Query 002227
Match_columns 950
No_of_seqs 662 out of 3498
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 19:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1859 Leucine-rich repeat pr 100.0 1.3E-93 2.8E-98 816.2 7.9 878 5-918 1-955 (1096)
2 KOG4194 Membrane glycoprotein 99.9 5.6E-23 1.2E-27 233.5 3.4 296 25-324 101-430 (873)
3 KOG0444 Cytoskeletal regulator 99.9 1.7E-23 3.6E-28 238.1 -2.0 290 24-321 30-373 (1255)
4 PLN00113 leucine-rich repeat r 99.8 1.5E-20 3.3E-25 237.2 16.9 242 67-323 122-369 (968)
5 PLN00113 leucine-rich repeat r 99.8 2.6E-20 5.5E-25 235.1 16.4 196 67-271 168-369 (968)
6 KOG4194 Membrane glycoprotein 99.8 9.1E-21 2E-25 215.7 8.0 255 66-325 81-356 (873)
7 KOG0472 Leucine-rich repeat pr 99.8 1.4E-20 2.9E-25 207.3 -4.3 242 25-296 67-310 (565)
8 KOG0444 Cytoskeletal regulator 99.8 2.7E-20 5.9E-25 212.2 -2.8 261 25-298 102-377 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 3.8E-19 8.2E-24 196.0 -8.4 230 77-326 81-313 (565)
10 KOG1259 Nischarin, modulator o 99.7 1.7E-17 3.6E-22 177.5 3.5 299 16-334 129-451 (490)
11 PRK15387 E3 ubiquitin-protein 99.7 2.6E-16 5.6E-21 191.9 13.6 258 22-328 197-463 (788)
12 KOG0618 Serine/threonine phosp 99.7 1.7E-17 3.8E-22 197.6 1.2 267 27-323 242-513 (1081)
13 PRK15370 E3 ubiquitin-protein 99.7 2.6E-16 5.7E-21 192.4 11.3 260 23-330 175-435 (754)
14 PRK15387 E3 ubiquitin-protein 99.6 6.7E-16 1.4E-20 188.4 13.9 236 24-298 220-460 (788)
15 KOG4237 Extracellular matrix p 99.6 7.1E-17 1.5E-21 178.2 4.2 260 75-349 57-385 (498)
16 KOG0618 Serine/threonine phosp 99.6 1.2E-16 2.5E-21 190.7 1.1 254 28-299 47-423 (1081)
17 PLN03210 Resistant to P. syrin 99.6 2.9E-14 6.3E-19 183.5 16.6 241 67-319 615-878 (1153)
18 KOG0617 Ras suppressor protein 99.5 3.8E-16 8.2E-21 156.4 -1.4 155 85-274 31-189 (264)
19 PF14580 LRR_9: Leucine-rich r 99.5 2.2E-15 4.8E-20 154.5 3.9 158 176-337 5-165 (175)
20 PRK15370 E3 ubiquitin-protein 99.5 1.3E-14 2.9E-19 177.6 10.8 221 67-325 182-403 (754)
21 PLN03210 Resistant to P. syrin 99.5 8.5E-14 1.8E-18 179.3 17.7 285 25-321 588-904 (1153)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.5E-14 5.4E-19 157.0 8.3 155 168-322 137-319 (319)
23 KOG4237 Extracellular matrix p 99.5 3.4E-15 7.4E-20 165.0 1.2 245 30-300 50-363 (498)
24 cd00116 LRR_RI Leucine-rich re 99.5 3.2E-14 7E-19 156.2 7.9 162 168-329 108-297 (319)
25 KOG0617 Ras suppressor protein 99.5 3.8E-16 8.2E-21 156.4 -7.3 183 106-325 28-214 (264)
26 KOG3207 Beta-tubulin folding c 99.4 2E-14 4.3E-19 160.9 0.7 310 3-337 47-379 (505)
27 KOG0532 Leucine-rich repeat (L 99.3 9.6E-13 2.1E-17 151.1 1.0 176 109-299 73-250 (722)
28 PF14580 LRR_9: Leucine-rich r 99.2 2.8E-11 6E-16 124.4 5.9 134 197-333 3-136 (175)
29 KOG2982 Uncharacterized conser 99.1 3.6E-11 7.8E-16 129.6 6.1 221 82-337 66-304 (418)
30 KOG0532 Leucine-rich repeat (L 99.1 2.8E-12 6.2E-17 147.3 -5.1 170 67-274 79-250 (722)
31 COG4886 Leucine-rich repeat (L 99.0 2.5E-10 5.4E-15 130.5 6.2 193 91-298 97-292 (394)
32 COG4886 Leucine-rich repeat (L 99.0 3E-10 6.6E-15 129.8 6.3 182 82-275 111-294 (394)
33 KOG0531 Protein phosphatase 1, 99.0 1.2E-10 2.7E-15 134.7 0.3 228 81-326 89-321 (414)
34 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.2E-15 123.9 0.4 135 189-329 282-418 (490)
35 KOG1909 Ran GTPase-activating 98.9 1.5E-09 3.2E-14 119.7 5.1 238 67-323 34-311 (382)
36 KOG0531 Protein phosphatase 1, 98.8 4.6E-10 1E-14 129.9 -1.5 218 84-323 69-290 (414)
37 KOG3207 Beta-tubulin folding c 98.8 3.7E-10 7.9E-15 127.2 -2.9 211 108-327 118-343 (505)
38 KOG1909 Ran GTPase-activating 98.8 2.8E-09 6E-14 117.6 2.4 244 25-299 29-314 (382)
39 KOG1644 U2-associated snRNP A' 98.7 2.7E-08 5.9E-13 103.0 5.7 138 194-334 22-162 (233)
40 KOG1859 Leucine-rich repeat pr 98.5 6.9E-09 1.5E-13 122.3 -5.2 134 192-332 165-301 (1096)
41 PLN03150 hypothetical protein; 98.3 6.3E-07 1.4E-11 109.3 7.3 104 88-224 419-526 (623)
42 PLN03150 hypothetical protein; 98.3 1.1E-06 2.5E-11 107.0 7.9 104 112-248 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.3 6.2E-07 1.3E-11 75.9 3.4 59 236-295 1-61 (61)
44 KOG2123 Uncharacterized conser 98.2 1.4E-07 3.1E-12 101.5 -2.3 117 212-331 18-136 (388)
45 PF13855 LRR_8: Leucine rich r 98.1 1.7E-06 3.6E-11 73.3 3.2 57 169-225 2-61 (61)
46 KOG2982 Uncharacterized conser 98.1 2.4E-06 5.2E-11 93.0 3.8 204 65-298 73-292 (418)
47 KOG1644 U2-associated snRNP A' 98.1 5.3E-06 1.1E-10 86.4 5.8 123 171-294 22-151 (233)
48 COG5238 RNA1 Ran GTPase-activa 97.9 5.5E-06 1.2E-10 89.4 3.7 91 236-326 214-319 (388)
49 KOG4658 Apoptotic ATPase [Sign 97.9 8.4E-06 1.8E-10 102.6 4.7 206 80-298 564-785 (889)
50 KOG4658 Apoptotic ATPase [Sign 97.8 5.6E-06 1.2E-10 104.1 1.7 79 66-145 574-652 (889)
51 COG5238 RNA1 Ran GTPase-activa 97.7 3.1E-05 6.6E-10 83.7 4.7 217 82-324 25-286 (388)
52 PF12799 LRR_4: Leucine Rich r 97.6 7.3E-05 1.6E-09 59.9 4.1 41 169-209 2-42 (44)
53 KOG4579 Leucine-rich repeat (L 97.6 3.8E-06 8.3E-11 82.7 -3.9 106 169-274 28-139 (177)
54 KOG4579 Leucine-rich repeat (L 97.6 6.6E-06 1.4E-10 81.1 -2.6 132 192-329 28-165 (177)
55 KOG2739 Leucine-rich acidic nu 97.5 5.8E-05 1.3E-09 81.4 3.5 113 191-326 43-157 (260)
56 PF12799 LRR_4: Leucine Rich r 97.4 0.00013 2.7E-09 58.5 3.5 38 237-274 2-40 (44)
57 KOG2120 SCF ubiquitin ligase, 97.4 4.9E-06 1.1E-10 90.7 -6.2 15 111-125 185-199 (419)
58 PRK15386 type III secretion pr 97.3 0.0011 2.4E-08 76.7 10.4 43 83-129 48-90 (426)
59 KOG2120 SCF ubiquitin ligase, 97.2 3.4E-05 7.3E-10 84.3 -2.4 43 79-121 202-244 (419)
60 KOG3665 ZYG-1-like serine/thre 97.1 0.0003 6.5E-09 86.8 2.8 106 167-272 147-264 (699)
61 PRK15386 type III secretion pr 97.0 0.0019 4.1E-08 74.9 8.9 19 107-125 48-66 (426)
62 KOG3665 ZYG-1-like serine/thre 96.7 0.0012 2.7E-08 81.5 4.1 127 168-295 122-262 (699)
63 KOG2123 Uncharacterized conser 96.4 0.00017 3.7E-09 78.4 -4.9 63 167-230 18-80 (388)
64 KOG2739 Leucine-rich acidic nu 95.9 0.0051 1.1E-07 66.7 3.0 98 234-333 41-139 (260)
65 PF13306 LRR_5: Leucine rich r 95.6 0.039 8.5E-07 52.6 7.7 113 166-285 10-128 (129)
66 KOG3763 mRNA export factor TAP 95.0 0.011 2.4E-07 69.8 1.7 90 233-325 215-314 (585)
67 KOG4308 LRR-containing protein 94.0 0.0011 2.4E-08 78.7 -9.4 181 89-298 89-305 (478)
68 PF13306 LRR_5: Leucine rich r 93.8 0.11 2.5E-06 49.4 5.7 109 82-229 7-118 (129)
69 KOG4308 LRR-containing protein 91.6 0.01 2.2E-07 70.5 -5.9 197 75-295 103-330 (478)
70 KOG1947 Leucine rich repeat pr 90.6 0.18 3.8E-06 58.7 3.1 39 83-121 184-224 (482)
71 PF00560 LRR_1: Leucine Rich R 88.4 0.26 5.6E-06 33.6 1.3 21 169-189 1-21 (22)
72 KOG0473 Leucine-rich repeat pr 87.5 0.021 4.5E-07 61.3 -6.8 87 208-296 37-124 (326)
73 KOG4341 F-box protein containi 87.3 0.2 4.4E-06 57.8 0.4 128 189-318 292-434 (483)
74 PF00560 LRR_1: Leucine Rich R 86.0 0.28 6.1E-06 33.4 0.4 20 112-132 1-20 (22)
75 KOG0473 Leucine-rich repeat pr 80.7 0.06 1.3E-06 57.9 -6.8 85 187-271 38-124 (326)
76 PF13504 LRR_7: Leucine rich r 78.1 1.4 3.1E-05 28.3 1.5 16 169-184 2-17 (17)
77 PF13504 LRR_7: Leucine rich r 77.1 1.5 3.2E-05 28.2 1.3 12 260-271 3-14 (17)
78 KOG1947 Leucine rich repeat pr 75.6 1 2.2E-05 52.4 0.4 107 190-296 187-308 (482)
79 KOG3763 mRNA export factor TAP 70.3 3 6.6E-05 50.0 2.7 76 255-333 215-293 (585)
80 TIGR00864 PCC polycystin catio 69.7 3.9 8.4E-05 57.2 3.8 38 264-302 1-38 (2740)
81 smart00370 LRR Leucine-rich re 67.0 4.6 0.0001 28.2 2.1 19 168-186 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 67.0 4.6 0.0001 28.2 2.1 19 168-186 2-20 (26)
83 PF13516 LRR_6: Leucine Rich r 66.9 2.3 5E-05 29.2 0.5 22 110-131 1-22 (24)
84 smart00370 LRR Leucine-rich re 64.3 5.9 0.00013 27.7 2.2 19 257-275 1-19 (26)
85 smart00369 LRR_TYP Leucine-ric 64.3 5.9 0.00013 27.7 2.2 19 257-275 1-19 (26)
86 KOG3864 Uncharacterized conser 62.8 1.2 2.6E-05 47.4 -2.3 39 257-296 150-189 (221)
87 smart00365 LRR_SD22 Leucine-ri 53.8 11 0.00024 27.1 2.1 15 192-206 3-17 (26)
88 smart00365 LRR_SD22 Leucine-ri 50.0 13 0.00029 26.7 2.0 18 213-230 2-19 (26)
89 PHA02858 EIF2a-like PKR inhibi 49.4 29 0.00062 32.1 4.5 70 827-901 6-79 (86)
90 KOG3864 Uncharacterized conser 48.8 12 0.00026 40.0 2.4 78 67-144 105-185 (221)
91 KOG4341 F-box protein containi 41.9 20 0.00043 42.2 2.9 56 68-123 273-332 (483)
92 PF15410 PH_9: Pleckstrin homo 40.9 27 0.00058 33.9 3.3 30 893-922 86-115 (119)
93 smart00364 LRR_BAC Leucine-ric 40.1 18 0.00039 26.2 1.4 18 258-275 2-19 (26)
94 smart00368 LRR_RI Leucine rich 32.9 33 0.00071 24.7 1.9 15 111-125 2-16 (28)
No 1
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=100.00 E-value=1.3e-93 Score=816.20 Aligned_cols=878 Identities=43% Similarity=0.628 Sum_probs=744.0
Q ss_pred cchhhHHHHHHHHhhcccccccCCcEEEec-CCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHh
Q 002227 5 TGDRYLEKLVKFVEQQAGPLIEGSIVLKLN-PAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRIL 83 (950)
Q Consensus 5 ~G~~yl~~li~~l~~~~~slL~~l~~L~L~-~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L 83 (950)
+|++|++.+.+|++.+++.++.+..+|.|+ +..++....++..+.+|+....+.+.+++++.+.+.++.+.+.++..++
T Consensus 1 ~~d~~l~kLa~lLre~gD~lLsg~~tL~L~~p~l~~lnh~~l~s~~EL~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~ 80 (1096)
T KOG1859|consen 1 TGDRYLEKLANLLRENGDKLLSGTFTLKLNGPALLHLNHLRLISLRELELGLSGAPVDYFRAYVSDNADSRVLEQLQRIL 80 (1096)
T ss_pred CccHHHHHHHHHHHhcccceecceeEEEeccHHHHHHHHHHHHhhHHHhhccCCCCCceeEEecCCcccchHHHHHHHHH
Confidence 589999999999999999999999999999 4455555666788888888888999999999999999999999998888
Q ss_pred cCCCCCcEEEccCCCCCCCC-CccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 84 KLLTSLKVVSALPPPARDPT-PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 84 ~~L~~L~~LdLs~N~L~~~i-P~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
.-+++++.|.+-.-.-.+.. |-.|..+..|+.|.|.++.|.. ..++..+.+.++.++|+|.++++++++..++.++.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 88888888887666555544 7789999999999999999976 77899999999999999999999999999999999
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEE
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~ 242 (950)
+-+.|..|...++++|.|..+..++.-++.|+.|+|++|+++.+..+..|+.|++|||++|.++.+|.+...-..|+.|.
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765445699999
Q ss_pred ecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccC---CCcccccCC
Q 002227 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA---HPAKLKVDG 319 (950)
Q Consensus 243 Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~---~L~~L~Ldg 319 (950)
|++|.++.+.++.++.+|+.|||++|.|.+...+..++.|..|+.|+|.|||++|.+|+|...+.++. .+..+.|||
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDg 318 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDG 318 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecc
Confidence 99999999999999999999999999999998888899999999999999999999999999988887 677899999
Q ss_pred CcCChhHHHHHHHHHHhhcCCCCCccccCCCCCCCCCCCchhhhhhhhhhhccccccccccccC--CCCCCcCCCccccc
Q 002227 320 KEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVG--SDRESVSCDNEIES 397 (950)
Q Consensus 320 N~Is~~e~~~~~~l~~~~~~~p~~~~~~~p~~~~~~~e~~~~~k~k~~~Rla~i~~ee~~~~~~--SdqeS~~c~~~s~s 397 (950)
..++..++++.+.....+...|..|+.|+|+......++++.++++++.+++.+..++...++. |++++..|+.+..+
T Consensus 319 k~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~~~~~~dgS~~~s~gki~tl~~ihs~~~s~~v~r~S~~e~at~DpE~~s 398 (1096)
T KOG1859|consen 319 KALGGREFWKRQSGVSHRSSRPASYGFYSPARSENTSDGSQFRSKGKIYTLASIHSEDESTYVNRISDCESATCDPEESS 398 (1096)
T ss_pred eeccchhhhhhhhheecCCCCCCCCCCCCchhccCCCccchhhhcCceeecccccchhhhheeccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988887 89999999888665
Q ss_pred c--cccCCCcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhcccccccCcceeeCcccccccchhhhhhccCCccc-cc
Q 002227 398 K--EENVASDDDAEIIDLMSRVEHMKRERSILWLREFKEWMDHTSENFVDGSICSGATLMNCEEDNYIKNKRSQPHL-AE 474 (950)
Q Consensus 398 ~--ee~~~sd~d~ei~dl~~~vE~Lkke~s~~Wl~ef~ew~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 474 (950)
. .+.+....+..+.++++++++++++++..|+|+|+|||+.....++++.+.+..+.++++ +|.+.....++| +.
