Query 002226
Match_columns 951
No_of_seqs 429 out of 3348
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1045 Uncharacterized conser 100.0 6.5E-42 1.4E-46 374.9 4.6 382 281-731 6-396 (404)
2 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.9E-17 4E-22 174.7 10.4 176 696-901 40-220 (243)
3 KOG1045 Uncharacterized conser 99.7 4.1E-18 9E-23 188.4 3.8 243 685-942 20-268 (404)
4 PLN02396 hexaprenyldihydroxybe 99.7 4.1E-16 9E-21 171.8 18.8 176 698-901 106-294 (322)
5 PRK11036 putative S-adenosyl-L 99.6 2.9E-14 6.3E-19 150.7 19.3 190 684-898 10-209 (255)
6 COG2226 UbiE Methylase involve 99.6 9.5E-15 2.1E-19 155.1 14.8 116 695-825 34-149 (238)
7 PRK11088 rrmA 23S rRNA methylt 99.6 9.5E-15 2.1E-19 156.1 14.2 154 649-837 18-187 (272)
8 PF01209 Ubie_methyltran: ubiE 99.6 8.2E-15 1.8E-19 154.8 11.7 113 703-829 38-151 (233)
9 PLN02233 ubiquinone biosynthes 99.6 4.8E-14 1E-18 150.6 17.4 120 704-834 65-185 (261)
10 PF13489 Methyltransf_23: Meth 99.6 3.4E-14 7.4E-19 136.3 13.0 143 703-893 12-159 (161)
11 KOG1270 Methyltransferases [Co 99.6 1.2E-14 2.6E-19 155.0 10.2 176 695-898 61-251 (282)
12 TIGR02021 BchM-ChlM magnesium 99.5 2.7E-13 5.8E-18 139.8 19.2 160 703-896 44-205 (219)
13 PF08241 Methyltransf_11: Meth 99.5 6.1E-14 1.3E-18 122.7 10.9 94 717-829 1-95 (95)
14 PF12847 Methyltransf_18: Meth 99.5 1.9E-13 4E-18 125.0 13.3 108 712-832 1-112 (112)
15 PLN02244 tocopherol O-methyltr 99.5 5.3E-13 1.2E-17 147.7 18.7 108 711-833 117-225 (340)
16 PTZ00098 phosphoethanolamine N 99.5 3E-13 6.6E-18 144.6 16.1 127 691-833 31-158 (263)
17 PRK14103 trans-aconitate 2-met 99.5 4.1E-13 8.8E-18 141.8 16.0 107 704-833 21-128 (255)
18 PRK10258 biotin biosynthesis p 99.5 8E-13 1.7E-17 138.8 17.4 119 696-836 26-145 (251)
19 PRK11207 tellurite resistance 99.5 3.5E-13 7.5E-18 138.1 14.2 111 703-829 21-132 (197)
20 PF02353 CMAS: Mycolic acid cy 99.5 2E-13 4.4E-18 147.4 12.8 150 654-830 14-165 (273)
21 PLN02585 magnesium protoporphy 99.5 1.7E-12 3.7E-17 143.0 19.8 170 699-899 128-301 (315)
22 PF13847 Methyltransf_31: Meth 99.5 3.9E-13 8.5E-18 131.0 12.5 106 712-833 3-112 (152)
23 COG2230 Cfa Cyclopropane fatty 99.5 5E-13 1.1E-17 144.9 14.6 159 630-825 10-169 (283)
24 PRK15068 tRNA mo(5)U34 methylt 99.5 9.4E-13 2E-17 145.1 16.4 117 700-832 110-227 (322)
25 TIGR02752 MenG_heptapren 2-hep 99.4 1.6E-12 3.5E-17 134.3 15.8 117 702-832 35-152 (231)
26 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.4E-12 2.9E-17 137.9 15.3 125 695-832 37-165 (247)
27 TIGR00477 tehB tellurite resis 99.4 3E-12 6.5E-17 131.0 16.2 110 703-829 21-131 (195)
28 PRK07580 Mg-protoporphyrin IX 99.4 7.3E-12 1.6E-16 128.7 19.1 161 701-895 49-212 (230)
29 PF13649 Methyltransf_25: Meth 99.4 2.3E-13 5E-18 124.1 7.1 97 716-825 1-100 (101)
30 PRK06202 hypothetical protein; 99.4 3.4E-12 7.3E-17 133.0 16.2 110 710-835 58-170 (232)
31 PF07021 MetW: Methionine bios 99.4 2E-12 4.4E-17 133.3 13.9 152 702-893 5-163 (193)
32 TIGR00452 methyltransferase, p 99.4 3.8E-12 8.2E-17 140.3 16.2 162 700-897 109-274 (314)
33 TIGR00740 methyltransferase, p 99.4 3.5E-12 7.6E-17 133.4 15.0 125 695-832 34-162 (239)
34 TIGR03587 Pse_Me-ase pseudamin 99.4 2.8E-12 6.1E-17 132.8 13.9 118 695-832 25-143 (204)
35 PRK12335 tellurite resistance 99.4 5.4E-12 1.2E-16 136.3 15.9 107 709-832 117-224 (287)
36 PLN02336 phosphoethanolamine N 99.4 6.5E-12 1.4E-16 143.8 16.8 116 701-833 255-371 (475)
37 TIGR01983 UbiG ubiquinone bios 99.4 2.3E-11 4.9E-16 124.8 18.9 175 696-899 25-206 (224)
38 PRK05785 hypothetical protein; 99.4 4.2E-12 9.2E-17 133.2 13.0 100 712-835 51-152 (226)
39 TIGR02081 metW methionine bios 99.4 1.2E-11 2.6E-16 125.7 15.8 158 702-894 5-164 (194)
40 PRK01683 trans-aconitate 2-met 99.4 5.3E-12 1.1E-16 132.9 12.9 110 704-834 23-133 (258)
41 PRK11705 cyclopropane fatty ac 99.3 9.9E-12 2.1E-16 140.1 15.4 161 631-832 107-268 (383)
42 PRK08317 hypothetical protein; 99.3 1.5E-11 3.3E-16 124.9 15.1 122 697-833 4-126 (241)
43 PRK05134 bifunctional 3-demeth 99.3 5.6E-11 1.2E-15 123.2 18.6 175 695-899 31-208 (233)
44 TIGR02072 BioC biotin biosynth 99.3 1.1E-11 2.4E-16 126.5 12.6 107 711-836 33-140 (240)
45 PF05401 NodS: Nodulation prot 99.3 1.3E-11 2.7E-16 128.0 12.6 124 692-833 21-148 (201)
46 PF03848 TehB: Tellurite resis 99.3 1.6E-11 3.5E-16 127.0 13.0 111 704-831 22-133 (192)
47 smart00828 PKS_MT Methyltransf 99.3 3.7E-11 8.1E-16 123.6 15.4 105 714-833 1-106 (224)
48 TIGR02469 CbiT precorrin-6Y C5 99.3 4.6E-11 9.9E-16 110.2 13.6 116 698-831 5-122 (124)
49 TIGR03840 TMPT_Se_Te thiopurin 99.3 5.1E-11 1.1E-15 124.6 13.6 117 712-833 34-154 (213)
50 PF08242 Methyltransf_12: Meth 99.3 1.2E-12 2.6E-17 118.3 1.1 96 717-827 1-98 (99)
51 PRK11873 arsM arsenite S-adeno 99.3 4.4E-11 9.6E-16 127.3 13.1 109 710-832 75-184 (272)
52 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.5E-10 3.3E-15 129.0 16.9 104 711-832 112-216 (340)
53 PRK00216 ubiE ubiquinone/menaq 99.2 1.3E-10 2.8E-15 119.0 15.1 115 704-831 43-158 (239)
54 PRK13944 protein-L-isoaspartat 99.2 1.3E-10 2.8E-15 119.9 14.8 113 701-832 61-174 (205)
55 PRK00121 trmB tRNA (guanine-N( 99.2 2.7E-11 5.8E-16 124.8 9.2 131 693-838 23-163 (202)
56 TIGR00080 pimt protein-L-isoas 99.2 1.6E-10 3.5E-15 119.6 14.2 113 699-831 64-177 (215)
57 PLN02336 phosphoethanolamine N 99.2 8.7E-11 1.9E-15 134.6 13.1 111 702-829 27-140 (475)
58 PRK13942 protein-L-isoaspartat 99.2 2.2E-10 4.7E-15 119.1 14.2 114 698-831 62-176 (212)
59 smart00138 MeTrc Methyltransfe 99.2 1.5E-10 3.3E-15 124.3 12.6 118 712-829 99-240 (264)
60 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 4.3E-10 9.4E-15 114.0 15.2 114 702-831 29-143 (223)
61 KOG1540 Ubiquinone biosynthesi 99.2 3.6E-10 7.8E-15 120.8 14.8 126 701-837 89-220 (296)
62 TIGR00138 gidB 16S rRNA methyl 99.2 3.3E-10 7.1E-15 115.6 13.5 103 710-832 40-143 (181)
63 PRK00107 gidB 16S rRNA methylt 99.2 2.2E-10 4.8E-15 117.7 12.1 99 712-830 45-144 (187)
64 PF08003 Methyltransf_9: Prote 99.1 3.1E-10 6.8E-15 124.2 13.1 166 700-899 103-270 (315)
65 PRK13255 thiopurine S-methyltr 99.1 5.3E-10 1.1E-14 117.4 14.3 117 711-832 36-156 (218)
66 KOG1271 Methyltransferases [Ge 99.1 1.5E-10 3.2E-15 118.7 9.1 168 661-843 13-193 (227)
67 PRK08287 cobalt-precorrin-6Y C 99.1 7.6E-10 1.6E-14 111.9 13.9 119 693-831 12-131 (187)
68 PRK06922 hypothetical protein; 99.1 5.1E-10 1.1E-14 132.7 13.8 109 709-831 415-537 (677)
69 COG4106 Tam Trans-aconitate me 99.1 2.2E-10 4.8E-15 120.1 7.9 110 704-834 22-132 (257)
70 PF05175 MTS: Methyltransferas 99.1 2.7E-09 5.8E-14 107.1 15.4 137 692-842 11-152 (170)
71 PLN03075 nicotianamine synthas 99.1 1.6E-09 3.6E-14 118.7 14.5 110 711-832 122-234 (296)
72 TIGR00537 hemK_rel_arch HemK-r 99.1 2.6E-09 5.6E-14 107.3 14.8 113 703-833 10-142 (179)
73 PRK00312 pcm protein-L-isoaspa 99.1 1.7E-09 3.8E-14 111.3 13.8 109 701-832 67-176 (212)
74 TIGR00091 tRNA (guanine-N(7)-) 99.1 6.7E-10 1.4E-14 113.6 10.4 115 712-839 16-140 (194)
75 TIGR02716 C20_methyl_CrtF C-20 99.0 2.6E-09 5.7E-14 116.1 14.4 115 702-831 139-254 (306)
76 TIGR03438 probable methyltrans 99.0 3.4E-09 7.4E-14 115.7 14.7 109 712-831 63-177 (301)
77 PRK07402 precorrin-6B methylas 99.0 7E-09 1.5E-13 105.8 14.3 122 694-834 22-145 (196)
78 PF13659 Methyltransf_26: Meth 99.0 1.8E-09 3.8E-14 99.8 8.8 108 713-833 1-117 (117)
79 TIGR03534 RF_mod_PrmC protein- 99.0 1.1E-08 2.5E-13 106.4 15.0 121 697-832 73-218 (251)
80 TIGR01177 conserved hypothetic 99.0 6E-09 1.3E-13 114.9 13.6 124 696-834 166-297 (329)
81 PRK15001 SAM-dependent 23S rib 98.9 1.4E-08 3E-13 114.9 16.0 119 701-830 217-339 (378)
82 KOG4300 Predicted methyltransf 98.9 7.8E-09 1.7E-13 108.0 12.5 110 707-832 71-183 (252)
83 PRK00377 cbiT cobalt-precorrin 98.9 1.1E-08 2.3E-13 104.9 13.0 115 703-833 31-147 (198)
84 PRK09489 rsmC 16S ribosomal RN 98.9 1.7E-08 3.6E-13 112.8 15.3 115 702-832 186-304 (342)
85 PRK14121 tRNA (guanine-N(7)-)- 98.9 8.5E-09 1.8E-13 116.8 12.9 123 704-839 114-243 (390)
86 PF01135 PCMT: Protein-L-isoas 98.9 5.2E-09 1.1E-13 109.6 10.0 115 698-832 58-173 (209)
87 cd02440 AdoMet_MTases S-adenos 98.9 2.1E-08 4.6E-13 86.1 12.1 101 715-830 1-103 (107)
88 PRK14968 putative methyltransf 98.9 3.5E-08 7.5E-13 98.0 15.2 116 703-832 14-149 (188)
89 PRK13943 protein-L-isoaspartat 98.9 1.3E-08 2.9E-13 112.8 13.4 112 700-831 68-180 (322)
90 PRK14967 putative methyltransf 98.9 3.7E-08 7.9E-13 102.7 15.1 118 709-842 33-171 (223)
91 PRK13256 thiopurine S-methyltr 98.9 2.8E-08 6.2E-13 105.4 13.8 117 711-831 42-163 (226)
92 PRK04266 fibrillarin; Provisio 98.8 3.2E-08 7E-13 104.7 13.5 107 708-833 68-178 (226)
93 TIGR00406 prmA ribosomal prote 98.8 3.2E-08 6.8E-13 107.6 13.7 102 712-833 159-261 (288)
94 TIGR03533 L3_gln_methyl protei 98.8 5.5E-08 1.2E-12 105.8 15.4 110 711-833 120-253 (284)
95 TIGR00536 hemK_fam HemK family 98.8 6.7E-08 1.4E-12 104.7 15.3 107 714-834 116-247 (284)
96 COG2518 Pcm Protein-L-isoaspar 98.8 4.3E-08 9.2E-13 102.9 13.0 109 701-832 61-170 (209)
97 PRK00517 prmA ribosomal protei 98.8 3.4E-08 7.3E-13 105.1 12.5 95 711-832 118-214 (250)
98 KOG2899 Predicted methyltransf 98.8 7.5E-08 1.6E-12 102.7 14.8 195 711-925 57-285 (288)
99 KOG1541 Predicted protein carb 98.8 2.9E-08 6.3E-13 104.7 11.1 114 696-829 32-158 (270)
100 PRK11188 rrmJ 23S rRNA methylt 98.8 5.8E-08 1.3E-12 101.2 12.7 108 711-841 50-176 (209)
101 PF03291 Pox_MCEL: mRNA cappin 98.8 3.4E-08 7.5E-13 110.0 11.1 120 712-835 62-190 (331)
102 PRK09328 N5-glutamine S-adenos 98.8 1E-07 2.2E-12 101.1 14.2 114 702-829 98-236 (275)
103 smart00650 rADc Ribosomal RNA 98.7 6.8E-08 1.5E-12 96.6 11.8 88 702-807 3-90 (169)
104 PRK11805 N5-glutamine S-adenos 98.7 1.6E-07 3.4E-12 103.5 15.2 108 713-833 134-265 (307)
105 PF05724 TPMT: Thiopurine S-me 98.7 4E-08 8.6E-13 103.5 9.6 157 708-900 33-193 (218)
106 COG2264 PrmA Ribosomal protein 98.7 9.4E-08 2E-12 105.1 12.7 114 701-836 153-268 (300)
107 KOG3010 Methyltransferase [Gen 98.7 1.6E-08 3.5E-13 107.7 6.5 119 685-825 10-129 (261)
108 PRK14904 16S rRNA methyltransf 98.7 8.4E-08 1.8E-12 110.2 12.7 118 703-834 241-380 (445)
109 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.1E-07 2.3E-12 102.3 11.4 116 706-833 65-201 (264)
110 PRK14901 16S rRNA methyltransf 98.7 1.7E-07 3.7E-12 107.4 13.5 120 702-833 242-386 (434)
111 COG2242 CobL Precorrin-6B meth 98.7 2.9E-07 6.3E-12 95.2 13.8 119 694-831 16-135 (187)
112 PLN02781 Probable caffeoyl-CoA 98.6 5.5E-07 1.2E-11 95.6 15.1 163 701-899 57-225 (234)
113 PRK14903 16S rRNA methyltransf 98.6 2.7E-07 5.8E-12 106.0 13.6 119 703-833 228-368 (431)
114 TIGR00563 rsmB ribosomal RNA s 98.6 4.1E-07 8.9E-12 104.0 14.1 120 702-834 228-371 (426)
115 TIGR03704 PrmC_rel_meth putati 98.6 8.3E-07 1.8E-11 95.1 15.3 130 696-841 69-226 (251)
116 PRK14902 16S rRNA methyltransf 98.6 2.9E-07 6.3E-12 105.7 12.5 119 703-833 241-381 (444)
117 COG4976 Predicted methyltransf 98.6 1.9E-08 4.2E-13 106.4 2.6 106 706-833 119-227 (287)
118 PRK00811 spermidine synthase; 98.6 4.1E-07 8.8E-12 99.0 12.8 111 711-829 75-188 (283)
119 PRK10901 16S rRNA methyltransf 98.6 3.5E-07 7.7E-12 104.6 12.9 116 703-832 235-373 (427)
120 PRK03522 rumB 23S rRNA methylu 98.6 4.9E-07 1.1E-11 99.5 13.3 88 698-800 159-247 (315)
121 PHA03411 putative methyltransf 98.6 6.9E-07 1.5E-11 97.5 14.1 97 689-809 46-142 (279)
122 PTZ00146 fibrillarin; Provisio 98.6 4E-07 8.8E-12 100.0 12.0 104 709-830 129-236 (293)
123 TIGR00438 rrmJ cell division p 98.6 4.1E-07 8.9E-12 92.3 10.9 108 711-841 31-157 (188)
124 PF06325 PrmA: Ribosomal prote 98.5 4.3E-07 9.3E-12 100.0 11.5 101 711-833 160-261 (295)
125 PRK13168 rumA 23S rRNA m(5)U19 98.5 6.1E-07 1.3E-11 103.1 13.3 115 696-831 281-400 (443)
126 PLN02232 ubiquinone biosynthes 98.5 3.1E-07 6.8E-12 91.7 9.5 82 741-833 1-83 (160)
127 PRK14966 unknown domain/N5-glu 98.5 1.5E-06 3.3E-11 99.6 15.2 90 695-800 236-326 (423)
128 KOG1975 mRNA cap methyltransfe 98.5 4.5E-07 9.8E-12 100.0 10.4 118 711-836 116-242 (389)
129 COG4123 Predicted O-methyltran 98.5 6.9E-07 1.5E-11 96.2 11.2 126 704-841 36-180 (248)
130 PRK15128 23S rRNA m(5)C1962 me 98.5 6.4E-06 1.4E-10 94.1 18.5 141 712-901 220-373 (396)
131 PLN02366 spermidine synthase 98.5 1.8E-06 4E-11 95.5 13.7 110 711-829 90-203 (308)
132 COG2813 RsmC 16S RNA G1207 met 98.5 2.2E-06 4.7E-11 94.4 13.9 111 700-825 146-259 (300)
133 PRK04457 spermidine synthase; 98.4 1.5E-06 3.2E-11 93.9 12.1 110 711-832 65-178 (262)
134 PHA03412 putative methyltransf 98.4 1.8E-06 3.9E-11 92.6 12.3 118 691-830 32-161 (241)
135 PRK01544 bifunctional N5-gluta 98.4 3.5E-06 7.7E-11 98.8 15.5 108 712-832 138-270 (506)
136 PF05891 Methyltransf_PK: AdoM 98.4 3.2E-06 6.9E-11 89.5 13.1 146 712-897 55-201 (218)
137 PF00891 Methyltransf_2: O-met 98.4 1.9E-06 4.1E-11 90.5 11.4 104 704-830 92-198 (241)
138 PF01596 Methyltransf_3: O-met 98.4 3.6E-06 7.9E-11 88.2 13.3 164 695-899 28-197 (205)
139 TIGR00417 speE spermidine synt 98.4 3.1E-06 6.6E-11 91.4 13.0 111 711-830 71-185 (270)
140 PRK14896 ksgA 16S ribosomal RN 98.4 1.6E-06 3.5E-11 92.9 10.4 84 700-802 17-100 (258)
141 PRK00274 ksgA 16S ribosomal RN 98.4 1.1E-06 2.4E-11 95.0 8.8 82 701-800 31-112 (272)
142 PRK10909 rsmD 16S rRNA m(2)G96 98.4 3.2E-06 6.9E-11 88.2 11.9 119 698-833 38-161 (199)
143 PLN02476 O-methyltransferase 98.4 4.3E-06 9.3E-11 91.5 13.3 163 696-899 102-270 (278)
144 PRK01581 speE spermidine synth 98.3 3.7E-06 7.9E-11 95.1 12.8 114 710-831 148-267 (374)
145 KOG2361 Predicted methyltransf 98.3 2.5E-06 5.5E-11 91.3 10.7 172 714-921 73-251 (264)
146 PF06080 DUF938: Protein of un 98.3 8.5E-06 1.8E-10 85.7 14.3 161 715-916 28-204 (204)
147 TIGR00479 rumA 23S rRNA (uraci 98.3 4.1E-06 8.9E-11 95.7 12.8 113 698-830 278-395 (431)
148 TIGR02085 meth_trns_rumB 23S r 98.3 6.6E-06 1.4E-10 93.0 13.2 109 702-830 223-333 (374)
149 COG2263 Predicted RNA methylas 98.3 4.6E-06 9.9E-11 86.7 10.3 83 707-807 40-126 (198)
150 TIGR00755 ksgA dimethyladenosi 98.3 6E-06 1.3E-10 88.1 11.5 83 699-800 16-101 (253)
151 COG2519 GCD14 tRNA(1-methylade 98.2 5.7E-06 1.2E-10 89.2 10.8 122 695-835 77-199 (256)
152 PRK03612 spermidine synthase; 98.2 6.4E-06 1.4E-10 96.9 11.7 113 711-831 296-415 (521)
153 PTZ00338 dimethyladenosine tra 98.2 5.4E-06 1.2E-10 91.2 10.3 84 701-800 25-108 (294)
154 PF01170 UPF0020: Putative RNA 98.2 9.3E-06 2E-10 83.0 11.3 136 695-841 11-160 (179)
155 PRK04148 hypothetical protein; 98.2 1.9E-05 4.1E-10 78.2 12.5 79 702-802 6-86 (134)
156 COG2890 HemK Methylase of poly 98.2 6.2E-06 1.3E-10 90.1 9.8 71 715-800 113-183 (280)
157 PRK11783 rlmL 23S rRNA m(2)G24 98.2 6.1E-06 1.3E-10 100.3 10.3 110 712-833 538-657 (702)
158 KOG1499 Protein arginine N-met 98.1 1E-05 2.2E-10 90.4 10.7 110 710-833 58-168 (346)
159 PF02390 Methyltransf_4: Putat 98.1 8.2E-06 1.8E-10 84.7 8.7 115 714-841 19-143 (195)
160 PF01739 CheR: CheR methyltran 98.1 1.9E-05 4E-10 82.5 11.2 122 712-833 31-176 (196)
161 PF05219 DREV: DREV methyltran 98.1 2.5E-05 5.5E-10 84.7 12.2 93 712-830 94-187 (265)
162 PRK10611 chemotaxis methyltran 98.1 1.3E-05 2.8E-10 88.1 9.4 120 712-832 115-262 (287)
163 TIGR00478 tly hemolysin TlyA f 98.1 2.6E-05 5.7E-10 83.2 11.3 113 700-835 62-176 (228)
164 PLN02672 methionine S-methyltr 98.0 2.3E-05 5E-10 98.6 12.2 87 713-800 119-210 (1082)
165 COG4122 Predicted O-methyltran 98.0 4.1E-05 9E-10 81.4 12.0 117 698-830 45-164 (219)
166 PF10294 Methyltransf_16: Puta 98.0 6E-05 1.3E-09 76.6 12.2 127 694-833 21-158 (173)
167 PF08123 DOT1: Histone methyla 98.0 2.9E-05 6.2E-10 81.6 9.3 133 694-833 24-159 (205)
168 PF08704 GCD14: tRNA methyltra 97.9 5.1E-05 1.1E-09 82.0 11.1 124 694-835 22-150 (247)
169 PLN02589 caffeoyl-CoA O-methyl 97.9 6.5E-05 1.4E-09 81.1 11.8 117 698-830 65-188 (247)
170 COG0500 SmtA SAM-dependent met 97.9 0.00017 3.6E-09 62.6 12.1 104 716-835 52-159 (257)
171 KOG3420 Predicted RNA methylas 97.9 1.6E-05 3.5E-10 79.9 6.4 92 695-801 31-122 (185)
172 COG1041 Predicted DNA modifica 97.9 7E-05 1.5E-09 84.1 11.8 115 703-832 188-311 (347)
173 PF05185 PRMT5: PRMT5 arginine 97.9 6.7E-05 1.5E-09 87.1 11.6 105 713-829 187-294 (448)
174 COG0220 Predicted S-adenosylme 97.9 6.2E-05 1.3E-09 80.4 10.3 115 712-839 48-172 (227)
175 TIGR02143 trmA_only tRNA (urac 97.8 4.8E-05 1E-09 85.6 9.0 77 695-787 181-257 (353)
176 PF09243 Rsm22: Mitochondrial 97.8 9.7E-05 2.1E-09 80.5 11.0 112 709-833 30-141 (274)
177 KOG2940 Predicted methyltransf 97.8 2.3E-05 5E-10 83.6 5.9 103 712-832 72-174 (325)
178 TIGR00095 RNA methyltransferas 97.8 0.00027 5.8E-09 73.1 13.5 126 693-833 29-161 (189)
179 TIGR03439 methyl_EasF probable 97.8 0.00015 3.2E-09 81.1 12.2 108 712-831 76-197 (319)
180 PRK11727 23S rRNA mA1618 methy 97.8 7.7E-05 1.7E-09 83.4 9.7 79 712-801 114-197 (321)
181 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00024 5.3E-09 81.0 13.9 109 703-830 47-157 (382)
182 KOG1661 Protein-L-isoaspartate 97.8 0.00014 3E-09 77.0 10.3 132 694-837 66-199 (237)
183 PRK05031 tRNA (uracil-5-)-meth 97.8 7.6E-05 1.6E-09 84.2 9.0 74 697-786 192-265 (362)
184 PRK00050 16S rRNA m(4)C1402 me 97.7 6.3E-05 1.4E-09 83.2 7.8 85 702-800 9-97 (296)
185 PLN02823 spermine synthase 97.7 0.0003 6.5E-09 79.1 12.9 106 712-829 103-217 (336)
186 COG1352 CheR Methylase of chem 97.7 0.0002 4.3E-09 78.3 10.9 121 712-832 96-241 (268)
187 KOG1500 Protein arginine N-met 97.7 0.0002 4.2E-09 80.0 10.6 106 710-831 175-281 (517)
188 PF05148 Methyltransf_8: Hypot 97.7 0.00017 3.8E-09 76.3 9.0 114 685-834 46-161 (219)
189 PF03141 Methyltransf_29: Puta 97.6 4.7E-05 1E-09 88.6 5.2 112 701-833 102-221 (506)
190 COG3963 Phospholipid N-methylt 97.6 0.00043 9.2E-09 71.3 11.1 112 701-829 37-154 (194)
191 COG0030 KsgA Dimethyladenosine 97.6 0.00021 4.5E-09 77.9 9.4 83 701-800 19-102 (259)
192 PF05958 tRNA_U5-meth_tr: tRNA 97.6 0.00021 4.5E-09 80.5 9.6 78 695-788 180-257 (352)
193 COG2265 TrmA SAM-dependent met 97.6 0.00022 4.8E-09 82.6 9.6 90 695-799 276-368 (432)
194 COG0421 SpeE Spermidine syntha 97.6 0.00039 8.4E-09 76.6 11.0 109 713-831 77-189 (282)
195 KOG1331 Predicted methyltransf 97.6 8E-05 1.7E-09 81.6 5.6 98 712-832 45-144 (293)
196 PF09445 Methyltransf_15: RNA 97.6 0.00047 1E-08 70.5 10.7 113 714-841 1-130 (163)
197 PF12147 Methyltransf_20: Puta 97.6 0.0013 2.9E-08 72.7 14.5 109 711-831 134-248 (311)
198 PF02475 Met_10: Met-10+ like- 97.5 0.00023 5.1E-09 74.7 8.1 119 687-827 79-197 (200)
199 PRK01544 bifunctional N5-gluta 97.5 0.00033 7.1E-09 82.6 10.0 116 711-839 346-470 (506)
200 PF00035 dsrm: Double-stranded 97.5 0.00015 3.1E-09 61.5 5.1 36 57-92 32-67 (67)
201 PF13679 Methyltransf_32: Meth 97.5 0.0011 2.3E-08 65.2 11.2 85 711-807 24-113 (141)
202 KOG1269 SAM-dependent methyltr 97.4 0.00023 4.9E-09 80.9 7.1 103 712-829 110-212 (364)
203 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0011 2.5E-08 80.9 13.2 143 687-840 164-356 (702)
204 PRK00536 speE spermidine synth 97.4 0.0011 2.3E-08 72.5 11.6 99 711-830 71-169 (262)
205 PRK11933 yebU rRNA (cytosine-C 97.4 0.0016 3.5E-08 76.4 13.1 118 704-833 103-244 (470)
206 KOG3178 Hydroxyindole-O-methyl 97.3 0.001 2.3E-08 74.8 10.2 96 713-830 178-274 (342)
207 PF01564 Spermine_synth: Sperm 97.3 0.0017 3.8E-08 69.9 11.5 110 711-829 75-188 (246)
208 KOG3045 Predicted RNA methylas 97.3 0.00068 1.5E-08 73.8 8.1 114 686-837 155-270 (325)
209 COG0116 Predicted N6-adenine-s 97.2 0.0023 5E-08 73.1 12.0 136 687-833 166-346 (381)
210 COG1092 Predicted SAM-dependen 97.2 0.0096 2.1E-07 68.6 16.8 107 712-831 217-336 (393)
211 COG2520 Predicted methyltransf 97.2 0.0017 3.8E-08 73.3 10.5 117 687-826 166-283 (341)
212 PF07942 N2227: N2227-like pro 97.2 0.018 4E-07 63.3 17.6 155 712-897 56-242 (270)
213 KOG2904 Predicted methyltransf 97.1 0.0022 4.7E-08 70.5 9.9 95 695-801 128-230 (328)
214 smart00358 DSRM Double-strande 97.1 0.0016 3.5E-08 54.7 6.9 57 24-92 10-66 (67)
215 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0032 6.9E-08 68.8 10.9 122 702-833 36-185 (311)
216 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0045 9.8E-08 66.9 11.9 113 698-832 16-133 (262)
217 TIGR02987 met_A_Alw26 type II 97.1 0.0034 7.4E-08 74.0 11.5 77 712-800 31-119 (524)
218 PF04672 Methyltransf_19: S-ad 97.0 0.0042 9.1E-08 68.1 10.3 122 705-838 60-197 (267)
219 KOG0820 Ribosomal RNA adenine 96.9 0.0045 9.7E-08 68.1 9.5 81 703-799 49-129 (315)
220 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.013 2.9E-07 67.0 13.6 99 714-830 46-146 (374)
221 COG4076 Predicted RNA methylas 96.8 0.0019 4.1E-08 67.7 6.1 112 699-828 19-131 (252)
222 PRK11760 putative 23S rRNA C24 96.8 0.014 2.9E-07 66.3 12.9 87 711-825 210-296 (357)
223 PF02527 GidB: rRNA small subu 96.8 0.004 8.7E-08 64.7 7.9 96 715-830 51-146 (184)
224 KOG1663 O-methyltransferase [S 96.7 0.019 4E-07 62.0 12.6 116 698-829 59-180 (237)
225 COG4627 Uncharacterized protei 96.7 0.0006 1.3E-08 69.5 1.3 102 777-893 31-134 (185)
226 PF03602 Cons_hypoth95: Conser 96.7 0.0083 1.8E-07 62.1 9.5 125 695-834 23-156 (183)
227 PF10672 Methyltrans_SAM: S-ad 96.6 0.015 3.3E-07 64.4 11.2 139 670-833 93-239 (286)
228 PF04816 DUF633: Family of unk 96.6 0.025 5.3E-07 59.9 12.1 104 716-835 1-104 (205)
229 KOG3987 Uncharacterized conser 96.6 0.00051 1.1E-08 72.8 -0.4 87 712-824 112-198 (288)
230 cd00048 DSRM Double-stranded R 96.5 0.0071 1.5E-07 50.6 6.5 37 56-92 32-68 (68)
231 TIGR01444 fkbM_fam methyltrans 96.5 0.0063 1.4E-07 58.5 6.9 43 715-758 1-43 (143)
232 PF03059 NAS: Nicotianamine sy 96.5 0.023 5.1E-07 62.7 11.8 108 712-830 120-229 (276)
233 KOG3191 Predicted N6-DNA-methy 96.4 0.012 2.5E-07 61.8 8.5 80 707-800 38-117 (209)
234 PF01728 FtsJ: FtsJ-like methy 96.4 0.0042 9.2E-08 62.7 4.9 37 712-748 23-59 (181)
235 PF11968 DUF3321: Putative met 96.3 0.014 3.1E-07 62.3 8.4 90 714-834 53-152 (219)
236 COG3897 Predicted methyltransf 96.2 0.014 3E-07 61.8 7.9 107 711-837 78-185 (218)
237 COG2521 Predicted archaeal met 96.2 0.0075 1.6E-07 65.2 5.9 142 670-828 88-242 (287)
238 COG0742 N6-adenine-specific me 96.2 0.081 1.8E-06 55.6 13.0 125 695-833 24-156 (187)
239 COG0144 Sun tRNA and rRNA cyto 96.1 0.083 1.8E-06 60.1 13.7 119 703-833 147-290 (355)
240 PF07091 FmrO: Ribosomal RNA m 96.1 0.032 7E-07 60.8 9.8 108 712-835 105-212 (251)
241 KOG2352 Predicted spermine/spe 96.0 0.024 5.3E-07 66.5 9.3 103 714-831 50-162 (482)
242 COG0357 GidB Predicted S-adeno 96.0 0.022 4.8E-07 60.8 8.2 94 713-825 68-161 (215)
243 KOG2187 tRNA uracil-5-methyltr 95.8 0.014 3.1E-07 68.6 6.2 78 695-787 366-443 (534)
244 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.7 0.05 1.1E-06 59.9 9.9 120 702-833 75-221 (283)
245 COG0293 FtsJ 23S rRNA methylas 95.7 0.11 2.4E-06 55.4 11.7 109 712-843 45-172 (205)
246 TIGR00006 S-adenosyl-methyltra 95.6 0.035 7.6E-07 62.2 8.0 85 701-799 9-98 (305)
247 COG2384 Predicted SAM-dependen 95.6 0.071 1.5E-06 57.3 9.8 108 698-823 4-111 (226)
248 PRK12371 ribonuclease III; Rev 95.3 0.037 7.9E-07 59.7 6.9 69 15-95 160-232 (235)
249 PHA03103 double-strand RNA-bin 95.3 0.037 8.1E-07 57.9 6.4 40 52-92 136-175 (183)
250 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.2 0.21 4.5E-06 54.8 12.2 119 711-833 55-202 (256)
251 PHA02701 ORF020 dsRNA-binding 95.2 0.039 8.5E-07 57.6 6.2 69 15-95 107-178 (183)
252 KOG2915 tRNA(1-methyladenosine 95.1 0.13 2.9E-06 56.9 10.4 117 700-834 93-213 (314)
253 COG4262 Predicted spermidine s 95.0 0.16 3.6E-06 58.1 11.0 159 650-829 214-404 (508)
254 COG1189 Predicted rRNA methyla 94.4 0.25 5.5E-06 53.8 10.1 111 701-835 67-183 (245)
255 PF00254 FKBP_C: FKBP-type pep 94.3 0.12 2.5E-06 47.0 6.4 91 579-677 4-94 (94)
256 PF05971 Methyltransf_10: Prot 94.3 0.24 5.1E-06 55.6 10.0 100 695-806 77-190 (299)
257 PF01269 Fibrillarin: Fibrilla 93.9 0.3 6.6E-06 52.8 9.4 100 710-831 71-178 (229)
258 PF13578 Methyltransf_24: Meth 93.8 0.039 8.4E-07 50.9 2.2 98 717-829 1-102 (106)
259 PF03514 GRAS: GRAS domain fam 93.7 0.51 1.1E-05 54.2 11.6 126 702-837 100-249 (374)
260 PRK10742 putative methyltransf 93.5 0.47 1E-05 52.0 10.3 110 687-805 55-176 (250)
261 KOG4058 Uncharacterized conser 93.5 0.15 3.3E-06 52.2 6.0 92 695-799 55-146 (199)
262 PRK00102 rnc ribonuclease III; 93.0 0.2 4.3E-06 52.8 6.4 68 14-93 156-227 (229)
263 KOG2730 Methylase [General fun 92.9 0.098 2.1E-06 56.5 3.9 74 712-799 94-171 (263)
264 KOG1709 Guanidinoacetate methy 92.7 0.92 2E-05 49.2 10.7 99 711-826 100-200 (271)
265 PF14709 DND1_DSRM: double str 92.6 0.13 2.7E-06 47.0 3.7 40 54-93 31-80 (80)
266 TIGR02191 RNaseIII ribonucleas 92.3 0.27 5.9E-06 51.4 6.2 67 14-92 150-220 (220)
267 KOG3115 Methyltransferase-like 92.3 0.56 1.2E-05 50.4 8.4 69 712-786 60-128 (249)
268 cd00048 DSRM Double-stranded R 92.3 0.17 3.8E-06 42.2 3.9 67 394-497 2-68 (68)
269 PF04989 CmcI: Cephalosporin h 92.2 0.2 4.2E-06 53.5 5.0 115 704-833 24-149 (206)
270 COG0275 Predicted S-adenosylme 92.1 0.46 1E-05 53.4 7.9 86 701-799 12-102 (314)
271 cd08031 LARP_4_5_like La RNA-b 92.0 0.085 1.8E-06 48.0 1.7 73 108-202 2-74 (75)
272 KOG0544 FKBP-type peptidyl-pro 91.8 0.36 7.7E-06 46.1 5.6 70 570-640 7-76 (108)
273 cd08030 LA_like_plant La-motif 91.7 0.11 2.3E-06 48.9 2.1 86 108-203 3-90 (90)
274 smart00358 DSRM Double-strande 91.4 0.27 5.9E-06 41.2 4.2 66 394-497 1-66 (67)
275 PF03368 Dicer_dimer: Dicer di 91.2 0.34 7.4E-06 45.0 4.9 45 57-101 32-83 (90)
276 PF01795 Methyltransf_5: MraW 91.0 0.6 1.3E-05 52.7 7.5 84 702-799 10-99 (310)
277 COG0571 Rnc dsRNA-specific rib 91.0 0.45 9.7E-06 51.7 6.2 71 14-96 163-233 (235)
278 COG4301 Uncharacterized conser 90.5 2.3 4.9E-05 47.1 10.9 113 709-833 75-195 (321)
279 KOG3201 Uncharacterized conser 90.4 0.33 7.1E-06 50.5 4.4 121 703-834 20-143 (201)
280 PF14709 DND1_DSRM: double str 90.4 0.5 1.1E-05 43.2 5.1 75 393-497 2-79 (80)
281 TIGR00027 mthyl_TIGR00027 meth 89.7 14 0.00031 40.5 16.5 169 698-895 64-248 (260)
282 COG5459 Predicted rRNA methyla 89.3 0.75 1.6E-05 52.8 6.5 113 709-833 110-227 (484)
283 smart00715 LA Domain in the RN 89.1 0.22 4.7E-06 45.8 1.7 79 105-204 2-80 (80)
284 PRK12372 ribonuclease III; Rev 89.0 0.85 1.8E-05 53.2 6.7 66 17-94 152-222 (413)
285 TIGR03516 ppisom_GldI peptidyl 88.2 1.6 3.4E-05 45.5 7.5 123 543-679 49-175 (177)
286 KOG1562 Spermidine synthase [A 88.0 1.6 3.5E-05 49.2 7.8 110 711-830 120-234 (337)
287 PF02636 Methyltransf_28: Puta 87.9 1.5 3.2E-05 47.3 7.3 84 713-807 19-109 (252)
288 PF06859 Bin3: Bicoid-interact 87.8 0.25 5.5E-06 48.0 1.3 105 793-916 1-110 (110)
289 cd07323 LAM LA motif RNA-bindi 86.8 0.29 6.2E-06 44.4 1.1 74 108-203 2-75 (75)
290 PF07757 AdoMet_MTase: Predict 86.8 0.45 9.8E-06 46.4 2.4 31 712-745 58-88 (112)
291 PF06962 rRNA_methylase: Putat 85.7 4.4 9.5E-05 41.1 8.8 76 739-828 1-88 (140)
292 KOG2798 Putative trehalase [Ca 85.3 5.7 0.00012 45.4 10.2 155 712-896 150-336 (369)
293 KOG1122 tRNA and rRNA cytosine 85.3 3 6.6E-05 48.9 8.4 114 707-833 236-373 (460)
294 PF11599 AviRa: RRNA methyltra 85.0 1.2 2.6E-05 48.3 4.6 136 695-830 34-213 (246)
295 COG3510 CmcI Cephalosporin hyd 83.9 4.9 0.00011 43.2 8.5 112 703-833 60-182 (237)
296 cd08034 LARP_1_2 La RNA-bindin 83.5 0.49 1.1E-05 42.9 0.9 72 108-203 2-73 (73)
297 cd08029 LA_like_fungal La-moti 83.4 0.65 1.4E-05 42.4 1.7 75 108-203 2-76 (76)
298 cd00315 Cyt_C5_DNA_methylase C 82.9 2.4 5.3E-05 46.5 6.2 66 715-800 2-69 (275)
299 KOG4589 Cell division protein 82.9 1.3 2.9E-05 47.2 3.9 35 711-745 68-102 (232)
300 cd08033 LARP_6 La RNA-binding 82.4 0.56 1.2E-05 42.9 0.9 76 108-203 2-77 (77)
301 PRK10737 FKBP-type peptidyl-pr 82.2 2 4.3E-05 45.7 4.9 60 581-647 4-66 (196)
302 PF04445 SAM_MT: Putative SAM- 81.9 6 0.00013 43.3 8.5 108 691-805 45-163 (234)
303 COG1889 NOP1 Fibrillarin-like 81.9 11 0.00023 40.9 10.2 102 710-830 74-179 (231)
304 KOG2793 Putative N2,N2-dimethy 81.5 8.4 0.00018 42.5 9.5 113 712-835 86-203 (248)
305 cd08038 LARP_2 La RNA-binding 81.1 0.8 1.7E-05 41.7 1.4 69 108-198 2-70 (73)
306 COG3315 O-Methyltransferase in 79.5 15 0.00031 41.5 10.8 123 697-832 74-210 (297)
307 COG4798 Predicted methyltransf 78.2 3.5 7.6E-05 44.3 5.1 117 707-832 43-167 (238)
308 KOG1501 Arginine N-methyltrans 78.0 4.2 9E-05 48.1 6.1 99 714-825 68-168 (636)
309 PRK11524 putative methyltransf 77.9 5.4 0.00012 44.0 6.8 45 711-758 207-251 (284)
310 PF00035 dsrm: Double-stranded 77.7 3 6.6E-05 35.1 3.8 67 394-497 1-67 (67)
311 cd08035 LARP_4 La RNA-binding 77.3 1.8 3.8E-05 39.7 2.4 70 108-199 2-71 (75)
312 PF01555 N6_N4_Mtase: DNA meth 77.1 6.5 0.00014 40.0 6.7 57 695-755 175-231 (231)
313 PRK14718 ribonuclease III; Pro 76.8 4.8 0.00011 47.7 6.3 66 16-93 151-221 (467)
314 PF02254 TrkA_N: TrkA-N domain 76.7 5.7 0.00012 37.0 5.7 98 721-842 4-107 (116)
315 PF14954 LIX1: Limb expression 76.1 2.4 5.2E-05 45.7 3.3 41 50-91 52-94 (252)
316 KOG2651 rRNA adenine N-6-methy 75.6 6.9 0.00015 45.7 6.9 54 700-755 140-194 (476)
317 cd08032 LARP_7 La RNA-binding 75.6 2.3 5E-05 39.5 2.7 81 103-203 2-82 (82)
318 KOG3924 Putative protein methy 74.7 8.2 0.00018 45.2 7.3 117 704-830 184-306 (419)
319 PHA01634 hypothetical protein 74.2 6.6 0.00014 39.9 5.6 46 711-758 27-72 (156)
320 PF01861 DUF43: Protein of unk 74.1 20 0.00044 39.5 9.7 117 686-824 19-140 (243)
321 PF02005 TRM: N2,N2-dimethylgu 73.3 9.4 0.0002 44.3 7.5 125 689-830 18-153 (377)
322 PRK13699 putative methylase; P 73.0 9.3 0.0002 41.1 6.9 46 711-759 162-207 (227)
323 COG0286 HsdM Type I restrictio 72.5 8.5 0.00019 46.0 7.1 88 701-800 175-271 (489)
324 KOG1596 Fibrillarin and relate 72.0 13 0.00027 41.4 7.5 102 710-833 154-263 (317)
325 PRK15095 FKBP-type peptidyl-pr 71.4 6.9 0.00015 40.0 5.2 61 580-647 5-69 (156)
326 COG1064 AdhP Zn-dependent alco 71.2 14 0.0003 42.6 8.0 95 709-832 163-261 (339)
327 COG1867 TRM1 N2,N2-dimethylgua 70.5 21 0.00046 41.6 9.2 126 686-830 23-153 (380)
328 cd08028 LARP_3 La RNA-binding 69.7 2.9 6.3E-05 38.8 1.9 79 105-203 3-82 (82)
329 COG1063 Tdh Threonine dehydrog 69.2 38 0.00083 38.5 11.0 128 683-835 139-274 (350)
330 KOG2671 Putative RNA methylase 68.7 2.8 6E-05 48.2 1.8 86 705-799 201-290 (421)
331 cd08283 FDH_like_1 Glutathione 66.5 39 0.00084 38.4 10.4 50 706-756 178-228 (386)
332 PF03141 Methyltransf_29: Puta 65.7 9.8 0.00021 45.7 5.5 115 695-829 344-465 (506)
333 PRK09424 pntA NAD(P) transhydr 65.4 35 0.00076 41.3 10.2 43 711-755 163-206 (509)
334 COG4017 Uncharacterized protei 64.3 28 0.0006 37.7 8.0 155 696-889 28-192 (254)
335 TIGR00675 dcm DNA-methyltransf 63.9 20 0.00043 40.4 7.3 64 716-799 1-65 (315)
336 PF11312 DUF3115: Protein of u 62.5 12 0.00027 42.5 5.4 119 714-834 88-246 (315)
337 cd08036 LARP_5 La RNA-binding 62.3 1.3 2.8E-05 40.6 -1.8 70 108-199 2-71 (75)
338 TIGR00561 pntA NAD(P) transhyd 61.9 22 0.00047 43.1 7.6 110 712-828 163-280 (511)
339 PF03269 DUF268: Caenorhabditi 61.7 5.8 0.00013 41.5 2.4 102 713-835 2-115 (177)
340 PLN02668 indole-3-acetate carb 61.6 58 0.0013 38.3 10.7 95 713-807 64-176 (386)
341 PF11899 DUF3419: Protein of u 58.3 14 0.00029 43.1 4.9 57 773-829 273-332 (380)
342 PF04072 LCM: Leucine carboxyl 57.8 58 0.0013 33.5 9.0 110 698-818 59-182 (183)
343 cd08037 LARP_1 La RNA-binding 56.8 3 6.4E-05 38.1 -0.5 69 108-198 2-70 (73)
344 KOG2920 Predicted methyltransf 55.7 8.5 0.00018 43.2 2.7 39 711-751 115-153 (282)
345 COG1255 Uncharacterized protei 55.5 59 0.0013 32.7 7.9 92 710-833 11-104 (129)
346 COG1565 Uncharacterized conser 54.2 26 0.00057 40.8 6.2 47 712-758 77-130 (370)
347 PF06690 DUF1188: Protein of u 53.9 1.2E+02 0.0027 33.7 10.8 107 696-837 25-132 (252)
348 PF02737 3HCDH_N: 3-hydroxyacy 53.4 2.8E+02 0.0061 28.8 14.3 158 715-894 1-176 (180)
349 COG1047 SlpA FKBP-type peptidy 53.2 23 0.0005 37.3 5.2 61 581-648 4-68 (174)
350 PRK07819 3-hydroxybutyryl-CoA 53.0 33 0.00071 38.0 6.7 45 714-761 6-52 (286)
351 PRK07066 3-hydroxybutyryl-CoA 52.9 1.8E+02 0.0039 33.3 12.6 159 713-892 7-179 (321)
352 PRK01747 mnmC bifunctional tRN 52.6 65 0.0014 39.7 9.7 119 711-829 56-203 (662)
353 PRK09880 L-idonate 5-dehydroge 52.4 82 0.0018 35.0 9.7 45 710-755 167-212 (343)
354 PF03492 Methyltransf_7: SAM d 50.4 58 0.0012 37.3 8.2 90 712-807 16-121 (334)
355 PF00145 DNA_methylase: C-5 cy 50.0 33 0.00072 37.1 6.1 64 715-799 2-67 (335)
356 cd08254 hydroxyacyl_CoA_DH 6-h 50.0 87 0.0019 33.9 9.2 45 709-755 162-207 (338)
357 PRK07417 arogenate dehydrogena 49.1 1.1E+02 0.0024 33.5 9.9 85 715-829 2-88 (279)
358 KOG1855 Predicted RNA-binding 48.5 12 0.00026 44.0 2.5 94 102-215 136-229 (484)
359 PRK10458 DNA cytosine methylas 47.7 80 0.0017 38.0 9.1 60 695-756 64-129 (467)
360 TIGR00872 gnd_rel 6-phosphoglu 47.7 71 0.0015 35.5 8.3 93 715-835 2-96 (298)
361 KOG2198 tRNA cytosine-5-methyl 46.1 1.5E+02 0.0033 34.9 10.6 112 709-833 152-298 (375)
362 KOG0822 Protein kinase inhibit 42.6 67 0.0015 39.4 7.3 105 713-830 368-476 (649)
363 cd08230 glucose_DH Glucose deh 42.1 1.5E+02 0.0032 33.1 9.7 43 711-755 171-217 (355)
364 COG0569 TrkA K+ transport syst 41.7 2.1E+02 0.0045 30.9 10.4 105 714-843 1-112 (225)
365 PLN02545 3-hydroxybutyryl-CoA 40.6 1.4E+02 0.003 32.9 9.1 42 714-758 5-48 (295)
366 PRK09496 trkA potassium transp 40.0 5.1E+02 0.011 29.9 14.0 105 712-841 230-340 (453)
367 PF07279 DUF1442: Protein of u 39.7 1.9E+02 0.0042 31.7 9.6 86 702-799 31-121 (218)
368 PRK03562 glutathione-regulated 39.2 1.4E+02 0.003 37.1 9.6 97 713-836 400-503 (621)
369 PRK10902 FKBP-type peptidyl-pr 38.6 88 0.0019 35.0 7.1 98 574-683 155-252 (269)
370 PRK03659 glutathione-regulated 37.9 1.3E+02 0.0027 37.2 8.9 101 714-841 401-508 (601)
371 COG5379 BtaA S-adenosylmethion 37.8 62 0.0014 37.1 5.8 59 774-832 306-367 (414)
372 COG2933 Predicted SAM-dependen 37.7 93 0.002 35.3 7.0 87 711-825 210-296 (358)
373 PRK11570 peptidyl-prolyl cis-t 37.5 54 0.0012 35.1 5.2 64 577-649 114-181 (206)
374 PRK05808 3-hydroxybutyryl-CoA 36.1 1.4E+02 0.0031 32.6 8.3 163 714-896 4-182 (282)
375 TIGR00518 alaDH alanine dehydr 35.8 74 0.0016 36.8 6.3 42 712-755 166-208 (370)
376 KOG1098 Putative SAM-dependent 35.3 44 0.00095 41.5 4.4 36 712-747 44-79 (780)
377 cd08232 idonate-5-DH L-idonate 34.6 1.4E+02 0.0031 32.6 8.0 47 708-755 161-208 (339)
378 PF05050 Methyltransf_21: Meth 34.4 53 0.0012 31.7 4.2 39 718-756 1-42 (167)
379 PRK11154 fadJ multifunctional 34.1 3.1E+02 0.0068 34.6 11.7 163 713-895 309-488 (708)
380 cd01080 NAD_bind_m-THF_DH_Cycl 34.1 1.4E+02 0.0031 31.0 7.4 55 690-747 21-78 (168)
381 PRK08293 3-hydroxybutyryl-CoA 34.0 4.8E+02 0.01 28.7 11.9 41 714-757 4-46 (287)
382 KOG2539 Mitochondrial/chloropl 33.1 1.5E+02 0.0033 35.9 8.2 112 711-832 199-316 (491)
383 COG3129 Predicted SAM-dependen 32.6 1.4E+02 0.003 33.5 7.2 83 712-807 78-167 (292)
384 PRK11730 fadB multifunctional 31.4 3.8E+02 0.0082 33.9 11.8 162 714-895 314-491 (715)
385 PF03686 UPF0146: Uncharacteri 31.1 53 0.0012 33.1 3.6 94 710-835 11-106 (127)
386 PRK06035 3-hydroxyacyl-CoA deh 30.3 2.2E+02 0.0047 31.4 8.5 42 714-758 4-47 (291)
387 COG0686 Ald Alanine dehydrogen 29.2 1.9E+02 0.0041 33.7 7.8 101 712-832 167-268 (371)
388 PF11899 DUF3419: Protein of u 29.0 1.1E+02 0.0024 35.9 6.2 47 705-754 28-74 (380)
389 KOG0552 FKBP-type peptidyl-pro 28.7 1.5E+02 0.0032 32.7 6.7 109 560-679 116-225 (226)
390 cd00401 AdoHcyase S-adenosyl-L 28.6 1.8E+02 0.0039 34.6 7.9 43 711-755 200-243 (413)
391 TIGR02441 fa_ox_alpha_mit fatt 27.9 7.3E+02 0.016 31.7 13.4 163 713-895 335-513 (737)
392 PF09263 PEX-2N: Peroxisome bi 27.2 40 0.00086 31.9 1.8 18 256-273 66-83 (87)
393 cd01065 NAD_bind_Shikimate_DH 27.2 2.4E+02 0.0053 27.4 7.5 44 711-756 17-62 (155)
394 PRK10669 putative cation:proto 26.6 3.1E+02 0.0067 33.3 9.6 92 714-833 418-517 (558)
395 PRK09496 trkA potassium transp 26.6 4.7E+02 0.01 30.3 10.8 92 715-834 2-102 (453)
396 PRK08217 fabG 3-ketoacyl-(acyl 26.5 2.5E+02 0.0054 29.0 7.8 75 712-802 4-91 (253)
397 TIGR00497 hsdM type I restrict 26.5 6.1E+02 0.013 30.6 11.9 56 702-757 205-265 (501)
398 COG1568 Predicted methyltransf 26.4 41 0.0009 38.2 2.1 99 684-799 125-227 (354)
399 COG0270 Dcm Site-specific DNA 26.3 1.4E+02 0.0031 33.8 6.4 69 713-800 3-74 (328)
400 PTZ00357 methyltransferase; Pr 26.2 2.2E+02 0.0048 36.3 8.2 76 715-799 703-798 (1072)
401 PRK08306 dipicolinate synthase 26.1 2.2E+02 0.0047 32.0 7.7 86 712-829 151-238 (296)
402 COG5379 BtaA S-adenosylmethion 26.1 1.7E+02 0.0037 33.8 6.7 49 708-759 59-107 (414)
403 TIGR02437 FadB fatty oxidation 24.4 6E+02 0.013 32.3 11.8 164 712-895 312-491 (714)
404 PRK12921 2-dehydropantoate 2-r 24.3 3.8E+02 0.0082 29.2 9.0 35 715-753 2-38 (305)
405 COG0287 TyrA Prephenate dehydr 24.2 1.8E+02 0.0039 32.6 6.6 92 714-831 4-97 (279)
406 KOG0024 Sorbitol dehydrogenase 24.0 1.8E+02 0.0039 34.0 6.5 93 660-755 117-212 (354)
407 TIGR02440 FadJ fatty oxidation 23.6 5.4E+02 0.012 32.6 11.1 162 714-895 305-483 (699)
408 PF02153 PDH: Prephenate dehyd 23.5 1.4E+02 0.0029 32.7 5.4 77 727-831 2-78 (258)
409 TIGR02822 adh_fam_2 zinc-bindi 23.3 4.5E+02 0.0098 29.3 9.5 46 708-755 161-207 (329)
410 PRK08703 short chain dehydroge 23.2 3.5E+02 0.0077 28.0 8.2 44 711-757 4-50 (239)
411 PF05206 TRM13: Methyltransfer 22.9 1.1E+02 0.0024 34.0 4.6 36 712-747 18-57 (259)
412 PRK07502 cyclohexadienyl dehyd 22.6 2.2E+02 0.0047 31.6 6.8 40 714-754 7-48 (307)
413 PRK05854 short chain dehydroge 22.5 4.1E+02 0.0089 29.4 9.0 78 711-802 12-102 (313)
414 KOG1099 SAM-dependent methyltr 22.3 1.3E+02 0.0029 33.6 4.8 95 712-829 41-160 (294)
415 PF12242 Eno-Rase_NADH_b: NAD( 21.4 1.4E+02 0.0031 27.9 4.1 48 699-746 25-73 (78)
416 PRK08213 gluconate 5-dehydroge 21.3 4.3E+02 0.0093 27.7 8.5 75 711-802 10-98 (259)
417 PF10354 DUF2431: Domain of un 21.3 5.3E+02 0.011 26.7 8.8 101 719-833 3-127 (166)
418 PRK12829 short chain dehydroge 21.0 4.6E+02 0.0099 27.4 8.5 77 706-801 4-94 (264)
419 PRK07530 3-hydroxybutyryl-CoA 20.8 3E+02 0.0064 30.3 7.4 43 713-758 4-48 (292)
420 KOG2777 tRNA-specific adenosin 20.6 2E+02 0.0042 35.5 6.3 76 51-129 113-196 (542)
421 PRK09260 3-hydroxybutyryl-CoA 20.6 1.1E+03 0.025 25.8 13.4 42 714-758 2-45 (288)
422 PRK07890 short chain dehydroge 20.5 3.7E+02 0.008 28.0 7.7 75 712-802 4-91 (258)
423 COG0863 DNA modification methy 20.4 2.6E+02 0.0057 30.2 6.8 47 710-759 220-266 (302)
424 PRK08339 short chain dehydroge 20.3 3.9E+02 0.0085 28.6 8.0 75 712-801 7-93 (263)
No 1
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=100.00 E-value=6.5e-42 Score=374.91 Aligned_cols=382 Identities=28% Similarity=0.321 Sum_probs=323.1
Q ss_pred cceEEeeecCccccccccCC--CCCccccccccCCCCCccccccccccccceeeeeccceeecCCccccccchhhhhhhh
Q 002226 281 SEMRLYFAAPKSYLLDLSSD--LPNVEEVVDFEGSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRML 358 (951)
Q Consensus 281 ~e~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~ras~~~~~~i~g~ai~a~~g~~~~~~~l~~~~~~~~~~~r~~ 358 (951)
.|| |...|+ +.+.. +.....-.|+..++ +||+|.|||+|+||+|+|+|||+||
T Consensus 6 ~~c--~~~~~~----n~~e~~~~~~~~~~~~l~~~r-~r~~fk~~qd~~~~~~~a~~g~~w~------------------ 60 (404)
T KOG1045|consen 6 DEC--YSDIPK----NSLEAALLTPIDFSPPLAKQR-ARASFKNLQDIHGDKILADVGCGWR------------------ 60 (404)
T ss_pred CcC--cccCCc----chhhhccccccccccHHHHHh-hhhhhhcccCCCcchhhhhcCCccc------------------
Confidence 367 888888 22222 23344447888899 9999999999999999999999996
Q ss_pred hccCCCcccccchhhhhhhcCCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccc
Q 002226 359 IHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESA 438 (951)
Q Consensus 359 ~~~~p~g~yk~sr~~~~~a~lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (951)
|.+|+|+||.||++++.|.||..+| +.+|||++||.+||+||||++|.+|++....++++.++++.|+.+++++....
