Query 002225
Match_columns 951
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 19:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00606 rad50 rad50. This fa 95.4 13 0.00029 48.4 46.4 72 835-909 898-969 (1311)
2 PF12128 DUF3584: Protein of u 93.6 31 0.00068 44.9 39.4 45 359-403 366-412 (1201)
3 KOG0161 Myosin class II heavy 92.4 58 0.0013 44.8 42.9 133 369-519 1172-1314(1930)
4 PF06160 EzrA: Septation ring 91.4 38 0.00083 40.6 39.8 172 734-929 345-531 (560)
5 KOG4674 Uncharacterized conser 90.5 84 0.0018 43.0 38.9 135 764-898 915-1067(1822)
6 KOG0250 DNA repair protein RAD 89.0 86 0.0019 40.8 27.5 165 742-910 311-496 (1074)
7 PRK04778 septation ring format 87.7 71 0.0015 38.4 37.1 179 736-925 351-561 (569)
8 PF00261 Tropomyosin: Tropomyo 87.6 43 0.00093 35.8 21.9 72 729-800 88-159 (237)
9 PF05483 SCP-1: Synaptonemal c 87.6 86 0.0019 39.2 28.4 135 710-851 245-382 (786)
10 TIGR02169 SMC_prok_A chromosom 86.2 1E+02 0.0022 38.8 39.0 8 160-167 7-14 (1164)
11 TIGR00606 rad50 rad50. This fa 81.9 1.9E+02 0.0041 38.4 38.4 35 194-228 396-430 (1311)
12 TIGR02168 SMC_prok_B chromosom 80.0 1.7E+02 0.0037 36.7 38.3 35 456-490 171-205 (1179)
13 PRK02224 chromosome segregatio 78.1 1.9E+02 0.0041 36.1 45.7 10 650-659 461-470 (880)
14 TIGR02168 SMC_prok_B chromosom 75.9 2.2E+02 0.0048 35.7 29.3 10 57-66 96-105 (1179)
15 KOG0994 Extracellular matrix g 75.5 2.9E+02 0.0063 36.9 25.7 76 403-490 1190-1265(1758)
16 PLN02939 transferase, transfer 75.2 1.5E+02 0.0033 38.6 18.6 209 670-934 135-349 (977)
17 COG1196 Smc Chromosome segrega 70.0 3.6E+02 0.0077 35.5 37.2 59 834-892 441-499 (1163)
18 PF15619 Lebercilin: Ciliary p 69.1 1.6E+02 0.0035 31.3 20.4 166 725-898 18-188 (194)
19 KOG0250 DNA repair protein RAD 68.5 3.9E+02 0.0083 35.4 22.8 148 704-851 308-462 (1074)
20 PF07888 CALCOCO1: Calcium bin 67.8 3E+02 0.0065 33.9 21.7 29 763-791 208-236 (546)
21 PF05483 SCP-1: Synaptonemal c 67.7 3.4E+02 0.0073 34.4 32.1 141 734-877 588-728 (786)
22 PF06160 EzrA: Septation ring 66.0 3.1E+02 0.0067 33.3 26.3 48 875-925 272-319 (560)
23 PF09728 Taxilin: Myosin-like 65.4 2.4E+02 0.0053 31.9 25.0 67 738-804 214-280 (309)
24 KOG0971 Microtubule-associated 63.1 4.6E+02 0.01 34.4 30.9 25 498-522 223-247 (1243)
25 PRK11637 AmiB activator; Provi 63.1 2.9E+02 0.0063 32.0 20.8 61 841-901 193-253 (428)
26 COG0497 RecN ATPase involved i 60.2 3.1E+02 0.0067 33.8 16.4 130 668-804 159-305 (557)
27 PF09789 DUF2353: Uncharacteri 55.7 3.8E+02 0.0082 31.0 19.9 119 744-875 104-232 (319)
28 PF04048 Sec8_exocyst: Sec8 ex 55.3 2E+02 0.0043 28.8 11.7 98 781-885 42-141 (142)
29 PF11945 WASH_WAHD: WAHD domai 53.8 43 0.00093 37.7 7.6 56 806-861 17-72 (297)
30 PF04048 Sec8_exocyst: Sec8 ex 53.5 1E+02 0.0022 30.8 9.4 70 757-826 61-139 (142)
31 PF10191 COG7: Golgi complex c 52.7 3.1E+02 0.0068 34.6 15.4 155 734-921 71-230 (766)
32 KOG0994 Extracellular matrix g 51.9 7.7E+02 0.017 33.4 35.0 123 429-562 1368-1502(1758)
33 KOG0996 Structural maintenance 48.9 8.3E+02 0.018 32.9 28.9 143 770-912 435-594 (1293)
34 PRK02224 chromosome segregatio 48.1 6.6E+02 0.014 31.5 39.3 56 840-895 531-586 (880)
35 PF10168 Nup88: Nuclear pore c 46.7 4.2E+02 0.0092 33.5 15.1 14 51-64 46-59 (717)
36 KOG4673 Transcription factor T 45.1 7.8E+02 0.017 31.6 27.5 73 725-797 522-602 (961)
37 COG1579 Zn-ribbon protein, pos 44.7 4.8E+02 0.01 29.0 16.2 50 805-854 122-171 (239)
38 PF04949 Transcrip_act: Transc 43.6 64 0.0014 33.6 6.4 100 366-470 39-146 (159)
39 PF13870 DUF4201: Domain of un 42.9 3.8E+02 0.0083 27.4 15.6 128 782-918 6-144 (177)
40 PF10168 Nup88: Nuclear pore c 41.7 6.2E+02 0.013 32.1 15.5 20 841-860 694-713 (717)
41 PRK11637 AmiB activator; Provi 41.2 6.3E+02 0.014 29.3 17.5 35 774-808 95-129 (428)
42 cd08915 V_Alix_like Protein-in 40.2 5.8E+02 0.013 28.6 15.5 46 702-747 74-119 (342)
43 smart00787 Spc7 Spc7 kinetocho 39.1 6.4E+02 0.014 28.8 18.2 104 605-714 67-174 (312)
44 KOG2180 Late Golgi protein sor 39.0 8.4E+02 0.018 31.3 15.6 89 417-512 37-127 (793)
45 COG1196 Smc Chromosome segrega 38.2 1.1E+03 0.024 31.3 28.1 20 904-923 476-495 (1163)
46 PHA02562 46 endonuclease subun 38.0 7.3E+02 0.016 29.2 24.3 18 664-681 168-185 (562)
47 PHA03332 membrane glycoprotein 37.2 3.3E+02 0.0071 36.1 12.1 44 807-850 905-948 (1328)
48 smart00035 CLa CLUSTERIN alpha 35.1 1.2E+02 0.0027 33.1 7.2 60 805-864 96-155 (216)
49 PF06810 Phage_GP20: Phage min 34.5 2.3E+02 0.005 29.1 8.7 104 453-595 16-120 (155)
50 KOG2760 Vacuolar sorting prote 33.2 22 0.00048 41.6 1.5 62 161-225 176-242 (432)
51 KOG0933 Structural maintenance 32.1 1.4E+03 0.03 30.7 24.3 65 834-898 415-479 (1174)
52 KOG0980 Actin-binding protein 31.8 1.3E+03 0.029 30.3 24.5 63 668-730 363-428 (980)
53 PF15290 Syntaphilin: Golgi-lo 31.3 5.3E+02 0.012 29.6 11.4 73 709-802 72-144 (305)
54 KOG3758 Uncharacterized conser 31.2 7.4E+02 0.016 31.2 13.4 62 842-907 102-166 (655)
55 KOG4643 Uncharacterized coiled 30.3 1.5E+03 0.032 30.4 37.5 472 74-882 126-626 (1195)
56 KOG3091 Nuclear pore complex, 28.3 4.7E+02 0.01 32.0 11.0 126 377-531 378-503 (508)
57 PRK10869 recombination and rep 27.1 1.2E+03 0.026 28.4 18.5 11 794-804 294-304 (553)
58 KOG3691 Exocyst complex subuni 25.4 4.8E+02 0.01 34.0 10.7 75 758-832 79-155 (982)
59 PF08580 KAR9: Yeast cortical 25.3 1.5E+03 0.032 28.8 15.7 220 376-616 123-357 (683)
60 PF15290 Syntaphilin: Golgi-lo 25.2 2.5E+02 0.0055 32.0 7.7 60 767-827 74-155 (305)
61 PLN03229 acetyl-coenzyme A car 24.7 1.6E+03 0.035 29.0 22.5 92 360-465 384-494 (762)
62 PF06008 Laminin_I: Laminin Do 24.4 9.3E+02 0.02 26.1 14.9 84 666-749 123-208 (264)
63 PF09738 DUF2051: Double stran 24.4 7.8E+02 0.017 28.2 11.4 40 726-765 140-179 (302)
64 PRK03918 chromosome segregatio 24.3 1.5E+03 0.032 28.4 22.5 195 718-924 161-364 (880)
65 KOG1655 Protein involved in va 23.4 7.3E+02 0.016 27.3 10.3 70 837-910 124-197 (218)
66 PF08317 Spc7: Spc7 kinetochor 22.7 1.1E+03 0.025 26.5 19.0 18 662-679 129-146 (325)
67 PF11101 DUF2884: Protein of u 22.6 4.8E+02 0.01 28.2 9.1 95 196-291 96-218 (229)
68 KOG0946 ER-Golgi vesicle-tethe 22.3 1.9E+03 0.041 28.9 28.1 88 817-907 833-930 (970)
69 KOG4674 Uncharacterized conser 22.2 2.4E+03 0.053 30.2 39.7 55 842-896 443-497 (1822)
70 PF05701 WEMBL: Weak chloropla 22.0 1.5E+03 0.032 27.5 33.0 42 485-526 158-199 (522)
71 KOG0979 Structural maintenance 21.6 2E+03 0.044 29.1 22.8 44 836-879 315-358 (1072)
72 TIGR00634 recN DNA repair prot 21.1 1.5E+03 0.033 27.4 17.0 92 766-858 271-372 (563)
73 PF04899 MbeD_MobD: MbeD/MobD 21.0 6.2E+02 0.014 23.3 8.0 38 819-860 26-63 (70)
74 KOG0545 Aryl-hydrocarbon recep 20.9 62 0.0014 36.5 2.1 27 897-923 243-269 (329)
75 KOG0018 Structural maintenance 20.5 2.2E+03 0.048 29.0 21.0 258 385-808 226-491 (1141)
76 KOG4637 Adaptor for phosphoino 20.4 1.5E+03 0.033 27.2 12.8 20 773-792 165-184 (464)
No 1
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.40 E-value=13 Score=48.41 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhccch
Q 002225 835 ERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSS 909 (951)
Q Consensus 835 e~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSP 909 (951)
.....++..+..++.|+... +.+....|.++..++....+++..+|+-+...|+.|-.+...|=--++.-.|
T Consensus 898 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~ 969 (1311)
T TIGR00606 898 QSLIREIKDAKEQDSPLETF---LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969 (1311)
T ss_pred HHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556667777788888777 5555667888888888899999999999999999999999998544444344
No 2
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.60 E-value=31 Score=44.87 Aligned_cols=45 Identities=7% Similarity=0.187 Sum_probs=35.7
Q ss_pred hhcCCCCHH--HHHHhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHh
Q 002225 359 SNLKHMSKE--ELVNHFKAEMTKMKRIHELKVTEMTEDLFALKREYL 403 (951)
Q Consensus 359 s~LkhM~ke--eli~yfk~em~KMkR~HEs~lqeKTEELF~lKRE~l 403 (951)
.+++.|+.. ++..-|..-..|++-.|......+.+++..++-++.
