BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002224
         (951 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|F4JGZ1|MED16_ARATH Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis
            thaliana GN=MED16 PE=1 SV=1
          Length = 1278

 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/969 (77%), Positives = 826/969 (85%), Gaps = 27/969 (2%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W
Sbjct: 319  MAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSW 378

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAA
Sbjct: 379  TGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAA 438

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL
Sbjct: 439  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 498

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  DSG EK+
Sbjct: 499  HQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKA 558

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
              V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAI
Sbjct: 559  NKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAI 618

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSL
Sbjct: 619  AAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSL 678

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLE
Sbjct: 679  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLE 738

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+
Sbjct: 739  GTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVD 798

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++
Sbjct: 799  PALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASS 858

Query: 540  PAASQ----------AGQ-------SGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTS 582
            PA  Q           GQ       + TT+S+GS+ +QAW+QGAIAKISS+NDG SN T+
Sbjct: 859  PATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG-SNSTA 917

Query: 583  NPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQ 642
            +PISG  +FMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      Q
Sbjct: 918  SPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------Q 971

Query: 643  RNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGR 702
            RN D + QK Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A  
Sbjct: 972  RNADVSSQKLQTGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGTGVKGIDENSART 1029

Query: 703  PKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYT 762
             KMG GNAGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYT
Sbjct: 1030 TKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYT 1089

Query: 763  VLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGP 822
            VLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+  
Sbjct: 1090 VLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMIL 1149

Query: 823  VDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIM 882
             DD  KLSN +D  D N SG  D Y   H LWPRKRRMSERDAAFG NTSVGLGAYLGIM
Sbjct: 1150 TDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIM 1209

Query: 883  GSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPM 942
            GSRRDVVTA WKTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW + CPM
Sbjct: 1210 GSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPM 1269

Query: 943  CGGTWVRVV 951
            CGGTWVRVV
Sbjct: 1270 CGGTWVRVV 1278


>sp|Q54X75|MED16_DICDI Putative mediator of RNA polymerase II transcription subunit 16
            OS=Dictyostelium discoideum GN=med16 PE=3 SV=2
          Length = 1284

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 882  MGSRRDVVTAV-WKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGC 940
            MG   D++T +     ++  + KCIRC R T    +              +W  RW+  C
Sbjct: 1134 MGIVHDIITRIPIAPRIDKPYKKCIRCHRITVMLRT------------SMFWSDRWSMAC 1181

Query: 941  PMCGGTW 947
            P+CGG W
Sbjct: 1182 PICGGKW 1188



 Score = 40.0 bits (92), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 343 NSSTWERAIAERFWWSLLVNVDWWDAVGCTQ--SAAEDGIVSLNSVIAVLDADFHSLPSI 400
           N     + +A+ F  S+L + DWWD +   +  S + D   + +  I  L +DF  LP +
Sbjct: 724 NQKVVSKWLAQLFQNSMLKSNDWWDILILLKIYSTSPDTRTTFHHTIIHLSSDFSCLP-L 782

Query: 401 QHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDP 460
             +Q Y    D IK  +    +  EV    +D QA+  +  L   ++S+    S L+  P
Sbjct: 783 TFQQTYRHCFDAIKASIYRIVSGMEVA--FVDSQAKSFIYYLCDTLKSSF---SPLLMQP 837

Query: 461 WQASGET 467
            Q S  T
Sbjct: 838 SQQSDGT 844


>sp|Q9FNF2|SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis
           thaliana GN=SS1 PE=2 SV=1
          Length = 652

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 630 RRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDE-GQVARAGQT 688
           R + + R + +A+R+   +V   Q++ PG  + +++  G+ T    K +   Q+  A   
Sbjct: 58  RESDEERFITDAERDGSGSVLGFQLTPPGDQQTVSTSTGEITHHEEKKEAIDQIVMADFG 117

Query: 689 VPGAKGVEEGPA 700
           VPG + VEEG A
Sbjct: 118 VPGNRAVEEGAA 129


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,314,672
Number of Sequences: 539616
Number of extensions: 16697634
Number of successful extensions: 45820
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 45425
Number of HSP's gapped (non-prelim): 404
length of query: 951
length of database: 191,569,459
effective HSP length: 127
effective length of query: 824
effective length of database: 123,038,227
effective search space: 101383499048
effective search space used: 101383499048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)