BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002227
(950 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 183 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242
MD +L L A + L LS N K+ +L NL+ L LG N ++ I V+ + +L
Sbjct: 41 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 100
Query: 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC------ 296
+ N + +L GIE L +L L +S N I+ + E++ LA+L L +L L GNPL
Sbjct: 101 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 160
Query: 297 -CSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326
+ YR +V P K+DG + E
Sbjct: 161 NATSEYRIEVVKRL--PNLKKLDGMPVDVDE 189
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 183 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242
MD +L L A + L LS N K+ +L NL+ L LG N ++ I V+ + +L
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99
Query: 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC------ 296
+ N + +L GIE L +L L +S N I+ + E++ LA+L L +L L GNPL
Sbjct: 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
Query: 297 -CSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326
+ YR +V P K+DG + E
Sbjct: 160 NATSEYRIEVVKRL--PNLKKLDGMPVDVDE 188
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 193 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL 251
V L L+ + +L + + + HLDL N LR++ A + + C V L +NAL +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV-LQASDNALENV 501
Query: 252 RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296
G+ NL L+ L + N + + ++ L S P L+ L L+GN LC
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 193 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL 251
V L L+ + +L + + + HLDL N LR++ A + + C V L +NAL +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV-LQASDNALENV 501
Query: 252 RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296
G+ NL L+ L + N + + ++ L S P L+ L L+GN LC
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 37/135 (27%)
Query: 189 LLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246
L AV++LDLS N+ + N L++CVNL+ LVL +N
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQ-----------------------ALVLTSN 86
Query: 247 ALTTLR--GIENLKSLEGLDISYNIISTFSELEF--LASLPYLLNLWLEGNPLCCSRWYR 302
+ T+ +L SLE LD+SYN +S S F L+SL +L L GNP +
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN---LLGNP-----YKT 138
Query: 303 AQVFSYFAHPAKLKV 317
S F+H KL++
Sbjct: 139 LGETSLFSHLTKLQI 153
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 33/133 (24%)
Query: 189 LLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246
L AV++LDLS N+ + N L++CVNL+ L L N + +I S
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-------------- 69
Query: 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEF--LASLPYLLNLWLEGNPLCCSRWYRAQ 304
+L SLE LD+SYN +S S F L+SL + LNL GNP +
Sbjct: 70 -------FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF-LNLL--GNP-----YKTLG 114
Query: 305 VFSYFAHPAKLKV 317
S F+H KL++
Sbjct: 115 ETSLFSHLTKLQI 127
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 192 AVETLDLSRNK-FAKVDNL-RKCVNLKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNA 247
V+T DLS++K FA + ++ +L+ L L N + I AF ++ H++KL L N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNF 334
Query: 248 LTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295
L ++ R ENL LE LD+SYN I + FL LP L L L+ N L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQL 383
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +++TLDL+ + V L NL+ L L N + +I+ + ++ ++ L + NN +
Sbjct: 112 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNNQVN 170
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295
L + NL L L N IS S LASLP L+ + L+ N +
Sbjct: 171 DLTPLANLSKLTTLRADDNKISDISP---LASLPNLIEVHLKDNQI 213
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 238 IVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295
I L N +TT+ GI+ L +L GL++ N I+ + L+ +L + L L GNPL
Sbjct: 49 IATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLK---NLTKITELELSGNPL 103
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +++TLDL+ + V L NL+ L L N + +I+ + ++ ++ L + N ++
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVS 164
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295
L + NL L L N IS S LASLP L+ + L+ N +
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQI 207
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 238 IVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295
I L +TT+ G++ L +L GL++ N I ++L L +L + L L GNPL
Sbjct: 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI---TDLAPLKNLTKITELELSGNPL 97
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 23 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 82
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 83 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 107
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 108 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 167
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 168 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 211
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L C+L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 142 ICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSR 200
I + S N + ++ S I+ + ++L + S NR+ +D S+ + +E LDLS
Sbjct: 25 ILNISQNYISELWTSDILSL------SKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78
Query: 201 NKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE 233
NK K+ + VNLKHLDL FN ++ E
Sbjct: 79 NKLVKI-SCHPTVNLKHLDLSFNAFDALPICKE 110
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 72 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 130
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 131 NLTNLNRLELSSNTISDISALSGLTSLQQL 160
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 175 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 233
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ + +L +L LD++ N IS + L L L L