T Consensus 61 -~~s~n~~~k~s~~~~~~agl~f~~~-k~~~r~~~~~~~l~dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ie 138 (404)
T KOG1045|consen 61 -GSSYNGIYKESRTIEILAGLDFNET-KSVWRGPSVRPILGDFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIE 138 (404)
T ss_pred -ccccccccccchhhHHHcCCCchhh-hhhhcCcchhHHHHHHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhh
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999776544
Q ss_pred cccccccCCCcccCCCc---eeEEEEEeeccCCcccccCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCcccccccc
Q 002226 439 ETGKECTSGGGTAASDN---VRCEVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLV 515 (951)
Q Consensus 439 ~~~~~~~~~~~~~~~~~---f~c~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~~~~~~~~~~~~~ 515 (951)
..+++. ...-.++ |+|+++|..+.+++.++|++.+||.+.++||||++++++.|..+-|++ +.+..+
T Consensus 139 h~ds~~----~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~kf~~l~p~~~~~~s~h~feW~r~eFa~------w~~~vd 208 (404)
T KOG1045|consen 139 HVDSEP----LLSIPELVFGFLCPVKIVKSTPNLVFNCIFRKFNTLLPSAIRRHSDHKFEWPRKEFAD------WALYVD 208 (404)
T ss_pred cccchh----hhccchhhcccccceEEEEeCCCccccchhhhhcccCchhhhccccccccccHHHHHH------HHhhhh
Confidence 444221 1111222 999999999999999999999999999999999999999999999999 666666
Q ss_pred CcCCeeeccchhhhhcccccchhccccccccccccccccccccccCCCCceeeeccCCCCCCccCCCCceeEEEEEEEEe
Q 002226 516 GALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLLQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLV 595 (951)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gs~~~i~y~~~l~ 595 (951)
+..|.....-+-.-.....+. +. .+..+++++.| +||+.+-|+|+..+-
T Consensus 209 ~~y~~~~~~~~~vg~pp~~~e-------------------~v---~~~~qirIfs~---------t~g~~~qi~~~~~~~ 257 (404)
T KOG1045|consen 209 DRYDMYVVEHTGVGNPPKLVE-------------------NV---GLMPQIRIFSI---------TNGSYTQICYSEQSK 257 (404)
T ss_pred hcCcceEEeecccCCchhhhc-------------------cc---cccceeEEEEe---------cCCcEEEEeeccccc
Confidence 666655444332222211111 11 15677888888 999999999999998
Q ss_pred ec-ccc--hhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCC-chhhhhhhccCcccchhcccccccccc
Q 002226 596 IE-GET--MKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP-PQELILAAADDSARTFSLLSSRACCLE 671 (951)
Q Consensus 596 ~~-~~~--~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~-~~~l~lAa~~~~~~DiSlL~~d~~~LE 671 (951)
+. ++| .+-..||+++++|++|.+.+..+++..|+||++|+-++|-+..+ +.++++.+......+.+.|..-.+ ++
T Consensus 258 ~~~~~~~f~~s~~es~e~~e~~v~~~~~~q~~~~~v~q~~~g~k~~f~~s~~~~~~l~~~~~~~~~~~~s~l~~v~~-~~ 336 (404)
T KOG1045|consen 258 VNADKHKFGKSRKESNEEIEKLVGRFEMNQHLEPEVQQMLVGYKAQFGASQPAAERLQVTLNTPTPCELSVLEEVGH-LK 336 (404)
T ss_pred CCcchhccccCchHHhhhhhhhhccccccccccHHHHHHHHHHHHHhhcCcccccceeeeccCCcccccchhhhhcc-ch
Confidence 77 333 33455699999999999999999999999999999999999999 677799999999999998888888 99
Q ss_pred eeeeecccCCChhhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHh
Q 002226 672 YHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLL 731 (951)
Q Consensus 672 yyI~LL~v~ep~EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LA 731 (951)
+.+-++.+.-+.+.+++..++.|+...+|..+...+.......++|+-|||.|.......
T Consensus 337 ~~i~ll~~~~~~~~~~el~~~~~~~~~~~~~~~~k~s~~ssa~~~l~~~~~s~v~~d~~~ 396 (404)
T KOG1045|consen 337 ERIGLLLVAGNLEKEIELDFLKPSLKKQRLEYALKHSRSSSADTLLLFSCGSGVLFDLTL 396 (404)
T ss_pred hccccceeccCcceeeehhhccchhhhhchhhHhhhhHHhhhhhhhhhccccceehhhcc
Confidence 999999999999999999999999999999999999988888999999999999876443
No 2
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.71 E-value=1.9e-17 Score=174.71 Aligned_cols=176 Identities=22% Similarity=0.302 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 696 LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 696 L~~QR~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
+.+-|..++.+.+.. ..+.+|||||||-|.++..||+.| ..|+|+|+++++|+.|+.... .
T Consensus 40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~-------------e 103 (243)
T COG2227 40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHAL-------------E 103 (243)
T ss_pred eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhh-------------h
Confidence 345677788777764 688999999999999999999999 899999999999999976432 2
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCC
Q 002226 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDD 851 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eY 851 (951)
....+++.+..++++....++||+|+|.+||||++++. .|.+.+.+++||| .++++|+|..+.+++..+.+ + +|
T Consensus 104 ~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~--a-e~ 178 (243)
T COG2227 104 SGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG--A-EY 178 (243)
T ss_pred ccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH--H-HH
Confidence 23468899999999887778999999999999999554 3667899999999 99999999998887765533 1 22
Q ss_pred CchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCC
Q 002226 852 PDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGGSG 901 (951)
Q Consensus 852 Pde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsV-Ef~GVG~~p 901 (951)
. +.+.+...++...+..++|+..|+.+ .|+.+ ...|+-.-|
T Consensus 179 ----v-l~~vP~gTH~~~k~irp~El~~~~~~----~~~~~~~~~g~~y~p 220 (243)
T COG2227 179 ----V-LRIVPKGTHDYRKFIKPAELIRWLLG----ANLKIIDRKGLTYNP 220 (243)
T ss_pred ----H-HHhcCCcchhHHHhcCHHHHHHhccc----CCceEEeecceEecc
Confidence 1 23677778888888999999988654 34443 566666533
No 3
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=99.70 E-value=4.1e-18 Score=188.39 Aligned_cols=243 Identities=24% Similarity=0.337 Sum_probs=191.1
Q ss_pred hhhhhhcCCChhHHHH-HHHHHHHhhcCCCCEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhh
Q 002226 685 DRMEQALFSPPLSKQR-VEYALQHIKESCATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 761 (951)
Q Consensus 685 eRye~~~F~PPL~~QR-~e~VldlL~~~k~krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~l 761 (951)
.+++...|+||++.+| +.........++++.+.|+|||.-. +...+... .+.....|+|+++..+.+....+...+
T Consensus 20 ~~~~~~~~~~~l~~~r~r~~fk~~qd~~~~~~~a~~g~~w~~~s~n~~~k~s-~~~~~~agl~f~~~k~~~r~~~~~~~l 98 (404)
T KOG1045|consen 20 ALLTPIDFSPPLAKQRARASFKNLQDIHGDKILADVGCGWRGSSYNGIYKES-RTIEILAGLDFNETKSVWRGPSVRPIL 98 (404)
T ss_pred ccccccccccHHHHHhhhhhhhcccCCCcchhhhhcCCcccccccccccccc-hhhHHHcCCCchhhhhhhcCcchhHHH
Confidence 4467888999999999 4445555566788999999999842 22222222 234567899999986665544333333
Q ss_pred hcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002226 762 SKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 841 (951)
Q Consensus 762 s~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~ 841 (951)
. +...++..+..|..+.|++.+.......+|.+++++.++|++.++...+.+.+++.+.|..++++|||.+||..+.
T Consensus 99 ~---dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ieh~ds~~~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~ 175 (404)
T KOG1045|consen 99 G---DFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIEHVDSEPLLSIPELVFGFLCPVKIVKSTPNLVFNCIFR 175 (404)
T ss_pred H---HHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhhcccchhhhccchhhcccccceEEEEeCCCccccchhh
Confidence 2 2244567788999999999887766778999999999999999999999999999999999999999999999888
Q ss_pred hhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcC-cEEEEEeecCCCCC--CCCccceeeeeecCC
Q 002226 842 KSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHN-YSVEFSGVGGSGDR--EPGFASQIAVFRSRT 918 (951)
Q Consensus 842 ~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~G-YsVEf~GVG~~p~g--e~G~~TQIAVFrR~~ 918 (951)
++.. -. +..-.||.+|+|+|++.+|.+|+-.+..+|. |.+++.|+|.+++. +.|+++||.||+++.
T Consensus 176 kf~~-------l~----p~~~~~~s~h~feW~r~eFa~w~~~vd~~y~~~~~~~~~vg~pp~~~e~v~~~~qirIfs~t~ 244 (404)
T KOG1045|consen 176 KFNT-------LL----PSAIRRHSDHKFEWPRKEFADWALYVDDRYDMYVVEHTGVGNPPKLVENVGLMPQIRIFSITN 244 (404)
T ss_pred hhcc-------cC----chhhhccccccccccHHHHHHHHhhhhhcCcceEEeecccCCchhhhccccccceeEEEEecC
Confidence 7743 11 1233459999999999999999999999995 67778899998865 689999999999999
Q ss_pred CCCCcccccCCCCccceeEEEEec
Q 002226 919 PPEEDDLLKDGDSAHHYKVIWEWD 942 (951)
Q Consensus 919 ~~~~~~~~~~~~~~~~Yk~v~~w~ 942 (951)
+..+..+.+++.+-++++......
T Consensus 245 g~~~qi~~~~~~~~~~~~~~f~~s 268 (404)
T KOG1045|consen 245 GSYTQICYSEQSKVNADKHKFGKS 268 (404)
T ss_pred CcEEEEeecccccCCcchhccccC
Confidence 999999888887778887665543
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.70 E-value=4.1e-16 Score=171.76 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhh-----------cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccc
Q 002226 698 KQRVEYALQHIK-----------ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 766 (951)
Q Consensus 698 ~QR~e~VldlL~-----------~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~ 766 (951)
..|+.++.+.+. ..++.+|||||||+|.++..|++.+ .+|+|||++++|++.|+++...
T Consensus 106 ~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~------- 175 (322)
T PLN02396 106 PTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADM------- 175 (322)
T ss_pred hHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------
Confidence 447676655431 1345699999999999999999876 7999999999999999875421
Q ss_pred cCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002226 767 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 845 (951)
Q Consensus 767 ~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~ 845 (951)
.....++++.++++.++++.++.||+|+|.+||||+.++. .+.+++.++|||| .++++++|.....++..+..
T Consensus 176 ----~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~ 249 (322)
T PLN02396 176 ----DPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVG 249 (322)
T ss_pred ----cCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh
Confidence 0112479999999999988778999999999999999443 4556799999999 99999999876554432211
Q ss_pred CccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCC
Q 002226 846 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGGSG 901 (951)
Q Consensus 846 ~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsV-Ef~GVG~~p 901 (951)
.+|- ..+.+...+.+..+++++++.. ++.++||.+ +..|+-..|
T Consensus 250 ---~eyi-----~~~lp~gth~~~~f~tp~eL~~----lL~~aGf~i~~~~G~~~~p 294 (322)
T PLN02396 250 ---AEYI-----LRWLPKGTHQWSSFVTPEELSM----ILQRASVDVKEMAGFVYNP 294 (322)
T ss_pred ---HHHH-----HhcCCCCCcCccCCCCHHHHHH----HHHHcCCeEEEEeeeEEcC
Confidence 0110 1122333333444689999994 567789988 567776644
No 5
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=2.9e-14 Score=150.69 Aligned_cols=190 Identities=14% Similarity=0.184 Sum_probs=124.8
Q ss_pred hhhhhhhcCCChhHHHHHHH-------HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002226 684 EDRMEQALFSPPLSKQRVEY-------ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 684 EeRye~~~F~PPL~~QR~e~-------VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr 756 (951)
.++|....|.-+...-|+.. +++.+. ..+.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|+++
T Consensus 10 a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~ 85 (255)
T PRK11036 10 AEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQA 85 (255)
T ss_pred HHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHH
Confidence 35555555555544444443 333333 356799999999999999999987 7999999999999999887
Q ss_pred HHhhhhcccccCCCCCCCccEEEEEccccccC-CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 757 IHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 757 Lsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.... +...+++++++|+.+++ ...++||+|+|..+++|+.+ +...+ +++.++|||| .+++..+|.
T Consensus 86 ~~~~-----------g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~-~~~~l-~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 86 AEAK-----------GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVAD-PKSVL-QTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHhc-----------CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCC-HHHHH-HHHHHHcCCCeEEEEEEECc
Confidence 6421 22357999999998874 45678999999999999984 43444 5699999999 777777876
Q ss_pred chhHHHHhhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002226 835 EYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 898 (951)
Q Consensus 835 EfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG 898 (951)
+...+-..+.+ .++....+......+.....+.++++++.+| +...||.++ ..|++
T Consensus 153 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~----l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 153 NGLLMHNMVAG----NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQW----LEEAGWQIMGKTGVR 209 (255)
T ss_pred cHHHHHHHHcc----ChHHHHhcCccccccCCCCCCCCCHHHHHHH----HHHCCCeEeeeeeEE
Confidence 53322111110 1110000000000111122345799999976 457799885 66665
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=9.5e-15 Score=155.11 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
.++..-.+.+.+.+...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.||+.|+++... .+.
T Consensus 34 g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~------------~~~ 100 (238)
T COG2226 34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK------------KGV 100 (238)
T ss_pred cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc------------cCc
Confidence 44455455566665555899999999999999999999874 68999999999999999998652 223
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
.+++|++||++++|+++++||+|++.+.|++++ +....+ ++++|+||||
T Consensus 101 ~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~-d~~~aL-~E~~RVlKpg 149 (238)
T COG2226 101 QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT-DIDKAL-KEMYRVLKPG 149 (238)
T ss_pred cceEEEEechhhCCCCCCccCEEEeeehhhcCC-CHHHHH-HHHHHhhcCC
Confidence 349999999999999999999999999999999 544555 5699999999
No 7
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=9.5e-15 Score=156.06 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=117.1
Q ss_pred hhhhccCcccchhcccccccccceeeeecccCC-----Chh--------hhhhhhcCCChhHHHHHHHHHHHhhcCCCCE
Q 002226 649 ILAAADDSARTFSLLSSRACCLEYHITLLRVTE-----PPE--------DRMEQALFSPPLSKQRVEYALQHIKESCATT 715 (951)
Q Consensus 649 ~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e-----p~E--------eRye~~~F~PPL~~QR~e~VldlL~~~k~kr 715 (951)
-|.|.++|++|++ .++|+++++... |.+ .++....+|.|+...-.+.+.+.+. ....+
T Consensus 18 ~~~C~~~h~fd~a--------~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~ 88 (272)
T PRK11088 18 SWICPQNHQFDCA--------KEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLD-EKATA 88 (272)
T ss_pred EEEcCCCCCCccc--------cCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcC-CCCCe
Confidence 4899999999999 999999996322 221 2244566777877765555555543 35578
Q ss_pred EEEEcCccchhHHHHhcCCCC--CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCC
Q 002226 716 LVDFGCGSGSLLDSLLDYPTA--LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 793 (951)
Q Consensus 716 VLDIGCGeG~ll~~LAk~g~~--~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~s 793 (951)
|||+|||+|.++..+++..+. ...++|+|+|+.|++.|+++. .++.+.++|+.++|+.+++
T Consensus 89 vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRLPFADQS 151 (272)
T ss_pred EEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccCCCcCCc
Confidence 999999999999988865421 137999999999999997642 3688999999999999999
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002226 794 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 837 (951)
Q Consensus 794 FDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN 837 (951)
||+|++...-. ..+++.|+|||| .+++.+|+..+.
T Consensus 152 fD~I~~~~~~~---------~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 152 LDAIIRIYAPC---------KAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred eeEEEEecCCC---------CHHHHHhhccCCCEEEEEeCCCcch
Confidence 99999876511 124689999998 888888886644
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=8.2e-15 Score=154.77 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+|+.||+.|++++.. .+..+|+++++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~------------~~~~~i~~v~~ 105 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR------------EGLQNIEFVQG 105 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH------------TT--SEEEEE-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh------------hCCCCeeEEEc
Confidence 456666677889999999999999999988754567999999999999999988753 22348999999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
|++++|+++++||+|+|.+.|++++ |....+ +++.|+|||| .++|
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~-d~~~~l-~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFP-DRERAL-REMYRVLKPGGRLVI 151 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-S-SHHHHH-HHHHHHEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhC-CHHHHH-HHHHHHcCCCeEEEE
Confidence 9999999999999999999999999 444454 5799999999 4443
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=4.8e-14 Score=150.59 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+|++|++.|+++..... .....++++.++|
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---------~~~~~~i~~~~~d 135 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---------KSCYKNIEWIEGD 135 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---------hccCCCeEEEEcc
Confidence 3445555677899999999999999888764344699999999999999987643110 1123579999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+.++|+++++||+|++..+++|++ +....+ +++.|+|||| .+++.+...
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~-d~~~~l-~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVV-DRLKAM-QEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCC-CHHHHH-HHHHHHcCcCcEEEEEECCC
Confidence 999999999999999999999998 444444 5799999999 666665543
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=3.4e-14 Score=136.31 Aligned_cols=143 Identities=22% Similarity=0.338 Sum_probs=103.2
Q ss_pred HHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 703 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 703 ~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
.+..+.. ..+.++|||||||.|.++..|++.+ .+++|+|+++.+++. . ++....
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~--~--------------------~~~~~~ 66 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK--R--------------------NVVFDN 66 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH--T--------------------TSEEEE
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh--h--------------------hhhhhh
Confidence 3434443 4577899999999999999998887 699999999999988 1 112222
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch-h-HHHHhhccCccCCCCchhhhh
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY-N-AILQKSSSTIQEDDPDEKTQL 858 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf-N-~lf~~L~~~~~~eYPde~~~~ 858 (951)
.+....+...++||+|+|..+|||++ +.. .+++.+.++|||| .+++++|+... . ..+..
T Consensus 67 ~~~~~~~~~~~~fD~i~~~~~l~~~~-d~~-~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~---------------- 128 (161)
T PF13489_consen 67 FDAQDPPFPDGSFDLIICNDVLEHLP-DPE-EFLKELSRLLKPGGYLVISDPNRDDPSPRSFLK---------------- 128 (161)
T ss_dssp EECHTHHCHSSSEEEEEEESSGGGSS-HHH-HHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHH----------------
T ss_pred hhhhhhhccccchhhHhhHHHHhhcc-cHH-HHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHh----------------
Confidence 22234455678999999999999999 443 4446799999998 99999998642 1 22221
Q ss_pred ccccccC-CCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002226 859 QSCKFRN-HDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 859 ~~~~fRh-~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
+...+. ..|...++++++.. +++++||++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~----ll~~~G~~iv 159 (161)
T PF13489_consen 129 -WRYDRPYGGHVHFFSPDELRQ----LLEQAGFEIV 159 (161)
T ss_dssp -CCGTCHHTTTTEEBBHHHHHH----HHHHTTEEEE
T ss_pred -cCCcCccCceeccCCHHHHHH----HHHHCCCEEE
Confidence 111111 26778899999994 5788899874
No 11
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.55 E-value=1.2e-14 Score=154.95 Aligned_cols=176 Identities=18% Similarity=0.275 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHhhcC-----C------CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhc
Q 002226 695 PLSKQRVEYALQHIKES-----C------ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 763 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~-----k------~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~ 763 (951)
.+...|+.++.+-+... + +++|||+|||.|.++..|++.+ ++|+|||++++|++.|++... ...
T Consensus 61 ~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~--~dP 135 (282)
T KOG1270|consen 61 SMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKK--MDP 135 (282)
T ss_pred hccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhh--cCc
Confidence 45566888876654321 2 3789999999999999999999 899999999999999987622 111
Q ss_pred ccccCCCCCC--CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002226 764 KLDAAVPCTD--VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 840 (951)
Q Consensus 764 ~~~~l~Pr~~--~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf 840 (951)
+... .-++++.+.+++.... .||+|+|.+|+||+.+.+ .|.+.+.+.|||+ .++|+|.|.....++
T Consensus 136 ------~~~~~~~y~l~~~~~~~E~~~~---~fDaVvcsevleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~ 204 (282)
T KOG1270|consen 136 ------VLEGAIAYRLEYEDTDVEGLTG---KFDAVVCSEVLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFA 204 (282)
T ss_pred ------hhccccceeeehhhcchhhccc---ccceeeeHHHHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhh
Confidence 0111 1246777778777653 499999999999998443 4556799999998 999999999887777
Q ss_pred HhhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002226 841 QKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 898 (951)
Q Consensus 841 ~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG 898 (951)
..+. +.|.. ..+.+...|.+..+.++.++..|.+. .++.|. ..|..
T Consensus 205 ~~i~-------~~E~v-l~ivp~Gth~~ekfi~p~e~~~~l~~----~~~~v~~v~G~~ 251 (282)
T KOG1270|consen 205 GTIF-------LAEIV-LRIVPKGTHTWEKFINPEELTSILNA----NGAQVNDVVGEV 251 (282)
T ss_pred cccc-------HHHHH-HHhcCCCCcCHHHcCCHHHHHHHHHh----cCcchhhhhccc
Confidence 6552 23322 23556666666667899999987654 355553 34433
No 12
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=2.7e-13 Score=139.83 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=115.2
Q ss_pred HHHHHhh--cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 703 YALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 703 ~VldlL~--~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|++++... ....++.+.
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~~i~~~ 109 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGR-----------DVAGNVEFE 109 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEE
Confidence 3444444 3567899999999999999999876 69999999999999999876421 112479999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhhhcc
Q 002226 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 860 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~ 860 (951)
++|+.+++ .+||+|++..+++|++++....+.+.+.++++++.++..+|...+...+..+.. .+
T Consensus 110 ~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~--------- 173 (219)
T TIGR02021 110 VNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGE----LF--------- 173 (219)
T ss_pred ECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHh----hC---------
Confidence 99998876 789999999999999866666666779999988866665665444444332211 11
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002226 861 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 896 (951)
Q Consensus 861 ~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~G 896 (951)
.......+.+..+++++. .++.++||.+.-..
T Consensus 174 ~~~~~~~~~~~~~~~~~~----~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 174 PGSSRATSAYLHPMTDLE----RALGELGWKIVREG 205 (219)
T ss_pred cCcccccceEEecHHHHH----HHHHHcCceeeeee
Confidence 111223445567888888 56778899886543
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=6.1e-14 Score=122.67 Aligned_cols=94 Identities=23% Similarity=0.400 Sum_probs=76.2
Q ss_pred EEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccE
Q 002226 717 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 796 (951)
Q Consensus 717 LDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDl 796 (951)
||+|||+|..+..|++.+ ..+|+|+|+++++++.++++.. ..++.+.++|+.++++++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~---------------~~~~~~~~~d~~~l~~~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLK---------------NEGVSFRQGDAEDLPFPDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTT---------------TSTEEEEESBTTSSSS-TT-EEE
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhccc---------------ccCchheeehHHhCccccccccc
Confidence 899999999999999983 2899999999999999988643 23566999999999999999999
Q ss_pred EEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 797 GTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 797 VVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
|++..+++|++ +.. .+.+++.|+|||| .++|
T Consensus 64 v~~~~~~~~~~-~~~-~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHLE-DPE-AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGSS-HHH-HHHHHHHHHEEEEEEEEE
T ss_pred cccccceeecc-CHH-HHHHHHHHHcCcCeEEeC
Confidence 99999999994 444 4446799999999 5543
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.51 E-value=1.9e-13 Score=125.01 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=83.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccc-cccCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFDSR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa-~dLp~~ 790 (951)
++.+|||||||+|.++..+++.. +..+|+|||+|+++++.|+++... .....+++++++|+ ...+ .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~-~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAE-----------EGLSDRITFVQGDAEFDPD-F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-----------TTTTTTEEEEESCCHGGTT-T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh-----------cCCCCCeEEEECccccCcc-c
Confidence 46899999999999999999932 128999999999999999988732 12346999999999 2232 3
Q ss_pred CCCccEEEEcc-ccccCch-hHHHHHHHHHHHccCCC-EEEEEec
Q 002226 791 LHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcie-VLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
...||+|++.. .++++.. ++...+.+.+.+.|+|| .++|.++
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 45799999999 5664543 45556667899999999 7777654
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=5.3e-13 Score=147.65 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|.++..|++..+ .+|+|||+|+.|++.|+++... .+...++++.++|+.++++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~-----------~g~~~~v~~~~~D~~~~~~~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAA-----------QGLSDKVSFQVADALNQPFE 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEEEEcCcccCCCC
Confidence 4678999999999999999998642 7999999999999999876542 12234799999999999998
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++.||+|++.++++|++ +.. .+.+++.++|||| .++|.++.
T Consensus 184 ~~~FD~V~s~~~~~h~~-d~~-~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 184 DGQFDLVWSMESGEHMP-DKR-KFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCccEEEECCchhccC-CHH-HHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999999998 443 4446799999998 77776653
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.50 E-value=3e-13 Score=144.60 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=100.9
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002226 691 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
.|-.|-.......+++.+...++.+|||||||+|..+..+++..+ .+|+|+|+|+.|++.|+++..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~------------ 96 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNS------------ 96 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcC------------
Confidence 344444444455666777777889999999999999998877542 699999999999999987642
Q ss_pred CCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 771 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 771 r~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...++.+..+|+.+.++++++||+|++.++++|++.++...+.+++.++|||| .++++.+.
T Consensus 97 --~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 97 --DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred --cCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 12479999999998888889999999999999998545566667899999999 77666553
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=4.1e-13 Score=141.84 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=86.8
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+++.+...++.+|||||||+|.++..|++.. +..+|+|+|+|+.|++.|+++ ++++.++|
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d 80 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------------------GVDARTGD 80 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcC
Confidence 4445555677899999999999999999875 347899999999999999642 47888999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+.+++ .++.||+|+|..++||++ +....+ ++++++|||| .+++..|+
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l-~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVP-EHADLL-VRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCC-CHHHHH-HHHHHhCCCCcEEEEEcCC
Confidence 98774 467899999999999998 443444 5699999999 77777665
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.49 E-value=8e-13 Score=138.77 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
++....+.+.+.+......+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------------- 85 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------------- 85 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC-----------------
Confidence 444444556666665567899999999999999998876 799999999999999976521
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002226 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
...+.++|+.++++.+++||+|++..+++|++ +....+ .++.++|+|| .++++++....
T Consensus 86 ~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~-d~~~~l-~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 86 ADHYLAGDIESLPLATATFDLAWSNLAVQWCG-NLSTAL-RELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCEEEcCcccCcCCCCcEEEEEECchhhhcC-CHHHHH-HHHHHHcCCCeEEEEEeCCCCc
Confidence 34678999999998888999999999999988 444444 5699999998 88888887543
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=3.5e-13 Score=138.09 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=91.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.++++... .+..++++..+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~------------~~~~~v~~~~~ 85 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAA------------ENLDNLHTAVV 85 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCcceEEec
Confidence 34455555677899999999999999999987 7999999999999999876542 23346889999
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
|+.++++. ..||+|+|..+++|++++....+.+++.++|+|| .+++
T Consensus 86 d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 86 DLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99887664 5799999999999999777788888999999999 4333
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.48 E-value=2e-13 Score=147.44 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=102.4
Q ss_pred cCcccchhcccccccccceeeeecccCC-ChhhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhc
Q 002226 654 DDSARTFSLLSSRACCLEYHITLLRVTE-PPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD 732 (951)
Q Consensus 654 ~~~~~DiSlL~~d~~~LEyyI~LL~v~e-p~EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk 732 (951)
.+.+.|+-.|..+.. +.|+.-+....+ ..++ .....++.+.+.+...++.+|||||||.|.++..+++
T Consensus 14 YDl~ndfy~l~Ld~~-m~YS~~~~~~~~~~Le~----------AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~ 82 (273)
T PF02353_consen 14 YDLGNDFYRLFLDPT-MKYSCAYFDEGDDTLEE----------AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAE 82 (273)
T ss_dssp HTS-HHHHTTTS-TT----S----SSTT--HHH----------HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHH
T ss_pred cCCcHHHHHHhcCCC-CCCCCeecCCchhhHHH----------HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHH
Confidence 555666666666665 777766655322 2332 3445677888888888999999999999999999999
Q ss_pred CCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHH
Q 002226 733 YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEAS 812 (951)
Q Consensus 733 ~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~ 812 (951)
..+ .+|+||.+|++..+.|++++.. ++...++++..+|..+++. .||.|++++++||+......
T Consensus 83 ~~g--~~v~gitlS~~Q~~~a~~~~~~-----------~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~ 146 (273)
T PF02353_consen 83 RYG--CHVTGITLSEEQAEYARERIRE-----------AGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYP 146 (273)
T ss_dssp HH----EEEEEES-HHHHHHHHHHHHC-----------STSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHH
T ss_pred HcC--cEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHH
Confidence 842 8999999999999999988753 2344579999999887764 99999999999999877777
Q ss_pred HHHHHHHHccCCC-EEEEE
Q 002226 813 QFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 813 ~L~eeL~RvLKPG-vLIIS 830 (951)
.|.+.+.++|||| .+++.
T Consensus 147 ~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 147 AFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp HHHHHHHHHSETTEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 8888999999999 55543
No 21
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.48 E-value=1.7e-12 Score=143.03 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 699 QRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 699 QR~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
+.++.+.+.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++....... .....
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~-------~~~~~ 197 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAA-------LPPEV 197 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccc-------ccccc
Confidence 344555666653 356899999999999999999987 79999999999999999876432100 01124
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCch
Q 002226 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDE 854 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS-TPNsEfN~lf~~L~~~~~~eYPde 854 (951)
+++|..+|+.++ ++.||+|+|.++++|++++....+.+.+.+ +.+|.++|+ .|+..+...+..+ + +.
T Consensus 198 ~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~-g---~~---- 265 (315)
T PLN02585 198 LPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI-G---EL---- 265 (315)
T ss_pred ceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH-H---hh----
Confidence 688888887654 478999999999999997666666665654 456755554 4553332333222 0 01
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002226 855 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 899 (951)
Q Consensus 855 ~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~ 899 (951)
+.+.......+.++++++. .++.+.||.|....+-.
T Consensus 266 -----~~g~~~~~r~y~~s~eel~----~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 266 -----FPGPSKATRAYLHAEADVE----RALKKAGWKVARREMTA 301 (315)
T ss_pred -----cCCCCcCceeeeCCHHHHH----HHHHHCCCEEEEEEEee
Confidence 1111111123456899999 46778899997665544
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=3.9e-13 Score=131.00 Aligned_cols=106 Identities=30% Similarity=0.492 Sum_probs=86.9
Q ss_pred CCCEEEEEcCccchhHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002226 712 CATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LA-k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
++.+|||+|||+|.++..|+ +.+ +..+++|+|+|++|++.|++++.. .+..+++|+++|+.+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~------------~~~~ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKE------------LGLDNIEFIQGDIEDLPQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHH------------TTSTTEEEEESBTTCGCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhccccc------------ccccccceEEeehhccccc
Confidence 56899999999999999999 444 458999999999999999987652 24458999999999977
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+. ..||+|++..+++|+. +.... .+.+.++|+++ .+++..++
T Consensus 70 ~~-~~~D~I~~~~~l~~~~-~~~~~-l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LE-EKFDIIISNGVLHHFP-DPEKV-LKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SS-TTEEEEEEESTGGGTS-HHHHH-HHHHHHHEEEEEEEEEEEEE
T ss_pred cC-CCeeEEEEcCchhhcc-CHHHH-HHHHHHHcCCCcEEEEEECC
Confidence 44 7999999999999999 44334 45799999998 77777776
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=5e-13 Score=144.93 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=125.9
Q ss_pred hccccccceecccCCchhhhhhhccCcccchhcccccccccceeeeecccCC-ChhhhhhhhcCCChhHHHHHHHHHHHh
Q 002226 630 QMSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTE-PPEDRMEQALFSPPLSKQRVEYALQHI 708 (951)
Q Consensus 630 q~sv~q~~~~~~~l~~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~e-p~EeRye~~~F~PPL~~QR~e~VldlL 708 (951)
-+|.++...++..+ .+.+.|+-.|-.+.- +.|+.......+ ..+ +-....++.+.+.+
T Consensus 10 ~~~~~~~~~~i~~H----------YDl~n~fy~l~Ld~~-~~Yscayf~~~~~tL~----------eAQ~~k~~~~~~kl 68 (283)
T COG2230 10 RHSKRRAAENIQAH----------YDLSNDFYRLFLDPS-MTYSCAYFEDPDMTLE----------EAQRAKLDLILEKL 68 (283)
T ss_pred cccccchhhhhhhH----------hhcchHHHHHhcCCC-CceeeEEeCCCCCChH----------HHHHHHHHHHHHhc
Confidence 34555666666555 666667777777777 788877776443 222 23345567888888
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++++|||||||.|.++.+++++.+ .+|+|+++|+++.+.+++++.. ++...++++...|..++.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~-----------~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAA-----------RGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHH-----------cCCCcccEEEeccccccc
Confidence 889999999999999999999999863 8999999999999999998763 233348999988988776
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
.. ||.|++++++||+..+..+.|.+.+.++|+||
T Consensus 136 e~---fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 136 EP---FDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred cc---cceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 43 99999999999999888888889999999998
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=9.4e-13 Score=145.09 Aligned_cols=117 Identities=22% Similarity=0.312 Sum_probs=92.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
.++.+...+....+++|||||||+|.++..+++.+. ..|+|+|+|+.++..++..... .....++.+
T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~-----------~~~~~~i~~ 176 (322)
T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKL-----------LGNDQRAHL 176 (322)
T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHh-----------cCCCCCeEE
Confidence 345566677767889999999999999999998873 5799999999999765432110 011347999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+++.++++ .+.||+|+|.++++|+. +....+ +++++.|+|| .+++.+.
T Consensus 177 ~~~d~e~lp~-~~~FD~V~s~~vl~H~~-dp~~~L-~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 177 LPLGIEQLPA-LKAFDTVFSMGVLYHRR-SPLDHL-KQLKDQLVPGGELVLETL 227 (322)
T ss_pred EeCCHHHCCC-cCCcCEEEECChhhccC-CHHHHH-HHHHHhcCCCcEEEEEEE
Confidence 9999999988 78899999999999998 554554 5699999999 7777654
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.44 E-value=1.6e-12 Score=134.29 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=94.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+++.+...++.+|||+|||+|.++..+++..++..+|+|+|+++++++.|++++.. .+..++++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~v~~~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD------------AGLHNVELVH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh------------cCCCceEEEE
Confidence 4566666666788999999999999999987643447999999999999999887642 2345799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+|+.++++..++||+|++..+++|+++ .... .+++.++|+|| .+++..+
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~-l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNVPD-YMQV-LREMYRVVKPGGKVVCLET 152 (231)
T ss_pred echhcCCCCCCCccEEEEecccccCCC-HHHH-HHHHHHHcCcCeEEEEEEC
Confidence 999998888889999999999999984 4344 45799999999 5555444
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=137.94 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHhh--cCCCCEEEEEcCccchhHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 695 PLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 695 PL~~QR~e~VldlL~--~~k~krVLDIGCGeG~ll~~LAk~g-~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|.|..-+..+..++. ..++.+|||||||+|..+..+++.. .+..+|+|+|+|+.|++.|++++...
T Consensus 37 p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~----------- 105 (247)
T PRK15451 37 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY----------- 105 (247)
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 445444444433332 2366899999999999998887631 13479999999999999999886521
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
....+++++++|+.++++. .+|+|++..+++|++++....+.+++.+.|||| .++++..
T Consensus 106 ~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 106 KAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 1234799999999888753 599999999999999777677778899999999 6666653
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=3e-12 Score=131.03 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=88.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.++++... .+. ++.+..+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~------------~~~-~v~~~~~ 84 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAR------------ENL-PLRTDAY 84 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------hCC-CceeEec
Confidence 45556666677899999999999999999987 7999999999999999876532 122 4777778
Q ss_pred cccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 783 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
|+...++. .+||+|++..+++|++.+....+.+++.++|+|| .+++
T Consensus 85 d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 85 DINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred cchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 87665543 5799999999999998777777788899999999 4344
No 28
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.43 E-value=7.3e-12 Score=128.69 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=106.6
Q ss_pred HHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 701 VEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 701 ~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
.+.+.+.+.. .++.+|||||||+|.++..|++.+ ..|+|+|+|+.|++.|+++.... ....++
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~-----------~~~~~i 114 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEA-----------GLAGNI 114 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-----------CCccCc
Confidence 3344555543 456899999999999999999887 57999999999999999876421 111478
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhh
Q 002226 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 857 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~ 857 (951)
.+.++|+. ..++.||+|++..+++|++++....+.+.+.+.++++.++...+.......+..+.. .+
T Consensus 115 ~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~----~~------ 181 (230)
T PRK07580 115 TFEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGG----LF------ 181 (230)
T ss_pred EEEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhcc----cc------
Confidence 99999843 345789999999999999877776776778877655555444443322222222210 11
Q ss_pred hccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 858 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 858 ~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
.......+....+..++.+ ++...||++...
T Consensus 182 ---~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~ 212 (230)
T PRK07580 182 ---PGPSRTTRIYPHREKGIRR----ALAAAGFKVVRT 212 (230)
T ss_pred ---CCccCCCCccccCHHHHHH----HHHHCCCceEee
Confidence 1111112233457778884 566789987543
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=2.3e-13 Score=124.09 Aligned_cols=97 Identities=22% Similarity=0.366 Sum_probs=79.8
Q ss_pred EEEEcCccchhHHHHhcCC--CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCC
Q 002226 716 LVDFGCGSGSLLDSLLDYP--TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 793 (951)
Q Consensus 716 VLDIGCGeG~ll~~LAk~g--~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~s 793 (951)
|||+|||+|..+..+++.. ++..+++|+|+|++|++.++++... .+ .+++++++|+.++++..+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~------------~~-~~~~~~~~D~~~l~~~~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE------------DG-PKVRFVQADARDLPFSDGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH------------TT-TTSEEEESCTTCHHHHSSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh------------cC-CceEEEECCHhHCcccCCC
Confidence 7999999999999998764 1237999999999999999987542 12 2899999999999988889
Q ss_pred ccEEEEc-cccccCchhHHHHHHHHHHHccCCC
Q 002226 794 FDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 794 FDlVVci-eVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
||+|+|. .+++|+.+++...+.+.+.++|+||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999995 5599999999999999999999997
No 30
>PRK06202 hypothetical protein; Provisional
Probab=99.42 E-value=3.4e-12 Score=132.95 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=84.0
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g---~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
..++.+|||||||+|.++..|++.. ++..+|+|+|+|++|++.|+++.. ..++.+..+++..
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---------------~~~~~~~~~~~~~ 122 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---------------RPGVTFRQAVSDE 122 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---------------cCCCeEEEEeccc
Confidence 3466799999999999988887521 123589999999999999977531 1246666777766
Q ss_pred cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002226 787 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
++..+++||+|+|+.++||+++++...+.+++.++++ +.+++......
T Consensus 123 l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~ 170 (232)
T PRK06202 123 LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRS 170 (232)
T ss_pred ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccC
Confidence 7666789999999999999997766667778999998 55555555543
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.41 E-value=2e-12 Score=133.32 Aligned_cols=152 Identities=20% Similarity=0.276 Sum_probs=108.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+++. ++.+|||+|||.|.++..|.+.- .....|||++++.+..+.++ .+.+++
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r-------------------Gv~Viq 61 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR-------------------GVSVIQ 61 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc-------------------CCCEEE
Confidence 45666665 57899999999999999998754 38899999999999988663 467899
Q ss_pred ccccc-c-CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHH-HHhh-c--cCccCCCCch
Q 002226 782 GSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI-LQKS-S--STIQEDDPDE 854 (951)
Q Consensus 782 GDa~d-L-p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~l-f~~L-~--~~~~~eYPde 854 (951)
+|+.+ + .+++++||.|+++.+|+|+..+. ..+ ++|. +-| ..||+.||+.|-.. +.-+ . ++....+|+
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~-~vL-~Eml---RVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy- 135 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVRRPD-EVL-EEML---RVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPY- 135 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHhHHH-HHH-HHHH---HhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCC-
Confidence 99976 3 47899999999999999999443 333 3454 456 89999999876543 2222 1 111223333
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002226 855 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 855 ~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
.| +..+ +....|-.+|.+ ++.+.|+.|+
T Consensus 136 ----~W--YdTP-Nih~~Ti~DFe~----lc~~~~i~I~ 163 (193)
T PF07021_consen 136 ----EW--YDTP-NIHLCTIKDFED----LCRELGIRIE 163 (193)
T ss_pred ----cc--cCCC-CcccccHHHHHH----HHHHCCCEEE
Confidence 13 2222 234589999995 5667799885
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.40 E-value=3.8e-12 Score=140.27 Aligned_cols=162 Identities=20% Similarity=0.299 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
.+..+...+...++++|||||||+|.++..++..+. ..|+|||+|+.|+..++..-. .. ....++.+
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~-~~----------~~~~~v~~ 175 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRK-LL----------DNDKRAIL 175 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHH-Hh----------ccCCCeEE
Confidence 344566666677889999999999999999888773 579999999999987543211 11 12247888
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc--hhHHHHhhccCccCCCCchhh
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE--YNAILQKSSSTIQEDDPDEKT 856 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE--fN~lf~~L~~~~~~eYPde~~ 856 (951)
..+++.+++.. ..||+|+|.++++|++ +....+ ++++++|||| .+++.+...+ .+..+. |.+
T Consensus 176 ~~~~ie~lp~~-~~FD~V~s~gvL~H~~-dp~~~L-~el~r~LkpGG~Lvletl~i~g~~~~~l~----------p~~-- 240 (314)
T TIGR00452 176 EPLGIEQLHEL-YAFDTVFSMGVLYHRK-SPLEHL-KQLKHQLVIKGELVLETLVIDGDLNTVLV----------PKD-- 240 (314)
T ss_pred EECCHHHCCCC-CCcCEEEEcchhhccC-CHHHHH-HHHHHhcCCCCEEEEEEEEecCccccccC----------chH--
Confidence 89999888764 5899999999999998 554555 5699999999 7887765422 111100 000
Q ss_pred hhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEee
Q 002226 857 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGV 897 (951)
Q Consensus 857 ~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsV-Ef~GV 897 (951)
....+ ....|..+..++..|+ ++.||.. ++..+
T Consensus 241 --ry~k~--~nv~flpS~~~L~~~L----~~aGF~~V~i~~~ 274 (314)
T TIGR00452 241 --RYAKM--KNVYFIPSVSALKNWL----EKVGFENFRILDV 274 (314)
T ss_pred --HHHhc--cccccCCCHHHHHHHH----HHCCCeEEEEEec
Confidence 00011 1223557899999875 5679865 34443
No 33
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.40 E-value=3.5e-12 Score=133.37 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 695 PLSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 695 PL~~QR~e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g-~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|.+...++.+..+... .++.+|||+|||+|.++..+++.. .+..+++|+|+|+.|++.|++++...
T Consensus 34 p~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~----------- 102 (239)
T TIGR00740 34 PGYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----------- 102 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 4455555555443321 356799999999999999888753 13478999999999999999876421
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
....++++.++|+.++++. .+|+|++..+++|+++++...+.+++.++|+|| .++++.+
T Consensus 103 ~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 103 HSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 1234789999999988754 589999999999998766667778899999999 7777655
No 34
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.40 E-value=2.8e-12 Score=132.85 Aligned_cols=118 Identities=15% Similarity=0.247 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 695 PLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 695 PL~~QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
++-....+++.+.+.. .++.+|||||||+|.++..|++.. +..+++|||+|++|++.|++++
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~---------------- 87 (204)
T TIGR03587 25 SLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL---------------- 87 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------------
Confidence 3334445555554433 356789999999999999998863 2378999999999999997642
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002226 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
.++.+.++|+.+ ++.+++||+|++.++++|++++.+..+.+++.++++ +.++|...
T Consensus 88 -~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~~v~i~e~ 143 (204)
T TIGR03587 88 -PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-RYILIAEY 143 (204)
T ss_pred -CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-cEEEEEEe
Confidence 246788999888 778889999999999999997777777778999884 35555443
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=5.4e-12 Score=136.26 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=88.1
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.++++... .+. ++++..+|+...+
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~------------~~l-~v~~~~~D~~~~~ 180 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEK------------ENL-NIRTGLYDINSAS 180 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEechhccc
Confidence 33456799999999999999999987 7999999999999999876542 122 7888888887765
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
. .++||+|++..+++|++++....+.+++.++|+|| .+++..+
T Consensus 181 ~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 181 I-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred c-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5 67899999999999999777788888999999999 5455443
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.38 E-value=6.5e-12 Score=143.76 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=93.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+++.+...++.+|||||||+|..+..|++..+ .+|+|+|+|+.+++.|+++.. ....++++.
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~-------------~~~~~v~~~ 319 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAI-------------GRKCSVEFE 319 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhh-------------cCCCceEEE
Confidence 34455655555678999999999999998887653 689999999999999987642 122479999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++|+.+.++++++||+|+|..+++|++ +.... .+++.++|||| .++++++.
T Consensus 320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~-d~~~~-l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 320 VADCTKKTYPDNSFDVIYSRDTILHIQ-DKPAL-FRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EcCcccCCCCCCCEEEEEECCcccccC-CHHHH-HHHHHHHcCCCeEEEEEEec
Confidence 999998888788999999999999998 44344 46799999999 77777654
No 37
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.38 E-value=2.3e-11 Score=124.80 Aligned_cols=175 Identities=21% Similarity=0.339 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHhhc----CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 696 LSKQRVEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 696 L~~QR~e~VldlL~~----~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
+...|.+++.+.+.. ..+.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++..
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------ 89 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKK------------ 89 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------
Confidence 456678888887764 347899999999999999998876 5799999999999999877542
Q ss_pred CCCccEEEEEccccccCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccC
Q 002226 772 TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQE 849 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~ 849 (951)
....++++..+|+.+.+.. .+.||+|++.++++|+.+.. .+.+.+.++|+|| .+++++++.++...+..... .
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~--~- 164 (224)
T TIGR01983 90 DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG--A- 164 (224)
T ss_pred cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh--h-
Confidence 1222688999998877654 37899999999999998443 4446799999999 78888888765554332211 0
Q ss_pred CCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecC
Q 002226 850 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGG 899 (951)
Q Consensus 850 eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsV-Ef~GVG~ 899 (951)
++- ..+.+.....+....++.++.+| +...||++ +..+++.
T Consensus 165 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~----l~~~G~~i~~~~~~~~ 206 (224)
T TIGR01983 165 EYI-----LRIVPKGTHDWEKFIKPSELTSW----LESAGLRVKDVKGLVY 206 (224)
T ss_pred hhh-----hhcCCCCcCChhhcCCHHHHHHH----HHHcCCeeeeeeeEEe
Confidence 000 01111112233345678888855 56779987 4455554
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=4.2e-12 Score=133.21 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||||||+|.++..+++..+ .+|+|+|+|++|++.|+++ ..+.++|+.++|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~--------------------~~~~~~d~~~lp~~d 108 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA--------------------DDKVVGSFEALPFRD 108 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc--------------------cceEEechhhCCCCC
Confidence 467999999999999999988742 6899999999999999652 134689999999999
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCCE--EEEEecCCc
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI--LIVSTPNYE 835 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGv--LIISTPNsE 835 (951)
++||+|++..+++|++ +....+ +++.|+|||.. +-++.|+..
T Consensus 109 ~sfD~v~~~~~l~~~~-d~~~~l-~e~~RvLkp~~~ile~~~p~~~ 152 (226)
T PRK05785 109 KSFDVVMSSFALHASD-NIEKVI-AEFTRVSRKQVGFIAMGKPDNV 152 (226)
T ss_pred CCEEEEEecChhhccC-CHHHHH-HHHHHHhcCceEEEEeCCCCcH
Confidence 9999999999999998 443444 57999999973 334555543
No 39
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.37 E-value=1.2e-11 Score=125.74 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=104.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+. ++.+|||+|||+|.++..+++... ..++|+|+++++++.|+++ ++++++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~-------------------~~~~~~ 61 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVAR-------------------GVNVIQ 61 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHc-------------------CCeEEE
Confidence 34455543 567999999999999998876542 5789999999999988541 467888
Q ss_pred ccccc-c-CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhhhc
Q 002226 782 GSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 859 (951)
Q Consensus 782 GDa~d-L-p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~ 859 (951)
+|+.+ + ++.+++||+|+|..++||++ +....+ +++.+.++ ..+++.||..+......+.... ..|... ..
T Consensus 62 ~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d~~~~l-~e~~r~~~--~~ii~~p~~~~~~~~~~~~~~~--~~~~~~--~~ 133 (194)
T TIGR02081 62 GDLDEGLEAFPDKSFDYVILSQTLQATR-NPEEIL-DEMLRVGR--HAIVSFPNFGYWRVRWSILTKG--RMPVTG--EL 133 (194)
T ss_pred EEhhhcccccCCCCcCEEEEhhHhHcCc-CHHHHH-HHHHHhCC--eEEEEcCChhHHHHHHHHHhCC--ccccCC--CC
Confidence 88865 4 35678899999999999998 443443 45777655 4567788865443211111100 011000 00
Q ss_pred cccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002226 860 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 860 ~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf 894 (951)
...+.+..|..+|+++++. .++.++||.+..
T Consensus 134 ~~~~~~~~~~~~~s~~~~~----~ll~~~Gf~v~~ 164 (194)
T TIGR02081 134 PYDWYNTPNIHFCTIADFE----DLCGELNLRILD 164 (194)
T ss_pred CccccCCCCcccCcHHHHH----HHHHHCCCEEEE
Confidence 1122233455678999999 578889998853
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.36 E-value=5.3e-12 Score=132.93 Aligned_cols=110 Identities=21% Similarity=0.369 Sum_probs=88.0
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|++++ .++.+..+|
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d 84 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------------PDCQFVEAD 84 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECc
Confidence 3444445567899999999999999998875 3479999999999999997652 267899999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+.++. ...+||+|++..+++|++ +....+ +++.++|||| .+++.+|+.
T Consensus 85 ~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l-~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 85 IASWQ-PPQALDLIFANASLQWLP-DHLELF-PRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred hhccC-CCCCccEEEEccChhhCC-CHHHHH-HHHHHhcCCCcEEEEECCCC
Confidence 98765 346899999999999998 443444 5699999999 777777753
No 41
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=9.9e-12 Score=140.09 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=115.4
Q ss_pred ccccccceecccCCchhhhhhhccCcccchhcccccccccceeeeecccCCChhhhhhhhcCCChhHHHHHHHHHHHhhc
Q 002226 631 MSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKE 710 (951)
Q Consensus 631 ~sv~q~~~~~~~l~~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v~ep~EeRye~~~F~PPL~~QR~e~VldlL~~ 710 (951)
+|..+...++..+ .+...|+-.+-.+.. +.|+.-.....+..++ .....++.+.+.+..
T Consensus 107 n~~~~~~~~i~~h----------Yd~~n~~y~l~ld~~-m~ys~g~~~~~~~L~~----------Aq~~k~~~l~~~l~l 165 (383)
T PRK11705 107 QSKKRAWIVGKEH----------YDLGNDLFEAMLDPR-MQYSCGYWKDADTLEE----------AQEAKLDLICRKLQL 165 (383)
T ss_pred CChhhHHHhhhhh----------cCCcHHHHHHhcCCC-CcccccccCCCCCHHH----------HHHHHHHHHHHHhCC
Confidence 4666676666655 455555554445544 5554444432222221 233455667777777
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|.++..+++..+ .+|+|+|+|+++++.|+++.. + ..+++..+|..++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--------------~-l~v~~~~~D~~~l--- 225 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--------------G-LPVEIRLQDYRDL--- 225 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--------------c-CeEEEEECchhhc---
Confidence 7889999999999999999988643 699999999999999988642 1 2478888887665
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+.||+|++.++++|+.......+.+.+.++|||| .+++.+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 46899999999999998666667777899999999 6666554
No 42
>PRK08317 hypothetical protein; Provisional
Probab=99.34 E-value=1.5e-11 Score=124.92 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002226 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
.....+.+.+.+...++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|+++.. ....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-------------~~~~~ 70 (241)
T PRK08317 4 FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-------------GLGPN 70 (241)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-------------CCCCc
Confidence 34444556677777788999999999999999998865345799999999999999987622 12347
Q ss_pred EEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 777 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+++..+|+.+.++....||+|++..+++|+. +.... .+++.++|+|| .+++..++
T Consensus 71 ~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~-l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 71 VEFVRGDADGLPFPDGSFDAVRSDRVLQHLE-DPARA-LAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred eEEEecccccCCCCCCCceEEEEechhhccC-CHHHH-HHHHHHHhcCCcEEEEEecC
Confidence 8999999988888788999999999999998 44344 46799999999 67776664
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=5.6e-11 Score=123.21 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
++...|.+++...+...++.+|||||||+|.++..+++.+ .+++|+|+++.+++.|+++... .+
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------~~- 94 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE------------SG- 94 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH------------cC-
Confidence 3445678888888777778899999999999999998876 6899999999999999876532 11
Q ss_pred ccEEEEEccccccC-CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCC
Q 002226 775 KSAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDP 852 (951)
Q Consensus 775 ~nVtf~qGDa~dLp-~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYP 852 (951)
.++++..+++.+.+ ...+.||+|++..+++|+++ .. .+.+.+.++|+|| .+++++++.........+.. . ++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~-~~-~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~--~-~~- 168 (233)
T PRK05134 95 LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD-PA-SFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVG--A-EY- 168 (233)
T ss_pred CceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC-HH-HHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhh--H-HH-
Confidence 25788888887765 24578999999999999984 33 3446799999999 77888876543322211100 0 00
Q ss_pred chhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002226 853 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 899 (951)
Q Consensus 853 de~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE-f~GVG~ 899 (951)
...........+...++++++. .++.++||.+. ..|...
T Consensus 169 ----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~v~~~~~~~ 208 (233)
T PRK05134 169 ----VLRMLPKGTHDYKKFIKPSELA----AWLRQAGLEVQDITGLHY 208 (233)
T ss_pred ----HhhhcCcccCchhhcCCHHHHH----HHHHHCCCeEeeeeeEEe
Confidence 0001111122344457888887 45778999874 555554
No 44
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.32 E-value=1.1e-11 Score=126.49 Aligned_cols=107 Identities=20% Similarity=0.271 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
..+.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.+++++. .++.++.+|+.+.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~~~ 95 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLPLE 95 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCCCC
Confidence 345799999999999999999887 45679999999999999976531 2688999999999888
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+++||+|++..+++|+. +... +.+++.++|+|| .+++.+++...
T Consensus 96 ~~~fD~vi~~~~l~~~~-~~~~-~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 96 DSSFDLIVSNLALQWCD-DLSQ-ALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CCceeEEEEhhhhhhcc-CHHH-HHHHHHHHcCCCcEEEEEeCCccC
Confidence 88999999999999997 4433 446799999998 88888887554
No 45
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.32 E-value=1.3e-11 Score=128.01 Aligned_cols=124 Identities=17% Similarity=0.299 Sum_probs=94.0
Q ss_pred CCChhHHH-HHHHHHH-HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC
Q 002226 692 FSPPLSKQ-RVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 769 (951)
Q Consensus 692 F~PPL~~Q-R~e~Vld-lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~ 769 (951)
|....|++ |+..++. .|....-.++||+|||.|.++..|+.++ .+++++|+|+.+|+.|++++.
T Consensus 21 ~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~----------- 86 (201)
T PF05401_consen 21 FETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA----------- 86 (201)
T ss_dssp TTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT-----------
T ss_pred CCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC-----------
Confidence 44466776 4555554 4676777899999999999999999998 799999999999999999864
Q ss_pred CCCCCccEEEEEccccccCCCCCCccEEEEccccccCch-hHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 770 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 770 Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+..+|++.++++.+.. +.+.||+|++.+|++++.+ +++..+...+...|+|| .+|+.+..
T Consensus 87 ---~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 87 ---GLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp ---T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ---CCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3468999999998764 5689999999999999985 67778878899999999 67776653
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.31 E-value=1.6e-11 Score=126.97 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.+.++..++.++||+|||+|+.+.+|+++| ..|+++|+|+..++.+++.... ....|+..+.|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~-------------~~l~i~~~~~D 85 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEE-------------EGLDIRTRVAD 85 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH-------------TT-TEEEEE-B
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhh-------------cCceeEEEEec
Confidence 4444566678899999999999999999999 8999999999999998765431 12359999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+.+..+. ..||+|++..|++|++++....+.+.|...++|| ..++.+
T Consensus 86 l~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 86 LNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9888764 6899999999999999998888889999999999 444433
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.31 E-value=3.7e-11 Score=123.62 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=84.3
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 793 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~s 793 (951)
++|||||||+|.++..+++.. +..+|+|+|+|+++++.|++++.. .+...++++..+|+...+.. ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~-----------~gl~~~i~~~~~d~~~~~~~-~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRA-----------LGLQGRIRIFYRDSAKDPFP-DT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-----------cCCCcceEEEecccccCCCC-CC
Confidence 479999999999999998875 236899999999999999887642 12334789999998766553 58
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 794 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 794 FDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
||+|++.++++|+.+ . ..+.+++.++|+|| .+++.++.