T Consensus 366 ~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ 412 (1201)
T PF12128_consen 366 EQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKA 412 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666665 888888999999999999888888888877766664
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.42 E-value=58 Score=44.76 Aligned_cols=133 Identities=18% Similarity=0.283 Sum_probs=85.5
Q ss_pred HHHhHHHHHHHHHHhhHHHHHHHhHHHHHHH---HHHhhhcCCCCCcccccccHHHhhhHHHHHHhHHHHHhhcCCCccc
Q 002225 369 LVNHFKAEMTKMKRIHELKVTEMTEDLFALK---REYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDILVENEKLPAF 445 (951)
Q Consensus 369 li~yfk~em~KMkR~HEs~lqeKTEELF~lK---RE~lkerGSsl~lrkdkEfe~lRKKIpeVIsKLD~Il~~N~kl~~f 445 (951)
=+..+-..+..||+.|.-.+.+.++.+=-++ ..+.++++ .+..-+-++...+++..+....+.-+
T Consensus 1172 e~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~------------~lq~e~~~l~~ev~~~~~~k~~~e~~ 1239 (1930)
T KOG0161|consen 1172 ETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKS------------DLQREIADLAAELEQLSSEKKDLEKK 1239 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhhccHHHH
Confidence 3444567788999999888877776555444 44444432 34445566667777777666554432
Q ss_pred ccchhcccCchhhhhHHHhhhhhhhh-------hhhhhHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhhhh
Q 002225 446 SENAEGLCNFKDRLESLLLENRQLRS-------LLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDA 518 (951)
Q Consensus 446 ~~~~~~~~~lkdRi~sL~~EN~qLrd-------lLadk~kevk~lSsqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~ED~ 518 (951)
+... ..++-.+......+.. -.+..+++...+++|+.++..+.+.-+-....+-.||+.++..+++-
T Consensus 1240 ~k~~------E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e 1313 (1930)
T KOG0161|consen 1240 DKKL------EAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEE 1313 (1930)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1223333222222222 24456778888999999999999999999999999999998888764
Q ss_pred h
Q 002225 519 H 519 (951)
Q Consensus 519 ~ 519 (951)
.
T Consensus 1314 ~ 1314 (1930)
T KOG0161|consen 1314 T 1314 (1930)
T ss_pred H
Confidence 3
No 4
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.44 E-value=38 Score=40.65 Aligned_cols=172 Identities=18% Similarity=0.318 Sum_probs=122.4
Q ss_pred hhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHH
Q 002225 734 LSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQ 810 (951)
Q Consensus 734 ~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq---~~kQLe 810 (951)
.+.....++..+......-..-|.+....|+.+...+.+..+++...+.+..++...|...+.+-+++.++ ++..|.
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666667778889999999999999999999999999999998888888887777776 444554
Q ss_pred HHHHH-----HHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhh
Q 002225 811 LLVIF-----IQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDL 885 (951)
Q Consensus 811 silvs-----i~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDL 885 (951)
.+-.. +++++..|.++-..+...+++....|....--+.-+ .+-|..|...||-
T Consensus 425 ~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v---------------------~~~l~~a~~~v~~ 483 (560)
T PF06160_consen 425 EIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEV---------------------NKQLEEAEDDVET 483 (560)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------------------HHHHHHHHHHHHH
Confidence 44322 478888888887777766665444444332222222 2347788889999
Q ss_pred ccchHHHHHH---HHHHHHHHhhccchhhhcCcchHHHH---HHhhcc-cc
Q 002225 886 LGDEVDTLSG---LLEKIYIALDHYSSVLQHYPGVSFFF---FYCFCN-FN 929 (951)
Q Consensus 886 LGDeVd~LLs---LLeKIYiALDHYSPVLQHYpGV~d~l---~~~~~~-~~ 929 (951)
|-++++.++. |.+++..=-.+|- ..||.|-..| .+||-+ |+
T Consensus 484 L~~~t~~li~~A~L~E~~iQYaNRYR---~~~~~v~~al~~Ae~~F~~~~~ 531 (560)
T PF06160_consen 484 LEEKTEELIDNATLAEQLIQYANRYR---SDNPEVDEALTEAEDLFRNEYD 531 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---CCCHHHHHHHHHHHHHHHhhCC
Confidence 9999998875 5667666666663 3688888888 566766 54
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.53 E-value=84 Score=42.99 Aligned_cols=135 Identities=29% Similarity=0.306 Sum_probs=94.1
Q ss_pred ccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-------HHH
Q 002225 764 NDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVAD-------IER 836 (951)
Q Consensus 764 ~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQLesilvsi~~lsk~f~dfE~~v~~k-------le~ 836 (951)
...+.+|..|+.++..|+.....+-+.|..+-..+-++..+....++..-.-+..+-.-.++++..+... .+.
T Consensus 915 ~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~ 994 (1822)
T KOG4674|consen 915 TDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKG 994 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3578899999999999999999999999988888888887777777666666666666666666655442 344
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHH-------hh----HHHHhhccchHHHHHHHHH
Q 002225 837 CNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQ-------KA----EAEVDLLGDEVDTLSGLLE 898 (951)
Q Consensus 837 n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLq-------KA----EaEVDLLGDeVd~LLsLLe 898 (951)
.+.++.+++.+.+++-...-.+.....-|-..+.+-..+|. +| |-++-.+||-+.+|..|=+
T Consensus 995 ~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~e 1067 (1822)
T KOG4674|consen 995 KEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLRE 1067 (1822)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777766666666655555555444443 33 4556677777766655433
No 6
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.96 E-value=86 Score=40.82 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=88.3
Q ss_pred hhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHh
Q 002225 742 LSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLLVIFIQG 818 (951)
Q Consensus 742 l~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq---~~kQLesilvsi~~ 818 (951)
...+|.+...-+.-|.+-..+.++....+..+.+.+..++-+..++.....-+-...++.... .+||+.-+=.-.
T Consensus 311 ~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~-- 388 (1074)
T KOG0250|consen 311 IEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT-- 388 (1074)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 334443333333334444445555566666666666666666666665555444443333222 333332221111
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHH---HHhhhHHHhhH---------------
Q 002225 819 LSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKL---ERRCSDLQKAE--------------- 880 (951)
Q Consensus 819 lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~l---e~RcsnLqKAE--------------- 880 (951)
-+...---..+.+|++.-..+.+.+..|.+.|.+.-+.++.+...=+... +++.-+|+|+-
T Consensus 389 -~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 389 -NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred -HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01111111223445566666666677777777776666666555444433 23344444432
Q ss_pred HHHhhccchHHHHHHHHHHHHHHhhccchh
Q 002225 881 AEVDLLGDEVDTLSGLLEKIYIALDHYSSV 910 (951)
Q Consensus 881 aEVDLLGDeVd~LLsLLeKIYiALDHYSPV 910 (951)
..|---|+.|..||..++.-|.-. ||-|+
T Consensus 468 dkvs~FG~~m~~lL~~I~r~~~~f-~~~P~ 496 (1074)
T KOG0250|consen 468 DKVSAFGPNMPQLLRAIERRKRRF-QTPPK 496 (1074)
T ss_pred chhhhcchhhHHHHHHHHHHHhcC-CCCCC
Confidence 137789999999999999988876 56554
No 7
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.72 E-value=71 Score=38.41 Aligned_cols=179 Identities=20% Similarity=0.250 Sum_probs=104.5
Q ss_pred hhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHH
Q 002225 736 KSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLL 812 (951)
Q Consensus 736 elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq---~~kQLesi 812 (951)
.....++..+......-..-+.+....|+.+...+.+..+++...+.+..++...+......-.++.++ .++.+..+
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555445556777777888888888888888877777777777777666665555554 33333222
Q ss_pred H----H-HHHhHHHHHHHHHHHH---------------------HHhHHHhhhhhhhhHHhhHHHHHHHHHHh---hhhh
Q 002225 813 V----I-FIQGLSKTVADFECRA---------------------VADIERCNFRLDSLSSQSKRLILKANVIT---RTGL 863 (951)
Q Consensus 813 l----v-si~~lsk~f~dfE~~v---------------------~~kle~n~~Rle~L~~q~~~Lv~qa~~Lk---kk~l 863 (951)
= . .++++...|.+.-..+ ...++....|+..|..|...|+..+..+. ..+-
T Consensus 431 kr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~n 510 (569)
T PRK04778 431 KRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYAN 510 (569)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 0 1233333333332222 22445577889999999999998887765 2355
Q ss_pred HHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhccchhhhcCcchHHHHHHhh
Q 002225 864 SYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGVSFFFFYCF 925 (951)
Q Consensus 864 ~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQHYpGV~d~l~~~~ 925 (951)
+|+..+..=-.++++||.=. -=||=- .-|+.|-.||+.. -||+++=+...|
T Consensus 511 Rfr~~~~~V~~~f~~Ae~lF-~~~~Y~----~al~~~~~alE~v------ePG~~~ri~~~y 561 (569)
T PRK04778 511 RYRSDNEEVAEALNEAERLF-REYDYK----AALEIIATALEKV------EPGVTKRIEDSY 561 (569)
T ss_pred ccCCCCHHHHHHHHHHHHHH-HhCChH----HHHHHHHHHHHhh------CCcHHHHHHHHH
Confidence 55555555566677776522 222211 1234444555544 368887776544
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.64 E-value=43 Score=35.80 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=34.4
Q ss_pred HhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 002225 729 LEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRD 800 (951)
Q Consensus 729 ~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE 800 (951)
...-+.++.+-.++...+.....-+.-..+-.+-+.++-+.++.|-+........+..|...|..+.+.|+.
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 333344555555555444444333333334444444455555555555555555555555555555554444
No 9
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.58 E-value=86 Score=39.20 Aligned_cols=135 Identities=22% Similarity=0.230 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHH
Q 002225 710 LSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQ 789 (951)
Q Consensus 710 l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~ 789 (951)
|-.-.++|++-++.....|. --+..++.|-+.+..|+.++.++..+-+.+...|+.+=.-...+...-..|..
T Consensus 245 L~~q~~eKen~~kdl~~~l~-------es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~ 317 (786)
T PF05483_consen 245 LQTQLKEKENKIKDLLLLLQ-------ESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEE 317 (786)
T ss_pred HHHHHHhhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344799999999988544 34455677888889999999999888888888888666666666556677777
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---hHHHhhhhhhhhHHhhHHH
Q 002225 790 KLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVA---DIERCNFRLDSLSSQSKRL 851 (951)
Q Consensus 790 ~L~~~s~~LkE~~eq~~kQLesilvsi~~lsk~f~dfE~~v~~---kle~n~~Rle~L~~q~~~L 851 (951)
.|.+++..+-.+..+...||+-.=..-..-+-.+++|+++++. -+..-..|++.+.+|++.+
T Consensus 318 ~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l 382 (786)
T PF05483_consen 318 DLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKIL 382 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888877776666665555544433333334445556665554 2223334555555555444
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=86.23 E-value=1e+02 Score=38.77 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=4.2
Q ss_pred hccccccc
Q 002225 160 IDRIKGCS 167 (951)
Q Consensus 160 i~~~~~~~ 167 (951)
|.++++|.
T Consensus 7 l~nf~s~~ 14 (1164)
T TIGR02169 7 LENFKSFG 14 (1164)
T ss_pred EeCeeeEC
Confidence 45555554
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.94 E-value=1.9e+02 Score=38.36 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=16.9
Q ss_pred hhhhHHhhHHHHHHHHHHHhhhhhhhhccccchhh
Q 002225 194 WMDVDKALDSLRTTLDTIFNCADNTVYLSKASLCQ 228 (951)
Q Consensus 194 ~~~vd~~~d~Lk~~ld~vf~~~~~m~~l~~~s~~~ 228 (951)
+-.+.+.+......++.+-+..+.-+.-....+.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~e 430 (1311)
T TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADE 430 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444333333333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.95 E-value=1.7e+02 Score=36.66 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=18.6
Q ss_pred hhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhH
Q 002225 456 KDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDT 490 (951)
Q Consensus 456 kdRi~sL~~EN~qLrdlLadk~kevk~lSsqvSdA 490 (951)
..++......-..+.|.+.+....+..|..|+..|
T Consensus 171 ~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a 205 (1179)
T TIGR02168 171 KERRKETERKLERTRENLDRLEDILNELERQLKSL 205 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555566666555555555555555
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=78.08 E-value=1.9e+02 Score=36.09 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=5.1
Q ss_pred cccchhhHHH
Q 002225 650 FEDCDMESVI 659 (951)
Q Consensus 650 f~~~~mEs~i 659 (951)
|.+...+.++
T Consensus 461 ~~~~~~~~~~ 470 (880)
T PRK02224 461 VEGSPHVETI 470 (880)
T ss_pred CCCcchhhhH
Confidence 5555554443
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=75.87 E-value=2.2e+02 Score=35.74 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=6.8
Q ss_pred ccEEEeeecc
Q 002225 57 DRLTISRMVS 66 (951)
Q Consensus 57 ~rl~isr~vs 66 (951)
+.++|.|.+.
