Query 002225
Match_columns 951
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 71.1 13 0.00044 46.2 10.2 21 208-228 348-368 (1184)
2 1i84_S Smooth muscle myosin he 67.3 11 0.00037 46.8 8.5 13 74-86 152-164 (1184)
3 1deq_A Fibrinogen (alpha chain 54.3 34 0.0012 38.3 8.6 30 852-888 202-237 (390)
4 3vkg_A Dynein heavy chain, cyt 54.0 2.7E+02 0.0091 39.0 18.3 51 833-890 2036-2086(3245)
5 2v71_A Nuclear distribution pr 44.1 2.8E+02 0.0095 28.4 14.8 112 775-907 10-121 (189)
6 1c1g_A Tropomyosin; contractIl 43.2 2.2E+02 0.0076 27.0 30.0 9 897-905 267-275 (284)
7 3vkg_A Dynein heavy chain, cyt 38.8 1E+03 0.036 33.5 26.8 19 361-379 1453-1471(3245)
8 2efr_A General control protein 37.8 3.1E+02 0.011 27.1 13.6 46 814-859 98-153 (155)
9 3ghg_A Fibrinogen alpha chain; 35.1 2.9E+02 0.01 32.3 12.4 84 825-915 103-209 (562)
10 3na7_A HP0958; flagellar bioge 33.3 4.1E+02 0.014 27.2 15.7 144 756-899 13-164 (256)
11 1deq_A Fibrinogen (alpha chain 31.0 5.6E+02 0.019 28.9 13.4 7 880-886 173-179 (390)
12 2j1d_G DAAM1, disheveled-assoc 27.1 2.8E+02 0.0095 31.2 10.6 135 423-560 216-360 (483)
13 3oja_A Leucine-rich immune mol 25.6 5.1E+02 0.018 28.3 12.2 22 781-802 455-476 (487)
14 2kfd_A PRE-mRNA-processing pro 24.6 14 0.00048 32.5 -0.3 33 888-920 12-52 (69)
15 1deb_A APC protein, adenomatou 23.3 1.1E+02 0.0039 25.6 4.8 35 849-883 6-40 (54)
16 4eah_A Formin-like protein 3, 22.4 4.9E+02 0.017 28.7 11.3 158 381-560 181-345 (402)
17 2dfs_A Myosin-5A; myosin-V, in 21.6 9.5E+02 0.032 30.0 14.6 31 774-804 983-1013(1080)
18 2fxo_A Myosin heavy chain, car 20.4 5.3E+02 0.018 24.1 14.7 36 832-878 83-118 (129)
19 3hd7_B Syntaxin-1A; membrane p 20.3 5E+02 0.017 23.7 10.8 65 808-873 22-86 (109)
20 1pl5_A Regulatory protein SIR4 20.0 1.4E+02 0.0048 28.5 5.4 55 734-788 75-129 (142)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.06 E-value=13 Score=46.23 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=14.4
Q ss_pred HHHHHhhhhhhhhccccchhh
Q 002225 208 LDTIFNCADNTVYLSKASLCQ 228 (951)
Q Consensus 208 ld~vf~~~~~m~~l~~~s~~~ 228 (951)
.+.+|+-.--.|+|-+..+..
T Consensus 348 ~~~i~~ilaaiLhlGni~f~~ 368 (1184)
T 1i84_S 348 QTSILRVVSSVLQLGNIVFKK 368 (1184)
T ss_dssp HHHHHHHHHHHHHTTTCCCBC
T ss_pred HHHHHHHHHHHHhhcCceeec
Confidence 445677777778887776543
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=67.32 E-value=11 Score=46.84 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 002225 74 VNAIEQEAAEKIA 86 (951)
Q Consensus 74 v~aveqeaaekia 86 (951)
|=||-+.|=+.+.