T Consensus 399 ~~~t~a~~f~q~~pe~el~s~~~hl~~~r~vl~lR~~~Ew~~~p~~~~~~~s~~sqpt~seq~--~~tk~rn~p~~e~~g 476 (1096)
T KOG1859|consen 399 EINTEAAKFSQEAPEFELISKVEHLKKERSVLWLREFKEWLDSPNEDFMDVSKTSQPTESEQK--YYTKLRNEPLHEGSG 476 (1096)
T ss_pred cCCCccccccCCCchhhhccchHHHhhhhhHHHHHHHhhhhcCCchhhccccCCCCCcchhcC--cccccCCCCcccccC
Confidence 5 556666677778999999999999999999999999999999999999999999999986 344444444444 48
Q ss_pred ccccccccccccCCCCcccccccCCccccCcccccccccccccCccccccCcccCCcccccccccccCCccCCCCCcccc
Q 002227 475 SSKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIGSLGITGGFSLPGIGRMELRQENEKPYLHDGAGAATV 554 (950)
Q Consensus 475 ~s~~~~~~~~~~~~~~~~~~~e~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (950)
+.||++|+..++-..+.+|.+|..++|.|+-+|+..+++.....++-+|.....+.-.-.|+||.+ +.+++||....
T Consensus 477 ~p~~tp~sl~~~i~~~p~~n~e~~~~~~~~~~g~~~e~~~e~~et~~et~~e~~~~~~et~ln~~~---~~c~legpp~~ 553 (1096)
T KOG1859|consen 477 TPRYTPGSLHHNISSTPTNNVELASTFDATITGIKSEANDESGETLYETCTEGEETNQETDLNQKH---QLCTLEGPPDR 553 (1096)
T ss_pred CCcCCCCccchhhccCcccchhhcccccccccchhhhcccccccccccccccchhhhhhhhccccc---eeccccCCccc
Confidence 999999999999999999999999999999999999999999999999988888888899999666 89999999988
Q ss_pred c-------ccccccccccccccccccccccCCCccccccccCCCCCCCCCCCCcchhhhhhhhhhhHHHHHhhccce---
Q 002227 555 Q-------SKSFHQDTFTIQDRRMVENIHESPLTPIDDITDAFSSSARPGSPPHYREDILHRRHNLVAEILQLSAES--- 624 (950)
Q Consensus 555 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~spp~~~~d~l~rr~~~~~e~lq~~~~~--- 624 (950)
+ +.|-+-.++.+++.+..|||+|+.+. +.++---+.+|+||||||+|+|+||+||++||||++||+
T Consensus 554 ~~~~~~l~vss~~l~e~~l~~a~~dE~~~m~tle----a~q~e~~s~~~sSp~~~~kD~L~~r~~lsl~il~ic~d~~~~ 629 (1096)
T KOG1859|consen 554 HEELLRLYVSSSNLQEDPLSDAESDENGNMSTLE----AKQSETGSLTPSSPPHYQKDVLTRRANLSLEILQICADSRSI 629 (1096)
T ss_pred chhhheeecccccccccchhhhhhhcccceeeee----cccccccccCCCCCCCccccccccchhHHHHHHHhCcccccc
Confidence 8 88888889999999999999999984 444434448999999999999999999999999999999
Q ss_pred -eeeeeCCCCCcCCccCCCCCCC--CcccccccCCcccccCccccccccchhc-------cccC--CC-CC--Cccccc-
Q 002227 625 -YSVVSSDSKTSCSDDDFREYGP--SMLEVDQSINPEHEYSSAEVHSLLNLFE-------EDHN--DQ-PH--EIDCQR- 688 (950)
Q Consensus 625 -~~~~s~~~~~s~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~-~~--~~~~~~- 688 (950)
|+|+|+|+.++|++++.++.+. ++.|+ ....+.+..|++. .--| +| +. .|--.+
T Consensus 630 ~y~v~~~D~~ss~~e~en~ls~~~~~~~eq----------~~~~rdL~~~r~~i~~C~~cgt~F~~eqp~kg~~~kelr~ 699 (1096)
T KOG1859|consen 630 NYSVASSDKQSSCSEVENYLSEELESNLEQ----------ILLQRDLTENRISIYRCVNCGTQFLIEQPEKGSKIKELRC 699 (1096)
T ss_pred cceeecccccchhhhhhhcccHhhhhhHhh----------hhhhhhhhccccceeeeccccccccccCcccccchhhhcC
Confidence 9999999999999999998877 56553 3334444444431 0001 11 11 122222
Q ss_pred cc-cc--cccccCCCCCCCccccchhhhhHHHhcc--ccccceeeehhhccccchhhhhhhhccCCcccCccccccCCcc
Q 002227 689 EN-CK--NNGFSAGGNDGEVDSSVNQEAHLLEKNK--RKHTRRVISLLKEQNTVAKTEALQNLNGNLNISEADNVGEQGK 763 (950)
Q Consensus 689 ~~-~~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (950)
++ +| +++|.+|.|.-+-.++|||+.+|..|+- |||++|.+..+++..-+ -++|--|+- .+.+|..+
T Consensus 700 pd~~k~~t~~v~~~~~s~~~~~~v~a~~rl~p~~~~~rkp~e~~~ap~~~es~~----ci~kg~~sh-l~~ad~s~---- 770 (1096)
T KOG1859|consen 700 PDSRKVYTTNVTSGLHSLKPSGGVNAEPRLSPKMIVERKPVERLVAPINEESSN----CIGKGEASH-LSDADISD---- 770 (1096)
T ss_pred cchhhcccccccccccccCCccceecccccCcchhhhccchhhhcccccccccc----ccCccchhh-hhhcccCC----
Confidence 33 34 7899999999777789999999999988 99999999988876510 011111221 22222222
Q ss_pred eeeeccccccccchhc-ccccc-ccccccc--cccccccccccch-----hhh-HHHhhhccccCCchhHhhccceEE-E
Q 002227 764 HIFGLNYLLRTSDKKQ-TRENA-VMTPYIS--GIGSVAKFLSSVK-----EDF-VEDYFNKNVADSKSHETCMQYTVC-W 832 (950)
Q Consensus 764 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~-----~~~-~~~~f~~~~~~~~~~e~~~~~~~~-~ 832 (950)
.+-..++.++ ..+|. -...|-. -..|...|.+|+. ..| ++.||-+..|+++..|+|+.||.| +
T Consensus 771 ------~~e~~~~rDh~fw~ns~lp~~c~~~~~~~rs~~FLe~E~~~~~~e~~q~~~~~paklav~S~~~~c~~~vS~~~ 844 (1096)
T KOG1859|consen 771 ------SDEDNTIRDHEFWENSSLPHLCTSHDEVARSKSFLETEFGLLLAEQAQVEELFPAKLAVSSHVETCRSYVSCDV 844 (1096)
T ss_pred ------ccccccccccchhccCCCCcccccchhhHHHHHHHHHHhhhhhhhhcccccccchhhccCCCCceeEEEecccc
Confidence 1111122222 12222 1111111 0111223444433 344 899999999999999999999999 9
Q ss_pred EEecCCccccee-------EEEEeecCCeeEEEEEeeeecCCcccccccccccchhhHHHhhhccceEEEEE--------
Q 002227 833 ILEQDFMHRGRE-------VAVLRSSENKFYVLLFGVTVDGTGSILNLLGCHKIEDIREVLIGLGLQVLRVS-------- 897 (950)
Q Consensus 833 ~~~~~~~~~~~e-------~~~l~ss~~k~~~ll~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~glq~~r~~-------- 897 (950)
|+|.+++|+||| ++||++||||+||+|++|+.|-+++.++++|.|-+.|+|.|.||||+|++++.
T Consensus 845 i~~~~sTyeqre~~a~~lq~~Ll~~sqd~l~~gl~g~S~~le~sa~s~~c~~~~~d~q~~~~~l~~~~~~Les~~~~~~~ 924 (1096)
T KOG1859|consen 845 ILQICSTYEQRETDAPQLQNVLLLSSQDKLYVGLVGVSTDLEKSALSALCSHFISDFQDVSVGLGLQKVLLESEATVFQP 924 (1096)
T ss_pred hhhhhchhhhcCCCchhhhheeecccccceeeeeccccchhhhhhcccccccchhhhhhhhhHHHHHHHHHhccchhhhc
Confidence 999999999999 99999999999999999999999999999999999999999999999998765
Q ss_pred ----------eecCcEEEEEeccHHHHHHHh
Q 002227 898 ----------TEMGATYLLMTRSIEKSRQLF 918 (950)
Q Consensus 898 ----------~~~~~~~~~~t~~~~~~~~~~ 918 (950)
+-..-.|+|.+|+++|+++++
T Consensus 925 ~~~~~~~~~~i~hrl~~~f~~~~fkE~~e~f 955 (1096)
T KOG1859|consen 925 YKFNYSDFNDIDHRLKLYFYQRKFKEDGELF 955 (1096)
T ss_pred cccccccccchhhhhhhhhhhhhhhhhhHHH
Confidence 345567899999999999995
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.6e-23 Score=233.49 Aligned_cols=296 Identities=21% Similarity=0.215 Sum_probs=218.8
Q ss_pred ccCCcEEEecCCCccchhhhhhhccccccccCCC---------Ccccc-ccccccCCCCccchhHHH-HhcCCCCCcEEE
Q 002227 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA---------PLDYL-RAYVSDLGDHRALEQLRR-ILKLLTSLKVVS 93 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~---------~L~~L-~l~vLdLs~n~~l~~Lp~-~L~~L~~L~~Ld 93 (950)
+.+++.+.++.+.|..||....-...|+.|.... .+.++ .+..+||+.|. +.++|. .|..-.+|++|+
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEe
Confidence 3445666677777777775443333344433211 12222 23467888875 444543 567778899999
Q ss_pred ccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccC----------
Q 002227 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD---------- 163 (950)
Q Consensus 94 Ls~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~---------- 163 (950)
|++|.|+..-...|..|.+|..|.|+.|+|+...+..|..|++|..|.+..|.|..+..+.+..++++.+
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 9999999888899999999999999999999888888888999999999999988877776666554443
Q ss_pred -----CCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCcccccc-cccc
Q 002227 164 -----SPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEV 234 (950)
Q Consensus 164 -----L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~-l~~~ 234 (950)
+-.+.++++|+|..|+++.+.. .+.++..|+.|+||+|.|..+ +.+...++|+.|+|++|+|+.+++ .+..
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 2456788888888888887754 677888888899999988876 477778889999999999888875 3345
Q ss_pred ccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCch--hhhcCCCCCCcEEEecCCCCCCCcccchhHhhccC
Q 002227 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSE--LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (950)
Q Consensus 235 L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~--l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~ 310 (950)
+..|+.|+|++|+|+.+. .|..+.+|+.|||++|.|+-... -..+..|+.|+.|.|.||+|...+ .+.|..++
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAfsgl~ 416 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAFSGLE 416 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhhccCc
Confidence 677888888888888774 67778888888888887753211 134667888888888888886443 56778888
Q ss_pred CCcccccCCCcCCh
Q 002227 311 HPAKLKVDGKEIST 324 (950)
Q Consensus 311 ~L~~L~LdgN~Is~ 324 (950)
.|+.|+|.+|.|..
T Consensus 417 ~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 417 ALEHLDLGDNAIAS 430 (873)
T ss_pred ccceecCCCCccee
Confidence 88888888887753
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.7e-23 Score=238.06 Aligned_cols=290 Identities=22% Similarity=0.215 Sum_probs=185.4
Q ss_pred cccCCcEEEecCCCccchhhhhhhccccccccCCC-C----------ccc-----------------------ccccccc
Q 002227 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-P----------LDY-----------------------LRAYVSD 69 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~-~----------L~~-----------------------L~l~vLd 69 (950)
-+..++||.|+...|..+|+.+..|.+|++|.... . +.. -++.++|
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 35567899999999999999999999999864321 1 001 1122344
Q ss_pred CCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCcc
Q 002227 70 LGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA 149 (950)
Q Consensus 70 Ls~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~s 149 (950)
|++|+ +.+.|..+..-+++-.|+|++|.|..+.-.-|.+|+.|-+||||+|++.. +|+.+..|..|+.|.+++|.+..
T Consensus 110 LShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH
Confidence 44443 33444444444455555555555443222333445555555555555532 44444555555555555553321
Q ss_pred ch-----hhhc-------c---cccccc-CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCC
Q 002227 150 LR-----HVFA-------S---RIVEIK-DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKC 212 (950)
Q Consensus 150 L~-----~l~~-------~---~i~~L~-~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L 212 (950)
.. .... + .+..++ .+..+.+|..++++.|.|..+|+.+..+++|+.|+||+|+|+.+. .....
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W 267 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEW 267 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHH
Confidence 11 0000 0 000111 122456677777777777777777777778888888888877764 44555
Q ss_pred CCCcEEECCCCCccccccccccccceeEEEecCCCCCC--cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEE
Q 002227 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (950)
Q Consensus 213 ~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~--Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~ 289 (950)
.+|++|+||.|+++.+|.....++.|+.|.+.+|+|+. || +++.+..|+.+..++|.+.-+| ..+..+++|+.|.
T Consensus 268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLK 345 (1255)
T ss_pred hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhc
Confidence 67777888888888777776667788888888887654 55 7888888888888888888777 6788889999999
Q ss_pred ecCCCCCCCcccchhHhhccCCCcccccCCCc
Q 002227 290 LEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (950)
Q Consensus 290 LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~ 321 (950)
|+.|.+...| ..+..++.+..|+|..|+
T Consensus 346 L~~NrLiTLP----eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 346 LDHNRLITLP----EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccccceeech----hhhhhcCCcceeeccCCc
Confidence 9999987666 456678889999998885
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.5e-20 Score=237.19 Aligned_cols=242 Identities=21% Similarity=0.186 Sum_probs=118.8
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
.+++++|...+.+|. ..+++|++|+|++|.+.+.+|..|+.+++|++|+|++|.+.+.+|..+.++++|..+.+.+|.
T Consensus 122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 445555554444443 345555566665555555555555555666666666665555555555555555555555554
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCC-Cc-CcCCCCCCcEEECCCC
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFN 223 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~L~~L~~LdLS~N 223 (950)
+..... . .+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|
T Consensus 200 l~~~~p---~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 200 LVGQIP---R------ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CcCcCC---h------HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 332110 0 1123445555555555554 444455555555555555555543 22 4455555555555555
Q ss_pred Cccc-cccccccccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 224 NLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 224 ~L~~-L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
.+.+ ++..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+..+ ..+..+++|+.|+|++|.+....
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~- 348 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEI- 348 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcC-
Confidence 5543 23333334455555555555543 22 34445555555555555544322 33445555555555555554221
Q ss_pred cchhHhhccCCCcccccCCCcCC
Q 002227 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 301 ~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
...+..++.|+.++|++|.+.
T Consensus 349 --p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 349 --PKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred --ChHHhCCCCCcEEECCCCeeE
Confidence 122334444555555555443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.6e-20 Score=235.12 Aligned_cols=196 Identities=22% Similarity=0.179 Sum_probs=96.6
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
.+++++|...+.+|..+.++++|++|+|++|.+.+.+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 45555555555566666666666666666666666666666666666666666666666666666666666666666654
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCC-Cc-CcCCCCCCcEEECCCC
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFN 223 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~L~~L~~LdLS~N 223 (950)
+...... .+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|
T Consensus 248 l~~~~p~---------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 248 LTGPIPS---------SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred eccccCh---------hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 4321110 0123334444444444443 334444444444444444444442 12 2344444444444444
Q ss_pred Cccc-cccccccccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCCCCC
Q 002227 224 NLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIIS 271 (950)
Q Consensus 224 ~L~~-L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N~Ls 271 (950)
.+.+ ++..+..+++|+.|+|++|.++. +| .+..+++|+.|+|++|.+.
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 4432 22222333444444444444432 22 3344444444444444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=9.1e-21 Score=215.71 Aligned_cols=255 Identities=22% Similarity=0.215 Sum_probs=203.2
Q ss_pred ccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 002227 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (950)
Q Consensus 66 ~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N 145 (950)
..+|+++|+.-..-+..|.++++|+.++|..|.++ .+|.......+|+.|+|.+|.|+.+-...+..++.+..++++.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34889988766666778999999999999999987 78887777788999999999999988899999999999999999
Q ss_pred CCccchhhhc-------------ccccccc--CCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--
Q 002227 146 STNALRHVFA-------------SRIVEIK--DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD-- 207 (950)
Q Consensus 146 ~L~sL~~l~~-------------~~i~~L~--~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~-- 207 (950)
.|..++.-.+ +.|+.+. .+..+.+|..|.|+.|+|+.+|. .|.+++.|+.|+|..|+|..+.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 8877664322 2232222 34566677777888888887776 5666888888888888777664
Q ss_pred CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCC
Q 002227 208 NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (950)
Q Consensus 208 ~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~ 284 (950)
.|.++++|+.|.|..|.|..+.. .+..+.++++|+|..|+++.+. ++.+++.|+.|+|++|.|..+.. +.+...++
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~Wsftqk 318 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQK 318 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-chhhhccc
Confidence 57777778888888888777654 4456788999999999998874 88889999999999999998865 66788899
Q ss_pred CcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 285 LLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 285 L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
|+.|+|+.|.|+..+ ...|..+..|+.|.|..|.|+..
T Consensus 319 L~~LdLs~N~i~~l~---~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 319 LKELDLSSNRITRLD---EGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred ceeEeccccccccCC---hhHHHHHHHhhhhcccccchHHH
Confidence 999999999998665 46677888888999999988754
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.4e-20 Score=207.25 Aligned_cols=242 Identities=27% Similarity=0.311 Sum_probs=200.9
Q ss_pred ccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 002227 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP 104 (950)
+..+.+|.+..+.+..+|..++.+..+.. ++.++|+ +.++|..+..+.+|+.|+++.|.+. .+|
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~--------------l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~-el~ 130 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKS--------------LNVSHNK-LSELPEQIGSLISLVKLDCSSNELK-ELP 130 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHH--------------hhcccch-HhhccHHHhhhhhhhhhhcccccee-ecC
Confidence 34445666666666666666655554333 3445553 6678888888888888888888887 677
Q ss_pred ccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccch
Q 002227 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD 184 (950)
Q Consensus 105 ~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP 184 (950)
+.++.+..|+.|+..+|+++. .|.++..+.++..+++.+|.+..++.-. -+|+.|++|++..|-+..+|
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~----------i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENH----------IAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred chHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHH----------HHHHHHHhcccchhhhhcCC
Confidence 788888888888888888875 7778888888888888888877776533 24779999999999999999
Q ss_pred hhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccc-cccceeEEEecCCCCCCcc-cCCCCCCCCE
Q 002227 185 ESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE-VSCHIVKLVLRNNALTTLR-GIENLKSLEG 262 (950)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~-~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~ 262 (950)
+.++.+.+|..|+|.+|+|..+|.|.++..|+.|.++.|.|..+|.... .+++|..|+|..|+++.+| .+.-+.+|..