T Consensus 96 ~~~~i~r~~~ 105 (1179)
T TIGR02168 96 SEISITRRLY 105 (1179)
T ss_pred CeEEEEEEEe
Confidence 4578888763
No 15
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.50 E-value=2.9e+02 Score=36.93 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=40.1
Q ss_pred hhhcCCCCCcccccccHHHhhhHHHHHHhHHHHHhhcCCCcccccchhcccCchhhhhHHHhhhhhhhhhhhhhHHHhhh
Q 002225 403 LKERGSSLPIKKDKEFDILRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKDRLESLLLENRQLRSLLTDKKNEVKR 482 (951)
Q Consensus 403 lkerGSsl~lrkdkEfe~lRKKIpeVIsKLD~Il~~N~kl~~f~~~~~~~~~lkdRi~sL~~EN~qLrdlLadk~kevk~ 482 (951)
||.-|. ---.+-+|..|.+|+.+|= .||+.- +-...+...+-.-+.+|....+-++.-|+.....+-.
T Consensus 1190 l~~tGv--~gay~s~f~~me~kl~~ir----~il~~~------svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsd 1257 (1758)
T KOG0994|consen 1190 LKQTGV--LGAYASRFLDMEEKLEEIR----AILSAP------SVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSD 1257 (1758)
T ss_pred hhhccC--chhhHhHHHHHHHHHHHHH----HHhcCC------CccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 455455 2245667888888887763 334221 2233444455555566666656555555555544433
Q ss_pred hhhhhhhH
Q 002225 483 LSLKVSDT 490 (951)
Q Consensus 483 lSsqvSdA 490 (951)
.-++++-|
T Consensus 1258 i~~~~~~a 1265 (1758)
T KOG0994|consen 1258 ITNSLPLA 1265 (1758)
T ss_pred hhhccchh
Confidence 33344433
No 16
>PLN02939 transferase, transferring glycosyl groups
Probab=75.20 E-value=1.5e+02 Score=38.55 Aligned_cols=209 Identities=21% Similarity=0.218 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhhHh--hhhHHHHHHHhHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhhhhhhhhhHHHhhhhh
Q 002225 670 EALKEAEVKLNELNQK--YFMETELRRLEVAEKEKLKQETRLLSSLVEE-KENLVSEAVATLLEEKDLSKSLSQELSHLR 746 (951)
Q Consensus 670 e~vkEae~~L~~~~~k--~~lEeEil~L~~~e~eKlk~~i~~l~aLvkE-KE~Li~~a~~~l~ee~~~~elv~qel~~Lr 746 (951)
.|++++++.+--++.. ..++. +--.-.++|.|++++..|..=+.| .+++-..+ |.+...++...++..||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 207 (977)
T PLN02939 135 GMIQNAEKNILLLNQARLQALED--LEKILTEKEALQGKINILEMRLSETDARIKLAA-----QEKIHVEILEEQLEKLR 207 (977)
T ss_pred HHHHHHHhhhHhHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhh-----hccccchhhHHHHHHHh
Confidence 6888888888433333 11221 001123467777777766554433 22222222 23567888888898888
Q ss_pred hhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002225 747 DETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADF 826 (951)
Q Consensus 747 ~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQLesilvsi~~lsk~f~df 826 (951)
....+... ++- +++..-.++....|+|-.-|+..++.....|-++.+- =.++..|.|.-.-+
T Consensus 208 ~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 269 (977)
T PLN02939 208 NELLIRGA--TEG--------LCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAET--------EERVFKLEKERSLL 269 (977)
T ss_pred hhhhcccc--ccc--------cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHH
Confidence 75422211 111 1222223344445555544554444333333222111 01122222222222
Q ss_pred HHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhc
Q 002225 827 ECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDH 906 (951)
Q Consensus 827 E~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDH 906 (951)
+..+ ...+.|+ ++-|..+.+-..+ ++|.+=++|++|-.||.+.--.-+|
T Consensus 270 ~~~~----~~~~~~~---------~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (977)
T PLN02939 270 DASL----RELESKF---------IVAQEDVSKLSPL------------------QYDCWWEKVENLQDLLDRATNQVEK 318 (977)
T ss_pred HHHH----HHHHHHH---------Hhhhhhhhhccch------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1122222 3334444333222 3455788999999999999999999
Q ss_pred cchhhhcCcchHH---HHHHhhccccccccc
Q 002225 907 YSSVLQHYPGVSF---FFFYCFCNFNVSEFS 934 (951)
Q Consensus 907 YSPVLQHYpGV~d---~l~~~~~~~~~~~~~ 934 (951)
|.-||+|+-.+.+ -|.-..-.-|++.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (977)
T PLN02939 319 AALVLDQNQDLRDKVDKLEASLKEANVSKFS 349 (977)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHhhhh
Confidence 9999999987754 444455555666664
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=69.97 E-value=3.6e+02 Score=35.51 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHH
Q 002225 834 IERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDT 892 (951)
Q Consensus 834 le~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~ 892 (951)
++.....+..+..++..+.....-+.+.=.+++..+......++.+++..|-|.....+
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566667777778888877777777777777888888888888888877777665544
No 18
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.05 E-value=1.6e+02 Score=31.26 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=103.6
Q ss_pred HHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 002225 725 VATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE 804 (951)
Q Consensus 725 ~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq 804 (951)
.+.+.+-+..++-+..|...||..-..|..-|......-+-+|.-+..--+.+..++..+.........+...+++.+.+
T Consensus 18 ~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~e 97 (194)
T PF15619_consen 18 QNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEE 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334434456666777888888888888888888888888888887777788888888888888888888888887777
Q ss_pred HHHHHHHHHHHHHhHHHHHH-----HHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhh
Q 002225 805 TRKQVQLLVIFIQGLSKTVA-----DFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKA 879 (951)
Q Consensus 805 ~~kQLesilvsi~~lsk~f~-----dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKA 879 (951)
.. .+-.-+..|.+... +- .....++.....+++.-......|-+++-. ....|++.+-.-..-...|
T Consensus 98 l~----k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL---~~k~~~rql~~e~kK~~~~ 169 (194)
T PF15619_consen 98 LL----KTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLEL---ENKSFRRQLASEKKKHKEA 169 (194)
T ss_pred HH----HHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHH
Confidence 21 12111222222221 11 112223334444444444444444444222 2334555555555566778
Q ss_pred HHHHhhccchHHHHHHHHH
Q 002225 880 EAEVDLLGDEVDTLSGLLE 898 (951)
Q Consensus 880 EaEVDLLGDeVd~LLsLLe 898 (951)
.++|..|-++|+.|-+-|.
T Consensus 170 ~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 170 QEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999998876653
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.53 E-value=3.9e+02 Score=35.36 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=81.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHH
Q 002225 704 KQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLE 783 (951)
Q Consensus 704 k~~i~~l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~e 783 (951)
.+.+..++.=+++++.-+.....+-..+...++-+.+.+..+|-....-+..|-+........+.++..--.+|..++.+
T Consensus 308 ~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 308 QGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444566666666666666666667777777777777666666666666666666666666666666666555
Q ss_pred H-HHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHH---HHhHHHhhhhhhhhHHhhHHH
Q 002225 784 V-HDLKQKLELAMKELRDTNEE---TRKQVQLLVIFIQGLSKTVADFECRA---VADIERCNFRLDSLSSQSKRL 851 (951)
Q Consensus 784 l-~~L~~~L~~~s~~LkE~~eq---~~kQLesilvsi~~lsk~f~dfE~~v---~~kle~n~~Rle~L~~q~~~L 851 (951)
+ ..++..+...-+.++....+ .+.|+.++-.-...+-....+-+... ..++-+....+++.+.+++.|
T Consensus 388 ~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 388 TNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55555555554444444443 44455555444555544444433332 122233333444444444444
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.85 E-value=3e+02 Score=33.86 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=17.9
Q ss_pred cccccccHHHHHHHHHHhHHHHHHHHHHH
Q 002225 763 FNDLKGNLTDALEQIEQYKLEVHDLKQKL 791 (951)
Q Consensus 763 ~~~~~~~l~~aLeqi~~~K~el~~L~~~L 791 (951)
.+.+.....++-+++..++..+..|.+..
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666555
No 21
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.74 E-value=3.4e+02 Score=34.41 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=98.7
Q ss_pred hhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002225 734 LSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLV 813 (951)
Q Consensus 734 ~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQLesil 813 (951)
++..+.-.++.||-++..-...|-+--.+-..++-.+..-..+...|...|++|...+..+-.-..|+.+.+.+-+++=-
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~ 667 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS 667 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 44455555666666665555555555555556666667777888899999999998888777777777777888887776
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHH
Q 002225 814 IFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQ 877 (951)
Q Consensus 814 vsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLq 877 (951)
++=.+|...+.....++.+-++ ..+=.+++||- -++.-|+..-|--.-|-+|++-|-+.|-
T Consensus 668 ~~e~~L~~EveK~k~~a~EAvK--~q~EtdlrCQh-KIAeMVALMEKHK~qYDkiVEEkDaEL~ 728 (786)
T PF05483_consen 668 ISEEELLGEVEKAKLTADEAVK--LQEETDLRCQH-KIAEMVALMEKHKHQYDKIVEEKDAELG 728 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7777888777777777766433 12334555553 3456677788888899999999988874
No 22
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=66.03 E-value=3.1e+02 Score=33.30 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHHhhHHHHhhccchHHHHHHHHHHHHHHhhccchhhhcCcchHHHHHHhh
Q 002225 875 DLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGVSFFFFYCF 925 (951)
Q Consensus 875 nLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQHYpGV~d~l~~~~ 925 (951)
++..|++.++-+.+++|+|-+.|+|=+-|=+ -|-+++|.+.+.+...-
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~---~V~~~~~~l~~~l~~~~ 319 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKK---YVEKNLKELYEYLEHAK 319 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHH
Confidence 6778999999999999999999999887744 46677777776664433
No 23
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.39 E-value=2.4e+02 Score=31.88 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=53.2
Q ss_pred hHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 002225 738 LSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE 804 (951)
Q Consensus 738 v~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq 804 (951)
+..+|+.--++-.+++.-++.++..|...+...+.....+....-+-..+...-+.+-..|-++.++
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~ee 280 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEE 280 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455777778888999999999999999988888888888888777777777777666666665555
No 24
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.07 E-value=4.6e+02 Score=34.35 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhHH
Q 002225 498 SLTEENLVKRIGNLQGALDDAHIEA 522 (951)
Q Consensus 498 s~~Ee~L~kqI~kLk~d~ED~~IE~ 522 (951)
+.+|++|..|++.|.+.+|-++...
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR 247 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKR 247 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhh
Confidence 6688889999999999999998853
No 25
>PRK11637 AmiB activator; Provisional
Probab=63.05 E-value=2.9e+02 Score=31.99 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=31.7
Q ss_pred hhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHH
Q 002225 841 LDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIY 901 (951)
Q Consensus 841 le~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIY 901 (951)
...+..+...+..+-..|...---.++.+..=-.+++..++++.=|..+...|-.+|.++-
T Consensus 193 ~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 193 QSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333334444444555556666666666767777777654
No 26
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.18 E-value=3.1e+02 Score=33.84 Aligned_cols=130 Identities=25% Similarity=0.298 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhh---Hh-hhhH--HHHHHHhHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHHHHHh---hh
Q 002225 668 FREALKEAEVKLNELN---QK-YFME--TELRRLEVAEKEKLKQETRLLSSLVEEK------ENLVSEAVATLLE---EK 732 (951)
Q Consensus 668 lke~vkEae~~L~~~~---~k-~~lE--eEil~L~~~e~eKlk~~i~~l~aLvkEK------E~Li~~a~~~l~e---e~ 732 (951)
+++..+.|+..-+++. .+ .-.. .+.+.+...+-++++....-.+.|..++ +++.+.+..+... +.
