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 118
+G AAYL S Y +S GR + F A+T + +P SNFS AAA
Sbjct: 234 SGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQL---RAAAVQ 290
Query: 119 AATTTWGSGVTAVA 132
+AT +GS VA
Sbjct: 291 SATDLYGSTSQEVA 304
>pdb|1LNA|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
Length = 316
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 61 AGFAPLAAYLFSW--QEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 118
+G AAYL S Y +S GR + F A+T + +P SNFS AAA
Sbjct: 234 SGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQL---RAAAVQ 290
Query: 119 AATTTWGSGVTAVA 132
+AT +GS VA
Sbjct: 291 SATDLYGSTSQEVA 304
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 34/149 (22%)
Query: 127 GVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGW-RVQRWESSVQPVVLHQIFG 185
GV ++A DP V IV G Y + + P+ G + R + WE ++ P ++ G
Sbjct: 73 GVESIATDPVDPNRV---YIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPF---KMGG 126
Query: 186 N-PTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCD--VWKTTDSGLEKSKIV 242
N P S G + + P N ++ G C +W++TD G+ SK+
Sbjct: 127 NMPGRSMGERLAID-----------PNDN----RILYLGTRCGNGLWRSTDYGVTWSKVE 171
Query: 243 SF--------DP-FDLPSDIRSLARIVYS 262
SF DP FD DI + +V+
Sbjct: 172 SFPNPGTYIYDPNFDYTKDIIGVVWVVFD 200
>pdb|3FW6|A Chain A, Crystal Structure Of Celm2, A Bifunctional Glucanase-
Xylanase Protein From A Metagenome Library
Length = 534
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 441 MLGKGIESALINPSALV--PDPWQASGETLSGIDPE 474
ML G + ++PSAL+ P+ W SG TLSG D +
Sbjct: 231 MLDYGAKIKTVDPSALIVGPEEWGWSGYTLSGYDQQ 266
>pdb|3II1|A Chain A, Structural Characterization Of Difunctional Glucanase-
Xylanse Celm2
Length = 535
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 441 MLGKGIESALINPSALV--PDPWQASGETLSGIDPE 474
ML G + ++PSAL+ P+ W SG TLSG D +
Sbjct: 231 MLDYGAKIKTVDPSALIVGPEEWGWSGYTLSGYDQQ 266
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 32/148 (21%)
Query: 127 GVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGW-RVQRWESSVQPVVLHQIFG 185
GV ++A DP V IV G Y + + P+ G + R + WE ++ P
Sbjct: 73 GVESIATDPVDPNRV---YIVAGXYTNDWLPNXGAILRSTDRGETWEKTILPF------- 122
Query: 186 NPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCD--VWKTTDSGLEKSKIVS 243
GG P ++ +I ++ +I L G C +W++TD G+ SK+ S
Sbjct: 123 ----KXGGNXPGRS---XGERLAIDPNDNRILYL---GTRCGNGLWRSTDYGVTWSKVES 172
Query: 244 F--------DP-FDLPSDIRSLARIVYS 262
F DP FD DI + +V+
Sbjct: 173 FPNPGTYIYDPNFDYTKDIIGVVWVVFD 200
>pdb|2ZEG|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201l At 2.08 Angstrom Resolution
pdb|2ZEG|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201l At 2.08 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|3SI0|A Chain A, Structure Of Glycosylated Human Glutaminyl Cyclase
Length = 330
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 27 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 79
>pdb|2ZEP|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
H319l At 2.1 Angstrom Resolution
pdb|2ZEP|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
H319l At 2.1 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZED|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160a At 1.7 Angstrom Resolution
pdb|2ZED|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160a At 1.7 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZEN|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305a At 1.78 Angstrom Resolution
pdb|2ZEN|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305a At 1.78 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZEL|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248a At 1.97 Angstrom Resolution
pdb|2ZEL|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248a At 1.97 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZEF|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201d At 1.67 Angstrom Resolution
pdb|2ZEF|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201d At 1.67 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2AFM|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase At Ph 6.5
pdb|2AFM|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase At Ph 6.5
pdb|2AFO|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase At Ph 8.0
pdb|2AFO|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase At Ph 8.0
pdb|2AFW|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With N-Acetylhistamine
pdb|2AFW|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With N-Acetylhistamine
pdb|2AFX|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Benzylimidazole
pdb|2AFX|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Benzylimidazole
pdb|2AFZ|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Vinylimidazole
pdb|2AFZ|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Vinylimidazole
pdb|3PBB|A Chain A, Crystal Structure Of Human Secretory Glutaminyl Cyclase In
Complex With Pbd150
pdb|3PBB|B Chain B, Crystal Structure Of Human Secretory Glutaminyl Cyclase In
Complex With Pbd150
Length = 329
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZEE|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160g At 1.99 Angstrom Resolution
pdb|2ZEE|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160g At 1.99 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2AFU|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With Glutamine T-Butyl Ester
pdb|2AFU|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With Glutamine T-Butyl Ester
pdb|2ZEH|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201q At 1.8 Angstrom Resolution
pdb|2ZEH|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201q At 1.8 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|3PBE|A Chain A, Crystal Structure Of The Mutant W207f Of Human Secretory
Glutaminyl Cyclase
pdb|3PBE|B Chain B, Crystal Structure Of The Mutant W207f Of Human Secretory
Glutaminyl Cyclase
Length = 329
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZEO|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305e At 1.66 Angstrom Resolution
pdb|2ZEO|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305e At 1.66 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2ZEM|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248q At 2.18 Angstrom Resolution
pdb|2ZEM|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248q At 2.18 Angstrom Resolution
Length = 329
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
>pdb|2AFS|A Chain A, Crystal Structure Of The Genetic Mutant R54w Of Human
Glutaminyl Cyclase
pdb|2AFS|B Chain B, Crystal Structure Of The Genetic Mutant R54w Of Human
Glutaminyl Cyclase
Length = 329
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 159 EGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTV------WVSKVDTSI 209
EG SI+ + W++ +QP+++ + G+P S Q MQ + WV ++DT +
Sbjct: 26 EGTSIS----EMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,413,091
Number of Sequences: 62578
Number of extensions: 1162423
Number of successful extensions: 2405
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2403
Number of HSP's gapped (non-prelim): 25
length of query: 951
length of database: 14,973,337
effective HSP length: 108
effective length of query: 843
effective length of database: 8,214,913
effective search space: 6925171659
effective search space used: 6925171659
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)