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999986543 7889999999999999988 7888999999
Q ss_pred EEccCCCCCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 263 LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
||+++|.|+.+| ..++++ .|+.|-+.|||+.
T Consensus 280 LDlSNN~is~Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDISSLP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccccCC--cccccc-eeeehhhcCCchH
Confidence 999999999998 678999 8999999999996
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.7e-20 Score=212.16 Aligned_cols=261 Identities=21% Similarity=0.213 Sum_probs=213.2
Q ss_pred ccCCcEEEecCCCccchhhhhhhccccccccC----------CCCccccccccccCCCCccchhHHHHhcCCCCCcEEEc
Q 002227 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLA----------GAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~----------~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdL 94 (950)
+..+.+|+|+.+.|+.+|..+..-+++-.|.. .-.+...++..+||++|+ ++.+|..+.+|.+|+.|.|
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhc
Confidence 55677888999999999888876655443322 112333455567887775 7778888888888888888
Q ss_pred cCCCCCCCCCccCCCCCCCcEEEeeCCCCC-ccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEE
Q 002227 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLS-TSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (950)
Q Consensus 95 s~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls-~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L 173 (950)
++|.+...--..+..++.|++|.+++.+=+ ..+|.++..|.+|..++++.|++..++... -++.+|+.|
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl----------y~l~~LrrL 250 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL----------YKLRNLRRL 250 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH----------hhhhhhhee
Confidence 888775443445556778888888876644 357889999999999999999888887654 357799999
Q ss_pred EccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcc--ccccccccccceeEEEecCCCCCC
Q 002227 174 SCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRNNALTT 250 (950)
Q Consensus 174 ~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~--~L~~l~~~L~~L~~L~Ls~N~Ls~ 250 (950)
+|++|.|+.+....+...+|++|+||+|+++.+| .+..++.|+.|.+.+|+++ +||..++.+..|+.+..++|.|.-
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 9999999988777888899999999999999987 7999999999999999876 789888888999999999999999
Q ss_pred cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 251 LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 251 Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
+| ++..|+.|+.|.|+.|++-.+| +.+.-++.|..|+|..||-.-.
T Consensus 331 VPEglcRC~kL~kL~L~~NrLiTLP--eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLITLP--EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred CchhhhhhHHHHHhcccccceeech--hhhhhcCCcceeeccCCcCccC
Confidence 87 8999999999999999999998 6778899999999999985433
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=3.8e-19 Score=195.96 Aligned_cols=230 Identities=19% Similarity=0.190 Sum_probs=156.5
Q ss_pred hhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcc
Q 002227 77 EQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFAS 156 (950)
Q Consensus 77 ~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~ 156 (950)
.++|..++.+..++.|+.++|++. .+|..+..+.+|..|+.++|.+.. +|.+++.+..+..++..+|++.+++..+
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~slp~~~-- 156 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISSLPEDM-- 156 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccccCchHH--
Confidence 334444555555555555555544 445555555555555555555543 4445555555555555555555554433
Q ss_pred ccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccccccccccc
Q 002227 157 RIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVS 235 (950)
Q Consensus 157 ~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L 235 (950)
..+.+|..|++.+|.++.+|+..-.+..|+.|++..|.+..+| .++.+.+|..|+|..|+|..+|. +..+
T Consensus 157 --------~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gc 227 (565)
T KOG0472|consen 157 --------VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-FPGC 227 (565)
T ss_pred --------HHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-CCcc
Confidence 2345677778888888877776556778888888888888765 78888888888888888888874 4455
Q ss_pred cceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCc
Q 002227 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPA 313 (950)
Q Consensus 236 ~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~ 313 (950)
..|..|.++.|.|..+| ...++++|.+|||+.|+++.+| +.+.-+.+|..|++++|.|+..+ ..+..+ .|+
T Consensus 228 s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P--de~clLrsL~rLDlSNN~is~Lp----~sLgnl-hL~ 300 (565)
T KOG0472|consen 228 SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP--DEICLLRSLERLDLSNNDISSLP----YSLGNL-HLK 300 (565)
T ss_pred HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc--hHHHHhhhhhhhcccCCccccCC----cccccc-eee
Confidence 77888888888888876 4567888888899889888887 45667788888899999888776 234455 678
Q ss_pred ccccCCCcCChhH
Q 002227 314 KLKVDGKEISTRE 326 (950)
Q Consensus 314 ~L~LdgN~Is~~e 326 (950)
.+.|.|||+.+..
T Consensus 301 ~L~leGNPlrTiR 313 (565)
T KOG0472|consen 301 FLALEGNPLRTIR 313 (565)
T ss_pred ehhhcCCchHHHH
Confidence 8888999887654
No 10
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=1.7e-17 Score=177.49 Aligned_cols=299 Identities=24% Similarity=0.330 Sum_probs=215.1
Q ss_pred HHhhcccccccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEcc
Q 002227 16 FVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (950)
Q Consensus 16 ~l~~~~~slL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs 95 (950)
.+...++.++..-+...+.+-.+.++.+++..-+ ...+..+.+ ..++ ..+.-+..|++|-++
T Consensus 129 ~~~e~g~~ll~~~~~~~~~~l~~yaise~l~~~~-p~~~~~~~k--------------~d~~---hildf~~~l~~l~vs 190 (490)
T KOG1259|consen 129 LFNESGDALLSSKKEYNLSALEVYAISERLSLPC-PPSLDRGGK--------------YDFS---HVLDFCTQLVALVVT 190 (490)
T ss_pred HHHhhhHHHhccCceecccchhhhhHHHHhcCCC-CCccCCCCc--------------cchH---HHHHhhhheeEEEec
Confidence 3444677778888888999989888887765322 222322222 1122 223335566666655
Q ss_pred CC--------CCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhh-hhhhhhccCCCccchhhhcccc--------
Q 002227 96 PP--------PARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRH-TLEKIICHNSTNALRHVFASRI-------- 158 (950)
Q Consensus 96 ~N--------~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~-Ll~LlL~~N~L~sL~~l~~~~i-------- 158 (950)
+. -+...+|-.+.-+.+|..+.++.+.-..+ .++..++. |..+......+...+.+.+...
T Consensus 191 ~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i--~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E 268 (490)
T KOG1259|consen 191 PVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI--VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSE 268 (490)
T ss_pred CCCCCCccccccccccccchHHhhhhheeeeeccchhhe--eceeecCchhheeeeecccccccccccchhhhcCccCCC
Confidence 42 12223444555667777777777643321 11111111 1121111111111111111100
Q ss_pred ------ccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCcccccccc
Q 002227 159 ------VEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS 232 (950)
Q Consensus 159 ------~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~ 232 (950)
+-+..+..|..|+.|+|++|.|+.+.+++.-+|.++.|++|+|.|..+..+..+++|+.|||++|.++.+..+.
T Consensus 269 ~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 269 PSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred CCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhH
Confidence 11123467899999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCC-
Q 002227 233 EVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH- 311 (950)
Q Consensus 233 ~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~- 311 (950)
..+.++++|.|+.|.|..+.++..+-+|..||+++|+|..+..+..++++|.|+.|.|.+||+...+.||..++..|-.
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGER 428 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGER 428 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhh
Confidence 8889999999999999999999999999999999999999999899999999999999999999999999998877653
Q ss_pred CcccccCCCcCChhHHHHHHHHH
Q 002227 312 PAKLKVDGKEISTRELWERQLII 334 (950)
Q Consensus 312 L~~L~LdgN~Is~~e~~~~~~l~ 334 (950)
-..+.||+.+-+..+.....+..
T Consensus 429 aSE~~LD~~~~~~~ELDTV~Vl~ 451 (490)
T KOG1259|consen 429 ASEISLDNEPGNQQELDTVLVLS 451 (490)
T ss_pred hhheecCCCCcchhhhhHHHHHH
Confidence 56789999998888876655553
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=2.6e-16 Score=191.94 Aligned_cols=258 Identities=21% Similarity=0.199 Sum_probs=152.2
Q ss_pred cccccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCC
Q 002227 22 GPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (950)
Q Consensus 22 ~slL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~ 101 (950)
+.+-.+..+|++....|..||..+.. .|.. +++.+|+ +..+|. .+++|++|+|++|.|+.
T Consensus 197 ~Cl~~~~~~LdLs~~~LtsLP~~l~~--~L~~--------------L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~Lts 256 (788)
T PRK15387 197 ACLNNGNAVLNVGESGLTTLPDCLPA--HITT--------------LVIPDNN-LTSLPA---LPPELRTLEVSGNQLTS 256 (788)
T ss_pred HHhcCCCcEEEcCCCCCCcCCcchhc--CCCE--------------EEccCCc-CCCCCC---CCCCCcEEEecCCccCc
Confidence 34445677999999999998876532 2222 2233332 333443 24677777777777763
Q ss_pred CCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhc---------cccccccCCCCCCCccE
Q 002227 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSF 172 (950)
Q Consensus 102 ~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~---------~~i~~L~~L~~L~~L~~ 172 (950)
+|.. .++|+.|+|++|.|+. +|..+ ..|..+.+.+|.+..++.... +.+..++.+ ...|+.
T Consensus 257 -LP~l---p~sL~~L~Ls~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l--p~~L~~ 326 (788)
T PRK15387 257 -LPVL---PPGLLELSIFSNPLTH-LPALP---SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL--PSELCK 326 (788)
T ss_pred -ccCc---ccccceeeccCCchhh-hhhch---hhcCEEECcCCccccccccccccceeECCCCccccCCCC--cccccc
Confidence 3432 3566777777776654 33322 233345555665554432110 000000000 123444
Q ss_pred EEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc
Q 002227 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (950)
Q Consensus 173 L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp 252 (950)
|++++|.|+.+|.. ..+|+.|+|++|+|+.+|.+ ..+|+.|++++|.|..+|.. +.+|+.|+|++|.|+.+|
T Consensus 327 L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 327 LWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP 398 (788)
T ss_pred cccccCcccccccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEecCCcccCCC
Confidence 45555555544421 13566677777776666543 24566667777776666543 246778888888887776
Q ss_pred cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHH
Q 002227 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELW 328 (950)
Q Consensus 253 ~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~ 328 (950)
.+ .++|+.|+|++|.|+.+|.. +.+|+.|+|++|.|+..| ..+..++.++.++|++|+++.....
T Consensus 399 ~l--~s~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP----~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 399 VL--PSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Cc--ccCCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcccccC----hHHhhccCCCeEECCCCCCCchHHH
Confidence 43 35688888888888877631 246778888888887554 3356778899999999999865433
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=1.7e-17 Score=197.64 Aligned_cols=267 Identities=21% Similarity=0.190 Sum_probs=186.0
Q ss_pred CCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 002227 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (950)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~s 106 (950)
.++.++++.+.+..+|+.+..+.+|+.+. ..+|. +..+|..+....+|+.|.+..|.+. -+|..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~--------------~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALN--------------ANHNR-LVALPLRISRITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEec--------------ccchh-HHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence 34445555555555554444444433322 22332 3556666666666666666666665 45566
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHHh-hhh-hhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCc-cc
Q 002227 107 LLPFCRLKVLELRGCDLSTSAAKGLLE-LRH-TLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IM 183 (950)
Q Consensus 107 L~~L~nL~~LdLS~N~Ls~~lP~sL~~-L~~-Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~L 183 (950)
+.+++.|++|+|..|+|.. +|..+.. +.. +..+..+.|.+..++..- -..++.|+.|.+.+|.|+ ..
T Consensus 306 le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~---------e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYE---------ENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred ccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhcccccccccc---------chhhHHHHHHHHhcCcccccc
Confidence 6677777788887777765 4433322 222 333444444444443111 124567999999999999 34
Q ss_pred hhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCCCCC
Q 002227 184 DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLE 261 (950)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~ 261 (950)
-+.+.++++|+.|+|++|+|..+| .+.++..|+.|+||+|+++.++.....++.|++|...+|.|..+|.+..++.|+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLK 455 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcce
Confidence 457788999999999999999987 688999999999999999999987778899999999999999999999999999
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 262 ~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
.+||+.|.|+.+.- ......|+|++|+|+||..... ....|..++.+..+.++-++..
T Consensus 456 ~lDlS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~l~~---d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTL-PEALPSPNLKYLDLSGNTRLVF---DHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred EEecccchhhhhhh-hhhCCCcccceeeccCCccccc---chhhhHHhhhhhheecccCCCC
Confidence 99999999998653 3333348999999999996433 2455666777777777776443
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=2.6e-16 Score=192.42 Aligned_cols=260 Identities=19% Similarity=0.198 Sum_probs=196.3
Q ss_pred ccccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCC
Q 002227 23 PLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (950)
Q Consensus 23 slL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~ 102 (950)
.+..+...|++....+..+|..+. .. +..+++++|. +..+|..+. ++|+.|+|++|.++ .
T Consensus 175 Cl~~~~~~L~L~~~~LtsLP~~Ip--~~--------------L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~Lt-s 234 (754)
T PRK15370 175 CLKNNKTELRLKILGLTTIPACIP--EQ--------------ITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLT-S 234 (754)
T ss_pred hcccCceEEEeCCCCcCcCCcccc--cC--------------CcEEEecCCC-CCcCChhhc--cCCCEEECCCCccc-c
Confidence 445566789998888888885432 11 2235566664 456776553 58999999999998 4
Q ss_pred CCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCcc
Q 002227 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI 182 (950)
Q Consensus 103 iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~ 182 (950)
+|..+. ++|+.|+|++|.+.. +|..+. ..|..|.+++|.+..++..+ .++|+.|++++|+|+.
T Consensus 235 LP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l------------~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 235 IPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPENL------------PEELRYLSVYDNSIRT 297 (754)
T ss_pred CChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCcccccc------------CCCCcEEECCCCcccc
Confidence 566553 589999999999984 676664 36778888888887665422 1479999999999999
Q ss_pred chhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCccc-CCCCCCCC
Q 002227 183 MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRG-IENLKSLE 261 (950)
Q Consensus 183 LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~-L~~L~sL~ 261 (950)
+|..+. ++|+.|+|++|.++.+|.. ..++|+.|++++|.++.+|... +++|+.|+|++|+|+.+|. + .++|+
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~ 370 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTIT 370 (754)
T ss_pred Ccccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcC
Confidence 887553 4799999999999987632 2368999999999999987643 3689999999999998873 3 36899
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHHH
Q 002227 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (950)
Q Consensus 262 ~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~ 330 (950)
.|+|++|.|+.+|. .+. ..|+.|++++|.|...|......+..++.+..+.|.+|+++......-
T Consensus 371 ~LdLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 371 TLDVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred EEECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 99999999999884 232 369999999999987764333444456778899999999996554443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=6.7e-16 Score=188.40 Aligned_cols=236 Identities=21% Similarity=0.179 Sum_probs=174.8
Q ss_pred cccCCcEEEecCCCccchhhhhhhccccccccCCCCcccc-----ccccccCCCCccchhHHHHhcCCCCCcEEEccCCC
Q 002227 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYL-----RAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPP 98 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L-----~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~ 98 (950)
+...++.|.+..+.|..||..+..|+.|..- ++.+..+ .+..+++++|. +..+|.. +++|+.|+|++|.
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs--~N~LtsLP~lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPALPPELRTLEVS--GNQLTSLPVLPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCCCCCCcEEEec--CCccCcccCcccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc
Confidence 3446788889999999888655554443321 1222222 23346666664 5556653 3567788888888
Q ss_pred CCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCC
Q 002227 99 ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN 178 (950)
Q Consensus 99 L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N 178 (950)
++. +|. .+++|+.|+|++|.|++ +|... ..|..|.+.+|.+..++.+ ..+|+.|+|++|
T Consensus 294 Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~l-------------p~~Lq~LdLS~N 352 (788)
T PRK15387 294 LTS-LPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPTL-------------PSGLQELSVSDN 352 (788)
T ss_pred ccc-ccc---cccccceeECCCCcccc-CCCCc---ccccccccccCcccccccc-------------ccccceEecCCC
Confidence 874 444 24789999999999886 34322 2345566777776655431 147999999999
Q ss_pred cCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCC
Q 002227 179 RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLK 258 (950)
Q Consensus 179 ~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~ 258 (950)
+|+.+|.. .++|+.|++++|+|..+|.+ +.+|+.|+|++|.|+.+|... ++|+.|+|++|.|+.+|.+ ..
T Consensus 353 ~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l--~~ 422 (788)
T PRK15387 353 QLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPML--PS 422 (788)
T ss_pred ccCCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcc--hh
Confidence 99999863 45788999999999998754 368999999999999887643 6799999999999998854 35
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 259 sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
+|+.|+|++|+|+.+| ..+..+++|+.|+|++|+|++.
T Consensus 423 ~L~~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 423 GLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhhccCcccccC--hHHhhccCCCeEECCCCCCCch
Confidence 7899999999999998 5688999999999999999855
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=7.1e-17 Score=178.19 Aligned_cols=260 Identities=18% Similarity=0.160 Sum_probs=168.7
Q ss_pred cchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhcc-CCCccchhh
Q 002227 75 ALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH-NSTNALRHV 153 (950)
Q Consensus 75 ~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~-N~L~sL~~l 153 (950)
.+.++|..+ -+.-..|.|..|.|+.+.|.+|+.+++|+.|||++|+|+.+.|..|..|+.+.++.+.+ |.|+.++..