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~ 238 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGED 238 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence 5566666666554222 22 1122 5556666666666666444444455443 4444444333221 11
Q ss_pred hhhhhhHHHhhhhhhhhHhHhHH--hhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 002225 733 DLSKSLSQELSHLRDETSRQQIL--ISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE 804 (951)
Q Consensus 733 ~~~elv~qel~~Lr~~~~~q~~l--Ise~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq 804 (951)
+.+.. +.++.. --+.| +++....|..+...+.+|+-++...-.++...-+.|+.-+..|.++++.
T Consensus 239 ~~~~~----~~~l~~---a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~R 305 (557)
T COG0497 239 DTVSA----LSLLGR---ALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEER 305 (557)
T ss_pred CchhH----HHHHHH---HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 10111 111211 11122 6667777777888888888888888888888888888888888888877
No 27
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=55.71 E-value=3.8e+02 Score=30.96 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=77.7
Q ss_pred hhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHHHHHH
Q 002225 744 HLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE----------TRKQVQLLV 813 (951)
Q Consensus 744 ~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq----------~~kQLesil 813 (951)
.||.+...++..-.+. ....-++.=+..+.|+...+.....|...+....+++.|+..+ +-.+|..++
T Consensus 104 lLR~~la~~r~~~~~~--~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 104 LLREKLARQRVGDEGI--GARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred HHHHHHHhhhhhhccc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777666665533222 2222224455666677777777777777777777777777776 222233333
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhH
Q 002225 814 IFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSD 875 (951)
Q Consensus 814 vsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~Rcsn 875 (951)
. +=..-+.||++.+.+ .| .|..+++.+-...+.++..-.-||.|+++|+++
T Consensus 182 ~---g~~~rivDIDaLi~E------NR--yL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~ 232 (319)
T PF09789_consen 182 N---GDENRIVDIDALIME------NR--YLKERLKQLQEEKELLKQTINKYKSALERKRKK 232 (319)
T ss_pred C---CCCCCcccHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2 111234578877753 23 588899999999999999999999999987664
No 28
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=55.29 E-value=2e+02 Score=28.80 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhh
Q 002225 781 KLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITR 860 (951)
Q Consensus 781 K~el~~L~~~L~~~s~~LkE~~eq~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkk 860 (951)
..++.++...++ ..|+++.+++-...++.+.++..++..+.+=..++. ....+|...+..+..-......|-.
T Consensus 42 ~~~f~~~~~~~~---~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~----~lK~~L~~ak~~L~~~~~eL~~L~~ 114 (142)
T PF04048_consen 42 YQEFEELKKRIE---KALQEVVNEHYQGFNSSIGSYSQILSSISESQERIR----ELKESLQEAKSLLGCRREELKELWQ 114 (142)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 355555555555 778888888777788888888777777776665554 3345566666666555566666777
Q ss_pred hhhHHHHHHHH--hhhHHHhhHHHHhh
Q 002225 861 TGLSYKQKLER--RCSDLQKAEAEVDL 885 (951)
Q Consensus 861 k~l~YKq~le~--RcsnLqKAEaEVDL 885 (951)
.+.-|++|++. ...+|+.++.+||=
T Consensus 115 ~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 115 RSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 78889998874 67788888877763
No 29
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=53.76 E-value=43 Score=37.74 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhh
Q 002225 806 RKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRT 861 (951)
Q Consensus 806 ~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk 861 (951)
++.+..++.++..|.+++.|+..++..+++++..|++.+..+.+..-.++..|+..
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46677788899999999999999999999999999999999999998888887654
No 30
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=53.45 E-value=1e+02 Score=30.80 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=36.3
Q ss_pred hhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------hhhhHHH--HHHHHHHHHHHHHhHHHHHHHH
Q 002225 757 SKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKE-------LRDTNEE--TRKQVQLLVIFIQGLSKTVADF 826 (951)
Q Consensus 757 se~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~-------LkE~~eq--~~kQLesilvsi~~lsk~f~df 826 (951)
.+.-..|+...+....++..+..++..+..++.+|..+... |+++..+ .-++|=.++..|..+.++-..+
T Consensus 61 ~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~ki 139 (142)
T PF04048_consen 61 NEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKI 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555555555555555555555555555555555444 5554444 3333444455555555444433
No 31
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=52.67 E-value=3.1e+02 Score=34.60 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=78.9
Q ss_pred hhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002225 734 LSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLV 813 (951)
Q Consensus 734 ~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQLesil 813 (951)
+++.++++...||.+...=..=|. .+.+...+.++. . .+|...+.+++.+.+.|+|++.=
T Consensus 71 ev~~l~~ea~~L~~~~~~v~~~~~-------~~e~~t~~s~~~---L-~~ld~vK~rm~~a~~~L~EA~~w--------- 130 (766)
T PF10191_consen 71 EVDRLRQEAASLQEQMASVQEEIK-------AVEQDTAQSMAQ---L-AELDSVKSRMEAARETLQEADNW--------- 130 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hhhccHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHhH---------
Confidence 566677777777776543222111 122222233332 2 55777889999999999997654
Q ss_pred HHHHhHHHHHHHHHHHHHH-hHHHhhhhhhhhHHhhHHHHHHH---HHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccc-
Q 002225 814 IFIQGLSKTVADFECRAVA-DIERCNFRLDSLSSQSKRLILKA---NVITRTGLSYKQKLERRCSDLQKAEAEVDLLGD- 888 (951)
Q Consensus 814 vsi~~lsk~f~dfE~~v~~-kle~n~~Rle~L~~q~~~Lv~qa---~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGD- 888 (951)
+..+.+++..+.. .+.....||..|+.-+.-+..-. ...+.-+ .+|.+||.-.+ -.. |.-|-.
T Consensus 131 ------~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le-~l~nrLEa~vs----p~L-v~al~~~ 198 (766)
T PF10191_consen 131 ------STLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLE-ALKNRLEALVS----PQL-VQALNSR 198 (766)
T ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHHHhh----HHH-HHHHHhc
Confidence 2222222222222 45555556666655555443211 1111111 22333333222 111 222222
Q ss_pred hHHHHHHHHHHHHHHhhccchhhhcCcchHHHH
Q 002225 889 EVDTLSGLLEKIYIALDHYSSVLQHYPGVSFFF 921 (951)
Q Consensus 889 eVd~LLsLLeKIYiALDHYSPVLQHYpGV~d~l 921 (951)
.||..- -+-+||..+++.+-.+++|-.+.-.-
T Consensus 199 ~~~~~~-~~~~if~~i~R~~~l~~~Y~~~r~~~ 230 (766)
T PF10191_consen 199 DVDAAK-EYVKIFSSIGREPQLEQYYCKCRKAP 230 (766)
T ss_pred CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 233333 34489999999999999998776544
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.94 E-value=7.7e+02 Score=33.44 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=68.7
Q ss_pred HHhHHHHHhhcCCCccccc------chhcccCchhhhh------HHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHHHh
Q 002225 429 LSKLDDILVENEKLPAFSE------NAEGLCNFKDRLE------SLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQ 496 (951)
Q Consensus 429 IsKLD~Il~~N~kl~~f~~------~~~~~~~lkdRi~------sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~s~ 496 (951)
+.++++.+=.+...|.... ..+..|+..+=.+ --+.--.+..--|..+..++.++++-|++|-...|.
T Consensus 1368 L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~ase 1447 (1758)
T KOG0994|consen 1368 LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASE 1447 (1758)
T ss_pred CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4567777777776665221 1134555443223 233333344445566677777888888888777776
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhcccchhHHHHHHHHHHHHH
Q 002225 497 RSLTEENLVKRIGNLQGALDDAHIEASITEGVYKCLLGEAADFIKSVSKKSDLEYELMQEVYEIIF 562 (951)
Q Consensus 497 ~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE~VYkc~lre~v~~~~~~~e~~~le~~i~~EIy~iil 562 (951)
-..+=+..+.+...-++..+ .+++| |+.++.+++.+....+..-.-.+++-+-||
T Consensus 1448 A~~~Aq~~~~~a~as~~q~~-----~s~~e------l~~Li~~v~~Flt~~~adp~si~~vA~~vL 1502 (1758)
T KOG0994|consen 1448 AQQSAQRALEQANASRSQME-----ESNRE------LRNLIQQVRDFLTQPDADPDSIEEVAEEVL 1502 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHH------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 55555555555555444433 33343 555666666666665555555555554444
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.86 E-value=8.3e+02 Score=32.95 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---hHHHhhhhhhhhHH
Q 002225 770 LTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVA---DIERCNFRLDSLSS 846 (951)
Q Consensus 770 l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQLesilvsi~~lsk~f~dfE~~v~~---kle~n~~Rle~L~~ 846 (951)
++.+-..+..+..++..|...+......|.+....+.+.-.-+-.-+.++.+..+.+...+.+ ++.-.+++|+.|..
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLS 514 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777777666665555544443333333444456666666666555433 44556667777777
Q ss_pred hhHHHHHHHHHHhhhhhH--------------HHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhccchhhh
Q 002225 847 QSKRLILKANVITRTGLS--------------YKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQ 912 (951)
Q Consensus 847 q~~~Lv~qa~~Lkkk~l~--------------YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQ 912 (951)
.-+...+++-.|+.+=+. .+.-|..+--.+..++.+++=+=-+.-.|-+.|.+..--+.-|+..++
T Consensus 515 ~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 515 RHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665544333 233444555567778888888888888888888888887877777554
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=48.08 E-value=6.6e+02 Score=31.54 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=27.2
Q ss_pred hhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHH
Q 002225 840 RLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSG 895 (951)
Q Consensus 840 Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLs 895 (951)
+++.....+..+-+++..|+..---|+...+.--+.+..++.++.-+=.++..+.+
T Consensus 531 ~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 586 (880)
T PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555554444444444444444444444444433
No 35
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.66 E-value=4.2e+02 Score=33.46 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.3
Q ss_pred HHHhhcccEEEeee
Q 002225 51 YWDDINDRLTISRM 64 (951)
Q Consensus 51 ~~edi~~rl~isr~ 64 (951)
+|+..+-||+.-+.
T Consensus 46 vWd~~e~~l~~~nl 59 (717)
T PF10168_consen 46 VWDSSECCLLTVNL 59 (717)
T ss_pred EEECCCCEEEEEee
Confidence 46666666655543
No 36
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=45.15 E-value=7.8e+02 Score=31.56 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=41.2
Q ss_pred HHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccH------H--HHHHHHHHhHHHHHHHHHHHHHHHH
Q 002225 725 VATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNL------T--DALEQIEQYKLEVHDLKQKLELAMK 796 (951)
Q Consensus 725 ~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l------~--~aLeqi~~~K~el~~L~~~L~~~s~ 796 (951)
..++..|.....-....++.+|.-...-+.-.......||...+.+ . +|.++...|-.++.+|++.|..+-.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555566655544433333334445566666644 2 5666666777777888877776655
Q ss_pred H
Q 002225 797 E 797 (951)
Q Consensus 797 ~ 797 (951)
.
T Consensus 602 ~ 602 (961)
T KOG4673|consen 602 Q 602 (961)
T ss_pred H
Confidence 5
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.67 E-value=4.8e+02 Score=28.99 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHH
Q 002225 805 TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILK 854 (951)
Q Consensus 805 ~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~q 854 (951)
.++++...-..+..+-+-|.+.+..+...+....--...+.++..+|+..