T Consensus 152 i~aia~~ay~~m~ 164 (1184)
T 1i84_S 152 IYAIADTAYRSML 164 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHH
Confidence 5577777766553
No 3
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.31 E-value=34 Score=38.32 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhh------HHHHHHHHhhhHHHhhHHHHhhccc
Q 002225 852 ILKANVITRTGL------SYKQKLERRCSDLQKAEAEVDLLGD 888 (951)
Q Consensus 852 v~qa~~Lkkk~l------~YKq~le~RcsnLqKAEaEVDLLGD 888 (951)
++....||..-+ .|| +-||||++|-=.|.|
T Consensus 202 ~q~lp~LK~~p~kd~vP~~fK-------sq~q~a~~Ew~al~~ 237 (390)
T 1deq_A 202 IQYLPILKMSTITGPVPREFK-------SQLQEAPLEWKALLE 237 (390)
T ss_pred cccccccccccccccCChhhc-------ccccccchHHHHHHh
Confidence 344555555544 666 889999997654443
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.98 E-value=2.7e+02 Score=39.01 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=28.6
Q ss_pred hHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchH
Q 002225 833 DIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEV 890 (951)
Q Consensus 833 kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeV 890 (951)
++...+.+++.|+.++...+.+...|+..--. =-.-|..|+.=++=||+|-
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~-------~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESSK-------VKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhcc
Confidence 44555666666777776666665555543322 2233556666566666654
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.10 E-value=2.8e+02 Score=28.37 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=72.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHH
Q 002225 775 EQIEQYKLEVHDLKQKLELAMKELRDTNEETRKQVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILK 854 (951)
Q Consensus 775 eqi~~~K~el~~L~~~L~~~s~~LkE~~eq~~kQLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~q 854 (951)
+.+..||....+..+.+..+-..|.|+ ....-++|.-+...|+..+.|...|..++..|-..
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EF------------------qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEF------------------QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888887777666666653 33344566667777777888888888888888777
Q ss_pred HHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHHHHHHhhcc
Q 002225 855 ANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEKIYIALDHY 907 (951)
Q Consensus 855 a~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeKIYiALDHY 907 (951)
...+|.|----+.-+.+ ..-+.+.|+.-|-+..++|..-|.++=++-|.+
T Consensus 72 ~e~~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 72 VEALKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 77776653222222222 233445567777777777777777766665543
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=43.15 E-value=2.2e+02 Score=26.98 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q 002225 897 LEKIYIALD 905 (951)
Q Consensus 897 LeKIYiALD 905 (951)
+.++=..++
T Consensus 267 ~~~~~~~~~ 275 (284)
T 1c1g_A 267 YKAISEELD 275 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.81 E-value=1e+03 Score=33.51 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=10.7
Q ss_pred cCCCCHHHHHHhHHHHHHH
Q 002225 361 LKHMSKEELVNHFKAEMTK 379 (951)
Q Consensus 361 LkhM~keeli~yfk~em~K 379 (951)
+..++.++|..-|.+-...