T Consensus 57 GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 344555432 12455666667777777777777777777777777777777777777777777776665 666666654
Q ss_pred hccccccccCCCCCCCccEEEccCCcCccch-hhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCC------
Q 002227 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN------ 224 (950)
Q Consensus 154 ~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~------ 224 (950)
.++. +..|+-|.+.-|++..++ +.|..+++|..|.+..|.+..+. .|..+..++.+.+..|.
T Consensus 135 ~F~g---------L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 135 AFGG---------LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred Hhhh---------HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 4442 234444444444444332 23444444444444444444432 23333344433333332
Q ss_pred ------------------------------cccc--------------------------c-cccccccceeEEEecCCC
Q 002227 225 ------------------------------LRSI--------------------------A-AFSEVSCHIVKLVLRNNA 247 (950)
Q Consensus 225 ------------------------------L~~L--------------------------~-~l~~~L~~L~~L~Ls~N~ 247 (950)
+..+ | ..+..+++|++|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 1111 1 013347899999999999
Q ss_pred CCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 248 Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
|+.+. +|..+..|+.|.|..|+|..+.. ..|.++..|+.|+|.+|+|++..+ ..|..+..|..+.|-+|++.+.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~---~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAP---GAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEec---ccccccceeeeeehccCcccCc
Confidence 99984 89999999999999999998876 678899999999999999998753 4577888899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCccccCC
Q 002227 326 ELWERQLIIARRQKRPAGFGFYSP 349 (950)
Q Consensus 326 e~~~~~~l~~~~~~~p~~~~~~~p 349 (950)
.+..+..-+.+......+..|..|
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred cchHHHHHHHhhCCCCCCCCCCCC
Confidence 877654443333333333344444
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-16 Score=190.68 Aligned_cols=254 Identities=22% Similarity=0.217 Sum_probs=161.8
Q ss_pred CcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccC
Q 002227 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (950)
Q Consensus 28 l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL 107 (950)
++.|++..+.+...|..+..+..|+.+... .| .+..+|....++.+|++|.|.+|.+. ..|..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s--------------~n-~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLS--------------RN-YIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccc--------------hh-hHhhCchhhhhhhcchhheeccchhh-cCchhH
Confidence 678899999988888888887777765431 11 23344444555555555555444443 445555
Q ss_pred CCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhh-----------------------------------------hccCC
Q 002227 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKI-----------------------------------------ICHNS 146 (950)
Q Consensus 108 ~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~Ll-----------------------------------------L~~N~ 146 (950)
..+.+|++|++++|.+.. +|..+..+..+.++. +++|.
T Consensus 111 ~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence 555555555555555532 343343333333333 33333
Q ss_pred Cccchhhhc------------------------------cccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEE
Q 002227 147 TNALRHVFA------------------------------SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETL 196 (950)
Q Consensus 147 L~sL~~l~~------------------------------~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~L 196 (950)
+..+.-... +.+..+...+.-.+|++++++.|+++.+|+.++.+.+|+.|
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 221100000 00001111123357888888888888888888888899999
Q ss_pred EccCCCCCCC-----------------------c-CcCCCCCCcEEECCCCCccccccccc-------------------
Q 002227 197 DLSRNKFAKV-----------------------D-NLRKCVNLKHLDLGFNNLRSIAAFSE------------------- 233 (950)
Q Consensus 197 dLS~N~Lt~l-----------------------~-~L~~L~~L~~LdLS~N~L~~L~~l~~------------------- 233 (950)
.+.+|+|..+ + .+.+++.|++|+|..|+|..+|..+.
T Consensus 270 ~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 8888877642 2 34457888899998888877654211
Q ss_pred -------cccceeEEEecCCCCCC--cccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 234 -------VSCHIVKLVLRNNALTT--LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 234 -------~L~~L~~L~Ls~N~Ls~--Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
.++.|+.|+|.+|.|+. +|.+.++++|++|+|++|+|..+|. ..+.+++.|+.|+|+||.++..+
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhhhh
Confidence 12457777888888877 5778888899999999999998886 67888888999999999887654
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=2.9e-14 Score=183.53 Aligned_cols=241 Identities=20% Similarity=0.160 Sum_probs=122.1
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccC-
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN- 145 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N- 145 (950)
.+++.++. +..+|..+..+++|+.|+|+++.....+|. ++.+++|++|+|++|.....+|..+..+++|..+.+.++
T Consensus 615 ~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 615 KLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 45555553 556666667777777777776654445553 667777777777777665667777777777777777664
Q ss_pred CCccchhhh---------ccccccccCCC-CCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCC-------c-
Q 002227 146 STNALRHVF---------ASRIVEIKDSP-QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKV-------D- 207 (950)
Q Consensus 146 ~L~sL~~l~---------~~~i~~L~~L~-~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l-------~- 207 (950)
.+..++... ...+..+..++ ...+|+.|++++|.+..+|..+ .+++|+.|.+.++....+ .
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccch
Confidence 333333211 00000000010 1235666666666666655433 234444444433211110 0
Q ss_pred -CcCCCCCCcEEECCCCC-ccccccccccccceeEEEecCC-CCCCcccCCCCCCCCEEEccCC-CCCCCchhhhcCCCC
Q 002227 208 -NLRKCVNLKHLDLGFNN-LRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYN-IISTFSELEFLASLP 283 (950)
Q Consensus 208 -~L~~L~~L~~LdLS~N~-L~~L~~l~~~L~~L~~L~Ls~N-~Ls~Lp~L~~L~sL~~LdLs~N-~Ls~l~~l~~L~~L~ 283 (950)
....+++|+.|+|++|. +..+|..+..+++|+.|+|++| .+..+|....+++|+.|+|++| .+..++. ..+
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----~~~ 846 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----IST 846 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----ccc
Confidence 01112355555665553 3334544455566666666654 3444553334555666666554 2333321 124
Q ss_pred CCcEEEecCCCCCCCcccchhHhhccCCCcccccCC
Q 002227 284 YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 284 ~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ldg 319 (950)
+|+.|+|++|.+...| ..+..++.|+.|.|++
T Consensus 847 nL~~L~Ls~n~i~~iP----~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 847 NISDLNLSRTGIEEVP----WWIEKFSNLSFLDMNG 878 (1153)
T ss_pred ccCEeECCCCCCccCh----HHHhcCCCCCEEECCC
Confidence 5555555555555433 1234455555555554
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=3.8e-16 Score=156.40 Aligned_cols=155 Identities=23% Similarity=0.323 Sum_probs=92.3
Q ss_pred CCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCC
Q 002227 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (950)
Q Consensus 85 ~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L 164 (950)
.+++.+.|.|++|+++ .+|..+..+.+|+.|++++|+|.. +|..+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~is-------------------------------- 76 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSIS-------------------------------- 76 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhh--------------------------------
Confidence 3445555555555555 344455555555555555555543 333332
Q ss_pred CCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCC--Cc-CcCCCCCCcEEECCCCCccccccccccccceeEE
Q 002227 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~--l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L 241 (950)
.+++|+.|+++-|++..+|..|+.+|.|+.|||.+|++.. +| .|..++.|+.|+|+.|.+.-+|+..+.+++|+.|
T Consensus 77 -sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 77 -SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQIL 155 (264)
T ss_pred -hchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEE
Confidence 2335666666667777777777777777777777766654 33 4555566666666666666666666666666666
Q ss_pred EecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCc
Q 002227 242 VLRNNALTTLR-GIENLKSLEGLDISYNIISTFS 274 (950)
Q Consensus 242 ~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~ 274 (950)
.+..|.+-.+| .++.+..|+.|.+.+|+++-+|
T Consensus 156 ~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 156 SLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred eeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 66666665555 5666666666666666666655
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.54 E-value=2.2e-15 Score=154.45 Aligned_cols=158 Identities=29% Similarity=0.420 Sum_probs=69.1
Q ss_pred cCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcC-CCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-c
Q 002227 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G 253 (950)
Q Consensus 176 s~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~-~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~ 253 (950)
..+.|..+| .+.+...+++|+|++|.|+.++.++ .+.+|+.|+|++|.|+.++.+. .++.|+.|+|++|+|+.+. .
T Consensus 5 t~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 5 TANMIEQIA-QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHH
T ss_pred ccccccccc-ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccc
Confidence 334444443 3344557888899999988888776 5788999999999998887644 4588999999999999885 4
Q ss_pred C-CCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHHHHH
Q 002227 254 I-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 332 (950)
Q Consensus 254 L-~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~~ 332 (950)
+ ..+++|+.|+|++|+|..+..+..+..+++|+.|+|.+||++..+.||..++..+|.| ..||+.+|+..|+..+..
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L--k~LD~~~V~~~ER~~A~~ 160 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL--KVLDGQDVTEEERQEAEK 160 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT---SEETTEETTS-B------
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh--heeCCEEccHHHhccccc
Confidence 4 3689999999999999999888889999999999999999999999999998888555 578999999999999988
Q ss_pred HHHhh
Q 002227 333 IIARR 337 (950)
Q Consensus 333 l~~~~ 337 (950)
+|..+
T Consensus 161 ~f~~~ 165 (175)
T PF14580_consen 161 LFKGK 165 (175)
T ss_dssp -----
T ss_pred ccccc
Confidence 87765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.3e-14 Score=177.60 Aligned_cols=221 Identities=18% Similarity=0.152 Sum_probs=158.9
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
.+++.++. +..+|..+ .++|+.|+|++|.|+ .+|..+. ++|++|+|++|.|+. +|..+. ..|..+.+.+|.
T Consensus 182 ~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILG-LTTIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEEeCCCC-cCcCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCc
Confidence 34455443 44456543 257888888888887 4555543 588888888888875 565543 356777788887
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCcc
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLR 226 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~ 226 (950)
+..++..+ ..+|+.|++++|+|+.+|..+. ++|+.|+|++|+|+.+|... .++|+.|+|++|.++
T Consensus 253 L~~LP~~l------------~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 253 ITELPERL------------PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL-PSGITHLNVQSNSLT 317 (754)
T ss_pred cCcCChhH------------hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc-hhhHHHHHhcCCccc
Confidence 77665432 1368899999999998887653 58999999999988876311 247888999999988
Q ss_pred ccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhH
Q 002227 227 SIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV 305 (950)
Q Consensus 227 ~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~ 305 (950)
.+|... .++|+.|++++|.|+.+| .+ .++|+.|+|++|+|+.+|. .+ .++|+.|+|++|.|+..+. ..
T Consensus 318 ~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~LP~---~l 386 (754)
T PRK15370 318 ALPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTNLPE---NL 386 (754)
T ss_pred cCCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCCCCH---hH
Confidence 877533 368999999999998887 33 3689999999999998773 22 3689999999999986652 11
Q ss_pred hhccCCCcccccCCCcCChh
Q 002227 306 FSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 306 ~~~L~~L~~L~LdgN~Is~~ 325 (950)
...|+.|++.+|.+...
T Consensus 387 ---~~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 387 ---PAALQIMQASRNNLVRL 403 (754)
T ss_pred ---HHHHHHHhhccCCcccC
Confidence 12477888899988743
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=8.5e-14 Score=179.29 Aligned_cols=285 Identities=17% Similarity=0.176 Sum_probs=160.0
Q ss_pred ccCCcEEEecCCCccchhhhhhhccccccccC-CCCcc--------ccccccccCCCCccchhHHHHhcCCCCCcEEEcc
Q 002227 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLA-GAPLD--------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~-~~~L~--------~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs 95 (950)
...+++|.+....+..+|..+. +.+|..|.. ...+. .-.+..++|+++..+..+|. +..+++|+.|+|.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 4456667776666666665541 223333222 11111 11233456666655666654 5666677777776
Q ss_pred CCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-Cccchhh---------hccccccccCCC
Q 002227 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHV---------FASRIVEIKDSP 165 (950)
Q Consensus 96 ~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~-L~sL~~l---------~~~~i~~L~~L~ 165 (950)
+|.....+|..+..+++|+.|+|++|.....+|..+ ++++|..+.+.+|. +..++.. ....+..++...
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 665555666666666777777776654444455443 45555555555442 1111110 011122222222
Q ss_pred CCCCccEEEccCCcCccch-------h-hcCCCCCCcEEEccCCC-CCCCc-CcCCCCCCcEEECCCC-Ccccccccccc
Q 002227 166 QWNRLSFVSCSCNRLVIMD-------E-SLQLLPAVETLDLSRNK-FAKVD-NLRKCVNLKHLDLGFN-NLRSIAAFSEV 234 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~Lt~LP-------~-sL~~L~~L~~LdLS~N~-Lt~l~-~L~~L~~L~~LdLS~N-~L~~L~~l~~~ 234 (950)
.+++|+.|.+.++....++ . ....+++|+.|+|++|. +..+| .+.++++|+.|+|++| .+..+|... .
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 4566777777654322221 1 22234678888888774 33454 5777888888888775 466666544 4
Q ss_pred ccceeEEEecCC-CCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecC-CCCCCCcccchhHhhccCCC
Q 002227 235 SCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG-NPLCCSRWYRAQVFSYFAHP 312 (950)
Q Consensus 235 L~~L~~L~Ls~N-~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~Lsg-NpLt~~~~~r~~~~~~L~~L 312 (950)
+++|+.|+|++| .+..+|.+ ..+|+.|+|++|.|+.+| .++..+++|+.|+|.+ |.+...+. .+..++.|
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~----~~~~L~~L 895 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSL----NISKLKHL 895 (1153)
T ss_pred ccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCCCcCccCc----ccccccCC
Confidence 577888888876 34444433 357888888888888776 4677788888888877 44544332 23345666
Q ss_pred cccccCCCc
Q 002227 313 AKLKVDGKE 321 (950)
Q Consensus 313 ~~L~LdgN~ 321 (950)
+.+.+.++.
T Consensus 896 ~~L~l~~C~ 904 (1153)
T PLN03210 896 ETVDFSDCG 904 (1153)
T ss_pred CeeecCCCc
Confidence 666666653
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2.5e-14 Score=157.05 Aligned_cols=155 Identities=26% Similarity=0.203 Sum_probs=106.6
Q ss_pred CCccEEEccCCcCc-----cchhhcCCCCCCcEEEccCCCCCCC------cCcCCCCCCcEEECCCCCcccc-----ccc
Q 002227 168 NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSI-----AAF 231 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~l------~~L~~L~~L~~LdLS~N~L~~L-----~~l 231 (950)
++|+.|++++|.++ .++..+..++.|+.|+|++|.++.- ..+..+++|+.|+|++|.+... ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 57888888888887 3445667777888999988888741 2355567889999998887643 223
Q ss_pred cccccceeEEEecCCCCCCc--ccC-----CCCCCCCEEEccCCCCCCCch---hhhcCCCCCCcEEEecCCCCCCCccc
Q 002227 232 SEVSCHIVKLVLRNNALTTL--RGI-----ENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWY 301 (950)
Q Consensus 232 ~~~L~~L~~L~Ls~N~Ls~L--p~L-----~~L~sL~~LdLs~N~Ls~l~~---l~~L~~L~~L~~L~LsgNpLt~~~~~ 301 (950)
...+++|++|++++|.++.. ..+ ...+.|+.|++++|.|+.... ...+..+++|+.|++++|.+......
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 34457899999999888752 111 134789999999998874221 13455668899999999998865322
Q ss_pred -chhHhhcc-CCCcccccCCCcC
Q 002227 302 -RAQVFSYF-AHPAKLKVDGKEI 322 (950)
Q Consensus 302 -r~~~~~~L-~~L~~L~LdgN~I 322 (950)
....+..+ +.++.+++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 12234444 5678888887764
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=3.4e-15 Score=165.04 Aligned_cols=245 Identities=22% Similarity=0.228 Sum_probs=177.1
Q ss_pred EEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCC
Q 002227 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLP 109 (950)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~ 109 (950)
.++-+..+|.++|..+.-= ...+.|..|.....-+..|+.+++|+.|||++|.|+.+-|.+|.+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~----------------tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPE----------------TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred eEEccCCCcccCcccCCCc----------------ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 4556666777777554311 112334445433333458999999999999999999999999999
Q ss_pred CCCCcEEEeeC-CCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchh-hc
Q 002227 110 FCRLKVLELRG-CDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SL 187 (950)
Q Consensus 110 L~nL~~LdLS~-N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~-sL 187 (950)
++.|..|-+.+ |+|+...-..|..|..+..+++.-|.+.-++.-.+. .+++|..|.+..|.+..++. .|
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~---------dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR---------DLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH---------Hhhhcchhcccchhhhhhccccc
Confidence 99988877766 889887677888898888888888877666543322 22344444444444444433 33
Q ss_pred CCCCCCcEEEccCCC------------------------------------C-------------------------CC-
Q 002227 188 QLLPAVETLDLSRNK------------------------------------F-------------------------AK- 205 (950)
Q Consensus 188 ~~L~~L~~LdLS~N~------------------------------------L-------------------------t~- 205 (950)
..+.+++.+.+..|. + ..
T Consensus 185 ~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~ 264 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSI 264 (498)
T ss_pred cchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCc
Confidence 334444444333332 1 00
Q ss_pred Cc--CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcC
Q 002227 206 VD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLA 280 (950)
Q Consensus 206 l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~ 280 (950)
.| .|..+++|+.|+|++|+|+.+.. .+..+..|+.|.|..|+|..+. .|.++..|+.|+|.+|+|+.+.+ ..|.
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~ 343 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQ 343 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-cccc
Confidence 11 36789999999999999999864 5556789999999999999985 78999999999999999999876 6788
Q ss_pred CCCCCcEEEecCCCCCCCcc
Q 002227 281 SLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 281 ~L~~L~~L~LsgNpLt~~~~ 300 (950)
.+..|..|+|-.||+.|.+.
