Query 002225
Match_columns 951
No_of_seqs 49 out of 51
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 17:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d2sa1 a.118.17.2 (A:525-753) 30.5 2.1E+02 0.015 26.6 12.9 68 866-933 106-177 (229)
2 d1zs3a1 a.25.1.1 (A:3-173) Dod 26.6 1.6E+02 0.011 27.0 9.9 105 138-261 55-159 (171)
3 d1bh9b_ a.22.1.3 (B:) TAF(II)2 14.1 47 0.0034 28.3 2.7 27 595-621 39-65 (89)
4 d2h9da1 a.130.1.1 (A:1-94) Sal 12.8 1.1E+02 0.0083 25.0 4.9 24 454-480 12-35 (94)
5 d1ugoa_ a.7.7.1 (A:) BAG-famil 10.7 1.2E+02 0.0089 25.8 4.4 46 387-436 19-64 (99)
6 d1o3xa_ a.7.8.1 (A:) ADP-ribos 9.2 1.1E+02 0.0077 26.3 3.5 49 868-916 19-77 (112)
7 d1zuja1 a.25.1.1 (A:6-173) Dod 9.1 2.6E+02 0.019 25.2 6.4 103 140-261 54-156 (168)
8 d1ls1a1 a.24.13.1 (A:1-88) Sig 8.6 3.4E+02 0.025 22.2 6.5 83 200-292 1-86 (88)
9 d1qgoa_ c.92.1.2 (A:) Cobalt c 8.6 33 0.0024 32.3 -0.2 40 883-922 209-248 (257)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 7.9 5.2E+02 0.038 21.0 9.7 35 826-860 66-100 (107)
No 1
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.52 E-value=2.1e+02 Score=26.64 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=45.2
Q ss_pred HHHHHHhhhHHHhhHHHHhhccchHHHHHHHH----HHHHHHhhccchhhhcCcchHHHHHHhhcccccccc
Q 002225 866 KQKLERRCSDLQKAEAEVDLLGDEVDTLSGLL----EKIYIALDHYSSVLQHYPGVSFFFFYCFCNFNVSEF 933 (951)
Q Consensus 866 Kq~le~RcsnLqKAEaEVDLLGDeVd~LLsLL----eKIYiALDHYSPVLQHYpGV~d~l~~~~~~~~~~~~ 933 (951)
..-|..|..-|++.=..+.--||.+..+..|- .=|+-|-.-|-.++.-.++.+...++++|+-.++.|
T Consensus 106 ~lfL~~rs~~l~~~i~~~~~~~~~~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~~sS~lv~Wa~~ei~~f 177 (229)
T d2d2sa1 106 DLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNH 177 (229)
T ss_dssp HHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHH
Confidence 33466677777777777777888887766663 345556788888885555556677888887766654
No 2
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]}
Probab=26.56 E-value=1.6e+02 Score=27.00 Aligned_cols=105 Identities=8% Similarity=0.037 Sum_probs=72.7
Q ss_pred cccccccchHHHHHHHHhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhh
Q 002225 138 IGESVGGLKNVAKEQLKNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADN 217 (951)
Q Consensus 138 ~~e~l~~lk~~~~~ql~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~ 217 (951)
+-++++.+-..+.++++.+-+.|..+-|..+.. -++..-+.+|.+++... +....+.++..|..-.+++-..++.
