Query 002224
Match_columns 951
No_of_seqs 26 out of 28
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 17:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002224.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002224hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xkta_ c.69.1.22 (A:) Fatty a 19.4 22 0.0016 28.2 1.9 28 159-188 11-39 (286)
2 d1s0ya_ d.80.1.1 (A:) Trans-3- 16.3 64 0.0047 23.8 3.8 60 413-473 3-62 (62)
3 d1r9fa_ d.255.1.1 (A:) Tombusv 16.3 8.9 0.00065 33.7 -1.4 22 152-173 3-25 (124)
4 d1ppjd1 a.3.1.3 (D:1-195) Cyto 16.1 16 0.0012 33.4 0.3 19 794-816 2-20 (195)
5 g1cp9.1 d.153.1.2 (A:,B:) Peni 14.8 27 0.002 35.8 1.7 27 584-611 222-255 (750)
6 d2d9ta1 b.34.9.1 (A:8-67) Tudo 13.8 31 0.0023 25.5 1.4 23 743-765 25-48 (60)
7 g1gk9.1 d.153.1.2 (A:,B:) Peni 13.4 31 0.0022 35.6 1.6 39 572-611 218-266 (765)
8 d1ow1a_ b.131.1.3 (A:) SMART/H 13.4 33 0.0024 31.3 1.7 52 745-808 21-73 (170)
9 d1hr0w_ b.40.4.5 (W:) Translat 12.8 48 0.0035 26.2 2.3 9 152-160 57-65 (71)
10 d1otfa_ d.80.1.1 (A:) 4-oxaloc 11.8 88 0.0064 22.7 3.4 56 413-469 3-58 (59)
No 1
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.43 E-value=22 Score=28.16 Aligned_cols=28 Identities=43% Similarity=0.727 Sum_probs=21.7
Q ss_pred CCCCcceeeEEeeccCCCceee-eeccCCCC
Q 002224 159 EGPSITGWRVQRWESSVQPVVL-HQIFGNPT 188 (951)
Q Consensus 159 eGPsiTGWRvqrWESs~qpvvl-hpifg~pt 188 (951)
+||.|. +++.++++-.|+++ |.+.||..
T Consensus 11 ~~~~l~--~l~~~~~~~~Pl~l~Hg~~gs~~ 39 (286)
T d1xkta_ 11 EGPTLM--RLNSVQSSERPLFLVHPIEGSTT 39 (286)
T ss_dssp TSCSEE--ECCCCCCCSCCEEEECCTTCCCG
T ss_pred CCCEEE--EecCCCCCCCeEEEECCCCccHH
Confidence 356666 77889999999876 99888863
No 2
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=16.29 E-value=64 Score=23.77 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=47.3
Q ss_pred eeeeeccccchhHHHHHHHHhHHHHHHHHhhccccccccCCCccCCCccccccccccCCCC
Q 002224 413 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDP 473 (951)
Q Consensus 413 Ikcrlleg~naqeVRa~vlDmQarlllDmLgkgiesaLinpsalvpepWqas~etls~i~p 473 (951)
|.+-+.+|-+.+.-|+++-++ .+.+-+-||.--|..-|-=.-+-+|-|-..|+.||.+-|
T Consensus 3 I~v~~~~Grt~eqK~~l~~~i-t~~~~~~~g~~~e~v~V~i~E~~~~nw~~gG~~lse~~p 62 (62)
T d1s0ya_ 3 ISCDMRYGRTDEQKRALSAGL-LRVISEATGEPRENIFFVIREGSGINFVEHGEHLPDYVP 62 (62)
T ss_dssp EEEEEETTCCHHHHHHHHHHH-HHHHHHHHCCCGGGCEEEEEEECGGGEEETTEECCCCCC
T ss_pred EEEEEeCCCCHHHHHHHHHHH-HHHHHHHhCcCcccEEEEEEEeChHHeEECCEEccccCC
Confidence 567788999888888877666 466778888888887776677778889999988887654
No 3
>d1r9fa_ d.255.1.1 (A:) Tombusvirus P19 core protein, VP19 {Tomato bushy stunt virus, TBSV [TaxId: 12145]}
Probab=16.25 E-value=8.9 Score=33.74 Aligned_cols=22 Identities=50% Similarity=0.952 Sum_probs=16.6
Q ss_pred cCCCC-CCCCCCcceeeEEeecc
Q 002224 152 MSPYD-PDEGPSITGWRVQRWES 173 (951)
Q Consensus 152 mSPyd-PdeGPsiTGWRvqrWES 173 (951)
.+|+- |||.|+.+.||++.=|.