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 269
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 73 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 131
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLTSLQQL 161
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 234
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ + +L +L LD++ N IS + L L L L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 215 LKHLDLGFNNLRSIAAFSEVSC-HIVKLVLRNNALTTLRG--IENLKSLEGLDISYNIIS 271
+K LDL FN + I +C ++ L+L+++ + T+ G +L SLE LD+S N +S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 272 TFSELEF--LASLPYLLNLWLEGNP 294
+ S F L+SL Y L L GNP
Sbjct: 88 SLSSSWFGPLSSLKY---LNLMGNP 109
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 229
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ + +L +L LD++ N IS + L L L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 215 LKHLDLGFNNLRSIAAFSEVSC-HIVKLVLRNNALTTLRG--IENLKSLEGLDISYNIIS 271
+K LDL FN + I +C ++ L+L+++ + T+ G +L SLE LD+S N +S
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 272 TFSELEF--LASLPYLLNLWLEGNP 294
+ S F L+SL YL L GNP
Sbjct: 114 SLSSSWFGPLSSLKYLN---LMGNP 135
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI 228
+LSF S L + L L +E LD+S NK + + L K NL+ L N + I
Sbjct: 155 QLSFSSNQVTDL----KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 210
Query: 229 AAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ ++ +L L N L + + +L +L LD++ N IS + L L L L
Sbjct: 211 TPLG-ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 229
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ + +L +L LD++ N IS + L L L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI 228
+LSF S L + L L +E LD+S NK + + L K NL+ L N + I
Sbjct: 155 QLSFSSNQVTDL----KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 210
Query: 229 AAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ ++ +L L N L + + +L +L LD++ N IS + L L L L
Sbjct: 211 TPLG-ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 196 LDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255
++ S N+ + L+ L + + N + I + ++ ++ L L NN +T + ++
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLK 126
Query: 256 NLKSLEGLDISYNIISTFSELEFLASLPYL 285
NL +L L++S N IS S L L SL L
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQL 156
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 190 LPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249
L +E LD+S NK + + L K NL+ L N + I + ++ +L L N L
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLK 230
Query: 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
+ + +L +L LD++ N IS + L L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 187 LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246
+Q ++ L LS N+ + + L+ L+ L + N L+++ S + +L L NN
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--SACLSRLFLDNN 116
Query: 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285
L + +LK+LE L I N + + L FL+ L L
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 91/228 (39%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L +L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 91/228 (39%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L +L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 91/228 (39%), Gaps = 60/228 (26%)
Query: 92 VSALPPP-ARDPTPL-------------SLLPFCRLKVLELRGCDLSTSAAKGLLELRHT 137
++ALPP +D T L +L+P+ RL L L +L+ G L + T
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLD 197
L+ + HN +L P Q LPA+ LD
Sbjct: 82 LD--LSHNQLQSL--------------PLLG-------------------QTLPALTVLD 106
Query: 198 LSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTLRG- 253
+S N+ + LR L+ L L N L+++ + + KL L NN LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 254 -IENLKSLEGLDISYNIISTFSELEFLAS--LPYLLNLWLEGNPLCCS 298
+ L++L+ L + N + T + F S LP+ +L GNP C+
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPF---AFLHGNPWLCN 210
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 137 TLEKIICHNS-----------TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185
TL + CHNS T + + S + D Q L++++C N+L +D
Sbjct: 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD- 101
Query: 186 SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI-----AAFSEVSCHIVK 240
+ L + L+ NK K+D + + L +L+ N L I +E+ CH+ K
Sbjct: 102 -VTPLTKLTYLNCDTNKLTKLDVSQNPL-LTYLNCARNTLTEIDVSHNTQLTELDCHLNK 159
Query: 241 LVLRNNALTTLRGIENLKSLEGLDISYNIIS 271
+ + + L LD S+N I+
Sbjct: 160 KITK-------LDVTPQTQLTTLDCSFNKIT 183
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 216 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRG----IENLKSLEGLDISY 267
+++D+ N S+AA E ++ L L NN L L ++ +L+ L++S
Sbjct: 146 QNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205
Query: 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-----HPAKLKVDGKEI 322
N + + EL+ + L L LWL+GN LC + +R Q +Y + P L++DG E+
Sbjct: 206 NELKSERELDKIKGL-KLEELWLDGNSLCDT--FRDQS-TYISAIRERFPKLLRLDGHEL 261
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 34/145 (23%)
Query: 111 CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRL 170
C L + E R L G+++L + L + S+ +L V R+ + + W L
Sbjct: 279 CNLTIEEFRLAYLDY-YLDGIIDLFNCLTNV----SSFSLVSVTIERVKDFSYNFGWQHL 333
Query: 171 SFVSC-----------SCNRLVIMDE------SLQLLPAVETLDLSRNKFAKVDNLRKC- 212
V+C S RL S LP++E LDLSRN + + C
Sbjct: 334 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS----FKGCC 389
Query: 213 -------VNLKHLDLGFNNLRSIAA 230
++LK+LDL FN + ++++
Sbjct: 390 SQSDFGTISLKYLDLSFNGVITMSS 414
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 14/190 (7%)
Query: 113 LKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK--DSPQWNRL 170
L+ L L C+L++ + L L + + H + NA+R R+ +K + W L
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA 230
++ +C + +L L ++ +L+ + V R V L+ L+L +N + +I
Sbjct: 214 DTMTPNC----LYGLNLTSL-SITHCNLTAVPYLAV---RHLVYLRFLNLSYNPISTIEG 265
Query: 231 ---FSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLN 287