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555666666677776666655544443344444555555444
No 38
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=43.61 E-value=64 Score=33.59 Aligned_cols=100 Identities=31% Similarity=0.398 Sum_probs=69.6
Q ss_pred HHHHHHhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHhhhcCCCCCcccccccHHHhhhHHHHHHhHH---HHHhhcCC-
Q 002225 366 KEELVNHFKAEMTKMKRIHELKVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLD---DILVENEK- 441 (951)
Q Consensus 366 keeli~yfk~em~KMkR~HEs~lqeKTEELF~lKRE~lkerGSsl~lrkdkEfe~lRKKIpeVIsKLD---~Il~~N~k- 441 (951)
+|+.|---|-|+..=.-.+-+.+++.|..|-.++.|+ .+-.-|.|+ |.+.+||||..|=--|+ ..-...++
T Consensus 39 kEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeL---E~l~dP~Rk--Ev~~vRkkID~vNreLkpl~~~cqKKEkE 113 (159)
T PF04949_consen 39 KEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREEL---EVLADPMRK--EVEMVRKKIDSVNRELKPLGQSCQKKEKE 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhhccchHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455555555555555567788899999999999998 233346664 78899999987744443 44444443
Q ss_pred ----CcccccchhcccCchhhhhHHHhhhhhhh
Q 002225 442 ----LPAFSENAEGLCNFKDRLESLLLENRQLR 470 (951)
Q Consensus 442 ----l~~f~~~~~~~~~lkdRi~sL~~EN~qLr 470 (951)
+.+|+..+.+-|-|-.|+-.|++|...+|
T Consensus 114 ykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 114 YKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777888888888888888776665
No 39
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.92 E-value=3.8e+02 Score=27.35 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH--HHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhh-------HH
Q 002225 782 LEVHDLKQKLELAMKELRDTNEE--TRKQVQLLV--IFIQGLSKTVADFECRAVADIERCNFRLDSLSSQS-------KR 850 (951)
Q Consensus 782 ~el~~L~~~L~~~s~~LkE~~eq--~~kQLesil--vsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~-------~~ 850 (951)
.++.+++-.+-...+.+..+..+ +.+++--.+ +=|..|--....+-. +|+.-+.-|..|+..+ +|
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~----kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNE----KIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555 233332222 112222222222222 3333334444444444 44
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhccchhhhcCcchH
Q 002225 851 LILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGVS 918 (951)
Q Consensus 851 Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQHYpGV~ 918 (951)
.-++...+.....+.++.+..|...+.++..+.--+--+-+.+-....++-....-| ++|+|+
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~-----~~P~ll 144 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL-----GVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCcHHH
Confidence 555555555666777788888888888888887777777777777777765444333 667776
No 40
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.70 E-value=6.2e+02 Score=32.08 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=10.0
Q ss_pred hhhhHHhhHHHHHHHHHHhh
Q 002225 841 LDSLSSQSKRLILKANVITR 860 (951)
Q Consensus 841 le~L~~q~~~Lv~qa~~Lkk 860 (951)
|..+..+...+|++++.+++
T Consensus 694 L~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 694 LKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443
No 41
>PRK11637 AmiB activator; Provisional
Probab=41.21 E-value=6.3e+02 Score=29.33 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002225 774 LEQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQ 808 (951)
Q Consensus 774 Leqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQ 808 (951)
-+++...+.++..|...+......+....+.+.++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455544444444444444443333
No 42
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=40.17 E-value=5.8e+02 Score=28.64 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhh
Q 002225 702 KLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRD 747 (951)
Q Consensus 702 Klk~~i~~l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~~Lr~ 747 (951)
.+...+.-+..|....+..+..+...|.++...-+....+.+..||
T Consensus 74 ~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w 119 (342)
T cd08915 74 NIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRW 119 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccC
Confidence 4444444455555566666666666666666666666666655555
No 43
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.11 E-value=6.4e+02 Score=28.80 Aligned_cols=104 Identities=17% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHHhhhhhhhhcchhH-HHHHHHHHHH---hhhhhccccCCCCCcccccchhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 002225 605 LLREAVDSIKSVSEKSDLE-YELMQEVYGI---IFSDAAHNATPGSTCAFEDCDMESVIMQDLYEVIFREALKEAEVKLN 680 (951)
Q Consensus 605 llrE~vkE~k~~~e~~~le-~~~~~eiy~~---i~~~~a~n~~~~s~~~f~~~~mEs~i~Ed~~~Vilke~vkEae~~L~ 680 (951)
++.-.|+|.++-+.+..-- ..+-+++|.+ +|++|.. +++.-+.-. +...-.--+-++.--|.+==+|+.++-
T Consensus 67 lY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~-a~~d~r~lm---~~Qf~lvK~~aRl~ak~~WYeWR~kll 142 (312)
T smart00787 67 LYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFS-ASPDVKLLM---DKQFQLVKTFARLEAKKMWYEWRMKLL 142 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHc-CCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777665532 3344556754 7888874 444311110 011122233466667777778888882
Q ss_pred HhhHhhhhHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 002225 681 ELNQKYFMETELRRLEVAEKEKLKQETRLLSSLV 714 (951)
Q Consensus 681 ~~~~k~~lEeEil~L~~~e~eKlk~~i~~l~aLv 714 (951)
-.++..+. +.+-.+..+.+.|......++.++
T Consensus 143 -egLk~~L~-~~~~~l~~D~~~L~~~~~~l~~~~ 174 (312)
T smart00787 143 -EGLKEGLD-ENLEGLKEDYKLLMKELELLNSIK 174 (312)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222 223334444555555444444433
No 44
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.05 E-value=8.4e+02 Score=31.32 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=68.4
Q ss_pred ccHHHhhhHHHHHHhHHHHHhhcCCCcccccch--hcccCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHH
Q 002225 417 EFDILRKKIPEVLSKLDDILVENEKLPAFSENA--EGLCNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIM 494 (951)
Q Consensus 417 Efe~lRKKIpeVIsKLD~Il~~N~kl~~f~~~~--~~~~~lkdRi~sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~ 494 (951)
.+|.+.-||..-|.++|.=|..+.+--++.-.. +.+|...+=+.+|.++.+.+|+..+. .-.+|++-++.|
T Consensus 37 ~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~-------Te~~V~eiTrdI 109 (793)
T KOG2180|consen 37 NIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAES-------TEAMVQEITRDI 109 (793)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 689999999999999999888776643322222 67777888888999888888876433 334577788999
Q ss_pred HhhhhhHHHHHHHHHhhh
Q 002225 495 LQRSLTEENLVKRIGNLQ 512 (951)
Q Consensus 495 s~~s~~Ee~L~kqI~kLk 512 (951)
.+-..+..||-.-|..|+
T Consensus 110 KqLD~AKkNLTtSiT~L~ 127 (793)
T KOG2180|consen 110 KQLDFAKKNLTTSITTLH 127 (793)
T ss_pred HhhhHHHhhHHHHHHHHH
Confidence 999999999877777665
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.21 E-value=1.1e+03 Score=31.25 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=10.4
Q ss_pred hhccchhhhcCcchHHHHHH
Q 002225 904 LDHYSSVLQHYPGVSFFFFY 923 (951)
Q Consensus 904 LDHYSPVLQHYpGV~d~l~~ 923 (951)
+.+...-++.+++-.+.+..
T Consensus 476 ~~~~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 476 LQRLEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444556666665555443
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.03 E-value=7.3e+02 Score=29.19 Aligned_cols=18 Identities=6% Similarity=0.329 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002225 664 YEVIFREALKEAEVKLNE 681 (951)
Q Consensus 664 ~~Vilke~vkEae~~L~~ 681 (951)
+....++.+++++.++..
T Consensus 168 ~~~~~k~~~~e~~~~i~~ 185 (562)
T PHA02562 168 MDKLNKDKIRELNQQIQT 185 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344466677777766653
No 47
>PHA03332 membrane glycoprotein; Provisional
Probab=37.20 E-value=3.3e+02 Score=36.05 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHH
Q 002225 807 KQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKR 850 (951)
Q Consensus 807 kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~ 850 (951)
+.+..+...+.++....+.+-.++.++|...+.|...|.+|.|.
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~ 948 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNL 948 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHH
Confidence 44445555677777777778888888788777777777666543
No 48
>smart00035 CLa CLUSTERIN alpha chain.
Probab=35.12 E-value=1.2e+02 Score=33.06 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhH
Q 002225 805 TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLS 864 (951)
Q Consensus 805 ~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~ 864 (951)
++.+|+-++..-..|-+-|.++=....+++.-+..=|+.|..|++++.+.||.-......
T Consensus 96 Lr~El~eAL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln~QFgWVS~LAN~t~~~~~~ 155 (216)
T smart00035 96 LRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLNEQFGWVSQLANLTQGEDQY 155 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHhcCCCCCCc
Confidence 455666677777888899999988888899999999999999999999999977664433
No 49
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.48 E-value=2.3e+02 Score=29.11 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=67.9
Q ss_pred cCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh
Q 002225 453 CNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYKCL 532 (951)
Q Consensus 453 ~~lkdRi~sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE~VYkc~ 532 (951)
...+.|.+.+..+...++.-|+++.+.++.|..+.-|. ++|.++|..|+.+++.+.-
T Consensus 16 ~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~-----------eeLk~~i~~lq~~~~~~~~------------ 72 (155)
T PF06810_consen 16 EAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDN-----------EELKKQIEELQAKNKTAKE------------ 72 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH-----------HHHHHHHHHHHHHHHHHHH------------
Confidence 34677888888888888888888888888887654444 6788888888888764321
Q ss_pred hhhhhhhhhhhcccchhHHHHHHHHHHHHHhhhhhccCchhhHHHHHhhcccccc-ccchhhhh
Q 002225 533 LGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLAEENLVKRIGNLQGA-LDDANIEA 595 (951)
Q Consensus 533 lre~v~~~~~~~e~~~le~~i~~EIy~iil~EAv~d~~~~~~~~l~k~~g~~~~a-leD~~iE~ 595 (951)
+.+..+-+-.+..-+..|+..+++...-++ +........ +.|..+.+
T Consensus 73 ---------------~~e~~l~~~~~~~ai~~al~~akakn~~av-~allD~d~l~l~~dg~~G 120 (155)
T PF06810_consen 73 ---------------EYEAKLAQMKKDSAIKSALKGAKAKNPKAV-KALLDLDKLKLDDDGLKG 120 (155)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHhcCHHHeeeCCCcccc
Confidence 223345555566677788888888765554 333333333 44444443
No 50
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.18 E-value=22 Score=41.62 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=46.4
Q ss_pred cccccccccc-----ccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhhhhccccc
Q 002225 161 DRIKGCSSLR-----RIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNTVYLSKAS 225 (951)
Q Consensus 161 ~~~~~~~~~~-----~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m~~l~~~s 225 (951)
...||+++.+ +++ .-.++|++|| |+..+-+|..-|+.|+.-=+=|+.++-.|++|+.|+|..