T Consensus 3 ~spFkLpDESPs~~EWRlH~~e~ 25 (124)
T d1r9fa_ 3 TSPFKLPDESPSWTEWRLHNDET 25 (124)
T ss_dssp CCSCSSCCCCCCHHHHHHHHHHC
T ss_pred CCCccCCCCCCchhhhhhccccc
Confidence 35554 99999999999875543
No 4
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.11 E-value=16 Score=33.39 Aligned_cols=19 Identities=47% Similarity=0.922 Sum_probs=15.8
Q ss_pred hhccCCChHHHHhhcccCCCCCC
Q 002224 794 ELELHPPAEEWHRRNMFGGPWSD 816 (951)
Q Consensus 794 ELELhPPaEewhRrnmFggp~sd 816 (951)
|+|||||..+|. |-||+..
T Consensus 2 ~~~~~~~~~~~~----f~g~~g~ 20 (195)
T d1ppjd1 2 DLELHPPSYPWS----HRGLLSS 20 (195)
T ss_dssp CCCCCCCCCCCT----TCSTTCC
T ss_pred ccccCCCCCCCC----CCCCccc
Confidence 789999999997 7777643
No 5
>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia rettgeri [TaxId: 587]}
Probab=14.81 E-value=27 Score=35.80 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCCCCCccceeeeec-------CCCCCCcceeeec
Q 002224 584 PISGPSSFMPISINT-------GTFPGTPAVRLIG 611 (951)
Q Consensus 584 pisGpssfmpiSInT-------gTFPGTPAVRLIg 611 (951)
|.++|+.++...++. +||||+|.| +||
T Consensus 222 ~~~~p~~wy~~~L~~p~~~v~G~~lpG~P~i-~iG 255 (750)
T g1cp9.1 222 GWFNPAYTYGIGLHGAGFNIVGNTPFAYPAI-LFG 255 (750)
T ss_dssp CCBSSCSEEEEEEEETTEEEEEEEETTCSSC-CEE
T ss_pred chhhceEEEEeeeccCCcceeecccccceEE-EEe
Confidence 789999999987775 589999999 898
No 6
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.84 E-value=31 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=17.2
Q ss_pred ccccCCccEEEEEEEe-Cceeech
Q 002224 743 SQVGSSNIQVRLHYID-GNYTVLP 765 (951)
Q Consensus 743 SQVGS~NIqvRLHYId-GnYTVlP 765 (951)
.++..++=++..+||| ||+.++|
T Consensus 25 ~~i~~~~~~~~V~fvDYGn~e~v~ 48 (60)
T d2d9ta1 25 EALHSSGMTAVVKFTDYGNYEEVL 48 (60)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEEECCCCEEEEc
Confidence 3444555579999999 9998776
No 7
>g1gk9.1 d.153.1.2 (A:,B:) Penicillin acylase {Escherichia coli [TaxId: 562]}
Probab=13.42 E-value=31 Score=35.63 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=29.1
Q ss_pred cCCCCCCCCCCC---CCCCCCccceeeeecC-------CCCCCcceeeec
Q 002224 572 STNDGVSNPTSN---PISGPSSFMPISINTG-------TFPGTPAVRLIG 611 (951)
Q Consensus 572 ~t~dg~sn~tpn---pisGpssfmpiSInTg-------TFPGTPAVRLIg 611 (951)
-|.+|.+=..-+ |.++|+.++...++.. ||||+|.| +||
T Consensus 218 ~T~sG~~lLa~dPHl~~~~P~~wy~~~L~~p~~~v~G~~lpG~P~v-~iG 266 (765)