+ ++LV A+ L L L++S N ++T E F S+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF-HSVGNLET 324
Query: 288 LWLEGNPLCC 297
L L+ NPL C
Sbjct: 325 LILDSNPLAC 334
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 37 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 89
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Query: 113 LKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK--DSPQWNRL 170
L LEL L+T + L E + +N ++ +RI ++ D + RL
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173
Query: 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA 230
S++S + + + L + L+L+ ++ NL + L LDL N+L +I
Sbjct: 174 SYIS---------EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224
Query: 231 FS-EVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLN 287
S + H+ KL + + + + +NL+SL +++++N ++ + L +L
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLER 283
Query: 288 LWLEGNPLCCS 298
+ L NP C+
Sbjct: 284 IHLHHNPWNCN 294
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 118 LRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC 177
L+ D+ ++ K L +L +LE I N+ ++++ P+ L F++
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNN-------------QLEELPELQNLPFLTA-- 199
Query: 178 NRLVIMDESLQLLP----AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE 233
+ + SL+ LP ++E++ N ++ L+ NL L + + + +
Sbjct: 200 --IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ---NLPFLTTIYADNNLLKTLPD 254
Query: 234 VSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 276
+ + L +R+N LT L + +SL LD+S NI S SEL
Sbjct: 255 LPPSLEALNVRDNYLTDLPELP--QSLTFLDVSENIFSGLSEL 295
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 158 IVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN-LRKCVNLK 216
I ++K + +L + S N+L M Q V + L NK ++ LR NL+
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Query: 217 HLDLGFN 223
H DL N
Sbjct: 241 HFDLRGN 247
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 41 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 93
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG +
Sbjct: 45 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELINGYIQ 97
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 182 IMDESLQLLPAVE--TLDLSRNKFAKVDNLRKCVN-LKHLDLGFNNLRSIAAFSEVSCHI 238
+++++ Q AV LDL K ++NL ++ +D N +R + F + +
Sbjct: 8 LIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLR-RL 66
Query: 239 VKLVLRNNALTTL-RGIEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296
L++ NN + + G++ L L L ++ N + +L+ LASL L L + NP+
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Query: 297 CSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331
+ YR ++ + P +D +++ +E E +
Sbjct: 127 NKKHYR--LYVIYKVPQVRVLDFQKVKLKERQEAE 159
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG +
Sbjct: 46 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELINGYIQ 98
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG +
Sbjct: 46 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELINGYIQ 98
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNG 748
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG
Sbjct: 40 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELING 89
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ + +RR S +E+ T K EAL+ +NG +
Sbjct: 46 SSGGKNGQGEPARVRCSHLLVKHSQ--SRRPSSWRQEKITRTKEEALELINGYIQ 98
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 216 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGIENL----KSLEGLDISY 267
+++D+ N +AA E ++ L L NN L L + ++ +L+ L++S
Sbjct: 146 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205
Query: 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-----HPAKLKVDGKEI 322
N + + EL+ + L L LWL+GN LC + +R Q +Y + P L++DG E+
Sbjct: 206 NELKSERELDKIKGL-KLEELWLDGNSLCDT--FRDQS-TYISAIRERFPKLLRLDGHEL 261
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 697 SAGGNDGEVDSSVNQEAHLLEKNKRKHTRRVISLLKEQNTVAKTEALQNLNGNLN 751
S+GG +G+ + + + +HLL K+ +RR S +E+ T K EAL+ +NG +
Sbjct: 42 SSGGKNGQGEPARVRCSHLLVKHS--QSRRPSSWRQEKITRTKEEALELINGYIQ 94
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 216 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGIENL----KSLEGLDISY 267
+++D+ N +AA E ++ L L NN L L + ++ +L+ L++S
Sbjct: 140 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 199
Query: 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLKVDGKEI 322
N + + EL+ + L L LWL+GN LC + ++ S P L++DG E+
Sbjct: 200 NELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 255
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 216 KHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGIENL----KSLEGLDISY 267
+++D+ N +AA E ++ L L NN L L + ++ +L+ L++S
Sbjct: 140 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 199
Query: 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-----HPAKLKVDGKEI 322
N + + EL+ + L L LWL+GN LC + +R Q +Y + P L++DG E+
Sbjct: 200 NELKSERELDKIKGL-KLEELWLDGNSLCDT--FRDQS-TYISAIRERFPKLLRLDGHEL 255
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 158 IVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN-LRKCVNLK 216
I ++K + +L + S N+L M Q V + L NK ++ LR NL+
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Query: 217 HLDL 220
H DL
Sbjct: 241 HFDL 244
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 461 NYIKNKRSQPHLAESSKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIG 518
NY + P + + V S +ES N+ +E Y + T + AY +FD+I
Sbjct: 1437 NYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNIS 1494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,704,447
Number of Sequences: 62578
Number of extensions: 1030241
Number of successful extensions: 2557
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 2452
Number of HSP's gapped (non-prelim): 172
length of query: 950
length of database: 14,973,337
effective HSP length: 108
effective length of query: 842
effective length of database: 8,214,913
effective search space: 6916956746
effective search space used: 6916956746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)