T Consensus 1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 4445666666666554433
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=37.80 E-value=3.1e+02 Score=27.15 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHH----------hHHHhhhhhhhhHHhhHHHHHHHHHHh
Q 002225 814 IFIQGLSKTVADFECRAVA----------DIERCNFRLDSLSSQSKRLILKANVIT 859 (951)
Q Consensus 814 vsi~~lsk~f~dfE~~v~~----------kle~n~~Rle~L~~q~~~Lv~qa~~Lk 859 (951)
.++.+|.+.+.+.|..+.. .+..+-.-|..+..-+-||-..++.|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4566666666666655332 222233334444444555555555544
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.14 E-value=2.9e+02 Score=32.35 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhh------------------c
Q 002225 825 DFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDL------------------L 886 (951)
Q Consensus 825 dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDL------------------L 886 (951)
+.+.++.+-.+..+.|+..|+..++.-+++..+|+ ..++.-++.+||-|--||+ |
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ-------snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~ 175 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ-------KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDL 175 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecch
Confidence 44444444333445556666666666555555553 4566666667766655443 3
Q ss_pred cchHHHHHHHHHHHHHHhhc-----cchhhhcCc
Q 002225 887 GDEVDTLSGLLEKIYIALDH-----YSSVLQHYP 915 (951)
Q Consensus 887 GDeVd~LLsLLeKIYiALDH-----YSPVLQHYp 915 (951)
+|=++..=-|.+=|-+-|-- |=|+|+=-|
T Consensus 176 ~sY~~~QKQLeQv~a~dL~p~~~~q~Lp~lKmrP 209 (562)
T 3ghg_A 176 KDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKMKP 209 (562)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCCCC---------
T ss_pred HHHHHHHHHHHHHhhcccCCccccccchhccccc
Confidence 44444444444444444433 556665443
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.31 E-value=4.1e+02 Score=27.22 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhhcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHH----
Q 002225 756 ISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLKQKLELAMKELRDTNEE---TRKQVQLLVIFIQGLSKTVADFEC---- 828 (951)
Q Consensus 756 Ise~~~e~~~~~~~l~~aLeqi~~~K~el~~L~~~L~~~s~~LkE~~eq---~~kQLesilvsi~~lsk~f~dfE~---- 828 (951)
+.+-....+.+..........+...+.++..++..+..+...+.+++.+ .+..+..+-.-|.+..+-....-.
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~ 92 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSEREL 92 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Q ss_pred -HHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHHhhccchHHHHHHHHHH
Q 002225 829 -RAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQKAEAEVDLLGDEVDTLSGLLEK 899 (951)
Q Consensus 829 -~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEVDLLGDeVd~LLsLLeK 899 (951)
.+...++....|...+.+....+..++-.++..---.+..+..+-.+|..+.+++|---.+++.-+.-|.+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 11
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.98 E-value=5.6e+02 Score=28.91 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=3.8
Q ss_pred HHHHhhc
Q 002225 880 EAEVDLL 886 (951)
Q Consensus 880 EaEVDLL 886 (951)
+.+||+-
T Consensus 173 ~~~vD~e 179 (390)
T 1deq_A 173 EHKVDLE 179 (390)
T ss_pred hhhccHH
Confidence 4556653
No 12
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=27.14 E-value=2.8e+02 Score=31.25 Aligned_cols=135 Identities=12% Similarity=0.144 Sum_probs=61.1
Q ss_pred hhHHHHHHhHHHHHhhcCCCcccccchhcccCchh------hhhHHHhhhhhhhhhhhhhHHHhhhhhhhhh--hHHHHH
Q 002225 423 KKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKD------RLESLLLENRQLRSLLTDKKNEVKRLSLKVS--DTAEIM 494 (951)