T Consensus 176 ~~~r~s~~~~e~~~~~~~-t~r~vGI~gi--Er~~e~q~~~td~~i~~AFqDLskLMs~Akemv~Lsk~~ 242 (432)
T KOG2760|consen 176 VDMRKSSPSHEYEVPFIG-TLRMVGISGI--ERSLEEQLKKTDKTINNAFQDLSKLMSLAKEMVSLSKSI 242 (432)
T ss_pred cccccCcccccccccccc-eeeeechhHH--HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555533 222 3358999999 445555899999999988889999999999998888764
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.06 E-value=1.4e+03 Score=30.66 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHH
Q 002225 834 IERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLE 898 (951)
Q Consensus 834 le~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLe 898 (951)
++.+..+++.+..++.+.--+..........-...++.+-.+..++++....||=+.+.--.|.+
T Consensus 415 ~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q 479 (1174)
T KOG0933|consen 415 IKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQ 479 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 45677778888888888777766666666666667777777777777777777766664444433
No 52
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=31.78 E-value=1.3e+03 Score=30.33 Aligned_cols=63 Identities=25% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH---HhhHhhhhHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 002225 668 FREALKEAEVKLN---ELNQKYFMETELRRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLLE 730 (951)
Q Consensus 668 lke~vkEae~~L~---~~~~k~~lEeEil~L~~~e~eKlk~~i~~l~aLvkEKE~Li~~a~~~l~e 730 (951)
++..+.+.+.+++ ....+.+.++|-++-+-+.-.......+....|++|.++-.+.......+
T Consensus 363 ~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~k 428 (980)
T KOG0980|consen 363 YENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEK 428 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445555555554 34444666666555444433334444444555577766666666554333
No 53
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.26 E-value=5.3e+02 Score=29.62 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=40.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHH
Q 002225 709 LLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLK 788 (951)
Q Consensus 709 ~l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~ 788 (951)
-|.+-+||-++-+++-..+ ..+|-+| |.-. |+.||-|. +.|+++-|- ++.-+-||..|+
T Consensus 72 HLkakLkes~~~l~dRetE------I~eLksQ-L~RM------rEDWIEEE-------CHRVEAQLA-LKEARkEIkQLk 130 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETE------IDELKSQ-LARM------REDWIEEE-------CHRVEAQLA-LKEARKEIKQLK 130 (305)
T ss_pred HHHHHHHHHHHHHHhhHHH------HHHHHHH-HHHH------HHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHH
Confidence 3444455656655554443 2233333 5433 34455544 466666332 334457777788
Q ss_pred HHHHHHHHHhhhhH
Q 002225 789 QKLELAMKELRDTN 802 (951)
Q Consensus 789 ~~L~~~s~~LkE~~ 802 (951)
+-++.+..+|-+.+
T Consensus 131 QvieTmrssL~ekD 144 (305)
T PF15290_consen 131 QVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHhhhchhh
Confidence 88888888877654
No 54
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.24 E-value=7.4e+02 Score=31.19 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=41.8
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHH---HHHHHHHHhhcc
Q 002225 842 DSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSG---LLEKIYIALDHY 907 (951)
Q Consensus 842 e~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLs---LLeKIYiALDHY 907 (951)
+.-+-.-+.|+++-..++.+ ++.++.||..+.-=..-.-|-+||.+.|.+ +-+--|.+|||-
T Consensus 102 s~~k~~t~dli~~t~~l~~e----~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL~rv 166 (655)
T KOG3758|consen 102 STSKATTQDLIQKTETLKEE----AAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDEDFFKVLDRV 166 (655)
T ss_pred hhccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHHHHHHHHHH
Confidence 33333344455555555444 346788888888888888888888888887 666777777764
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.26 E-value=1.5e+03 Score=30.42 Aligned_cols=472 Identities=24% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccccccchhhhhhcccCCcccccccccccccccccccccchHHHHHHH
Q 002225 74 VNAIEQEAAEKIAEKELELVRLRESLHLYHVGAEESEPFQSLVMKHESGSVKHGSYSSLSDYDKIGESVGGLKNVAKEQL 153 (951)
Q Consensus 74 v~aveqeaaekia~K~~ei~~l~e~l~~~~~g~~~~~~~~s~~~~~e~~~~~~~~~~~~~e~d~~~e~l~~lk~~~~~ql 153 (951)
|..--|+|.|+||.+.+|.++|...++.-.-|
T Consensus 126 ~id~~qe~se~i~e~~le~vGl~~~~~~s~s~------------------------------------------------ 157 (1195)
T KOG4643|consen 126 VIDDLQEASEKIAEKLLELVGLEKKYRESRSG------------------------------------------------ 157 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeeccccC------------------------------------------------
Q ss_pred HhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhhhhccccchhhhhHHH
Q 002225 154 KNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNTVYLSKASLCQWQQEK 233 (951)
Q Consensus 154 ~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m~~l~~~s~~~~q~E~ 233 (951)
|+ ... ++.+..-+.
T Consensus 158 ---------------------~~------------~~~---------------------------------sp~~~~~~~ 171 (1195)
T KOG4643|consen 158 ---------------------KE------------LYK---------------------------------SPYDIVVKK 171 (1195)
T ss_pred ---------------------CC------------CCC---------------------------------Ccchhhcch
Q ss_pred HHHhhHHHHHHHHHHhhhHHHHHHHHhhhhhhhccchhhhhHhHHHHHHHHHHHHHHhhhhcccCccCccCCCCCcCCCc
Q 002225 234 EFQGEIEDMVIMNCFRSLKEEFEERLCDQSAQFYDNESLNWLGKIKEISSLREELNAISKSLSVSEIGHLTSHGSIEMGE 313 (951)
Q Consensus 234 e~q~Ei~~ivI~~~ir~LqeEfE~kL~eQ~~~~~~~~s~nw~e~v~eissLR~EL~aI~ksL~~sE~g~~iShgs~E~~~ 313 (951)
..-.+++=.+...=||.|+.|+|.|- ++.-.+-+.+- ..=.||..||||-.....-
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~-enll~lr~eLd----dleae~~klrqe~~e~l~e------------------- 227 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKF-ENLLRLRNELD----DLEAEISKLRQEIEEFLDE------------------- 227 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCccceeccccccch---hcCCCCHH--HHHHhHHHHHHHHHHhhHHHH
Q 002225 314 EWDTNKWTDHLHRKTSSNHVGVSTSPSEGNGKHDESIIVMSENLDS---NLKHMSKE--ELVNHFKAEMTKMKRIHELKV 388 (951)
Q Consensus 314 ~~~~~k~~~~f~~K~s~d~~~~~~~~~e~n~~~~esi~~~pen~ds---~LkhM~ke--eli~yfk~em~KMkR~HEs~l 388 (951)
.++++++..+..--+-.... .+..-.--+..++|.-. .||-=++- |-..-++..+-+++.+-|-
T Consensus 228 ----a~ra~~yrdeldalre~aer-----~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-- 296 (1195)
T KOG4643|consen 228 ----AHRADRYRDELDALREQAER-----PDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-- 296 (1195)
T ss_pred ----HHhhhhhhhHHHHHHHhhhc-----CCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--
Q ss_pred HHHhHHHHHHHHHHhhhcCCCCCcccccccHHHhhhHHHHHHh----------------HHHHHhhcCCCcccccchhcc
Q 002225 389 TEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSK----------------LDDILVENEKLPAFSENAEGL 452 (951)
Q Consensus 389 qeKTEELF~lKRE~lkerGSsl~lrkdkEfe~lRKKIpeVIsK----------------LD~Il~~N~kl~~f~~~~~~~ 452 (951)
..---|+..+|..+---+ + +.+..|+|+.+...- |++|-++|+.+|.-+-..+..
T Consensus 297 ~tleseiiqlkqkl~dm~-~--------erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~e 367 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMR-S--------ERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENE 367 (1195)
T ss_pred CChHHHHHHHHHHHHHHH-H--------hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHH
Q ss_pred cCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhh
Q 002225 453 CNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYKCL 532 (951)
Q Consensus 453 ~~lkdRi~sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE~VYkc~ 532 (951)
.-=.+|.--++.|||.+=++|... ++.+=+.+..++..|+.+--.+..+.-|.|+=|..+
T Consensus 368 qLts~ralkllLEnrrlt~tleel--------------------qsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql 427 (1195)
T KOG4643|consen 368 QLTSDRALKLLLENRRLTGTLEEL--------------------QSSSYEELISKHLELEKEHKNLSKKHEILEERINQL 427 (1195)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHH--------------------hhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhcccchhHHHHHHHHHHHHHhhhhhccCchhhHHHHHhhccccccccchhhhhhhhhhhHHHHHHHHHhh
Q 002225 533 LGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLAEENLVKRIGNLQGALDDANIEASISEGVYKCLLREAVDS 612 (951)
Q Consensus 533 lre~v~~~~~~~e~~~le~~i~~EIy~iil~EAv~d~~~~~~~~l~k~~g~~~~aleD~~iE~~i~e~v~~vllrE~vkE 612 (951)
+. -+.+.-+.
T Consensus 428 ~q----------------------------------------------------------------------q~~eled~ 437 (1195)
T KOG4643|consen 428 LQ----------------------------------------------------------------------QLAELEDL 437 (1195)
T ss_pred HH----------------------------------------------------------------------HHHHHHHH
Q ss_pred hhhhhhcchhHHHHHHHHHHHhhhhhccccCCCCCcccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHH
Q 002225 613 IKSVSEKSDLEYELMQEVYGIIFSDAAHNATPGSTCAFEDCDMESVIMQDLYEVIFREALKEAEVKLNELNQKYFMETEL 692 (951)
Q Consensus 613 ~k~~~e~~~le~~~~~eiy~~i~~~~a~n~~~~s~~~f~~~~mEs~i~Ed~~~Vilke~vkEae~~L~~~~~k~~lEeEi 692 (951)
+|+.. .=..+..-+.+-
T Consensus 438 ~K~L~---------------------------------------------------------------~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 438 EKKLQ---------------------------------------------------------------FELEKLLEETST 454 (1195)
T ss_pred HHHHH---------------------------------------------------------------HHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHH
Q 002225 693 RRLEVAEKEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTD 772 (951)
Q Consensus 693 l~L~~~e~eKlk~~i~~l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~ 772 (951)
.........++.. ++.+++..+.. +.++..-|+.++..=-..|-....+.+.+-....+
T Consensus 455 ~~~s~~rq~~e~e----------~~~q~ls~~~Q-----------~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~e 513 (1195)
T KOG4643|consen 455 VTRSLSRQSLENE----------ELDQLLSLQDQ-----------LEAETEELLNQIKNLNKSLNNRDLELSRLHALKNE 513 (1195)
T ss_pred HHHhHHHHHHHhH----------HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhH
Q 002225 773 ALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSK 849 (951)
Q Consensus 773 aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq---~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~ 849 (951)
-.+|+..+....-.+...++..+..+--.+++ +-+|+.++-.- +.--+-||..+..+ +.-..-+..+.+-++
T Consensus 514 lkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t----~qn~~~LEq~~n~l-E~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 514 LKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT----SQNGALLEQNNNDL-ELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----hHHHHHHHHhhhHH-HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhh----hHHHH-HHHHhhhHHHhhHHH
Q 002225 850 RLILKANVITRTG----LSYKQ-KLERRCSDLQKAEAE 882 (951)
Q Consensus 850 ~Lv~qa~~Lkkk~----l~YKq-~le~RcsnLqKAEaE 882 (951)
.+-.+--.|..++ +-|.- .+-++.+-|+.++.+
T Consensus 589 alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~k 626 (1195)
T KOG4643|consen 589 ALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESK 626 (1195)
T ss_pred HHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHh
No 56
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.30 E-value=4.7e+02 Score=31.97 Aligned_cols=126 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHhhhcCCCCCcccccccHHHhhhHHHHHHhHHHHHhhcCCCcccccchhcccCch
Q 002225 377 MTKMKRIHELKVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFK 456 (951)
Q Consensus 377 m~KMkR~HEs~lqeKTEELF~lKRE~lkerGSsl~lrkdkEfe~lRKKIpeVIsKLD~Il~~N~kl~~f~~~~~~~~~lk 456 (951)
|.+.||.|-..=++.-. .-+|-|+++.||- |+..|.| ++=.|||.|+..=..+ --|+
T Consensus 378 I~~~k~r~~~Ls~RiLR--v~ikqeilr~~G~--~L~~~EE---------~Lr~Kldtll~~ln~P----------nq~k 434 (508)
T KOG3091|consen 378 IEEAKNRHVELSHRILR--VMIKQEILRKRGY--ALTPDEE---------ELRAKLDTLLAQLNAP----------NQLK 434 (508)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhccCC--cCCccHH---------HHHHHHHHHHHHhcCh----------HHHH
Q ss_pred hhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Q 002225 457 DRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYKC 531 (951)
Q Consensus 457 dRi~sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE~VYkc 531 (951)
.|++.|+....-.+ .-.+......-=-.-..|-.+++.++. +-+.+-+.=++.|+||+. -.+.|++--|
T Consensus 435 ~Rl~~L~e~~r~q~-~~~~~~~~~~iD~~~~~e~~e~lt~~~---e~l~~Lv~Ilk~d~edi~--~~l~E~~~~~ 503 (508)
T KOG3091|consen 435 ARLDELYEILRMQN-SQLKLQESYWIDFDKLIEMKEHLTQEQ---EALTKLVNILKGDQEDIK--HQLIEDLEIC 503 (508)
T ss_pred HHHHHHHHHHHhhc-chhccccceeechhhhHHHHHHHHHHH---HHHHHHHHHHHhHHHHHH--HHHHhhHHHH
No 57
>PRK10869 recombination and repair protein; Provisional
Probab=27.14 E-value=1.2e+03 Score=28.40 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=4.4
Q ss_pred HHHHhhhhHHH
Q 002225 794 AMKELRDTNEE 804 (951)
Q Consensus 794 ~s~~LkE~~eq 804 (951)
-+..|.++++.