T Consensus 55 lH~~fee~y~~~~~~~D~iAEri~~lG~~p~~t----~~e~~e~s~i~e~~~~~-~~~s~~eml~~Lv~d~~~~~~~~~~ 129 (171)
T d1zs3a1 55 KCEYLREIAQREVEYFFKISDLLLDENEIVPST----TEEFLKYHKFITEDPKA-KYWTDEDLLESFIVDFQAQNMFITR 129 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS----HHHHHHHCCSCCCCGGG-GGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcc----HHHHHHHccCccCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888999999999888877665432 11222334444444444 6778888888888877777777666
Q ss_pred hhhccccchhhhhHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhh
Q 002225 218 TVYLSKASLCQWQQEKEFQGEIEDMVIMNCFRSLKEEFEERLCD 261 (951)
Q Consensus 218 m~~l~~~s~~~~q~E~e~q~Ei~~ivI~~~ir~LqeEfE~kL~e 261 (951)
.+-+. .+-..-.+.+.+.++..+.|...|=
T Consensus 130 ~i~~A--------------~~e~D~~tadll~d~~~~~eK~iWm 159 (171)
T d1zs3a1 130 AIKLA--------------NKEEKFALAAGVVELYGYNLQVIRN 159 (171)
T ss_dssp HHHHH--------------HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 64332 2334567888999999999998887
No 3
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.09 E-value=47 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhcch
Q 002225 595 ASISEGVYKCLLREAVDSIKSVSEKSD 621 (951)
Q Consensus 595 ~~i~e~v~~vllrE~vkE~k~~~e~~~ 621 (951)
.|.+-|+.++|+.|+|.+|..+.++++
T Consensus 39 ~i~v~giaKvFvGEiVE~A~~V~~~~~ 65 (89)
T d1bh9b_ 39 VIAMSGISKVFVGEVVEEALDVCEKWG 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999887765
No 4
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.81 E-value=1.1e+02 Score=25.04 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=14.2
Q ss_pred CchhhhhHHHhhhhhhhhhhhhhHHHh
Q 002225 454 NFKDRLESLLLENRQLRSLLTDKKNEV 480 (951)
Q Consensus 454 ~lkdRi~sL~~EN~qLrdlLadk~kev 480 (951)
.+..+||.+. .+|=.+|+.++.=+
T Consensus 12 ~lR~~ID~ID---~~i~~LL~~R~~l~ 35 (94)
T d2h9da1 12 DIREAIDRID---LDIVQALGRRMDYV 35 (94)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3555565554 45557788776544
No 5
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.68 E-value=1.2e+02 Score=25.79 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=36.1
Q ss_pred HHHHHhHHHHHHHHHHhhhcCCCCCcccccccHHHhhhHHHHHHhHHHHH
Q 002225 387 KVTEMTEDLFALKREYLKERGSSLPIKKDKEFDILRKKIPEVLSKLDDIL 436 (951)
Q Consensus 387 ~lqeKTEELF~lKRE~lkerGSsl~lrkdkEfe~lRKKIpeVIsKLD~Il 436 (951)
+|++-++++-.|+.+...-.|. +.|+|+-.|-.-+...+.|||.|=
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~----~~dke~~~L~E~L~~~LlkLD~Ie 64 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGL----SDDKNYKRLERILTKQLFEIDSVD 64 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCC----TTSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHHHHHhcCcc
Confidence 4666777777788877654443 578999999999999999999984
No 6
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.16 E-value=1.1e+02 Score=26.35 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=36.2
Q ss_pred HHHHhhhHHHhhHHHHhhccchHHH----------HHHHHHHHHHHhhccchhhhcCcc
Q 002225 868 KLERRCSDLQKAEAEVDLLGDEVDT----------LSGLLEKIYIALDHYSSVLQHYPG 916 (951)
Q Consensus 868 ~le~RcsnLqKAEaEVDLLGDeVd~----------LLsLLeKIYiALDHYSPVLQHYpG 916 (951)
...+|.++|.++..-|.||++=.++ -..|+.-.|-++..+.|.++++.+
T Consensus 19 ~~~k~~~eLe~v~~n~~lL~eML~~~~~~~~~~~~~~ell~eL~~~c~~~qp~i~~li~ 77 (112)
T d1o3xa_ 19 KISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLAS 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445567777777777777644433 346999999999999999999864
No 7
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsA [TaxId: 1358]}
Probab=9.11 E-value=2.6e+02 Score=25.20 Aligned_cols=103 Identities=7% Similarity=0.011 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHhhhhhhccccccccccccCCCCcccccccccccccccchhhhhHHhhHHHHHHHHHHHhhhhhhh