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred ccceeeeeehccCcccCccc
Confidence 89999999999999999973
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=3.2e-14 Score=156.17 Aligned_cols=162 Identities=27% Similarity=0.296 Sum_probs=120.2
Q ss_pred CCccEEEccCCcCc-----cchhhcCCC-CCCcEEEccCCCCCCC------cCcCCCCCCcEEECCCCCccc-----ccc
Q 002227 168 NRLSFVSCSCNRLV-----IMDESLQLL-PAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRS-----IAA 230 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt-----~LP~sL~~L-~~L~~LdLS~N~Lt~l------~~L~~L~~L~~LdLS~N~L~~-----L~~ 230 (950)
++|+.|++++|.+. .+...+..+ ++|+.|+|++|.++.. ..+..++.|+.|+|++|.++. +..
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 46999999999987 334456677 8999999999999842 256677899999999999884 222
Q ss_pred ccccccceeEEEecCCCCCCc------ccCCCCCCCCEEEccCCCCCCCchhhhcC----CCCCCcEEEecCCCCCCCcc
Q 002227 231 FSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLA----SLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 231 l~~~L~~L~~L~Ls~N~Ls~L------p~L~~L~sL~~LdLs~N~Ls~l~~l~~L~----~L~~L~~L~LsgNpLt~~~~ 300 (950)
....+++|+.|+|++|.++.. ..+..+++|++|++++|.+++........ ..+.|+.|++.+|.++....
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 223346999999999999753 25677899999999999998643222112 24799999999999974321
Q ss_pred -cchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 301 -YRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 301 -~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
.-...+..++.++.+.+++|.++......
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 11234555678999999999999765333
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=3.8e-16 Score=156.41 Aligned_cols=183 Identities=19% Similarity=0.272 Sum_probs=154.8
Q ss_pred cCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchh
Q 002227 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (950)
Q Consensus 106 sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~ 185 (950)
.+.++.+++.|.|++|+++. +|..+..|. +|+.|++++|+|..+|.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~---------------------------------nlevln~~nnqie~lp~ 73 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPPNIAELK---------------------------------NLEVLNLSNNQIEELPT 73 (264)
T ss_pred cccchhhhhhhhcccCceee-cCCcHHHhh---------------------------------hhhhhhcccchhhhcCh
Confidence 35567889999999999976 555665543 78889999999999999
Q ss_pred hcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccc--cccccccccceeEEEecCCCCCCcc-cCCCCCCCC
Q 002227 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLE 261 (950)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~--L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~ 261 (950)
.+..++.|+.|+++-|++..+| .|+.++.|+.|||++|++.. +|..++.+..|+.|+|+.|.+..+| .++.+++|+
T Consensus 74 ~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 74 SISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQ 153 (264)
T ss_pred hhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhccee
Confidence 9999999999999999999887 89999999999999999974 7777788899999999999999986 899999999
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 262 ~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
.|.+..|.+-.+| ..++.++.|+.|.+.||.++-.|.- ...+.....-+.+.+..|+|...
T Consensus 154 il~lrdndll~lp--keig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 154 ILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred EEeeccCchhhCc--HHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCCh
Confidence 9999999999998 6789999999999999999876531 12233334456677888888653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2e-14 Score=160.86 Aligned_cols=310 Identities=19% Similarity=0.167 Sum_probs=216.6
Q ss_pred cccchhhHHHHHHHHhhcccccccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCc-----cch
Q 002227 3 IVTGDRYLEKLVKFVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHR-----ALE 77 (950)
Q Consensus 3 ~v~G~~yl~~li~~l~~~~~slL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~-----~l~ 77 (950)
+++|.+||.... +++++|++.-++ ......+..+-+++- +........ ...+.++ ++ -++
T Consensus 47 ~vdgk~YF~~q~----P~GGSFik~~kV-~~p~d~~~t~~ery~-----e~~s~~sd~----~~~~si~-nK~vE~iGfD 111 (505)
T KOG3207|consen 47 IVDGKRYFQTQH----PNGGSFIKPGKV-KFPTDLLRTFKERYY-----EKYSYSSDL----ESVLSIS-NKQVEFIGFD 111 (505)
T ss_pred eecceeeeeeec----CCCccccCCccC-CCCccHHHHHHHHHH-----HhhcCCcch----hhHhhhc-CceeEEecHH
Confidence 578999999877 899999887642 122222223222221 000000000 0011111 11 134
Q ss_pred hHHHHhcCCCCCcEEEccCCCCCCCCC--ccCCCCCCCcEEEeeCCCCCcc--chhhHHhhhhhhhhhhccCCCccchhh
Q 002227 78 QLRRILKLLTSLKVVSALPPPARDPTP--LSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHV 153 (950)
Q Consensus 78 ~Lp~~L~~L~~L~~LdLs~N~L~~~iP--~sL~~L~nL~~LdLS~N~Ls~~--lP~sL~~L~~Ll~LlL~~N~L~sL~~l 153 (950)
++..--.++.+|+.+.|.+..+. ..+ .....+++++.|||+.|-|... +..-...|++|..|.++.|.+......
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 45555667888999999776654 233 3566789999999999988753 334556788899999998865433221
Q ss_pred hccccccccCCCCCCCccEEEccCCcCc--cchhhcCCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCccccc
Q 002227 154 FASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIA 229 (950)
Q Consensus 154 ~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~ 229 (950)
. .. ..++.|+.|.|+.|+|+ .+...+..+|+|+.|+|..|....+ ....-+..|+.|+|++|++-..+
T Consensus 191 ~---~~-----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 191 N---TT-----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred c---ch-----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 1 00 14578999999999998 5555677899999999999963333 24455678999999999998877
Q ss_pred --cccccccceeEEEecCCCCCCcc--c------CCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 230 --AFSEVSCHIVKLVLRNNALTTLR--G------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 230 --~l~~~L~~L~~L~Ls~N~Ls~Lp--~------L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
.....++.|..|+++.+.|..+. . ...+++|+.|++..|+|..|+.+..+..+++|+.|.+.+|++....
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 34556899999999999998862 2 3568999999999999999999888899999999999999998764
Q ss_pred ccchhHhhccCCCcccccCCCcCChhHHHHHHHHHHhh
Q 002227 300 WYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (950)
Q Consensus 300 ~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~~l~~~~ 337 (950)
. ....+......+...|++..+.+.++..+++.|.+.
T Consensus 343 ~-~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 343 D-TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred c-ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 3 222233344567778899999999998888876665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=9.6e-13 Score=151.12 Aligned_cols=176 Identities=24% Similarity=0.282 Sum_probs=153.2
Q ss_pred CCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcC
Q 002227 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (950)
Q Consensus 109 ~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~ 188 (950)
.+.--...||+.|++.. +|..+..+..|..+++..|.+..++..+ .++..|++|+|+.|+++.+|..++
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i----------~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAI----------CNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhh----------hhhhHHHHhhhccchhhcCChhhh
Confidence 45666778999999864 8888888888888888888877776533 356789999999999999999999
Q ss_pred CCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEcc
Q 002227 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (950)
Q Consensus 189 ~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs 266 (950)
.|| |+.|.+++|+++.+| .++.+..|..|+.+.|.|..++.....+.+|+.|.+..|++..+| .+..| .|..||++
T Consensus 142 ~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecc
Confidence 887 899999999999986 788889999999999999999988888899999999999999986 66655 49999999
Q ss_pred CCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 267 ~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
+|+|..+| ..|.+|..|++|-|.+||+...+
T Consensus 220 cNkis~iP--v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 220 CNKISYLP--VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred cCceeecc--hhhhhhhhheeeeeccCCCCCCh
Confidence 99999998 56899999999999999998764
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.8e-11 Score=124.38 Aligned_cols=134 Identities=26% Similarity=0.371 Sum_probs=53.3
Q ss_pred EccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchh
Q 002227 197 DLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 276 (950)
Q Consensus 197 dLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l 276 (950)
.|..+.|..++.+.+...++.|+|.+|.|+.+..+...+.+|+.|+|++|.|+.++++..++.|+.|+|++|+|+.+..
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 3556777778888888899999999999999987665678999999999999999999999999999999999999863
Q ss_pred hhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHHHHHH
Q 002227 277 EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (950)
Q Consensus 277 ~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~~l 333 (950)
.....+|+|+.|+|++|.|.....+ ..+..++.|+.|.|.+||++....+...++
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi 136 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVI 136 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHH
Confidence 2224689999999999999876543 446789999999999999997776655444
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.6e-11 Score=129.58 Aligned_cols=221 Identities=20% Similarity=0.212 Sum_probs=164.4
Q ss_pred HhcCCCCCcEEEccCCCCCC--CCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccc
Q 002227 82 ILKLLTSLKVVSALPPPARD--PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIV 159 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~--~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~ 159 (950)
.-..++.++.|||.+|.|++ .+...+.+||.|++|+|+.|.+... +..++
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp------------------------ 117 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLP------------------------ 117 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCc------------------------
Confidence 33457888999999999865 4555667889999999999988752 22221
Q ss_pred cccCCCCCCCccEEEccCCcCc--cchhhcCCCCCCcEEEccCCCCCCCc----CcCCC-CCCcEEECCCCCcccc---c
Q 002227 160 EIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD----NLRKC-VNLKHLDLGFNNLRSI---A 229 (950)
Q Consensus 160 ~L~~L~~L~~L~~L~Ls~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~----~L~~L-~~L~~LdLS~N~L~~L---~ 229 (950)
....+|+.|.|.+..|. .....+..+|.++.|.+|.|.+..+. ..... +.+++|.+..|..... -
T Consensus 118 -----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 118 -----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred -----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 13458889999888776 55567788999999999999776541 22222 4667777777754432 2
Q ss_pred cccccccceeEEEecCCCCCCcc---cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC--cccch-
Q 002227 230 AFSEVSCHIVKLVLRNNALTTLR---GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS--RWYRA- 303 (950)
Q Consensus 230 ~l~~~L~~L~~L~Ls~N~Ls~Lp---~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~--~~~r~- 303 (950)
.....+|++..+.+..|.|+... ....+|.+-.|+|+.|+|.+|..++.+..++.|..|.+.+||+... +..|.
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ 272 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRF 272 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceE
Confidence 33445789999999999998863 6778888999999999999999999999999999999999999865 22221
Q ss_pred hHhhccCCCcccccCCCcCChhHHHHHHHHHHhh
Q 002227 304 QVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (950)
Q Consensus 304 ~~~~~L~~L~~L~LdgN~Is~~e~~~~~~l~~~~ 337 (950)
-.++.+ ...-.|+|..|+..++...+..|.+.
T Consensus 273 llIaRL--~~v~vLNGskIss~er~dSEr~fVRy 304 (418)
T KOG2982|consen 273 LLIARL--TKVQVLNGSKISSRERKDSERRFVRY 304 (418)
T ss_pred EEEeec--cceEEecCcccchhhhhhhHHHHHHH
Confidence 223334 44456789999999999888887775
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=2.8e-12 Score=147.32 Aligned_cols=170 Identities=23% Similarity=0.335 Sum_probs=115.3
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
..|++.|+ +.++|..+..+-.|..|.|..|.|. .+|..+.++..|++|||+.|+++. +|..++.|+
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp----------- 144 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP----------- 144 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-----------
Confidence 45566554 3446666666666666666666665 566666667777777777776643 555555543
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCc
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNL 225 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L 225 (950)
|+.|.+++|+++.+|+.++.++.|..|+.+.|.|..++ .++.+.+|+.|++..|++
T Consensus 145 -----------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 145 -----------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred -----------------------ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh
Confidence 66777777777777777777777777777777777764 677777777777777777
Q ss_pred cccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCc
Q 002227 226 RSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFS 274 (950)
Q Consensus 226 ~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~ 274 (950)
..+|.....+ .|..||++.|+|..|| .|..|..|++|-|.+|.++.-|
T Consensus 202 ~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 202 EDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 7776544433 4777777777777777 6777777777777777777643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=2.5e-10 Score=130.46 Aligned_cols=193 Identities=28% Similarity=0.280 Sum_probs=110.5
Q ss_pred EEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhh-hhhhhhhccCCCccchhhhccccccccCCCCCCC
Q 002227 91 VVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELR-HTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (950)
Q Consensus 91 ~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~-~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~ 169 (950)
.|.+..|.+.. .+..+..++.++.|++.+|.++. ++.....+. ++..+.+..|.+..++. .+..+++
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~----------~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPS----------PLRNLPN 164 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhhh----------hhhcccc
Confidence 34554544421 12233344556666666666654 333333332 45555555555444421 1124556
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCc-CCCCCCcEEECCCCCccccccccccccceeEEEecCCCC
Q 002227 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL-RKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (950)
Q Consensus 170 L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L-~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~L 248 (950)
|+.|+++.|++..+|.....+++|+.|++++|+++.++.. ..+..|+.|.+++|.+..++.....+.++..|.+.+|++
T Consensus 165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 6677777777776666555666677777777777766643 344456777777775444444444456666666667766
Q ss_pred CCc-ccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 249 TTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 249 s~L-p~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
..+ ..+..+++|+.|++++|.|+.++. ++.+.+|+.|++++|.+...
T Consensus 245 ~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 245 EDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred eeccchhccccccceecccccccccccc---ccccCccCEEeccCcccccc
Confidence 663 355666667777777777776653 56666777777777766543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3e-10 Score=129.80 Aligned_cols=182 Identities=24% Similarity=0.269 Sum_probs=156.2
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCC-CCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccc
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFC-RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~-nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~ 160 (950)
.+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+.. +|..+..++.|..+.+..|++..++....
T Consensus 111 ~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----- 183 (394)
T COG4886 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLS----- 183 (394)
T ss_pred hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhh-----
Confidence 4556689999999999998 5666677774 99999999999975 66788999999999999998887776431
Q ss_pred ccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCC-CCCCcCcCCCCCCcEEECCCCCcccccccccccccee
Q 002227 161 IKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (950)
Q Consensus 161 L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~-Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~ 239 (950)
..+.|+.|++++|++..+|..+..+..|++|.+++|. +..+..+..+.++..|.+.+|++..++.....++.|+
T Consensus 184 -----~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 184 -----NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258 (394)
T ss_pred -----hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccc
Confidence 4578999999999999999877777789999999995 5555678889999999999999988766667778899
Q ss_pred EEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCch
Q 002227 240 KLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSE 275 (950)
Q Consensus 240 ~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~ 275 (950)
.|++++|.++.++.+..+.+|+.|++++|.+...++
T Consensus 259 ~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 259 TLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eeccccccccccccccccCccCEEeccCccccccch
Confidence 999999999999889999999999999999988764
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-10 Score=134.69 Aligned_cols=228 Identities=27% Similarity=0.327 Sum_probs=165.2
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccc
Q 002227 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (950)
Q Consensus 81 ~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~ 160 (950)
..+..+.+|..|++.+|.|.... ..+..+++|++|+|++|.|+.. .++..+..|..|.+.+|.+..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-------- 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-------- 157 (414)
T ss_pred cccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC--------
Confidence 34677888888888888887433 2267788888888888888763 356666677888888887665544
Q ss_pred ccCCCCCCCccEEEccCCcCccchhh-cCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCcccccccccccc--c
Q 002227 161 IKDSPQWNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSC--H 237 (950)
Q Consensus 161 L~~L~~L~~L~~L~Ls~N~Lt~LP~s-L~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~--~ 237 (950)
+..++.|+.+++++|++..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.+.+.... . .
T Consensus 158 ---~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~-~~~~ 233 (414)
T KOG0531|consen 158 ---LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNEL-VMLH 233 (414)
T ss_pred ---CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccc-hhHH
Confidence 23467888888888888877543 577788888888888888877777777777778888888877654432 2 3
Q ss_pred eeEEEecCCCCCCc-ccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc-ccchhHhhccCCCccc
Q 002227 238 IVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKL 315 (950)
Q Consensus 238 L~~L~Ls~N~Ls~L-p~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~-~~r~~~~~~L~~L~~L 315 (950)
|+.+++++|++..+ ..+..+..+..|++..|++..+.. +...+.+..+++..|++.... ..........+.+..+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 88888899988887 678888888888888888887653 556677788888888876331 1111114456677778
Q ss_pred ccCCCcCChhH
Q 002227 316 KVDGKEISTRE 326 (950)
Q Consensus 316 ~LdgN~Is~~e 326 (950)
.+.+|++....
T Consensus 311 ~~~~~~~~~~~ 321 (414)
T KOG0531|consen 311 TLELNPIRKIS 321 (414)
T ss_pred ccccCcccccc
Confidence 88888876644
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.9e-10 Score=123.93 Aligned_cols=135 Identities=22% Similarity=0.241 Sum_probs=112.2
Q ss_pred CCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEcc
Q 002227 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (950)
Q Consensus 189 ~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs 266 (950)
.+..|++||||+|.|+.++ ...-+|.++.|++++|.|..+..+ ..+++|+.|+|++|.++.+. +-..+.+++.|.|+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3457899999999999986 566679999999999999998874 45689999999999999986 44678899999999
Q ss_pred CCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 267 ~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
.|.|.++.. +..+-+|..|++.+|+|...... ..+..+|+|+.+.|-+||+....-+.