T Consensus 68 fD~I~~~~~l~~~~~-~-~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 68 YDLVFGFEVIHHIKD-K-MDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCEeehHHHHHhCCC-H-HHHHHHHHHHcCCCCEEEEEEcc
Confidence 999999999999984 4 34556799999999 77777654
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.29 E-value=4.6e-11 Score=110.21 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
.+-...+.+.+...++.+|||+|||.|.++..+++.. +..+|+|+|+++.+++.+++++.. .+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~ 71 (124)
T TIGR02469 5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARR------------FGVSNI 71 (124)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH------------hCCCce
Confidence 3334556666666667899999999999999999875 237899999999999999877642 123478
Q ss_pred EEEEccccc-cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 778 VLFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 778 tf~qGDa~d-Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
++..+|+.+ .+.....||+|++....+++ ..+.+.+.+.|+|| .++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 72 VIVEGDAPEALEDSLPEPDRVFIGGSGGLL-----QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEeccccccChhhcCCCCEEEECCcchhH-----HHHHHHHHHHcCCCCEEEEEe
Confidence 899998875 33334689999997765443 35566799999999 666654
No 49
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.26 E-value=5.1e-11 Score=124.56 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccC--CCCCCCccEEEEEccccccCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l--~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
++.+|||+|||.|..+.+|+++| .+|+|||+|+.+++.+.+... ........ ..+....+|+++++|+.+++.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENG--LTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcC--CCcceeccccceeeecCceEEEEccCCCCCc
Confidence 56799999999999999999998 899999999999998644211 00000000 000123479999999998875
Q ss_pred C-CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 790 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 790 ~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
. ...||.|+-..+++|++++.+..+.+.+.++|||| .+++.+-.
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 4 45799999999999999988888889999999998 55555443
No 50
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.26 E-value=1.2e-12 Score=118.34 Aligned_cols=96 Identities=25% Similarity=0.350 Sum_probs=58.6
Q ss_pred EEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC--CCCc
Q 002226 717 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGF 794 (951)
Q Consensus 717 LDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~--d~sF 794 (951)
||||||+|.++..+++.. +..+++|+|+|+.|++.|++++... ...+......+..+.... .++|
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~f 67 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAEL------------GNDNFERLRFDVLDLFDYDPPESF 67 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHC------------T---EEEEE--SSS---CCC----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------------CCcceeEEEeecCChhhccccccc
Confidence 799999999999998885 4589999999999998888776532 112333333333332211 2599
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHccCCCEE
Q 002226 795 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 827 (951)
Q Consensus 795 DlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvL 827 (951)
|+|++..|+||++ +.. .+.+.+.++|+||+.
T Consensus 68 D~V~~~~vl~~l~-~~~-~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 68 DLVVASNVLHHLE-DIE-AVLRNIYRLLKPGGI 98 (99)
T ss_dssp SEEEEE-TTS--S--HH-HHHHHHTTT-TSS-E
T ss_pred ceehhhhhHhhhh-hHH-HHHHHHHHHcCCCCC
Confidence 9999999999994 444 555679999999944
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=4.4e-11 Score=127.25 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=87.0
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..++.+|||+|||+|..+..+++..++..+|+|+|+++.|++.|+++... .+..++++.++|+.++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~------------~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK------------AGYTNVEFRLGEIEALPV 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH------------cCCCCEEEEEcchhhCCC
Confidence 44678999999999998877666533345899999999999999887542 233588999999999988
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+++||+|++..+++|.+ +....+ +++.++|||| .++++..
T Consensus 143 ~~~~fD~Vi~~~v~~~~~-d~~~~l-~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ADNSVDVIISNCVINLSP-DKERVF-KEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCceeEEEEcCcccCCC-CHHHHH-HHHHHHcCCCcEEEEEEe
Confidence 888999999999999988 443444 5799999999 6666543
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.24 E-value=1.5e-10 Score=128.99 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||||||+|.++..+++.. +..+|+|+|+|++|++.|+++.. ..++++..+|+.++++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~---------------~~~i~~i~gD~e~lp~~ 175 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---------------LKECKIIEGDAEDLPFP 175 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh---------------ccCCeEEeccHHhCCCC
Confidence 356799999999999998887754 23689999999999999987532 13678999999999988
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
++.||+|++..+++|+++.+ .. .+++.++|+|| .+++..+
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~-~~-L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQ-RG-IKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCceeEEEEcChhhhCCCHH-HH-HHHHHHhcCCCcEEEEEEe
Confidence 88999999999999999543 44 46799999999 6655544
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.24 E-value=1.3e-10 Score=119.02 Aligned_cols=115 Identities=15% Similarity=0.219 Sum_probs=89.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+...+...++.+|||+|||+|.++..+++..+...+++|+|+++.+++.+++++.. .....++++..+|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-----------~~~~~~~~~~~~d 111 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-----------LGLSGNVEFVQGD 111 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-----------cccccCeEEEecc
Confidence 44444445678999999999999999988763357999999999999999886532 1123478999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+.+.+.....||+|++..+++|+.+ .... .+.+.+.|+|| .+++.+
T Consensus 112 ~~~~~~~~~~~D~I~~~~~l~~~~~-~~~~-l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 112 AEALPFPDNSFDAVTIAFGLRNVPD-IDKA-LREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCCCCCCCccEEEEecccccCCC-HHHH-HHHHHHhccCCcEEEEEE
Confidence 9988777788999999999999984 4344 45799999998 555543
No 54
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=1.3e-10 Score=119.92 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=88.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+...++.+|||+|||+|..+..+++..+...+|+|+|+++++++.|++++... +...++++.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-----------~~~~~v~~~ 129 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-----------GYWGVVEVY 129 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 445666676667789999999999999888876433368999999999999998876521 112368999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+|+.+.......||+|++..+++|++ +++.+.|+|| .++++..
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ECCcccCCccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEEc
Confidence 999987555567899999999999887 2477899999 6666543
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.22 E-value=2.7e-11 Score=124.83 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=94.6
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
.|++...+.++..- +.. .+.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|++++.. .
T Consensus 23 ~~~~~~~~~~~~~~-~~~-~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~------------~ 87 (202)
T PRK00121 23 WPRLSPAPLDWAEL-FGN-DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE------------E 87 (202)
T ss_pred chhhcCCCCCHHHH-cCC-CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH------------c
Confidence 34444444444432 233 66899999999999999998875 346899999999999999887642 2
Q ss_pred CCccEEEEEccc-cccC--CCCCCccEEEEccccccCc------hhHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002226 773 DVKSAVLFDGSI-TVFD--SRLHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 838 (951)
Q Consensus 773 ~~~nVtf~qGDa-~dLp--~~d~sFDlVVcieVLEHL~------dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~ 838 (951)
+..++.++++|+ ..++ +..+.||+|++.....+.. ......+.+++.++|||| .+++.+++.++-.
T Consensus 88 ~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~ 163 (202)
T PRK00121 88 GLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE 163 (202)
T ss_pred CCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 335799999999 7666 5677899999876543221 111245567799999998 8888888866553
No 56
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=1.6e-10 Score=119.63 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002226 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
..+..+.+.+...++.+|||||||+|.++..|++..++..+|+|+|+++++++.|++++.. .+..+++
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~------------~g~~~v~ 131 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK------------LGLDNVI 131 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------CCCCCeE
Confidence 3445677777777889999999999999999998764335799999999999999988753 2345899
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+.++|+.+.......||+|++.....+++ +.+.+.|+|| .+++..
T Consensus 132 ~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 132 VIVGDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred EEECCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 99999987655557899999988877776 3467889999 666654
No 57
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.20 E-value=8.7e-11 Score=134.57 Aligned_cols=111 Identities=10% Similarity=0.182 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+++.|++.+++.. ....++++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--------------~~~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--------------GHYKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--------------ccCCceEEEE
Confidence 455666666667899999999999999999886 69999999999999876531 1235789999
Q ss_pred cccc--ccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 782 GSIT--VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 782 GDa~--dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
+|+. .++++.++||+|+|..+++|++++....+.+++.++|||| .+++
T Consensus 90 ~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 90 ADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred ecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9996 3566778999999999999999776677778899999999 4444
No 58
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.2e-10 Score=119.11 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+.-+..+.+.+...++.+|||||||+|.++..+++..++..+|+|+|+++++++.|++++.. .+..++
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~------------~g~~~v 129 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK------------LGYDNV 129 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCe
Confidence 34445677777777889999999999999998887753446999999999999999988752 234579
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
++.++|+.........||+|++....++++ +.+.+.|||| .+++..
T Consensus 130 ~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 130 EVIVGDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999999987666668899999998887776 2467789999 665543
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.18 E-value=1.5e-10 Score=124.31 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=83.4
Q ss_pred CCCEEEEEcCccch----hHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHHhh--hhccc-----ccCCCCC----
Q 002226 712 CATTLVDFGCGSGS----LLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSK--LSKKL-----DAAVPCT---- 772 (951)
Q Consensus 712 k~krVLDIGCGeG~----ll~~LAk~g~----~~~qVVGVDISeemLe~ArkrLsa~--ls~~~-----~~l~Pr~---- 772 (951)
++.+|+|+|||+|. ++..+++..+ ...+|+|+|+|+.||+.|++..-.. ..... .+-.+.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4444544331 1368999999999999998742100 00000 0000000
Q ss_pred ----CCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 773 ----DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 773 ----~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
...+|+|.++|+.+.+++.+.||+|+|..+++|++++....+.+++.+.|+|| .+++
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 11378999999999887788999999999999999777767778899999999 5554
No 60
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.18 E-value=4.3e-10 Score=114.03 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=90.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+.+.+...++.+|||+|||.|.++..+++..+...+++|+|+++.+++.++++.. ...++++..
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------~~~~i~~~~ 94 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------LPLNIEFIQ 94 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------------cCCCceEEe
Confidence 344555555578899999999999999998887422589999999999999987642 123689999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+|+.+.++..+.||+|++..+++|+. +.. .+.+.+.+.|+|| .+++..
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~-~~~-~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVT-DIQ-KALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCcc-cHH-HHHHHHHHHcCCCcEEEEEE
Confidence 99999887777899999999999998 443 4446799999999 555543
No 61
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.17 E-value=3.6e-10 Score=120.80 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=97.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCC-----ceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTAL-----EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~-----~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
-+.....+.+..+.++||++||+|..+..+.++.... .+|+++||++.||..++++.... .+ ....
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~--~l-------~~~~ 159 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR--PL-------KASS 159 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc--CC-------CcCC
Confidence 3445556666778999999999999999988776322 78999999999999998875321 11 1223
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002226 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 837 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN 837 (951)
++.|+.+|++++||++.+||+.++.+-|..+. +..+.+ ++++|+|||| .+.+-.-+...|
T Consensus 160 ~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l-~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 160 RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKAL-REAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred ceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHH-HHHHHhcCCCcEEEEEEcccccc
Confidence 59999999999999999999999999999999 444555 5699999999 555544443333
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=3.3e-10 Score=115.57 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=78.8
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..++.+|||+|||+|.++..++... +..+|+|+|+|+.|++.++++.+. .+..+++++++|+.++.
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~------------~~~~~i~~i~~d~~~~~- 105 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAE------------LGLNNVEIVNGRAEDFQ- 105 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------hCCCCeEEEecchhhcc-
Confidence 3457899999999999998887665 347899999999999999876542 23347999999998874
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
....||+|++.. +++++ .+.+.+.++|+|| .+++...
T Consensus 106 ~~~~fD~I~s~~-~~~~~-----~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 106 HEEQFDVITSRA-LASLN-----VLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ccCCccEEEehh-hhCHH-----HHHHHHHHhcCCCCEEEEEcC
Confidence 357899999876 44444 3445689999999 5555443
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.16 E-value=2.2e-10 Score=117.75 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||+|||+|..+..+++.. +..+|+|+|++++|++.|+++... .+..++++.++|+.+++. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~------------~~l~~i~~~~~d~~~~~~-~ 110 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAE------------LGLKNVTVVHGRAEEFGQ-E 110 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------cCCCCEEEEeccHhhCCC-C
Confidence 37899999999999999888654 347999999999999999887653 233469999999999876 6
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
++||+|++... . ....+.+.+.++|||| .+++.
T Consensus 111 ~~fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 111 EKFDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999753 2 2235557799999999 54444
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.14 E-value=3.1e-10 Score=124.22 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=113.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
..+.+..++....+++|||||||+|+++..|++.++ ..|+|+|.+...+-..+. ++... +....+.+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~-i~~~l----------g~~~~~~~ 169 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEA-IKHFL----------GQDPPVFE 169 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHH-HHHHh----------CCCccEEE
Confidence 556677888888999999999999999999999985 789999999987766432 11111 11123445
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhh
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 858 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~ 858 (951)
....+++++. .+.||+|+|.+||.|.. +++..+. ++...|+|| .+|+.|---+-..- ..+++ ...|
T Consensus 170 lplgvE~Lp~-~~~FDtVF~MGVLYHrr-~Pl~~L~-~Lk~~L~~gGeLvLETlvi~g~~~-~~L~P--~~rY------- 236 (315)
T PF08003_consen 170 LPLGVEDLPN-LGAFDTVFSMGVLYHRR-SPLDHLK-QLKDSLRPGGELVLETLVIDGDEN-TVLVP--EDRY------- 236 (315)
T ss_pred cCcchhhccc-cCCcCEEEEeeehhccC-CHHHHHH-HHHHhhCCCCEEEEEEeeecCCCc-eEEcc--CCcc-------
Confidence 5467788887 78999999999999999 6666665 599999998 77776653221110 01111 0011
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCc-EEEEEeecC
Q 002226 859 QSCKFRNHDHKFEWTRDQFNCWATELAARHNY-SVEFSGVGG 899 (951)
Q Consensus 859 ~~~~fRh~DHkFEWTreEFqaWae~LA~r~GY-sVEf~GVG~ 899 (951)
-....-.|--|...+..|+ ++.|| .|++..+..
T Consensus 237 ----a~m~nv~FiPs~~~L~~wl----~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 237 ----AKMRNVWFIPSVAALKNWL----ERAGFKDVRCVDVSP 270 (315)
T ss_pred ----cCCCceEEeCCHHHHHHHH----HHcCCceEEEecCcc
Confidence 1122334666999999985 45677 566666554
No 65
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=5.3e-10 Score=117.37 Aligned_cols=117 Identities=9% Similarity=0.087 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccc-ccCC-CCCCCccEEEEEccccccC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-DAAV-PCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~-~~l~-Pr~~~~nVtf~qGDa~dLp 788 (951)
.++.+|||+|||.|..+.+|+++| .+|+|||+|+.+++.+.+... +.... .... ......+|+++++|+.+++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~--l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENG--LTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcC--CCccccccccccccccCceEEEECcccCCC
Confidence 356799999999999999999998 899999999999998753211 00000 0000 0112357999999999886
Q ss_pred CCC-CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 789 SRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 789 ~~d-~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
... ..||+|+-..+++|++++.+..+.+.+.++|+|| .+++.+-
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 543 5799999999999999998899999999999999 4444333
No 66
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.13 E-value=1.5e-10 Score=118.73 Aligned_cols=168 Identities=19% Similarity=0.214 Sum_probs=123.5
Q ss_pred hcccccccccceeeeecc-cCCChhhhhhhhcCCChhHHHHHHHHHHHhh----cCCCCEEEEEcCccchhHHHHhcCCC
Q 002226 661 SLLSSRACCLEYHITLLR-VTEPPEDRMEQALFSPPLSKQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYPT 735 (951)
Q Consensus 661 SlL~~d~~~LEyyI~LL~-v~ep~EeRye~~~F~PPL~~QR~e~VldlL~----~~k~krVLDIGCGeG~ll~~LAk~g~ 735 (951)
|.|..+..|.+-|-..+. ..++..+ ...+|.........+|+.+.+. .....+|||+|||+|.++..|++.+
T Consensus 13 S~LGtK~yWD~~Y~~El~Nfr~hgd~--GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg- 89 (227)
T KOG1271|consen 13 SKLGTKSYWDAAYELELTNFREHGDE--GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG- 89 (227)
T ss_pred cccchHHHHHHHHHHHHhhcccCCCc--cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-
Confidence 567788888887766664 3333321 2345665666667778877765 2234499999999999999999887
Q ss_pred CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc-cEEEEEccccccCCCCCCccEEEEccccccCch------
Q 002226 736 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE------ 808 (951)
Q Consensus 736 ~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~-nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~d------ 808 (951)
-...++|||.|+++++.|+.... +.+.. .|+|.+.|+.+.++..+.||+|.--+++.-+..
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe------------~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~ 157 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAE------------RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPV 157 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHH------------hcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcc
Confidence 33569999999999999976433 23333 499999999998888899999998766654431
Q ss_pred hHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhh
Q 002226 809 DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKS 843 (951)
Q Consensus 809 D~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L 843 (951)
..+..+...+.+.|+|| .++|+.-|.....+...+
T Consensus 158 ~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 158 GRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred cceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 22345667789999999 999999998877766544
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=7.6e-10 Score=111.88 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 693 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
.|...+.-+..+.+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++... .
T Consensus 12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~------------~ 78 (187)
T PRK08287 12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR------------F 78 (187)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------h
Confidence 444555555566777776788899999999999999998875 347999999999999999887642 1
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+..++++..+|+.. +. ...||+|++....+++. .+.+.+.+.|+|| .+++..
T Consensus 79 ~~~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~~~~-----~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 79 GCGNIDIIPGEAPI-EL-PGKADAIFIGGSGGNLT-----AIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCCeEEEecCchh-hc-CcCCCEEEECCCccCHH-----HHHHHHHHhcCCCeEEEEEE
Confidence 23468999998742 22 35799999987765543 3445689999999 665543
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.11 E-value=5.1e-10 Score=132.73 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=86.8
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++... ...++.++++|+.+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~-------------~g~~ie~I~gDa~dLp 480 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN-------------EGRSWNVIKGDAINLS 480 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-------------cCCCeEEEEcchHhCc
Confidence 33467899999999999998888765 457999999999999999876431 1236889999998877
Q ss_pred --CCCCCccEEEEccccccCc-----------hhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 789 --SRLHGFDIGTCLEVIEHME-----------EDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 789 --~~d~sFDlVVcieVLEHL~-----------dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+++++||+|++..++||+. .+....+.+++.++|||| .+++..
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6778999999999998762 234456667899999999 666654
No 69
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.08 E-value=2.2e-10 Score=120.06 Aligned_cols=110 Identities=22% Similarity=0.347 Sum_probs=93.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
++.++......+|.|+|||.|..+..|+++. +...++|||-|++||+.|+.++ ++++|..+|
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aD 83 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEAD 83 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------------CCCceeccc
Confidence 3444556678899999999999999999987 6799999999999999997753 488999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+.+... ...+|+++++-|+++++ |-...|.+ +...|.|| .+.+..|+.
T Consensus 84 l~~w~p-~~~~dllfaNAvlqWlp-dH~~ll~r-L~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 84 LRTWKP-EQPTDLLFANAVLQWLP-DHPELLPR-LVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred HhhcCC-CCccchhhhhhhhhhcc-ccHHHHHH-HHHhhCCCceEEEECCCc
Confidence 988863 57899999999999999 44456654 99999999 888888874
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.08 E-value=2.7e-09 Score=107.12 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 692 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 692 F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|+++--..-...+.+.+......+|||+|||+|.++..+++.+ +..+|+++|+++.+++.+++++..
T Consensus 11 Fs~~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~------------ 77 (170)
T PF05175_consen 11 FSPPRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER------------ 77 (170)
T ss_dssp TTTTSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH------------
T ss_pred eCCCCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh------------
Confidence 5555444455677787777788999999999999999999987 445799999999999999887653
Q ss_pred CCCccEEEEEccccccCCCCCCccEEEEccccccCch---hHHHHHHHHHHHccCCC-EE-EEEecCCchhHHHHh
Q 002226 772 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE---DEASQFGNIVLSSFRPR-IL-IVSTPNYEYNAILQK 842 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~d---D~l~~L~eeL~RvLKPG-vL-IISTPNsEfN~lf~~ 842 (951)
.+..+++++.+|+.+... ...||+|+|+-=++.-.. +....|.+...++|+|| .+ ++......+...+..
T Consensus 78 n~~~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~ 152 (170)
T PF05175_consen 78 NGLENVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKE 152 (170)
T ss_dssp TTCTTEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHH
T ss_pred cCcccccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHH
Confidence 233349999999866433 689999999855443332 34567777899999998 44 344444444444443
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.07 E-value=1.6e-09 Score=118.69 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCccchhHH-HHh-cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 711 SCATTLVDFGCGSGSLLD-SLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~-~LA-k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++++|+|||||.|.++. .++ ++. +..+++|+|+++++++.|++.+... .+...+++|.++|+.+..
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~-p~~~~~giD~d~~ai~~Ar~~~~~~----------~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHL-PTTSFHNFDIDPSANDVARRLVSSD----------PDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHhhhc----------cCccCCcEEEECchhhcc
Confidence 388999999999885543 333 344 4579999999999999999876421 122347999999998875
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.....||+|+|. +++++..++...+.+.+.+.|+|| .+++-+.
T Consensus 191 ~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 191 ESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 446789999999 999996454556667899999999 6666553
No 72
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.06 E-value=2.6e-09 Score=107.30 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=86.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
++.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+++++.+++++.. .+ .++++..+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~-~~~~~~~~ 73 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKL------------NN-VGLDVVMT 73 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cC-CceEEEEc
Confidence 34455555677899999999999999999887 4899999999999999887642 12 26889999
Q ss_pred cccccCCCCCCccEEEEccccccCchh-------------------HHHHHHHHHHHccCCC-EEEEEecC
Q 002226 783 SITVFDSRLHGFDIGTCLEVIEHMEED-------------------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~dD-------------------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+.. ..+||+|++.-.++|.+++ ....+.+++.++|+|| .+++.++.
T Consensus 74 d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 74 DLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred cccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 987654 3589999999887777532 1345667799999998 66665554
No 73
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.06 E-value=1.7e-09 Score=111.32 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+...++.+|||+|||+|.++..+++.. .+|+++|+++++++.|++++.. .+..++++.
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~------------~~~~~v~~~ 131 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ------------LGLHNVSVR 131 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH------------CCCCceEEE
Confidence 3455666677788999999999999999888876 5899999999999999987752 234469999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
++|..+.....+.||+|++...+++++ +.+.+.|+|| .++++..
T Consensus 132 ~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 132 HGDGWKGWPAYAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred ECCcccCCCcCCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 999866433457899999998887775 2467899998 6666655
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=6.7e-10 Score=113.64 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC---
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 788 (951)
...+|||||||+|.++..+++.. +...|+|+|+++.+++.|++++.. .+..+++++++|+.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~------------~~l~ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK------------LGLKNLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH------------hCCCCEEEEccCHHHHHHhh
Confidence 45699999999999999999876 457999999999999999887642 23458999999998754
Q ss_pred CCCCCccEEEEccccccCchh------HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002226 789 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
+..+.+|.|++..--.|.... ....+.+++.++|||| .+++.|.+.++...
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~ 140 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFED 140 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 345689999887543332211 0134567799999999 88888888765543
No 75
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.03 E-value=2.6e-09 Score=116.07 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=90.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.++..+..+|||||||+|.++..+++.. +..+++++|. +.+++.+++++... +...+++++.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------gl~~rv~~~~ 205 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEK-----------GVADRMRGIA 205 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhC-----------CccceEEEEe
Confidence 345555555677899999999999999999887 4578999997 78999998776431 2234799999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+|+.+.+++ .+|+|++..++|+.+++....+.+++++.|+|| .++|..
T Consensus 206 ~d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 206 VDIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred cCccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999765543 479999999999998776666777899999998 665553
No 76
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.02 E-value=3.4e-09 Score=115.73 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=81.5
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~~ 790 (951)
++.+|||+|||+|..+..|++......+|+|||+|++||+.|++++.+. ....++.++++|+.+. +..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----------~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----------YPQLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----------CCCceEEEEEEcccchhhhh
Confidence 4578999999999999999887521378999999999999998876531 1123678899999763 332
Q ss_pred CC----CccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 791 LH----GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 791 d~----sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
.. ...++++...+.|+++++...+.+.+.+.|+|| .++|..
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 22 233444556899999888888888999999999 555543
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=7e-09 Score=105.81 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 694 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
|+....-...+...+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.+++++.. .+
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~------------~~ 88 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR------------FG 88 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------hC
Confidence 44444445557777776778899999999999999888654 337999999999999999987652 12
Q ss_pred CccEEEEEccccc-cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 774 VKSAVLFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 774 ~~nVtf~qGDa~d-Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
..+++++.+|+.+ ++.....+|.++... . .....+.+.+.++|+|| .+++.+++.
T Consensus 89 ~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 89 VKNVEVIEGSAPECLAQLAPAPDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCeEEEECchHHHHhhCCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 3479999999865 222223467765422 1 22344556799999999 777877764
No 78
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.98 E-value=1.8e-09 Score=99.80 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=82.6
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--CC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SR 790 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--~~ 790 (951)
+.+|||+|||+|.++..+++.+ ..+++|+|+++..++.|+.++... ....+++++++|+.+.. ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRN-----------GLDDRVEVIVGDARDLPEPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHC-----------TTTTTEEEEESHHHHHHHTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHc-----------cCCceEEEEECchhhchhhcc
Confidence 3589999999999999998877 379999999999999999876531 12357999999998876 66
Q ss_pred CCCccEEEEccccccCc------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 791 LHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~------dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
..+||+|++.--..... .+....|.+.+.++|+|| .+++.+||
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 78999999965433211 123456777899999999 77777775
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.96 E-value=1.1e-08 Score=106.35 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002226 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
.....+.+.+.+. ..+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++.. .+..+
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~------------~~~~~ 138 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR------------LGLDN 138 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCe
Confidence 3334444555543 245699999999999999999875 346999999999999999887642 23347
Q ss_pred EEEEEccccccCCCCCCccEEEEcc------ccccCchhH------------------HHHHHHHHHHccCCC-EEEEEe
Q 002226 777 AVLFDGSITVFDSRLHGFDIGTCLE------VIEHMEEDE------------------ASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVcie------VLEHL~dD~------------------l~~L~eeL~RvLKPG-vLIIST 831 (951)
+.++++|+.+ ++....||+|++.- .++++..+. ...+.+.+.++|+|| .+++..
T Consensus 139 ~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 139 VTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred EEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999999976 34567899999842 223332221 135667799999998 666654
Q ss_pred c
Q 002226 832 P 832 (951)
Q Consensus 832 P 832 (951)
.
T Consensus 218 ~ 218 (251)
T TIGR03534 218 G 218 (251)
T ss_pred C
Confidence 3
No 80
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.96 E-value=6e-09 Score=114.93 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
+.+.-...++.+....++.+|||+|||+|.++..++..+ ..++|+|+++.|++.|++++.. .+..
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~------------~g~~ 230 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEH------------YGIE 230 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHH------------hCCC
Confidence 333333455555566677899999999999998887766 7999999999999999887653 1333
Q ss_pred cEEEEEccccccCCCCCCccEEEEcc------cc-ccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 776 SAVLFDGSITVFDSRLHGFDIGTCLE------VI-EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcie------VL-EHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
++.+.++|+.+++...+.||+|++.- .. .+...+....+.+++.++|+|| .+++.+|+.
T Consensus 231 ~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 231 DFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 58899999999988788999999951 11 1212133356667799999998 666666654
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.94 E-value=1.4e-08 Score=114.94 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
-+++++.+......+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.|++++.... .....++++.
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~---------~~~~~~v~~~ 286 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNM---------PEALDRCEFM 286 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC---------cccCceEEEE
Confidence 3567777766556799999999999999999876 45799999999999999998765321 0112478999
Q ss_pred EccccccCCCCCCccEEEEcccccc---CchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 781 DGSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEH---L~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.+|+... ....+||+|+|+--+|. +.++....+.+.+.++|+|| .+++.
T Consensus 287 ~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 287 INNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred Ecccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9887543 23458999999754432 44444456667799999998 44443
No 82
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=7.8e-09 Score=108.04 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=87.0
Q ss_pred HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE-EEEcccc
Q 002226 707 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV-LFDGSIT 785 (951)
Q Consensus 707 lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt-f~qGDa~ 785 (951)
++.......||+||||+|....+.-.. +...|+++|.++.|-+.|.++... ..++++. |++++.+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E------------~k~~~~~~fvva~ge 136 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAE------------KKPLQVERFVVADGE 136 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhh------------ccCcceEEEEeechh
Confidence 344455567899999999998755422 458999999999999999887653 3456777 9999999
Q ss_pred ccC-CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 786 VFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 786 dLp-~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+++ ..++++|+|+|..+|.-.. ++.+.+. ++.|+|||| .+|+-..
T Consensus 137 ~l~~l~d~s~DtVV~TlvLCSve-~~~k~L~-e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLCSVE-DPVKQLN-EVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCcccccCCeeeEEEEEEEeccC-CHHHHHH-HHHHhcCCCcEEEEEec
Confidence 998 6789999999999999998 5556654 699999999 5555443
No 83
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.92 E-value=1.1e-08 Score=104.93 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
..+..+...++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++... +...++.++.+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----------g~~~~v~~~~~ 99 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----------GVLNNIVLIKG 99 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----------CCCCCeEEEEe
Confidence 3455667778899999999999999888765323368999999999999998876521 11357899999
Q ss_pred cccccCC-CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 783 SITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~-~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+... ....||+|++.... +....+.+.+.+.|+|| .+++.++.
T Consensus 100 d~~~~l~~~~~~~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 100 EAPEILFTINEKFDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred chhhhHhhcCCCCCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 9876432 23689999985421 22234556799999998 66665553
No 84
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.91 E-value=1.7e-08 Score=112.79 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=85.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+++.+......+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++.. .+ ...++..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~------------n~-l~~~~~~ 251 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAA------------NG-LEGEVFA 251 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-CCCEEEE
Confidence 456666665556689999999999999999876 346899999999999999887652 12 2456777
Q ss_pred ccccccCCCCCCccEEEEccccccCc---hhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~---dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+|+... ..+.||+|+|+-.+|+.. .+....|.+.+.++|||| .++|...
T Consensus 252 ~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 252 SNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 777542 356899999998877632 234466777899999998 5544443
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.91 E-value=8.5e-09 Score=116.82 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=94.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.+.+....+..+||||||+|.++..+++.. +...++|+|+++.++..|.+++.. .+..++.++++|
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~------------~gL~NV~~i~~D 180 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL------------LNLKNLLIINYD 180 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEECC
Confidence 3444455566799999999999999999886 567999999999999999887642 345689999999
Q ss_pred cccc--CCCCCCccEEEEccccccCchh----HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002226 784 ITVF--DSRLHGFDIGTCLEVIEHMEED----EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 784 a~dL--p~~d~sFDlVVcieVLEHL~dD----~l~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
+..+ .++++++|.|++.....|.... ....+.+++.|+|+|| .+.+.|-+.+|-..
T Consensus 181 A~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~ 243 (390)
T PRK14121 181 ARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF 243 (390)
T ss_pred HHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence 9764 3567899999986544332211 1146677899999999 88888888776544
No 86
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.90 E-value=5.2e-09 Score=109.60 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+..+..+++.+...++.+|||||||+|+++..|+...++...|++||+.+..++.|++++... +..+|
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------------~~~nv 125 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------------GIDNV 125 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------------TTHSE
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------------ccCce
Confidence 445567788888889999999999999999988877545568999999999999999988642 44589
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+.++|..........||.|++....+.++ ..+...|++| .++++.-
T Consensus 126 ~~~~gdg~~g~~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 126 EVVVGDGSEGWPEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEES-GGGTTGGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred eEEEcchhhccccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999999877655567899999999888777 3467789999 5555444
No 87
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.90 E-value=2.1e-08 Score=86.14 Aligned_cols=101 Identities=23% Similarity=0.397 Sum_probs=78.7
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-CCCC
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-RLHG 793 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-~d~s 793 (951)
+|+|+|||.|.++..+++.. ..+++++|+++.+++.+++... .....++.++.+|+.+... ...+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAA------------ALLADNVEVLKGDAEELPPEADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHh------------cccccceEEEEcChhhhccccCCc
Confidence 58999999999999998832 3799999999999999874321 1234578999999988764 5678
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 794 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 794 FDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
||+|++..+++++. +....+.+.+.+.++|| .++++
T Consensus 67 ~d~i~~~~~~~~~~-~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehh-hHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999863 44455566799999999 44443
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=98.90 E-value=3.5e-08 Score=98.04 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+.+.+...++++|||+|||+|.++..+++.+ .+++|+|+|+++++.+++++.... .....+.+.++
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~----------~~~~~~~~~~~ 80 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNN----------IRNNGVEVIRS 80 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcC----------CCCcceEEEec
Confidence 34455555677899999999999999999885 799999999999999987764210 01112888899
Q ss_pred cccccCCCCCCccEEEEccccccCc-------------------hhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 783 SITVFDSRLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVcieVLEHL~-------------------dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+.+. +....||+|++...+.+-. .+....+.+++.++|+|| .+++..+
T Consensus 81 d~~~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 81 DLFEP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred ccccc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 88663 3345899999865433211 122345677899999998 5555544
No 89
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=112.82 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-+..+.+.+...++.+|||||||+|.++..+++..+....|+|+|+++++++.|++++.. .+..++.+
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~------------~g~~nV~~ 135 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR------------LGIENVIF 135 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEE
Confidence 334555666666778999999999999999988663234799999999999999887642 23457999
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
.++|+.+.......||+|++...+++++ ..+.+.|+|| .+++..
T Consensus 136 i~gD~~~~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 136 VCGDGYYGVPEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EeCChhhcccccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 9999877665567899999987766655 2356789998 655543
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=98.87 E-value=3.7e-08 Score=102.74 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=81.7
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
...++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.+++++.. .+ .++++.++|+.+.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~------------~~-~~~~~~~~d~~~~- 96 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALL------------AG-VDVDVRRGDWARA- 96 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH------------hC-CeeEEEECchhhh-
Confidence 344568999999999999999988752 5899999999999999877542 12 2588889998763
Q ss_pred CCCCCccEEEEccccccCc-------------------hhHHHHHHHHHHHccCCC-EEEEEecCC-chhHHHHh
Q 002226 789 SRLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTPNY-EYNAILQK 842 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~-------------------dD~l~~L~eeL~RvLKPG-vLIISTPNs-EfN~lf~~ 842 (951)
....+||+|++.--..+-. ......+.+.+.++|||| .+++..+.. .+...+..
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~ 171 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTR 171 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHH
Confidence 3457899999963211110 011345566789999999 555544443 44444443
No 91
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.86 E-value=2.8e-08 Score=105.44 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccc-cCCCCCCCccEEEEEccccccCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD-AAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~-~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
.++.+||+.|||.|..+.+|+++| .+|+|+|+|+.+++.+.+...-... ... ....+....++++++||+.+++.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~-~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYE-VIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcc-eecccccceeccCceEEEEccCcCCCc
Confidence 356899999999999999999998 7999999999999998663210000 000 00001123479999999999864
Q ss_pred C---CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 790 R---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 790 ~---d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
. .+.||+|+-...+.+|+++.+..+.+.+.++|+|| .+++-+
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2 36799999999999999999999999999999998 444433
No 92
>PRK04266 fibrillarin; Provisional
Probab=98.84 E-value=3.2e-08 Score=104.69 Aligned_cols=107 Identities=8% Similarity=0.072 Sum_probs=77.8
Q ss_pred hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002226 708 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 708 L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
+...++.+|||+|||+|.++..+++..+ ...|+|+|+++.|++.+.++... ..++.++.+|+.+.
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~--------------~~nv~~i~~D~~~~ 132 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE--------------RKNIIPILADARKP 132 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh--------------cCCcEEEECCCCCc
Confidence 5556788999999999999999998752 36899999999999987665321 14789999998752
Q ss_pred C---CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 788 D---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 788 p---~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
. .....||+|++... .+++...+.+++.++|||| .++|+.+-
T Consensus 133 ~~~~~l~~~~D~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 133 ERYAHVVEKVDVIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred chhhhccccCCEEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1 11346999985321 1233345556799999999 77776553
No 93
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.84 E-value=3.2e-08 Score=107.61 Aligned_cols=102 Identities=21% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++++|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|+++.... .....+.+..++... ...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n-----------~~~~~~~~~~~~~~~--~~~ 223 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELN-----------QVSDRLQVKLIYLEQ--PIE 223 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeccccc--ccC
Confidence 568999999999999998888763 68999999999999998876421 112346666666332 335
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++||+|++..+.++ ...+...+.++|||| .++++...
T Consensus 224 ~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 224 GKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 68999999765433 334556799999999 77776654
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.83 E-value=5.5e-08 Score=105.82 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... +...+++++++|+.+. .+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~-----------~~~~~i~~~~~D~~~~-~~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIQSDLFAA-LP 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEECchhhc-cC
Confidence 356799999999999999999875 3479999999999999999876421 1124799999998643 23
Q ss_pred CCCccEEEEc------cccccCch-----------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 791 LHGFDIGTCL------EVIEHMEE-----------------DEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVci------eVLEHL~d-----------------D~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...||+|+++ ..+.++.+ +....+.+.+.++|+|| .+++.+.+
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 4579999995 12222221 12245566788999998 66666665
No 95
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.82 E-value=6.7e-08 Score=104.72 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=79.5
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC-ccEEEEEccccccCCCCC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~-~nVtf~qGDa~dLp~~d~ 792 (951)
.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|+++... .+. .+++++++|+.+. ....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~------------~~~~~~v~~~~~d~~~~-~~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEK------------NQLEHRVEFIQSNLFEP-LAGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCCcEEEEECchhcc-CcCC
Confidence 699999999999999999876 346999999999999999987642 122 3599999998763 3334
Q ss_pred CccEEEEc-------------cccccCch----------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 793 GFDIGTCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 793 sFDlVVci-------------eVLEHL~d----------D~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.||+|+++ +++.|-+. +....+.+.+.++|+|| .+++.+.+.
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 79999995 34444431 13445667788999999 666666553
No 96
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.3e-08 Score=102.92 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=92.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
...+.+.+...++.+|||||||+|+.+..|++.. .+|+.||+.++..+.|++++.. -+..+|.+.
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~------------lg~~nV~v~ 125 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLET------------LGYENVTVR 125 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHH------------cCCCceEEE
Confidence 3467778888899999999999999999999998 6999999999999999998763 355679999
Q ss_pred EccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 781 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
+||...--.....||.|+.......+| +.+...|+|| .++++.-
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 999988766778999999999999998 3466789998 6666554
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.81 E-value=3.4e-08 Score=105.05 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC-ccEEEEEccccccCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~-~nVtf~qGDa~dLp~ 789 (951)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. ..+.+..++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~------------~~~~~~~~~~~~~------ 177 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAEL------------NGVELNVYLPQGD------ 177 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH------------cCCCceEEEccCC------
Confidence 4678999999999999998888763 4699999999999999987642 111 234444433
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..||+|+++... +....+.+.+.++|||| .++++..
T Consensus 178 --~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 178 --LKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --CCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 279999986442 33345566799999999 6666543
No 98
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=7.5e-08 Score=102.73 Aligned_cols=195 Identities=22% Similarity=0.306 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC--------------------C
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--------------------P 770 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~--------------------P 770 (951)
..++.+|||||..|.++..+++..+ ...|+|+||++..|+.|++.+.-..+.. -.+. +
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~-~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHE-TEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccccccc-ccccCCCcccccccccccccccccc
Confidence 4678999999999999999999874 3579999999999999998764221110 0000 0
Q ss_pred ----CCCCccEEEEEcccc-----ccCCCCCCccEEEEccccc--cCc--hhHHHHHHHHHHHccCCCEEEEEecCCchh
Q 002226 771 ----CTDVKSAVLFDGSIT-----VFDSRLHGFDIGTCLEVIE--HME--EDEASQFGNIVLSSFRPRILIVSTPNYEYN 837 (951)
Q Consensus 771 ----r~~~~nVtf~qGDa~-----dLp~~d~sFDlVVcieVLE--HL~--dD~l~~L~eeL~RvLKPGvLIISTPNsEfN 837 (951)
..-+.++.+...+.. -+......||+|+|..+-. |+. ++-+..|...+.+.|.||+++|..|-. |.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp-Wk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP-WK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc-hH
Confidence 001112222222111 1123456899999987643 332 455667777899999999777777753 44
Q ss_pred HHHHhhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCCCCCCCccceeeeeec
Q 002226 838 AILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGGSGDREPGFASQIAVFRS 916 (951)
Q Consensus 838 ~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsV-Ef~GVG~~p~ge~G~~TQIAVFrR 916 (951)
.+..+- +....+.......+..++.|..|+.... -|++- +-.++-. .....||..+|-+|++
T Consensus 214 sY~kaa--------------r~~e~~~~ny~~i~lkp~~f~~~l~q~~--vgle~~e~~~~~~-~~~skgf~R~i~~y~K 276 (288)
T KOG2899|consen 214 SYKKAA--------------RRSEKLAANYFKIFLKPEDFEDWLNQIV--VGLESVEDLGLIV-SAASKGFDRPILLYRK 276 (288)
T ss_pred HHHHHH--------------HHHHHhhcCccceecCHHHHHhhhhhhh--hheeeeccccccc-cccCccccceeeeeec
Confidence 433221 0111222333445679999998876542 24432 2222211 1235799999999999
Q ss_pred CCCCCCccc
Q 002226 917 RTPPEEDDL 925 (951)
Q Consensus 917 ~~~~~~~~~ 925 (951)
+-......+
T Consensus 277 k~~~~~~~i 285 (288)
T KOG2899|consen 277 KLHPKTDAI 285 (288)
T ss_pred cCCCccCcC
Confidence 776665544
No 99
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.79 E-value=2.9e-08 Score=104.68 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhcC--CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 696 LSKQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 696 L~~QR~e~VldlL~~~--k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
+...+.+..++++... ...-|||||||+|..+..|...+ ...+|+|||+.||+.|.++.-
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~--------------- 93 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVEREL--------------- 93 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhh---------------
Confidence 3344445555555443 46789999999999999888877 899999999999999986311
Q ss_pred CccEEEEEcccc-ccCCCCCCccEEEEccccccC---------chhHHHHHHHHHHHccCCC-EEEE
Q 002226 774 VKSAVLFDGSIT-VFDSRLHGFDIGTCLEVIEHM---------EEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 774 ~~nVtf~qGDa~-dLp~~d~sFDlVVcieVLEHL---------~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
.-.++.+|+- -+||+.+.||.++++..+.++ +...+..|...++.+|++| ..++
T Consensus 94 --egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 94 --EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred --hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 2356667764 489999999999998887655 3344556666799999998 5444
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.78 E-value=5.8e-08 Score=101.20 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.++.+|||||||+|.++..+++..++...|+|||+++ | . ...+++++++|+.+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~-----------------~~~~v~~i~~D~~~~~~~ 106 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D-----------------PIVGVDFLQGDFRDELVL 106 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c-----------------CCCCcEEEecCCCChHHH
Confidence 4567999999999999999988764446999999988 1 0 1136899999998853
Q ss_pred ------CCCCCccEEEEccccccCchh---H------HHHHHHHHHHccCCC-EEEEEecCC-chhHHHH
Q 002226 789 ------SRLHGFDIGTCLEVIEHMEED---E------ASQFGNIVLSSFRPR-ILIVSTPNY-EYNAILQ 841 (951)
Q Consensus 789 ------~~d~sFDlVVcieVLEHL~dD---~------l~~L~eeL~RvLKPG-vLIISTPNs-EfN~lf~ 841 (951)
....+||+|+|..+.++.... . ...+.+++.++|+|| .+++.+... ++..++.
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~ 176 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLR 176 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHH
Confidence 456789999998776665421 1 123456799999999 676656553 3344444
No 101
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.76 E-value=3.4e-08 Score=109.97 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc----
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---- 787 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL---- 787 (951)
++.+|||+|||-|.-+.-..+.. ...++|+||+...|+.|++|+.+........ . ....-...++.+|...-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~-~-~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSK-Q-YRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H-T-SEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccc-c-ccccchhheeccccccchhhh
Confidence 67899999999888665554443 4899999999999999999984322110000 0 00113567888887542
Q ss_pred --CCCCCCccEEEEccccccCc--hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002226 788 --DSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 788 --p~~d~sFDlVVcieVLEHL~--dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+.....||+|.|...|||.- ++.+..|++++...|+|| .+|.+||+.+
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22235899999999999986 345667888999999999 8899999864
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.76 E-value=1e-07 Score=101.08 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=80.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+...+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++. . ....++.++.
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~-----------~~~~~i~~~~ 164 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-H-----------GLGARVEFLQ 164 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-h-----------CCCCcEEEEE
Confidence 334444445567899999999999999998876 45799999999999999988754 1 1234799999
Q ss_pred ccccccCCCCCCccEEEEcc------ccccCch------------------hHHHHHHHHHHHccCCC-EEEE
Q 002226 782 GSITVFDSRLHGFDIGTCLE------VIEHMEE------------------DEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcie------VLEHL~d------------------D~l~~L~eeL~RvLKPG-vLII 829 (951)
+|+.+.. ..+.||+|++.- .++.+.+ +....+.+++.++|+|| .+++
T Consensus 165 ~d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 165 GDWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ccccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 9985532 246899999841 1121221 11245556788999998 5555
No 103
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.75 E-value=6.8e-08 Score=96.58 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=71.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++. ...++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~--------------~~~~v~ii~ 65 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFA--------------AADNLTVIH 65 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhc--------------cCCCEEEEE
Confidence 345566666677899999999999999999886 799999999999999987653 124799999
Q ss_pred ccccccCCCCCCccEEEEccccccCc
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~ 807 (951)
+|+.++++....||.|++.-- .|+.
T Consensus 66 ~D~~~~~~~~~~~d~vi~n~P-y~~~ 90 (169)
T smart00650 66 GDALKFDLPKLQPYKVVGNLP-YNIS 90 (169)
T ss_pred CchhcCCccccCCCEEEECCC-cccH
Confidence 999998877777999988643 3454
No 104
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.74 E-value=1.6e-07 Score=103.51 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
..+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... +...+++++++|+.+.. +..
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~-----------~l~~~i~~~~~D~~~~l-~~~ 200 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIESDLFAAL-PGR 200 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----------CCCCcEEEEECchhhhC-CCC
Confidence 3789999999999999998875 3479999999999999999876521 11236999999986532 345
Q ss_pred CccEEEEc------cccc-------cCch----------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 793 GFDIGTCL------EVIE-------HMEE----------DEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 793 sFDlVVci------eVLE-------HL~d----------D~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.||+|+++ ..+. |-+. +....+.+.+.++|+|| .+++.+.+
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 79999986 1111 2111 12245566788999999 66665544
No 105
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.72 E-value=4e-08 Score=103.55 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=104.6
Q ss_pred hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC--CCCCccEEEEEcccc
Q 002226 708 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP--CTDVKSAVLFDGSIT 785 (951)
Q Consensus 708 L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P--r~~~~nVtf~qGDa~ 785 (951)
+....+.+||+.|||.|..+.+|+++| .+|+|+|+|+.+++.+.+.... ......... .....+|++++||+.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~--~~~~~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNL--EPTVTSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTT--EEECTTCTTEEEETTSSEEEEES-TT
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhcc--CCCcccccceeeecCCceEEEEcccc
Confidence 445566799999999999999999998 8999999999999998543221 000000000 012347899999999
Q ss_pred ccCCCC-CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccc
Q 002226 786 VFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 863 (951)
Q Consensus 786 dLp~~d-~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~f 863 (951)
+++... +.||+|+=...+.-|+++.+..+.+.+.++|+|| .+++.|-..... .
T Consensus 108 ~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~------------~------------- 162 (218)
T PF05724_consen 108 ELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG------------E------------- 162 (218)
T ss_dssp TGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS------------C-------------
T ss_pred cCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc------------C-------------
Confidence 987654 4899999999999999999999999999999999 533333332100 0
Q ss_pred cCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCC
Q 002226 864 RNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGS 900 (951)
Q Consensus 864 Rh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~ 900 (951)
...--|..+.+++.+ +.. -+|.++.......
T Consensus 163 -~~GPPf~v~~~ev~~----l~~-~~f~i~~l~~~~~ 193 (218)
T PF05724_consen 163 -MEGPPFSVTEEEVRE----LFG-PGFEIEELEEEDS 193 (218)
T ss_dssp -SSSSS----HHHHHH----HHT-TTEEEEEEEEEE-
T ss_pred -CCCcCCCCCHHHHHH----Hhc-CCcEEEEEecccc
Confidence 001124467888884 333 5888887666544
No 106
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=9.4e-08 Score=105.13 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=80.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc-EEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS-AVL 779 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n-Vtf 779 (951)
++++-+.+. ++++|||+|||+|.++...++.|. .+|+|+|+++.+++.|+++... ++... +..
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~------------N~v~~~~~~ 216 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARL------------NGVELLVQA 216 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHH------------cCCchhhhc
Confidence 334444433 889999999999999999999995 7899999999999999987642 22221 222
Q ss_pred EEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
...+....+ ....||+|+++-. .+.+..+...+.+.+||| .+|+|-.-.+.
T Consensus 217 ~~~~~~~~~-~~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 217 KGFLLLEVP-ENGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred ccccchhhc-ccCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 222222222 2368999999753 255567777899999998 88887655443
No 107
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.72 E-value=1.6e-08 Score=107.67 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=81.4
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHhhcCCCC-EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhc
Q 002226 685 DRMEQALFSPPLSKQRVEYALQHIKESCAT-TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 763 (951)
Q Consensus 685 eRye~~~F~PPL~~QR~e~VldlL~~~k~k-rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~ 763 (951)
++|.++. |-|+ .+++..+....++. .++|+|||+|.-++.++.+. .+|+|+|+|++||+.|++.-..
T Consensus 10 ~~Y~~AR---P~YP--tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~---- 77 (261)
T KOG3010|consen 10 ADYLNAR---PSYP--TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPV---- 77 (261)
T ss_pred HHHhhcC---CCCc--HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCc----
Confidence 4565555 2232 44555555544443 89999999998888888887 7999999999999999763210
Q ss_pred ccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC
Q 002226 764 KLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 764 ~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
+......+....++.++.-.+++.|+|+|...+|+++.+ .|.+++.|+||+.
T Consensus 78 -------~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle---~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 78 -------TYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLE---RFYKEAYRVLRKD 129 (261)
T ss_pred -------ccccCCccccccccccccCCCcceeeehhhhhHHhhchH---HHHHHHHHHcCCC
Confidence 001111222233333343347899999999999999944 5667899999986
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=8.4e-08 Score=110.23 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=85.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.+++++.. .+..+|++.++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------~g~~~v~~~~~ 308 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------LGITIIETIEG 308 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------hCCCeEEEEeC
Confidence 444555666778999999999999888876532236899999999999999988753 23457999999
Q ss_pred cccccCCCCCCccEEEE----c--ccc---------------ccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 783 SITVFDSRLHGFDIGTC----L--EVI---------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVc----i--eVL---------------EHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
|+.+++ ....||+|++ . +++ +++...+ ..+...+.++|||| .++.+|...
T Consensus 309 Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q-~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 309 DARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ-AELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred cccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH-HHHHHHHHHhcCCCcEEEEEeCCC
Confidence 998775 4568999995 1 222 2222122 34556799999999 777777654
No 109
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.68 E-value=1.1e-07 Score=102.32 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=84.9
Q ss_pred HHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 706 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
..+...++.+|||+|||.|..+..+++..+....|+++|+++.+++.+++++.. .+..++.+.++|+.
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~------------~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR------------CGVLNVAVTNFDGR 132 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEecCCHH
Confidence 345566788999999999999998887643336899999999999999988752 34457999999988
Q ss_pred ccCCCCCCccEEEE------ccccccCch--------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 786 VFDSRLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 786 dLp~~d~sFDlVVc------ieVLEHL~d--------------D~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.++.....||+|++ .+++.+-++ .....+.+.+.++|||| .++.+|-.
T Consensus 133 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 133 VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 77655567999986 223332221 11234556789999998 77777654
No 110
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=1.7e-07 Score=107.38 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=90.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+...+...++.+|||+|||.|..+..+++..+...+|+++|+++.+++.+++++.. .+..+|++..
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r------------~g~~~v~~~~ 309 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR------------LGLKSIKILA 309 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH------------cCCCeEEEEe
Confidence 3555566777789999999999999998887643346899999999999999988752 3445799999
Q ss_pred ccccccC----CCCCCccEEEE------ccccccCchh-------H-------HHHHHHHHHHccCCC-EEEEEecC
Q 002226 782 GSITVFD----SRLHGFDIGTC------LEVIEHMEED-------E-------ASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 782 GDa~dLp----~~d~sFDlVVc------ieVLEHL~dD-------~-------l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+|+.+++ ...+.||.|++ .+++.|-++. . ...+.+++.++|||| .++.+|..
T Consensus 310 ~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 310 ADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9998775 33568999996 2566655421 1 245566799999998 67766654
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.67 E-value=2.9e-07 Score=95.18 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=94.2
Q ss_pred ChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 694 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
|...+.-+...+..|...++.+++|||||+|..+..++..+ +..+|++||-++++++..+++..+ -+
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~------------fg 82 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAAR------------FG 82 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHH------------hC
Confidence 33444455567788888999999999999999999999655 678999999999999999887653 24
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
.+++.++.|++.+.-.....||+|+..+. ..++ .+.+.+...|||| .+++..
T Consensus 83 ~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-~~i~-----~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 83 VDNLEVVEGDAPEALPDLPSPDAIFIGGG-GNIE-----EILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCcEEEEeccchHhhcCCCCCCEEEECCC-CCHH-----HHHHHHHHHcCcCCeEEEEe
Confidence 67999999999876444448999999988 5555 4556788899999 666543
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=5.5e-07 Score=95.56 Aligned_cols=163 Identities=13% Similarity=0.051 Sum_probs=103.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
-+++..+++..++++|||+|||+|..+..|++..++..+|+++|+++++++.|++++... +...+++++
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----------gl~~~i~~~ 125 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----------GVDHKINFI 125 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 345555556668899999999999988878765434479999999999999999887532 223579999
Q ss_pred EccccccCC------CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCch
Q 002226 781 DGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDE 854 (951)
Q Consensus 781 qGDa~dLp~------~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde 854 (951)
.||+.+.-. ....||+|+.-.- . +....+.+.+.+.|+||.+|+.. | .+|..... .
T Consensus 126 ~gda~~~L~~l~~~~~~~~fD~VfiDa~----k-~~y~~~~~~~~~ll~~GG~ii~d-n----~l~~G~v~--~------ 187 (234)
T PLN02781 126 QSDALSALDQLLNNDPKPEFDFAFVDAD----K-PNYVHFHEQLLKLVKVGGIIAFD-N----TLWFGFVA--Q------ 187 (234)
T ss_pred EccHHHHHHHHHhCCCCCCCCEEEECCC----H-HHHHHHHHHHHHhcCCCeEEEEE-c----CCcCCeec--C------
Confidence 999976411 1468999976322 2 33345556789999999544431 1 12221110 0
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002226 855 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 899 (951)
Q Consensus 855 ~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~ 899 (951)
. .....++.. -....++++.+.+.....|...+..+|+
T Consensus 188 -----~-~~~~~~~~~-~~~~~ir~~~~~i~~~~~~~~~~lp~gd 225 (234)
T PLN02781 188 -----E-EDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGD 225 (234)
T ss_pred -----c-ccccchhhh-HHHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 0 000011111 1123455555566666688888888886
No 113
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=2.7e-07 Score=106.04 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+...+|+++|+++.+++.+++++.. .+..++++.++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------~g~~~v~~~~~ 295 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------LKLSSIEIKIA 295 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCeEEEEEC
Confidence 444556667788999999999999988887643347999999999999999988752 24456899999
Q ss_pred cccccC-CCCCCccEEEE------ccccccCc-------hh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002226 783 SITVFD-SRLHGFDIGTC------LEVIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp-~~d~sFDlVVc------ieVLEHL~-------dD-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.+++ ...+.||.|++ .+++.+-+ .+ ....+.+.+.++|||| .++.+|..
T Consensus 296 Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 296 DAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred chhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998776 34568999986 33443322 11 1234455789999998 77777765
No 114
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.60 E-value=4.1e-07 Score=104.00 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC-ccEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLF 780 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~-~nVtf~ 780 (951)
.++...+...++.+|||+|||.|..+..+++..+ ..+|+|+|+++.+++.+++++... +. ..+++.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~------------g~~~~v~~~ 294 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRL------------GLTIKAETK 294 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHc------------CCCeEEEEe
Confidence 3566667777889999999999999999887652 479999999999999999887531 22 245557
Q ss_pred EccccccCC--CCCCccEEEE------ccccccCchh--------------HHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 781 DGSITVFDS--RLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 781 qGDa~dLp~--~d~sFDlVVc------ieVLEHL~dD--------------~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
.+|....+. ....||.|++ .+++.+.++- ....+.+++.++|||| .++.+|...
T Consensus 295 ~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 295 DGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 777765543 4578999985 3567665521 1244556799999999 788887754
No 115
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.60 E-value=8.3e-07 Score=95.14 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 696 LSKQRVEYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 696 L~~QR~e~VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
-.+..++.+...+... ...+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~------------~-- 133 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLAD------------A-- 133 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------c--
Confidence 3344555555554432 34589999999999999988764 236899999999999999887642 1
Q ss_pred ccEEEEEccccccCC--CCCCccEEEEcc------ccccCchh------------------HHHHHHHHHHHccCCC-EE
Q 002226 775 KSAVLFDGSITVFDS--RLHGFDIGTCLE------VIEHMEED------------------EASQFGNIVLSSFRPR-IL 827 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~--~d~sFDlVVcie------VLEHL~dD------------------~l~~L~eeL~RvLKPG-vL 827 (951)
.++++++|+.+... ....||+|++.- .+..++++ ....+.+.+.++|+|| .+
T Consensus 134 -~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l 212 (251)
T TIGR03704 134 -GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHL 212 (251)
T ss_pred -CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 24788899865321 135799999852 22333222 1235556678999998 66
Q ss_pred EEEecCCchhHHHH
Q 002226 828 IVSTPNYEYNAILQ 841 (951)
Q Consensus 828 IISTPNsEfN~lf~ 841 (951)
++.+.......+..
T Consensus 213 ~l~~~~~~~~~v~~ 226 (251)
T TIGR03704 213 LVETSERQAPLAVE 226 (251)
T ss_pred EEEECcchHHHHHH
Confidence 66666554444443
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=2.9e-07 Score=105.66 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------~g~~~v~~~~~ 308 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------LGLTNIETKAL 308 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 455566666788999999999999999887642347999999999999999987652 23446999999
Q ss_pred cccccCCC-CCCccEEEEc------cccccCch-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002226 783 SITVFDSR-LHGFDIGTCL------EVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 783 Da~dLp~~-d~sFDlVVci------eVLEHL~d-------D-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
|+.++... .+.||+|++. +++.|-++ . ....+.+.+.++|||| .++.+|..
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99876421 2689999963 23333221 1 1234566789999999 66766654
No 117
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.59 E-value=1.9e-08 Score=106.45 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=78.8
Q ss_pred HHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 706 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
..++..+-+++||+|||+|.....|.... .+++|||||++|++.|.++- . --+++++++.
T Consensus 119 ~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg---------------~--YD~L~~Aea~ 178 (287)
T COG4976 119 GKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG---------------L--YDTLYVAEAV 178 (287)
T ss_pred HhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc---------------c--hHHHHHHHHH
Confidence 33344457899999999999999888776 68999999999999997641 1 1234455554
Q ss_pred ccC--CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 786 VFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 786 dLp--~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+- .....||+|++.+|+.++. +--..|. .+.+.|+|| .+++++-.