Q Consensus 423 KKIpeVIsKLD~Il~~N~kl~~f~~~~~~~~~lkd------Ri~sL~~EN~qLrdlLadk~kevk~lSsqvS--dA~~k~ 494 (951)
++|-++|..+.|++....+-.+..-.-+.++.|.| +--+|++ .+-..+..+--++-.+.+.++ +.+.++
T Consensus 216 ~~lL~~IL~~GN~mN~g~rg~A~GFkL~sL~KL~d~Ks~~d~k~TLLh---ylv~~v~~~~p~l~~f~~eL~~v~~Askv 292 (483)
T 2j1d_G 216 KQLLEVVLAFGNYMNKGQRGNAYGFKISSLNKIADTKSSIDKNITLLH---YLITIVENKYPSVLNLNEELRDIPQAAKV 292 (483)
T ss_dssp HHHHHHHHHHHHHHSCSSSCCCSCCCGGGGGGGGGSBCSSCTTCBHHH---HHHHHHHHHCGGGGGHHHHTTTHHHHHTC
T ss_pred HHHHHHHHHHhhhhccCCCCCceeeehHHHHhhhhcccCCCCCccHHH---HHHHHHHHhCchhhchHHHHhhHHHHhcC
Confidence 57899999999999987332232222244444332 2333442 222233333334444444443 233444
Q ss_pred HhhhhhH--HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhcccchhHHHHHHHHHHH
Q 002225 495 LQRSLTE--ENLVKRIGNLQGALDDAHIEASITEGVYKCLLGEAADFIKSVSKKSDLEYELMQEVYEI 560 (951)
Q Consensus 495 s~~s~~E--e~L~kqI~kLk~d~ED~~IE~~IrE~VYkc~lre~v~~~~~~~e~~~le~~i~~EIy~i 560 (951)
+...+.. .+|.+.+.+++.+++-..-...--++-|...+.+++.............+.-+++.|.-
T Consensus 293 ~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~ 360 (483)
T 2j1d_G 293 NMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTK 360 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 23444444444444322110000122344445555555555555444445545555543
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.65 E-value=5.1e+02 Score=28.26 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 002225 781 KLEVHDLKQKLELAMKELRDTN 802 (951)
Q Consensus 781 K~el~~L~~~L~~~s~~LkE~~ 802 (951)
+-++.++...+..|...++++.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 455 KKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhcccHHHHHH
Confidence 3344444444444444444433
No 14
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=24.64 E-value=14 Score=32.52 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHH--------HhhccchhhhcCcchHHH
Q 002225 888 DEVDTLSGLLEKIYI--------ALDHYSSVLQHYPGVSFF 920 (951)
Q Consensus 888 DeVd~LLsLLeKIYi--------ALDHYSPVLQHYpGV~d~ 920 (951)
-+=..+.-||.++|. +-+--+|++|||||..++
T Consensus 12 qKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l 52 (69)
T 2kfd_A 12 QKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKAL 52 (69)
T ss_dssp HHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGG
T ss_pred HHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHh
Confidence 344567789999999 667788999999998764
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.29 E-value=1.1e+02 Score=25.63 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhhHHHhhHHHH
Q 002225 849 KRLILKANVITRTGLSYKQKLERRCSDLQKAEAEV 883 (951)
Q Consensus 849 ~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqKAEaEV 883 (951)
..|++||.+||+.....++-|+.-.+.|-|-|.|-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 56899999999999999999999999999999873
No 16
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=22.41 E-value=4.9e+02 Score=28.69 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHhhHHHHHHHhHHHHHHHHHHhhhcCCCCCcccccccHHHhhhHHHHHHhHHHHHhhcCCCcccccchhcccCchh---
Q 002225 381 KRIHELKVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDILVENEKLPAFSENAEGLCNFKD--- 457 (951)
Q Consensus 381 kR~HEs~lqeKTEELF~lKRE~lkerGSsl~lrkdkEfe~lRKKIpeVIsKLD~Il~~N~kl~~f~~~~~~~~~lkd--- 457 (951)
+.+-+..+.+-+.-+..+..-.- .+|+.+- =++|-++|..+.|++....+-.+..-.-+.++.|.|
T Consensus 181 ~~~f~~~~~~l~~~l~~v~~A~~-------~l~~S~~----l~~lL~~iL~~GN~mN~g~rg~A~GFkL~sL~KL~d~Ks 249 (402)
T 4eah_A 181 LGNFQDNLQMLTPQLNAIIAASA-------SVKSSQK----LKQMLEIILALGNYMNSSKRGAVYGFKLQSLDLLLDTKS 249 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHTCHH----HHHHHHHHHHHHHHHHCSSSCCCSCBCGGGGGSSSSSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHccHH----HHHHHHHHHHHhhhccCCCCCccceeeHHHHHHHHhccC