T Consensus 294 dp~~l~~ie~R 304 (553)
T PRK10869 294 DPNRLAELEQR 304 (553)
T ss_pred CHHHHHHHHHH
Confidence 33334444433
No 58
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.40 E-value=4.8e+02 Score=34.01 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=58.3
Q ss_pred hcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002225 758 KSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE--TRKQVQLLVIFIQGLSKTVADFECRAVA 832 (951)
Q Consensus 758 e~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq--~~kQLesilvsi~~lsk~f~dfE~~v~~ 832 (951)
..-..|..+.+.+-++.++++..|.-|..-+..|...+.+|+++-.+ +-|-+=.+++-|.++-+.+..||.-++.
T Consensus 79 ~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~k 155 (982)
T KOG3691|consen 79 TGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAK 155 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344555677777888888888888888888888888889988887 6666777888889999988888887654
No 59
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.29 E-value=1.5e+03 Score=28.77 Aligned_cols=220 Identities=19% Similarity=0.213 Sum_probs=110.6
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHhhhcCCCCCccc--cc-ccHHHhhhHHHHHHhHHHHHhhcCCCcccccchh--
Q 002225 376 EMTKMKRIHELKVTEMTEDLFALKREYLKERGSSLPIKK--DK-EFDILRKKIPEVLSKLDDILVENEKLPAFSENAE-- 450 (951)
Q Consensus 376 em~KMkR~HEs~lqeKTEELF~lKRE~lkerGSsl~lrk--dk-Efe~lRKKIpeVIsKLD~Il~~N~kl~~f~~~~~-- 450 (951)
||..|-.+|=-.|+.--|+|.++=-|+=.+|=+| |+|. |. +|+.+=+++| ++. +.-..--++|+|+.-++
T Consensus 123 E~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~S-p~~~~lp~~~Le~Ive~~~---~~~-~~~~~~~~lPtF~~~Desl 197 (683)
T PF08580_consen 123 EWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSS-PVRHGLPIFELETIVEEMP---SST-NSSNKRFSLPTFSPQDESL 197 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CcccCCCcccHHHHHHhcc---ccC-CCCcCCcCCCCCCcHHHHH
Confidence 5666777777778888888888888875556665 7655 32 5555555544 110 11111234699977553
Q ss_pred --cccCchhhhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 002225 451 --GLCNFKDRLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGV 528 (951)
Q Consensus 451 --~~~~lkdRi~sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE~V 528 (951)
.++.|..|+.-|.- -| |.|--+..+.+......-..+....+. .=+.|.++-++|+.|.+.++-| +-|+=
T Consensus 198 ~~~ll~L~arm~PLra---SL-dfLP~Ri~~F~~ra~~~fp~a~e~L~~--r~~~L~~k~~~L~~e~~~LK~E--LiedR 269 (683)
T PF08580_consen 198 YSSLLALFARMQPLRA---SL-DFLPMRIEEFQSRAESIFPSACEELED--RYERLEKKWKKLEKEAESLKKE--LIEDR 269 (683)
T ss_pred HHHHHHHHhccchHHH---HH-HHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--hhhhh
Confidence 45555555544321 12 444555555543332222222111111 1134566666777777766544 33444
Q ss_pred HHhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHhhhhhc-cCchhhHHHHHhhccccc-------cccchhhhhhhhhh
Q 002225 529 YKCLLGEAADFIKSVSKKSDLEYELMQEVYEIIFSDAAHN-ATPLAEENLVKRIGNLQG-------ALDDANIEASISEG 600 (951)
Q Consensus 529 Ykc~lre~v~~~~~~~e~~~le~~i~~EIy~iil~EAv~d-~~~~~~~~l~k~~g~~~~-------aleD~~iE~~i~e~ 600 (951)
+-.+|+-+..|+-...+. +|..+ --+.+|+.. +.-.....|.|.+|++.- |+.-+-.++||-.|
T Consensus 270 W~~vFr~l~~q~~~m~es--ver~~------~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~g 341 (683)
T PF08580_consen 270 WNIVFRNLGRQAQKMCES--VERSL------SKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKG 341 (683)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHH------HHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhh
Confidence 555555555554444442 11111 113444321 222334456666655432 24445566677777
Q ss_pred hHHHHHHHHHhhhhhh
Q 002225 601 VYKCLLREAVDSIKSV 616 (951)
Q Consensus 601 v~~vllrE~vkE~k~~ 616 (951)
|-..+=.++...|..+
T Consensus 342 v~~r~n~~L~~rW~~L 357 (683)
T PF08580_consen 342 VADRLNADLAQRWLEL 357 (683)
T ss_pred HHHHhhHHHHHHHHHH
Confidence 6655544555555544
No 60
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.19 E-value=2.5e+02 Score=32.02 Aligned_cols=60 Identities=22% Similarity=0.436 Sum_probs=42.3
Q ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHH--------HhHHHHHH
Q 002225 767 KGNLTDALEQIEQYKLEVHDLKQKLELAMKE--------------LRDTNEETRKQVQLLVIFI--------QGLSKTVA 824 (951)
Q Consensus 767 ~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~--------------LkE~~eq~~kQLesilvsi--------~~lsk~f~ 824 (951)
+-+|.+.-..++....||.+|+..|.-+.++ |||+.++ =|||.-+|..| .++.|-|+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkE-IkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKE-IKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 5556666667777779999999999988887 7787777 23444444333 56788888
Q ss_pred HHH
Q 002225 825 DFE 827 (951)
Q Consensus 825 dfE 827 (951)
|+-
T Consensus 153 DIN 155 (305)
T PF15290_consen 153 DIN 155 (305)
T ss_pred hhh
Confidence 874
No 61
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.74 E-value=1.6e+03 Score=29.02 Aligned_cols=92 Identities=28% Similarity=0.320 Sum_probs=50.5
Q ss_pred hcCCCCHHHHHHhHHHHHHHHHHhhHH-----------------H--HHHHhHHHHHHHHHHhhhcCCCCCcccccccHH
Q 002225 360 NLKHMSKEELVNHFKAEMTKMKRIHEL-----------------K--VTEMTEDLFALKREYLKERGSSLPIKKDKEFDI 420 (951)
Q Consensus 360 ~LkhM~keeli~yfk~em~KMkR~HEs-----------------~--lqeKTEELF~lKRE~lkerGSsl~lrkdkEfe~ 420 (951)
.|..|+.++++.....=..+|=+-.|. + .-+-.+|+-.||.|+||-+-|+ + .+
T Consensus 384 ~l~~~~~~~l~~~R~~kfr~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~Le~elekLk~eilKAk~s~-~-------~~ 455 (762)
T PLN03229 384 ELGKMDTEELLKHRMLKFRKIGGFQEGVPVDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESS-S-------KP 455 (762)
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCcccCCCCChhhhcccchhccCCCCCccHHHHHHHHHHHHHhccccc-C-------CC
Confidence 377788888877654433333221222 1 3456789999999999887564 1 11
Q ss_pred HhhhHHHHHHhHHHHHhhcCCCcccccchhcccCchhhhhHHHhh
Q 002225 421 LRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKDRLESLLLE 465 (951)
Q Consensus 421 lRKKIpeVIsKLD~Il~~N~kl~~f~~~~~~~~~lkdRi~sL~~E 465 (951)
+.-=+-+-|.||-+=+..+ ..++-...+|++|++.|..|
T Consensus 456 ~~~~L~e~IeKLk~E~d~e------~S~A~~~~gLk~kL~~Lr~E 494 (762)
T PLN03229 456 SELALNEMIEKLKKEIDLE------YTEAVIAMGLQERLENLREE 494 (762)
T ss_pred CChHHHHHHHHHHHHHHHH------HHHhhhhhhHHHHHHHHHHH
Confidence 2212223444443333332 11222345689999988844
No 62
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.45 E-value=9.3e+02 Score=26.14 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhH-HHHHHHhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 002225 666 VIFREALKEAEVKLNELNQKYFME-TELRRLEVAEKEKLKQETR-LLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELS 743 (951)
Q Consensus 666 Vilke~vkEae~~L~~~~~k~~lE-eEil~L~~~e~eKlk~~i~-~l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~ 743 (951)
.-+..+++|++..|.++--..|.. ...--.+....++|-..+. .+.....+-+.+...+...|.++...+.=+..-+.
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~ 202 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLN 202 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888886552222222 1111111222223222222 22333345566666777766655555444444343
Q ss_pred hhhhhh
Q 002225 744 HLRDET 749 (951)
Q Consensus 744 ~Lr~~~ 749 (951)
...+++
T Consensus 203 eA~~~~ 208 (264)
T PF06008_consen 203 EAQNKT 208 (264)
T ss_pred HHHHHH
Confidence 333333
No 63
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.44 E-value=7.8e+02 Score=28.20 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=33.0
Q ss_pred HHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhccccccc
Q 002225 726 ATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFND 765 (951)
Q Consensus 726 ~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~ 765 (951)
.++..++..++.+..++..||+.+.+.+.||.+.+=.+..
T Consensus 140 ~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 140 RELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 3456678888999999999999999999999887766653
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=24.26 E-value=1.5e+03 Score=28.42 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002225 718 ENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKE 797 (951)
Q Consensus 718 E~Li~~a~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~ 797 (951)
+++...+......-...++.+...+..+.++...-.. ....+.+...++..++.++..|.+.+......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~-----------l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~ 229 (880)
T PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKE-----------KEKELEEVLREINEISSELPELREELEKLEKE 229 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhh---HHHHH
Q 002225 798 LRDTNEE------TRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGL---SYKQK 868 (951)
Q Consensus 798 LkE~~eq------~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l---~YKq~ 868 (951)
+...++. .+.++..+-.-+..+.......+..+.+. +..-.++..+..++..+-.....+.+-.- -|.+.
T Consensus 230 l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l-~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~ 308 (880)
T PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL-KKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhccchhhhcCcchHHHHHHh
Q 002225 869 LERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGVSFFFFYC 924 (951)
Q Consensus 869 le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHYSPVLQHYpGV~d~l~~~ 924 (951)
+..=...++..+.++.-|-.+...+-..++++--....+....+.+|.+....-..