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~YlG-~Le~~~~-~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYLG-ALEGLFA-GAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhhc-chhhHHH-HHHHhcCCCceEEEEecc
Confidence 332 3467899999999999999 4334444 589999999 67776654
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.59 E-value=4.1e-07 Score=99.05 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-C
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~ 789 (951)
..+++|||||||.|..++.++++. ...+|++||+++++++.|++.+...... ....++++++.+|+...- .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-------~~~d~rv~v~~~Da~~~l~~ 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-------AYDDPRVELVIGDGIKFVAE 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-------cccCCceEEEECchHHHHhh
Confidence 357899999999999999998874 3479999999999999999876421100 012468999999997643 2
Q ss_pred CCCCccEEEEccccccCchhH--HHHHHHHHHHccCCCEEEE
Q 002226 790 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPGvLII 829 (951)
..+.||+|++-..-.+.+... ...|.+.+.+.|+||++++
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 356899999854322222121 1455567999999995444
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=3.5e-07 Score=104.64 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=84.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++.. .+. ++++.++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~------------~g~-~~~~~~~ 300 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQR------------LGL-KATVIVG 300 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHH------------cCC-CeEEEEc
Confidence 455566667889999999999999999988763 26899999999999999987652 222 4789999
Q ss_pred cccccCC--CCCCccEEEE----cc--ccccCc-------hh-------HHHHHHHHHHHccCCC-EEEEEec
Q 002226 783 SITVFDS--RLHGFDIGTC----LE--VIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 Da~dLp~--~d~sFDlVVc----ie--VLEHL~-------dD-------~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+.+++. ...+||.|++ .. ++.+-+ ++ ....+.+.+.++|||| .++++|.
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9987642 3567999993 32 322211 11 1234566789999999 7777775
No 120
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.58 E-value=4.9e-07 Score=99.48 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
...++.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++... .+..++
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~------------~~l~~v 223 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE------------LGLTNV 223 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCce
Confidence 3344455556555567899999999999999999976 7999999999999999887642 234579
Q ss_pred EEEEccccccCC-CCCCccEEEEc
Q 002226 778 VLFDGSITVFDS-RLHGFDIGTCL 800 (951)
Q Consensus 778 tf~qGDa~dLp~-~d~sFDlVVci 800 (951)
+++++|+.++.. ....||+|++.
T Consensus 224 ~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 224 QFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred EEEEcCHHHHHHhcCCCCeEEEEC
Confidence 999999987643 23579999876
No 121
>PHA03411 putative methyltransferase; Provisional
Probab=98.57 E-value=6.9e-07 Score=97.52 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=71.8
Q ss_pred hhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccC
Q 002226 689 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 768 (951)
Q Consensus 689 ~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l 768 (951)
..+|.|+-.-.. ++. ......+|||+|||+|.++..++++. ...+|+|+|+++.|++.|++++
T Consensus 46 G~FfTP~~i~~~--f~~---~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------- 108 (279)
T PHA03411 46 GAFFTPEGLAWD--FTI---DAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------- 108 (279)
T ss_pred eeEcCCHHHHHH--HHh---ccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------
Confidence 456667554322 222 23345799999999999988887654 1268999999999999997642
Q ss_pred CCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchh
Q 002226 769 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED 809 (951)
Q Consensus 769 ~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD 809 (951)
.+++++++|+.++.. ...||+|+++--+.|++.+
T Consensus 109 ------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 109 ------PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred ------cCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 268899999988753 4689999998888887643
No 122
>PTZ00146 fibrillarin; Provisional
Probab=98.56 E-value=4e-07 Score=100.00 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=75.6
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 787 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL- 787 (951)
...++.+|||+|||+|.++..+++...+...|++||+++.|++...+... ...+|.++.+|+...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--------------~r~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--------------KRPNIVPIIEDARYPQ 194 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------------hcCCCEEEECCccChh
Confidence 34567899999999999999999886444689999999876644433221 114788899998642
Q ss_pred --CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 788 --DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 788 --p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
......||+|++... .+++...+..++.++|||| .++|.
T Consensus 195 ~y~~~~~~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhhcccCCCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 123457999988764 2356566666799999999 66664
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.55 E-value=4.1e-07 Score=92.34 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.++.+|||+|||+|.++..+++...+..+|+|+|+++.+ .. .++++.++|+.+.+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----------------~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----------------ENVDFIRGDFTDEEVL 87 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----------------CCceEEEeeCCChhHH
Confidence 577899999999999998888765334689999999854 10 25778888887643
Q ss_pred ------CCCCCccEEEEccc--------cccCch-hHHHHHHHHHHHccCCC-EEEEEecC-CchhHHHH
Q 002226 789 ------SRLHGFDIGTCLEV--------IEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPN-YEYNAILQ 841 (951)
Q Consensus 789 ------~~d~sFDlVVcieV--------LEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPN-sEfN~lf~ 841 (951)
...++||+|++... ++|+.. +....+.+.+.++|+|| .+++..+. .++..++.
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~ 157 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 157 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHH
Confidence 24568999998543 333221 12245556799999998 66664433 33444444
No 124
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.54 E-value=4.3e-07 Score=99.95 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.++++|||+|||+|.++...++.|. .+|+|+|+++.+++.|+++..- ++ -..++.+. ...+ ..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~--N~---------~~~~~~v~--~~~~--~~ 222 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAEL--NG---------VEDRIEVS--LSED--LV 222 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHH--TT----------TTCEEES--CTSC--TC
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHH--cC---------CCeeEEEE--Eecc--cc
Confidence 4668999999999999999999984 6899999999999999987642 11 11244332 2222 22
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...||+|+++-.. +.+..+...+.++|+|| .+|+|-.-
T Consensus 223 ~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 223 EGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp CS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred cccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 4889999986542 44455666789999998 77776543
No 125
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.54 E-value=6.1e-07 Score=103.10 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
..+..++.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|++|++.|++++.. .+..
T Consensus 281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~ 345 (443)
T PRK13168 281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR------------NGLD 345 (443)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCC
Confidence 345566677777766677899999999999999999887 6999999999999999887642 2345
Q ss_pred cEEEEEccccccC----CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 776 SAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 776 nVtf~qGDa~dLp----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
+++++++|+.+.. +....||+|++.---.-+. .+.+.+.+ ++|+ .++++.
T Consensus 346 ~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-----~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 346 NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA-----EVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH-----HHHHHHHh-cCCCeEEEEEe
Confidence 7999999997532 3346799998742111111 12233444 5777 666664
No 126
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.54 E-value=3.1e-07 Score=91.66 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=63.9
Q ss_pred EEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHH
Q 002226 741 VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 820 (951)
Q Consensus 741 VGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~R 820 (951)
+|+|+|++||+.|+++..... .....+++++++|+.++++.+++||+|++..+++|++ +....+ +++.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l-~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---------RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAM-KEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---------ccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHH-HHHHH
Confidence 599999999999987643100 1123479999999999999999999999999999998 554555 57999
Q ss_pred ccCCC-EEEEEecC
Q 002226 821 SFRPR-ILIVSTPN 833 (951)
Q Consensus 821 vLKPG-vLIISTPN 833 (951)
+|||| .++|....
T Consensus 70 vLkpGG~l~i~d~~ 83 (160)
T PLN02232 70 VLKPGSRVSILDFN 83 (160)
T ss_pred HcCcCeEEEEEECC
Confidence 99999 56554443
No 127
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=99.60 Aligned_cols=90 Identities=22% Similarity=0.161 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
|..+...+.+.+.+. ++.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|+++... .+
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~------------~g- 299 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAAD------------LG- 299 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-
Confidence 334444455544443 45699999999999999888654 347899999999999999987642 12
Q ss_pred ccEEEEEccccccCC-CCCCccEEEEc
Q 002226 775 KSAVLFDGSITVFDS-RLHGFDIGTCL 800 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~-~d~sFDlVVci 800 (951)
.+++++++|+.+... ....||+|+|+
T Consensus 300 ~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 300 ARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CcEEEEEcchhccccccCCCccEEEEC
Confidence 379999999866433 24579999994
No 128
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.51 E-value=4.5e-07 Score=100.04 Aligned_cols=118 Identities=20% Similarity=0.284 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc----
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV---- 786 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d---- 786 (951)
.++..++|+|||-|.-+...-+.+ +..++|+||++..++.|++|+....... ....-++.|+.||-..
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~------~~~~f~a~f~~~Dc~~~~l~ 187 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRF------KKFIFTAVFIAADCFKERLM 187 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhh------hcccceeEEEEeccchhHHH
Confidence 367789999999988776555544 4799999999999999999876432211 0122368899988753
Q ss_pred --cCCCCCCccEEEEccccccCc--hhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002226 787 --FDSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 787 --Lp~~d~sFDlVVcieVLEHL~--dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
+++.+..||+|-|.+++|+-- .+.+..++.++.+.|+|| ++|-++|+++.
T Consensus 188 d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 188 DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHH
Confidence 334455699999999998754 455667778999999999 78888998754
No 129
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.49 E-value=6.9e-07 Score=96.18 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+..........+|||+|||+|.....++++.. ..+++|||+++++.+.|++.++- .....+|+++++|
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~l-----------n~l~~ri~v~~~D 103 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVAL-----------NPLEERIQVIEAD 103 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHh-----------CcchhceeEehhh
Confidence 34444555688999999999999999999863 38999999999999999987652 1345689999999
Q ss_pred ccccCCC--CCCccEEEEccc------c----------ccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002226 784 ITVFDSR--LHGFDIGTCLEV------I----------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 841 (951)
Q Consensus 784 a~dLp~~--d~sFDlVVcieV------L----------EHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~ 841 (951)
+.++... ..+||+|+|+== - +|...-....+.+...++|||| .+.+.-|-.....++.
T Consensus 104 i~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~ 180 (248)
T COG4123 104 IKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIE 180 (248)
T ss_pred HHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHH
Confidence 9887642 346999999521 1 2222223456677789999998 5544444333444444
No 130
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.46 E-value=6.4e-06 Score=94.06 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=96.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC--ccEEEEEccccccCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFDS 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~--~nVtf~qGDa~dLp~ 789 (951)
++++|||+|||+|.++..++..+. .+|++||+|+.+++.|++++.. ++. .+++++++|+.+.-.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~------------Ngl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCCCcEEEEEccHHHHHH
Confidence 578999999999999887665542 6899999999999999987652 222 379999999977521
Q ss_pred ----CCCCccEEEEcccc---c--cCch--hHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhhh
Q 002226 790 ----RLHGFDIGTCLEVI---E--HMEE--DEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 858 (951)
Q Consensus 790 ----~d~sFDlVVcieVL---E--HL~d--D~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~ 858 (951)
....||+|++.==- . .+.. .....+.....++|+||+++++.-++.
T Consensus 286 ~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~----------------------- 342 (396)
T PRK15128 286 TYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG----------------------- 342 (396)
T ss_pred HHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC-----------------------
Confidence 24579999985110 0 0000 112233345789999995444322321
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCC
Q 002226 859 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSG 901 (951)
Q Consensus 859 ~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p 901 (951)
..+.++|.....+.+.+.|-.+.+.+.+..+
T Consensus 343 ------------~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~ 373 (396)
T PRK15128 343 ------------LMTSDLFQKIIADAAIDAGRDVQFIEQFRQA 373 (396)
T ss_pred ------------cCCHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence 1356788888878888888888877766544
No 131
>PLN02366 spermidine synthase
Probab=98.45 E-value=1.8e-06 Score=95.49 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
..+++||+||||.|..++.++++. +..+|+.||+++.+++.|++.+..... ....++++++.+|+...-.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~--------~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV--------GFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc--------ccCCCceEEEEChHHHHHhh
Confidence 457899999999999999999885 457999999999999999887642100 1134689999999865421
Q ss_pred -CCCCccEEEEccccccCchhH--HHHHHHHHHHccCCCEEEE
Q 002226 790 -RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 -~d~sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPGvLII 829 (951)
..+.||+|++-..-.+.+... -..|.+.+.+.|+||++++
T Consensus 161 ~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 246799999854332222111 1355677999999995554
No 132
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.2e-06 Score=94.40 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
--+.+++.+......+|||+|||.|.++..+++.. +..+++-+|++..+++.|++++.. ++..+..+
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~------------N~~~~~~v 212 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAA------------NGVENTEV 212 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHH------------cCCCccEE
Confidence 44567777777767799999999999999999988 578999999999999999998763 23334466
Q ss_pred EEccccccCCCCCCccEEEEcccccc---CchhHHHHHHHHHHHccCCC
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieVLEH---L~dD~l~~L~eeL~RvLKPG 825 (951)
+..|+.+--. + +||+|+|+==+|- +..+....|.+...+.|++|
T Consensus 213 ~~s~~~~~v~-~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 213 WASNLYEPVE-G-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred EEeccccccc-c-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 7777654332 2 9999999754442 22233346667799999998
No 133
>PRK04457 spermidine synthase; Provisional
Probab=98.44 E-value=1.5e-06 Score=93.88 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+++|||||||.|.++..+++.. +..++++||+++++++.|++.+.. .....+++++.+|+.+. ..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~-----------~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFEL-----------PENGERFEVIEADGAEYIAV 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCC-----------CCCCCceEEEECCHHHHHHh
Confidence 457899999999999999998776 457999999999999999876531 11235899999998664 22
Q ss_pred CCCCccEEEEccc-cccCchhH-HHHHHHHHHHccCCC-EEEEEec
Q 002226 790 RLHGFDIGTCLEV-IEHMEEDE-ASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 790 ~d~sFDlVVcieV-LEHL~dD~-l~~L~eeL~RvLKPG-vLIISTP 832 (951)
...+||+|++-.. -..++... ...|.+.+.+.|+|| .+++...
T Consensus 133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 2468999987421 11222111 145666799999999 6655433
No 134
>PHA03412 putative methyltransferase; Provisional
Probab=98.43 E-value=1.8e-06 Score=92.60 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=79.6
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHHhhhhcccccC
Q 002226 691 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 768 (951)
Q Consensus 691 ~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~--~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l 768 (951)
.|+-|..-.|+-. .. ...+.+|||+|||+|.++..+++... +..+|+|||+++.+++.|++++
T Consensus 32 qFfTP~~iAr~~~-i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------- 96 (241)
T PHA03412 32 AFFTPIGLARDFT-ID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------- 96 (241)
T ss_pred ccCCCHHHHHHHH-Hh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------
Confidence 3555555544322 22 22467999999999999998876421 1368999999999999998642
Q ss_pred CCCCCCccEEEEEccccccCCCCCCccEEEEccc---cc-------cCchhHHHHHHHHHHHccCCCEEEEE
Q 002226 769 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV---IE-------HMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 769 ~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieV---LE-------HL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
.++.+.++|+...++ +..||+|+++== +. |-.......|.+...+++++|.+|++
T Consensus 97 ------~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 97 ------PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred ------cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 257899999987654 468999999521 11 11112234456667788999976553
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=3.5e-06 Score=98.79 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=75.4
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... +...+++++++|+.+. ...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~-----------~l~~~v~~~~~D~~~~-~~~ 204 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKY-----------EVTDRIQIIHSNWFEN-IEK 204 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc-----------CCccceeeeecchhhh-CcC
Confidence 34689999999999999888654 3479999999999999999876421 1124789999998642 234
Q ss_pred CCccEEEEc--------------cccccCc-------h---hHHHHHHHHHHHccCCC-EEEEEec
Q 002226 792 HGFDIGTCL--------------EVIEHME-------E---DEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 792 ~sFDlVVci--------------eVLEHL~-------d---D~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..||+|+|+ +++.|-+ . +....+.+.+.++|+|| .+++..-
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 689999993 1222221 1 12234556678899999 5555543
No 136
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.40 E-value=3.2e-06 Score=89.46 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=98.5
Q ss_pred CCCEEEEEcCccchhHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LA-k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
...+.||.|+|.|+.+..++ +.+ .+|.-||..+..++.|++.+.. ....-.++++..+.++.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~------------~~~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGK------------DNPRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCC------------GGCCEEEEEES-GGG----
T ss_pred CcceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcc------------cCCCcceEEecCHhhccCC
Confidence 45789999999999998664 544 7999999999999999876532 1223468899999998877
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCCcc
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 870 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DHkF 870 (951)
...||+|.+.+++-|+.++++-.|.+.+...|+|+++||.--|-.-.. ...+...|...
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~---------------------~~~~D~~DsSv 178 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG---------------------FDEFDEEDSSV 178 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS---------------------EEEEETTTTEE
T ss_pred CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC---------------------CcccCCccCee
Confidence 789999999999999999999899899999999996666544421110 01133345544
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002226 871 EWTRDQFNCWATELAARHNYSVEFSGV 897 (951)
Q Consensus 871 EWTreEFqaWae~LA~r~GYsVEf~GV 897 (951)
--+.+.|+ .+.+++|+.+...-.
T Consensus 179 TRs~~~~~----~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 179 TRSDEHFR----ELFKQAGLRLVKEEK 201 (218)
T ss_dssp EEEHHHHH----HHHHHCT-EEEEEEE
T ss_pred ecCHHHHH----HHHHHcCCEEEEecc
Confidence 45566677 678889999866443
No 137
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.39 E-value=1.9e-06 Score=90.50 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=81.6
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
+.......+.++|+|||+|.|.++..+++.. |..+++.+|. +..++.+++ ..+|++..||
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------------------~~rv~~~~gd 151 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------------------ADRVEFVPGD 151 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------------------TTTEEEEES-
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------------------cccccccccc
Confidence 3444455567899999999999999999887 5679999997 888888865 1489999999
Q ss_pred ccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC---EEEEE
Q 002226 784 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR---ILIVS 830 (951)
Q Consensus 784 a~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG---vLIIS 830 (951)
+. -+++. +|+++...+||+.++++...+.+++++.|+|| .++|.
T Consensus 152 ~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 152 FF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred HH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 98 33333 99999999999999999999999999999976 55553
No 138
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.39 E-value=3.6e-06 Score=88.21 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
...+.--+++..+++..++++||||||+.|+-+.+|++..++..+|+.+|++++..+.|++.+... +..
T Consensus 28 ~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----------g~~ 96 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----------GLD 96 (205)
T ss_dssp SHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----------TGG
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----------CCC
Confidence 455555566666666678999999999999999999986545689999999999999999877632 223
Q ss_pred ccEEEEEccccccCC------CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcc
Q 002226 775 KSAVLFDGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQ 848 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~------~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~ 848 (951)
.+|+++.||+.+.-. ..+.||+|+.-. -...- ..+.+.+.++|+||.+||.. |.++....
T Consensus 97 ~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa----~K~~y-~~y~~~~~~ll~~ggvii~D-----N~l~~G~V---- 162 (205)
T PF01596_consen 97 DRIEVIEGDALEVLPELANDGEEGQFDFVFIDA----DKRNY-LEYFEKALPLLRPGGVIIAD-----NVLWRGSV---- 162 (205)
T ss_dssp GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES----TGGGH-HHHHHHHHHHEEEEEEEEEE-----TTTGGGGG----
T ss_pred CcEEEEEeccHhhHHHHHhccCCCceeEEEEcc----cccch-hhHHHHHhhhccCCeEEEEc-----ccccccee----
Confidence 589999999976311 135799997543 33223 34445688999999666543 23333221
Q ss_pred CCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002226 849 EDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 899 (951)
Q Consensus 849 ~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~ 899 (951)
..+++...-+ ..++.+.+.+...-.+...+..+|+
T Consensus 163 ---------------~~~~~~~~~~-~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 163 ---------------ADPDDEDPKT-VAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp ---------------GSTTGGSHHH-HHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred ---------------cCccchhhhH-HHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 0111111111 1244444456666688888888886
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.39 E-value=3.1e-06 Score=91.39 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~ 789 (951)
..+++||+||||+|.++..++++. +..+++++|+++++++.|++.+..... ....+++++..+|+.+. ..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--------~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--------SYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--------cccCCceEEEECchHHHHHh
Confidence 356799999999999999888875 357899999999999999886542110 11235788888887653 22
Q ss_pred CCCCccEEEEccccccCchhH--HHHHHHHHHHccCCC-EEEEE
Q 002226 790 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPG-vLIIS 830 (951)
..+.||+|++...-..-+... ...+.+.+.+.|+|| .+++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 246899999854321111111 235556799999999 44443
No 140
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.37 E-value=1.6e-06 Score=92.91 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=68.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-.+.+.+.+...++.+|||||||.|.++..+++.+ .+|+|+|+++.+++.+++++. ...++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~--------------~~~~v~i 79 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEI--------------AAGNVEI 79 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhc--------------cCCCEEE
Confidence 34456666666678899999999999999999986 689999999999999987653 1347999
Q ss_pred EEccccccCCCCCCccEEEEccc
Q 002226 780 FDGSITVFDSRLHGFDIGTCLEV 802 (951)
Q Consensus 780 ~qGDa~dLp~~d~sFDlVVcieV 802 (951)
+++|+.+++++ .||.|+++--
T Consensus 80 i~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 80 IEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred EEeccccCCch--hceEEEEcCC
Confidence 99999887754 5899988644
No 141
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.36 E-value=1.1e-06 Score=95.01 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=66.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++. . .+++++
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~--------------~-~~v~~i 92 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA--------------E-DNLTII 92 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc--------------c-CceEEE
Confidence 3456666666678899999999999999999987 589999999999999987542 1 479999
Q ss_pred EccccccCCCCCCccEEEEc
Q 002226 781 DGSITVFDSRLHGFDIGTCL 800 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVci 800 (951)
++|+.++++.+..+|.|+++
T Consensus 93 ~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 93 EGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred EChhhcCCHHHcCcceEEEe
Confidence 99999887653225777765
No 142
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.36 E-value=3.2e-06 Score=88.24 Aligned_cols=119 Identities=10% Similarity=0.028 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002226 698 KQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 698 ~QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
+.-++.+.+.+.. ..+.+|||+|||+|.++..++.++. .+|+++|+++.+++.+++++.. .+..+
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~------------~~~~~ 103 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLAT------------LKAGN 103 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------hCCCc
Confidence 3334455555532 4567999999999999986544442 6999999999999999887652 23347
Q ss_pred EEEEEccccccC-CCCCCccEEEEccccccCchhHHHHHHHHHH--HccCCC-EEEEEecC
Q 002226 777 AVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPN 833 (951)
Q Consensus 777 Vtf~qGDa~dLp-~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~--RvLKPG-vLIISTPN 833 (951)
++++++|+.+.- .....||+|++.==... .......+.+. ++|+|+ .+++..+.
T Consensus 104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 104 ARVVNTNALSFLAQPGTPHNVVFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEEchHHHHHhhcCCCceEEEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 999999987632 22346999998643211 11112222233 447888 66776554
No 143
>PLN02476 O-methyltransferase
Probab=98.35 E-value=4.3e-06 Score=91.52 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 696 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
..+...+++.-++...++++|||||+|+|..+.++++..++..+|+.+|.+++..+.|++.+... +...
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-----------Gl~~ 170 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-----------GVSH 170 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCC
Confidence 34444455555556668899999999999999999875434468999999999999999887632 2235
Q ss_pred cEEEEEccccccCC------CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccC
Q 002226 776 SAVLFDGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQE 849 (951)
Q Consensus 776 nVtf~qGDa~dLp~------~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~ 849 (951)
+|++..||+.+.-. ....||+|+.-.- . +.-..+.+.+.+.|+||++|+.. |.+|..... .
T Consensus 171 ~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~----K-~~Y~~y~e~~l~lL~~GGvIV~D-----NvL~~G~V~--d- 237 (278)
T PLN02476 171 KVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD----K-RMYQDYFELLLQLVRVGGVIVMD-----NVLWHGRVA--D- 237 (278)
T ss_pred cEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC----H-HHHHHHHHHHHHhcCCCcEEEEe-----cCccCCccc--C-
Confidence 89999999976321 1357999975432 2 33345556788999999555542 223332100 0
Q ss_pred CCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002226 850 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 899 (951)
Q Consensus 850 eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~ 899 (951)
+ ...+.+ ...++.+.+.+...-.|...+..+|+
T Consensus 238 ------------~-~~~d~~----t~~ir~fn~~v~~d~~~~~~llPigD 270 (278)
T PLN02476 238 ------------P-LVNDAK----TISIRNFNKKLMDDKRVSISMVPIGD 270 (278)
T ss_pred ------------c-ccCCHH----HHHHHHHHHHHhhCCCEEEEEEEeCC
Confidence 0 001111 12455555566777789988888886
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=98.34 E-value=3.7e-06 Score=95.09 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr--Lsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
...+++||+||||+|..++.++++. +..+|++||+++++++.|++. +.. ... -....++++++.+|+.++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~-~~~------~~~~DpRV~vvi~Da~~f 219 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVS-LNK------SAFFDNRVNVHVCDAKEF 219 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccch-hcc------ccCCCCceEEEECcHHHH
Confidence 3467899999999999999999875 467999999999999999851 110 000 011346899999999874
Q ss_pred -CCCCCCccEEEEccc--cc-cCchhHHHHHHHHHHHccCCCEEEEEe
Q 002226 788 -DSRLHGFDIGTCLEV--IE-HMEEDEASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 788 -p~~d~sFDlVVcieV--LE-HL~dD~l~~L~eeL~RvLKPGvLIIST 831 (951)
......||+|++-.. .. +...-.-..|.+.+.+.|+||++++..
T Consensus 220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 334568999998631 11 111111134567799999999555544
No 145
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=2.5e-06 Score=91.29 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=108.4
Q ss_pred CEEEEEcCccchhHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc----cC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV----FD 788 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~-~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d----Lp 788 (951)
.+||+||||.|.....+.+..+ +.-.|++.|.|+.+++..+++.. ....++.-...|+.. -+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-------------~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-------------YDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-------------cchhhhcccceeccchhccCC
Confidence 3899999999999998887652 22689999999999999876421 112234333344432 23
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccC-C
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN-H 866 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh-~ 866 (951)
...+++|+|++++||.-++++.+...++++.++|||| .+++-.-. .+.-...++.....-. .....|. .
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg-~~DlaqlRF~~~~~i~--------~nfYVRgDG 210 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG-RYDLAQLRFKKGQCIS--------ENFYVRGDG 210 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc-cchHHHHhccCCceee--------cceEEccCC
Confidence 4568999999999999999999988889999999999 44443222 2222222221100000 0111222 2
Q ss_pred CCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCCCCC
Q 002226 867 DHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPE 921 (951)
Q Consensus 867 DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR~~~~~ 921 (951)
...++|+.+++..|. .+.||..+ ...++-.+.|+|++..+.
T Consensus 211 T~~YfF~~eeL~~~f----~~agf~~~----------~~~~~~rl~vNr~k~lkm 251 (264)
T KOG2361|consen 211 TRAYFFTEEELDELF----TKAGFEEV----------QLEVDCRLLVNRKKQLKM 251 (264)
T ss_pred ceeeeccHHHHHHHH----Hhcccchh----------cccceeeeeeehhccCcc
Confidence 234789999999764 44555432 234455667777654443
No 146
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.33 E-value=8.5e-06 Score=85.68 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=103.9
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-----
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----- 789 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~----- 789 (951)
+|||||||+|..+.++++.. +.....--|+++..+...+..+..... .+-...+. -|+.+.+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~--------~Nv~~P~~---lDv~~~~w~~~~~ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL--------PNVRPPLA---LDVSAPPWPWELP 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC--------cccCCCeE---eecCCCCCccccc
Confidence 69999999999999999988 456777889998887665554432110 01111222 23333221
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC-------chhHHHHhhccCccCCCCchhhhh
Q 002226 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY-------EYNAILQKSSSTIQEDDPDEKTQL 858 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs-------EfN~lf~~L~~~~~~eYPde~~~~ 858 (951)
....||+|+|..++|-++-.....+++.+.++|+|| .+++--|-. +-|..|..
T Consensus 96 ~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~---------------- 159 (204)
T PF06080_consen 96 APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDA---------------- 159 (204)
T ss_pred cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHH----------------
Confidence 245899999999999999888888888899999999 888877732 23333332
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeec
Q 002226 859 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRS 916 (951)
Q Consensus 859 ~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GVG~~p~ge~G~~TQIAVFrR 916 (951)
+..-|++ +|--.++. |+..++.++|+..+- +-+-|. --++-||+|
T Consensus 160 -sLr~rdp----~~GiRD~e-~v~~lA~~~GL~l~~--~~~MPA-----NN~~Lvfrk 204 (204)
T PF06080_consen 160 -SLRSRDP----EWGIRDIE-DVEALAAAHGLELEE--DIDMPA-----NNLLLVFRK 204 (204)
T ss_pred -HHhcCCC----CcCccCHH-HHHHHHHHCCCccCc--ccccCC-----CCeEEEEeC
Confidence 2223333 24444444 566889999987532 222232 137788876
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.32 E-value=4.1e-06 Score=95.73 Aligned_cols=113 Identities=17% Similarity=0.255 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
...++.+.+.+...++.+|||+|||+|.++..|++.. .+|+|+|+++.+++.|++++.. .+..++
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~------------~~~~nv 342 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAEL------------NGIANV 342 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHH------------hCCCce
Confidence 3344556666655667899999999999999999876 6899999999999999987642 234589
Q ss_pred EEEEcccccc----CCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 778 VLFDGSITVF----DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 778 tf~qGDa~dL----p~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+++++|+.+. +.....||+|++.--=.-+. ..+.+.+. .++|+ .++++
T Consensus 343 ~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~----~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 343 EFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA----AEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred EEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC----HHHHHHHH-hcCCCEEEEEc
Confidence 9999999763 12345799998632211111 23333333 47888 44454
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.28 E-value=6.6e-06 Score=92.96 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+.+.+...++.+|||+|||+|.++..++..+ .+|+|||+++.+++.|++++.. .+..+++++.
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~------------~~~~~~~~~~ 287 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQM------------LGLDNLSFAA 287 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEE
Confidence 344455444456899999999999999999776 6899999999999999887642 2334899999
Q ss_pred ccccccCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 782 GSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 782 GDa~dLp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+|+.+.... ...||+|++.==-..+. ..+.+.+. .++|+ .++++
T Consensus 288 ~d~~~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 288 LDSAKFATAQMSAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCHHHHHHhcCCCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEE
Confidence 999765422 24699998752222222 12223233 46888 55554
No 149
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=4.6e-06 Score=86.70 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=66.6
Q ss_pred HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002226 707 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 707 lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
......+++|+|+|||+|.++...+-.++ ..|+|||+++++++.++++... ...++.|+.+|+.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-------------l~g~v~f~~~dv~~ 104 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-------------LLGDVEFVVADVSD 104 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-------------hCCceEEEEcchhh
Confidence 44566888999999999999998888875 8999999999999999987653 33479999999988
Q ss_pred cCCCCCCccEEEEc----cccccCc
Q 002226 787 FDSRLHGFDIGTCL----EVIEHME 807 (951)
Q Consensus 787 Lp~~d~sFDlVVci----eVLEHL~ 807 (951)
+. ..||.|+++ -...|-+
T Consensus 105 ~~---~~~dtvimNPPFG~~~rhaD 126 (198)
T COG2263 105 FR---GKFDTVIMNPPFGSQRRHAD 126 (198)
T ss_pred cC---CccceEEECCCCccccccCC
Confidence 75 568888774 2356633
No 150
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.26 E-value=6e-06 Score=88.07 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002226 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.-.+.+.+.+...++.+|||||||+|.++..|++.+ ..|+|+|+++.+++.+++++. ...+++
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~--------------~~~~v~ 78 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS--------------LYERLE 78 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC--------------cCCcEE
Confidence 344566666666778899999999999999999988 579999999999999987542 134799
Q ss_pred EEEccccccCCCCCCcc---EEEEc
Q 002226 779 LFDGSITVFDSRLHGFD---IGTCL 800 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFD---lVVci 800 (951)
+.++|+.+.++. .|| +|+++
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEc
Confidence 999999988764 455 55443
No 151
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=5.7e-06 Score=89.22 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
.+|+.-..++...+...++.+|||.|.|+|.++.+|++..++..+|+.+|+.++.++.|+++++.. +..
T Consensus 77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-----------~l~ 145 (256)
T COG2519 77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-----------GLG 145 (256)
T ss_pred eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------ccc
Confidence 455555668888888999999999999999999999976556789999999999999999998753 122
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.++++..+|+.+.-+.+ .||+|+.- ++ ++...+ +.+...|+|| .+++-+|+.+
T Consensus 146 d~v~~~~~Dv~~~~~~~-~vDav~LD-----mp-~PW~~l-e~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 146 DRVTLKLGDVREGIDEE-DVDAVFLD-----LP-DPWNVL-EHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cceEEEecccccccccc-ccCEEEEc-----CC-ChHHHH-HHHHHHhCCCcEEEEEcCCHH
Confidence 34999999998877665 99999752 34 444455 4699999999 8888888854
No 152
>PRK03612 spermidine synthase; Provisional
Probab=98.22 E-value=6.4e-06 Score=96.93 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HHhhhhcccccCCCCCCCccEEEEEcccccc-
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 787 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr--Lsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL- 787 (951)
.++++|||||||+|..++.++++. +..+|++||+++++++.|++. +...... .-..++++++.+|+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-------~~~dprv~vi~~Da~~~l 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGG-------ALDDPRVTVVNDDAFNWL 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhcc-------ccCCCceEEEEChHHHHH
Confidence 357899999999999999999874 347999999999999999872 2210000 01235899999999874
Q ss_pred CCCCCCccEEEEccccccCchh-H--HHHHHHHHHHccCCC-EEEEEe
Q 002226 788 DSRLHGFDIGTCLEVIEHMEED-E--ASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 788 p~~d~sFDlVVcieVLEHL~dD-~--l~~L~eeL~RvLKPG-vLIIST 831 (951)
....++||+|++...-.+.+.. . -..|.+.+.+.|+|| .+++.+
T Consensus 368 ~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 2234689999986432221110 0 124556799999999 555543
No 153
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.21 E-value=5.4e-06 Score=91.21 Aligned_cols=84 Identities=15% Similarity=0.304 Sum_probs=67.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+++.+...++.+|||||||.|.++..+++.+ .+|+|+|+++.+++.+++++... ....+++++
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~-----------~~~~~v~ii 90 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNS-----------PLASKLEVI 90 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhc-----------CCCCcEEEE
Confidence 3456666666678899999999999999999876 68999999999999999876421 123589999
Q ss_pred EccccccCCCCCCccEEEEc
Q 002226 781 DGSITVFDSRLHGFDIGTCL 800 (951)
Q Consensus 781 qGDa~dLp~~d~sFDlVVci 800 (951)
++|+.+.+. ..||.|+++
T Consensus 91 ~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred ECCHhhhcc--cccCEEEec
Confidence 999987764 468988874
No 154
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.21 E-value=9.3e-06 Score=83.05 Aligned_cols=136 Identities=19% Similarity=0.166 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCc--------eEEEEeCChHHHHHHHHHHHhhhhcccc
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALE--------KIVGVDISQKSLSRAAKIIHSKLSKKLD 766 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~--------qVVGVDISeemLe~ArkrLsa~ls~~~~ 766 (951)
|+.+.--..++.+....++..|||--||+|.++...+..+.... +++|.|+++++++.|++++...
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a------ 84 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA------ 84 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc------
Confidence 66666666677777777888999999999999976654432112 3899999999999999887632
Q ss_pred cCCCCCCCccEEEEEccccccCCCCCCccEEEEcccccc-Cc-----hhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002226 767 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEH-ME-----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 840 (951)
Q Consensus 767 ~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEH-L~-----dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf 840 (951)
+....+.+.++|+.++++..+.+|+|++.-=.-. +. .+--..|.+++.+++++..+++++.+.++...+
T Consensus 85 -----g~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~~ 159 (179)
T PF01170_consen 85 -----GVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKAL 159 (179)
T ss_dssp -----T-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHHH
T ss_pred -----ccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHh
Confidence 2234689999999999977789999999521110 11 122245667788999998777777877776655
Q ss_pred H
Q 002226 841 Q 841 (951)
Q Consensus 841 ~ 841 (951)
.
T Consensus 160 ~ 160 (179)
T PF01170_consen 160 G 160 (179)
T ss_dssp T
T ss_pred c
Confidence 4
No 155
>PRK04148 hypothetical protein; Provisional
Probab=98.19 E-value=1.9e-05 Score=78.24 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+++.+.+...++.+|||||||.|. ++..|++.+ .+|+|+|+++..++.++++ .++++
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~-------------------~~~~v 63 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL-------------------GLNAF 63 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh-------------------CCeEE
Confidence 466666666667899999999996 888898887 8999999999999988653 36788
Q ss_pred EccccccCCC-CCCccEEEEccc
Q 002226 781 DGSITVFDSR-LHGFDIGTCLEV 802 (951)
Q Consensus 781 qGDa~dLp~~-d~sFDlVVcieV 802 (951)
.+|+.+.+.. -..+|+|.++--
T Consensus 64 ~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 64 VDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred ECcCCCCCHHHHhcCCEEEEeCC
Confidence 9999887765 468999998754
No 156
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=6.2e-06 Score=90.09 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=56.9
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCc
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 794 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sF 794 (951)
+|||+|||+|..+..++... +..+|+|+|+|+.+++.|+++... .+..++.++++|+.+- -.+.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~------------~~l~~~~~~~~dlf~~--~~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAER------------NGLVRVLVVQSDLFEP--LRGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHH------------cCCccEEEEeeecccc--cCCce
Confidence 89999999999999999988 457999999999999999987652 2335677777765432 23489
Q ss_pred cEEEEc
Q 002226 795 DIGTCL 800 (951)
Q Consensus 795 DlVVci 800 (951)
|+|+|+
T Consensus 178 DlIVsN 183 (280)
T COG2890 178 DLIVSN 183 (280)
T ss_pred eEEEeC
Confidence 999995
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=6.1e-06 Score=100.27 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=75.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-CC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~~ 790 (951)
++++|||+|||+|.++..+++.+. .+|++||+|+.+++.|++++... + ....+++++++|+.+.- ..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~n--g--------~~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALN--G--------LSGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHh--C--------CCccceEEEEccHHHHHHHc
Confidence 578999999999999999998763 57999999999999999886521 0 01137999999987632 12
Q ss_pred CCCccEEEEcc---c----cccCc--hhHHHHHHHHHHHccCCCEEEEEecC
Q 002226 791 LHGFDIGTCLE---V----IEHME--EDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 791 d~sFDlVVcie---V----LEHL~--dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
...||+|++.- . .+.+. ......+...+.++|+||++++...+
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 46899999841 0 00110 01223445568899999944443333
No 158
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.15 E-value=1e-05 Score=90.43 Aligned_cols=110 Identities=16% Similarity=0.080 Sum_probs=78.7
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
..+++.|||||||+|.+...-++.|. .+|+|||.|.- .+.|++.+... +....|++++|.+++...
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~i-a~~a~~iv~~N-----------~~~~ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSI-ADFARKIVKDN-----------GLEDVITVIKGKVEDIEL 123 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHH-HHHHHHHHHhc-----------CccceEEEeecceEEEec
Confidence 35789999999999999999999885 89999997664 48887765421 122358999999999877
Q ss_pred CCCCccEEEEccccccCch-hHHHHHHHHHHHccCCCEEEEEecC
Q 002226 790 RLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
+..+.|+|++-++=..+-- .-+....-.=-++|+||++++++-.
T Consensus 124 P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 7789999999665443331 1122222222578999977765543
No 159
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.12 E-value=8.2e-06 Score=84.72 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=82.2
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-C--CC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D--SR 790 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p--~~ 790 (951)
..+||||||.|.++..+|+.. +...++|||+....+..|.+++.. .+..|+.++++|+..+ . +.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~------------~~l~Nv~~~~~da~~~l~~~~~ 85 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK------------RGLKNVRFLRGDARELLRRLFP 85 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH------------HTTSSEEEEES-CTTHHHHHST
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh------------hcccceEEEEccHHHHHhhccc
Confidence 389999999999999999887 568999999999999999887653 2557999999999872 2 34
Q ss_pred CCCccEEEEccccccCchh------HHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002226 791 LHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 841 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~ 841 (951)
++++|.|...+-=-|.... ....|.+.+.++|+|| .+.+.|-+.+|-....
T Consensus 86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~ 143 (195)
T PF02390_consen 86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWML 143 (195)
T ss_dssp TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHH
T ss_pred CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 6788888765432222110 1146667899999999 8888888877765443
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.11 E-value=1.9e-05 Score=82.47 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchhHHH----Hhc---C-CCCCceEEEEeCChHHHHHHHHHH------H---h-hhhccc-ccCCCC-
Q 002226 712 CATTLVDFGCGSGSLLDS----LLD---Y-PTALEKIVGVDISQKSLSRAAKII------H---S-KLSKKL-DAAVPC- 771 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~----LAk---~-g~~~~qVVGVDISeemLe~ArkrL------s---a-~ls~~~-~~l~Pr- 771 (951)
+.-+|+..||++|.=... |.+ . .+...+|+|.|||+.+|+.|++-. . . ....+- ......
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456999999999984432 223 1 211369999999999999998510 0 0 000000 000000
Q ss_pred ----CCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002226 772 ----TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 772 ----~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
.-...|+|.+.|+.+.+...+.||+|+|-+|+-|+.++....+.+.+.+.|+||++++..+.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 01237999999999955567899999999999999998888888999999999955554443
No 161
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.10 E-value=2.5e-05 Score=84.66 Aligned_cols=93 Identities=19% Similarity=0.366 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
...++||||.|.|..+..|+... .+|++.|+|..|..+-+++ ..+++ +..+....+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k-------------------g~~vl--~~~~w~~~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK-------------------GFTVL--DIDDWQQTD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC-------------------CCeEE--ehhhhhccC
Confidence 56789999999999999999887 7899999999997665442 12222 222333345
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
..||+|.|.++|..-. ++...+ +.+.+.|+|+ .+|++
T Consensus 150 ~~fDvIscLNvLDRc~-~P~~LL-~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCD-RPLTLL-RDIRRALKPNGRLILA 187 (265)
T ss_pred CceEEEeehhhhhccC-CHHHHH-HHHHHHhCCCCEEEEE
Confidence 6899999999999988 554555 5699999998 55443
No 162
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=1.3e-05 Score=88.13 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=81.6
Q ss_pred CCCEEEEEcCccchhHH----HHhcCC---CCCceEEEEeCChHHHHHHHHHHHh----------hhhcccc--------
Q 002226 712 CATTLVDFGCGSGSLLD----SLLDYP---TALEKIVGVDISQKSLSRAAKIIHS----------KLSKKLD-------- 766 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~----~LAk~g---~~~~qVVGVDISeemLe~ArkrLsa----------~ls~~~~-------- 766 (951)
..-+|+..||++|.=.. .+.+.. ....+|+|+|||..+|+.|++-.=. ....+-.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999998432 222321 1136899999999999999863100 0000000
Q ss_pred --cCCCCCCCccEEEEEccccccCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002226 767 --AAVPCTDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 767 --~l~Pr~~~~nVtf~qGDa~dLp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
.+.| .-...|+|.+.|+.+.+++ .+.||+|+|.+|+.|++++....+.+.+.+.|+||++++.-+
T Consensus 195 ~~~v~~-~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQ-ELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEECh-HHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0000 0124689999999885543 578999999999999998888888888999999995444433
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.06 E-value=2.6e-05 Score=83.19 Aligned_cols=113 Identities=14% Similarity=0.227 Sum_probs=66.5
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002226 700 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 700 R~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.+..+.+.+.. .++++|||+|||+|.++..+++.+. .+|+|+|++..|+....+. .++... ....+++
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-~~~v~~--------~~~~ni~ 130 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-DERVKV--------LERTNIR 130 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-CCCeeE--------eecCCcc
Confidence 33334444432 4677999999999999999999863 7899999999988763221 100000 0111222
Q ss_pred EEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002226 779 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.-+..+.+.....||+++++..+ +...+.+.|+|+ .+++.-|-+|
T Consensus 131 --~~~~~~~~~d~~~~DvsfiS~~~----------~l~~i~~~l~~~~~~~L~KPqFE 176 (228)
T TIGR00478 131 --YVTPADIFPDFATFDVSFISLIS----------ILPELDLLLNPNDLTLLFKPQFE 176 (228)
T ss_pred --cCCHhHcCCCceeeeEEEeehHh----------HHHHHHHHhCcCeEEEEcChHhh
Confidence 12222332233467877665542 123577888887 5555566543
No 164
>PLN02672 methionine S-methyltransferase
Probab=98.04 E-value=2.3e-05 Score=98.64 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhc-c--cccCC-CCCCCccEEEEEccccccC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK-K--LDAAV-PCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~-~--~~~l~-Pr~~~~nVtf~qGDa~dLp 788 (951)
+.+|||+|||+|..+..+++.. +..+|+|+|+|+++++.|++++....-+ . ..+.. ......+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999876 3469999999999999998876521100 0 00000 0012247999999997654
Q ss_pred CC-CCCccEEEEc
Q 002226 789 SR-LHGFDIGTCL 800 (951)
Q Consensus 789 ~~-d~sFDlVVci 800 (951)
.. ...||+||++
T Consensus 198 ~~~~~~fDlIVSN 210 (1082)
T PLN02672 198 RDNNIELDRIVGC 210 (1082)
T ss_pred cccCCceEEEEEC
Confidence 22 2369999994
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.03 E-value=4.1e-05 Score=81.37 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+.--+++..++...++++|||||.+.|+.+.+|+...+...+++.+|+++++.+.|++.+... +-..+|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-----------g~~~~i 113 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-----------GVDDRI 113 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-----------CCcceE
Confidence 555567777777789999999999999999999987744689999999999999999988642 233458
Q ss_pred EEEE-ccccccCC--CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002226 778 VLFD-GSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 778 tf~q-GDa~dLp~--~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
+++. ||+.+.-. ..++||+|+.- |=. ..-..+.+.+.++|+||.+|+.
T Consensus 114 ~~~~~gdal~~l~~~~~~~fDliFID----adK-~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 114 ELLLGGDALDVLSRLLDGSFDLVFID----ADK-ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEecCcHHHHHHhccCCCccEEEEe----CCh-hhCHHHHHHHHHHhCCCcEEEE
Confidence 8888 57765433 36899999643 333 3334555678999999966554
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.00 E-value=6e-05 Score=76.60 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred ChhHHHHHHHHHHH------hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccccc
Q 002226 694 PPLSKQRVEYALQH------IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 767 (951)
Q Consensus 694 PPL~~QR~e~Vldl------L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~ 767 (951)
+|-..---+|+.+. ....++++|||||||.|..+..+++.. ...+|+..|.++ .++..+.++.....
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~----- 93 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS----- 93 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc-----
Confidence 34444444555553 345678999999999999999998882 237999999998 88888777653210
Q ss_pred CCCCCCCccEEEEEccccccC----CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 768 AVPCTDVKSAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 768 l~Pr~~~~nVtf~qGDa~dLp----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
....++.+...+..+.. .....||+|++.+++..- +....|.+.+.++|+|+ .++++.+.
T Consensus 94 ----~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 94 ----LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp ----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ----cccccccCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 12346777776664411 134689999999999863 44566777899999998 66666554
No 167
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.96 E-value=2.9e-05 Score=81.64 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 694 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
.++...-...+++.++..+....+|||||.|......+-.. ...+.+||++.+...+.|.............. ...
T Consensus 24 GEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~---g~~ 99 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHY---GKR 99 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC---TB-
T ss_pred eecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHh---hcc
Confidence 34455555566777777788899999999999987666444 23569999999998888765433221111000 123
Q ss_pred CccEEEEEccccccCCC---CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002226 774 VKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~---d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
..++++.+||+.+.+.. ...-|+|+++.+. ++++....+. .++.-||+|..||++..
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~-~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALA-ELLLELKPGARIISTKP 159 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHH-HHHTTS-TT-EEEESS-
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHH-HHHhcCCCCCEEEECCC
Confidence 45889999998775532 2457999998874 5655555664 57888999966667654
No 168
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.95 E-value=5.1e-05 Score=82.00 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 694 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
.-+|+.-..+++..+...++.+|||.|.|+|.++..|++..++..+|+..|+.++..+.|++++... +.
T Consensus 22 QIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----------gl 90 (247)
T PF08704_consen 22 QIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----------GL 90 (247)
T ss_dssp ----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----------TC
T ss_pred ceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----------CC
Confidence 3577777889999999999999999999999999999986656789999999999999999987642 23
Q ss_pred CccEEEEEccccccCCC---CCCccEEEEccccccCchhHHHHHHHHHHHcc-CCC-EEEEEecCCc
Q 002226 774 VKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPR-ILIVSTPNYE 835 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~---d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvL-KPG-vLIISTPNsE 835 (951)
..+|++.++|+.+-.+. ...+|+|+.- |+ ++...+. .+.+.| +|| .+.+-.|+.+
T Consensus 91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD-----lp-~Pw~~i~-~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 91 DDNVTVHHRDVCEEGFDEELESDFDAVFLD-----LP-DPWEAIP-HAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp CTTEEEEES-GGCG--STT-TTSEEEEEEE-----SS-SGGGGHH-HHHHHE-EEEEEEEEEESSHH
T ss_pred CCCceeEecceecccccccccCcccEEEEe-----CC-CHHHHHH-HHHHHHhcCCceEEEECCCHH
Confidence 45899999999754332 3679998752 23 3333443 588889 888 7788888754
No 169
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.94 E-value=6.5e-05 Score=81.07 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+..-+++..+++..++++|||||++.|+-+.+|++..++..+|+.+|++++..+.|++.+... +...+|
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----------g~~~~I 133 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----------GVAHKI 133 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCce
Confidence 344556666667778899999999999999999876444579999999999999999887631 234689
Q ss_pred EEEEccccccCCC-------CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002226 778 VLFDGSITVFDSR-------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 778 tf~qGDa~dLp~~-------d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
+++.|++.+.-.. .++||+|+.-. -. +.-..+.+.+.+.|+||.+|+.
T Consensus 134 ~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa----dK-~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 134 DFREGPALPVLDQMIEDGKYHGTFDFIFVDA----DK-DNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEeccHHHHHHHHHhccccCCcccEEEecC----CH-HHhHHHHHHHHHhcCCCeEEEE
Confidence 9999999764211 25899997543 23 2223444567899999966554
No 170
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.94 E-value=0.00017 Score=62.59 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=67.8
Q ss_pred EEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc--cCCCC-C
Q 002226 716 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--FDSRL-H 792 (951)
Q Consensus 716 VLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d--Lp~~d-~ 792 (951)
++|+|||.|... .+.+.......++|+|++..++..++..... . ....+.+..++... +++.. .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-----------GLGLVDFVVADALGGVLPFEDSA 118 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----------CCCceEEEEeccccCCCCCCCCC
Confidence 999999999965 3333321114899999999999985443210 0 00016888888876 66666 4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
.||++.+...++|.. ......++.+.++|+ .+++...+..
T Consensus 119 ~~d~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 119 SFDLVISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred ceeEEeeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 899994444444444 334445799999997 6777666543
No 171
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=1.6e-05 Score=79.88 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
.+....+..+-+-..+..+++++|+|||.|-+....+-.. ...|+|+||++++|+.+.++... -.
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeE-------------fE 95 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEE-------------FE 95 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHH-------------hh
Confidence 4455555555555667789999999999999996665554 37899999999999999876542 22
Q ss_pred ccEEEEEccccccCCCCCCccEEEEcc
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTCLE 801 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcie 801 (951)
.++++.++|+.++.+..+.||.++..-
T Consensus 96 vqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 96 VQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred hhhheeeeeccchhccCCeEeeEEecC
Confidence 377999999999988888899998753
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=7e-05 Score=84.13 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.++++....++..|||-=||||.++....-.| .+++|.|++..|++-|+.+++.. +.....++.+
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y------------~i~~~~~~~~ 252 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYY------------GIEDYPVLKV 252 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhh------------CcCceeEEEe
Confidence 45666666788899999999999999888887 89999999999999999887632 2345555666
Q ss_pred -cccccCCCCCCccEEEEc------cccccCc-hhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 783 -SITVFDSRLHGFDIGTCL------EVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 783 -Da~dLp~~d~sFDlVVci------eVLEHL~-dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
|+..+|++.+.||.|++- ..+.-.. ++-...+.+.+.++|++| .+++.+|
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999888889999982 1111111 133455667799999998 7888888
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.89 E-value=6.7e-05 Score=87.15 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCEEEEEcCccchhHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g---~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
++.|+|||||+|-+....++.+ +...+|++|+-++.++...++++.. .+-..+|+++++|+++...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-----------n~w~~~V~vi~~d~r~v~l 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-----------NGWGDKVTVIHGDMREVEL 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-----------TTTTTTEEEEES-TTTSCH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-----------cCCCCeEEEEeCcccCCCC
Confidence 5789999999999987665543 1236999999999888777655432 1223589999999999876
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
+ ..+|+||+=..=.....+-.........++||||+++|
T Consensus 256 p-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 P-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred C-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4 49999998433222222222333445788999996655
No 174
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.89 E-value=6.2e-05 Score=80.39 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=87.8
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC---
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 788 (951)
....+||||||.|.++..+|+.. |...++|||+....+..|.+++.. .+..|+.++++|+.++-
T Consensus 48 ~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~------------~~l~Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 48 NAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE------------LGLKNLRLLCGDAVEVLDYL 114 (227)
T ss_pred CCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH------------cCCCcEEEEcCCHHHHHHhc
Confidence 34689999999999999999987 678999999999999999887653 23349999999998743
Q ss_pred CCCCCccEEEEccccccCch------hHHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002226 789 SRLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~d------D~l~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
+++++.|-|...+-=-|-.. =....|.+.+.++|+|| .+.+.|-+.+|-..
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 24568998877654322220 01246667899999999 88899988777655
No 175
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.84 E-value=4.8e-05 Score=85.58 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
......++.+.+.+...+ .+|||+|||+|.++..|++.. .+|+|||+++++++.|++++.. .+.
T Consensus 181 ~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~------------~~~ 244 (353)
T TIGR02143 181 AVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAA------------NNI 244 (353)
T ss_pred HHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCC
Confidence 445556667777665323 479999999999999999876 5899999999999999987642 234
Q ss_pred ccEEEEEcccccc
Q 002226 775 KSAVLFDGSITVF 787 (951)
Q Consensus 775 ~nVtf~qGDa~dL 787 (951)
.+++++.+|+.++
T Consensus 245 ~~v~~~~~d~~~~ 257 (353)
T TIGR02143 245 DNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEEcCHHHH
Confidence 5799999998663
No 176
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.83 E-value=9.7e-05 Score=80.48 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=74.5
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
....+.+|||+|||.|.-+..+.+..+...+++++|.|+.|++.++..+.... ......+......+.
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-----------~~~~~~~~~~~~~~~- 97 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-----------NNRNAEWRRVLYRDF- 97 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-----------ccccchhhhhhhccc-
Confidence 34577899999999999887776654445789999999999999987654211 001111111111111
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
......|+|++.++|..++.+.+..+.+.+.+.+++ .+||..|.
T Consensus 98 ~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpG 141 (274)
T PF09243_consen 98 LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPG 141 (274)
T ss_pred ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCC
Confidence 112234999999999999986667777777777766 66666664
No 177
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=2.3e-05 Score=83.62 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=82.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
....++|||||-|...+.|...+ ..+++-+|.|..|++.++.. +.....+..+.+|-+.+++.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~--------------qdp~i~~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA--------------QDPSIETSYFVGDEEFLDFKE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc--------------CCCceEEEEEecchhcccccc
Confidence 45689999999999999998876 58999999999999999752 112235677889999999999
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
++||+|++...+||+.+-+ .-+. .+...|||+.++|...
T Consensus 136 ns~DLiisSlslHW~NdLP-g~m~-~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLP-GSMI-QCKLALKPDGLFIASM 174 (325)
T ss_pred cchhhhhhhhhhhhhccCc-hHHH-HHHHhcCCCccchhHH
Confidence 9999999999998887433 3444 4899999995555433
No 178
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.83 E-value=0.00027 Score=73.10 Aligned_cols=126 Identities=12% Similarity=0.006 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 693 SPPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 693 ~PPL~~QR~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
..|......+.+...+. ...+.+|||++||+|.++..++.++. ..|++||+++.+++.+++++...
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~----------- 95 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALL----------- 95 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHh-----------
Confidence 34555555555666553 24678999999999999999999884 58999999999999998876531
Q ss_pred CCCccEEEEEcccccc-C-C-CCC-CccEEEEcccc-ccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 772 TDVKSAVLFDGSITVF-D-S-RLH-GFDIGTCLEVI-EHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 772 ~~~~nVtf~qGDa~dL-p-~-~d~-sFDlVVcieVL-EHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+...+++++.+|+.+. . . ... .||+|+.-=-. .....+.+..+.+ ..+|+++ .+++..+.
T Consensus 96 ~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~--~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 96 KSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCEN--NWILEDTVLIVVEEDR 161 (189)
T ss_pred CCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHH--CCCCCCCeEEEEEecC
Confidence 1123689999999553 2 1 122 36777763111 1222222222221 3578888 55555443
No 179
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.81 E-value=0.00015 Score=81.07 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc--cEEEEEccccc
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVLFDGSITV 786 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g---~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~--nVtf~qGDa~d 786 (951)
++..|+|+|||+|.-+..|++.. .....+++||||.++|+.+.+++.. ...+ .+.-+.||..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------------~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------------GNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------------ccCCCeEEEEEEecHHH
Confidence 45589999999999876554322 1236799999999999999887751 1223 34447887755
Q ss_pred c----CC--CCCCccEEEEcc-ccccCchhHHHHHHHHHHH-ccCCC-EEEEEe
Q 002226 787 F----DS--RLHGFDIGTCLE-VIEHMEEDEASQFGNIVLS-SFRPR-ILIVST 831 (951)
Q Consensus 787 L----p~--~d~sFDlVVcie-VLEHL~dD~l~~L~eeL~R-vLKPG-vLIIST 831 (951)
. +. ......+++..+ +|.++++++...|++.+.+ .|+|| .++|..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2 21 123467777765 9999999999999999999 99998 666644
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.80 E-value=7.7e-05 Score=83.36 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=54.8
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE-ccccccC--
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD-GSITVFD-- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q-GDa~dLp-- 788 (951)
...++||||||+|.....|+... ...+++|+||++.+++.|++.+... | ....+|++.+ .+..++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~N---------p-~l~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISAN---------P-GLNGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhc---------c-CCcCcEEEEEccchhhhhhc
Confidence 45799999999997776666543 2378999999999999999887531 0 1123677754 3333322
Q ss_pred --CCCCCccEEEEcc
Q 002226 789 --SRLHGFDIGTCLE 801 (951)
Q Consensus 789 --~~d~sFDlVVcie 801 (951)
.....||+|+|+=
T Consensus 183 i~~~~~~fDlivcNP 197 (321)
T PRK11727 183 IIHKNERFDATLCNP 197 (321)
T ss_pred ccccCCceEEEEeCC
Confidence 2356899999974
No 181
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.80 E-value=0.00024 Score=81.00 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=75.2
Q ss_pred HHHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 703 YALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 703 ~VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
.+.+.+... ...+|||++||+|.++..++...+ ..+|+++|+++.+++.+++++.. ++..++++.+
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~------------N~~~~~~v~~ 113 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLEL------------NGLENEKVFN 113 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH------------hCCCceEEEh
Confidence 344444432 346899999999999999887652 35899999999999999987642 2344677999
Q ss_pred ccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 782 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 782 GDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+|+..+......||+|++.- . . .. ..+.+...+.+++| .+.++
T Consensus 114 ~Da~~~l~~~~~fD~V~lDP-~---G-s~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 114 KDANALLHEERKFDVVDIDP-F---G-SP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hhHHHHHhhcCCCCEEEECC-C---C-Cc-HHHHHHHHHHhcCCCEEEEE
Confidence 99876432245699998742 1 2 11 23334456678888 66676
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00014 Score=77.04 Aligned_cols=132 Identities=13% Similarity=0.179 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 694 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 694 PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~-~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
|..|..-++++..+| .++.+.||+|.|+|+++..+++... +...++|||.-++.++.+++++.+..... +. .-..