Confidence 44445555555555555544321 1222222 256889999999999987442332222344444433
Q ss_pred --hhhHHHhhhhhhhhhhhhhHHHhhhhhhhhhh--HHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhh
Q 002225 458 --RLESLLLENRQLRSLLTDKKNEVKRLSLKVSD--TAEIMLQRSLTEENLVKRIGNLQGALDDAHIEASITEGVYKCLL 533 (951)
Q Consensus 458 --Ri~sL~~EN~qLrdlLadk~kevk~lSsqvSd--A~~k~s~~s~~Ee~L~kqI~kLk~d~ED~~IE~~IrE~VYkc~l 533 (951)
+--+|++ .+-..+.++--++-.+.+.+.. .+.+++. ++|...+..|+..++.+.-+....+ ...+
T Consensus 250 ~d~k~TLLh---~l~~~~~~~~p~l~~f~~eL~~v~~Aa~v~~-----~~l~~d~~~L~~~l~~~~~e~~~~d---~~~l 318 (402)
T 4eah_A 250 TDRKMTLLH---FIALTVKEKYPELANFWQELHFVEKAAAVSL-----ENVLLDVKELGRGMELIRRECSIHD---NSVL 318 (402)
T ss_dssp TTSSSBHHH---HHHHHHHHHCGGGGTCSTTCCSHHHHHTCCH-----HHHHHHHHHHHHHHHHHHHHHHTTC---CTTT
T ss_pred CCCCccHHH---HHHHHHHhhhHHHHHHhhhhhhHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhcccc---hHHH
Confidence 2223332 2222233333333334433331 2233333 3345556666666655443333333 2455
Q ss_pred hhhhhhhhhhcccchhHHHHHHHHHHH
Q 002225 534 GEAADFIKSVSKKSDLEYELMQEVYEI 560 (951)
Q Consensus 534 re~v~~~~~~~e~~~le~~i~~EIy~i 560 (951)
++++......++.....+.-+++.|.-
T Consensus 319 ~~Fl~~a~~~~~~L~~~~~~~~~~~~~ 345 (402)
T 4eah_A 319 RNFLSTNEGKLDKLQRDAKTAEEAYNA 345 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555555555543
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.60 E-value=9.5e+02 Score=30.02 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHH
Q 002225 774 LEQIEQYKLEVHDLKQKLELAMKELRDTNEE 804 (951)
Q Consensus 774 Leqi~~~K~el~~L~~~L~~~s~~LkE~~eq 804 (951)
-.++...++++.+|+..+.....+++++++.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665555554443
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.37 E-value=5.3e+02 Score=24.12 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=21.7
Q ss_pred HhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhhhHHHh
Q 002225 832 ADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRCSDLQK 878 (951)
Q Consensus 832 ~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~RcsnLqK 878 (951)
.++.....|++....+...|... |+.++.-|++|.+
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~-----------kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAK-----------KRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34445566666666666666554 5556666666665
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=20.25 E-value=5e+02 Score=23.73 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHhh
Q 002225 808 QVQLLVIFIQGLSKTVADFECRAVADIERCNFRLDSLSSQSKRLILKANVITRTGLSYKQKLERRC 873 (951)
Q Consensus 808 QLesilvsi~~lsk~f~dfE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkkk~l~YKq~le~Rc 873 (951)
.+..+-.+|.+|...|.|+-..+.+- ...-.|.+.=-.+-..=+++|+.--+++..|++.-.+++
T Consensus 22 eI~~Ie~~I~eL~~iF~dla~lV~eQ-ge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 22 EIIKLENSIRELHDMFMDMAMLVESQ-GEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 35555566778888888887777653 335556666666777778888888888889988766654
No 20
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=20.02 E-value=1.4e+02 Score=28.48 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred hhhhhHHHhhhhhhhhHhHhHHhhhcccccccccccHHHHHHHHHHhHHHHHHHH
Q 002225 734 LSKSLSQELSHLRDETSRQQILISKSSKEFNDLKGNLTDALEQIEQYKLEVHDLK 788 (951)
Q Consensus 734 ~~elv~qel~~Lr~~~~~q~~lIse~~~e~~~~~~~l~~aLeqi~~~K~el~~L~ 788 (951)
++-++++=+..|.+.++.-+.-|+.--+.+.-.+.|++.|..|+......+.+|-
T Consensus 75 qlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklm 129 (142)
T 1pl5_A 75 QLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLM 129 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3333444444566667777777777777777788899999888887767776664
Done!