T Consensus 309 ~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~~~~~~~~~~l~~~~~~l 364 (880)
T PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 65
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.42 E-value=7.3e+02 Score=27.32 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=43.4
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHhhh-hhHHHHHHHHhhhHHHhhHHHHhhccchHHHHH---HHHHHHHHHhhccchh
Q 002225 837 CNFRLDSLSSQSKRLILKANVITRT-GLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLS---GLLEKIYIALDHYSSV 910 (951)
Q Consensus 837 n~~Rle~L~~q~~~Lv~qa~~Lkkk-~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LL---sLLeKIYiALDHYSPV 910 (951)
|.-.+++|.+++-.|..+++.+--. |..|- .-+ =+..--+||.|-||+|-|.+= +-|.--|.+=+.=+|+
T Consensus 124 nId~IedlQDem~Dlmd~a~EiQE~Lgr~y~-~pe---ide~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~~~ 197 (218)
T KOG1655|consen 124 NIDKIEDLQDEMEDLMDQADEIQEVLGRNYN-TPD---IDEADLDAELDALGQELDMLEEDENYLMPSYLAPANEPPA 197 (218)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCC---cCHHHHHHHHHHHHhHhhcccccccccchhhhCCCCCCCC
Confidence 6778999999999999999877422 11111 111 345556788999999887753 2233344444444443
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.72 E-value=1.1e+03 Score=26.52 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002225 662 DLYEVIFREALKEAEVKL 679 (951)
Q Consensus 662 d~~~Vilke~vkEae~~L 679 (951)
..|+.--|.+--+|+.++
T Consensus 129 ~~aRl~aK~~WYeWR~~l 146 (325)
T PF08317_consen 129 TYARLEAKKMWYEWRMQL 146 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777888888898887
No 67
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=22.60 E-value=4.8e+02 Score=28.24 Aligned_cols=95 Identities=16% Similarity=0.320 Sum_probs=53.9
Q ss_pred hhHHhhHHHHHHHHHHHhhhhhhhhccccchhh--hhHHHHHHhhHHHHH---HHHHH----------------------
Q 002225 196 DVDKALDSLRTTLDTIFNCADNTVYLSKASLCQ--WQQEKEFQGEIEDMV---IMNCF---------------------- 248 (951)
Q Consensus 196 ~vd~~~d~Lk~~ld~vf~~~~~m~~l~~~s~~~--~q~E~e~q~Ei~~iv---I~~~i---------------------- 248 (951)
.+...++.|+.-++.+|.+-.+.+++.-.+++. -.|..||..+++.+| +|+.+
T Consensus 96 ~l~~l~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~e~e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~ 175 (229)
T PF11101_consen 96 RLKQLMDQLKQQVDRRFYQRGDGFVLHAQAFSQLDEFFDQEFEQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQR 175 (229)
T ss_pred HHHHHHHHHHHHHHHHheeCCCcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 345555666666666666666655565555554 456677888877665 23333
Q ss_pred -hhhHHHHHHHHhhhhhhhccchhhhhHhHHHHHHHHHHHHHHh
Q 002225 249 -RSLKEEFEERLCDQSAQFYDNESLNWLGKIKEISSLREELNAI 291 (951)
Q Consensus 249 -r~LqeEfE~kL~eQ~~~~~~~~s~nw~e~v~eissLR~EL~aI 291 (951)
-+|++.+|.++=.|... .......+=+.+..+..+|++|...
T Consensus 176 m~~l~~~ie~~~~~q~~~-le~~a~~lC~~l~~L~~~E~~L~~~ 218 (229)
T PF11101_consen 176 MEGLQQQIEQEMEAQAQE-LEQKAQALCDSLQQLDQQEQQLQQR 218 (229)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555544444332 2333444446677777777777543
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.29 E-value=1.9e+03 Score=28.92 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=59.0
Q ss_pred HhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhh----------hhHHHHHHHHhhhHHHhhHHHHhhc
Q 002225 817 QGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRT----------GLSYKQKLERRCSDLQKAEAEVDLL 886 (951)
Q Consensus 817 ~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk----------~l~YKq~le~RcsnLqKAEaEVDLL 886 (951)
.+........+...++..++.+-|+-++.+.+++.-..+..++-+ +..-|-..+++-+||+ .|.+=.
T Consensus 833 a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~---lki~s~ 909 (970)
T KOG0946|consen 833 ADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLS---LKIVSN 909 (970)
T ss_pred hhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccch---hcccch
Confidence 333444455566677788888889999998888888888888766 3344445555555553 456677
Q ss_pred cchHHHHHHHHHHHHHHhhcc
Q 002225 887 GDEVDTLSGLLEKIYIALDHY 907 (951)
Q Consensus 887 GDeVd~LLsLLeKIYiALDHY 907 (951)
-+|-+.++-+++++---...|
T Consensus 910 kqeqee~~v~~~~~~~~i~al 930 (970)
T KOG0946|consen 910 KQEQEELLVLLADQKEKIQAL 930 (970)
T ss_pred hhhHHHHHHHHhhHHHHHHHH
Confidence 777888888887765443333
No 69
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=22.24 E-value=2.4e+03 Score=30.22 Aligned_cols=55 Identities=18% Similarity=0.078 Sum_probs=28.9
Q ss_pred hhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHH
Q 002225 842 DSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGL 896 (951)
Q Consensus 842 e~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsL 896 (951)
..+..+.....+....+.+.-..-+.-+..+|.+++.-++.++-|-++|..|+-=
T Consensus 443 ~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~e 497 (1822)
T KOG4674|consen 443 AELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLE 497 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444455555666666666666666666655543
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=21.97 E-value=1.5e+03 Score=27.52 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=27.8
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 002225 485 LKVSDTAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITE 526 (951)
Q Consensus 485 sqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE 526 (951)
.+.-+|+...-...-.=+.|...|..++..++.++.....-+
T Consensus 158 ~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAe 199 (522)
T PF05701_consen 158 KQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAE 199 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555556788888888888888776554444
No 71
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.64 E-value=2e+03 Score=29.12 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=19.8
Q ss_pred HhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhh
Q 002225 836 RCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKA 879 (951)
Q Consensus 836 ~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKA 879 (951)
.++.++..+..+.-.+-+++.-.-+.-..-++++..+-..||++
T Consensus 315 ~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 315 EIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34444444444444444444444444444444444444444443
No 72
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.14 E-value=1.5e+03 Score=27.39 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Q 002225 766 LKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE----------TRKQVQLLVIFIQGLSKTVADFECRAVADIE 835 (951)
Q Consensus 766 ~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq----------~~kQLesilvsi~~lsk~f~dfE~~v~~kle 835 (951)
+..+++++.-++.-...++....+.+..-+..|.+++++ +..+++.++....++.+.+..++..-. .++
T Consensus 271 ~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~-~le 349 (563)
T TIGR00634 271 LAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE-SLE 349 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH-HHH
Confidence 333444444444444444444444444444445554444 111233334444444444444333322 234
Q ss_pred HhhhhhhhhHHhhHHHHHHHHHH
Q 002225 836 RCNFRLDSLSSQSKRLILKANVI 858 (951)
Q Consensus 836 ~n~~Rle~L~~q~~~Lv~qa~~L 858 (951)
....+++.+..++..+.++....
T Consensus 350 ~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 350 ALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444
No 73
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.00 E-value=6.2e+02 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhh
Q 002225 819 LSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITR 860 (951)
Q Consensus 819 lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkk 860 (951)
....|.++....+ .+..|-..|+.|++.|++|++.|-.
T Consensus 26 Wq~sy~~Lq~~~~----~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 26 WQSSYADLQHMFE----QTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554443 3445555777777777777776643
No 74
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=62 Score=36.47 Aligned_cols=27 Identities=37% Similarity=0.616 Sum_probs=23.6
Q ss_pred HHHHHHHhhccchhhhcCcchHHHHHH
Q 002225 897 LEKIYIALDHYSSVLQHYPGVSFFFFY 923 (951)
Q Consensus 897 LeKIYiALDHYSPVLQHYpGV~d~l~~ 923 (951)
.+--|-+|+|.|-||.||||..-+++.
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~fr 269 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFR 269 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 366899999999999999999888754
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.53 E-value=2.2e+03 Score=29.05 Aligned_cols=258 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcCCCCCcccccccHHHh---hhHHHHHHhHHHHHhhcCCC----cccccchhcccCchh
Q 002225 385 ELKVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILR---KKIPEVLSKLDDILVENEKL----PAFSENAEGLCNFKD 457 (951)
Q Consensus 385 Es~lqeKTEELF~lKRE~lkerGSsl~lrkdkEfe~lR---KKIpeVIsKLD~Il~~N~kl----~~f~~~~~~~~~lkd 457 (951)
|-.+.+.++|+-+++.|+-+-.+. +=.+++++...| .||-.=+.++|..+++.++. |....=.....+.+.
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~--~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKER--MDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Q ss_pred hhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHhhhhhh
Q 002225 458 RLESLLLENRQLRSLLTDKKNEVKRLSLKVSDTAEIMLQRSLTEENLVKRIGNLQGALD-DAHIEASITEGVYKCLLGEA 536 (951)
Q Consensus 458 Ri~sL~~EN~qLrdlLadk~kevk~lSsqvSdA~~k~s~~s~~Ee~L~kqI~kLk~d~E-D~~IE~~IrE~VYkc~lre~ 536 (951)
|+...--.....+.-......+++.+..|+-+- +-+.+.+.+.|.+-..... ++.+.-..-+ -|.|
T Consensus 304 rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av-------~~~~~~fekei~~~~q~rg~~lnl~d~~~~-ey~r----- 370 (1141)
T KOG0018|consen 304 RLEEIEKDIETAKKDYRALKETIERLEKELKAV-------EGAKEEFEKEIEERSQERGSELNLKDDQVE-EYER----- 370 (1141)
T ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhccccCCcchHHHH-HHHH-----
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHhhhhhccCchhhHHHHHhhccccccccchhhhhhhhhhhHHHHHHHHHhhhhhh
Q 002225 537 ADFIKSVSKKSDLEYELMQEVYEIIFSDAAHNATPLAEENLVKRIGNLQGALDDANIEASISEGVYKCLLREAVDSIKSV 616 (951)
Q Consensus 537 v~~~~~~~e~~~le~~i~~EIy~iil~EAv~d~~~~~~~~l~k~~g~~~~aleD~~iE~~i~e~v~~vllrE~vkE~k~~ 616 (951)
T Consensus 371 -------------------------------------------------------------------------------- 370 (1141)
T KOG0018|consen 371 -------------------------------------------------------------------------------- 370 (1141)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred hhcchhHHHHHHHHHHHhhhhhccccCCCCCcccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHh
Q 002225 617 SEKSDLEYELMQEVYGIIFSDAAHNATPGSTCAFEDCDMESVIMQDLYEVIFREALKEAEVKLNELNQKYFMETELRRLE 696 (951)
Q Consensus 617 ~e~~~le~~~~~eiy~~i~~~~a~n~~~~s~~~f~~~~mEs~i~Ed~~~Vilke~vkEae~~L~~~~~k~~lEeEil~L~ 696 (951)
+.+|+.+..
T Consensus 371 -----------------------------------------------------------------------lk~ea~~~~ 379 (1141)
T KOG0018|consen 371 -----------------------------------------------------------------------LKEEACKEA 379 (1141)
T ss_pred -----------------------------------------------------------------------HHHHHhhhh
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHH
Q 002225 697 VAEKEKLKQETRLLSSLVEEKENLVSEAVATLLEEKDLSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQ 776 (951)
Q Consensus 697 ~~e~eKlk~~i~~l~aLvkEKE~Li~~a~~~l~ee~~~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeq 776 (951)
..+-+.++..+..-...+.--.....+......+.+..++-...+.+.|......-....++-....+.+-.....+-++
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~ 459 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEE 459 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhh
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002225 777 IEQYKLEVHDLKQKLELAMKELRDTNEETRKQ 808 (951)
Q Consensus 777 i~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQ 808 (951)
...+..++.+....|..++..-.+-....++|
T Consensus 460 ~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~ 491 (1141)
T KOG0018|consen 460 PYELNEELVEVLDQLLDASADRHEGSRRSRKQ 491 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccHHHHHHH
No 76
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=20.40 E-value=1.5e+03 Score=27.18 Aligned_cols=20 Identities=0% Similarity=0.277 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 002225 773 ALEQIEQYKLEVHDLKQKLE 792 (951)
Q Consensus 773 aLeqi~~~K~el~~L~~~L~ 792 (951)
+.|.+++-+..+..+++...
T Consensus 165 ~~qElq~k~t~~~afn~tik 184 (464)
T KOG4637|consen 165 TSQELQMKRTAIEAFNETIK 184 (464)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 34444444455555554433
Done!