T Consensus 66 p~mha~~le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~-e~-~~~~ 141 (237)
T KOG1661|consen 66 PHMHATALEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS-ES-SSKL 141 (237)
T ss_pred hHHHHHHHHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCc-hh-hhhh
Confidence 445555555554444 4789999999999999987774422 22345999999999999999887654210 00 0012
Q ss_pred CCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002226 773 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 837 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN 837 (951)
...++.+..||......+...||.|.+--.-. .+.+++...|+|| .++|+.--..++
T Consensus 142 ~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~~~~~~~ 199 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAEQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPVGQDGGT 199 (237)
T ss_pred ccCceEEEeCCccccCCccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEeecccCce
Confidence 34578899999999888889999998874432 2234577778887 777765533344
No 183
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.76 E-value=7.6e-05 Score=84.22 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCcc
Q 002226 697 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 776 (951)
Q Consensus 697 ~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~n 776 (951)
.+..++++.+.+... +.+|||++||+|.++..+++.. .+|+|||+++.+++.|++++.. .+..+
T Consensus 192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~------------~~~~~ 255 (362)
T PRK05031 192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAA------------NGIDN 255 (362)
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHH------------hCCCc
Confidence 444555566655432 3579999999999999999876 6899999999999999887642 23447
Q ss_pred EEEEEccccc
Q 002226 777 AVLFDGSITV 786 (951)
Q Consensus 777 Vtf~qGDa~d 786 (951)
++++.+|+.+
T Consensus 256 v~~~~~d~~~ 265 (362)
T PRK05031 256 VQIIRMSAEE 265 (362)
T ss_pred EEEEECCHHH
Confidence 9999999865
No 184
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.74 E-value=6.3e-05 Score=83.17 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+++.+...++..+||.+||.|..+..+++..++..+|+|+|.++++++.|++++.. ..++++++
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------------~~ri~~i~ 74 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------------FGRFTLVH 74 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------------CCcEEEEe
Confidence 4566666666778999999999999999998874457999999999999999887631 34799999
Q ss_pred ccccccCCC--C--CCccEEEEc
Q 002226 782 GSITVFDSR--L--HGFDIGTCL 800 (951)
Q Consensus 782 GDa~dLp~~--d--~sFDlVVci 800 (951)
++..++... . .++|.|++-
T Consensus 75 ~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 75 GNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCHHHHHHHHHcCCCccCEEEEC
Confidence 999876431 1 279998873
No 185
>PLN02823 spermine synthase
Probab=97.73 E-value=0.0003 Score=79.13 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=75.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc-CCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL-p~~ 790 (951)
.+++||.||+|.|..++.++++. +..+|+.||+++++++.|++.+..... ....++++++.+|+... ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--------~~~dprv~v~~~Da~~~L~~~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--------AFCDKRLELIINDARAELEKR 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--------cccCCceEEEEChhHHHHhhC
Confidence 56899999999999999998875 457899999999999999876531100 01346899999999774 333
Q ss_pred CCCccEEEEccc-------cccCchhHHHHHHH-HHHHccCCCEEEE
Q 002226 791 LHGFDIGTCLEV-------IEHMEEDEASQFGN-IVLSSFRPRILIV 829 (951)
Q Consensus 791 d~sFDlVVcieV-------LEHL~dD~l~~L~e-eL~RvLKPGvLII 829 (951)
.+.||+|++--. -.|+. -..|.+ .+.+.|+||++++
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Ly---t~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLY---TKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred CCCccEEEecCCCccccCcchhhc---cHHHHHHHHHHhcCCCcEEE
Confidence 568999997521 11122 123444 6899999995444
No 186
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.71 E-value=0.0002 Score=78.30 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchhH----HHHhcCCC----CCceEEEEeCChHHHHHHHHHHHh---h--------hhcccccC-CC-
Q 002226 712 CATTLVDFGCGSGSLL----DSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHS---K--------LSKKLDAA-VP- 770 (951)
Q Consensus 712 k~krVLDIGCGeG~ll----~~LAk~g~----~~~qVVGVDISeemLe~ArkrLsa---~--------ls~~~~~l-~P- 770 (951)
..-+|+-.||++|.=. ..|.+..+ ...+|+|.|||...|+.|+.-.=+ . ...+-+.. ..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999733 33333331 247999999999999999742110 0 00000000 00
Q ss_pred ----CCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002226 771 ----CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 771 ----r~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
..-...|.|.+.|+.+-++..+.||+|+|-+|+-+++.+....+.+.+...|+||++++.-+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 00123688999999877656678999999999999998888888888999999994444333
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.70 E-value=0.0002 Score=79.95 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
+..++.|||+|||+|.+....+..|. .+|++|+. .+|.+.|++.+... ....+|+++.|.+++...
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEA-S~MAqyA~~Lv~~N-----------~~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEA-SEMAQYARKLVASN-----------NLADRITVIPGKIEDIEL 240 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc--ceEEEEeh-hHHHHHHHHHHhcC-----------CccceEEEccCccccccC
Confidence 45788999999999999998888875 79999995 56899998876421 234689999999998876
Q ss_pred CCCCccEEEEccccccCchhH-HHHHHHHHHHccCCCEEEEEe
Q 002226 790 RLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~-l~~L~eeL~RvLKPGvLIIST 831 (951)
+ +..|+|++--.-.-+-++. ++.+. ...++|+|.+-.++|
T Consensus 241 P-Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 241 P-EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMFPT 281 (517)
T ss_pred c-hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCcccCc
Confidence 4 6899999854333333233 34444 367999997444443
No 188
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.65 E-value=0.00017 Score=76.33 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=66.8
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHhhcCC-CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhc
Q 002226 685 DRMEQALFSPPLSKQRVEYALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 763 (951)
Q Consensus 685 eRye~~~F~PPL~~QR~e~VldlL~~~k-~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~ 763 (951)
+.|....=.||..+ ++.+.+.+...+ ...|.|+|||++.++..+.+. ..|...|+-..
T Consensus 46 ~Gfr~Qv~~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~--------------- 104 (219)
T PF05148_consen 46 EGFRQQVKKWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP--------------- 104 (219)
T ss_dssp HHHHHHHCTSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S---------------
T ss_pred HHHHHHHhcCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC----ceEEEeeccCC---------------
Confidence 44555555666665 355666666544 469999999999999766432 57999996321
Q ss_pred ccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 764 KLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 764 ~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
+-.+..+|+...|.+++++|++|+.-.|.--. ...|.++..|+|||| .+.|....+
T Consensus 105 ------------n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 105 ------------NPRVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp ------------STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ------------CCCEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEecc
Confidence 11255689999999999999999876654433 345667899999998 777765543
No 189
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.65 E-value=4.7e-05 Score=88.58 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=72.6
Q ss_pred HHHHHHHhhc----CCCCEEEEEcCccchhHHHHhcCCCCCceEEEE---eCChHHHHHHHHHHHhhhhcccccCCCCCC
Q 002226 701 VEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV---DISQKSLSRAAKIIHSKLSKKLDAAVPCTD 773 (951)
Q Consensus 701 ~e~VldlL~~----~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGV---DISeemLe~ArkrLsa~ls~~~~~l~Pr~~ 773 (951)
.+.+.+.+.. .....+||+|||.|.|+.+|++++ ..++.+ |..+..++.|.+| +-
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR---------------Gv 163 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER---------------GV 163 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc---------------Cc
Confidence 3344455443 344679999999999999999886 333332 4445667777554 11
Q ss_pred CccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 774 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+ ..+-...-..+|++++.||+|-|...+-....+....|. ++-|+|+|| .++.+.|-
T Consensus 164 p--a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~-evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 164 P--AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLF-EVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred c--hhhhhhccccccCCccchhhhhcccccccchhcccceee-hhhhhhccCceEEecCCc
Confidence 1 111111235799999999999998766544434434444 599999999 66666653
No 190
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.63 E-value=0.00043 Score=71.30 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=91.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+...+....+..|||+|-|+|-++..+++++-....++.++.|.+....-.++. +.++++
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------------p~~~ii 99 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------------PGVNII 99 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------------CCcccc
Confidence 345666677788899999999999999999999866789999999999988776543 356799
Q ss_pred EccccccC-----CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 781 DGSITVFD-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 781 qGDa~dLp-----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
.||+.++. ..+..||.|+|.-=+-.++....-++.+.+...|.+| .++-
T Consensus 100 ~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 100 NGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99998876 3456799999988888888787778888899999998 4443
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00021 Score=77.85 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+++.....++..|||||+|.|.++..|++.+ .+|++|++++.++..-++++. ...+++++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--------------~~~n~~vi 81 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--------------PYDNLTVI 81 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--------------cccceEEE
Confidence 4566777777778899999999999999999998 689999999999999887642 24589999
Q ss_pred EccccccCCCCC-CccEEEEc
Q 002226 781 DGSITVFDSRLH-GFDIGTCL 800 (951)
Q Consensus 781 qGDa~dLp~~d~-sFDlVVci 800 (951)
+||+...++... .++.|+++
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred eCchhcCcchhhcCCCEEEEc
Confidence 999999887643 67777764
No 192
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.62 E-value=0.00021 Score=80.55 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
....+.++.+.+.+...+. +|||+=||.|.++..|++.. .+|+|||+++++++.|++++. .++.
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~------------~N~i 243 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAK------------LNGI 243 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHH------------HTT-
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHH------------HcCC
Confidence 4566778888888886655 89999999999999999988 799999999999999998765 2456
Q ss_pred ccEEEEEccccccC
Q 002226 775 KSAVLFDGSITVFD 788 (951)
Q Consensus 775 ~nVtf~qGDa~dLp 788 (951)
.+++|+.+++.++.
T Consensus 244 ~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 244 DNVEFIRGDAEDFA 257 (352)
T ss_dssp -SEEEEE--SHHCC
T ss_pred CcceEEEeeccchh
Confidence 78999998887653
No 193
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00022 Score=82.60 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
...+..++++.+.+...++.+|||+=||.|.++..|++.. .+|+|+|+++++++.|+++.. .++.
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~------------~n~i 340 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAA------------ANGI 340 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHH------------HcCC
Confidence 4556788889999988888999999999999999999877 799999999999999988764 3466
Q ss_pred ccEEEEEccccccCCCC---CCccEEEE
Q 002226 775 KSAVLFDGSITVFDSRL---HGFDIGTC 799 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d---~sFDlVVc 799 (951)
.|++|..++++++.... ..+|+|+.
T Consensus 341 ~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred CcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 78999999998876543 47898875
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00039 Score=76.59 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=80.3
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-C
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L 791 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d 791 (951)
+++||-||-|.|..++.++++. +..+++.|||+++.++.|++.+..... ....++++++.+|..++-.. .
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~--------~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSG--------GADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccc--------ccCCCceEEEeccHHHHHHhCC
Confidence 3799999999999999999998 579999999999999999987642110 01247999999999875432 3
Q ss_pred CCccEEEEccccccCchhH---HHHHHHHHHHccCCCEEEEEe
Q 002226 792 HGFDIGTCLEVIEHMEEDE---ASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~---l~~L~eeL~RvLKPGvLIIST 831 (951)
.+||+|++-..= ...+.+ -..|.+.+.+.|++++++++-
T Consensus 148 ~~fDvIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 379999875431 122100 145667899999999665554
No 195
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=8e-05 Score=81.62 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=77.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
.+..++|+|||.|.++.. .+...++|.|++...+..|++. + ......+|+..+|++.
T Consensus 45 ~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~----------------~--~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS----------------G--GDNVCRADALKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC----------------C--CceeehhhhhcCCCCC
Confidence 467899999999999741 1347899999999999888642 1 1267788999999999
Q ss_pred CCccEEEEccccccCch-hHHHHHHHHHHHccCCC-EEEEEec
Q 002226 792 HGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+||.++++-|+||+.. .......+++.|.++|| ...|.+.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999999999999984 33456667899999998 5444443
No 196
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.58 E-value=0.00047 Score=70.47 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=73.4
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC--
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL-- 791 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d-- 791 (951)
..|+|+.||.|..+..+|+.+ .+|++||+++..++.|+++..-. +-..+|++++||+.++....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vY-----------Gv~~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVY-----------GVADNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHT-----------T-GGGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEeCCHHHHHhhccc
Confidence 369999999999999999998 79999999999999999886532 12458999999998864321
Q ss_pred CC-ccEEEEc-------------ccc-ccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002226 792 HG-FDIGTCL-------------EVI-EHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 841 (951)
Q Consensus 792 ~s-FDlVVci-------------eVL-EHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~ 841 (951)
.. ||+|++. .-| .++.+-....+.+ ..+.+.+.+++.--.|.+.+.+..
T Consensus 67 ~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~-~~~~~t~nv~l~LPRn~dl~ql~~ 130 (163)
T PF09445_consen 67 NKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLK-AARKITPNVVLFLPRNSDLNQLSQ 130 (163)
T ss_dssp ----SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHH-HHHHH-S-EEEEEETTB-HHHHHH
T ss_pred cccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHH-HHHhhCCCEEEEeCCCCCHHHHHH
Confidence 22 8999972 122 4555434555555 455566776666666777666544
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.56 E-value=0.0013 Score=72.67 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE-EEEEccccccC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~-~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV-tf~qGDa~dLp 788 (951)
..+-+||||.||.|++..-.....+. ...|.-.|.|+..++..++.+.. .+..++ +|.++|+.+..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------------~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------------RGLEDIARFEQGDAFDRD 201 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH------------cCCccceEEEecCCCCHh
Confidence 46679999999999998766655422 36899999999999999887753 233444 99999997743
Q ss_pred C---CCCCccEEEEccccccCchhH-HHHHHHHHHHccCCCEEEEEe
Q 002226 789 S---RLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 789 ~---~d~sFDlVVcieVLEHL~dD~-l~~L~eeL~RvLKPGvLIIST 831 (951)
. -.-..|+++.++++|.+++.. ...-..-+.+.+.||..+|-|
T Consensus 202 ~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 202 SLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred HhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 2 234579999999999999755 343445689999999555544
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.54 E-value=0.00023 Score=74.71 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=74.4
Q ss_pred hhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccc
Q 002226 687 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 766 (951)
Q Consensus 687 ye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~ 766 (951)
+....|+|.+...|.... +.+ .++.+|+|+-||-|.|+..+++++ ....|+++|+++..++..++.+...
T Consensus 79 ~~kvyfs~rl~~Er~Ri~-~~v--~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lN------ 148 (200)
T PF02475_consen 79 LSKVYFSPRLSTERRRIA-NLV--KPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLN------ 148 (200)
T ss_dssp TTTS---GGGHHHHHHHH-TC----TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHT------
T ss_pred cceEEEccccHHHHHHHH-hcC--CcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHc------
Confidence 356678888888886544 332 357899999999999999999843 2378999999999999998776521
Q ss_pred cCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEE
Q 002226 767 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 827 (951)
Q Consensus 767 ~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvL 827 (951)
.-..++..+++|+.++.. ...||.|++..- ++. ..|...+.+.+++|.+
T Consensus 149 -----kv~~~i~~~~~D~~~~~~-~~~~drvim~lp-~~~-----~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 149 -----KVENRIEVINGDAREFLP-EGKFDRVIMNLP-ESS-----LEFLDAALSLLKEGGI 197 (200)
T ss_dssp -----T-TTTEEEEES-GGG----TT-EEEEEE--T-SSG-----GGGHHHHHHHEEEEEE
T ss_pred -----CCCCeEEEEcCCHHHhcC-ccccCEEEECCh-HHH-----HHHHHHHHHHhcCCcE
Confidence 122468999999988876 788999887532 111 1233446677777743
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.53 E-value=0.00033 Score=82.58 Aligned_cols=116 Identities=11% Similarity=0.116 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.....+||||||.|.++..+|+.. +...++|||+....+..+.++.. +.+..|+.++.+|+..+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~------------~~~l~N~~~~~~~~~~~~~~ 412 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAG------------EQNITNFLLFPNNLDLILND 412 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHH------------HcCCCeEEEEcCCHHHHHHh
Confidence 346789999999999999999987 56899999999999888876643 134568888888875432
Q ss_pred CCCCCccEEEEccccccCchh------HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002226 789 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 839 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD------~l~~L~eeL~RvLKPG-vLIISTPNsEfN~l 839 (951)
++.+++|.|+.++-=-|.... ....|.+.+.++|+|| .+.+.|-+.+|...
T Consensus 413 ~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~ 470 (506)
T PRK01544 413 LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE 470 (506)
T ss_pred cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 456789999876543332210 1246667899999999 88888888777654
No 200
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=97.51 E-value=0.00015 Score=61.48 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=34.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002226 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
.|.|.+.+.+..+.+|.-..||+|+|.||+.||++|
T Consensus 32 ~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 32 RFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 999999999988888999999999999999999987
No 201
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.47 E-value=0.0011 Score=65.22 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCccchhHHHHhc-----CCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 711 SCATTLVDFGCGSGSLLDSLLD-----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk-----~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
.+..+|+|+|||.|+++..|+. .. ..+|+|||.++..++.+.++...... ....++.+.++++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP--NLRVLGIDCNESLVESAQKRAQKLGS---------DLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC--CCeEEEEECCcHHHHHHHHHHHHhcc---------hhhccchhhccchh
Confidence 5778999999999999999987 43 38999999999999999877543210 11235667777665
Q ss_pred ccCCCCCCccEEEEccccccCc
Q 002226 786 VFDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLEHL~ 807 (951)
+... ....++++..+.=--+.
T Consensus 93 ~~~~-~~~~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 93 DESS-SDPPDILVGLHACGDLS 113 (141)
T ss_pred hhcc-cCCCeEEEEeecccchH
Confidence 4432 56678888777665555
No 202
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.45 E-value=0.00023 Score=80.87 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=81.4
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
++.+++|+|||-|....+++.... +.++|+|.++..+.++........ ......+..+++.+.++++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~-----------l~~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAY-----------LDNKCNFVVADFGKMPFED 176 (364)
T ss_pred ccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHH-----------hhhhcceehhhhhcCCCCc
Confidence 456899999999999999988764 789999999998888765433211 1123445788999999999
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
+.||.+.++++.+|.+ +....+ ++++|+++||++.+
T Consensus 177 n~fd~v~~ld~~~~~~-~~~~~y-~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAP-DLEKVY-AEIYRVLKPGGLFI 212 (364)
T ss_pred cccCcEEEEeecccCC-cHHHHH-HHHhcccCCCceEE
Confidence 9999999999999999 443455 56999999995544
No 203
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.43 E-value=0.0011 Score=80.92 Aligned_cols=143 Identities=17% Similarity=0.072 Sum_probs=91.8
Q ss_pred hhhhcCCChhHHHHHHHHHHHhhc-CCCCEEEEEcCccchhHHHHhcCC-------------------------------
Q 002226 687 MEQALFSPPLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYP------------------------------- 734 (951)
Q Consensus 687 ye~~~F~PPL~~QR~e~VldlL~~-~k~krVLDIGCGeG~ll~~LAk~g------------------------------- 734 (951)
|+.....-|+.+.-...++....- .++..++|.+||+|.++...+...
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 444444457777666667665544 356899999999999997664310
Q ss_pred ----------CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC--CCccEEEEcc-
Q 002226 735 ----------TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL--HGFDIGTCLE- 801 (951)
Q Consensus 735 ----------~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d--~sFDlVVcie- 801 (951)
....+++|+|+++.+++.|++++... +....+++.++|+.+++... +.||+|+++=
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~-----------g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRA-----------GVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 00136999999999999999887531 22246899999998876543 4799999972
Q ss_pred ccccCc-hhHHHHHHHHHHHcc---CCC-EEEEEecCCchhHHH
Q 002226 802 VIEHME-EDEASQFGNIVLSSF---RPR-ILIVSTPNYEYNAIL 840 (951)
Q Consensus 802 VLEHL~-dD~l~~L~eeL~RvL---KPG-vLIISTPNsEfN~lf 840 (951)
-.+.+. ......+.+.+...+ .+| .+.+.|++.++...+
T Consensus 313 Yg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~~l~~~~ 356 (702)
T PRK11783 313 YGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSPELLSCL 356 (702)
T ss_pred CcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHh
Confidence 112222 122222322233333 377 777778877655444
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=97.43 E-value=0.0011 Score=72.52 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
..+++||=||-|+|..++.++|+. .+|+-|||++++++.+++.+...... -..++++++.. +. ...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~~-~~--~~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAKQ-LL--DLD 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEeeh-hh--hcc
Confidence 467999999999999999999996 59999999999999999865432211 24467777752 21 112
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
.+.||+|+.-.. . + ..|.+.+.+.|+||+++++
T Consensus 137 ~~~fDVIIvDs~----~-~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 137 IKKYDLIICLQE----P-D--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCcCCEEEEcCC----C-C--hHHHHHHHHhcCCCcEEEE
Confidence 368999997543 2 2 2445679999999955553
No 205
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.37 E-value=0.0016 Score=76.35 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=84.9
Q ss_pred HHHHh--hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 704 ALQHI--KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 704 VldlL--~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+...+ ...++.+|||+++|.|.-+..++...+....|+++|+++.-++..++++.. .+..++.+..
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r------------~G~~nv~v~~ 170 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR------------CGVSNVALTH 170 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEe
Confidence 33444 556889999999999999998887653346899999999999999888762 3556788888
Q ss_pred ccccccCC-CCCCccEEE----Ec--cccccCch-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002226 782 GSITVFDS-RLHGFDIGT----CL--EVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 782 GDa~dLp~-~d~sFDlVV----ci--eVLEHL~d-------D-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.|...+.. ....||.|+ |+ +++.+-++ + ....+.+...++|||| .++-+|-.
T Consensus 171 ~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 171 FDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 88876542 235799999 55 33333221 1 1234556688999999 66667765
No 206
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.32 E-value=0.001 Score=74.77 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=78.0
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
....+|+|.|.|+.+..+.... .+|-|++.+...+..++..+ . +.|+.+-||..+- .+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~---------------~-~gV~~v~gdmfq~-~P-- 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYL---------------A-PGVEHVAGDMFQD-TP-- 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhh---------------c-CCcceeccccccc-CC--
Confidence 4789999999999999998866 46999999999888886653 1 2477778887654 22
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.-|+|++-++|||+.+++.-.|++++...|+|| .+|+.
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 345999999999999999999999999999998 55553
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.31 E-value=0.0017 Score=69.87 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-C
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 789 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-~ 789 (951)
..+++||=||-|.|..++.++++. +..+|+.|||++..++.|++.+...... ...++++++.+|+..+- .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHHHHT
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHHHHh
Confidence 368999999999999999999886 5689999999999999998765432111 23468999999997643 2
Q ss_pred CCC-CccEEEEccccccCchhH--HHHHHHHHHHccCCCEEEE
Q 002226 790 RLH-GFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 ~d~-sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPGvLII 829 (951)
... .||+|+.--.-..-+... -..|.+.+.+.|+|+++++
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 334 899998732211111111 1355567999999994444
No 208
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.29 E-value=0.00068 Score=73.82 Aligned_cols=114 Identities=12% Similarity=0.238 Sum_probs=77.9
Q ss_pred hhhhhcCCChhHHHHHHHHHHHhhcC-CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcc
Q 002226 686 RMEQALFSPPLSKQRVEYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 764 (951)
Q Consensus 686 Rye~~~F~PPL~~QR~e~VldlL~~~-k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~ 764 (951)
.|....-.||.++ ++.+++.++.. ....|.|+|||++.++. ... ..|..+|+-. +
T Consensus 155 gfr~QV~kWP~nP--ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~---~kV~SfDL~a-----~----------- 210 (325)
T KOG3045|consen 155 GFRSQVKKWPENP--LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SER---HKVHSFDLVA-----V----------- 210 (325)
T ss_pred HHHHHHHhCCCCh--HHHHHHHHHhCcCceEEEecccchhhhhh---ccc---cceeeeeeec-----C-----------
Confidence 3444444555555 33455555544 45689999999999985 222 5799999521 1
Q ss_pred cccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002226 765 LDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 837 (951)
Q Consensus 765 ~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN 837 (951)
+-++..+|+.+.|.++.+.|++|+.-.|. . .....|..++.|+|+|| .+.|....+.|.
T Consensus 211 -----------~~~V~~cDm~~vPl~d~svDvaV~CLSLM--g-tn~~df~kEa~RiLk~gG~l~IAEv~SRf~ 270 (325)
T KOG3045|consen 211 -----------NERVIACDMRNVPLEDESVDVAVFCLSLM--G-TNLADFIKEANRILKPGGLLYIAEVKSRFS 270 (325)
T ss_pred -----------CCceeeccccCCcCccCcccEEEeeHhhh--c-ccHHHHHHHHHHHhccCceEEEEehhhhcc
Confidence 23456789999999999999998765543 3 23456667899999999 777776665554
No 209
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0023 Score=73.10 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=96.3
Q ss_pred hhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCC-----------------------------
Q 002226 687 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTAL----------------------------- 737 (951)
Q Consensus 687 ye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~----------------------------- 737 (951)
|+.....-||.+.--..++.+....++..++|-=||+|.++...+-.+...
T Consensus 166 yR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 166 YRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 566666668888888888877777777899999999999998766544110
Q ss_pred --c-------eEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccc-cccCc
Q 002226 738 --E-------KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV-IEHME 807 (951)
Q Consensus 738 --~-------qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieV-LEHL~ 807 (951)
. .++|+|+++.+++.|+.+... .+-...|+|.++|+..+..+...+|+|+|+== =+-+.
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~-----------AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg 314 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARA-----------AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLG 314 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHh-----------cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcC
Confidence 1 377999999999999887643 23446799999999998876689999999621 12222
Q ss_pred hh-----HHHHHHHHHHHccCCC-EEEEEecC
Q 002226 808 ED-----EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 808 dD-----~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+ --..|.+.+.+.++-. ..|++++.
T Consensus 315 ~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 315 SEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred ChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 22 1134555566666665 66666553
No 210
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.22 E-value=0.0096 Score=68.57 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=77.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC---
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 788 (951)
++++|||+=|=||.++...+..|. .+|++||+|...|+.|++++. +++. ...++.|+++|+.++-
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~--LNg~--------~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAE--LNGL--------DGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHH--hcCC--------CccceeeehhhHHHHHHHH
Confidence 589999999999999999998883 599999999999999998764 2211 2346899999997642
Q ss_pred -CCCCCccEEEEc--------cccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 789 -SRLHGFDIGTCL--------EVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 789 -~~d~sFDlVVci--------eVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
-....||+|+.- ....-+. .....+...+.++|+|| .++++|
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~-rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQ-RDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHH-HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 234589999971 1111112 22234556789999999 444443
No 211
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.21 E-value=0.0017 Score=73.28 Aligned_cols=117 Identities=20% Similarity=0.156 Sum_probs=90.4
Q ss_pred hhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccc
Q 002226 687 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 766 (951)
Q Consensus 687 ye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~ 766 (951)
.....|+|.+...|...+... . .+.+|||.=+|-|.|+..+++.+. ..|+++|+++.+++..++++.-
T Consensus 166 ~~Kv~Fsprl~~ER~Rva~~v-~--~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~L------- 233 (341)
T COG2520 166 VAKVYFSPRLSTERARVAELV-K--EGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRL------- 233 (341)
T ss_pred hHHeEECCCchHHHHHHHhhh-c--CCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHh-------
Confidence 345789999999998766443 2 488999999999999999999984 3499999999999999887652
Q ss_pred cCCCCCCC-ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCE
Q 002226 767 AAVPCTDV-KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI 826 (951)
Q Consensus 767 ~l~Pr~~~-~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGv 826 (951)
++. ..+..++||+.+.....+.+|-|++...- ....|.....+.+++|.
T Consensus 234 -----N~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~g 283 (341)
T COG2520 234 -----NKVEGRVEPILGDAREVAPELGVADRIIMGLPK------SAHEFLPLALELLKDGG 283 (341)
T ss_pred -----cCccceeeEEeccHHHhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcCc
Confidence 222 24899999999998877899999887652 11233345677788883
No 212
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.17 E-value=0.018 Score=63.33 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=100.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHh-----------hh----------hcccccCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS-----------KL----------SKKLDAAVP 770 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa-----------~l----------s~~~~~l~P 770 (951)
...+||--|||-|+++..+++.| ..+.|.|.|--|+-...-.++. .. ........|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45799999999999999999998 8999999999997665433321 00 000001111
Q ss_pred ----C---CCCccEEEEEccccccCCCC---CCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002226 771 ----C---TDVKSAVLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 840 (951)
Q Consensus 771 ----r---~~~~nVtf~qGDa~dLp~~d---~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf 840 (951)
. ....++.+..||..+..... +.||+|+..+.|.--. .. -.+.+.+.++||||++-|- +.++.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~-Ni-~~Yi~tI~~lLkpgG~WIN-----~GPLl 205 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE-NI-IEYIETIEHLLKPGGYWIN-----FGPLL 205 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH-HH-HHHHHHHHHHhccCCEEEe-----cCCcc
Confidence 0 12346888889988876555 7899998887665533 33 3455679999999954441 11211
Q ss_pred HhhccCccCCCCchhhhhccccc-cCCCCccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002226 841 QKSSSTIQEDDPDEKTQLQSCKF-RNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 897 (951)
Q Consensus 841 ~~L~~~~~~eYPde~~~~~~~~f-Rh~DHkFEWTreEFqaWae~LA~r~GYsVEf~GV 897 (951)
-.. .+. ...+-..+.+.+|+. .++.+.||.++..-.
T Consensus 206 yh~-----------------~~~~~~~~~sveLs~eEi~----~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 206 YHF-----------------EPMSIPNEMSVELSLEEIK----ELIEKLGFEIEKEES 242 (270)
T ss_pred ccC-----------------CCCCCCCCcccCCCHHHHH----HHHHHCCCEEEEEEE
Confidence 100 001 112233789999999 678889999875444
No 213
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.0022 Score=70.51 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHhhcC---CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 695 PLSKQRVEYALQHIKES---CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~---k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
|-.+.-++++.+.+... ++..+||+|||+|..+..++..- +.+.|++||.|+.++..|.++.....
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~---------- 196 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLK---------- 196 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHh----------
Confidence 33455566777766543 45579999999999999888766 36899999999999999988765321
Q ss_pred CCCccEEEEEc----cccc-cCCCCCCccEEEEcc
Q 002226 772 TDVKSAVLFDG----SITV-FDSRLHGFDIGTCLE 801 (951)
Q Consensus 772 ~~~~nVtf~qG----Da~d-Lp~~d~sFDlVVcie 801 (951)
...++.+.+- |..+ .+..++..|+++|+=
T Consensus 197 -l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 197 -LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred -hcCceEEEecccccccccccccccCceeEEecCC
Confidence 1234555533 3322 223467899999963
No 214
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=97.10 E-value=0.0016 Score=54.73 Aligned_cols=57 Identities=26% Similarity=0.332 Sum_probs=44.2
Q ss_pred HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002226 24 QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 24 q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
|+.|-.-.|.+.++.. |...| .|.|.+.+.+..+.+|.-+.||+|||.||+.||+.|
T Consensus 10 ~~~~~~~~y~~~~~~g-----------~~~~~-~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 10 QKRGLPPEYELVKEEG-----------PDHAP-RFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred HHCCCCCEEEEEeeeC-----------CCCCC-cEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 5566567887765432 22223 899999998877778999999999999999999987
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.09 E-value=0.0032 Score=68.83 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=75.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCC------CCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYP------TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g------~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
+++.+++....+.+|+|-.||+|.++..+.++. ....+++|+|+++.++..|+-++. +.+ ....
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l~~--------~~~~ 105 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--LHG--------IDNS 105 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--HTT--------HHCB
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--hhc--------cccc
Confidence 477777777778899999999999998776521 022789999999999998875542 111 1122
Q ss_pred cEEEEEccccccCCC--CCCccEEEEc---ccccc----Cc------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 776 SAVLFDGSITVFDSR--LHGFDIGTCL---EVIEH----ME------------EDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 776 nVtf~qGDa~dLp~~--d~sFDlVVci---eVLEH----L~------------dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...+..+|....+.. ...||+|+++ ...++ .. ....-.|...+.+.|++| .+++.+|+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 345788887655443 4789999994 12101 00 011124666789999997 66666675
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.09 E-value=0.0045 Score=66.85 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+.-.+.+++.+...++..|||||.|.|.++..|++.+ .++++||+++.+.+.-++++. ...++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--------------~~~~~ 78 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--------------SNPNV 78 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--------------TCSSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--------------hcccc
Confidence 4445567777777788999999999999999999988 799999999999988877542 34589
Q ss_pred EEEEccccccCCCC---CCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEec
Q 002226 778 VLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 832 (951)
Q Consensus 778 tf~qGDa~dLp~~d---~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTP 832 (951)
+++.+|+.+++... .....|+++-- .++..+ .+ ..+...-+.| .+++..+
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlP-y~is~~---il-~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLP-YNISSP---IL-RKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEET-GTGHHH---HH-HHHHHHGGGCEEEEEEEEE
T ss_pred eeeecchhccccHHhhcCCceEEEEEec-ccchHH---HH-HHHhhcccccccceEEEEe
Confidence 99999999887654 34445555422 244422 22 2344444555 4444444
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.05 E-value=0.0034 Score=74.00 Aligned_cols=77 Identities=26% Similarity=0.305 Sum_probs=51.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccc
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 784 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~-------~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa 784 (951)
...+|||.|||+|.++..++++.. -...++|+|+++..+..++.++.... ...+.+..+|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~------------~~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA------------LLEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC------------CCCceeeeccc
Confidence 456999999999999987775431 11578999999999999988764211 11234444443
Q ss_pred ccc-----CCCCCCccEEEEc
Q 002226 785 TVF-----DSRLHGFDIGTCL 800 (951)
Q Consensus 785 ~dL-----p~~d~sFDlVVci 800 (951)
... ....+.||+|+++
T Consensus 99 l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred ccccccccccccCcccEEEeC
Confidence 221 1123579999995
No 218
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.96 E-value=0.0042 Score=68.13 Aligned_cols=122 Identities=12% Similarity=0.172 Sum_probs=73.0
Q ss_pred HHHhhcC-CCCEEEEEcCc--cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 705 LQHIKES-CATTLVDFGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 705 ldlL~~~-k~krVLDIGCG--eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
++.+... .....|||||| +-..+..+++...+..+|+-||+++-.+..++..+... ......+++
T Consensus 60 Vr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------------~~g~t~~v~ 127 (267)
T PF04672_consen 60 VRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------------PRGRTAYVQ 127 (267)
T ss_dssp HHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------------TTSEEEEEE
T ss_pred HHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------------CCccEEEEe
Confidence 3344444 67899999999 33455666665556689999999999999998876421 112489999
Q ss_pred ccccccCCC------CCCcc-----EEEEccccccCch-hHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002226 782 GSITVFDSR------LHGFD-----IGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 838 (951)
Q Consensus 782 GDa~dLp~~------d~sFD-----lVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLIISTPNsEfN~ 838 (951)
+|+.+...- ..-+| .+++..++||+++ ++...+...+...|.|| .++|+-...+..+
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p 197 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP 197 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH
Confidence 999874321 12233 6888999999986 34456666799999999 8888877665543
No 219
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.87 E-value=0.0045 Score=68.07 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=64.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
.+++.....++..|||+|-|+|.++..|.+.+ .+|+++++++.|+..-.++... .......++++|
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~g-----------tp~~~kLqV~~g 114 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQG-----------TPKSGKLQVLHG 114 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcC-----------CCccceeeEEec
Confidence 34444455678899999999999999999998 7999999999999998887531 122357899999
Q ss_pred cccccCCCCCCccEEEE
Q 002226 783 SITVFDSRLHGFDIGTC 799 (951)
Q Consensus 783 Da~dLp~~d~sFDlVVc 799 (951)
|....+. -.||.+++
T Consensus 115 D~lK~d~--P~fd~cVs 129 (315)
T KOG0820|consen 115 DFLKTDL--PRFDGCVS 129 (315)
T ss_pred ccccCCC--cccceeec
Confidence 9987764 46898887
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.85 E-value=0.013 Score=66.98 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=71.8
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-CC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 792 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d~ 792 (951)
.+|||+.||+|..+..++...+...+|+++|++++.++.+++++.. .+..++.++++|+..+-.. ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~------------N~~~~~~v~~~Da~~~l~~~~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY------------NSVENIEVPNEDAANVLRYRNR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEchhHHHHHHHhCC
Confidence 4899999999999999988732237899999999999999887642 2334688999998765432 35
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.||+|..-- . ..+ ..|.+.+.+.+++| .+.++
T Consensus 114 ~fDvIdlDP-f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 114 KFHVIDIDP-F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCEEEeCC-C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 699997633 2 222 13445577788887 66665
No 221
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.84 E-value=0.0019 Score=67.73 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEE
Q 002226 699 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 778 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVt 778 (951)
.|+....+.+.......+.|+|.|+|.++...++.. .+|++|+.++...+.|.++++ -.+..+++
T Consensus 19 eRlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~------------v~g~~n~e 83 (252)
T COG4076 19 ERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLH------------VPGDVNWE 83 (252)
T ss_pred HHHHHHHHHHHHHhhhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCC------------CCCCcceE
Confidence 355555555555556899999999999998777765 799999999999999988764 24567999
Q ss_pred EEEccccccCCCCCCccEEEEcccccc-CchhHHHHHHHHHHHccCCCEEE
Q 002226 779 LFDGSITVFDSRLHGFDIGTCLEVIEH-MEEDEASQFGNIVLSSFRPRILI 828 (951)
Q Consensus 779 f~qGDa~dLp~~d~sFDlVVcieVLEH-L~dD~l~~L~eeL~RvLKPGvLI 828 (951)
++.||+.+.++ ...|+|+|-..=.- +.+++...+. .+..+||-+.-|
T Consensus 84 vv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n-~vleFLr~d~ti 131 (252)
T COG4076 84 VVVGDARDYDF--ENADVVICEMLDTALIEEKQVPVIN-AVLEFLRYDPTI 131 (252)
T ss_pred EEecccccccc--cccceeHHHHhhHHhhcccccHHHH-HHHHHhhcCCcc
Confidence 99999999988 67899988432111 2223434443 466677776333
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.80 E-value=0.014 Score=66.33 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+++++|||||++|.++..|++++ .+|+|||..+ ++ ..+. ..++|+.+++|.......
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~--l~---~~L~--------------~~~~V~h~~~d~fr~~p~ 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP--MA---QSLM--------------DTGQVEHLRADGFKFRPP 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh--cC---Hhhh--------------CCCCEEEEeccCcccCCC
Confidence 478899999999999999999998 6999999543 11 1111 235899999988776544
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
.+.+|.++|-.+. .+. ...+-|..+|..|
T Consensus 268 ~~~vDwvVcDmve-----~P~-rva~lm~~Wl~~g 296 (357)
T PRK11760 268 RKNVDWLVCDMVE-----KPA-RVAELMAQWLVNG 296 (357)
T ss_pred CCCCCEEEEeccc-----CHH-HHHHHHHHHHhcC
Confidence 6789999997661 222 2334577788777
No 223
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.77 E-value=0.004 Score=64.70 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=69.5
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCc
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 794 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sF 794 (951)
+++|||+|.|.-+..|+=.. |..+++.+|....-+..-+.-... -+..+++++++.+++ ......|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~------------L~L~nv~v~~~R~E~-~~~~~~f 116 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE------------LGLSNVEVINGRAEE-PEYRESF 116 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH------------HT-SSEEEEES-HHH-TTTTT-E
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH------------hCCCCEEEEEeeecc-cccCCCc
Confidence 89999999999998877554 457899999998766555433221 144589999999998 4456889
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002226 795 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 795 DlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
|+|++--| ..+..+.+-+..++++|+.++.
T Consensus 117 d~v~aRAv------~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 117 DVVTARAV------APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EEEEEESS------SSHHHHHHHHGGGEEEEEEEEE
T ss_pred cEEEeehh------cCHHHHHHHHHHhcCCCCEEEE
Confidence 99999888 4455666778899999844443
No 224
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.73 E-value=0.019 Score=61.96 Aligned_cols=116 Identities=12% Similarity=0.150 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+..-+++..+++..+++++||||-=+|+-+..+|..-++..+|+++|++++..+.+.+.... .+-...|
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-----------agv~~KI 127 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-----------AGVDHKI 127 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-----------cccccee
Confidence 45566777777888999999999888888777776655568999999999999999655432 2344589
Q ss_pred EEEEcccccc-C-----CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 778 VLFDGSITVF-D-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 778 tf~qGDa~dL-p-----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
++++|.+.+. + ...+.||.++ +.|-.+.-. .+.+.+.+++|+|.+|+
T Consensus 128 ~~i~g~a~esLd~l~~~~~~~tfDfaF----vDadK~nY~-~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 128 TFIEGPALESLDELLADGESGTFDFAF----VDADKDNYS-NYYERLLRLLRVGGVIV 180 (237)
T ss_pred eeeecchhhhHHHHHhcCCCCceeEEE----EccchHHHH-HHHHHHHhhcccccEEE
Confidence 9999988652 1 2357899995 455553333 55567999999995554
No 225
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.0006 Score=69.48 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=72.3
Q ss_pred EEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH-HhhccCccCCCCch
Q 002226 777 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL-QKSSSTIQEDDPDE 854 (951)
Q Consensus 777 Vtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf-~~L~~~~~~eYPde 854 (951)
+.+.+-......|.+++.|+|++-.|+||+..++...+.++++++|||| .+-|++|...|-... +.-.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~v---------- 100 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDV---------- 100 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhh----------
Confidence 3444333345678899999999999999999888888888999999999 999999998776432 1110
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002226 855 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 893 (951)
Q Consensus 855 ~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVE 893 (951)
+.-+..+-.|++|++-.+.+.+. ++...+|+.|.
T Consensus 101 -qvggpgpndhP~~r~v~t~r~m~----n~~m~~~~~~k 134 (185)
T COG4627 101 -QVGGPGPNDHPLHRIVKTMRMMF----NGFMDAGFVVK 134 (185)
T ss_pred -hccCCCCCCCcHHHHHHHHHHHH----HHHHhhhheeh
Confidence 00112334477888877777666 45666677664
No 226
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.69 E-value=0.0083 Score=62.14 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 695 PLSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 695 PL~~QR~e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
|....-.+.+.+++.. ..+.++||+=||+|.++...+.+|. .+|+.||.+...++..++++....
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~----------- 89 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLG----------- 89 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----------
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhC-----------
Confidence 4444555667777765 4889999999999999998888884 799999999999999998876421
Q ss_pred CCccEEEEEccccccC----CCCCCccEEEEccccccCchhHHHHHHHHHH--HccCCC-EEEEEecCC
Q 002226 773 DVKSAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNY 834 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp----~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~--RvLKPG-vLIISTPNs 834 (951)
...++.++.+|+...- .....||+|++-==...- .....+.+.+. .+|+++ .+|+-....
T Consensus 90 ~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 90 LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2236888988865422 136789999874211111 10122223343 788998 666655543
No 227
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.58 E-value=0.015 Score=64.38 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=85.7
Q ss_pred cceeeeecccCCChhhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHH
Q 002226 670 LEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS 749 (951)
Q Consensus 670 LEyyI~LL~v~ep~EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeem 749 (951)
+.|.+++...+..+ |+..-.+.|. ++.+. .++++|||+=|=+|.++...+..|. .+|++||.|..+
T Consensus 93 l~f~v~l~~gqktG--------lFlDqR~nR~-~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~a 158 (286)
T PF10672_consen 93 LKFRVDLTDGQKTG--------LFLDQRENRK-WVRKY---AKGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRA 158 (286)
T ss_dssp EEEEEESSSSSSTS--------S-GGGHHHHH-HHHHH---CTTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHH
T ss_pred EEEEEEcCCCCcce--------EcHHHHhhHH-HHHHH---cCCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHH
Confidence 56666666544433 3333333332 34433 3678999999999999998888773 589999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC---CCCCccEEEEc---ccc--ccCchhHHHHHHHHHHHc
Q 002226 750 LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---RLHGFDIGTCL---EVI--EHMEEDEASQFGNIVLSS 821 (951)
Q Consensus 750 Le~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~---~d~sFDlVVci---eVL--EHL~dD~l~~L~eeL~Rv 821 (951)
++.|++++.- ++. ...+++++++|+.+.-. ..+.||+|++- +.= ..+..+ ...+...+.++
T Consensus 159 l~~a~~N~~l--Ng~--------~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~-y~~L~~~a~~l 227 (286)
T PF10672_consen 159 LEWAKENAAL--NGL--------DLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERD-YKKLLRRAMKL 227 (286)
T ss_dssp HHHHHHHHHH--TT---------CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHH--cCC--------CccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHH-HHHHHHHHHHh
Confidence 9999987652 111 23579999999976321 34689999981 110 111222 23444568899
Q ss_pred cCCCEEEEEecC
Q 002226 822 FRPRILIVSTPN 833 (951)
Q Consensus 822 LKPGvLIISTPN 833 (951)
|+||+++++.-|
T Consensus 228 l~~gG~l~~~sc 239 (286)
T PF10672_consen 228 LKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEEEEEEE-
T ss_pred cCCCCEEEEEcC
Confidence 999955554444
No 228
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.56 E-value=0.025 Score=59.88 Aligned_cols=104 Identities=16% Similarity=0.061 Sum_probs=66.3
Q ss_pred EEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCcc
Q 002226 716 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 795 (951)
Q Consensus 716 VLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFD 795 (951)
|.||||--|++..+|.+.+ ...+++++|+++..++.|++.+... +...++++..||..+.-.+....|
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~-----------~l~~~i~~rlgdGL~~l~~~e~~d 68 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKY-----------GLEDRIEVRLGDGLEVLKPGEDVD 68 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------T-TTTEEEEE-SGGGG--GGG---
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCcccEEEEECCcccccCCCCCCC
Confidence 6899999999999999998 4568999999999999999987642 334589999999765332333478
Q ss_pred EEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002226 796 IGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 796 lVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
.|+..++ .-.....+.+.....++...-+|--|+..
T Consensus 69 ~ivIAGM----GG~lI~~ILe~~~~~~~~~~~lILqP~~~ 104 (205)
T PF04816_consen 69 TIVIAGM----GGELIIEILEAGPEKLSSAKRLILQPNTH 104 (205)
T ss_dssp EEEEEEE-----HHHHHHHHHHTGGGGTT--EEEEEESS-
T ss_pred EEEEecC----CHHHHHHHHHhhHHHhccCCeEEEeCCCC
Confidence 8877665 22333444444445555443344456644
No 229
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.56 E-value=0.00051 Score=72.75 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=64.5
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
.+.++||+|.|.|..+..++... .+|++.+.|..|..+-+++ +. +| -.+.+....+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----------------~y-nV----l~~~ew~~t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----------------NY-NV----LTEIEWLQTD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----------------CC-ce----eeehhhhhcC
Confidence 45899999999999999998877 7899999999999887653 11 11 1111222234
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCC
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP 824 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKP 824 (951)
-+||+|.|..++..-. ++...+. -+..+|+|
T Consensus 168 ~k~dli~clNlLDRc~-~p~kLL~-Di~~vl~p 198 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCF-DPFKLLE-DIHLVLAP 198 (288)
T ss_pred ceeehHHHHHHHHhhc-ChHHHHH-HHHHHhcc
Confidence 5799999999998766 4545554 59999999
No 230
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=96.54 E-value=0.0071 Score=50.61 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=33.3
Q ss_pred ceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002226 56 CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 56 ~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
..|+|.+.+.+..+.+|.-+.||+|||.||+.||++|
T Consensus 32 ~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 32 PRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4899999999867777888899999999999999986
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.53 E-value=0.0063 Score=58.53 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=37.6
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
++||+|||.|.++..+++.+ +..+++++|+++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHH
Confidence 48999999999999998887 33589999999999999988764
No 232
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.48 E-value=0.023 Score=62.71 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCEEEEEcCccchhHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 712 CATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~-~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+++|+=||||.=-++. .|++.......|+++|++++.++.+++.+.... +...++.|..+|+.+.+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------GLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------------HH-SSEEEEES-GGGG-GG
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----------cccCCeEEEecchhccccc
Confidence 35699999999877664 444442233689999999999999987665211 1234799999999888766
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
...||+|+..-...--. ++...+.+.+.+.++|| .+++=
T Consensus 190 l~~~DvV~lAalVg~~~-e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 190 LKEYDVVFLAALVGMDA-EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----SEEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccCCEEEEhhhccccc-chHHHHHHHHHhhCCCCcEEEEe
Confidence 78999998776655444 34455566799999999 55553
No 233
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.012 Score=61.76 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=59.8
Q ss_pred HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002226 707 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 707 lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
.++...+.-++|||||+|..+..|++...+....++.||++.+++...+... .+..+++.++.|+..
T Consensus 38 eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~-------------~n~~~~~~V~tdl~~ 104 (209)
T KOG3191|consen 38 ELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR-------------CNRVHIDVVRTDLLS 104 (209)
T ss_pred HHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH-------------hcCCccceeehhHHh
Confidence 3444557889999999999999998876667889999999999998876543 122357778877765
Q ss_pred cCCCCCCccEEEEc
Q 002226 787 FDSRLHGFDIGTCL 800 (951)
Q Consensus 787 Lp~~d~sFDlVVci 800 (951)
--. .++.|+++.+
T Consensus 105 ~l~-~~~VDvLvfN 117 (209)
T KOG3191|consen 105 GLR-NESVDVLVFN 117 (209)
T ss_pred hhc-cCCccEEEEC
Confidence 332 3788888764
No 234
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.38 E-value=0.0042 Score=62.71 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=31.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChH
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK 748 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISee 748 (951)
.+.+|||+||+.|.++..++++.....+|+|||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4589999999999999999998744589999999775
No 235
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.28 E-value=0.014 Score=62.31 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=64.1
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC---C
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---R 790 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~---~ 790 (951)
.++|||||=+......- .+ ...|+.||+... +-.+.+.|..+.|. .
T Consensus 53 lrlLEVGals~~N~~s~--~~--~fdvt~IDLns~---------------------------~~~I~qqDFm~rplp~~~ 101 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG--WFDVTRIDLNSQ---------------------------HPGILQQDFMERPLPKNE 101 (219)
T ss_pred ceEEeecccCCCCcccc--cC--ceeeEEeecCCC---------------------------CCCceeeccccCCCCCCc
Confidence 59999998866654322 22 246999997651 11234556666554 3
Q ss_pred CCCccEEEEccccccCch-hHHHHHHHHHHHccCCC-E-----EEEEecCC
Q 002226 791 LHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-I-----LIVSTPNY 834 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-v-----LIISTPNs 834 (951)
.+.||+|+|+-||+++|. .++-.+.+.+.++|+|+ . ++|.+|..
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 568999999999999994 45566777799999998 7 78887753
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.25 E-value=0.014 Score=61.76 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
..+++|||+|.|+|-....-++.|. ..|+..|+.+..++..+-+... +.-.+.+...|... .
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~a-------------ngv~i~~~~~d~~g---~ 139 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAA-------------NGVSILFTHADLIG---S 139 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhh-------------ccceeEEeeccccC---C
Confidence 4679999999999999998888885 7899999998887777543321 22367888877755 4
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 837 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN 837 (951)
...||+++..+++..=+ ....++....+....| .++|.+|...|-
T Consensus 140 ~~~~Dl~LagDlfy~~~--~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 140 PPAFDLLLAGDLFYNHT--EADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CcceeEEEeeceecCch--HHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 57899999998754322 3334444344444556 888889986553
No 237
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.22 E-value=0.0075 Score=65.20 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=96.2
Q ss_pred cceeeeecccCC--Ch----hhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEE
Q 002226 670 LEYHITLLRVTE--PP----EDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV 743 (951)
Q Consensus 670 LEyyI~LL~v~e--p~----EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGV 743 (951)
-+.|.+|++..- |- .-+|.-..-..|+...+.. +..++..++.+|||-..|-|+.+...+++|. .+|+-|
T Consensus 88 ~~~~yKLvPt~~G~PTiEIdGIrMhrt~~tdP~~Dt~~K--v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~Vitv 163 (287)
T COG2521 88 AEHYYKLVPTPPGAPTIEIDGIRMHRTKGTDPLEDTLAK--VELVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITV 163 (287)
T ss_pred cCccEEEecCCCCCCeEEEccEEEecccCcCcHHHHHhh--hheeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEE
Confidence 566677776443 22 2345544555577665443 2344566789999999999999999999983 499999
Q ss_pred eCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc--CCCCCCccEEEEc----cccccCchhHHHHHHHH
Q 002226 744 DISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DSRLHGFDIGTCL----EVIEHMEEDEASQFGNI 817 (951)
Q Consensus 744 DISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL--p~~d~sFDlVVci----eVLEHL~dD~l~~L~ee 817 (951)
+.++..|+.|. +++... ......++++.||+.+. ++.+.+||+|+-- ..--++. ...|.++
T Consensus 164 Ekdp~VLeLa~--lNPwSr--------~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLY---seefY~E 230 (287)
T COG2521 164 EKDPNVLELAK--LNPWSR--------ELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELY---SEEFYRE 230 (287)
T ss_pred eeCCCeEEeec--cCCCCc--------cccccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHh---HHHHHHH
Confidence 99999999984 333221 12223689999999874 5678899999741 0111233 2356678
Q ss_pred HHHccCCC-EEE
Q 002226 818 VLSSFRPR-ILI 828 (951)
Q Consensus 818 L~RvLKPG-vLI 828 (951)
++|+|||| .++
T Consensus 231 l~RiLkrgGrlF 242 (287)
T COG2521 231 LYRILKRGGRLF 242 (287)
T ss_pred HHHHcCcCCcEE
Confidence 99999999 554
No 238
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.081 Score=55.58 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHhhc--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 695 PLSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 695 PL~~QR~e~VldlL~~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
|....-.+.+..++.. ..+.++||+=+|+|.++...+.++. ..++.||.+...+...++++... +
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l-----------~ 90 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL-----------G 90 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh-----------C
Confidence 4445555677777765 6889999999999999998888875 79999999999999998886532 2
Q ss_pred CCccEEEEEccccccC--CCC-CCccEEEEccccc--cCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 773 DVKSAVLFDGSITVFD--SRL-HGFDIGTCLEVIE--HMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp--~~d-~sFDlVVcieVLE--HL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...++.++.+|+...- ... ..||+|+.-==.+ .++ .......-.-.++|+|+ .+++-+..
T Consensus 91 ~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~-~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 91 LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLD-KELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhh-HHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2357888999987431 122 2499998742222 222 22222221235789999 55555443
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.083 Score=60.08 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=84.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~-~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+....+...++.+|||+..+.|.=+..++..... ...|+++|+++.-++..++++. |-+..++....
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~------------RlG~~nv~~~~ 214 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK------------RLGVRNVIVVN 214 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH------------HcCCCceEEEe
Confidence 4556778888999999999999999888877632 2457999999999999888776 34566788888
Q ss_pred ccccccCCC---CCCccEEEE------ccccccCc-------hh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002226 782 GSITVFDSR---LHGFDIGTC------LEVIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 782 GDa~dLp~~---d~sFDlVVc------ieVLEHL~-------dD-------~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.|...++.. ...||.|+. .++|.-=+ .. ....+.+...++|||| .++-+|-.
T Consensus 215 ~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 215 KDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 887655432 225999986 35552222 11 1234555688999999 77777764
No 240
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.05 E-value=0.032 Score=60.83 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=70.9
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
.+.+|+|||||-=-++....... +...++|+||+..+++...+.+... ..+.+....|+..-+ ..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l-------------~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVL-------------GVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHT-------------T-CEEEEEE-TTTSH-TT
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhh-------------CCCcceeEeeeeccC-CC
Confidence 47899999999998887666554 3479999999999999987655421 124556666765543 34
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
...|+.+..=+++-+.......-. .+...++-..++||-|-..
T Consensus 170 ~~~DlaLllK~lp~le~q~~g~g~-~ll~~~~~~~~vVSfPtrS 212 (251)
T PF07091_consen 170 EPADLALLLKTLPCLERQRRGAGL-ELLDALRSPHVVVSFPTRS 212 (251)
T ss_dssp SEESEEEEET-HHHHHHHSTTHHH-HHHHHSCESEEEEEEES--
T ss_pred CCcchhhHHHHHHHHHHHhcchHH-HHHHHhCCCeEEEeccccc
Confidence 578999999888888743332323 3666676668889988753
No 241
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.024 Score=66.46 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=83.1
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 793 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~s 793 (951)
-++|-+|||.-.+...+.+.+ ...|+-+|+|.-.++....+.. ...+...+...|+..+.+++.+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~-------------~~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA-------------KERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc-------------cCCcceEEEEecchhccCCCcc
Confidence 389999999999999988877 4789999999999988865432 1335789999999999999999
Q ss_pred ccEEEEccccccCchhHHHHH--------HHHHHHccCCC--EEEEEe
Q 002226 794 FDIGTCLEVIEHMEEDEASQF--------GNIVLSSFRPR--ILIVST 831 (951)
Q Consensus 794 FDlVVcieVLEHL~dD~l~~L--------~eeL~RvLKPG--vLIIST 831 (951)
||+|+-.+.++++..+..+.+ ..++.|+|+|| .+.++.
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 999999999999875543333 45789999998 344444
No 242
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.00 E-value=0.022 Score=60.82 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=69.8
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
+++++|||.|.|.-+..|+=.. +..+|+-+|....-+..-+.... +-+..+++++++.++++.....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~------------eL~L~nv~i~~~RaE~~~~~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKK------------ELGLENVEIVHGRAEEFGQEKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHH------------HhCCCCeEEehhhHhhcccccc
Confidence 6899999999999999887433 33669999987765544433221 1245689999999999875332
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCC
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
.||+|++-.+ ..+..+.+-+..++++|
T Consensus 135 ~~D~vtsRAv------a~L~~l~e~~~pllk~~ 161 (215)
T COG0357 135 QYDVVTSRAV------ASLNVLLELCLPLLKVG 161 (215)
T ss_pred cCcEEEeehc------cchHHHHHHHHHhcccC
Confidence 2999999887 55666777788899997
No 243
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.014 Score=68.64 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+..+--|.++-+++....++.+||+-||+|.+...+++.. .+|+||+++++.+.-|+++.. .++.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~------------~Ngi 430 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQ------------INGI 430 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcch------------hcCc
Confidence 3445566677777777788999999999999999999877 799999999999999987543 4678
Q ss_pred ccEEEEEcccccc
Q 002226 775 KSAVLFDGSITVF 787 (951)
Q Consensus 775 ~nVtf~qGDa~dL 787 (951)
.|.+|++|-++++
T Consensus 431 sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 431 SNATFIVGQAEDL 443 (534)
T ss_pred cceeeeecchhhc
Confidence 8999999966654
No 244
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.74 E-value=0.05 Score=59.93 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+...+...++.+|||+.+|.|.-+..++........|++.|++..-+...++++.. .+..++....