Q 002225 140 ESVGGLKNVAKEQLKNLRKEIDRIKGCSSLRRIGSGSEMVGLGGILQDKVSDIRWMDVDKALDSLRTTLDTIFNCADNTV 219 (951)
Q Consensus 140 e~l~~lk~~~~~ql~~L~~~i~~~~~~~~~~~~~sgs~~~gl~gil~~~~~~~~~~~vd~~~d~Lk~~ld~vf~~~~~m~ 219 (951)
+.++.+-..+.++++.+-+.|..+-|..+.. =.+......|..+..+. +.+..+.++..|-.-.+++-..++..+
T Consensus 54 ~~fee~y~~~~~~~D~iAEri~~lG~~~~~t----~~e~~~~s~i~E~~~~~-~~~s~~~ml~~li~d~~~~~~~~~~~i 128 (168)
T d1zuja1 54 IKFREIALKEDEWFYLISEQLLDENELVPTT----LDEFVSNHKFIENDPKA-KYWTDEALIENFINDFQNQNLFIGRAI 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS----HHHHHHHCCSCCCCTTG-GGSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCc----HHHHHHHccCccccccc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888899999999888776654432 01122333444333334 677788888888777777766666654
Q ss_pred hccccchhhhhHHHHHHhhHHHHHHHHHHhhhHHHHHHHHhh
Q 002225 220 YLSKASLCQWQQEKEFQGEIEDMVIMNCFRSLKEEFEERLCD 261 (951)
Q Consensus 220 ~l~~~s~~~~q~E~e~q~Ei~~ivI~~~ir~LqeEfE~kL~e 261 (951)
-+.. +-..-.+.+.+.++..++|..+|=
T Consensus 129 ~~A~--------------~~~D~~t~~~l~~~l~~~ek~iWm 156 (168)
T d1zuja1 129 KLAQ--------------KEEKFSLELAIRKLYGYNLSIIPY 156 (168)
T ss_dssp HHHH--------------HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4332 223345778889999999998887
No 8
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=8.62 E-value=3.4e+02 Score=22.19 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhccccchhhhhHHH---HHHhhHHHHHHHHHHhhhHHHHHHHHhhhhhhhccchhhhhHh
Q 002225 200 ALDSLRTTLDTIFNCADNTVYLSKASLCQWQQEK---EFQGEIEDMVIMNCFRSLKEEFEERLCDQSAQFYDNESLNWLG 276 (951)
Q Consensus 200 ~~d~Lk~~ld~vf~~~~~m~~l~~~s~~~~q~E~---e~q~Ei~~ivI~~~ir~LqeEfE~kL~eQ~~~~~~~~s~nw~e 276 (951)
||++|..-+..+|+.+..--.+++..+.+.-+|- -++.+|.=-|+..++...++.. -.+.- ....+. ..
T Consensus 1 MF~~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~ALLeADV~l~vvk~f~~~ik~k~----~g~~v--~~~~~p--~~ 72 (88)
T d1ls1a1 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEA----LGKQV--LESLTP--AE 72 (88)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHTTT--TTCSCH--HH
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHH----hHHHh--hcCCCH--HH
Confidence 5899999999999999888778877776665432 3455666666666666665553 32211 111210 11
Q ss_pred HHHHHHHHHHHHHHhh
Q 002225 277 KIKEISSLREELNAIS 292 (951)
Q Consensus 277 ~v~eissLR~EL~aI~ 292 (951)
.+ |..+++||..+.
T Consensus 73 ~i--ikiV~dELv~lL 86 (88)
T d1ls1a1 73 VI--LATVYEALKEAL 86 (88)
T ss_dssp HH--HHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHHh
Confidence 22 457888887764
No 9
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=8.55 E-value=33 Score=32.32 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=27.8
Q ss_pred HhhccchHHHHHHHHHHHHHHhhccchhhhcCcchHHHHH
Q 002225 883 VDLLGDEVDTLSGLLEKIYIALDHYSSVLQHYPGVSFFFF 922 (951)
Q Consensus 883 VDLLGDeVd~LLsLLeKIYiALDHYSPVLQHYpGV~d~l~ 922 (951)
-|+.|+..|++-+-|.+.=+..+.|.|-|=.||+|.+++.
T Consensus 209 ~Di~~~~~~s~~~~l~~~g~~v~~~~~~LG~~p~i~~l~~ 248 (257)
T d1qgoa_ 209 NDMASDDGDSWKMRFNAAGIPATPWLSGLGENPAIRAMFV 248 (257)
T ss_dssp TTTTSSSTTSHHHHHHHTTCCEEECCCCGGGSHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhcCCeeeeeccCCCCCHHHHHHHH
Confidence 4677777777666666666666677777777777777764
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.88 E-value=5.2e+02 Score=21.03 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=19.9
Q ss_pred HHHHHHHhHHHhhhhhhhhHHhhHHHHHHHHHHhh
Q 002225 826 FECRAVADIERCNFRLDSLSSQSKRLILKANVITR 860 (951)
Q Consensus 826 fE~~v~~kle~n~~Rle~L~~q~~~Lv~qa~~Lkk 860 (951)
.-..+..+++..+.|++.+..|+..+-++...+++
T Consensus 66 ~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666666666666555443
Done!