T Consensus 361 ~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 361 QNKIETLSG---LRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhhHhhhhh---hHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCccccchHH
Confidence 999988764 67888899999999999876543 34778999999999999998654333
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=1.5e-09 Score=119.73 Aligned_cols=238 Identities=20% Similarity=0.234 Sum_probs=119.9
Q ss_pred cccCCCCccch----hHHHHhcCCCCCcEEEccCC---CCCCCCCc-------cCCCCCCCcEEEeeCCCCCccchhhHH
Q 002227 67 VSDLGDHRALE----QLRRILKLLTSLKVVSALPP---PARDPTPL-------SLLPFCRLKVLELRGCDLSTSAAKGLL 132 (950)
Q Consensus 67 vLdLs~n~~l~----~Lp~~L~~L~~L~~LdLs~N---~L~~~iP~-------sL~~L~nL~~LdLS~N~Ls~~lP~sL~ 132 (950)
.++|++|.+-. .+...+.+.+.|+..++++- ++...+|. ++...++|++||||.|-|....+..|.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 35666665433 34556777788888887542 22233444 344557888888888888755555444
Q ss_pred hh----hhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-
Q 002227 133 EL----RHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD- 207 (950)
Q Consensus 133 ~L----~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~- 207 (950)
.+ ..|.+|.+++|.+.....-..++ .|..|. .....+.-+.|+++...+|++..-+
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-----------al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGR-----------ALFELA--------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHH-----------HHHHHH--------HHhccCCCcceEEEEeeccccccccH
Confidence 33 34444444444432221111000 000000 0011223344555555555554321
Q ss_pred -----CcCCCCCCcEEECCCCCccc--c---ccccccccceeEEEecCCCCCCc------ccCCCCCCCCEEEccCCCCC
Q 002227 208 -----NLRKCVNLKHLDLGFNNLRS--I---AAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIIS 271 (950)
Q Consensus 208 -----~L~~L~~L~~LdLS~N~L~~--L---~~l~~~L~~L~~L~Ls~N~Ls~L------p~L~~L~sL~~LdLs~N~Ls 271 (950)
.|...+.|+.+.+..|.|.. + ...+..+++|+.|+|..|-++.- ..+..+++|+.|+++++.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 34444555555555555442 1 11223345566666666655441 24555666777777777666
Q ss_pred CCchhhh----cCCCCCCcEEEecCCCCCCCccc-chhHhhccCCCcccccCCCcCC
Q 002227 272 TFSELEF----LASLPYLLNLWLEGNPLCCSRWY-RAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 272 ~l~~l~~----L~~L~~L~~L~LsgNpLt~~~~~-r~~~~~~L~~L~~L~LdgN~Is 323 (950)
.-..... -...|+|+.|.|.+|.|+..... ....+...+.|..|.|++|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5333211 12356777777777777644211 1122334566777777777774
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=4.6e-10 Score=129.91 Aligned_cols=218 Identities=25% Similarity=0.258 Sum_probs=137.1
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccC
Q 002227 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (950)
Q Consensus 84 ~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~ 163 (950)
..+..++.+.+..|.|.. +-..+..+++|+.|+|.+|.|..+. ..+..+.+|..+.+++|.|..+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~l---------- 136 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEGL---------- 136 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccch----------
Confidence 346667777788888764 3345778899999999999997632 2256666667777777765554432
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcC--cCCCCCCcEEECCCCCccccccccccccceeEE
Q 002227 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN--LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (950)
Q Consensus 164 L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~--L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L 241 (950)
..++.|+.|++.+|.|..+ ..+..++.|+.+++++|++..++. +..+..|+.+++.+|.+..+..... +..+..+
T Consensus 137 -~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~-~~~l~~~ 213 (414)
T KOG0531|consen 137 -STLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDL-LKKLVLL 213 (414)
T ss_pred -hhccchhhheeccCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHH-HHHHHHh
Confidence 3445577777777777766 344556677777777777776665 4666777777777777666554322 2344445
Q ss_pred EecCCCCCCcccCCCCCC--CCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCC
Q 002227 242 VLRNNALTTLRGIENLKS--LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 242 ~Ls~N~Ls~Lp~L~~L~s--L~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ldg 319 (950)
++..|.++.+.++..+.. |+.+++++|++...+ ..+..++++..|++..|.+..... +.....+..+.+..
T Consensus 214 ~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~-----~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 214 SLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEG-----LERLPKLSELWLND 286 (414)
T ss_pred hcccccceeccCcccchhHHHHHHhcccCcccccc--ccccccccccccchhhcccccccc-----ccccchHHHhccCc
Confidence 667777766655555554 677777777777653 235566667777777776654431 22333445555555
Q ss_pred CcCC
Q 002227 320 KEIS 323 (950)
Q Consensus 320 N~Is 323 (950)
|++.
T Consensus 287 ~~~~ 290 (414)
T KOG0531|consen 287 NKLA 290 (414)
T ss_pred chhc
Confidence 5554
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.7e-10 Score=127.18 Aligned_cols=211 Identities=19% Similarity=0.160 Sum_probs=154.4
Q ss_pred CCCCCCcEEEeeCCCCCccch-hhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchhh
Q 002227 108 LPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES 186 (950)
Q Consensus 108 ~~L~nL~~LdLS~N~Ls~~lP-~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~s 186 (950)
.++.+|+.+.|.++.+..... .....+++...|+++.|-+.....+. .-...+++|+.|+|+.|++...-.+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-------~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-------KIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH-------HHHHhcccchhcccccccccCCccc
Confidence 467899999999998864221 36677888889999888544433321 1124778999999999998743322
Q ss_pred --cCCCCCCcEEEccCCCCCCCc---CcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCcc---cCCCC
Q 002227 187 --LQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR---GIENL 257 (950)
Q Consensus 187 --L~~L~~L~~LdLS~N~Lt~l~---~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp---~L~~L 257 (950)
-..++.|+.|.|+.|.|+.-+ .+..+|+|+.|+|..|....+. .....+..|+.|+|++|.+-..+ ....+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 235778999999999998522 4567799999999999633322 22334578999999999987764 67789
Q ss_pred CCCCEEEccCCCCCCCchhhh-----cCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHH
Q 002227 258 KSLEGLDISYNIISTFSELEF-----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (950)
Q Consensus 258 ~sL~~LdLs~N~Ls~l~~l~~-----L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~ 327 (950)
+.|..|+++.+.|.++..++. ...+++|+.|++..|++...+.+ ..+..+++++.+...+|.++.++-
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl--~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL--NHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc--chhhccchhhhhhccccccccccc
Confidence 999999999999988754333 45789999999999999755432 234567788888899999987654
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=2.8e-09 Score=117.60 Aligned_cols=244 Identities=25% Similarity=0.252 Sum_probs=166.7
Q ss_pred ccCCcEEEecCCCccc-----hhhhhhhccccccccCCCCccccccccccCCCCccchhHH-------HHhcCCCCCcEE
Q 002227 25 IEGSIVLKLNPAGLHY-----VQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR-------RILKLLTSLKVV 92 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~-----Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp-------~~L~~L~~L~~L 92 (950)
...+..|+|..+.+.. |...+.+.++|+.... .|+---+...++| +.+..+++|++|
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~-----------sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNL-----------SDMFTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeeh-----------HhhhcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 3456778888887653 3444444443333211 1222223333444 456788899999
Q ss_pred EccCCCCCCCCCccC----CCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 002227 93 SALPPPARDPTPLSL----LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (950)
Q Consensus 93 dLs~N~L~~~iP~sL----~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~ 168 (950)
+|++|.+....+..| .....|++|.|.+|.+....-..++. .|.++. .+. ..+.-+
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k----------------k~~~~~ 157 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK----------------KAASKP 157 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh----------------ccCCCc
Confidence 999999976655544 45689999999999986432222222 111111 110 112346
Q ss_pred CccEEEccCCcCcc-----chhhcCCCCCCcEEEccCCCCCCC------cCcCCCCCCcEEECCCCCcccc-----cccc
Q 002227 169 RLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSI-----AAFS 232 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~-----LP~sL~~L~~L~~LdLS~N~Lt~l------~~L~~L~~L~~LdLS~N~L~~L-----~~l~ 232 (950)
.|+++.+.+|++.. +...|...+.|+.+.++.|.|..- ..|..+++|++|||..|-++.- ....
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 89999999999974 345678889999999999998752 3688999999999999998852 3344
Q ss_pred ccccceeEEEecCCCCCCc------ccC-CCCCCCCEEEccCCCCCCCchh---hhcCCCCCCcEEEecCCCCCCCc
Q 002227 233 EVSCHIVKLVLRNNALTTL------RGI-ENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 233 ~~L~~L~~L~Ls~N~Ls~L------p~L-~~L~sL~~LdLs~N~Ls~l~~l---~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
..+++|+.|++++|.++.= ..+ ...|+|+.|.|.+|.|+.-... ..+...|.|..|+|++|.+...+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~d 314 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKD 314 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccc
Confidence 5568999999999999772 222 3479999999999999863221 34566899999999999995433
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.65 E-value=2.7e-08 Score=102.98 Aligned_cols=138 Identities=28% Similarity=0.366 Sum_probs=102.4
Q ss_pred cEEEccCCCCCCCcCcCCC-CCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-cCC-CCCCCCEEEccCCCC
Q 002227 194 ETLDLSRNKFAKVDNLRKC-VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIE-NLKSLEGLDISYNII 270 (950)
Q Consensus 194 ~~LdLS~N~Lt~l~~L~~L-~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~-~L~sL~~LdLs~N~L 270 (950)
+.++|.+.++..+..++.. .+...+||++|.|..++.+. .++.|.+|.|.+|+|+.+. .+. .+++|..|.|.+|.|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 4555555555554433332 35566777777776665543 3467777777777777763 333 357788999999999
Q ss_pred CCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHHHHHHH
Q 002227 271 STFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (950)
Q Consensus 271 s~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~~l~ 334 (950)
..+.++..+..+|+|+.|.+-+||++....||..++-.++.++ .||...|+..++..|+.+|
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~--~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR--TLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce--EeehhhhhHHHHHHHHHHh
Confidence 9888888899999999999999999999999988766665554 5788899999999999887
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=6.9e-09 Score=122.31 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=107.3
Q ss_pred CCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCC--CCCCCCEEEccCC
Q 002227 192 AVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE--NLKSLEGLDISYN 268 (950)
Q Consensus 192 ~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~--~L~sL~~LdLs~N 268 (950)
.|.+.+.++|.+..++ .+.-++.|+.|+|++|+++.+.. ...++.|++|||+.|.|+.+|.+. .+. |..|.|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN-LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH-HHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4677778888888775 67778899999999999999874 455689999999999999988543 444 999999999
Q ss_pred CCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHHHHH
Q 002227 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQL 332 (950)
Q Consensus 269 ~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~~ 332 (950)
.++.+.. +.+|.+|+.|+++.|-|.....+ ..+..+..|..|+|.|||+-+.....+..
T Consensus 243 ~l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c~p~hRaat 301 (1096)
T KOG1859|consen 243 ALTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCCAPWHRAAT 301 (1096)
T ss_pred HHHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCccccCHHHHHHH
Confidence 9998765 66888999999999999877543 23445667899999999998876555443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=6.3e-07 Score=109.30 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=88.1
Q ss_pred CCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCC
Q 002227 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (950)
Q Consensus 88 ~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L 167 (950)
.++.|+|++|.+.+.+|..|..+++|+.|+|++|.|.+.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l--------------------------------- 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--------------------------------- 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC---------------------------------
Confidence 48899999999999999999999999999999999998888766544
Q ss_pred CCccEEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCC-Cc-CcCC-CCCCcEEECCCCC
Q 002227 168 NRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRK-CVNLKHLDLGFNN 224 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~-L~~L~~LdLS~N~ 224 (950)
++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.+++ +| .+.. +.++..+++.+|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 47889999999998 788899999999999999999885 44 4443 2466788888885
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.1e-06 Score=107.04 Aligned_cols=104 Identities=25% Similarity=0.263 Sum_probs=86.0
Q ss_pred CCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCC
Q 002227 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLL 190 (950)
Q Consensus 112 nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L 190 (950)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.|. .+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L---------------------------------~~L~~L~Ls~N~l~g~iP~~~~~l 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL---------------------------------RHLQSINLSGNSIRGNIPPSLGSI 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC---------------------------------CCCCEEECCCCcccCcCChHHhCC
Confidence 48899999999998888766544 47899999999998 889899999
Q ss_pred CCCcEEEccCCCCCC-Cc-CcCCCCCCcEEECCCCCccc-cccccc-cccceeEEEecCCCC
Q 002227 191 PAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSE-VSCHIVKLVLRNNAL 248 (950)
Q Consensus 191 ~~L~~LdLS~N~Lt~-l~-~L~~L~~L~~LdLS~N~L~~-L~~l~~-~L~~L~~L~Ls~N~L 248 (950)
++|+.|+|++|++++ +| .+..+++|+.|+|++|.+.+ +|.... .+.++..+++.+|..
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999999986 44 68999999999999999985 454332 234667888888853
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=6.2e-07 Score=75.93 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=39.1
Q ss_pred cceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCC
Q 002227 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (950)
Q Consensus 236 ~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpL 295 (950)
|+|+.|+|++|+|+.++ .|..+++|++|++++|.|+.+++ ..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 35666666666666664 56666777777777777766654 5566777777777777654
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.4e-07 Score=101.52 Aligned_cols=117 Identities=30% Similarity=0.424 Sum_probs=100.2
Q ss_pred CCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEec
Q 002227 212 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (950)
Q Consensus 212 L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~Ls 291 (950)
+.+.+.|++-++.|..|.-. ..++.|+.|.|+-|+|+.+..+..|++|+.|+|..|.|.++..+..+.++|+|+.|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45667788888888876543 34588999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCC--cccchhHhhccCCCcccccCCCcCChhHHHHHH
Q 002227 292 GNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (950)
Q Consensus 292 gNpLt~~--~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~ 331 (950)
.||.+.. ..||..++..+|+|+ .||+-+++..+...+.
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLk--KLDnv~VteeEle~AL 136 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLK--KLDNVPVTEEELEEAL 136 (388)
T ss_pred cCCcccccchhHHHHHHHHcccch--hccCccccHHHHHHHH
Confidence 9998765 688988988887665 6789999998877653
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=1.7e-06 Score=73.28 Aligned_cols=57 Identities=39% Similarity=0.506 Sum_probs=38.3
Q ss_pred CccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCc
Q 002227 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L 225 (950)
+|+.|++++|+|+.+|. .|..+++|++|++++|.|+.++ .|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 56677777777776664 5666777777777777776653 566666777777766654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.4e-06 Score=93.02 Aligned_cols=204 Identities=23% Similarity=0.228 Sum_probs=116.4
Q ss_pred cccccCCCC--ccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCcc-chhhHHhhhhhhhhh
Q 002227 65 AYVSDLGDH--RALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKI 141 (950)
Q Consensus 65 l~vLdLs~n--~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~-lP~sL~~L~~Ll~Ll 141 (950)
+..+||..| ..+.++...+.+||+|+.|+|+.|.+...+...-..+.+|++|-|.+..+.-. .-..+..++.+.++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 345778777 45788899999999999999999998754432225778999999999888642 234556677777777
Q ss_pred hccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchhh---cCCCCCCcEEEccCCCCCCCcCcCCCCCCcEE
Q 002227 142 ICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES---LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHL 218 (950)
Q Consensus 142 L~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~s---L~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~L 218 (950)
++.|+ ++.+++..|.+..+... +..++.+..++++-|++.. -++++..+
T Consensus 153 mS~N~-----------------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-----~Fpnv~sv 204 (418)
T KOG2982|consen 153 MSDNS-----------------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-----IFPNVNSV 204 (418)
T ss_pred hccch-----------------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-----hcccchhe
Confidence 77773 33333333333322111 1111222222222222221 12455555
Q ss_pred ECCCCCcccccc--ccccccceeEEEecCCCCCCc---ccCCCCCCCCEEEccCCCCCCC-----chhhhcCCCCCCcEE
Q 002227 219 DLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTF-----SELEFLASLPYLLNL 288 (950)
Q Consensus 219 dLS~N~L~~L~~--l~~~L~~L~~L~Ls~N~Ls~L---p~L~~L~sL~~LdLs~N~Ls~l-----~~l~~L~~L~~L~~L 288 (950)
-+..|.|..... .+..+|.+-.|+|+.|+|... ..+..++.|.-|.+++|.|.+- +..-.++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 555555554332 222334555666666666553 3556666677777776666541 111235677777777
Q ss_pred EecCCCCCCC
Q 002227 289 WLEGNPLCCS 298 (950)
Q Consensus 289 ~LsgNpLt~~ 298 (950)
+ |-.|+..
T Consensus 285 N--GskIss~ 292 (418)
T KOG2982|consen 285 N--GSKISSR 292 (418)
T ss_pred c--Ccccchh
Confidence 5 3366543
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=5.3e-06 Score=86.36 Aligned_cols=123 Identities=23% Similarity=0.266 Sum_probs=97.6
Q ss_pred cEEEccCCcCccchhhcC-CCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccc-cccccceeEEEecCCCC
Q 002227 171 SFVSCSCNRLVIMDESLQ-LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNAL 248 (950)
Q Consensus 171 ~~L~Ls~N~Lt~LP~sL~-~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~N~L 248 (950)
+.++|.+.++..+.. ++ .+.....+||++|.+..++.|..++.|.+|.|++|+|+.|.+. ...+++|..|.|.+|.|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 455666666554422 22 2346789999999999999999999999999999999998764 44678999999999998
Q ss_pred CCc---ccCCCCCCCCEEEccCCCCCCCchh--hhcCCCCCCcEEEecCCC
Q 002227 249 TTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNP 294 (950)
Q Consensus 249 s~L---p~L~~L~sL~~LdLs~N~Ls~l~~l--~~L~~L~~L~~L~LsgNp 294 (950)
..+ ..+..||.|+.|.+-+|.++..... -.+..+|+|+.|++.+=.