T g1gk9.1 218 KAQDAKAIMVNGPQFGWYAPAYTYGIGLHGAGYDVTGNTPFAYPGL-VFG 266 (765)
T ss_dssp TBSSSSEEEEEECCCCCBSSCSEEEEEEEETTEEEEEEEETTCSSC-SEE
T ss_pred cCCCCceEEecCccccccccceeeeeccccCCceeeeeecccceee-eee
Confidence 345554433333 7899999999988875 79999999 687
No 8
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein, SHARP {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.42 E-value=33 Score=31.31 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=31.4
Q ss_pred ccCCccEEEEEEEeCceeechhhhhcccCcccccCCCCCCccccchhhhhhccCCCh-HHHHhhc
Q 002224 745 VGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPA-EEWHRRN 808 (951)
Q Consensus 745 VGS~NIqvRLHYIdGnYTVlPEVVEAsLgphMQNmPRpRgADaaGLLlRELELhPPa-EewhRrn 808 (951)
+-+++.-|++|||+|| .++.+.+|-.+ -+- ..=.+...|.|-+|. ||=.||.
T Consensus 21 LKns~f~v~mH~l~Gn----~~la~~~l~~~-------~~~-~~LrI~QRlRLd~~kLe~V~rRi 73 (170)
T d1ow1a_ 21 LKNDTAAVQLHFVSGN----NVLAHRSLPLS-------EGG-PPLRIAQRMRLEATQLEGVARRM 73 (170)
T ss_dssp ETTEEEEEEEEEEEEC----HHHHHHHSCCC-----------CCEEECEEEECSHHHHHHHHHHT
T ss_pred ecccchhheEEEEeCC----HHHHHhhCCCC-------CCC-CcEEeeeecccChHHHHHHHHHH
Confidence 3467889999999999 56666665322 111 111233456777664 6667776
No 9
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=12.76 E-value=48 Score=26.16 Aligned_cols=9 Identities=56% Similarity=1.431 Sum_probs=8.2
Q ss_pred cCCCCCCCC
Q 002224 152 MSPYDPDEG 160 (951)
Q Consensus 152 mSPydPdeG 160 (951)
|||||++.|
T Consensus 57 l~pyd~~kg 65 (71)
T d1hr0w_ 57 ITPYDPTRG 65 (71)
T ss_dssp CCTTCTTCC
T ss_pred ECccCCCcE
Confidence 899999987
No 10
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=11.82 E-value=88 Score=22.70 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=43.4
Q ss_pred eeeeeccccchhHHHHHHHHhHHHHHHHHhhccccccccCCCccCCCcccccccccc
Q 002224 413 IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLS 469 (951)
Q Consensus 413 Ikcrlleg~naqeVRa~vlDmQarlllDmLgkgiesaLinpsalvpepWqas~etls 469 (951)
|.+.|++|-+.+.-|+++-++ ...|-+-||.--|...|-=.-.-+|-|-..|.++|
T Consensus 3 I~i~~~~Grs~eqK~~l~~~i-t~~~~~~~g~~~~~v~V~i~E~~~~nw~~gG~~~s 58 (59)
T d1otfa_ 3 AQLYIIEGRTDEQKETLIRQV-SEAMANSLDAPLERVRVLITEMPKNHFGIGGEPAS 58 (59)
T ss_dssp EEEEEESCCCHHHHHHHHHHH-HHHHHHHHTCCGGGCEEEEEEECGGGEEETTEETT
T ss_pred EEEEEcCCCCHHHHHHHHHHH-HHHHHHHhCcCcccEEEEEEEeChhhEEECCEECC
Confidence 567889999887777777666 56677888988888777667777888888777765
Done!