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r------------~g~~~v~~~~ 142 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR------------LGVFNVIVIN 142 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH------------TT-SSEEEEE
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh------------cCCceEEEEe
Confidence 3455566778889999999999999988887664457999999999999888877652 3556788888
Q ss_pred ccccccCC--CCCCccEEEE------ccccccCch--------------hHHHHHHHHHHHcc----CCC-EEEEEecC
Q 002226 782 GSITVFDS--RLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSF----RPR-ILIVSTPN 833 (951)
Q Consensus 782 GDa~dLp~--~d~sFDlVVc------ieVLEHL~d--------------D~l~~L~eeL~RvL----KPG-vLIISTPN 833 (951)
.|...... ....||.|+. .+++.+-++ .....+.+...+.+ ||| .++-+|-.
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 88876632 2346999986 334443331 11234556788999 999 66666653
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.11 Score=55.36 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-- 789 (951)
++..|+|||+..|.++..+++..+....|+|+|+.+- ....+|.++++|+.+-+.
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------------------~~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------------------KPIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------------------ccCCCceEEeeeccCccHHH
Confidence 6789999999999999999988754456999998551 122369999999987543
Q ss_pred ------CCCCccEEEEcc--------ccccCchhHHH-HHHHHHHHccCCC-EEEE-EecCCchhHHHHhh
Q 002226 790 ------RLHGFDIGTCLE--------VIEHMEEDEAS-QFGNIVLSSFRPR-ILIV-STPNYEYNAILQKS 843 (951)
Q Consensus 790 ------~d~sFDlVVcie--------VLEHL~dD~l~-~L~eeL~RvLKPG-vLII-STPNsEfN~lf~~L 843 (951)
....+|+|+|-. .+.|..--.+. ...+....+|+|| .+++ ..-..+++.++..+
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~ 172 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL 172 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH
Confidence 233479999732 23444322222 2233456799998 4444 34445566665543
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.59 E-value=0.035 Score=62.16 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=66.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
.+.+++.+...++..++|.=||.|..+..+++..+. .+|+|+|.++.+++.|++++... ..++.++
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~-------------~~R~~~i 74 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF-------------EGRVVLI 74 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc-------------CCcEEEE
Confidence 345666677677889999999999999999987533 89999999999999999887531 2378899
Q ss_pred EccccccCC-----CCCCccEEEE
Q 002226 781 DGSITVFDS-----RLHGFDIGTC 799 (951)
Q Consensus 781 qGDa~dLp~-----~d~sFDlVVc 799 (951)
+++..++.. ...++|.|+.
T Consensus 75 ~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 75 HDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred eCCHHHHHHHHHhcCCCcccEEEE
Confidence 988877542 2246788776
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.56 E-value=0.071 Score=57.34 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 698 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 698 ~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
..|...+.+.++.. .++.||||--|++..+|.+.+ +...+++.|+++..++.|.+.+.+ .+...++
T Consensus 4 ~~RL~~va~~V~~~--~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~-----------~~l~~~i 69 (226)
T COG2384 4 SKRLTTVANLVKQG--ARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKK-----------NNLSERI 69 (226)
T ss_pred hHHHHHHHHHHHcC--CceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHh-----------cCCcceE
Confidence 35888888888743 449999999999999999987 568899999999999999887753 2345689
Q ss_pred EEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccC
Q 002226 778 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFR 823 (951)
Q Consensus 778 tf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLK 823 (951)
+...+|....-..+..+|+|+..++ .-.-...+.++-...|+
T Consensus 70 ~vr~~dgl~~l~~~d~~d~ivIAGM----GG~lI~~ILee~~~~l~ 111 (226)
T COG2384 70 DVRLGDGLAVLELEDEIDVIVIAGM----GGTLIREILEEGKEKLK 111 (226)
T ss_pred EEeccCCccccCccCCcCEEEEeCC----cHHHHHHHHHHhhhhhc
Confidence 9999998443333457999977665 22333344444444554
No 248
>PRK12371 ribonuclease III; Reviewed
Probab=95.34 E-value=0.037 Score=59.68 Aligned_cols=69 Identities=26% Similarity=0.350 Sum_probs=50.4
Q ss_pred CCChHhHHHHh----ccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002226 15 KLTPKAIIVQK----FGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 15 ~~tpka~~~q~----~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (951)
..-||-.+.+. .+..-.|++.+.. . |+.. -.|.|.+.+.+-...+|.=+.||+|||.||+.||+
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~-G----------p~h~-~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~ 227 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVDSRS-G----------PDHD-PRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLE 227 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEEEee-c----------CCCC-CeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHH
Confidence 44677665433 3444678876422 1 2333 39999999988766678889999999999999999
Q ss_pred HcCCC
Q 002226 91 KLGID 95 (951)
Q Consensus 91 klg~~ 95 (951)
+||++
T Consensus 228 ~~~~~ 232 (235)
T PRK12371 228 REGVW 232 (235)
T ss_pred Hhhhh
Confidence 99984
No 249
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=95.27 E-value=0.037 Score=57.87 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=35.7
Q ss_pred CCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002226 52 QKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (951)
Q Consensus 52 q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (951)
...| .|.|.+.+.+-...+|.=+-||.|||.||+.||++|
T Consensus 136 ~H~p-~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L 175 (183)
T PHA03103 136 SHSP-TFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKI 175 (183)
T ss_pred CCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 3355 899999999988888888999999999999999997
No 250
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.19 E-value=0.21 Score=54.83 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCccchhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcc---------cccCCCCC------C-
Q 002226 711 SCATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK---------LDAAVPCT------D- 773 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~---------~~~l~Pr~------~- 773 (951)
.++.++||||||.-.+- ..+.+.. .+|+..|.++..++..++.++.. ..+ ......+. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 35679999999986553 3333444 78999999999988777665432 110 00000000 0
Q ss_pred -CccE-EEEEccccccCCCC------CCccEEEEccccccCchhH--HHHHHHHHHHccCCC-EEEE-EecC
Q 002226 774 -VKSA-VLFDGSITVFDSRL------HGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIV-STPN 833 (951)
Q Consensus 774 -~~nV-tf~qGDa~dLp~~d------~sFDlVVcieVLEHL~dD~--l~~L~eeL~RvLKPG-vLII-STPN 833 (951)
...| .++..|+.+.+.-. ..||+|++...+|-.-.+. -....+++.++|||| .+|+ ..-+
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0123 37788887755322 2499999999999887433 233345689999999 4444 4433
No 251
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=95.18 E-value=0.039 Score=57.62 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=50.2
Q ss_pred CCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHH
Q 002226 15 KLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEK 91 (951)
Q Consensus 15 ~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k 91 (951)
..-||-.+. |+.|..-.|++.+.. - |.-.| .|.+.+-+-+....+|.=+-||+|||.||+.||++
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~--G---------pdH~~-~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~ 174 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSG--G---------HDHCP-LFTCTIVVSGKVVATASGCSKKLARHAACADALTI 174 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeE--C---------CCCCc-eEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 456776654 455554578654322 1 33344 89999999887777888899999999999999999
Q ss_pred cCCC
Q 002226 92 LGID 95 (951)
Q Consensus 92 lg~~ 95 (951)
|...
T Consensus 175 L~~~ 178 (183)
T PHA02701 175 LINN 178 (183)
T ss_pred HHhh
Confidence 8543
No 252
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=0.13 Score=56.95 Aligned_cols=117 Identities=9% Similarity=0.035 Sum_probs=86.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 700 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 700 R~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
-..++..+|+..++.+|++-|.|+|.+..++++..++..+++-+|+.+.-.+.|.+.+... +-..++++
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----------gi~~~vt~ 161 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----------GIGDNVTV 161 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----------CCCcceEE
Confidence 3457888889999999999999999999999998878899999999888888887765421 34568999
Q ss_pred EEccccccCCC--CCCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEecCC
Q 002226 780 FDGSITVFDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNY 834 (951)
Q Consensus 780 ~qGDa~dLp~~--d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTPNs 834 (951)
.+-|+...-|. ...+|+|+.- ++ .+..++. .++.+||.+ .++-.+|.-
T Consensus 162 ~hrDVc~~GF~~ks~~aDaVFLD-----lP-aPw~AiP-ha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 162 THRDVCGSGFLIKSLKADAVFLD-----LP-APWEAIP-HAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred EEeecccCCccccccccceEEEc-----CC-Chhhhhh-hhHHHhhhcCceEEeccHHH
Confidence 99999876653 4678988653 22 2223444 255577765 555555543
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.03 E-value=0.16 Score=58.11 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=99.1
Q ss_pred hhhccCcccchhcccccccccceeeeecc--cCC----------------------ChhhhhhhhcCCChhHHHHHHHHH
Q 002226 650 LAAADDSARTFSLLSSRACCLEYHITLLR--VTE----------------------PPEDRMEQALFSPPLSKQRVEYAL 705 (951)
Q Consensus 650 lAa~~~~~~DiSlL~~d~~~LEyyI~LL~--v~e----------------------p~EeRye~~~F~PPL~~QR~e~Vl 705 (951)
+|+..-++.+|..-+++..+-|--|+..+ .|+ -.|.||.+..-+|++..
T Consensus 214 lat~~v~s~rit~~~eqqlygdeIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~------- 286 (508)
T COG4262 214 LATGLVASDRITHTSEQQLYGDEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSS------- 286 (508)
T ss_pred HHHHHhcccceeehHHHHhhcCceeeeccCccceEEEEEecCceEEEEcCceeeeechhhhhhheeeeccccc-------
Confidence 55566677778777777776665555542 111 01233333333333321
Q ss_pred HHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhh-hhcccccCCCCCCCccEEEEEccc
Q 002226 706 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK-LSKKLDAAVPCTDVKSAVLFDGSI 784 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~-ls~~~~~l~Pr~~~~nVtf~qGDa 784 (951)
.....+||-+|-|.|--++.+.++. ...+++-||++++|++.+++..--+ .+. -.-..++++++..|+
T Consensus 287 ----~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~------~sf~dpRv~Vv~dDA 355 (508)
T COG4262 287 ----VRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQ------GSFSDPRVTVVNDDA 355 (508)
T ss_pred ----ccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhcc------CCccCCeeEEEeccH
Confidence 1255799999999999999999987 5789999999999999998432110 110 012356899999998
Q ss_pred cccCC-CCCCccEEEE------ccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 785 TVFDS-RLHGFDIGTC------LEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 785 ~dLp~-~d~sFDlVVc------ieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
.++-. ....||+|+. ..++-.+.. ..|..-+.+.|+++++++
T Consensus 356 f~wlr~a~~~fD~vIVDl~DP~tps~~rlYS---~eFY~ll~~~l~e~Gl~V 404 (508)
T COG4262 356 FQWLRTAADMFDVVIVDLPDPSTPSIGRLYS---VEFYRLLSRHLAETGLMV 404 (508)
T ss_pred HHHHHhhcccccEEEEeCCCCCCcchhhhhh---HHHHHHHHHhcCcCceEE
Confidence 76432 3458999875 223333331 133345788899984333
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.25 Score=53.77 Aligned_cols=111 Identities=14% Similarity=0.248 Sum_probs=73.4
Q ss_pred HHHHHHHhh-cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 701 VEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 701 ~e~VldlL~-~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
+..+++... ..+++.+||+|..+|.|+..+++++. .+|+|||.....+.+--+ . .++|..
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR----------------~-d~rV~~ 127 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLR----------------N-DPRVIV 127 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHh----------------c-CCcEEE
Confidence 334444443 34788999999999999999999985 899999999888776532 1 234444
Q ss_pred -EEccccccCCC--CCCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEecCCc
Q 002226 780 -FDGSITVFDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 835 (951)
Q Consensus 780 -~qGDa~dLp~~--d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTPNsE 835 (951)
..-++..+... .+..|+++|--.+.-+. .+...+..+++|+ .+.+.-|-++
T Consensus 128 ~E~tN~r~l~~~~~~~~~d~~v~DvSFISL~-----~iLp~l~~l~~~~~~~v~LvKPQFE 183 (245)
T COG1189 128 LERTNVRYLTPEDFTEKPDLIVIDVSFISLK-----LILPALLLLLKDGGDLVLLVKPQFE 183 (245)
T ss_pred EecCChhhCCHHHcccCCCeEEEEeehhhHH-----HHHHHHHHhcCCCceEEEEecchhh
Confidence 34466555432 23678898865543333 3444688899998 4444555443
No 255
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=94.32 E-value=0.12 Score=46.97 Aligned_cols=91 Identities=29% Similarity=0.480 Sum_probs=64.1
Q ss_pred cCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhccCccc
Q 002226 579 YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSAR 658 (951)
Q Consensus 579 ~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~~~~~ 658 (951)
.|..|+.|-|.|++.+. +|+....--..+..++|.+|.+.+.+-++..+..|.+|+.+.|. +||..-|=...... .
T Consensus 4 ~~~~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~--vp~~~ayg~~~~~~-~ 79 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFY--VPPELAYGEKGLEP-P 79 (94)
T ss_dssp SBSTTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEE--EEGGGTTTTTTBCT-T
T ss_pred cCCCCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeE--eCChhhcCccccCC-C
Confidence 48999999999999996 55542222223578999999999999999999999999999988 55544333222111 1
Q ss_pred chhcccccccccceeeeec
Q 002226 659 TFSLLSSRACCLEYHITLL 677 (951)
Q Consensus 659 DiSlL~~d~~~LEyyI~LL 677 (951)
.++.+.. +.|.|.++
T Consensus 80 ---~ip~~~~-l~f~Iell 94 (94)
T PF00254_consen 80 ---KIPPNST-LVFEIELL 94 (94)
T ss_dssp ---TBTTTSE-EEEEEEEE
T ss_pred ---CcCCCCe-EEEEEEEC
Confidence 1444444 77777654
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.30 E-value=0.24 Score=55.58 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=50.7
Q ss_pred hhHHHHHHHH---HHHhhcCC-----CCEEEEEcCccchh-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccc
Q 002226 695 PLSKQRVEYA---LQHIKESC-----ATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 765 (951)
Q Consensus 695 PL~~QR~e~V---ldlL~~~k-----~krVLDIGCGeG~l-l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~ 765 (951)
|--+.|+.|+ .++|.... .-++||||+|.--. ....++..+ -+++|.||++..++.|++.+....
T Consensus 77 P~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~---- 150 (299)
T PF05971_consen 77 PPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNP---- 150 (299)
T ss_dssp --HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-----
T ss_pred CCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhcc----
Confidence 3344677664 55554332 35899999997643 222222222 699999999999999999876420
Q ss_pred ccCCCCCCCccEEEEEccccc-----cCCCCCCccEEEEccccccC
Q 002226 766 DAAVPCTDVKSAVLFDGSITV-----FDSRLHGFDIGTCLEVIEHM 806 (951)
Q Consensus 766 ~~l~Pr~~~~nVtf~qGDa~d-----Lp~~d~sFDlVVcieVLEHL 806 (951)
....+|++.+..-.. +......||+.+|+==++--
T Consensus 151 ------~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 151 ------NLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp ------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred ------ccccceEEEEcCCccccchhhhcccceeeEEecCCccccC
Confidence 123467776553222 11123579999997544433
No 257
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.87 E-value=0.3 Score=52.78 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=69.9
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHH----HHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS----LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeem----Le~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
..++.+||-+|.++|.....++.-.++...|++|+.|+.. +..|++| .||--+-+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------------------~NIiPIl~DAr 132 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------------------PNIIPILEDAR 132 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------------------TTEEEEES-TT
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------------------CceeeeeccCC
Confidence 3467899999999999999888766455799999999954 4444432 37887888887
Q ss_pred ccC---CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEe
Q 002226 786 VFD---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 831 (951)
Q Consensus 786 dLp---~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIST 831 (951)
... .--..+|+|++--. .+++...+..++..+||+| .++++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 532 12357899987544 3478888888899999998 555554
No 258
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.76 E-value=0.039 Score=50.95 Aligned_cols=98 Identities=19% Similarity=0.089 Sum_probs=37.0
Q ss_pred EEEcCccchhHHHHhcCCCCCc--eEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--CCCC
Q 002226 717 VDFGCGSGSLLDSLLDYPTALE--KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SRLH 792 (951)
Q Consensus 717 LDIGCGeG~ll~~LAk~g~~~~--qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--~~d~ 792 (951)
||||+..|..+..+++...... +++++|..+. .+.+++.+.+ .....++++++++..+.- ....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-----------~~~~~~~~~~~g~s~~~l~~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-----------AGLSDRVEFIQGDSPDFLPSLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------------------GGG-BTEEEEES-THHHHHHHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh-----------cCCCCeEEEEEcCcHHHHHHcCCC
Confidence 6899999999988876543223 7999999885 2222222211 012347999999986542 2246
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
.||+|+.-. .|-.+.....+ +.+...|+||.+|+
T Consensus 69 ~~dli~iDg--~H~~~~~~~dl-~~~~~~l~~ggviv 102 (106)
T PF13578_consen 69 PIDLIFIDG--DHSYEAVLRDL-ENALPRLAPGGVIV 102 (106)
T ss_dssp -EEEEEEES-----HHHHHHHH-HHHGGGEEEEEEEE
T ss_pred CEEEEEECC--CCCHHHHHHHH-HHHHHHcCCCeEEE
Confidence 899997654 24443444454 45889999994443
No 259
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.73 E-value=0.51 Score=54.18 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhH----HHHhcC--CCCCceEEEEeC----ChHHHHHHHHHHHhhhhcccccCCCC
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLL----DSLLDY--PTALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPC 771 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll----~~LAk~--g~~~~qVVGVDI----SeemLe~ArkrLsa~ls~~~~~l~Pr 771 (951)
+.|++.+...+.-+|+|+|.|.|.-. ..|+.+ +++.-++|||+. +...++.+.+++.......
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~l------- 172 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSL------- 172 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHc-------
Confidence 44666666667779999999999744 455544 345578999999 8899999999887665432
Q ss_pred CCCccEEEEE---ccccccCC-----CCCCccEEEEccccccCch------hHHHHHHHHHHHccCCCEEEEEecCCchh
Q 002226 772 TDVKSAVLFD---GSITVFDS-----RLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPRILIVSTPNYEYN 837 (951)
Q Consensus 772 ~~~~nVtf~q---GDa~dLp~-----~d~sFDlVVcieVLEHL~d------D~l~~L~eeL~RvLKPGvLIISTPNsEfN 837 (951)
+. ..+|.. .+++++.. ..+..=+|-|...+||+.+ .++..|++ ..+-|+|.++++..++.++|
T Consensus 173 -gv-~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n 249 (374)
T PF03514_consen 173 -GV-PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHN 249 (374)
T ss_pred -Cc-cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCC
Confidence 11 233333 23333321 2233335557778899973 24556775 77899999888888876654
No 260
>PRK10742 putative methyltransferase; Provisional
Probab=93.55 E-value=0.47 Score=52.05 Aligned_cols=110 Identities=9% Similarity=-0.034 Sum_probs=75.2
Q ss_pred hhhhcCCChhHHHHH------HHHHHHhhcCCCC--EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 687 MEQALFSPPLSKQRV------EYALQHIKESCAT--TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 687 ye~~~F~PPL~~QR~------e~VldlL~~~k~k--rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
....+|.|.....|. +.+.+.+...++. +|||+=+|.|..+..++..| ++|+++|-++......++.+.
T Consensus 55 v~vDF~~~~~a~rR~~~~g~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ 131 (250)
T PRK10742 55 IFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLA 131 (250)
T ss_pred eEEEccCchHHHHHHhcCCCccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHH
Confidence 444556666655554 6677777666666 99999999999999999998 679999999987777666554
Q ss_pred hhhhcccccCCCCCC---CccEEEEEccccccCC-CCCCccEEEEcccccc
Q 002226 759 SKLSKKLDAAVPCTD---VKSAVLFDGSITVFDS-RLHGFDIGTCLEVIEH 805 (951)
Q Consensus 759 a~ls~~~~~l~Pr~~---~~nVtf~qGDa~dLp~-~d~sFDlVVcieVLEH 805 (951)
....+ +... ..+++++++|..++-. ....||+|+.-=.+.|
T Consensus 132 ra~~~------~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 132 RGYAD------AEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred Hhhhc------cccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 31110 0111 1478999998876432 2236999987444433
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.15 Score=52.23 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
|......+-++.++...+..+.+|+|.|.|+.....++.+ ...-+|+++++-.+..++ ++.... +-.
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysr--l~a~R~---------g~~ 121 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSR--LHAWRA---------GCA 121 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHH--HHHHHH---------hcc
Confidence 4455556677888888888899999999999998888877 367899999999998874 332221 122
Q ss_pred ccEEEEEccccccCCCCCCccEEEE
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTC 799 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVc 799 (951)
....|..-|+-..+..+-.+-+|+-
T Consensus 122 k~trf~RkdlwK~dl~dy~~vviFg 146 (199)
T KOG4058|consen 122 KSTRFRRKDLWKVDLRDYRNVVIFG 146 (199)
T ss_pred cchhhhhhhhhhccccccceEEEee
Confidence 3567777777666655544444443
No 262
>PRK00102 rnc ribonuclease III; Reviewed
Probab=93.03 E-value=0.2 Score=52.83 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=46.1
Q ss_pred CCCChHhHHHH---hcc-CceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002226 14 MKLTPKAIIVQ---KFG-RNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (951)
Q Consensus 14 ~~~tpka~~~q---~~g-~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (951)
....||..+++ +-| ..-.|++.+... |...| .|.|.+-+-+-.+-+|.-+-||+|||.||+.||
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g-----------~~~~~-~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al 223 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEG-----------PAHDK-EFTVEVTVNGKELGEGTGSSKKEAEQAAAKQAL 223 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccC-----------CCCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHH
Confidence 44567766554 333 335676653221 22223 688888887756666999999999999999999
Q ss_pred HHcC
Q 002226 90 EKLG 93 (951)
Q Consensus 90 ~klg 93 (951)
++|.
T Consensus 224 ~~l~ 227 (229)
T PRK00102 224 KKLK 227 (229)
T ss_pred HHHh
Confidence 9985
No 263
>KOG2730 consensus Methylase [General function prediction only]
Probab=92.93 E-value=0.098 Score=56.45 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=57.0
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC---
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 788 (951)
....|+|.-||-|..+..++..+ ..|++|||++.-|..|+++++- | +-+.+|+|++||+.++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaei-------Y----GI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEV-------Y----GVPDRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhcccee-------e----cCCceeEEEechHHHHHHHH
Confidence 56789999999999999998888 6899999999999999887542 2 23458999999997642
Q ss_pred -CCCCCccEEEE
Q 002226 789 -SRLHGFDIGTC 799 (951)
Q Consensus 789 -~~d~sFDlVVc 799 (951)
+....+|+|+.
T Consensus 160 q~~K~~~~~vf~ 171 (263)
T KOG2730|consen 160 KADKIKYDCVFL 171 (263)
T ss_pred hhhhheeeeeec
Confidence 22223556654
No 264
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.74 E-value=0.92 Score=49.18 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
.++.+||.||-|.|.....+.+..+ .+=+-|+..++.+++.++. .++ ...+|..+.|-.++.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~------------gw~-ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDW------------GWR-EKENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhc------------ccc-cccceEEEecchHhhhcc
Confidence 5789999999999999988877653 5567789999999888653 112 2348888888777632
Q ss_pred CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCE
Q 002226 789 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI 826 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGv 826 (951)
.+++.||-|+---.-||-. |... |.+.+.|+|||+.
T Consensus 165 L~d~~FDGI~yDTy~e~yE-dl~~-~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYE-DLRH-FHQHVVRLLKPEG 200 (271)
T ss_pred ccccCcceeEeechhhHHH-HHHH-HHHHHhhhcCCCc
Confidence 3578899997543335544 5444 4457999999993
No 265
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=92.62 E-value=0.13 Score=47.03 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=34.3
Q ss_pred CCceEEEeeecCCcee----------eeccccccchHHHHHHHHHHHHcC
Q 002226 54 GPCLYRCSLQLPEFSV----------VSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 54 ~~~~~~c~l~lp~~~v----------~~~~~~~kkdaeq~aa~~al~klg 93 (951)
|..+|-|++.+|.... -+.....||||+.+||+.||..||
T Consensus 31 ~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 31 HRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred ccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5569999999998754 237788999999999999999998
No 266
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=92.33 E-value=0.27 Score=51.35 Aligned_cols=67 Identities=27% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCCChHhHHH---Hhcc-CceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002226 14 MKLTPKAIIV---QKFG-RNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (951)
Q Consensus 14 ~~~tpka~~~---q~~g-~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (951)
+..-||..++ |+.| ..-.|++.++. | |...| .|.|.+.+-+-.+.+|.-+.||+|||.||+.||
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~--------g---~~~~~-~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al 217 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEE--------G---PDHDK-EFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAAL 217 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEeccc--------C---CCCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHH
Confidence 4556776654 3333 34677665332 1 12233 899999998766777889999999999999999
Q ss_pred HHc
Q 002226 90 EKL 92 (951)
Q Consensus 90 ~kl 92 (951)
++|
T Consensus 218 ~~l 220 (220)
T TIGR02191 218 EKL 220 (220)
T ss_pred HhC
Confidence 986
No 267
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.31 E-value=0.56 Score=50.38 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=51.4
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
+.-.+.|||||-|.++..|+... |..-+.|++|-...-++.++++.+..... -.+...++.+...++..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTS-----AEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccc-----cccccccceeeeccchh
Confidence 33578999999999999999988 67889999999999999888876543211 11235567777666544
No 268
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=92.27 E-value=0.17 Score=42.21 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.4
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002226 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (951)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (951)
|+..|-.+|..++...|.|... . ..|. .....|.|+|.|.. .+
T Consensus 2 p~~~L~e~~~~~~~~~~~y~~~--~--------------------------~~g~--~~~~~f~~~v~i~~-------~~ 44 (68)
T cd00048 2 PKSLLQELAQKRGKPLPEYELV--E--------------------------EEGP--DHAPRFTVEVTVGG-------KI 44 (68)
T ss_pred hHHHHHHHHHHcCCCCCeEEEe--e--------------------------eeCC--CCCCeEEEEEEECC-------EE
Confidence 7889999999998999999876 1 0111 11245999999944 23
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002226 474 SPKEFYKKQNESIENASLKVLSWL 497 (951)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~ 497 (951)
.....-++..+|-|+||.++|..|
T Consensus 45 ~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 45 TGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred EEEeecCCHHHHHHHHHHHHHHhC
Confidence 333455678899999999999653
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.21 E-value=0.2 Score=53.51 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=57.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk---~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+.+++-..+++.|+++|--.|.-+..+|. ..+...+|+||||+-....+.+...+ ....+|+++
T Consensus 24 ~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h-------------p~~~rI~~i 90 (206)
T PF04989_consen 24 YQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH-------------PMSPRITFI 90 (206)
T ss_dssp HHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------------TTEEEE
T ss_pred HHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc-------------cccCceEEE
Confidence 33444555789999999999887765543 22234799999997655443322111 123589999
Q ss_pred EccccccCC----C--CCCccE-EEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 781 DGSITVFDS----R--LHGFDI-GTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 781 qGDa~dLp~----~--d~sFDl-VVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+||..+... . ....+- +++.+. +|..+..+..|. ..+.++++| .+||..-+
T Consensus 91 ~Gds~d~~~~~~v~~~~~~~~~vlVilDs-~H~~~hvl~eL~-~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 91 QGDSIDPEIVDQVRELASPPHPVLVILDS-SHTHEHVLAELE-AYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp ES-SSSTHHHHTSGSS----SSEEEEESS-----SSHHHHHH-HHHHT--TT-EEEETSHH
T ss_pred ECCCCCHHHHHHHHHhhccCCceEEEECC-CccHHHHHHHHH-HhCccCCCCCEEEEEecc
Confidence 999876432 1 112332 333333 455546666665 488999999 77775444
No 270
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.12 E-value=0.46 Score=53.41 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEE
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
++.+++.|...++...+|.--|.|..+..+++..++..+++|+|-++.+++.|++++..+ ..+++++
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------------~~r~~~v 78 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------------DGRVTLV 78 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------------CCcEEEE
Confidence 345677778888899999999999999999998866788999999999999999987532 2478898
Q ss_pred EccccccCCC-----CCCccEEEE
Q 002226 781 DGSITVFDSR-----LHGFDIGTC 799 (951)
Q Consensus 781 qGDa~dLp~~-----d~sFDlVVc 799 (951)
+++..++... ...+|-|+.
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEE
Confidence 8887765432 235666654
No 271
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=91.96 E-value=0.085 Score=47.95 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
+.|+..|.|-|||+=|..++=|..|+. .| |-||+++||.+- |+-+++. | ..+|..|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~------~d--G~Vpl~~i~~F~-rmk~lt~--d----------~~~i~~Al~~ 60 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMD------SD--QYVPIWTIANFN-KIKKLTT--D----------IDLIVEALRE 60 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhC------CC--CCEEHHHHhCch-hHHHHcC--C----------HHHHHHHHHh
Confidence 578999999999999999988888763 23 899999999883 5555552 1 4788888887
Q ss_pred cCCcEEeecCceeee
Q 002226 188 LSEFVVTSEGQLSIW 202 (951)
Q Consensus 188 ~~~~~~~s~~~~~~~ 202 (951)
++ .|.+++++-.|+
T Consensus 61 S~-~lev~ed~~~VR 74 (75)
T cd08031 61 SP-NVQVDEKGEKVR 74 (75)
T ss_pred CC-eEEEcCCCCccC
Confidence 66 588998877664
No 272
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.36 Score=46.07 Aligned_cols=70 Identities=27% Similarity=0.402 Sum_probs=54.0
Q ss_pred ccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceec
Q 002226 570 SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 640 (951)
Q Consensus 570 ~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~ 640 (951)
-|.--|--.||-+|-.+-+-|+--|..- +--.--...+.-|.|.||.|.|+---+.-+.||||||.++--
T Consensus 7 ~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG-~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLt 76 (108)
T KOG0544|consen 7 VISPGDGRTFPKKGQTVTVHYTGTLQDG-KKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLT 76 (108)
T ss_pred EeeCCCCcccCCCCCEEEEEEEeEecCC-cEeecccccCCCeeEEecCcceeechhhcchhccccccceee
Confidence 3433344489999999999999988653 322223334578999999999999999999999999997654
No 273
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=91.75 E-value=0.11 Score=48.95 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeeccccccccccc--CcccccchHHHHHHHHHHh
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLI--NPKVESSHLLVLTYIMRAA 185 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~--~~~~e~~p~~~~~~~~~a~ 185 (951)
+.++..|.|-|||+=|.-+.=|..|+. .|--|-||+++|+.+- |+-++++.- +| +..|-=-+..|..|.
T Consensus 3 ~~i~~QvEfYFSd~NL~~D~fL~~~~~------~~~dG~V~i~~i~~F~-rmk~l~~~~~~~~--~~~~~~~~~~I~~AL 73 (90)
T cd08030 3 EKVLRQVEFYFSDSNLPRDDFLLEEVE------EDPDGMVSLALICSFS-RMRSLLGLGGGKP--EDVPEDTLKAVAEAL 73 (90)
T ss_pred HHHHHHHHcccchhhcccCHHHHHHhc------cCCCCCEehHHHhcCh-HHHHHhhcccccc--cccchhHHHHHHHHH
Confidence 578999999999998888876666654 4556999999999984 666666432 22 222332367888888
Q ss_pred hccCCcEEeecCceeeee
Q 002226 186 TRLSEFVVTSEGQLSIWR 203 (951)
Q Consensus 186 ~~~~~~~~~s~~~~~~~~ 203 (951)
+.++ .|.+|+++.+|+|
T Consensus 74 k~S~-~levseD~~~VRR 90 (90)
T cd08030 74 RTST-LLKVSEDGKRVGR 90 (90)
T ss_pred ccCC-EEEEcCCCCccCC
Confidence 8866 5999999999987
No 274
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=91.43 E-value=0.27 Score=41.22 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=47.3
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002226 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (951)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (951)
|...|-.+|..+++ .|.|... .. . |......|.|+|.|-.+ .
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~--~~--------------------------~--g~~~~~~f~~~v~i~~~-------~ 42 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELV--KE--------------------------E--GPDHAPRFTVTVKVGGE-------Y 42 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEE--ee--------------------------e--CCCCCCcEEEEEEECCE-------E
Confidence 77899999999999 8999876 10 0 11112359999998432 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002226 474 SPKEFYKKQNESIENASLKVLSWL 497 (951)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~ 497 (951)
-....-++..+|-|+||.++|..|
T Consensus 43 ~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 43 TGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred EEEeccCCHHHHHHHHHHHHHHhc
Confidence 124456778899999999999876
No 275
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=91.23 E-value=0.34 Score=45.01 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=26.9
Q ss_pred eEEEeeecCCc----eeeeccccccchHHHHHHHHHH---HHcCCCCCCCCC
Q 002226 57 LYRCSLQLPEF----SVVSETFKKKKDAEQSAAEKAL---EKLGIDPSPNVP 101 (951)
Q Consensus 57 ~~~c~l~lp~~----~v~~~~~~~kkdaeq~aa~~al---~klg~~~~~~~~ 101 (951)
.|.|.+.||.- ++.+...+.||+|.++||-.|- .++|.=.....|
T Consensus 32 ~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~L~P 83 (90)
T PF03368_consen 32 GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDHLLP 83 (90)
T ss_dssp -EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--
T ss_pred cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 89999999972 4555789999999999998875 456653333344
No 276
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.03 E-value=0.6 Score=52.70 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=58.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+.+++.+...++...+|.=-|.|..+..+++..++ .+|+|+|.++++++.|++++.. ...++.+++
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-------------~~~r~~~~~ 75 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-------------FDDRFIFIH 75 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-------------CCTTEEEEE
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-------------ccceEEEEe
Confidence 45667777778889999999999999999987644 8999999999999999876542 235889999
Q ss_pred ccccccCC------CCCCccEEEE
Q 002226 782 GSITVFDS------RLHGFDIGTC 799 (951)
Q Consensus 782 GDa~dLp~------~d~sFDlVVc 799 (951)
++..++.. ...++|.|+.
T Consensus 76 ~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 76 GNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp S-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred ccHHHHHHHHHHccCCCccCEEEE
Confidence 88877542 2346777765
No 277
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=90.98 E-value=0.45 Score=51.74 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=54.4
Q ss_pred CCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002226 14 MKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (951)
Q Consensus 14 ~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (951)
+++.....+++++...-.|++.... . |..-| .|.=++.+.+-.+-.|.=+-||.|||.||+.||++|+
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~-g----------~~h~~-~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~ 230 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEE-G----------PAHDK-EFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLG 230 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeecc-C----------CCCCc-eEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhc
Confidence 3444556778888888999887443 1 22333 7777888888777779999999999999999999999
Q ss_pred CCC
Q 002226 94 IDP 96 (951)
Q Consensus 94 ~~~ 96 (951)
+..
T Consensus 231 ~~~ 233 (235)
T COG0571 231 VKE 233 (235)
T ss_pred ccc
Confidence 854
No 278
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=2.3 Score=47.14 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=76.2
Q ss_pred hcCCCCEEEEEcCccchhHHHHhc----CCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccc
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLD----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 784 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk----~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa 784 (951)
....+.+++|+|.|+..-++.|.+ .+ ...+.+.||+|+..+....+.+... .....|.-+.||.
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~ai~~~-----------y~~l~v~~l~~~~ 142 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATAILRE-----------YPGLEVNALCGDY 142 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHHHHHh-----------CCCCeEeehhhhH
Confidence 344678999999999887765553 33 3468999999999998766554321 1223555566665
Q ss_pred ccc-C-CCCCCcc-EEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 785 TVF-D-SRLHGFD-IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 785 ~dL-p-~~d~sFD-lVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
+.. . .+..+-- .++....|-.+.+++...|...+...++|| .+++.+--
T Consensus 143 ~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 143 ELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred HHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 431 1 1122222 334456888999999999999999999999 77766553
No 279
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=0.33 Score=50.51 Aligned_cols=121 Identities=16% Similarity=0.220 Sum_probs=75.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEc
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 782 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qG 782 (951)
++++......+++||++|.|--.++..|.....+...|.-.|=+++.++..++....... ....++....-
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~---------s~~tsc~vlrw 90 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA---------SSLTSCCVLRW 90 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc---------cccceehhhHH
Confidence 445554555678999999996666554443333568999999999999888765432211 01112211111
Q ss_pred ccc--ccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 783 SIT--VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 783 Da~--dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
... ........||+|+|.+.+- ++ +-...+.+.+.++|+|. ..++..|..
T Consensus 91 ~~~~aqsq~eq~tFDiIlaADClF-fd-E~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 91 LIWGAQSQQEQHTFDIILAADCLF-FD-EHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHhhhHHHHhhCcccEEEeccchh-HH-HHHHHHHHHHHHHhCcccceeEecCcc
Confidence 111 1112345899999988752 23 44567778899999997 777777764
No 280
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=90.41 E-value=0.5 Score=43.19 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=56.0
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCC--cc
Q 002226 393 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRD--PI 470 (951)
Q Consensus 393 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~--~~ 470 (951)
.||.+|..+|...++..|+|...+ ..|-.....|.|+|.|-.-... -+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~------------------------------~~Gp~~~~~F~ykV~i~~~~~~~~~~ 51 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVS------------------------------ESGPDHRKLFLYKVVIPGLEYPFEGS 51 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEe------------------------------ccCCCccEEEEEEEEEcCCCCCCcce
Confidence 589999999999999999998871 1122233459999999877763 34
Q ss_pred cccCc-hhhhhhhhhhHhhhhhHHHHHH
Q 002226 471 LECSP-KEFYKKQNESIENASLKVLSWL 497 (951)
Q Consensus 471 ~~~~~-~~~~~~~~dai~~a~l~~l~~~ 497 (951)
++|-+ .+-=.+-.||=.+||..+|.+|
T Consensus 52 ~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 52 IECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred EEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 55544 4555667789999999999876
No 281
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.72 E-value=14 Score=40.54 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhc---CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 698 KQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 698 ~QR~e~VldlL~~---~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
..|..++-+.+.. .....|+.+|||-=.-...+.... ...++=||. ++.++.-++.+.... ....
T Consensus 64 ~~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~-P~v~~~K~~~l~~~~---------~~~~ 131 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQ-PAVLAFKEKVLAELG---------AEPP 131 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCC-hHHHHHHHHHHHHcC---------CCCC
Confidence 3455555444432 235689999999776666553221 245666663 445655555554210 0123
Q ss_pred ccEEEEEccccc-cC--CCCCCcc-----EEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhH----HHH
Q 002226 775 KSAVLFDGSITV-FD--SRLHGFD-----IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA----ILQ 841 (951)
Q Consensus 775 ~nVtf~qGDa~d-Lp--~~d~sFD-----lVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~----lf~ 841 (951)
.+.+++..|+.+ +. ....+|| ++++-+++.+++++....+.+.+.+...|| .+++...+.--.. ...
T Consensus 132 ~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~ 211 (260)
T TIGR00027 132 AHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRA 211 (260)
T ss_pred CceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHH
Confidence 467788888751 11 1122343 788889999999988888888888888888 7766554431010 111
Q ss_pred hhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 842 KSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 842 ~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
... ............+.+++.+...| +..+||.+.-.
T Consensus 212 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~----l~~~Gw~~~~~ 248 (260)
T TIGR00027 212 PVY-------------HAARGVDGSGLVFGIDRADVAEW----LAERGWRASEH 248 (260)
T ss_pred HHH-------------HhhhcccccccccCCChhhHHHH----HHHCCCeeecC
Confidence 110 00111233445667889999976 56789988654
No 282
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.35 E-value=0.75 Score=52.75 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=63.4
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
....+++|||+|.|.|.-+.++-...+....++-++.|+..-+..- .++... ....-.+...|+..--
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~-tl~~nv-----------~t~~td~r~s~vt~dR 177 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGD-TLAENV-----------STEKTDWRASDVTEDR 177 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHH-HHHhhc-----------ccccCCCCCCccchhc
Confidence 3456789999999999988877666555567788887775444332 222111 0111122222332211
Q ss_pred CCCCCccEEEEccccccCc----hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 789 SRLHGFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~----dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.....-|.+++..+++-+- +.++..+.+.+..++.|| .++|..|.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1223345554444444333 233445777889999999 66666554
No 283
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=89.07 E-value=0.22 Score=45.78 Aligned_cols=79 Identities=28% Similarity=0.336 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHH
Q 002226 105 EAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184 (951)
Q Consensus 105 e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a 184 (951)
|.-+.|+.+|.|-|||+=|.-+.=|..|+... =|.||+++|+.+. |+.++++ | ..+|.+|
T Consensus 2 ~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-------~g~Vpl~~i~~F~-r~k~l~~--------d----~~~i~~A 61 (80)
T smart00715 2 ELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-------DGYVPISTIASFK-RVKSLTT--------D----VNLIVEA 61 (80)
T ss_pred hHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-------CCCEEhHHHhCch-hHHHHcC--------C----HHHHHHH
Confidence 45578999999999999998888776666542 3899999999985 6666664 1 4789999
Q ss_pred hhccCCcEEeecCceeeeec
Q 002226 185 ATRLSEFVVTSEGQLSIWRK 204 (951)
Q Consensus 185 ~~~~~~~~~~s~~~~~~~~~ 204 (951)
.+.++- |.+++++.-|+|.
T Consensus 62 l~~S~~-lel~~d~~~VRR~ 80 (80)
T smart00715 62 LRSSPK-LEVSEDGLKVRRR 80 (80)
T ss_pred HHhCCe-EEEcCCCCeeCcC
Confidence 988764 8899998888773
No 284
>PRK12372 ribonuclease III; Reviewed
Probab=88.98 E-value=0.85 Score=53.18 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=47.8
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCcee-eeccccccchHHHHHHHHHHHH
Q 002226 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSV-VSETFKKKKDAEQSAAEKALEK 91 (951)
Q Consensus 17 tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v-~~~~~~~kkdaeq~aa~~al~k 91 (951)
-||-.+. |+.|.. -.|++.+... |... -.|.|.+.+.+..+ .+|.=+-||.|||.||+.||++
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~G-----------p~h~-~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~k 219 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHG-----------AAHN-QQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDE 219 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeec-----------CCCC-ceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 5777654 444433 4687764332 2223 38999999998644 4688899999999999999999
Q ss_pred cCC
Q 002226 92 LGI 94 (951)
Q Consensus 92 lg~ 94 (951)
|+-
T Consensus 220 L~~ 222 (413)
T PRK12372 220 VMA 222 (413)
T ss_pred Hhc
Confidence 994
No 285
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=88.17 E-value=1.6 Score=45.52 Aligned_cols=123 Identities=15% Similarity=0.253 Sum_probs=81.5
Q ss_pred ccccccccccccccccccCCCCceeee-ccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccC
Q 002226 543 RKMGEKLLQANSINTLNAIPEHGIYCL-SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTG 618 (951)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~ 618 (951)
+.+-.......+.. .+......+... ..+++.+|..|..|+.|.+-|.+.+. +|+. ++|. ..++|.+|.+
T Consensus 49 ~~~I~~~i~~~~~~-~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~-dG~v----~~ss~~~~P~~f~vg~~ 122 (177)
T TIGR03516 49 EAAIKRIISADSIV-KYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRAL-DGDV----IYSEEELGPQTYKVDQQ 122 (177)
T ss_pred HHHHHHHHHhCCCC-CceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeC-CCCE----EEeCCCCCCEEEEeCCc
Confidence 33333333434332 233444444333 44678889999999999999999986 3432 2322 3589999999
Q ss_pred ccchhhhhhhhhccccccceecccCCchhhhhhhccCcccchhcccccccccceeeeeccc
Q 002226 619 AVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 619 a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
.+.+-++..+..|.+|+.+.|. +||...|=.-. +-..++..+. +.+-|.++..
T Consensus 123 ~vi~Gl~e~L~~Mk~Ge~~~~~--iP~~~AYG~~g-----~~~~Ippns~-L~f~IeL~~i 175 (177)
T TIGR03516 123 DLFSGLRDGLKLMKEGETATFL--FPSHKAYGYYG-----DQNKIGPNLP-IISTVTLLNI 175 (177)
T ss_pred chhHHHHHHHcCCCCCCEEEEE--ECHHHcCCCCC-----CCCCcCcCCc-EEEEEEEEEe
Confidence 9999999999999999999998 66654332211 1123555666 7777777654
No 286
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.98 E-value=1.6 Score=49.22 Aligned_cols=110 Identities=14% Similarity=0.215 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC--
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 788 (951)
..+++||-||-|.|.+.+..+++ .+..++.-+|+++..++..++.+.....++ ..++|.+.-||...+-
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy--------~~~~v~l~iGDG~~fl~~ 190 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGY--------EGKKVKLLIGDGFLFLED 190 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhccc--------CCCceEEEeccHHHHHHH
Confidence 46789999999999999999988 478999999999999999988776544332 4468999999876543
Q ss_pred CCCCCccEEEEccccccCchh---HHHHHHHHHHHccCCCEEEEE
Q 002226 789 SRLHGFDIGTCLEVIEHMEED---EASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 789 ~~d~sFDlVVcieVLEHL~dD---~l~~L~eeL~RvLKPGvLIIS 830 (951)
...+.||+|+.--. +-+.+. -...+.+-+.+.||++.++++
T Consensus 191 ~~~~~~dVii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 191 LKENPFDVIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred hccCCceEEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 23678999975322 111111 123334458899999944443
No 287
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.85 E-value=1.5 Score=47.32 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCEEEEEcCccchhHHHHhcCCCC-------CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTA-------LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~-------~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
+-+|+|+|.|+|.++..+++.... ..+++-||+|+.+.+.-++++...... ......+|.++ .++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~------~~~~~~~i~w~-~~l~ 91 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK------DTEFGDPIRWL-DDLE 91 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---------STTTCGCEEEE-SSGG
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc------ccccCCccchh-hhhh
Confidence 469999999999999776643211 258999999999988888776532100 01123467773 3544
Q ss_pred ccCCCCCCccEEEEccccccCc
Q 002226 786 VFDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLEHL~ 807 (951)
+.+ ..-+|++++++.-+|
T Consensus 92 ~~p----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 92 EVP----FPGFIIANELFDALP 109 (252)
T ss_dssp CS-----CCEEEEEESSGGGS-
T ss_pred ccc----CCEEEEEeeehhcCc
Confidence 443 567889999998888
No 288
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.78 E-value=0.25 Score=48.02 Aligned_cols=105 Identities=24% Similarity=0.398 Sum_probs=46.5
Q ss_pred CccEEEEccccccCc----hhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCchhhhhccccccCCCC
Q 002226 793 GFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 868 (951)
Q Consensus 793 sFDlVVcieVLEHL~----dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh~DH 868 (951)
.||+|+|..|.-++. ++-+..|.+.+++.|+||+++|-.|-. +..+-.+-. .....+..-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~-w~sY~~~~~--------------~~~~~~~n~~ 65 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP-WKSYKKAKR--------------LSEEIRENYK 65 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTTT--------------S-HHHHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC-cHHHHHHhh--------------hhHHHHhHHh
Confidence 489999998865443 455566777799999999766766653 343332110 0001111222
Q ss_pred ccccCHHHHHHHHHHHHHHcCcE-EEEEeecCCCCCCCCccceeeeeec
Q 002226 869 KFEWTRDQFNCWATELAARHNYS-VEFSGVGGSGDREPGFASQIAVFRS 916 (951)
Q Consensus 869 kFEWTreEFqaWae~LA~r~GYs-VEf~GVG~~p~ge~G~~TQIAVFrR 916 (951)
...+.+++|..++.+. ..||. ++..++. .....||..-|-+|+|
T Consensus 66 ~i~lrP~~F~~~L~~~--evGF~~~e~~~~~--~~~~~gF~RpI~lf~K 110 (110)
T PF06859_consen 66 SIKLRPDQFEDYLLEP--EVGFSSVEELGVP--ENSSKGFDRPIYLFRK 110 (110)
T ss_dssp H----GGGHHHHHTST--TT---EEEEE---------------EEEEE-
T ss_pred ceEEChHHHHHHHHhc--ccceEEEEEcccC--CCCCCCCCCcEEEEeC
Confidence 3458888998764421 24764 3444443 2335688888888875
No 289
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=86.84 E-value=0.29 Score=44.39 Aligned_cols=74 Identities=30% Similarity=0.372 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
+.|+.+|.|-|||+=|..++=|..|+ +. =|.||+++|+.+- |+-++|+-. ..|.+|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~------~~--~g~Vpl~~i~~F~-r~k~l~~~~------------~~i~~Al~~ 60 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM------DD--DGWVPLSLLASFN-RVKKLTTDV------------ELILEALRD 60 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc------CC--CCCEEHHHHhCch-HHHHHcCCH------------HHHHHHHHh
Confidence 46899999999999999997666666 33 3999999999884 566666422 688999988
Q ss_pred cCCcEEeecCceeeee
Q 002226 188 LSEFVVTSEGQLSIWR 203 (951)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (951)
++ .|-+++++-.|+|
T Consensus 61 s~-~lel~~~~~~Vrr 75 (75)
T cd07323 61 SS-VVEVSEDGTKVRR 75 (75)
T ss_pred CC-eEEEeCCCCccCC
Confidence 76 4888888777765
No 290
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.78 E-value=0.45 Score=46.37 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI 745 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDI 745 (951)
+....+|||||+|-+..-|...| ..=.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG---YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC---CCcccccc
Confidence 45689999999999999999888 77899995
No 291
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=85.71 E-value=4.4 Score=41.12 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=50.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-C-CCccEEEEccccccCc---------
Q 002226 739 KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L-HGFDIGTCLEVIEHME--------- 807 (951)
Q Consensus 739 qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d-~sFDlVVcieVLEHL~--------- 807 (951)
+|+|+||-+++++.+++++.+. ....++++++.+=++++.- . +.+|+++.+ |-++|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-----------~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-----------GLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-----------T-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhc-----------CCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcC
Confidence 5899999999999999998752 2334799999887776642 2 468888764 33454
Q ss_pred -hhHHHHHHHHHHHccCCCEEE
Q 002226 808 -EDEASQFGNIVLSSFRPRILI 828 (951)
Q Consensus 808 -dD~l~~L~eeL~RvLKPGvLI 828 (951)
+..+.++. .+.+.|+||+++
T Consensus 68 ~~TTl~Al~-~al~lL~~gG~i 88 (140)
T PF06962_consen 68 PETTLKALE-AALELLKPGGII 88 (140)
T ss_dssp HHHHHHHHH-HHHHHEEEEEEE
T ss_pred cHHHHHHHH-HHHHhhccCCEE
Confidence 23345554 588999998333
No 292
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.28 E-value=5.7 Score=45.36 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH---------------hhhhc--ccccCCC----
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH---------------SKLSK--KLDAAVP---- 770 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs---------------a~ls~--~~~~l~P---- 770 (951)
..-+||--|||.|+++..|+..| ..+-|=+.|--|+-...=.++ +.... ..+.+.|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G---~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG---FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc---ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 34689999999999999999988 567777888887754432221 00000 0001111
Q ss_pred -------CCCCccEEEEEccccccCCC---CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE-EecCCchhHH
Q 002226 771 -------CTDVKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV-STPNYEYNAI 839 (951)
Q Consensus 771 -------r~~~~nVtf~qGDa~dLp~~---d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII-STPNsEfN~l 839 (951)
...........||..+.-.. .+.||+|+..+.|.--. .. -.+.+.+..+||||++.| .-| +
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-Ni-leYi~tI~~iLk~GGvWiNlGP------L 298 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-NI-LEYIDTIYKILKPGGVWINLGP------L 298 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-HH-HHHHHHHHHhccCCcEEEeccc------e
Confidence 11222333455666554322 24799998765554333 22 244457999999995444 222 1
Q ss_pred HHhhccCccCCCCchhhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002226 840 LQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 896 (951)
Q Consensus 840 f~~L~~~~~~eYPde~~~~~~~~fRh~DHkFEWTreEFqaWae~LA~r~GYsVEf~G 896 (951)
+-. |.++. -....-..|.+-+++. .++...||.++..-
T Consensus 299 lYH--------F~d~~-------g~~~~~siEls~edl~----~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 299 LYH--------FEDTH-------GVENEMSIELSLEDLK----RVASHRGFEVEKER 336 (369)
T ss_pred eee--------ccCCC-------CCcccccccccHHHHH----HHHHhcCcEEEEee
Confidence 111 10000 0012234678888888 67788899997543
No 293
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=85.28 E-value=3 Score=48.92 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=77.4
Q ss_pred HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002226 707 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 707 lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
.+.+.++.+|||..+..|.-+.++|........|++.|.+..-+...+.+++. -+..+......|..+
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r------------lGv~ntiv~n~D~~e 303 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR------------LGVTNTIVSNYDGRE 303 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH------------hCCCceEEEccCccc
Confidence 34677889999999999988777765443347899999999988888777652 355667777778876
Q ss_pred cCC--CCCCccEEE----Ecc--ccccC---------------chhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 787 FDS--RLHGFDIGT----CLE--VIEHM---------------EEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 787 Lp~--~d~sFDlVV----cie--VLEHL---------------~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++. ..++||-|+ |++ |+.-- ..=+.+.| ......+++| +++-+|-.
T Consensus 304 f~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Ll-lsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 304 FPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELL-LSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHH-HHHHhhccCCcEEEEEeee
Confidence 652 123799988 444 33111 11223344 3578899999 66666653
No 294
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=84.97 E-value=1.2 Score=48.33 Aligned_cols=136 Identities=21% Similarity=0.177 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHHh--------h-----
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHS--------K----- 760 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk-~g~~~~qVVGVDISeemLe~ArkrLsa--------~----- 760 (951)
.|...-++..+.++....+-++.|-.||.|+++..+.- +......|+|-||++++|+.|++++.= +
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 34555555555666666778999999999999865431 222457899999999999999987640 0
Q ss_pred --hhc---------------ccccCCCCCCCccEEEEEccccccCC-----CCCCccEEEEc----ccccc---CchhHH
Q 002226 761 --LSK---------------KLDAAVPCTDVKSAVLFDGSITVFDS-----RLHGFDIGTCL----EVIEH---MEEDEA 811 (951)
Q Consensus 761 --ls~---------------~~~~l~Pr~~~~nVtf~qGDa~dLp~-----~d~sFDlVVci----eVLEH---L~dD~l 811 (951)
... ...++.-.++.....+.+.|+.+... .....|+|+.- +..+| .+.++.
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~ 193 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPV 193 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcH
Confidence 000 00000112345567788888876321 23346888762 12222 234667
Q ss_pred HHHHHHHHHccCCC-EEEEE
Q 002226 812 SQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 812 ~~L~eeL~RvLKPG-vLIIS 830 (951)
..|++.++.+|-.+ ++.++
T Consensus 194 ~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 194 AQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHHHHCCS-TT-EEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEe
Confidence 77888899999333 44443
No 295
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.86 E-value=4.9 Score=43.19 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=77.1
Q ss_pred HHHHHhhcCCCCEEEEEcCccchhHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEE
Q 002226 703 YALQHIKESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 779 (951)
Q Consensus 703 ~VldlL~~~k~krVLDIGCGeG~ll~~LAk---~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf 779 (951)
...+++-..++..|+++|.-.|..+.++|. ..+...+|+|+||+-..++.+..+ .++|.|
T Consensus 60 ~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------------~p~i~f 122 (237)
T COG3510 60 NYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------------VPDILF 122 (237)
T ss_pred HHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------------CCCeEE
Confidence 344455566889999999998887766553 222457999999999888776542 358999
Q ss_pred EEccccccCC-------CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 780 FDGSITVFDS-------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 780 ~qGDa~dLp~-------~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
++|+-.+... ..+.--+.+|.+.-||+. ..++.+. .+.++|.-| .+++..-|
T Consensus 123 ~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~-hvLAel~-~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 123 IEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSME-HVLAELK-LLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHH-HHHHHHH-HhhhHhhcCceEEEeccc
Confidence 9999877542 122235667778877777 5555553 577888889 66664443
No 296
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=83.48 E-value=0.49 Score=42.91 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
|.|+..|.|-|||+=|..+.=|..|+ +. =|-||+++||.+. |+-++.. | ..+|.+|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m------~~--~G~Vpl~~i~~F~-rmk~l~~--------d----~~~i~~Al~~ 60 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM------DP--EGYLPIALIASFH-RVQALTT--------D----VNLILEALKD 60 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc------CC--CCCEeHHHHhccH-HHHHHcC--------C----HHHHHHHHHc
Confidence 57899999999999999888777776 22 3889999999986 5555432 2 4577888777
Q ss_pred cCCcEEeecCceeeee
Q 002226 188 LSEFVVTSEGQLSIWR 203 (951)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (951)
++- |.+++. +|||
T Consensus 61 S~~-lev~e~--kvR~ 73 (73)
T cd08034 61 STV-VELVDE--KVRC 73 (73)
T ss_pred CCe-EEEecC--eecC
Confidence 654 888884 6654
No 297
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=83.43 E-value=0.65 Score=42.41 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
+.|+..|.|-|||+=|..+.=|..| +..+.| |.||+++|+.+. |+-+++. ...|.+|.+.
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~----~~~~~~--G~Vpl~~i~~F~-rmk~l~~-------------~~~i~~Al~~ 61 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTL----TGGSNN--GWVPIKTIASFK-RMRRFQP-------------LEAVVEALRE 61 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHH----hccCCC--CcEehHHHhCch-HHHHcCC-------------HHHHHHHHHh
Confidence 5789999999999988888655444 444444 889999999985 5555541 1788888888
Q ss_pred cCCcEEeecCceeeee
Q 002226 188 LSEFVVTSEGQLSIWR 203 (951)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (951)
++ .|.+++++--|+|
T Consensus 62 S~-~lev~~d~~~VRR 76 (76)
T cd08029 62 SE-LLEVSEDGENVRR 76 (76)
T ss_pred CC-eEEEeCCCCcccC
Confidence 76 4889998877765
No 298
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=82.92 E-value=2.4 Score=46.53 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=50.0
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC--CC
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LH 792 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~--d~ 792 (951)
+++|+-||.|.+...+.+.+ ...++++|+++..++..+++.. . .++.+|+.++... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~-----------------~-~~~~~Di~~~~~~~~~~ 61 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFP-----------------N-KLIEGDITKIDEKDFIP 61 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCC-----------------C-CCccCccccCchhhcCC
Confidence 69999999999998888776 3668899999999988866431 1 1556777776643 35
Q ss_pred CccEEEEc
Q 002226 793 GFDIGTCL 800 (951)
Q Consensus 793 sFDlVVci 800 (951)
.+|+++..