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 875 4788899999999999999875432 346789999999986543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=5.5e-06 Score=89.35 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=47.5
Q ss_pred cceeEEEecCCCCCCc------ccCCCCCCCCEEEccCCCCCCCchhhhc-----CCCCCCcEEEecCCCCCCCc----c
Q 002227 236 CHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFL-----ASLPYLLNLWLEGNPLCCSR----W 300 (950)
Q Consensus 236 ~~L~~L~Ls~N~Ls~L------p~L~~L~sL~~LdLs~N~Ls~l~~l~~L-----~~L~~L~~L~LsgNpLt~~~----~ 300 (950)
.+|+.|+|..|-++.. ..+..++.|+.|.+.+|.++.-.....+ ...|+|..|-+..|-+.... .
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~ 293 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS 293 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec
Confidence 4555555555554432 1344455566666666666543321211 13466666666666554331 1
Q ss_pred cchhHhhccCCCcccccCCCcCChhH
Q 002227 301 YRAQVFSYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 301 ~r~~~~~~L~~L~~L~LdgN~Is~~e 326 (950)
+....-..++.|.-+.++||.+....
T Consensus 294 l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 294 LNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhhhhhcccHHHHHHHHccCcchhHH
Confidence 22222234556667788888887654
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=8.4e-06 Score=102.59 Aligned_cols=206 Identities=16% Similarity=0.183 Sum_probs=115.5
Q ss_pred HHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC-ccchhhhcccc
Q 002227 80 RRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST-NALRHVFASRI 158 (950)
Q Consensus 80 p~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L-~sL~~l~~~~i 158 (950)
+..|..++.|++|||++|.-.+.+|..++.|-+|++|+|++..+. .+|.++.+|+.|..|++..+.. ..++.+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i----- 637 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI----- 637 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch-----
Confidence 446888999999999988877789999999999999999999987 5889999999888888776531 122111
Q ss_pred ccccCCCCCCCccEEEccCCcCcc---chhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCc----EEECCCCCccccccc
Q 002227 159 VEIKDSPQWNRLSFVSCSCNRLVI---MDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLK----HLDLGFNNLRSIAAF 231 (950)
Q Consensus 159 ~~L~~L~~L~~L~~L~Ls~N~Lt~---LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~----~LdLS~N~L~~L~~l 231 (950)
...+.+|++|.+....... .-..+..+.+|+.|........-+..+..++.|. .+.+.++........
T Consensus 638 -----~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~ 712 (889)
T KOG4658|consen 638 -----LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS 712 (889)
T ss_pred -----hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecc
Confidence 1236778888876554221 1123344555555544332221112222222222 233233333334444
Q ss_pred cccccceeEEEecCCCCCCcc--cCCC------CCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 232 SEVSCHIVKLVLRNNALTTLR--GIEN------LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 232 ~~~L~~L~~L~Ls~N~Ls~Lp--~L~~------L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
...+.+|+.|.+.++.+..+. .... +++|..+...+. .....+.+.-..|+|+.|.+..++....
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~--~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC--HMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc--ccccccchhhccCcccEEEEeccccccc
Confidence 445567777777777665431 1111 112222222111 1111223334556777777777766544
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.84 E-value=5.6e-06 Score=104.10 Aligned_cols=79 Identities=22% Similarity=0.137 Sum_probs=68.8
Q ss_pred ccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 002227 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (950)
Q Consensus 66 ~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N 145 (950)
.++||++|..+.++|..++.|-+|++|+|++..+. .+|..|.+|..|.+||+..+.-...+|..+..|.+|..+.+...
T Consensus 574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 47899999999999999999999999999999998 88999999999999999998766656767777888877776544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=3.1e-05 Score=83.74 Aligned_cols=217 Identities=18% Similarity=0.128 Sum_probs=128.7
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCc----cCCCCCCCcEEEeeCCCCC---ccchhhHHhhhhhhhhhhccCCCccchhhh
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPL----SLLPFCRLKVLELRGCDLS---TSAAKGLLELRHTLEKIICHNSTNALRHVF 154 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~----sL~~L~nL~~LdLS~N~Ls---~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~ 154 (950)
.+.-+..++.++|++|.|...... .+.+-.+|+..+++.-... ..++..+.-|
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L-------------------- 84 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML-------------------- 84 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH--------------------
Confidence 344466777777777776543322 3334456666666553221 1122222111
Q ss_pred ccccccccCCCCCCCccEEEccCCcCc-cchh----hcCCCCCCcEEEccCCCCCCCc---------------CcCCCCC
Q 002227 155 ASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDE----SLQLLPAVETLDLSRNKFAKVD---------------NLRKCVN 214 (950)
Q Consensus 155 ~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~----sL~~L~~L~~LdLS~N~Lt~l~---------------~L~~L~~ 214 (950)
++.+.++++|+.++|+.|.+. ..|+ -+..-..|.+|.|++|.+..+. ....-|.
T Consensus 85 ------l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~ 158 (388)
T COG5238 85 ------LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK 158 (388)
T ss_pred ------HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC
Confidence 112235677888888888776 3332 3455667788888877766431 1234477
Q ss_pred CcEEECCCCCcccccc-----ccccccceeEEEecCCCCCC--c-----ccCCCCCCCCEEEccCCCCCCCchh---hhc
Q 002227 215 LKHLDLGFNNLRSIAA-----FSEVSCHIVKLVLRNNALTT--L-----RGIENLKSLEGLDISYNIISTFSEL---EFL 279 (950)
Q Consensus 215 L~~LdLS~N~L~~L~~-----l~~~L~~L~~L~Ls~N~Ls~--L-----p~L~~L~sL~~LdLs~N~Ls~l~~l---~~L 279 (950)
|+......|++..-+. .+..-..|+.+.+..|.|.. + -.+..+.+|+.|||.+|-++..... ..+
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 8888888888775432 11122478888888887754 1 2456678899999999988764332 345
Q ss_pred CCCCCCcEEEecCCCCCCCc---ccchhHhhccCCCcccccCCCcCCh
Q 002227 280 ASLPYLLNLWLEGNPLCCSR---WYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 280 ~~L~~L~~L~LsgNpLt~~~---~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
..++.|+.|.+..|-++... -++...-..+++|..|.++.|.+..
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 66777888988888876542 1122222345666777777776543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=7.3e-05 Score=59.86 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=26.9
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCc
Q 002227 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL 209 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L 209 (950)
+|++|++++|+|+.+|+.+..|++|+.|++++|+|+.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 56777777777777766677777777777777777665544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=3.8e-06 Score=82.75 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=49.6
Q ss_pred CccEEEccCCcCccchhhc---CCCCCCcEEEccCCCCCCCc-CcC-CCCCCcEEECCCCCccccccccccccceeEEEe
Q 002227 169 RLSFVSCSCNRLVIMDESL---QLLPAVETLDLSRNKFAKVD-NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL---~~L~~L~~LdLS~N~Lt~l~-~L~-~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~L 243 (950)
.+..++|+.++|-.+++.+ .....|+..+|++|.+..+| .|. .++.++.|+|++|.|+.+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4555666666665454432 23334444455555555443 221 223444555555555555444444444555555
Q ss_pred cCCCCCCcc-cCCCCCCCCEEEccCCCCCCCc
Q 002227 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFS 274 (950)
Q Consensus 244 s~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~ 274 (950)
+.|.|...| .+..+.+|-.|+..+|.+..++
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 555444433 3333444444444444444443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=6.6e-06 Score=81.13 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=90.3
Q ss_pred CCcEEEccCCCCCCCc----CcCCCCCCcEEECCCCCcccccccc-ccccceeEEEecCCCCCCcc-cCCCCCCCCEEEc
Q 002227 192 AVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDI 265 (950)
Q Consensus 192 ~L~~LdLS~N~Lt~l~----~L~~L~~L~~LdLS~N~L~~L~~l~-~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdL 265 (950)
.+..|+|+.++|-.++ .+.....|+..+|++|.+..+|+.+ ..++.++.|+|++|.|+.+| .+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4556777787776553 3555667777888888888877533 34567888888888888887 7788888888888
Q ss_pred cCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 266 s~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
++|.|...+. .+..|.+|-.|+..+|.+...+. . +-.-..+....+..+++....+.+
T Consensus 108 ~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~---d-l~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 108 RFNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV---D-LFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccCccccchH--HHHHHHhHHHhcCCCCccccCcH---H-HhccccHHHHHhcCCcccccCccc
Confidence 8888888763 34457778888888887765441 1 112234555666777776655443
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=5.8e-05 Score=81.42 Aligned_cols=113 Identities=27% Similarity=0.278 Sum_probs=70.1
Q ss_pred CCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCC
Q 002227 191 PAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYN 268 (950)
Q Consensus 191 ~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N 268 (950)
..|+.|.+.+..++.+..+..|++|+.|.++.|.+. +.. ++ -...+|+|++|+|+.|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~---------------------~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRR---------------------VSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCccc---------------------ccccceehhhhCCceeEEeecCC
Confidence 344444455555555545555555555555555322 211 11 1233477777777777
Q ss_pred CCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhH
Q 002227 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 269 ~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e 326 (950)
+|..+..+..+..+.+|..|++.+|..+....||..+|..++. ..+||+..+...+
T Consensus 102 ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~--L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 102 KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPS--LKYLDGCDVDGEE 157 (260)
T ss_pred ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhh--hccccccccCCcc
Confidence 7776655566777888889999999888888888888887744 4566777665443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00013 Score=58.52 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=17.1
Q ss_pred ceeEEEecCCCCCCccc-CCCCCCCCEEEccCCCCCCCc
Q 002227 237 HIVKLVLRNNALTTLRG-IENLKSLEGLDISYNIISTFS 274 (950)
Q Consensus 237 ~L~~L~Ls~N~Ls~Lp~-L~~L~sL~~LdLs~N~Ls~l~ 274 (950)
+|++|+|++|+|+.++. +..|++|+.|+|++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 34444444444444443 444444555555554444443
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4.9e-06 Score=90.67 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.1
Q ss_pred CCCcEEEeeCCCCCc
Q 002227 111 CRLKVLELRGCDLST 125 (950)
Q Consensus 111 ~nL~~LdLS~N~Ls~ 125 (950)
+.|++|||++..|+.
T Consensus 185 sRlq~lDLS~s~it~ 199 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITV 199 (419)
T ss_pred hhhHHhhcchhheeH
Confidence 468999999988874
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.29 E-value=0.0011 Score=76.67 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=29.5
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchh
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAK 129 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~ 129 (950)
+..+.+|+.|++++|.++ .+|. + .++|+.|.+++|.-...+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCc
Confidence 556789999999999877 4452 2 24799999988544333443
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=3.4e-05 Score=84.33 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCC
Q 002227 79 LRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGC 121 (950)
Q Consensus 79 Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N 121 (950)
+...+..+.+|+.|.|.++.+.+.+...+..-.+|+.|+|+.+
T Consensus 202 l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4445566666666666666666655555666666666666654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.0003 Score=86.77 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=56.4
Q ss_pred CCCccEEEccCCcCc--cchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCcccccc--ccccccceeEEE
Q 002227 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLV 242 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~--l~~~L~~L~~L~ 242 (950)
+|.|+.|.+++-.+. .+-.-..++|+|..||+|+.+++.+.+++.+++|+.|.+.+=.+..-.. ..+.+.+|+.||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 456666666655443 2223345566666666666666666666666666666665544443221 122345666666
Q ss_pred ecCCCCCCc--------ccCCCCCCCCEEEccCCCCCC
Q 002227 243 LRNNALTTL--------RGIENLKSLEGLDISYNIIST 272 (950)
Q Consensus 243 Ls~N~Ls~L--------p~L~~L~sL~~LdLs~N~Ls~ 272 (950)
+|..+.... ..-..||.|+.||.+++.+..
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 665543331 122335666666666555543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.04 E-value=0.0019 Score=74.88 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=14.6
Q ss_pred CCCCCCCcEEEeeCCCCCc
Q 002227 107 LLPFCRLKVLELRGCDLST 125 (950)
Q Consensus 107 L~~L~nL~~LdLS~N~Ls~ 125 (950)
+..+.+++.|++++|.|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s 66 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES 66 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc
Confidence 3345789999999998765
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.69 E-value=0.0012 Score=81.52 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCccEEEccCCcCc--cchhhc-CCCCCCcEEEccCCCCCCCc---CcCCCCCCcEEECCCCCccccccccccccceeEE
Q 002227 168 NRLSFVSCSCNRLV--IMDESL-QLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt--~LP~sL-~~L~~L~~LdLS~N~Lt~l~---~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L 241 (950)
.+|++|++++...- .-|..+ ..+|+|+.|.+++-.+..-+ -..++++|..||+|+.+++.+.. ...+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G-IS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG-ISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-HhccccHHHH
Confidence 46777777665432 222222 23566666666655443321 23445556666666655555422 2233555555
Q ss_pred EecCCCCCCc---ccCCCCCCCCEEEccCCCCCCCchh-----hhcCCCCCCcEEEecCCCC
Q 002227 242 VLRNNALTTL---RGIENLKSLEGLDISYNIISTFSEL-----EFLASLPYLLNLWLEGNPL 295 (950)
Q Consensus 242 ~Ls~N~Ls~L---p~L~~L~sL~~LdLs~N~Ls~l~~l-----~~L~~L~~L~~L~LsgNpL 295 (950)
.+.+=.+..- ..+..|++|+.||+|.......+.+ +.-..||+|+.|+.+++.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 5554444331 2444555555555555444332210 1122345555555554444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00017 Score=78.35 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=41.9
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCcccccc
Q 002227 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA 230 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~ 230 (950)
+.+.+.|++.++.|..| .....|+.|+.|.||-|+|+.+..|..|++|+.|+|..|.|..+..
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH
Confidence 34666777777777766 3445677777777777777776666666666666666666665543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0051 Score=66.74 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=73.2
Q ss_pred cccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhh-cCCCCCCcEEEecCCCCCCCcccchhHhhccCCC
Q 002227 234 VSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEF-LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (950)
Q Consensus 234 ~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~-L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L 312 (950)
.+..|+.|.+.+..++.+..+..+++|+.|.++.|.......+.. ...+|+|++|++++|.|.....++ .+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcch
Confidence 345677888888888888888899999999999994433223322 345699999999999998654333 35678889
Q ss_pred cccccCCCcCChhHHHHHHHH
Q 002227 313 AKLKVDGKEISTRELWERQLI 333 (950)
Q Consensus 313 ~~L~LdgN~Is~~e~~~~~~l 333 (950)
..|.+..+.++....+...++
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred hhhhcccCCccccccHHHHHH
Confidence 999999999887665554433
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.64 E-value=0.039 Score=52.61 Aligned_cols=113 Identities=15% Similarity=0.301 Sum_probs=46.6
Q ss_pred CCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccceeEE
Q 002227 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKL 241 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L 241 (950)
.+++|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .|..++.|+.+.+.. .+..++. .+..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 445666777663 4555544 4566666777777664 55553 466666677777754 4444443 22335666666
Q ss_pred EecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 002227 242 VLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (950)
Q Consensus 242 ~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L 285 (950)
.+..+ ++.++ .+..+ .|+.+.+.. .+..++. ..+.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-ccccccccC
Confidence 66554 44442 45555 666666554 3444433 344455444
No 66
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.96 E-value=0.011 Score=69.81 Aligned_cols=90 Identities=40% Similarity=0.507 Sum_probs=64.4
Q ss_pred ccccceeEEEecCCCCCCcccCC----CCCCCCEEEccCC--CCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchh--
Q 002227 233 EVSCHIVKLVLRNNALTTLRGIE----NLKSLEGLDISYN--IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQ-- 304 (950)
Q Consensus 233 ~~L~~L~~L~Ls~N~Ls~Lp~L~----~L~sL~~LdLs~N--~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~-- 304 (950)
...+.+..|+|++|+|..+..+. ..|+|..|+|++| .+.....+.-++.+ .|+.|.|.|||++..-..+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHH
Confidence 34578889999999988876443 4588999999999 66665544444443 589999999999876322322
Q ss_pred --HhhccCCCcccccCCCcCChh
Q 002227 305 --VFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 305 --~~~~L~~L~~L~LdgN~Is~~ 325 (950)
+...| ++++.|||..+...
T Consensus 294 ~~i~~~F--PKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 294 SAIRELF--PKLLRLDGVEVQPE 314 (585)
T ss_pred HHHHHhc--chheeecCcccCcc
Confidence 22344 67788999988753
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.05 E-value=0.0011 Score=78.69 Aligned_cols=181 Identities=24% Similarity=0.182 Sum_probs=99.2
Q ss_pred CcEEEccCCCCCCCCC----ccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCC
Q 002227 89 LKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (950)
Q Consensus 89 L~~LdLs~N~L~~~iP----~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L 164 (950)
|..|.|.+|.+..... ..+..++.|..|+|++|.+.+.....+..--
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l----------------------------- 139 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGL----------------------------- 139 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhc-----------------------------
Confidence 6666777777654322 2445567777777777777632222221100
Q ss_pred CC-CCCccEEEccCCcCc-----cchhhcCCCCCCcEEEccCCCCCCC------cC----cCCCCCCcEEECCCCCcccc
Q 002227 165 PQ-WNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DN----LRKCVNLKHLDLGFNNLRSI 228 (950)
Q Consensus 165 ~~-L~~L~~L~Ls~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~l------~~----L~~L~~L~~LdLS~N~L~~L 228 (950)
.. -..|++|.+..|.++ .+...+.....|+.|+++.|.+... .. +....++++|.|++|.++..
T Consensus 140 ~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~ 219 (478)
T KOG4308|consen 140 RLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS 219 (478)
T ss_pred ccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH
Confidence 00 023444455445554 3344555566677777777766431 12 23456677777777776632
Q ss_pred c-----cccccccc-eeEEEecCCCCCCc------ccCCCC-CCCCEEEccCCCCCCCchh---hhcCCCCCCcEEEecC
Q 002227 229 A-----AFSEVSCH-IVKLVLRNNALTTL------RGIENL-KSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEG 292 (950)
Q Consensus 229 ~-----~l~~~L~~-L~~L~Ls~N~Ls~L------p~L~~L-~sL~~LdLs~N~Ls~l~~l---~~L~~L~~L~~L~Lsg 292 (950)
. ......+. +..|++..|.+... +.+..+ ..+++++++.|.|+..... ..+..++.++.|.+..