T Consensus 62 ~~D~l~~g 69 (275)
T cd00315 62 DIDLLTGG 69 (275)
T ss_pred CCCEEEeC
Confidence 79999874
No 299
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=82.90 E-value=1.3 Score=47.17 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI 745 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDI 745 (951)
.++.+|||+||..|.++....++.++...|.|||+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 36789999999999999988887778899999996
No 300
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=82.39 E-value=0.56 Score=42.93 Aligned_cols=76 Identities=32% Similarity=0.432 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
++|+..|.|-|||+=|..+.=|..|+ +.+.| |.||+++||.+- |+-++++ | ..+|..|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~----~~~~d--G~Vpl~~i~~F~-rmk~l~~--------d----~~~I~~Al~~ 62 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHV----RRNKE--GYVPIKLIASFK-KVKALTR--------D----WRVVAAALRR 62 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHh----ccCCC--CcEehHHHhcch-HHHHHcC--------C----HHHHHHHHHh
Confidence 57899999999999888876555544 33444 899999999984 5666654 1 2688889888
Q ss_pred cCCcEEeecCceeeee
Q 002226 188 LSEFVVTSEGQLSIWR 203 (951)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (951)
+.- |.+++++-=|+|
T Consensus 63 S~~-lev~~d~~~VRR 77 (77)
T cd08033 63 SSK-LVVSEDGKKVRR 77 (77)
T ss_pred CCe-EEEcCCCCccCC
Confidence 764 889988776665
No 301
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=82.17 E-value=2 Score=45.72 Aligned_cols=60 Identities=17% Similarity=0.350 Sum_probs=50.9
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002226 581 SNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 581 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
.+|++|.|.|++.+. +| +++++. .-++|.+|.+...+-||..+.-|.+|+...|. ++|.+
T Consensus 4 ~~~~vV~l~Y~l~~~-dG----~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~--l~pee 66 (196)
T PRK10737 4 AKDLVVSLAYQVRTE-DG----VLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAND 66 (196)
T ss_pred CCCCEEEEEEEEEeC-CC----CEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEE--EChHH
Confidence 688999999999994 34 367776 56899999999999999999999999998876 65554
No 302
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.93 E-value=6 Score=43.28 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=55.9
Q ss_pred cCCChhHHHHHH-------HHHHHhhcCCC--CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhh
Q 002226 691 LFSPPLSKQRVE-------YALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 761 (951)
Q Consensus 691 ~F~PPL~~QR~e-------~VldlL~~~k~--krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~l 761 (951)
.|.+.....|.. .+.+.+...++ .+|||.=+|-|.-+..++..| ++|+|++-|+-+-...+.-+....
T Consensus 45 DF~~g~~~~R~~~~~g~~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~ 121 (234)
T PF04445_consen 45 DFHPGAAAYRRKHGGGKGDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQ 121 (234)
T ss_dssp -SSSHHHHHHHHHSSGGGSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHhhcCCCccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHH
Confidence 355554444443 34444443333 489999999999999888777 799999999854433332222111
Q ss_pred hcccccCCC-CCCCccEEEEEccccc-cCCCCCCccEEEEcccccc
Q 002226 762 SKKLDAAVP-CTDVKSAVLFDGSITV-FDSRLHGFDIGTCLEVIEH 805 (951)
Q Consensus 762 s~~~~~l~P-r~~~~nVtf~qGDa~d-Lp~~d~sFDlVVcieVLEH 805 (951)
.+. .. ..-..+++++++|..+ +...+.+||+|+.-=++.|
T Consensus 122 ~~~----~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 122 QDP----ELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HST----TTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred hCc----HhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 110 00 0112489999999877 4445789999998555544
No 303
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.89 E-value=11 Score=40.94 Aligned_cols=102 Identities=9% Similarity=0.106 Sum_probs=72.3
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
..++.+||=+|..+|.....++.-.+ ...++||+.|+.+...--.... .-.|+--+.+|+....
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~--------------~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE--------------KRPNIIPILEDARKPEK 138 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH--------------hCCCceeeecccCCcHH
Confidence 34788999999999999999888764 5789999999976654433221 1136666777775432
Q ss_pred --CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 789 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 789 --~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
.--...|+|+.--. .+++.+.+..++..+||+| .++++
T Consensus 139 Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 139 YRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred hhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 12356888876433 4578888889999999998 44444
No 304
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=81.47 E-value=8.4 Score=42.49 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHH--HHHHHHHHhhhhcccccCCCCCCCccE-EEEEccccccC
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSL--SRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemL--e~ArkrLsa~ls~~~~~l~Pr~~~~nV-tf~qGDa~dLp 788 (951)
...+||++|.|+|-.+..++.... .+|+--|+...+. +..+..-...+. +.+....+ .+.=++..+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~-------~~g~~v~v~~L~Wg~~~~~~ 156 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALN-------QLGGSVIVAILVWGNALDVS 156 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhh-------hcCCceeEEEEecCCcccHh
Confidence 456899999999977776666443 7888888765433 222211111111 11111122 23334444444
Q ss_pred CCCCC-ccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002226 789 SRLHG-FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 789 ~~d~s-FDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
+.... ||+|+...++.+-.... .+...+...|..+ .+++.++-.+
T Consensus 157 ~~~~~~~DlilasDvvy~~~~~e--~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 157 FRLPNPFDLILASDVVYEEESFE--GLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred hccCCcccEEEEeeeeecCCcch--hHHHHHHHHHhcCCeEEEEEeccc
Confidence 44455 99999999876554221 1122355555555 6777777543
No 305
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=81.09 E-value=0.8 Score=41.66 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
+.+...|.|-|||+=|..+.=|..|+- . =|-||+++||.+ -|+.+ +.+ | +.+|..|.+.
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~------~--~G~Vpl~~ia~F-~rmk~----lt~----d----~~~I~~Al~~ 60 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMD------L--QGFLPISLIAGF-YRVQA----LTT----N----VDLILEALKD 60 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhC------C--CCCEeHHHHhcc-hHHHH----hcC----C----HHHHHHHHHc
Confidence 568899999999999999988887762 2 389999999998 23333 332 2 3678888888
Q ss_pred cCCcEEeecCc
Q 002226 188 LSEFVVTSEGQ 198 (951)
Q Consensus 188 ~~~~~~~s~~~ 198 (951)
++- |-++++.
T Consensus 61 S~~-ve~~~~~ 70 (73)
T cd08038 61 STE-VEIVDQK 70 (73)
T ss_pred CCe-EEEeCCc
Confidence 666 8888874
No 306
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.47 E-value=15 Score=41.45 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHh----hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 697 SKQRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 697 ~~QR~e~VldlL----~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
.-.|..++-+.+ ... ...|+-+|||-=.-...+-.. ....|+-||. ++.++.=++.+.... ..
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~-Pevi~~K~~~l~e~~---------~~ 140 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWP--KGTRVFEVDL-PEVIEFKKKLLAERG---------AT 140 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCC--CCCeEEECCC-cHHHHHHHHHhhhcC---------CC
Confidence 455666654444 333 689999999965554433221 1267778884 566666655554211 11
Q ss_pred CCccEEEEEccccccCC----CCCCcc-----EEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 773 DVKSAVLFDGSITVFDS----RLHGFD-----IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~----~d~sFD-----lVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
.+.+++++..|+.+-+. ...+|| ++++-+++.+++++....+.+.+.....|| .++...+
T Consensus 141 ~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 141 PPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 23378999999985432 234555 788899999999999999999999999999 6666654
No 307
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=78.18 E-value=3.5 Score=44.34 Aligned_cols=117 Identities=9% Similarity=0.087 Sum_probs=68.3
Q ss_pred HhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHH--HHHHhhhhcccccCCCCCCCccEEEEEccc
Q 002226 707 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA--KIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 784 (951)
Q Consensus 707 lL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ar--krLsa~ls~~~~~l~Pr~~~~nVtf~qGDa 784 (951)
+....++.+|+|+=-|.|++++.|+...++...|+++=..+...-..+ .++.... .+....|++.+-...
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~--------~e~~~aN~e~~~~~~ 114 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA--------REPVYANVEVIGKPL 114 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh--------hhhhhhhhhhhCCcc
Confidence 334567899999999999999999987766678888765553111110 1111000 011223555555555
Q ss_pred cccCCCCCCccEEEEccccc-----cCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 785 TVFDSRLHGFDIGTCLEVIE-----HMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 785 ~dLp~~d~sFDlVVcieVLE-----HL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+. ..+..|++.....-| .+.......+...+++.|||| +++|...
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 5555 344555555422211 122456667777899999999 5555443
No 308
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=77.95 E-value=4.2 Score=48.10 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=62.4
Q ss_pred CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-CC
Q 002226 714 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 792 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d~ 792 (951)
..|||||.|+|.+....++.++ -.|++++.=..|.+.|++-.++. +-.++|+++.---.+.... ..
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kn-----------g~SdkI~vInkrStev~vg~~~ 134 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKN-----------GMSDKINVINKRSTEVKVGGSS 134 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcC-----------CCccceeeeccccceeeecCcc
Confidence 4689999999999988888774 57999999999999999876532 3345677665433333221 11
Q ss_pred CccEEEEcccc-ccCchhHHHHHHHHHHHccCCC
Q 002226 793 GFDIGTCLEVI-EHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 793 sFDlVVcieVL-EHL~dD~l~~L~eeL~RvLKPG 825 (951)
.-|+++.-.+. |-+.+..+..|.....++++||
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccC
Confidence 24554432221 2222223455655556667776
No 309
>PRK11524 putative methyltransferase; Provisional
Probab=77.88 E-value=5.4 Score=43.96 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
.++..|||-=||+|..+....+.+ .+.+|+|++++.++.|++|+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 478899999999999999888877 689999999999999999975
No 310
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=77.68 E-value=3 Score=35.13 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002226 394 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 473 (951)
Q Consensus 394 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 473 (951)
|+.+|..+|+++++.-|..... ..+ +.....-|.|.|+|. + ..+-
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~-----------------------------~~~-~~~~~~~f~~~~~i~--~--~~~~- 45 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIE-----------------------------EEG-PSHHRPRFICTVYID--G--KEYG- 45 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEE-----------------------------EES-SSSSSEEEEEEEEET--T--EEEE-
T ss_pred CHHHHHHHHHHcCCCCCEEEEE-----------------------------EeC-CCCCCceEEEEEEEC--C--EEEe-
Confidence 7889999999999443333222 011 111112599999882 2 1111
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002226 474 SPKEFYKKQNESIENASLKVLSWL 497 (951)
Q Consensus 474 ~~~~~~~~~~dai~~a~l~~l~~~ 497 (951)
...-.+--+|=|.||.++|..|
T Consensus 46 --~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 46 --EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp --EEEESSHHHHHHHHHHHHHHHH
T ss_pred --EeccCCHHHHHHHHHHHHHHhC
Confidence 1222355789999999999876
No 311
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=77.27 E-value=1.8 Score=39.70 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
+.|+..|.|-|||+=|..+.=|..|+ |--|-||+++||.+- |+ |.+- .| +.+|..|.+.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~m--------d~~G~Vpi~~iasF~-ri----k~lt----~d----~~~I~~AL~~ 60 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQM--------DSDQFVPIWTVANME-GI----KKLT----TD----MDLILDVLRS 60 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhh--------CcCCCEehHHHhccH-HH----HHhc----CC----HHHHHHHHHc
Confidence 57889999999999999998887775 234999999999853 22 3221 12 3567778877
Q ss_pred cCCcEEeecCce
Q 002226 188 LSEFVVTSEGQL 199 (951)
Q Consensus 188 ~~~~~~~s~~~~ 199 (951)
++- |.+|+++-
T Consensus 61 S~~-levsedg~ 71 (75)
T cd08035 61 SPM-VQVDETGE 71 (75)
T ss_pred CCe-EEEcCCCC
Confidence 654 88888763
No 312
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=77.07 E-value=6.5 Score=40.02 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 695 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+....-.+.++.... .++..|||.=||+|..+.+..+.+ .+.+|+|++++..+.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 344444455554443 467899999999999999888887 689999999999999864
No 313
>PRK14718 ribonuclease III; Provisional
Probab=76.85 E-value=4.8 Score=47.65 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=46.5
Q ss_pred CChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCcee-eeccccccchHHHHHHHHHHH
Q 002226 16 LTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSV-VSETFKKKKDAEQSAAEKALE 90 (951)
Q Consensus 16 ~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~c~~~~~~q~~~~~~~c~l~lp~~~v-~~~~~~~kkdaeq~aa~~al~ 90 (951)
.-||-.+. |+-|.. -.|++.+... |... -.|.+.+.+.+..+ .+|.=+-||.|||.||+.||+
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esG-----------PdH~-k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~ 218 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHG-----------AAHN-QQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeec-----------CCCC-CeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHH
Confidence 35666553 344433 4787754331 2223 38999999998544 578889999999999999999
Q ss_pred HcC
Q 002226 91 KLG 93 (951)
Q Consensus 91 klg 93 (951)
+|+
T Consensus 219 kL~ 221 (467)
T PRK14718 219 EVT 221 (467)
T ss_pred Hhc
Confidence 998
No 314
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.68 E-value=5.7 Score=36.98 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=59.5
Q ss_pred CccchhHHHHhcCCCCC-ceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC----CCCCcc
Q 002226 721 CGSGSLLDSLLDYPTAL-EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----RLHGFD 795 (951)
Q Consensus 721 CGeG~ll~~LAk~g~~~-~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~----~d~sFD 795 (951)
||.|.++..+++..... ..|+.+|.+++.++.+++. .+.++.||..+... .....|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------------~~~~i~gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------------GVEVIYGDATDPEVLERAGIEKAD 64 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------------TSEEEES-TTSHHHHHHTTGGCES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------------ccccccccchhhhHHhhcCccccC
Confidence 44455555444321111 4899999999998888652 26688899987542 335677
Q ss_pred EEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002226 796 IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 842 (951)
Q Consensus 796 lVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~~ 842 (951)
.|++..- ++......-...+-+.|. .+++-..+.++...+..
T Consensus 65 ~vv~~~~-----~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 65 AVVILTD-----DDEENLLIALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp EEEEESS-----SHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred EEEEccC-----CHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 7766432 244333333456677787 77777777767666654
No 315
>PF14954 LIX1: Limb expression 1
Probab=76.13 E-value=2.4 Score=45.74 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=35.7
Q ss_pred cCCCCCceEEEeeecCCceeee--ccccccchHHHHHHHHHHHH
Q 002226 50 IPQKGPCLYRCSLQLPEFSVVS--ETFKKKKDAEQSAAEKALEK 91 (951)
Q Consensus 50 ~~q~~~~~~~c~l~lp~~~v~~--~~~~~kkdaeq~aa~~al~k 91 (951)
+|-.+| .|-|-+.||++|-.- ..|--|-.|.++||.+||=.
T Consensus 52 ~ps~~p-pyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 52 VPSPSP-PYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred cCCCCC-CeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 477788 899999999998765 67888999999999999954
No 316
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=75.58 E-value=6.9 Score=45.70 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=40.3
Q ss_pred HHHHHHHHh-hcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 700 RVEYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 700 R~e~VldlL-~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
|+--++..+ .-.+...|+|+|.|.|++++.|.=..+ ..|+|||-|+...++|++
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 443343333 335678999999999999998875543 799999999887777764
No 317
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=75.57 E-value=2.3 Score=39.50 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHH
Q 002226 103 AEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIM 182 (951)
Q Consensus 103 ~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~ 182 (951)
++|--+.|...|.|-|||+=|..+.=|..|+ ..+. =|.||+++||.+- |+-+++. | ..+|.
T Consensus 2 ~~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~----~~~~--dG~Vpl~~i~~F~-rmk~lt~--------d----~~~i~ 62 (82)
T cd08032 2 VKQLLADIAKQVDFWFGDVNLHKDRFLREQI----EKSR--DGYIDISLLVSFN-KMKKLTT--------D----GKLIA 62 (82)
T ss_pred HHHHHHHHHHHHHhhcchhhcccCHHHHHHh----cCCC--CCCEeHHHHhcch-HHHHHcC--------C----HHHHH
Confidence 3566788999999999999888887666664 3323 3899999999984 5655554 1 35788
Q ss_pred HHhhccCCcEEeecCceeeee
Q 002226 183 RAATRLSEFVVTSEGQLSIWR 203 (951)
Q Consensus 183 ~a~~~~~~~~~~s~~~~~~~~ 203 (951)
.|.+.++ .|-+++++.=|+|
T Consensus 63 ~Al~~S~-~lev~ed~~~VRR 82 (82)
T cd08032 63 RALKNSS-VVELNLEGTRIRR 82 (82)
T ss_pred HHHhcCC-EEEEcCCCCccCC
Confidence 8888866 4888988776665
No 318
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=74.67 E-value=8.2 Score=45.16 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=77.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH---hhhhcccccCCCCCCCccEEEE
Q 002226 704 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH---SKLSKKLDAAVPCTDVKSAVLF 780 (951)
Q Consensus 704 VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs---a~ls~~~~~l~Pr~~~~nVtf~ 780 (951)
+.+.++..+...-.|+|.|-|.+...++..++ ...-+|+++....-+.|..... ..+..+ ......+..+
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~f------Gk~~~~~~~i 256 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHF------GKKPNKIETI 256 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHh------CCCcCceeec
Confidence 44555666788999999999999998888773 4667899988766655543221 111111 1225578889
Q ss_pred EccccccCCC---CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE
Q 002226 781 DGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 781 qGDa~dLp~~---d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS 830 (951)
+|+..+.... ....++|+...+ -++++..-.+. +++.-+++|.-||+
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~--~Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNV--AFDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecc--cCCHHHHHhhH-HHHhhCCCcceEec
Confidence 9988765432 345788887776 34544444544 79999999944444
No 319
>PHA01634 hypothetical protein
Probab=74.22 E-value=6.6 Score=39.86 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=40.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
..+++|+|||.+-|..+.+++-.|. ..|+++++++...+..++.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhh
Confidence 4789999999999999999888875 789999999999999887654
No 320
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=74.10 E-value=20 Score=39.53 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=64.4
Q ss_pred hhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcc
Q 002226 686 RMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 764 (951)
Q Consensus 686 Rye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll~-~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~ 764 (951)
.+.+..-.|...-.|..++.+. ....+++||=+|=+.-.-+. .|.... .+|+-+||++.+++.-++....
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDLtSlA~al~~~~---~~I~VvDiDeRll~fI~~~a~~----- 89 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDLTSLALALTGLP---KRITVVDIDERLLDFINRVAEE----- 89 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHH-----
T ss_pred ccccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcHHHHHHHhhCCC---CeEEEEEcCHHHHHHHHHHHHH-----
Confidence 3555555566667777777665 34578999999965544333 232333 7999999999999988765432
Q ss_pred cccCCCCCCCccEEEEEccccc-cCCC-CCCccEEEEc--cccccCchhHHHHHHHHHHHccCC
Q 002226 765 LDAAVPCTDVKSAVLFDGSITV-FDSR-LHGFDIGTCL--EVIEHMEEDEASQFGNIVLSSFRP 824 (951)
Q Consensus 765 ~~~l~Pr~~~~nVtf~qGDa~d-Lp~~-d~sFDlVVci--eVLEHL~dD~l~~L~eeL~RvLKP 824 (951)
.+. +|+.++.|+.+ +|.. .++||++++- +++ +-+.+|...-...||.
T Consensus 90 -------~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~-----~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 90 -------EGL-PIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP-----EGLKLFLSRGIEALKG 140 (243)
T ss_dssp -------HT---EEEE---TTS---TTTSS-BSEEEE---SSH-----HHHHHHHHHHHHTB-S
T ss_pred -------cCC-ceEEEEecccccCCHHHhcCCCEEEeCCCCCH-----HHHHHHHHHHHHHhCC
Confidence 133 49999999976 4433 4789999884 443 3345666667777775
No 321
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=73.35 E-value=9.4 Score=44.31 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=73.9
Q ss_pred hhcCCChhHHHHHHHHHHH---hh---c--CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhh
Q 002226 689 QALFSPPLSKQRVEYALQH---IK---E--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 760 (951)
Q Consensus 689 ~~~F~PPL~~QR~e~Vldl---L~---~--~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ 760 (951)
...||.|....-++.-+-. +. . .+.-+|||.=+|+|-=+...++..+...+|+.-|+|+++++..+++++-
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~- 96 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL- 96 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-
Confidence 4557777666555543333 22 1 2345899999999998777666632457899999999999999887652
Q ss_pred hhcccccCCCCCCCc-cEEEEEccccccC-CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 761 LSKKLDAAVPCTDVK-SAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 761 ls~~~~~l~Pr~~~~-nVtf~qGDa~dLp-~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
. +... .+++.+.|+..+- .....||+|=. .=+. .+ .-|.+...+.++.| .+.||
T Consensus 97 -N---------~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl----DPfG-Sp-~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 97 -N---------GLEDERIEVSNMDANVLLYSRQERFDVIDL----DPFG-SP-APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -C---------T-SGCCEEEEES-HHHHHCHSTT-EEEEEE------SS----HHHHHHHHHHEEEEEEEEEE
T ss_pred -c---------cccCceEEEehhhHHHHhhhccccCCEEEe----CCCC-Cc-cHhHHHHHHHhhcCCEEEEe
Confidence 1 1112 5888888887643 24577999822 1111 22 24455688888988 55454
No 322
>PRK13699 putative methylase; Provisional
Probab=73.04 E-value=9.3 Score=41.12 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHh
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 759 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa 759 (951)
.++..|||-=||+|..+....+.+ .+.+|+|++++..+.|.+|+..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 367899999999999999888877 6899999999999999998764
No 323
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=72.51 E-value=8.5 Score=45.98 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchhHHHHhcCCCC---CceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCc-c
Q 002226 701 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA---LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-S 776 (951)
Q Consensus 701 ~e~VldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~---~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~-n 776 (951)
.+.+++++...+..+|.|--||+|.++....+.... ...++|.|++..+...|+.++- +. +.. .
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~--lh----------gi~~~ 242 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI--LH----------GIEGD 242 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH--Hh----------CCCcc
Confidence 456777777666679999999999998765543311 2568999999999999876542 11 111 3
Q ss_pred EEEEEccccccCC-----CCCCccEEEEc
Q 002226 777 AVLFDGSITVFDS-----RLHGFDIGTCL 800 (951)
Q Consensus 777 Vtf~qGDa~dLp~-----~d~sFDlVVci 800 (951)
+...++|-..-|. ....||+|+++
T Consensus 243 ~~i~~~dtl~~~~~~~~~~~~~~D~viaN 271 (489)
T COG0286 243 ANIRHGDTLSNPKHDDKDDKGKFDFVIAN 271 (489)
T ss_pred ccccccccccCCcccccCCccceeEEEeC
Confidence 4555555544332 23569988874
No 324
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=72.00 E-value=13 Score=41.43 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=68.5
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCCh----HHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ----KSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISe----emLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
..++.+||=+|.++|........-.++..-|++|+.|. +++..|+++ .||.-+.-|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------------tNiiPIiEDAr 215 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------------TNIIPIIEDAR 215 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------------CCceeeeccCC
Confidence 45789999999999999988887766778999999987 455555443 25555555664
Q ss_pred ccCC---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 786 VFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 786 dLp~---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
...- .-.-.|+|++--. ++|+...+.-+..-+||+| .++|+.-.
T Consensus 216 hP~KYRmlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 216 HPAKYRMLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred CchheeeeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 4221 1234566654322 3466666666788899998 77776543
No 325
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=71.43 E-value=6.9 Score=39.98 Aligned_cols=61 Identities=21% Similarity=0.412 Sum_probs=50.5
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002226 580 PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 647 (951)
Q Consensus 580 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 647 (951)
.++|+.+.+-|++.+. +|+ +++|. .-++|.+|.|.+.+-++..+..|.+|....|. +||++
T Consensus 5 i~~~~~V~v~Y~~~~~-dG~----v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~--ipp~~ 69 (156)
T PRK15095 5 VQSNSAVLVHFTLKLD-DGS----TAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFS--LEPEA 69 (156)
T ss_pred cCCCCEEEEEEEEEeC-CCC----EEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEE--EChHH
Confidence 3899999999999883 354 56654 45999999999999999999999999998876 65544
No 326
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=71.24 E-value=14 Score=42.60 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred hcCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc-ccc
Q 002226 709 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS-ITV 786 (951)
Q Consensus 709 ~~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD-a~d 786 (951)
+..++++|+=+|+| -|.++..+++... .+|+++|.+++-++.|++.-. -.++.+. ...
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA------------------d~~i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA------------------DHVINSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC------------------cEEEEcCCchh
Confidence 34578899999877 5667778887432 899999999999999976311 1222222 111
Q ss_pred cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEec
Q 002226 787 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 832 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTP 832 (951)
...-...||+|+..-. .+ .+ +...+.|++| ++++-.|
T Consensus 223 ~~~~~~~~d~ii~tv~-~~-------~~-~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 223 LEAVKEIADAIIDTVG-PA-------TL-EPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHHhHhhCcEEEECCC-hh-------hH-HHHHHHHhcCCEEEEECCC
Confidence 2111223999987655 22 22 2467788887 5555555
No 327
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.53 E-value=21 Score=41.60 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=81.5
Q ss_pred hhhhhcCCChhHHHHHHHHHHHhhcCC---CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhh
Q 002226 686 RMEQALFSPPLSKQRVEYALQHIKESC---ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 762 (951)
Q Consensus 686 Rye~~~F~PPL~~QR~e~VldlL~~~k---~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls 762 (951)
-.....||.|-.+--++.-+..++... ..+|||-=+|+|.=+...+...+. .+|+.-|||+++++.+++++.-
T Consensus 23 ~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~--- 98 (380)
T COG1867 23 SKRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRL--- 98 (380)
T ss_pred CCCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHh---
Confidence 445667888777665555555555444 889999999999988877776642 3899999999999999987652
Q ss_pred cccccCCCCCCCccEEEEEccccccCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEE
Q 002226 763 KKLDAAVPCTDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 830 (951)
Q Consensus 763 ~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIIS 830 (951)
+...+...+..|+..+-.. ...||+|= |.=+. .+. -|.+..++.++.| .+.++
T Consensus 99 ---------N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iDPFG-SPa-PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 99 ---------NSGEDAEVINKDANALLHELHRAFDVID----IDPFG-SPA-PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ---------cCcccceeecchHHHHHHhcCCCccEEe----cCCCC-CCc-hHHHHHHHHhhcCCEEEEE
Confidence 2233455555666554332 35677772 11122 222 3344577777776 55554
No 328
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=69.72 E-value=2.9 Score=38.80 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHH
Q 002226 105 EAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184 (951)
Q Consensus 105 e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a 184 (951)
|--..|..+|.|-|||+=|.-+.=|..|+. .. =|-||+++|+.+- |+.+++. | ..+|..|
T Consensus 3 ~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~----~~---~G~Vpl~~i~~F~-rmk~l~~--------d----~~~i~~A 62 (82)
T cd08028 3 DLEKKIIRQIEYYFGDFNLPRDKFLKEQIK----ED---DGWVPMEVMLKFN-RLKSLSS--------D----PEVIAKA 62 (82)
T ss_pred HHHHHHHHHHHhhcCHhhhccCHHHHHHHh----cc---CCCEEhHHHhCCh-hHHHhcC--------C----HHHHHHH
Confidence 345679999999999998888865555543 22 4889999999884 4554442 2 3788899
Q ss_pred hhccCC-cEEeecCceeeee
Q 002226 185 ATRLSE-FVVTSEGQLSIWR 203 (951)
Q Consensus 185 ~~~~~~-~~~~s~~~~~~~~ 203 (951)
.+.+.. .|.+++++--|+|
T Consensus 63 l~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 63 LKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHhCCCCEEEEcCCCCccCC
Confidence 998763 5888988877765
No 329
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=69.20 E-value=38 Score=38.48 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=74.5
Q ss_pred hhh-hhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhh
Q 002226 683 PED-RMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 760 (951)
Q Consensus 683 ~Ee-Rye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ 760 (951)
++. .++...+..|+.-.-........ ...+.+|+=+|||. |.++..+++.. ...+|+.+|.+++-++.|++....
T Consensus 139 pd~~~~~~aal~epla~~~~~~a~~~~-~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~- 215 (350)
T COG1063 139 PDGIDEEAAALTEPLATAYHGHAERAA-VRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGA- 215 (350)
T ss_pred CCCCChhhhhhcChhhhhhhhhhhccC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCC-
Confidence 345 66677777787775333222222 22334999999995 66666666655 347999999999999999874321
Q ss_pred hhcccccCCCCCCCccEEEEEcc-ccc--cCCC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCC--EEEEEecCC
Q 002226 761 LSKKLDAAVPCTDVKSAVLFDGS-ITV--FDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNY 834 (951)
Q Consensus 761 ls~~~~~l~Pr~~~~nVtf~qGD-a~d--Lp~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG--vLIISTPNs 834 (951)
..+.....+ ... .... ..++|+++=.-- . . ..+ +.+.++++|| +.++.++..
T Consensus 216 --------------~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G---~--~--~~~-~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 216 --------------DVVVNPSEDDAGAEILELTGGRGADVVIEAVG---S--P--PAL-DQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred --------------eEeecCccccHHHHHHHHhCCCCCCEEEECCC---C--H--HHH-HHHHHHhcCCCEEEEEeccCC
Confidence 111111111 100 1111 247998874322 1 1 133 3578899998 667777754
Q ss_pred c
Q 002226 835 E 835 (951)
Q Consensus 835 E 835 (951)
+
T Consensus 274 ~ 274 (350)
T COG1063 274 E 274 (350)
T ss_pred c
Confidence 4
No 330
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=68.71 E-value=2.8 Score=48.24 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred HHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHH---HHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 705 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA---KIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 705 ldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ar---krLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
..+....+++-|+|-=-|+|.++...+..| +.|+|.||+-.++...+ ..+.+....+ .....-+.++.
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQY------g~~~~fldvl~ 271 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQY------GSSSQFLDVLT 271 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHh------CCcchhhheee
Confidence 344455688999999999999999888888 79999999999887321 1111111111 01122466777
Q ss_pred ccccccCCC-CCCccEEEE
Q 002226 782 GSITVFDSR-LHGFDIGTC 799 (951)
Q Consensus 782 GDa~dLp~~-d~sFDlVVc 799 (951)
+|...-+.. ...||+|+|
T Consensus 272 ~D~sn~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 272 ADFSNPPLRSNLKFDAIVC 290 (421)
T ss_pred ecccCcchhhcceeeEEEe
Confidence 888777665 346999999
No 331
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=66.46 E-value=39 Score=38.39 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHhhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002226 706 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr 756 (951)
......++.+||.+|||. |..+..+++..+ ..+++++|.+++.++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 334455678999999998 888888887763 23699999999999888653
No 332
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=65.67 E-value=9.8 Score=45.73 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHhh----cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC
Q 002226 695 PLSKQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 770 (951)
Q Consensus 695 PL~~QR~e~VldlL~----~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P 770 (951)
.....|+.....++. ...-..|+|...|.|.|+.+|.+..--.-.|+-+ ..+..|...-.|
T Consensus 344 ~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR-------------- 408 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR-------------- 408 (506)
T ss_pred HHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc--------------
Confidence 455566666554443 3455789999999999999998765111223322 123333333221
Q ss_pred CCCCccEEEEEccc-cccCCCCCCccEEEEccccccCch-hHHHHHHHHHHHccCCC-EEEE
Q 002226 771 CTDVKSAVLFDGSI-TVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 771 r~~~~nVtf~qGDa-~dLp~~d~sFDlVVcieVLEHL~d-D~l~~L~eeL~RvLKPG-vLII 829 (951)
+. |-.++ |. +.++.-..+||+|-+..++.+... -.+..++-+|-|+|+|+ .+||
T Consensus 409 -GL---IG~yh-DWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 409 -GL---IGVYH-DWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred -cc---chhcc-chhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 11 11222 22 234555689999999988877653 12333344699999999 5555
No 333
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=65.43 E-value=35 Score=41.33 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 711 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
.++.+|+=+|||. |..+...++..+ .+|+++|.+++-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 4688999999995 556666666553 689999999999998865
No 334
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.31 E-value=28 Score=37.66 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 696 LSKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
+....++.+........+++||-+|.= +|.+...++... .+|+-+||.+.|-..- +
T Consensus 28 I~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~~---~~vtv~Di~p~~r~~l--------------------p 84 (254)
T COG4017 28 IAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSKA---DKVTVVDIHPFMRGFL--------------------P 84 (254)
T ss_pred HHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhccc---ceEEEecCCHHHHhcC--------------------C
Confidence 345566666666666678999999964 788887777554 7999999998764322 2
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc--------hhHHHHhhccC
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE--------YNAILQKSSST 846 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE--------fN~lf~~L~~~ 846 (951)
.+|.|..+ +-+..+.+|+|+-.--|--+.++ ..+-+.|+++|+..|..+ ||.-..++...
T Consensus 85 ~~v~Fr~~----~~~~~G~~DlivDlTGlGG~~Pe--------~L~~fnp~vfiVEdP~gn~~D~~I~eyn~T~eRlea~ 152 (254)
T COG4017 85 NNVKFRNL----LKFIRGEVDLIVDLTGLGGIEPE--------FLAKFNPKVFIVEDPKGNVFDVDIYEYNNTYERLEAF 152 (254)
T ss_pred CCccHhhh----cCCCCCceeEEEeccccCCCCHH--------HHhccCCceEEEECCCCCCCccchhhcCCHHHHHHhh
Confidence 24555543 33445778999988777777733 345678999999999653 33322222110
Q ss_pred ccCCCCchhhhhcccccc-CCCCccccCHHHHHHHHHHHHHHcC
Q 002226 847 IQEDDPDEKTQLQSCKFR-NHDHKFEWTRDQFNCWATELAARHN 889 (951)
Q Consensus 847 ~~~eYPde~~~~~~~~fR-h~DHkFEWTreEFqaWae~LA~r~G 889 (951)
.+.+ +.++...++. .....+-.|.+.++..+..+-..+|
T Consensus 153 -ee~~---k~~l~~~~~~AKTSGTmTLtv~tir~aa~~le~~~G 192 (254)
T COG4017 153 -EEKA---KVGLLKTYRKAKTSGTMTLTVDTIRDAARELESLDG 192 (254)
T ss_pred -Hhhh---hhhhhhccccccccceEEEEhHHHHHHHHHHhhhcc
Confidence 0000 1111111111 1123466788888887777776666
No 335
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.91 E-value=20 Score=40.36 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=45.5
Q ss_pred EEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-CCCc
Q 002226 716 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LHGF 794 (951)
Q Consensus 716 VLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d~sF 794 (951)
|+|+=||-|.+...|.+.+ ..-+.++|+++...+..+.+.. . .++.+|+.++... ...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----------------~-~~~~~Di~~~~~~~~~~~ 60 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----------------N-KVPFGDITKISPSDIPDF 60 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----------------C-CCCccChhhhhhhhCCCc
Confidence 6899999999999888776 2456689999998888765421 1 3345677766532 3357
Q ss_pred cEEEE
Q 002226 795 DIGTC 799 (951)
Q Consensus 795 DlVVc 799 (951)
|+++.
T Consensus 61 dvl~g 65 (315)
T TIGR00675 61 DILLG 65 (315)
T ss_pred CEEEe
Confidence 88875
No 336
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.53 E-value=12 Score=42.52 Aligned_cols=119 Identities=22% Similarity=0.219 Sum_probs=70.2
Q ss_pred CEEEEEcCccchhHHHHhcCC-------------------CCCceEEEEeCCh--HHHHHHHHHHHhh--hhcccccCC-
Q 002226 714 TTLVDFGCGSGSLLDSLLDYP-------------------TALEKIVGVDISQ--KSLSRAAKIIHSK--LSKKLDAAV- 769 (951)
Q Consensus 714 krVLDIGCGeG~ll~~LAk~g-------------------~~~~qVVGVDISe--emLe~ArkrLsa~--ls~~~~~l~- 769 (951)
.+||-||-|.|.=...|+... .+.-.|+.|||.+ ..++.-...+... ...+ ....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~-a~~~~ 166 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKY-ASAAN 166 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccc-ccccc
Confidence 699999999987655444221 0113899999977 3344433332211 0000 0000
Q ss_pred -C--CCCCccEEEEEccccccCCCC-------CCccEEEEccccccCc----hhHHHHHHHHHHHccCCC--EEEEEecC
Q 002226 770 -P--CTDVKSAVLFDGSITVFDSRL-------HGFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPR--ILIVSTPN 833 (951)
Q Consensus 770 -P--r~~~~nVtf~qGDa~dLp~~d-------~sFDlVVcieVLEHL~----dD~l~~L~eeL~RvLKPG--vLIISTPN 833 (951)
+ .....+++|.+.|+..+...+ ...|+|+..+++.-+- .... .|...+-..++|| .+|+..|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt-~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTT-KFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHH-HHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 234458999999998877532 2478888877764443 1333 4444699999999 55666665
Q ss_pred C
Q 002226 834 Y 834 (951)
Q Consensus 834 s 834 (951)
+
T Consensus 246 S 246 (315)
T PF11312_consen 246 S 246 (315)
T ss_pred C
Confidence 3
No 337
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=62.33 E-value=1.3 Score=40.59 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
+.|...|.|-|||+=|..++=|..|+ |.-|-||+++||.+. |+.++-. | +.+|..|.+.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--------d~~g~Vpi~~ia~F~-rik~Lt~--------D----~~lI~~aL~~ 60 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--------DSDQYVPIMTVANLD-HIKKLST--------D----VDLIVDVLRS 60 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--------ccCCCEehHHHhccH-HHHHhcC--------C----HHHHHHHHhh
Confidence 45788999999999999999888887 335999999999875 3333322 1 3577788888
Q ss_pred cCCcEEeecCce
Q 002226 188 LSEFVVTSEGQL 199 (951)
Q Consensus 188 ~~~~~~~s~~~~ 199 (951)
++- |.+|+.+-
T Consensus 61 S~~-vevse~g~ 71 (75)
T cd08036 61 LPL-VQVDEKGE 71 (75)
T ss_pred CCe-EEECCCCC
Confidence 664 88887654
No 338
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=61.89 E-value=22 Score=43.11 Aligned_cols=110 Identities=9% Similarity=0.075 Sum_probs=58.3
Q ss_pred CCCEEEEEcCccc-hhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccc--ccCCCCCCCccEEEEEccccc--
Q 002226 712 CATTLVDFGCGSG-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL--DAAVPCTDVKSAVLFDGSITV-- 786 (951)
Q Consensus 712 k~krVLDIGCGeG-~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~--~~l~Pr~~~~nVtf~qGDa~d-- 786 (951)
++.+|+=+|||.- ..+..+++..+ ..|+.+|.+.+-++.++. +....-... +....+++. .+....+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gY--a~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGY--AKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccc--eeecCHHHHHHH
Confidence 5689999999964 55555555432 679999999998887764 211000000 000000000 0000000000
Q ss_pred ---cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEE
Q 002226 787 ---FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILI 828 (951)
Q Consensus 787 ---Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLI 828 (951)
++.....+|+|+..-.+.--+.+ ..+.+++.+.+|||.+|
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvI 280 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVI 280 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEE
Confidence 12224679999887766554422 23446789999999333
No 339
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=61.67 E-value=5.8 Score=41.53 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHH-HHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSR-AAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~-ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
+++++-+|...=..-....+++. .+|.-||.++--++. .+.++... ..++|. .+...-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA--~~iltveyn~L~i~~~~~dr~ssi--------------~p~df~----~~~~~y~ 61 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGA--AKILTVEYNKLEIQEEFRDRLSSI--------------LPVDFA----KNWQKYA 61 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCC--ceEEEEeecccccCcccccccccc--------------cHHHHH----HHHHHhh
Confidence 45677777775555444455653 667777765422111 11111100 000110 0111124
Q ss_pred CCccEEEEccccccCc----------hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002226 792 HGFDIGTCLEVIEHME----------EDEASQFGNIVLSSFRPR-ILIVSTPNYE 835 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~----------dD~l~~L~eeL~RvLKPG-vLIISTPNsE 835 (951)
++||.+.|..+|||+. .-+...+. .+.++|||| .+++++|-..
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~-~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMA-KIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccchhhheechhccccccccCCCCCccccHHHHH-HHHHhhccCCeEEEEeecCC
Confidence 6799999999999986 12344555 489999999 8999999753
No 340
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=61.63 E-value=58 Score=38.27 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=49.5
Q ss_pred CCEEEEEcCccchhHHHHh--------cC------CCCCceEEEEeCChHHHHHHHHHHHhhhhc---ccccCC-CCCCC
Q 002226 713 ATTLVDFGCGSGSLLDSLL--------DY------PTALEKIVGVDISQKSLSRAAKIIHSKLSK---KLDAAV-PCTDV 774 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LA--------k~------g~~~~qVVGVDISeemLe~ArkrLsa~ls~---~~~~l~-Pr~~~ 774 (951)
..+|+|+|||+|.++..+. ++ ..+..+|+.-|.-..=-...-+.+...... ..+++. .....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5689999999998764332 11 112357777776432111111112110000 000000 00010
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCc
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~ 807 (951)
.=+.-+.|+.-.--++.++.+++.+...+||+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecc
Confidence 112233456656667889999999999999997
No 341
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=58.26 E-value=14 Score=43.14 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCccEEEEEccccccCC--CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEE
Q 002226 773 DVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 829 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~--~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLII 829 (951)
+.+++++.++++.+.-. +.+++|.++..+..+++++++.....+++.+.++|| .++.
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45799999999988543 468999999999999999999999999999999999 6655
No 342
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=57.76 E-value=58 Score=33.55 Aligned_cols=110 Identities=8% Similarity=0.063 Sum_probs=62.6
Q ss_pred HHHHHHHHHHh----hcCCC-CEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCC
Q 002226 698 KQRVEYALQHI----KESCA-TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 772 (951)
Q Consensus 698 ~QR~e~VldlL----~~~k~-krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~ 772 (951)
..|..++-+.+ ...++ ..|+.+|||-=.....+.... +...++-||. +++++.-++.+......
T Consensus 59 ~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~--------- 127 (183)
T PF04072_consen 59 AARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGAR--------- 127 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHH---------
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCccc---------
Confidence 34555554444 33343 499999999888777777643 1367888884 55666665665432111
Q ss_pred CCccEEEEEccccccCC---------CCCCccEEEEccccccCchhHHHHHHHHH
Q 002226 773 DVKSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIV 818 (951)
Q Consensus 773 ~~~nVtf~qGDa~dLp~---------~d~sFDlVVcieVLEHL~dD~l~~L~eeL 818 (951)
...+.+++.+|+.+... ....--++++-+|+.+++++....+.+.+
T Consensus 128 ~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 128 PPANYRYVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp HHEESSEEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCcceeEEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 01245568888875321 12334478888899999988777665543
No 343
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=56.76 E-value=3 Score=38.07 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002226 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (951)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (951)
|.|+..|.|-|||+=|..+.=|..|+- . =|-||+++||.+- |+.++- . | +.+|..|.+.
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md------~--dG~Vpi~~ia~F~-rmk~Lt----~----d----~~~I~~Al~~ 60 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMD------E--DGFLPVTLIASFH-RVQALT----T----D----ISLIIKALKD 60 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhc------c--CCCEeHHHHhcch-HHHHhc----C----C----HHHHHHHHHc
Confidence 678999999999999988887877762 2 3999999999874 333332 1 2 3567777776
Q ss_pred cCCcEEeecCc
Q 002226 188 LSEFVVTSEGQ 198 (951)
Q Consensus 188 ~~~~~~~s~~~ 198 (951)
++- |-+++..
T Consensus 61 S~~-vev~~~~ 70 (73)
T cd08037 61 SKV-VEIIDMK 70 (73)
T ss_pred CCe-EEEecch
Confidence 554 7777663
No 344
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=55.73 E-value=8.5 Score=43.19 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHH
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 751 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe 751 (951)
..+++|||+|||.|-........+. ..++..|++.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 4679999999999999887777663 68888999888773
No 345
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.53 E-value=59 Score=32.68 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcCccch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 710 ESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.....+|+++|-|-=. .+..|++++ ..|+++||.+. .|. ..++++..|+.+..
T Consensus 11 e~~~gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a~--------------------~g~~~v~DDitnP~ 64 (129)
T COG1255 11 ENARGKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TAP--------------------EGLRFVVDDITNPN 64 (129)
T ss_pred HhcCCcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cCc--------------------ccceEEEccCCCcc
Confidence 3455699999987543 356777887 89999999886 221 36788888887755
Q ss_pred CC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC
Q 002226 789 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 833 (951)
Q Consensus 789 ~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN 833 (951)
.. -.+.|+|.++-- +++-...+.+ +.+.++- -++|.+-.
T Consensus 65 ~~iY~~A~lIYSiRp----ppEl~~~ild-va~aVga-~l~I~pL~ 104 (129)
T COG1255 65 ISIYEGADLIYSIRP----PPELQSAILD-VAKAVGA-PLYIKPLT 104 (129)
T ss_pred HHHhhCccceeecCC----CHHHHHHHHH-HHHhhCC-CEEEEecC
Confidence 33 356788876543 2233334443 4444433 34444333
No 346
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=26 Score=40.77 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHH
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~-------~~~qVVGVDISeemLe~ArkrLs 758 (951)
.+..++++|.|.|.++.-+++... ...++.-|++|++..++-++.+.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 456899999999999876664320 12689999999999988877765
No 347
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=53.87 E-value=1.2e+02 Score=33.72 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCC
Q 002226 696 LSKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 774 (951)
Q Consensus 696 L~~QR~e~VldlL~~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~ 774 (951)
..+...+.+..++.....+++|=+|.= +|.+....+... ++|+-+||.+.+...-.
T Consensus 25 I~ekKa~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~---~eV~lvDI~p~lk~ll~-------------------- 81 (252)
T PF06690_consen 25 IAEKKANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKK---CEVTLVDIHPHLKELLN-------------------- 81 (252)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEEEeehHHHHHHhccC---ceEEEEeCcHHHHHHhc--------------------
Confidence 445566778888887777899999943 555555444443 59999999998766542
Q ss_pred ccEEEEEccccccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchh
Q 002226 775 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYN 837 (951)
Q Consensus 775 ~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN 837 (951)
.++.|..+ .......+|+|+-.--|--+.++ ..+-+.|+++|+..|..+++
T Consensus 82 ~~i~F~~~----~~~~~~~~DlIID~TGlGGv~~~--------~Ls~~~p~v~IVEdP~~~~s 132 (252)
T PF06690_consen 82 ENIKFMEF----RNGLEGNPDLIIDTTGLGGVDPD--------FLSKFNPKVFIVEDPKGDGS 132 (252)
T ss_pred CCCceeec----cCCCCCCCCEEEECCCCCCCCHH--------HHhccCCCEEEEECCCccCc
Confidence 24566522 11123479999988777777633 34457899999999998884
No 348
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=53.39 E-value=2.8e+02 Score=28.77 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=79.6
Q ss_pred EEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCC-----CCCCccEEEEEcccccc
Q 002226 715 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP-----CTDVKSAVLFDGSITVF 787 (951)
Q Consensus 715 rVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~P-----r~~~~nVtf~qGDa~dL 787 (951)
+|.=||+|.-. ++..++..| .+|+-+|.+++.++.+.+++...+........- .....++.+. .|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH
Confidence 46678888533 344556666 899999999999999988776533221000000 0112345533 344333
Q ss_pred CCCCCCccEEEEccccccCch--hHHHHHHHHHHHccCCCEEEEEe-cCCchhHHHHhhccCccCCCCchhhhhcccccc
Q 002226 788 DSRLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPRILIVST-PNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 864 (951)
Q Consensus 788 p~~d~sFDlVVcieVLEHL~d--D~l~~L~eeL~RvLKPGvLIIST-PNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fR 864 (951)
.+.|+|+ |-+++ +....+...+.+++.|+.++.+. ....-..+...+ ..|.. .-...|-
T Consensus 77 ----~~adlVi-----Eai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~------~~p~R---~ig~Hf~ 138 (180)
T PF02737_consen 77 ----VDADLVI-----EAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAAL------SRPER---FIGMHFF 138 (180)
T ss_dssp ----CTESEEE-----E-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS------STGGG---EEEEEE-
T ss_pred ----hhhheeh-----hhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc------CcCce---EEEEecc
Confidence 2556554 33332 22344445688888888554443 333223333322 11111 1112233
Q ss_pred CCCCc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002226 865 NHDHK--------FEWTRDQFNCWATELAARHNYSVEF 894 (951)
Q Consensus 865 h~DHk--------FEWTreEFqaWae~LA~r~GYsVEf 894 (951)
+|-|. ...|..+...++..++.+.|.....
T Consensus 139 ~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~ 176 (180)
T PF02737_consen 139 NPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVV 176 (180)
T ss_dssp SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEE
T ss_pred cccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44442 4478889999999999988876543
No 349
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=23 Score=37.32 Aligned_cols=61 Identities=25% Similarity=0.528 Sum_probs=51.3
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccccc----eEEEeccCccchhhhhhhhhccccccceecccCCchhh
Q 002226 581 SNGCLSFISYSVSLVIEGETMKELLESREE----FEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQEL 648 (951)
Q Consensus 581 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~----~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l 648 (951)
.+|+.+.|.|++.+.. | +++++..+ +.|-+|.|...+-|+..+--|.+|+-..+. +||++-
T Consensus 4 ~k~~~V~i~Y~~~~~d-g----~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~--IpPE~A 68 (174)
T COG1047 4 EKGDVVSLHYTLKVED-G----EVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVE--IPPEDA 68 (174)
T ss_pred cCCCEEEEEEEEEecC-C----cEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEE--eCchHh
Confidence 5799999999999877 5 46666644 899999999999999999999999987665 666553
No 350
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.98 E-value=33 Score=38.05 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=34.5
Q ss_pred CEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhh
Q 002226 714 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 761 (951)
Q Consensus 714 krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~l 761 (951)
.+|-=||+|. +..+..++..+ .+|+.+|.+++.++.+.+++...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~ 52 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSL 52 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHH
Confidence 4788899994 33445566776 899999999999999887766543
No 351
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.87 E-value=1.8e+02 Score=33.27 Aligned_cols=159 Identities=12% Similarity=0.021 Sum_probs=81.7
Q ss_pred CCEEEEEcCccc--hhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhccccc-CCCCCCCccEEEEEccccccCC
Q 002226 713 ATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA-AVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 713 ~krVLDIGCGeG--~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~-l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
.++|.=||+|.- .++..++..| .+|+..|++++.++.+++++...+...... ..+.....++++.. ++. .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---A 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH---H
Confidence 468999999943 3445566766 899999999999888776654332211000 00001112233221 211 1
Q ss_pred CCCCccEEEEccccccCchh--HHHHHHHHHHHccCCCEEEEEecCCchhH-HHHhhccCccCCCCchhhhhccccccCC
Q 002226 790 RLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVSTPNYEYNA-ILQKSSSTIQEDDPDEKTQLQSCKFRNH 866 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD--~l~~L~eeL~RvLKPGvLIISTPNsEfN~-lf~~L~~~~~~eYPde~~~~~~~~fRh~ 866 (951)
.....|+| +|.++++ ....+...+.+.++|+.+|-++-..-... +...+ ..|.. .-...|-++
T Consensus 80 av~~aDlV-----iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~------~~p~R---~~g~HffnP 145 (321)
T PRK07066 80 CVADADFI-----QESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARA------THPER---CVVGHPFNP 145 (321)
T ss_pred HhcCCCEE-----EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc------CCccc---EEEEecCCc
Confidence 12345655 4455532 23344466889999996433322221122 22221 11110 011223334
Q ss_pred CCc--------cccCHHHHHHHHHHHHHHcCcEE
Q 002226 867 DHK--------FEWTRDQFNCWATELAARHNYSV 892 (951)
Q Consensus 867 DHk--------FEWTreEFqaWae~LA~r~GYsV 892 (951)
-|. ..+|..+...++..++...|...
T Consensus 146 ~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 146 VYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 332 33787788888888888888544
No 352
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=52.59 E-value=65 Score=39.75 Aligned_cols=119 Identities=10% Similarity=-0.038 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCccchhHHHHhcCC------CC-----CceEEEEeCC---hHHHHHHHHHHH---hhhhcccccCCC-C-
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYP------TA-----LEKIVGVDIS---QKSLSRAAKIIH---SKLSKKLDAAVP-C- 771 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g------~~-----~~qVVGVDIS---eemLe~ArkrLs---a~ls~~~~~l~P-r- 771 (951)
.+.-+|+|+|-|+|.......+.. .+ .-+++++|.. .+.+..+.+... .....+.+...+ .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344689999999999765443211 01 2478999953 344444422110 000000000000 0
Q ss_pred --------CCCccEEEEEccccccCCC-CCCccEEEEccccc-cCchhHHHHHHHHHHHccCCCEEEE
Q 002226 772 --------TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIE-HMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 772 --------~~~~nVtf~qGDa~dLp~~-d~sFDlVVcieVLE-HL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
.+.-+++++.||+.+.-.. ...||+++.-..=- +-++-=-..+...|++.++||..++
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1122667888998764332 24699998754322 2221111344557999999994444
No 353
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=52.40 E-value=82 Score=35.02 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=33.3
Q ss_pred cCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 710 ESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 710 ~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
..++.+||=.||| .|.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 3467899999987 4556666776542 2479999999999988865
No 354
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=50.36 E-value=58 Score=37.26 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=43.8
Q ss_pred CCCEEEEEcCccchhHHHHhc--------C-------CCCCceEEEEeCChH-HHHHHHHHHHhhhhcccccCCCCCCCc
Q 002226 712 CATTLVDFGCGSGSLLDSLLD--------Y-------PTALEKIVGVDISQK-SLSRAAKIIHSKLSKKLDAAVPCTDVK 775 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk--------~-------g~~~~qVVGVDISee-mLe~ArkrLsa~ls~~~~~l~Pr~~~~ 775 (951)
+.-+|+|+||..|..+..+.. + ..+..+|+--|.-.. .-...+ .+....... . ....-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~-~l~~~~~~~----~-~~~~~ 89 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFK-SLPSFQQSL----K-KFRNY 89 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHH-CHHHHHHHH----H-HTTSE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHH-hChhhhhcc----C-CCceE
Confidence 456899999999998864431 1 112357888886332 111111 111110000 0 00111
Q ss_pred cEEEEEccccccCCCCCCccEEEEccccccCc
Q 002226 776 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 776 nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL~ 807 (951)
=+.-+-|+.-.--++.++.|++++...+||+.
T Consensus 90 f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 90 FVSGVPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EEEEEES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred EEEecCchhhhccCCCCceEEEEEechhhhcc
Confidence 23445677777778899999999999999987
No 355
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=50.05 E-value=33 Score=37.06 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=48.1
Q ss_pred EEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC-CC-
Q 002226 715 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH- 792 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~-d~- 792 (951)
+++|+=||-|.+...|.+.+ ...+.++|+++...+.-+.+. . ....+|+.+++.. ..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~------------------~-~~~~~Di~~~~~~~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANF------------------P-EVICGDITEIDPSDLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHH------------------T-EEEESHGGGCHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhcc------------------c-ccccccccccccccccc
Confidence 79999999999999998877 367889999999888876643 1 6777888876632 11
Q ss_pred CccEEEE
Q 002226 793 GFDIGTC 799 (951)
Q Consensus 793 sFDlVVc 799 (951)
.+|+++.
T Consensus 61 ~~D~l~g 67 (335)
T PF00145_consen 61 DVDLLIG 67 (335)
T ss_dssp T-SEEEE
T ss_pred cceEEEe
Confidence 5898886
No 356
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=49.96 E-value=87 Score=33.88 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=34.5
Q ss_pred hcCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 709 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 709 ~~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
....+.+||..|+| .|..+..+++..+ .+|++++.+++..+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 34566789889987 4778777777653 679999999998888754
No 357
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=49.07 E-value=1.1e+02 Score=33.50 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=50.7
Q ss_pred EEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002226 715 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 715 rVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
+|.=||+|. |.++..|.+.+ .+|+++|.+++.++.+.+. +. +.....+. . ...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~---------------g~---~~~~~~~~---~-~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIER---------------GL---VDEASTDL---S-LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHC---------------CC---cccccCCH---h-Hhc
Confidence 567789885 45667777766 6899999999888877542 00 11111111 1 124
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
..|+|+..- +.+....+.+.+...++++.++.
T Consensus 57 ~aDlVilav-----p~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 57 DCDLVILAL-----PIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCCEEEEcC-----CHHHHHHHHHHHHHhCCCCcEEE
Confidence 578776543 33333444456778888885444
No 358
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=48.47 E-value=12 Score=44.02 Aligned_cols=94 Identities=28% Similarity=0.305 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002226 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (951)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (951)
-+||---+|+..|.|-||||=|..+.=|.-|. +|+ --|.||+++||.+- ||-- ++ .|--+ |
T Consensus 136 lsedl~~kIv~QVEyyFSDenL~~d~fLlkhv----rrn--keGyVpv~~vaSFK-KvK~---LT-----rd~~~----v 196 (484)
T KOG1855|consen 136 LSEDLAAKIVDQVEYYFSDENLLKDAFLLKHV----RRN--KEGYVPVKLVASFK-KVKA---LT-----RDWKL----V 196 (484)
T ss_pred ccHHHHHHHHHHhheeeccccccchHHHHHHH----hcC--CCCceeeehhhhHH-HHHH---Hh-----hhhHH----H
Confidence 35677779999999999999888876666665 454 46999999999873 2211 11 12222 2
Q ss_pred HHHhhccCCcEEeecCceeeeecCCCChhhhhhh
Q 002226 182 MRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESS 215 (951)
Q Consensus 182 ~~a~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~ 215 (951)
--|.+ -+..+++|++.==.+|-.|+|.--.+-|
T Consensus 197 a~ALr-~S~kL~vseDgkKVrRisPlp~~~~eel 229 (484)
T KOG1855|consen 197 ADALR-KSSKLEVSEDGKKVRRISPLPEFDEEEL 229 (484)
T ss_pred HHHHh-hcceEEEccCCceeeecCCCCCcccccc
Confidence 22333 3555999999999999999986655544
No 359
>PRK10458 DNA cytosine methylase; Provisional
Probab=47.72 E-value=80 Score=37.98 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHhhcCC------CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002226 695 PLSKQRVEYALQHIKESC------ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 695 PL~~QR~e~VldlL~~~k------~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr 756 (951)
++....+..+.+++...+ .-+++|+=||.|.+...|-..+ ...|.++|+++.+.+.-+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHH
Confidence 555555566666654322 4589999999999999887766 25678999999887776554
No 360
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=47.70 E-value=71 Score=35.45 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=54.1
Q ss_pred EEEEEcCccc--hhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCC
Q 002226 715 TLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 792 (951)
Q Consensus 715 rVLDIGCGeG--~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~ 792 (951)
+|-=||+|.- .++..|++.+ .+|++.|.+++.++..++. + +.. ..+..++.....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~----------------g---~~~-~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKED----------------R---TTG-VANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHc----------------C---Ccc-cCCHHHHHhhcC
Confidence 5667898863 3556677766 7899999999877666431 0 000 012222221223
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002226 793 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 793 sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
..|+|+.. ++++....+.+.+...|++|.++|..-+..