T Consensus 220 ~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 220 SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 1 11111223 55577777777642 345555 5677777777777764321 2344566777777777
Q ss_pred CCCCCC
Q 002227 293 NPLCCS 298 (950)
Q Consensus 293 NpLt~~ 298 (950)
|++...
T Consensus 300 n~l~~~ 305 (478)
T KOG4308|consen 300 NPLTDY 305 (478)
T ss_pred CccccH
Confidence 777643
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.80 E-value=0.11 Score=49.40 Aligned_cols=109 Identities=13% Similarity=0.257 Sum_probs=49.6
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccc
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L 161 (950)
.|.++++|+.+.+.. .+......+|..+++|+.+.+.++ +.......+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~---------------------------- 56 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSN---------------------------- 56 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT----------------------------
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeec----------------------------
Confidence 466777888888753 566566667778878888888775 54322222322
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccc
Q 002227 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA 229 (950)
Q Consensus 162 ~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~ 229 (950)
+++|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .|.++ .|+.+.+.. .+..++
T Consensus 57 -----~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 57 -----CKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp ------TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred -----ccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 23455555543 4444433 3445666666666554 44432 45554 666666654 344443
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.62 E-value=0.01 Score=70.55 Aligned_cols=197 Identities=27% Similarity=0.275 Sum_probs=105.8
Q ss_pred cchhHHHHhcCCCCCcEEEccCCCCCCCCCc----cCCCC-CCCcEEEeeCCCCCccc----hhhHHhhhhhhhhhhccC
Q 002227 75 ALEQLRRILKLLTSLKVVSALPPPARDPTPL----SLLPF-CRLKVLELRGCDLSTSA----AKGLLELRHTLEKIICHN 145 (950)
Q Consensus 75 ~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~----sL~~L-~nL~~LdLS~N~Ls~~l----P~sL~~L~~Ll~LlL~~N 145 (950)
..+.+...+..++.|..|++++|.+.+.--. .+... ..|++|++..|.++... +..+.....+..+.+..|
T Consensus 103 ~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 103 GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhc
Confidence 3556677888999999999999999753222 22232 56788888888888632 334444444445555554
Q ss_pred CCccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc------CcCCCCC-CcEE
Q 002227 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD------NLRKCVN-LKHL 218 (950)
Q Consensus 146 ~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~------~L~~L~~-L~~L 218 (950)
.+......... . .++..+....++++|.+++|.++... .+...+. +..|
T Consensus 183 ~l~~~g~~~l~--~----------------------~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el 238 (478)
T KOG4308|consen 183 GLIELGLLVLS--Q----------------------ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLREL 238 (478)
T ss_pred ccchhhhHHHh--h----------------------hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHH
Confidence 43211110000 0 01111223445666666666555421 2333444 5556
Q ss_pred ECCCCCcccc-----ccccccc-cceeEEEecCCCCCCc------ccCCCCCCCCEEEccCCCCCCCchh---hhcCCCC
Q 002227 219 DLGFNNLRSI-----AAFSEVS-CHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSEL---EFLASLP 283 (950)
Q Consensus 219 dLS~N~L~~L-----~~l~~~L-~~L~~L~Ls~N~Ls~L------p~L~~L~sL~~LdLs~N~Ls~l~~l---~~L~~L~ 283 (950)
++..|.+... .+....+ +.++.|++..|.|+.- ..+..++.++.|.+++|.+...... ..+....
T Consensus 239 ~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~ 318 (478)
T KOG4308|consen 239 DLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKT 318 (478)
T ss_pred HHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcc
Confidence 6666666532 1122222 4567777777777662 2455666777788888777653321 1222333
Q ss_pred CCcEEEecCCCC
Q 002227 284 YLLNLWLEGNPL 295 (950)
Q Consensus 284 ~L~~L~LsgNpL 295 (950)
.+..+.+.++..
T Consensus 319 ~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 319 PLLHLVLGGTGK 330 (478)
T ss_pred cchhhhccccCc
Confidence 445555554443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.64 E-value=0.18 Score=58.65 Aligned_cols=39 Identities=26% Similarity=0.188 Sum_probs=23.3
Q ss_pred hcCCCCCcEEEccCCCCCCC--CCccCCCCCCCcEEEeeCC
Q 002227 83 LKLLTSLKVVSALPPPARDP--TPLSLLPFCRLKVLELRGC 121 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~--iP~sL~~L~nL~~LdLS~N 121 (950)
...++.|+.|.+..+.-... +-......++|+.|+++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 34467777777766532222 2234456678888888773
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=88.37 E-value=0.26 Score=33.59 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.0
Q ss_pred CccEEEccCCcCccchhhcCC
Q 002227 169 RLSFVSCSCNRLVIMDESLQL 189 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~ 189 (950)
+|++|+|++|+|+.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888888876654
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.50 E-value=0.021 Score=61.31 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=64.8
Q ss_pred CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCc
Q 002227 208 NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLL 286 (950)
Q Consensus 208 ~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~ 286 (950)
.+......+.||++.|++-.+..-+..+..|..|+++.|.|..+| .+..+..+..+++..|..+..| ..++.+|.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCCcc
Confidence 445556677777777777766655555677778888888877776 6677777788888888888877 5677888888
Q ss_pred EEEecCCCCC
Q 002227 287 NLWLEGNPLC 296 (950)
Q Consensus 287 ~L~LsgNpLt 296 (950)
.+++-+|++.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888888875
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.31 E-value=0.2 Score=57.83 Aligned_cols=128 Identities=22% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCCCCcEEEccCCC-CCCC--cC-cCCCCCCcEEECCCCC-ccc--cccccccccceeEEEecCCCCCC---c-ccCCCC
Q 002227 189 LLPAVETLDLSRNK-FAKV--DN-LRKCVNLKHLDLGFNN-LRS--IAAFSEVSCHIVKLVLRNNALTT---L-RGIENL 257 (950)
Q Consensus 189 ~L~~L~~LdLS~N~-Lt~l--~~-L~~L~~L~~LdLS~N~-L~~--L~~l~~~L~~L~~L~Ls~N~Ls~---L-p~L~~L 257 (950)
.+..|+.|+.++.. ++.. .. -.+.++|++|-|+.++ ++. +..+...++.|+.|++..+.+.. + ..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34556666665542 2221 11 2344666666666654 322 22233445666666666664432 1 122356
Q ss_pred CCCCEEEccCCCCCCCchhhhc----CCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccC
Q 002227 258 KSLEGLDISYNIISTFSELEFL----ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (950)
Q Consensus 258 ~sL~~LdLs~N~Ls~l~~l~~L----~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ld 318 (950)
+.|+.|.|+++.+..-..+..+ ..+..|..+-|++.|+.... ....+...+.|+.+.|-
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEHLSICRNLERIELI 434 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH--HHHHHhhCcccceeeee
Confidence 6677777776543322211111 23556777777777765332 12334455556554443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.03 E-value=0.28 Score=33.41 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=12.1
Q ss_pred CCcEEEeeCCCCCccchhhHH
Q 002227 112 RLKVLELRGCDLSTSAAKGLL 132 (950)
Q Consensus 112 nL~~LdLS~N~Ls~~lP~sL~ 132 (950)
+|++|||++|+|+ .+|.+|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4667777777766 4554443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.72 E-value=0.06 Score=57.88 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=62.8
Q ss_pred cCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEE
Q 002227 187 LQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLD 264 (950)
Q Consensus 187 L~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~Ld 264 (950)
+......+.||++.|++..+. .|.-++.|..|+++.|.|..+|..+.....++.+++..|.++..| .+...+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 445556677777777776653 566677777888888888777776666677777888888887776 777888888888
Q ss_pred ccCCCCC
Q 002227 265 ISYNIIS 271 (950)
Q Consensus 265 Ls~N~Ls 271 (950)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8777754
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.10 E-value=1.4 Score=28.26 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=6.9
Q ss_pred CccEEEccCCcCccch
Q 002227 169 RLSFVSCSCNRLVIMD 184 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP 184 (950)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.11 E-value=1.5 Score=28.22 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=3.8
Q ss_pred CCEEEccCCCCC
Q 002227 260 LEGLDISYNIIS 271 (950)
Q Consensus 260 L~~LdLs~N~Ls 271 (950)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.57 E-value=1 Score=52.38 Aligned_cols=107 Identities=22% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCCCcEEEccCC-CCCC--C-cCcCCCCCCcEEECCCC--Ccccc----ccccccccceeEEEecCCC-CCCc--ccCC-
Q 002227 190 LPAVETLDLSRN-KFAK--V-DNLRKCVNLKHLDLGFN--NLRSI----AAFSEVSCHIVKLVLRNNA-LTTL--RGIE- 255 (950)
Q Consensus 190 L~~L~~LdLS~N-~Lt~--l-~~L~~L~~L~~LdLS~N--~L~~L----~~l~~~L~~L~~L~Ls~N~-Ls~L--p~L~- 255 (950)
.+.|+.|.+.+. .+.. + +....++.|+.|+++++ .+... ......+++|+.|+++.+. ++.. ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555544 2332 1 23344566666666552 11111 1122234566666666665 4442 2222
Q ss_pred CCCCCCEEEccCCC-CCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 256 NLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 256 ~L~sL~~LdLs~N~-Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
.+++|+.|.+.++. +++..-......++.|+.|+|+++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 26667777766555 454332233445666777777766544
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.34 E-value=3 Score=50.02 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhcC-CCCCCcEEEecCC--CCCCCcccchhHhhccCCCcccccCCCcCChhHHHHHH
Q 002227 255 ENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGN--PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (950)
Q Consensus 255 ~~L~sL~~LdLs~N~Ls~l~~l~~L~-~L~~L~~L~LsgN--pLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~~~ 331 (950)
.+.+.+..++|++|+|..+..+..+. ..|+|..|+|++| .+....++. .+ ....|+.|.|+|||+...-...++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~--K~-k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD--KL-KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh--hh-cCCCHHHeeecCCccccchhhhHH
Confidence 45678889999999999887765554 4689999999999 554443322 12 234588999999999866555544
Q ss_pred HH
Q 002227 332 LI 333 (950)
Q Consensus 332 ~l 333 (950)
.+
T Consensus 292 yv 293 (585)
T KOG3763|consen 292 YV 293 (585)
T ss_pred HH
Confidence 33
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=69.69 E-value=3.9 Score=57.24 Aligned_cols=38 Identities=42% Similarity=0.466 Sum_probs=33.9
Q ss_pred EccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccc
Q 002227 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (950)
Q Consensus 264 dLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r 302 (950)
||++|+|+.++. ..|..+++|+.|+|++|||.|.|.+.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccccH
Confidence 689999999987 77889999999999999999998653
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=67.01 E-value=4.6 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.5
Q ss_pred CCccEEEccCCcCccchhh
Q 002227 168 NRLSFVSCSCNRLVIMDES 186 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~s 186 (950)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777777766654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=67.01 E-value=4.6 Score=28.23 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.5
Q ss_pred CCccEEEccCCcCccchhh
Q 002227 168 NRLSFVSCSCNRLVIMDES 186 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~s 186 (950)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777777766654
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.88 E-value=2.3 Score=29.25 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.9
Q ss_pred CCCCcEEEeeCCCCCccchhhH
Q 002227 110 FCRLKVLELRGCDLSTSAAKGL 131 (950)
Q Consensus 110 L~nL~~LdLS~N~Ls~~lP~sL 131 (950)
+++|++|+|++|.|+...+..|
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3688899999998876555444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=64.33 E-value=5.9 Score=27.67 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=13.0
Q ss_pred CCCCCEEEccCCCCCCCch
Q 002227 257 LKSLEGLDISYNIISTFSE 275 (950)
Q Consensus 257 L~sL~~LdLs~N~Ls~l~~ 275 (950)
+++|+.|+|++|+|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777777764
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=64.33 E-value=5.9 Score=27.67 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=13.0
Q ss_pred CCCCCEEEccCCCCCCCch
Q 002227 257 LKSLEGLDISYNIISTFSE 275 (950)
Q Consensus 257 L~sL~~LdLs~N~Ls~l~~ 275 (950)
+++|+.|+|++|+|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777777764
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.82 E-value=1.2 Score=47.39 Aligned_cols=39 Identities=33% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCCCCEEEccCC-CCCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 257 LKSLEGLDISYN-IISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 257 L~sL~~LdLs~N-~Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
.++|+.|+|+.| +|++- .+.++..+++|+.|.|.+=+..
T Consensus 150 ~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 456666666655 45553 4566667777777766654443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.83 E-value=11 Score=27.13 Aligned_cols=15 Identities=53% Similarity=0.784 Sum_probs=6.7
Q ss_pred CCcEEEccCCCCCCC
Q 002227 192 AVETLDLSRNKFAKV 206 (950)
Q Consensus 192 ~L~~LdLS~N~Lt~l 206 (950)
+|+.|+|++|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 344444444444433
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.99 E-value=13 Score=26.74 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=10.3
Q ss_pred CCCcEEECCCCCcccccc
Q 002227 213 VNLKHLDLGFNNLRSIAA 230 (950)
Q Consensus 213 ~~L~~LdLS~N~L~~L~~ 230 (950)
.+|+.|+|+.|+|+.+..
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 456666666666655543
No 89
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=49.36 E-value=29 Score=32.07 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=53.1
Q ss_pred cceEEEEEecCCcccceeEEEEeecCCeeEEEEEeeeecCCcccc--cccccccchhhHHHhhhc--cceEEEEEeecC
Q 002227 827 QYTVCWILEQDFMHRGREVAVLRSSENKFYVLLFGVTVDGTGSIL--NLLGCHKIEDIREVLIGL--GLQVLRVSTEMG 901 (950)
Q Consensus 827 ~~~~~~~~~~~~~~~~~e~~~l~ss~~k~~~ll~~~~~~~~~~~~--~~l~~~~~~~~~~v~~g~--glq~~r~~~~~~ 901 (950)
+-|+||.|-..-+.+. .|+ .-.+.-+||=|.+-. -.|-|+ +=|.--|++.+++.+||= =-||+||-=+-|
T Consensus 6 ~lafcy~~P~v~dvv~-~Vv--~i~d~~~YV~LleY~--iegmIl~~selsr~rirsi~kllVGk~e~v~ViRVDk~KG 79 (86)
T PHA02858 6 DLAFCYVFPNINEVTK-GIV--FVKDNIFYVKLIDYG--LEALIVNYVNVNADRAEKLKKKLVGKTINVQVIRTDKLKG 79 (86)
T ss_pred eeEEEEecCCCCeEEE-EEE--EEeccEEEEEEecCc--cceEEecHHHHhHHHHHhhhhhhcCCeeEEEEEEECCCCC
Confidence 5689999998888886 444 567899999999985 445554 667788999999999773 467888754443
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.84 E-value=12 Score=40.01 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=48.4
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCC-CCCccCC-CCCCCcEEEeeCC-CCCccchhhHHhhhhhhhhhhc
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD-PTPLSLL-PFCRLKVLELRGC-DLSTSAAKGLLELRHTLEKIIC 143 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~-~iP~sL~-~L~nL~~LdLS~N-~Ls~~lP~sL~~L~~Ll~LlL~ 143 (950)
.+|-+++....+=-+.+.+++.|+.|.+.++.-.+ .--..++ ..++|+.|+|++| +|+......+..+++|..+.+.
T Consensus 105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred EEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34444444333334567788888888887765221 1111122 3489999999977 5776666677777777766654
Q ss_pred c
Q 002227 144 H 144 (950)
Q Consensus 144 ~ 144 (950)
+
T Consensus 185 ~ 185 (221)
T KOG3864|consen 185 D 185 (221)
T ss_pred C
Confidence 3
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=41.91 E-value=20 Score=42.20 Aligned_cols=56 Identities=27% Similarity=0.253 Sum_probs=34.1
Q ss_pred ccCCCCccch--hHHHHhcCCCCCcEEEccCCCC-CCCCCccCC-CCCCCcEEEeeCCCC
Q 002227 68 SDLGDHRALE--QLRRILKLLTSLKVVSALPPPA-RDPTPLSLL-PFCRLKVLELRGCDL 123 (950)
Q Consensus 68 LdLs~n~~l~--~Lp~~L~~L~~L~~LdLs~N~L-~~~iP~sL~-~L~nL~~LdLS~N~L 123 (950)
+++.++..+. .+...-..+..|+.|+.++... ++..-.+++ +..+|++|.|+.++-
T Consensus 273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 3444554332 2445556788899999876543 332222333 568999999998873
No 92
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=40.85 E-value=27 Score=33.85 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.5
Q ss_pred EEEEEeecCcEEEEEeccHHHHHHHhhhee
Q 002227 893 VLRVSTEMGATYLLMTRSIEKSRQLFCTLQ 922 (950)
Q Consensus 893 ~~r~~~~~~~~~~~~t~~~~~~~~~~~~~~ 922 (950)
|.||...+|..|||-|.+.|+..+=+..|+
T Consensus 86 VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 86 VFRLRTADGSEYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-TTS-EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCHHHHHHHHHHHh
Confidence 789999999999999999999888666554
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=40.13 E-value=18 Score=26.21 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=12.2
Q ss_pred CCCCEEEccCCCCCCCch
Q 002227 258 KSLEGLDISYNIISTFSE 275 (950)
Q Consensus 258 ~sL~~LdLs~N~Ls~l~~ 275 (950)
++|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777664
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.90 E-value=33 Score=24.74 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.3
Q ss_pred CCCcEEEeeCCCCCc
Q 002227 111 CRLKVLELRGCDLST 125 (950)
Q Consensus 111 ~nL~~LdLS~N~Ls~ 125 (950)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578889999998864
Done!