T Consensus 59 ~~dvIi~~-----vp~~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 59 APRVVWVM-----VPHGIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred CCCEEEEE-----cCchHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 46877654 333334444456888899996666665543
No 361
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=46.09 E-value=1.5e+02 Score=34.86 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=68.8
Q ss_pred hcCCCCEEEEEcCccchhHHHHhcCCC---CCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccc
Q 002226 709 KESCATTLVDFGCGSGSLLDSLLDYPT---ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 785 (951)
Q Consensus 709 ~~~k~krVLDIGCGeG~ll~~LAk~g~---~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~ 785 (951)
...++.+|||+....|.-+..|.+... ....|++=|++..-+..-.+.+. ++ ...++.+...++.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~-~l-----------~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK-RL-----------PSPNLLVTNHDAS 219 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh-cc-----------CCcceeeecccce
Confidence 456889999999999998877765431 01389999999977766665542 21 1123334444443
Q ss_pred ccCC---------CCCCccEEEEc------cccccCc----------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 786 VFDS---------RLHGFDIGTCL------EVIEHME----------------EDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 786 dLp~---------~d~sFDlVVci------eVLEHL~----------------dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
.+|- ....||-|+|- .++.+-+ .=+. .+...-.+.||+| .++-+|-.
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~-~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQL-RILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHH-HHHHHHHHHhcCCCEEEEeccC
Confidence 3322 23469998871 2444433 1122 2334578999999 77778764
No 362
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=42.63 E-value=67 Score=39.37 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=69.9
Q ss_pred CCEEEEEcCccchhHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 713 ATTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~---g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
...|+-+|.|.|-+.....+. .....++++|+-++.++-.-+.+-- +.-..+|+++.+|+..+..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~------------~~W~~~Vtii~~DMR~w~a 435 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF------------ECWDNRVTIISSDMRKWNA 435 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch------------hhhcCeeEEEeccccccCC
Confidence 346889999999988654321 1123689999999988766544210 2344689999999999986
Q ss_pred CCCCccEEEEccccccCchhHH-HHHHHHHHHccCCCEEEEE
Q 002226 790 RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPRILIVS 830 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l-~~L~eeL~RvLKPGvLIIS 830 (951)
+....|++++ +.|--+.+.++ ..-..-+.++|||+++.|+
T Consensus 436 p~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 436 PREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 6688998875 34444443322 2222457889999955553
No 363
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=42.10 E-value=1.5e+02 Score=33.09 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeC---ChHHHHHHHH
Q 002226 711 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDI---SQKSLSRAAK 755 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDI---SeemLe~Ark 755 (951)
.++.+||=+|+|. |.++..+++..+ .+|+++|. +++-++.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH
Confidence 4678999999874 667777777654 58999986 5666666643
No 364
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=41.71 E-value=2.1e+02 Score=30.86 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=66.3
Q ss_pred CEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--
Q 002226 714 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 789 (951)
Q Consensus 714 krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-- 789 (951)
++++=+|||. +.++..|.+.+ ..|+.||.+++.++.+... ......+++|..+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d~~~~~~~~~~-----------------~~~~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRDEERVEEFLAD-----------------ELDTHVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHhhh-----------------hcceEEEEecCCCHHHHH
Confidence 4677889984 33456677777 7999999999988874331 0256788888877542
Q ss_pred --CCCCccEEEEccccccCchhHHHHHHHHHHHc-cCCCEEEEEecCCchhHHHHhh
Q 002226 790 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPRILIVSTPNYEYNAILQKS 843 (951)
Q Consensus 790 --~d~sFDlVVcieVLEHL~dD~l~~L~eeL~Rv-LKPGvLIISTPNsEfN~lf~~L 843 (951)
....+|+++..-- .|....+.-.+..- +..-.++.-+.|.++...+..+
T Consensus 61 ~agi~~aD~vva~t~-----~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~ 112 (225)
T COG0569 61 EAGIDDADAVVAATG-----NDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKL 112 (225)
T ss_pred hcCCCcCCEEEEeeC-----CCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc
Confidence 2457898876422 23444443333322 3233777777777777766643
No 365
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=40.64 E-value=1.4e+02 Score=32.89 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.7
Q ss_pred CEEEEEcCcc-c-hhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 714 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 714 krVLDIGCGe-G-~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
++|.=||+|. | .++..++..+ .+|+++|.+++.++.+++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 5788899984 2 3445666666 799999999999988776554
No 366
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=40.04 E-value=5.1e+02 Score=29.95 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=62.1
Q ss_pred CCCEEEEEcCccc-h-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC-
Q 002226 712 CATTLVDFGCGSG-S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 788 (951)
Q Consensus 712 k~krVLDIGCGeG-~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp- 788 (951)
..++|+=+|+|.= . .+..|.+.+ ..|+.+|.+++.++..++.. ..+.++.||+.+..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~~~~~-----------------~~~~~i~gd~~~~~~ 289 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIERDPERAEELAEEL-----------------PNTLVLHGDGTDQEL 289 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHC-----------------CCCeEEECCCCCHHH
Confidence 4578999999632 2 223344444 68999999999888775531 24677888887543
Q ss_pred ---CCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002226 789 ---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 841 (951)
Q Consensus 789 ---~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsEfN~lf~ 841 (951)
.....+|+|++..- ++....+...+.+.+.+..+++.+-+.++...+.
T Consensus 290 L~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 340 (453)
T PRK09496 290 LEEEGIDEADAFIALTN-----DDEANILSSLLAKRLGAKKVIALVNRPAYVDLVE 340 (453)
T ss_pred HHhcCCccCCEEEECCC-----CcHHHHHHHHHHHHhCCCeEEEEECCcchHHHHH
Confidence 12356888765322 1222333333445565665555555555544444
No 367
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=39.66 E-value=1.9e+02 Score=31.72 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=55.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch--hHHHH--hcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccE
Q 002226 702 EYALQHIKESCATTLVDFGCGSGS--LLDSL--LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 777 (951)
Q Consensus 702 e~VldlL~~~k~krVLDIGCGeG~--ll~~L--Ak~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nV 777 (951)
+|+..+......+.++++.|+-|. .+..| |.+. ...+++.|-.+++.+...++.+... +....+
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~-----------~~~~~v 98 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEA-----------GLSDVV 98 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhc-----------cccccc
Confidence 577777777788899999776543 22222 2222 2279999999988877776665421 122457
Q ss_pred EEEEccc-cccCCCCCCccEEEE
Q 002226 778 VLFDGSI-TVFDSRLHGFDIGTC 799 (951)
Q Consensus 778 tf~qGDa-~dLp~~d~sFDlVVc 799 (951)
+|+.|+. +++-....+.|+++.
T Consensus 99 Efvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 99 EFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred eEEecCCHHHHHhhccCCCEEEE
Confidence 8988885 344445667887753
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.16 E-value=1.4e+02 Score=37.06 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002226 713 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 713 ~krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
..+|+=+|||. |+.. +.|.+.+ ..++.+|.+++.++.+++. ....+.||+.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~-------------------g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRKF-------------------GMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhc-------------------CCeEEEEeCCCHHHH
Confidence 46888899884 5544 3444555 6899999999999888541 35678899987653
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002226 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 836 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEf 836 (951)
.....|++++.- ++++.....-...+.+.|+ .++.-+-+.+.
T Consensus 458 ~~agi~~A~~vvv~~-----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 458 ESAGAAKAEVLINAI-----DDPQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred HhcCCCcCCEEEEEe-----CCHHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 234677776543 2233333333466677888 66665555443
No 369
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=38.58 E-value=88 Score=35.02 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=64.6
Q ss_pred CCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhc
Q 002226 574 PDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAA 653 (951)
Q Consensus 574 ~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~ 653 (951)
...|-.|..|..+.|.|...+. +|+--..--+....++|.+ +.+++-++..+..|.+|....+. +||..-+=...
T Consensus 155 ~G~G~~p~~gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~--IP~~laYG~~g 229 (269)
T PRK10902 155 EGTGEAPKDSDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV--IPPELAYGKAG 229 (269)
T ss_pred CCCCCCCCCCCEEEEEEEEEeC-CCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEE--ECchhhCCCCC
Confidence 3446789999999999999983 5543211111134556655 56999999999999999997776 55543332221
Q ss_pred cCcccchhcccccccccceeeeecccCCCh
Q 002226 654 DDSARTFSLLSSRACCLEYHITLLRVTEPP 683 (951)
Q Consensus 654 ~~~~~DiSlL~~d~~~LEyyI~LL~v~ep~ 683 (951)
. ..++-.+. +.|-|.++.+..+.
T Consensus 230 ---~---~gIppns~-LvfeVeLl~V~~~~ 252 (269)
T PRK10902 230 ---V---PGIPANST-LVFDVELLDVKPAP 252 (269)
T ss_pred ---C---CCCCCCCc-EEEEEEEEEeccCc
Confidence 1 12445555 88889998776544
No 370
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=37.87 E-value=1.3e+02 Score=37.18 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=60.9
Q ss_pred CEEEEEcCcc-chhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC--
Q 002226 714 TTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 789 (951)
Q Consensus 714 krVLDIGCGe-G~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~-- 789 (951)
.+|+=+|+|. |... +.|.+++ .+++.+|.+++.++.+++. ....+.||+.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~-------------------g~~v~~GDat~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK---MRITVLERDISAVNLMRKY-------------------GYKVYYGDATQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhC-------------------CCeEEEeeCCCHHHHH
Confidence 4677777763 3333 3344444 6899999999999888541 35678899987542
Q ss_pred --CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002226 790 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 841 (951)
Q Consensus 790 --~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNsEfN~lf~ 841 (951)
.-...|++++.-- +++.....-...|.+.|. .++.-+-+.+....+.
T Consensus 459 ~agi~~A~~vv~~~~-----d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~ 508 (601)
T PRK03659 459 AAGAEKAEAIVITCN-----EPEDTMKIVELCQQHFPHLHILARARGRVEAHELL 508 (601)
T ss_pred hcCCccCCEEEEEeC-----CHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence 2346777665322 233232222356677888 6666666654444444
No 371
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=37.84 E-value=62 Score=37.12 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=51.2
Q ss_pred CccEEEEEccccccCC--CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEec
Q 002226 774 VKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 774 ~~nVtf~qGDa~dLp~--~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTP 832 (951)
..+|.+.++|+.++-. +.+++|.++..++-.+|++.++..+..++.+-+.+| .+|+-|.
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 3479999999988765 678999999999999999999999999999999999 7776543
No 372
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=37.67 E-value=93 Score=35.35 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 711 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+++..+|+|.-.|.++..|.+++ -.|++||... |.+.- . ....|+-...|...+.+.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~-ma~sL---~---------------dtg~v~h~r~DGfk~~P~ 267 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP-MAQSL---M---------------DTGQVTHLREDGFKFRPT 267 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc---eEEEEeccch-hhhhh---h---------------cccceeeeeccCcccccC
Confidence 478899999999999999999988 7999999533 32211 1 123677777777776655
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCC
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 825 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG 825 (951)
....|-.+|-.| ++-......|..+|..|
T Consensus 268 r~~idWmVCDmV------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 268 RSNIDWMVCDMV------EKPARVAALIAKWLVNG 296 (358)
T ss_pred CCCCceEEeehh------cCcHHHHHHHHHHHHcc
Confidence 677899998777 33334444567777776
No 373
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=37.52 E-value=54 Score=35.14 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=51.0
Q ss_pred CccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhh
Q 002226 577 GIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELI 649 (951)
Q Consensus 577 ~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~ 649 (951)
|-.|..|+.+-|.|...|. +|+ +++| ..-++|.+| .+++-++..+..|.+|-.+.|. +||..-+
T Consensus 114 G~~p~~~d~V~v~Y~g~l~-dG~----vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~--IP~~lAY 181 (206)
T PRK11570 114 GAIPARTDRVRVHYTGKLI-DGT----VFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT--IPHELAY 181 (206)
T ss_pred CCCCCCCCEEEEEEEEEEC-CCC----EEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE--ECHHHcC
Confidence 6789999999999999995 554 3444 345788885 6899999999999999998887 7666443
No 374
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.15 E-value=1.4e+02 Score=32.57 Aligned_cols=163 Identities=13% Similarity=0.073 Sum_probs=80.0
Q ss_pred CEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC--CC---CCCccEEEEEccccc
Q 002226 714 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--PC---TDVKSAVLFDGSITV 786 (951)
Q Consensus 714 krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~--Pr---~~~~nVtf~qGDa~d 786 (951)
.+|.=||+|. +.++..+++.+ .+|+++|++++.++.+.+++.+.+....+... .. ....++++. .|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH-
Confidence 4678889984 44556677776 68999999999998776554433221100000 00 000122221 2221
Q ss_pred cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec-CCchhHHHHhhccCccCCCCchhhhhccccccC
Q 002226 787 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP-NYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN 865 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP-NsEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh 865 (951)
.....|+|+-. +-+.+. ....+.+.+.+.++|+.++++.- ...-..+...+ . ....+ -...+-+
T Consensus 79 ---~~~~aDlVi~a-v~e~~~--~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~-~-~~~r~-------ig~h~~~ 143 (282)
T PRK05808 79 ---DLKDADLVIEA-ATENMD--LKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT-K-RPDKV-------IGMHFFN 143 (282)
T ss_pred ---HhccCCeeeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh-C-CCcce-------EEeeccC
Confidence 13456776543 212222 12344556888999995554433 33333332222 1 00000 0000111
Q ss_pred CCCc--------cccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002226 866 HDHK--------FEWTRDQFNCWATELAARHNYSVEFSG 896 (951)
Q Consensus 866 ~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~G 896 (951)
+-|. -..|..+....+..+....|..+...+
T Consensus 144 P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~ 182 (282)
T PRK05808 144 PVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182 (282)
T ss_pred CcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence 1110 124556666677788888888876653
No 375
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=35.80 E-value=74 Score=36.77 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 712 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 712 k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
.+.+|+=+|+| .|..+...++..+ .+|+.+|.+++-++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHH
Confidence 56789999998 4555555554432 589999999877665543
No 376
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=35.29 E-value=44 Score=41.49 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCCh
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 747 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISe 747 (951)
+...|||+||..|.++....+..+...-|+|||+-+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 567899999999999988887775567899999865
No 377
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=34.60 E-value=1.4e+02 Score=32.59 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=33.5
Q ss_pred hhcCCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 708 IKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 708 L~~~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
+...++.+||-.|||. |..+..+++..+ ...+++++.+++..+.+++
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA 208 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 3333778999999886 677777776542 1379999998888876543
No 378
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=34.43 E-value=53 Score=31.74 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=24.1
Q ss_pred EEcCccc--hhHHHHh-cCCCCCceEEEEeCChHHHHHHHHH
Q 002226 718 DFGCGSG--SLLDSLL-DYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 718 DIGCGeG--~ll~~LA-k~g~~~~qVVGVDISeemLe~Arkr 756 (951)
|||++.| .....++ +...+..+|+++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2222447899999999998888776
No 379
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=34.14 E-value=3.1e+02 Score=34.58 Aligned_cols=163 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred CCEEEEEcCccc--hhHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccC--CCC---CCCccEEEEEccc
Q 002226 713 ATTLVDFGCGSG--SLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPC---TDVKSAVLFDGSI 784 (951)
Q Consensus 713 ~krVLDIGCGeG--~ll~~LA-k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l--~Pr---~~~~nVtf~qGDa 784 (951)
.++|.=||+|.- ..+..++ ..+ ..|+-+|++++.++.+.+++...+....... .+. ....++++.. |.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG---LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch
Confidence 468999999973 3344455 555 7999999999999998776654432210000 000 0112343331 22
Q ss_pred cccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec-CCchhHHHHhhccCccCCCCchhhhhccccc
Q 002226 785 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP-NYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 863 (951)
Q Consensus 785 ~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP-NsEfN~lf~~L~~~~~~eYPde~~~~~~~~f 863 (951)
. ...+.|+|+=. +.|.++ ....+..++-++++|+.++.++- ...-..+.... ..|.. .-...|
T Consensus 385 ~----~~~~aDlViEa-v~E~~~--~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~------~~p~r---~ig~Hf 448 (708)
T PRK11154 385 R----GFKHADVVIEA-VFEDLA--LKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAA------ARPEQ---VIGLHY 448 (708)
T ss_pred H----HhccCCEEeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhc------Ccccc---eEEEec
Confidence 1 22456666432 333333 22344456889999995554433 22222233322 11110 011223
Q ss_pred cCCCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 864 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 864 Rh~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
-+|-|. ..-|..+...++..++.+.|......
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v 488 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVV 488 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 333332 23566677777778888888765543
No 380
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.12 E-value=1.4e+02 Score=30.98 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=43.1
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCcc--ch-hHHHHhcCCCCCceEEEEeCCh
Q 002226 690 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS--GS-LLDSLLDYPTALEKIVGVDISQ 747 (951)
Q Consensus 690 ~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGe--G~-ll~~LAk~g~~~~qVVGVDISe 747 (951)
..|.|.+...-.+.+.+......+++||=+|.|. |. .+..|.+.+ .+|+.++-+.
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~~ 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSKT 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECCc
Confidence 5788999988888777776677899999999995 77 556666666 5788888653
No 381
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.97 E-value=4.8e+02 Score=28.71 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=30.8
Q ss_pred CEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002226 714 TTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKII 757 (951)
Q Consensus 714 krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrL 757 (951)
++|.=||+|.-. ++..+++.+ .+|+.+|++++.++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHH
Confidence 578889998533 344556665 68999999999998887654
No 382
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=33.11 E-value=1.5e+02 Score=35.88 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCccchhHHHHh--cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 711 SCATTLVDFGCGSGSLLDSLL--DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~~LA--k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
..+..+.|+|.|.|.-...+. ... ....++-||.|..|+......+... .. .+.| ...++.+..+- +|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~-~~---~g~~--~v~~~~~~r~~---~p 268 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDG-SH---IGEP--IVRKLVFHRQR---LP 268 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcCh-hh---cCch--hccccchhccc---CC
Confidence 456778888888666544333 222 2467999999999999987765420 00 0000 01111122111 22
Q ss_pred C-CCCCccEEEEccccccCchhHH--HHHHHHHHHccCCC-EEEEEec
Q 002226 789 S-RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 832 (951)
Q Consensus 789 ~-~d~sFDlVVcieVLEHL~dD~l--~~L~eeL~RvLKPG-vLIISTP 832 (951)
. ..+.||+|+|.+.++|+..... .......++..++| .+++.-+
T Consensus 269 i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 269 IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 2 2456999999999999984332 23334456777888 4444333
No 383
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=32.60 E-value=1.4e+02 Score=33.51 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=50.2
Q ss_pred CCCEEEEEcCccchhH--HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 712 CATTLVDFGCGSGSLL--DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 712 k~krVLDIGCGeG~ll--~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
+.-++||||-|.--.- .-..+++ .+.+|.||++..++.|+..+.+.. .....|++....-.+--+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg---wrfvGseid~~sl~sA~~ii~~N~----------~l~~~I~lr~qk~~~~if 144 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG---WRFVGSEIDSQSLSSAKAIISANP----------GLERAIRLRRQKDSDAIF 144 (292)
T ss_pred CceEEEeeccCcccccccccceeec---ceeecCccCHHHHHHHHHHHHcCc----------chhhheeEEeccCccccc
Confidence 3457899998753321 1122344 689999999999999987765321 111245554433222212
Q ss_pred -----CCCCccEEEEccccccCc
Q 002226 790 -----RLHGFDIGTCLEVIEHME 807 (951)
Q Consensus 790 -----~d~sFDlVVcieVLEHL~ 807 (951)
..+.||+++|+--+|--.
T Consensus 145 ~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 145 NGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred cccccccceeeeEecCCCcchhH
Confidence 246799999987665433
No 384
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=31.38 E-value=3.8e+02 Score=33.95 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=82.2
Q ss_pred CEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccC--CC---CCCCccEEEEEccccc
Q 002226 714 TTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSITV 786 (951)
Q Consensus 714 krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l--~P---r~~~~nVtf~qGDa~d 786 (951)
++|.=||.|+-. .+..++..+ ..|+-+|++++.++.+.+++...+....... .+ .....++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 689999999733 444566666 8999999999999988776654332210000 00 0011234332 12211
Q ss_pred cCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecC-CchhHHHHhhccCccCCCCchhhhhccccccC
Q 002226 787 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN-YEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN 865 (951)
Q Consensus 787 Lp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPN-sEfN~lf~~L~~~~~~eYPde~~~~~~~~fRh 865 (951)
....|+|+=. +.|.+. ....+..++-++++|+.++.++-. ..-..+.... ..|.. .-...|-+
T Consensus 390 ----~~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r---~~g~Hff~ 453 (715)
T PRK11730 390 ----FERVDVVVEA-VVENPK--VKAAVLAEVEQKVREDTILASNTSTISISLLAKAL------KRPEN---FCGMHFFN 453 (715)
T ss_pred ----hcCCCEEEec-ccCcHH--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCCcc---EEEEecCC
Confidence 2456665422 333333 223444568889999855444322 2222333322 11110 01112223
Q ss_pred CCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 866 HDHK--------FEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 866 ~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
|-|. ..-|..+...++..++.+.|......
T Consensus 454 P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 454 PVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred cccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe
Confidence 3221 22355556666777888888766554
No 385
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=31.15 E-value=53 Score=33.14 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=47.1
Q ss_pred cCCCCEEEEEcCccch-hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 710 ESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~-ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.....+|++||-|.=. .+..|.+++ ..|+++|+.+. .|. ..+.++.-|+.+..
T Consensus 11 ~~~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~--------------------~g~~~v~DDif~P~ 64 (127)
T PF03686_consen 11 LNNYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP--------------------EGVNFVVDDIFNPN 64 (127)
T ss_dssp HS-SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S---------------------------STTEE---SSS--
T ss_pred hCCCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc--------------------cCcceeeecccCCC
Confidence 3455699999998644 456677776 89999999887 221 24667777887754
Q ss_pred CC-CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002226 789 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 835 (951)
Q Consensus 789 ~~-d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTPNsE 835 (951)
.. -.+.|+|.++--=.-|. ..+.+ +++.+.- -++|.+-..|
T Consensus 65 l~iY~~a~lIYSiRPP~El~----~~il~-lA~~v~a-dlii~pL~~e 106 (127)
T PF03686_consen 65 LEIYEGADLIYSIRPPPELQ----PPILE-LAKKVGA-DLIIRPLGGE 106 (127)
T ss_dssp HHHHTTEEEEEEES--TTSH----HHHHH-HHHHHT--EEEEE-BTTB
T ss_pred HHHhcCCcEEEEeCCChHHh----HHHHH-HHHHhCC-CEEEECCCCC
Confidence 33 35789998875422222 23332 4443322 5555555544
No 386
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=30.25 E-value=2.2e+02 Score=31.37 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=31.7
Q ss_pred CEEEEEcCcc-c-hhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 714 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 714 krVLDIGCGe-G-~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
++|.=||+|. | .++..+++.+ .+|+.+|.+++.++.+.+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG---YDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 5788899994 3 3455666666 689999999999988766543
No 387
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=29.20 E-value=1.9e+02 Score=33.71 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=70.5
Q ss_pred CCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCC
Q 002226 712 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 790 (951)
Q Consensus 712 k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~ 790 (951)
.+.+|.=||-| -|..+..++--.+ +.|+-+|+|.+-|+.-...+ ..+++.+..+..++...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f----------------~~rv~~~~st~~~iee~ 228 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLF----------------GGRVHTLYSTPSNIEEA 228 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhh----------------CceeEEEEcCHHHHHHH
Confidence 45678889988 4667666665443 89999999988777664432 12677777777777666
Q ss_pred CCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEec
Q 002226 791 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 832 (951)
Q Consensus 791 d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIISTP 832 (951)
....|+++..-.|---..+. ...+++...+|||.+||.+-
T Consensus 229 v~~aDlvIgaVLIpgakaPk--Lvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 229 VKKADLVIGAVLIPGAKAPK--LVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred hhhccEEEEEEEecCCCCce--ehhHHHHHhcCCCcEEEEEE
Confidence 77899998876655444333 44467899999996655544
No 388
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=29.04 E-value=1.1e+02 Score=35.90 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHhhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002226 705 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 754 (951)
Q Consensus 705 ldlL~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~Ar 754 (951)
.+.|+..++.+||-|..|-...+.+|.+.. .+|++||+++..+...+
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P---~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAGP---KRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcCC---ceEEEEeCCHHHHHHHH
Confidence 355667788999999988888888887766 89999999998765543
No 389
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=1.5e+02 Score=32.69 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=77.0
Q ss_pred cCCCCceeeeccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceE-EEeccCccchhhhhhhhhccccccce
Q 002226 560 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFE-FEMGTGAVIPQVEVVTAQMSVGQSAC 638 (951)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~-fe~g~~a~~~~l~~v~~q~sv~q~~~ 638 (951)
..+.+++...+|.=-+ |=-|..|..|.|-|.-.|--.|+--.-.+. ...|. |..|.|-|+.-++..|+-|.||.-++
T Consensus 116 ~tl~~Gl~y~D~~vG~-G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGS-GPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecC-CCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 4677888888775333 999999999999999999865554333333 23455 99999999999999999999999988
Q ss_pred ecccCCchhhhhhhccCcccchhcccccccccceeeeeccc
Q 002226 639 FCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRV 679 (951)
Q Consensus 639 ~~~~l~~~~l~lAa~~~~~~DiSlL~~d~~~LEyyI~LL~v 679 (951)
.+ .||.=-+ ..+..+ .+|-.+ ||+|-|.|+.+
T Consensus 194 vi--IPp~lgY---g~~g~~---~Ippns-tL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VI--IPPELGY---GKKGVP---EIPPNS-TLVFDVELLSV 225 (226)
T ss_pred EE--eCccccc---cccCcC---cCCCCC-cEEEEEEEEec
Confidence 87 5553111 111111 233333 38888887764
No 390
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=28.56 E-value=1.8e+02 Score=34.58 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCcc-chhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 711 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 711 ~k~krVLDIGCGe-G~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
..+++|+=+|||. |.....+++..+ .+|+.+|+++.-+..|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 4788999999996 555554555433 689999999887777753
No 391
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=27.90 E-value=7.3e+02 Score=31.68 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=85.5
Q ss_pred CCEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC--CC---CCCccEEEEEcccc
Q 002226 713 ATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--PC---TDVKSAVLFDGSIT 785 (951)
Q Consensus 713 ~krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~--Pr---~~~~nVtf~qGDa~ 785 (951)
.++|-=||+|+-. .+..++..+ ..|+-+|++++.++.+.+++...+........ +. ....++++. .|..
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 410 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS 410 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 3689999999633 344556666 89999999999999988776644332100000 00 001233332 1221
Q ss_pred ccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCchhhhhcccccc
Q 002226 786 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 864 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS-TPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fR 864 (951)
.....|+|+=. |.|.+. ....+..++-.+++|+.++.+ |-...-..+.... ..|.. .-...|-
T Consensus 411 ----~~~~aDlViEA-v~E~l~--~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r---~ig~Hff 474 (737)
T TIGR02441 411 ----GFKNADMVIEA-VFEDLS--LKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVS------SRPEK---VIGMHYF 474 (737)
T ss_pred ----HhccCCeehhh-ccccHH--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCccc---eEEEecc
Confidence 12455665422 334333 223444568899999955444 3333333333322 11110 0112233
Q ss_pred CCCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 865 NHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 865 h~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
++-|. ...|-.+....+..++.+.|......
T Consensus 475 ~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 513 (737)
T TIGR02441 475 SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVV 513 (737)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 33332 23566677777778888888776554
No 392
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=27.21 E-value=40 Score=31.89 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHhcCCCCCCeEEEE
Q 002226 256 DVIARNLDQTDGNKILVS 273 (951)
Q Consensus 256 ~~ia~~l~~~d~~~v~~s 273 (951)
.-++++||++||-+|++-
T Consensus 66 rqlgeKLGl~dGeQvfLr 83 (87)
T PF09263_consen 66 RQLGEKLGLSDGEQVFLR 83 (87)
T ss_dssp HHHHHHTT--TT-EEEEE
T ss_pred HHHHHhhCCCcCCeEeee
Confidence 358999999999999973
No 393
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=27.15 E-value=2.4e+02 Score=27.36 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002226 711 SCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 756 (951)
Q Consensus 711 ~k~krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~Arkr 756 (951)
...++|+-+|||. ...+..+++.+ ..+|+.+|.+++..+...+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHH
Confidence 4568999999973 22334444543 26899999998776655443
No 394
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.62 E-value=3.1e+02 Score=33.28 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=54.5
Q ss_pred CEEEEEcCcc-chh-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC---
Q 002226 714 TTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 788 (951)
Q Consensus 714 krVLDIGCGe-G~l-l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 788 (951)
.+++=+|||. |+. ++.|.+++ .+++.+|.+++.++.+++. ....+.||+.+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~~-------------------g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRER-------------------GIRAVLGNAANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHC-------------------CCeEEEcCCCCHHHHH
Confidence 5677788774 333 34444555 6899999999988888541 4678889998743
Q ss_pred -CCCCCccEEEEccccccCchhHH-HHHHHHHHHccCCC-EEEEEecC
Q 002226 789 -SRLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 789 -~~d~sFDlVVcieVLEHL~dD~l-~~L~eeL~RvLKPG-vLIISTPN 833 (951)
......|.++..-. ++.. ..+.. ..+...|. .++.-+.+
T Consensus 476 ~a~i~~a~~viv~~~-----~~~~~~~iv~-~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 476 LAHLDCARWLLLTIP-----NGYEAGEIVA-SAREKRPDIEIIARAHY 517 (558)
T ss_pred hcCccccCEEEEEcC-----ChHHHHHHHH-HHHHHCCCCeEEEEECC
Confidence 23456786654311 1222 22322 34556777 55544433
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=26.58 E-value=4.7e+02 Score=30.29 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=54.0
Q ss_pred EEEEEcCccchhHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC-
Q 002226 715 TLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 789 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LA----k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~- 789 (951)
+|+=+||| ..+..++ +.+ .+|+.+|.+++.++.+++. ..+.++.||..+...
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~------------------~~~~~~~gd~~~~~~l 58 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR------------------LDVRTVVGNGSSPDVL 58 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh------------------cCEEEEEeCCCCHHHH
Confidence 57777874 5554444 344 6899999999887766431 146778888865321
Q ss_pred ---CCCCccEEEEccccccCchhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002226 790 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 834 (951)
Q Consensus 790 ---~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPG-vLIISTPNs 834 (951)
....+|.|++.-- ++....+...+.+.+.|. .+++-+-+.
T Consensus 59 ~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~~~~~~ 102 (453)
T PRK09496 59 REAGAEDADLLIAVTD-----SDETNMVACQIAKSLFGAPTTIARVRNP 102 (453)
T ss_pred HHcCCCcCCEEEEecC-----ChHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 2456887776432 133333333355566565 555554443
No 396
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.50 E-value=2.5e+02 Score=28.97 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=46.9
Q ss_pred CCCEEEEEcCccc--hhH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 712 CATTLVDFGCGSG--SLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG--~ll-~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
+++++|-.|++.| ..+ ..+++.+ .+|+.+|.++..++.+.+.+.. ...++.+++.|+.+..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEKLEEAVAECGA-------------LGTEVRGYAANVTDEE 67 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 5678999997433 322 3455565 6899999998777665554321 1236777888876532
Q ss_pred C----------CCCCccEEEEccc
Q 002226 789 S----------RLHGFDIGTCLEV 802 (951)
Q Consensus 789 ~----------~d~sFDlVVcieV 802 (951)
. ....+|+|+....
T Consensus 68 ~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 68 DVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1146899987643
No 397
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=26.45 E-value=6.1e+02 Score=30.56 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=38.9
Q ss_pred HHHHHHhhcC--CCCEEEEEcCccchhHHHHhc---CCCCCceEEEEeCChHHHHHHHHHH
Q 002226 702 EYALQHIKES--CATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKII 757 (951)
Q Consensus 702 e~VldlL~~~--k~krVLDIGCGeG~ll~~LAk---~g~~~~qVVGVDISeemLe~ArkrL 757 (951)
+.+.+++... ++..|.|.-||+|.++....+ .+.....++|-+....+...|+..+
T Consensus 205 ~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 205 ELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred HHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 3444555432 457899999999999865432 1212356999999999998887653
No 398
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=26.44 E-value=41 Score=38.21 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=66.7
Q ss_pred hhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCccchhH--HHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhh
Q 002226 684 EDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLL--DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 761 (951)
Q Consensus 684 EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGeG~ll--~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~l 761 (951)
.+.|.+.+-.|...-.|..++.+. .+..++.|+-+|=- -..+ .+|.... .+|.-|||++..+..-.+-..
T Consensus 125 ~~~yDQgfvTpEttv~Rv~lm~~R-GDL~gK~I~vvGDD-DLtsia~aLt~mp---k~iaVvDIDERli~fi~k~ae--- 196 (354)
T COG1568 125 LHQYDQGFVTPETTVSRVALMYSR-GDLEGKEIFVVGDD-DLTSIALALTGMP---KRIAVVDIDERLIKFIEKVAE--- 196 (354)
T ss_pred chhcccccccccceeeeeeeeccc-cCcCCCeEEEEcCc-hhhHHHHHhcCCC---ceEEEEechHHHHHHHHHHHH---
Confidence 356777777787777788777665 34578899999922 2222 2333443 799999999999988765433
Q ss_pred hcccccCCCCCCCccEEEEEccccccCCC--CCCccEEEE
Q 002226 762 SKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTC 799 (951)
Q Consensus 762 s~~~~~l~Pr~~~~nVtf~qGDa~dLp~~--d~sFDlVVc 799 (951)
..+..+++.+.-|+.+.-+. ...||+.+.
T Consensus 197 ---------e~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 197 ---------ELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred ---------HhCccchhheeehhcccChHHHHhhCCeeec
Confidence 13555788888888764322 467998764
No 399
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=26.28 E-value=1.4e+02 Score=33.76 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=49.6
Q ss_pred CCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC-
Q 002226 713 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL- 791 (951)
Q Consensus 713 ~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d- 791 (951)
..+++|+=||-|.+...+...+ ..-+.++|+++..++.-+.+.. ...+..+|+.+.....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~-----------------~~~~~~~di~~~~~~~~ 63 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFP-----------------HGDIILGDIKELDGEAL 63 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCC-----------------CCceeechHhhcChhhc
Confidence 4589999999999998888776 4668899999999888765431 1445556666544321
Q ss_pred -C-CccEEEEc
Q 002226 792 -H-GFDIGTCL 800 (951)
Q Consensus 792 -~-sFDlVVci 800 (951)
. .+|+++..
T Consensus 64 ~~~~~DvligG 74 (328)
T COG0270 64 RKSDVDVLIGG 74 (328)
T ss_pred cccCCCEEEeC
Confidence 1 78888863
No 400
>PTZ00357 methyltransferase; Provisional
Probab=26.24 E-value=2.2e+02 Score=36.33 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=48.5
Q ss_pred EEEEEcCccchhHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCC------CccEEEEEcccc
Q 002226 715 TLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD------VKSAVLFDGSIT 785 (951)
Q Consensus 715 rVLDIGCGeG~ll~~LAk~---g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~------~~nVtf~qGDa~ 785 (951)
.|+-+|+|-|-+.....+. .+-..+|++|+-++..+.....+.... +... ...|+++..|+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~---------eeW~n~~~~~G~~VtII~sDMR 773 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND---------PEWTQLAYTFGHTLEVIVADGR 773 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc---------cccccccccCCCeEEEEeCccc
Confidence 5899999999998654432 112368999999966443443332110 0111 236999999999
Q ss_pred ccCCCC-----------CCccEEEE
Q 002226 786 VFDSRL-----------HGFDIGTC 799 (951)
Q Consensus 786 dLp~~d-----------~sFDlVVc 799 (951)
++..+. +.+|+||+
T Consensus 774 ~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 774 TIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccccccccccceehH
Confidence 875331 36899986
No 401
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.15 E-value=2.2e+02 Score=32.02 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=49.8
Q ss_pred CCCEEEEEcCcc-chhHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCC
Q 002226 712 CATTLVDFGCGS-GSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 789 (951)
Q Consensus 712 k~krVLDIGCGe-G~ll~-~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~ 789 (951)
.+++|+=+|.|. |..+. .+.+.+ .+|+.+|.+++..+.++.. + .++. +..++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~~~----------------G---~~~~--~~~~l~~ 206 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG---ANVTVGARKSAHLARITEM----------------G---LSPF--HLSELAE 206 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHc----------------C---Ceee--cHHHHHH
Confidence 578999999985 33333 333444 6999999998765555321 1 1111 1122222
Q ss_pred CCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEE
Q 002226 790 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 829 (951)
Q Consensus 790 ~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLII 829 (951)
....+|+|+..- + . ..+.+.+...++|+.+|+
T Consensus 207 ~l~~aDiVI~t~-----p-~--~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 207 EVGKIDIIFNTI-----P-A--LVLTKEVLSKMPPEALII 238 (296)
T ss_pred HhCCCCEEEECC-----C-h--hhhhHHHHHcCCCCcEEE
Confidence 335799998752 2 1 123345778899994444
No 402
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=26.06 E-value=1.7e+02 Score=33.76 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=40.7
Q ss_pred hhcCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHh
Q 002226 708 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 759 (951)
Q Consensus 708 L~~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa 759 (951)
+....+.+|+-+|.|-...+.+|++.. .+|..||+++..|...+-++.+
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~P---a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAP---ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCC---ceeEEEeCCHHHHHHHHHHHHH
Confidence 344567899999999999999998887 7999999999998877665553
No 403
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=24.38 E-value=6e+02 Score=32.30 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCCEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCC--CC---CCCccEEEEEccc
Q 002226 712 CATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--PC---TDVKSAVLFDGSI 784 (951)
Q Consensus 712 k~krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~--Pr---~~~~nVtf~qGDa 784 (951)
+.++|.=||.|+-. .+..++..+ ..|+-+|++++.++.+.+++...+........ +. ....+++... |.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~ 387 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKG---TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY 387 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH
Confidence 34689999999643 344556666 89999999999999888766544322111000 00 0012333321 21
Q ss_pred cccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEe-cCCchhHHHHhhccCccCCCCchhhhhccccc
Q 002226 785 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST-PNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 863 (951)
Q Consensus 785 ~dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIST-PNsEfN~lf~~L~~~~~~eYPde~~~~~~~~f 863 (951)
. .....|+|+=. +.|.++ - ...+..++-++++|+.++.++ -...-..+...+ ..|..- -...|
T Consensus 388 ~----~~~~aDlViEa-v~E~l~-~-K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~------~~p~r~---ig~Hf 451 (714)
T TIGR02437 388 A----GFDNVDIVVEA-VVENPK-V-KAAVLAEVEQHVREDAILASNTSTISISLLAKAL------KRPENF---CGMHF 451 (714)
T ss_pred H----HhcCCCEEEEc-CcccHH-H-HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc------CCcccE---EEEec
Confidence 1 13456766532 344444 2 234445688999999554443 222223333322 111110 11222
Q ss_pred cCCCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 864 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 864 Rh~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
-+|-|. ..-|..+....+..++.+.|......
T Consensus 452 f~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 491 (714)
T TIGR02437 452 FNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVV 491 (714)
T ss_pred CCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 233332 22455566666677777777766543
No 404
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=24.30 E-value=3.8e+02 Score=29.24 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=24.3
Q ss_pred EEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHH
Q 002226 715 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRA 753 (951)
Q Consensus 715 rVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~A 753 (951)
+|+=+|+|... ++..|++.+ .+|+.++. ++.++..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g---~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG---RDVTFLVR-PKRAKAL 38 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC---CceEEEec-HHHHHHH
Confidence 68889999633 445666666 68999997 6555544
No 405
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=24.18 E-value=1.8e+02 Score=32.65 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=53.6
Q ss_pred CEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCC
Q 002226 714 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 791 (951)
Q Consensus 714 krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d 791 (951)
.+|+=+|.|- |.+++.|.+.+ ....++|.|.+...++.+... .+.....+. ......
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~l-------------------gv~d~~~~~-~~~~~~ 62 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALEL-------------------GVIDELTVA-GLAEAA 62 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhc-------------------Ccccccccc-hhhhhc
Confidence 5788899883 55666776766 446689999999888888542 111110000 001123
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEEe
Q 002226 792 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 792 ~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIST 831 (951)
...|+|+..-=++. ...+.+++...|++|.++..+
T Consensus 63 ~~aD~VivavPi~~-----~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 63 AEADLVIVAVPIEA-----TEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred ccCCEEEEeccHHH-----HHHHHHHhcccCCCCCEEEec
Confidence 55788875433332 334455677788888555543
No 406
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.98 E-value=1.8e+02 Score=33.96 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred hhcccccccccceeeeecc--cCCChhhhhhhhcCCChhHHHHHHHHHHHhhcCCCCEEEEEcCcc-chhHHHHhcCCCC
Q 002226 660 FSLLSSRACCLEYHITLLR--VTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTA 736 (951)
Q Consensus 660 iSlL~~d~~~LEyyI~LL~--v~ep~EeRye~~~F~PPL~~QR~e~VldlL~~~k~krVLDIGCGe-G~ll~~LAk~g~~ 736 (951)
.++.+-+-.+.+||++-=. ..-|..--++...+-.||.-.-+.- .+-.-..+.+||=+|+|. |-++...++.. .
T Consensus 117 ~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~~HAc--r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-G 193 (354)
T KOG0024|consen 117 CATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVGVHAC--RRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-G 193 (354)
T ss_pred ccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhhhhhh--hhcCcccCCeEEEECCcHHHHHHHHHHHHc-C
Confidence 3334445555677755210 0012222233344444555432221 122335788999999995 55555445543 2
Q ss_pred CceEEEEeCChHHHHHHHH
Q 002226 737 LEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 737 ~~qVVGVDISeemLe~Ark 755 (951)
..+|+.+|+++.-|+.|++
T Consensus 194 A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 194 ASDVVITDLVANRLELAKK 212 (354)
T ss_pred CCcEEEeecCHHHHHHHHH
Confidence 3799999999999999987
No 407
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=23.64 E-value=5.4e+02 Score=32.56 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=84.1
Q ss_pred CEEEEEcCccchhH--HHHh-cCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccC--CCC---CCCccEEEEEcccc
Q 002226 714 TTLVDFGCGSGSLL--DSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPC---TDVKSAVLFDGSIT 785 (951)
Q Consensus 714 krVLDIGCGeG~ll--~~LA-k~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l--~Pr---~~~~nVtf~qGDa~ 785 (951)
++|.=||+|.-.-. ..++ ..+ .+|+-+|++++.++.+.+++...+....... .+. ....++++. .|..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 380 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG---IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYR 380 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChH
Confidence 57999999964433 2344 355 7999999999999988776654332210000 000 001234433 2221
Q ss_pred ccCCCCCCccEEEEccccccCchhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCchhhhhcccccc
Q 002226 786 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 864 (951)
Q Consensus 786 dLp~~d~sFDlVVcieVLEHL~dD~l~~L~eeL~RvLKPGvLIIS-TPNsEfN~lf~~L~~~~~~eYPde~~~~~~~~fR 864 (951)
.....|+|+=. +.|.+. ....+..++-.+++|+.++.+ |-...-..+...+ ..|.. .-...|-
T Consensus 381 ----~~~~adlViEa-v~E~l~--~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~------~~p~r---~~g~Hff 444 (699)
T TIGR02440 381 ----GFKDVDIVIEA-VFEDLA--LKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAA------SRPEN---VIGLHYF 444 (699)
T ss_pred ----HhccCCEEEEe-ccccHH--HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhc------CCccc---EEEEecC
Confidence 23456666432 334433 223444568889999844443 3332333333322 11110 0111222
Q ss_pred CCCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002226 865 NHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 895 (951)
Q Consensus 865 h~DHk--------FEWTreEFqaWae~LA~r~GYsVEf~ 895 (951)
+|-|. ...|..+...++..++.+.|......
T Consensus 445 nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v 483 (699)
T TIGR02440 445 SPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVV 483 (699)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 33332 23677777778888888888776554
No 408
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=23.45 E-value=1.4e+02 Score=32.69 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=42.9
Q ss_pred HHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccCCCCCCccEEEEccccccC
Q 002226 727 LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 806 (951)
Q Consensus 727 l~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp~~d~sFDlVVcieVLEHL 806 (951)
++.|.+.+ +..+|+|+|.++..++.|.+. +. +.-...+.. ....+|+|+..-=+
T Consensus 2 A~aL~~~g-~~~~v~g~d~~~~~~~~a~~~----------------g~--~~~~~~~~~----~~~~~DlvvlavP~--- 55 (258)
T PF02153_consen 2 ALALRKAG-PDVEVYGYDRDPETLEAALEL----------------GI--IDEASTDIE----AVEDADLVVLAVPV--- 55 (258)
T ss_dssp HHHHHHTT-TTSEEEEE-SSHHHHHHHHHT----------------TS--SSEEESHHH----HGGCCSEEEE-S-H---
T ss_pred hHHHHhCC-CCeEEEEEeCCHHHHHHHHHC----------------CC--eeeccCCHh----HhcCCCEEEEcCCH---
Confidence 45666666 458999999999999888642 11 000111111 12456888754332
Q ss_pred chhHHHHHHHHHHHccCCCEEEEEe
Q 002226 807 EEDEASQFGNIVLSSFRPRILIVST 831 (951)
Q Consensus 807 ~dD~l~~L~eeL~RvLKPGvLIIST 831 (951)
+....+.+++...+++|.+++.+
T Consensus 56 --~~~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 56 --SAIEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp --HHHHHHHHHHHCGS-TTSEEEE-
T ss_pred --HHHHHHHHHhhhhcCCCcEEEEe
Confidence 44445566788888888555543
No 409
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=23.26 E-value=4.5e+02 Score=29.26 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=33.4
Q ss_pred hhcCCCCEEEEEcCc-cchhHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002226 708 IKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 755 (951)
Q Consensus 708 L~~~k~krVLDIGCG-eG~ll~~LAk~g~~~~qVVGVDISeemLe~Ark 755 (951)
....++.+||=.|+| .|.++..+++..+ .+|+++|.+++-++.+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 344567899999976 4545566666543 679999999988887765
No 410
>PRK08703 short chain dehydrogenase; Provisional
Probab=23.17 E-value=3.5e+02 Score=28.00 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002226 711 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKII 757 (951)
Q Consensus 711 ~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrL 757 (951)
.++++||-.|++.|. ++..|++.+ .+|++++-+++.++...+.+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHHHHHHHHHH
Confidence 356799999975433 234555666 68999999887666554443
No 411
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=22.87 E-value=1.1e+02 Score=34.02 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCC----CCceEEEEeCCh
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQ 747 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~----~~~qVVGVDISe 747 (951)
+...++|+|||.|.++.+++.... +...++-||-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 556899999999999999886541 236789999644
No 412
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=22.56 E-value=2.2e+02 Score=31.63 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=28.3
Q ss_pred CEEEEEcCcc-c-hhHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002226 714 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAA 754 (951)
Q Consensus 714 krVLDIGCGe-G-~ll~~LAk~g~~~~qVVGVDISeemLe~Ar 754 (951)
.+|.=||+|. | .++..|.+.+ ...+|+++|.+++.++.++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGADRSAETRARAR 48 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEECCHHHHHHHH
Confidence 5789999986 3 3445565554 2248999999998777664
No 413
>PRK05854 short chain dehydrogenase; Provisional
Probab=22.51 E-value=4.1e+02 Score=29.42 Aligned_cols=78 Identities=12% Similarity=-0.027 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcccccc
Q 002226 711 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 787 (951)
Q Consensus 711 ~k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dL 787 (951)
..++++|=.|++.|. .+..|++.+ .+|+.++-+.+-.+.+.+.+... ....++.++..|+.+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~-----------~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAKGEAAVAAIRTA-----------VPDAKLSLRALDLSSL 77 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEEecCCCH
Confidence 356889999977654 345666776 78999998887776665554321 1123688888898764
Q ss_pred CC----------CCCCccEEEEccc
Q 002226 788 DS----------RLHGFDIGTCLEV 802 (951)
Q Consensus 788 p~----------~d~sFDlVVcieV 802 (951)
.. .....|+++.+-.
T Consensus 78 ~sv~~~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 78 ASVAALGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHHHHHHhCCCccEEEECCc
Confidence 31 2356898887643
No 414
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.25 E-value=1.3e+02 Score=33.61 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=59.2
Q ss_pred CCCEEEEEcCccchhHHHHhcCCC-----CC---ceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEcc
Q 002226 712 CATTLVDFGCGSGSLLDSLLDYPT-----AL---EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 783 (951)
Q Consensus 712 k~krVLDIGCGeG~ll~~LAk~g~-----~~---~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGD 783 (951)
..++++|+....|.+...|.+.-- .. ..+++||+.+- .-.+.|.-+++|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------------------aPI~GV~qlq~D 97 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------------------APIEGVIQLQGD 97 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------------------CccCceEEeecc
Confidence 357999999999999987765320 11 23999996331 012367788889
Q ss_pred ccccC--------CCCCCccEEEEccc-----cccCchhHH-HHH---HHHHHHccCCCEEEE
Q 002226 784 ITVFD--------SRLHGFDIGTCLEV-----IEHMEEDEA-SQF---GNIVLSSFRPRILIV 829 (951)
Q Consensus 784 a~dLp--------~~d~sFDlVVcieV-----LEHL~dD~l-~~L---~eeL~RvLKPGvLII 829 (951)
+.... |....-|+|+|-+. ||-+++-.. +.+ ......+||||.-++
T Consensus 98 IT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 98 ITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred cCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 87643 33457899999543 555553221 111 223468999994444
No 415
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=21.37 E-value=1.4e+02 Score=27.94 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchhHH-HHhcCCCCCceEEEEeCC
Q 002226 699 QRVEYALQHIKESCATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDIS 746 (951)
Q Consensus 699 QR~e~VldlL~~~k~krVLDIGCGeG~ll~-~LAk~g~~~~qVVGVDIS 746 (951)
+..+++...-....+++||-+||.+|+=+. .++..++.....+||-..
T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 344555554444567999999999998542 222211123788888754
No 416
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=21.27 E-value=4.3e+02 Score=27.74 Aligned_cols=75 Identities=17% Similarity=0.025 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCccchhHH----HHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccc
Q 002226 711 SCATTLVDFGCGSGSLLD----SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 786 (951)
Q Consensus 711 ~k~krVLDIGCGeG~ll~----~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~d 786 (951)
..++++|=.|+ +|..+. .|++++ .+|+.++-+...++...+.+.. ...++.++++|+.+
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~-------------~~~~~~~~~~Dl~d 72 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAG---ARVVLSARKAEELEEAAAHLEA-------------LGIDALWIAADVAD 72 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEEccCCC
Confidence 35688999995 444443 445556 6899999888776665544321 12357788999886
Q ss_pred cCC----------CCCCccEEEEccc
Q 002226 787 FDS----------RLHGFDIGTCLEV 802 (951)
Q Consensus 787 Lp~----------~d~sFDlVVcieV 802 (951)
... ....+|.|+....
T Consensus 73 ~~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 73 EADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 432 1246899887654
No 417
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=21.27 E-value=5.3e+02 Score=26.74 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=55.8
Q ss_pred EcCccchhHHHHhcCCCCCceEEE--EeCChHHHHHHH---HHHHhhhhcccccCCCCCCCccEEEEE-ccccccCC---
Q 002226 719 FGCGSGSLLDSLLDYPTALEKIVG--VDISQKSLSRAA---KIIHSKLSKKLDAAVPCTDVKSAVLFD-GSITVFDS--- 789 (951)
Q Consensus 719 IGCGeG~ll~~LAk~g~~~~qVVG--VDISeemLe~Ar---krLsa~ls~~~~~l~Pr~~~~nVtf~q-GDa~dLp~--- 789 (951)
||=|.-.|+..|++.......+++ .|-.++.++... ..+... . ...+.+.. -|+..+..
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L-~-----------~~g~~V~~~VDat~l~~~~~ 70 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL-R-----------ELGVTVLHGVDATKLHKHFR 70 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH-h-----------hcCCccccCCCCCccccccc
Confidence 555666667777776532355655 454444444332 232211 1 12333333 37766654
Q ss_pred -CCCCccEEEEccccccCc-------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002226 790 -RLHGFDIGTCLEVIEHME-------------EDEASQFGNIVLSSFRPR-ILIVSTPN 833 (951)
Q Consensus 790 -~d~sFDlVVcieVLEHL~-------------dD~l~~L~eeL~RvLKPG-vLIISTPN 833 (951)
....||.|+-++= |.. ..-+..|.+.+..+|+++ .+.|+--+
T Consensus 71 ~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 71 LKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred ccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3478999987542 443 233456667788999997 66665444
No 418
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.01 E-value=4.6e+02 Score=27.37 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=49.1
Q ss_pred HHhhcCCCCEEEEEcCccchhHH----HHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEE
Q 002226 706 QHIKESCATTLVDFGCGSGSLLD----SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 781 (951)
Q Consensus 706 dlL~~~k~krVLDIGCGeG~ll~----~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~q 781 (951)
+++...+++++|-.|++ |.++. .|++++ .+|++++-+++.++...+... .. ++.++.
T Consensus 4 ~~~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~--------------~~-~~~~~~ 64 (264)
T PRK12829 4 DLLKPLDGLRVLVTGGA-SGIGRAIAEAFAEAG---ARVHVCDVSEAALAATAARLP--------------GA-KVTATV 64 (264)
T ss_pred hHhhccCCCEEEEeCCC-CcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHh--------------cC-ceEEEE
Confidence 34455677899999986 44443 445556 689999988876655433321 11 567888
Q ss_pred ccccccCC----------CCCCccEEEEcc
Q 002226 782 GSITVFDS----------RLHGFDIGTCLE 801 (951)
Q Consensus 782 GDa~dLp~----------~d~sFDlVVcie 801 (951)
+|+.+... ...++|+|+...
T Consensus 65 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 94 (264)
T PRK12829 65 ADVADPAQVERVFDTAVERFGGLDVLVNNA 94 (264)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 88876431 124689988754
No 419
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.76 E-value=3e+02 Score=30.30 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=31.7
Q ss_pred CCEEEEEcCccch--hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 713 ATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 713 ~krVLDIGCGeG~--ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
.++|.=||+|.-. ++..+++.+ .+|+.+|.+++.++.+.+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAG---YDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHH
Confidence 3578889998533 445666666 789999999999888765443
No 420
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=20.61 E-value=2e+02 Score=35.52 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCCCC---CC-----CCChHHHHHHHHHHHhhhhcccc
Q 002226 51 PQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPS---PN-----VPSAEEAWDKLIASVKHLFSNEF 122 (951)
Q Consensus 51 ~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~~~~---~~-----~~~~~e~~~~l~~~~~~~f~~e~ 122 (951)
||.+| -|.|...+-+- +.-+.=+.||.|.|.||..||+.|.-.-. +. .+++..--|++...+.--| +|.
T Consensus 113 ~~~~~-~F~~~~~vdg~-~~~~~~~sKk~ak~~aa~~al~~l~~~~~~~~~~~~~~~~e~~~~~~~~Ia~lv~~kF-~~L 189 (542)
T KOG2777|consen 113 PQHAP-KFVMSVVVDGR-WFEGGGRSKKEAKQEAAMAALQVLFKIDENPERPSEALTLENPSTLGDEIAELVLEKF-DEL 189 (542)
T ss_pred CCCCc-eEEEEEEECCE-EccCCCcchHHHHHHHHHHHHHHHHhccCCcccccccccccCCChHHHHHHHHHHHHH-HHH
Confidence 56564 78888777653 22333688999999999999999765322 21 1233333344444444445 555
Q ss_pred cccCCCc
Q 002226 123 LSSQSPL 129 (951)
Q Consensus 123 ~~~~~pl 129 (951)
.....|-
T Consensus 190 ~k~~kp~ 196 (542)
T KOG2777|consen 190 TKNGKPI 196 (542)
T ss_pred HhcCCCc
Confidence 5555553
No 421
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.57 E-value=1.1e+03 Score=25.75 Aligned_cols=42 Identities=26% Similarity=0.208 Sum_probs=31.0
Q ss_pred CEEEEEcCcc--chhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHH
Q 002226 714 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 758 (951)
Q Consensus 714 krVLDIGCGe--G~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLs 758 (951)
++|.=||+|. +.++..+++.+ .+|+.+|.+++.++.+.+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHH
Confidence 4688889984 23445566666 789999999999998876543
No 422
>PRK07890 short chain dehydrogenase; Provisional
Probab=20.47 E-value=3.7e+02 Score=28.02 Aligned_cols=75 Identities=20% Similarity=0.095 Sum_probs=48.2
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.+++||=.|++.|. ++..|++++ .+|+++|.++..++...+.+.. ...++.++..|+.+..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG---ADVVLAARTAERLDEVAAEIDD-------------LGRRALAVPTDITDED 67 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHH-------------hCCceEEEecCCCCHH
Confidence 45789988875443 234566676 6899999988766655444321 1135778888886532
Q ss_pred C----------CCCCccEEEEccc
Q 002226 789 S----------RLHGFDIGTCLEV 802 (951)
Q Consensus 789 ~----------~d~sFDlVVcieV 802 (951)
. ..+..|+|+....
T Consensus 68 ~~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 68 QCANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHHHHHHHHcCCccEEEECCc
Confidence 1 1246899887654
No 423
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.40 E-value=2.6e+02 Score=30.20 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred cCCCCEEEEEcCccchhHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHh
Q 002226 710 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 759 (951)
Q Consensus 710 ~~k~krVLDIGCGeG~ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa 759 (951)
...+..|||.=+|+|..+....+.+ ...+|+|++++.++.+.+++..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 4577899999999999998777776 6899999999999999998764
No 424
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.34 E-value=3.9e+02 Score=28.55 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCCEEEEEcCccch---hHHHHhcCCCCCceEEEEeCChHHHHHHHHHHHhhhhcccccCCCCCCCccEEEEEccccccC
Q 002226 712 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 788 (951)
Q Consensus 712 k~krVLDIGCGeG~---ll~~LAk~g~~~~qVVGVDISeemLe~ArkrLsa~ls~~~~~l~Pr~~~~nVtf~qGDa~dLp 788 (951)
.++++|-.|++.|. .+..|++.+ .+|+.+|.+.+.++...+.+.. ....++.++++|+.+..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG---ADVILLSRNEENLKKAREKIKS------------ESNVDVSYIVADLTKRE 71 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------hcCCceEEEEecCCCHH
Confidence 56789999987554 445677777 7899999998877666554431 11236788888887643
Q ss_pred C---------CCCCccEEEEcc
Q 002226 789 S---------RLHGFDIGTCLE 801 (951)
Q Consensus 789 ~---------~d~sFDlVVcie 801 (951)
. ..+..|+++..-
T Consensus 72 ~i~~~~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 72 DLERTVKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHHhhCCCcEEEECC
Confidence 1 124688887654
Done!