Query 002227
Match_columns 950
No_of_seqs 662 out of 3498
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:47:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 6.3E-25 2.2E-29 246.1 18.8 293 25-327 44-356 (390)
2 3v47_A TOLL-like receptor 5B a 99.9 1E-24 3.4E-29 248.1 17.6 300 24-327 28-412 (455)
3 3oja_B Anopheles plasmodium-re 99.9 2.1E-24 7.2E-29 256.4 19.2 293 25-327 50-362 (597)
4 4fmz_A Internalin; leucine ric 99.9 3.7E-23 1.3E-27 227.2 24.7 276 24-324 42-325 (347)
5 2id5_A Lingo-1, leucine rich r 99.9 6.7E-24 2.3E-28 243.8 17.7 279 23-328 29-338 (477)
6 3zyi_A Leucine-rich repeat-con 99.9 1.3E-23 4.3E-28 240.9 17.4 226 87-326 75-306 (452)
7 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 240.3 17.1 226 87-326 64-295 (440)
8 2id5_A Lingo-1, leucine rich r 99.9 3E-23 1E-27 238.3 19.5 289 23-325 53-358 (477)
9 4fmz_A Internalin; leucine ric 99.9 1.9E-22 6.5E-27 221.6 24.3 218 83-322 128-345 (347)
10 3rgz_A Protein brassinosteroid 99.9 1.5E-23 5E-28 256.4 15.8 247 65-324 396-718 (768)
11 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-23 2.1E-27 238.0 20.2 159 165-330 321-488 (520)
12 3t6q_A CD180 antigen; protein- 99.9 6.9E-23 2.3E-27 241.8 20.9 288 27-328 255-565 (606)
13 4eco_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 251.8 14.6 242 73-323 193-470 (636)
14 1xku_A Decorin; proteoglycan, 99.9 1.1E-22 3.9E-27 222.7 20.7 267 27-324 32-307 (330)
15 3zyj_A Leucine-rich repeat-con 99.9 5.3E-23 1.8E-27 234.9 18.5 226 66-301 67-297 (440)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-22 4.1E-27 236.5 21.9 298 24-327 24-514 (549)
17 3zyi_A Leucine-rich repeat-con 99.9 6.2E-23 2.1E-27 235.2 19.0 227 65-301 77-308 (452)
18 1ogq_A PGIP-2, polygalacturona 99.9 4.9E-24 1.7E-28 233.5 8.6 245 64-324 51-305 (313)
19 4eco_A Uncharacterized protein 99.9 2E-23 6.8E-28 250.3 13.9 230 79-323 239-501 (636)
20 4ecn_A Leucine-rich repeat pro 99.9 1.2E-22 4E-27 251.9 20.8 240 77-323 438-710 (876)
21 3v47_A TOLL-like receptor 5B a 99.9 1.1E-22 3.8E-27 231.3 18.6 276 24-300 52-412 (455)
22 1o6v_A Internalin A; bacterial 99.9 3.2E-22 1.1E-26 230.1 21.1 270 25-325 45-324 (466)
23 3t6q_A CD180 antigen; protein- 99.9 4.5E-22 1.6E-26 234.8 22.9 270 25-295 56-412 (606)
24 1xku_A Decorin; proteoglycan, 99.9 2.9E-22 9.9E-27 219.5 19.7 219 87-324 52-277 (330)
25 1ziw_A TOLL-like receptor 3; i 99.9 6.1E-22 2.1E-26 237.1 22.8 240 83-326 325-625 (680)
26 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-22 5.7E-27 221.8 16.3 262 27-323 34-307 (332)
27 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5.3E-27 250.8 17.1 231 78-323 480-741 (876)
28 3o53_A Protein LRIM1, AGAP0063 99.9 8.1E-23 2.8E-27 223.7 12.5 236 67-326 14-253 (317)
29 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-22 6.5E-27 238.0 16.5 296 24-323 30-461 (606)
30 1ogq_A PGIP-2, polygalacturona 99.9 8.7E-24 3E-28 231.4 4.3 245 27-298 51-306 (313)
31 3rgz_A Protein brassinosteroid 99.9 1.4E-22 5E-27 247.6 15.5 245 65-324 420-741 (768)
32 1ozn_A Reticulon 4 receptor; N 99.9 2E-22 6.7E-27 216.4 14.7 206 86-301 31-243 (285)
33 2z66_A Variable lymphocyte rec 99.9 7.5E-23 2.6E-27 221.5 11.0 227 87-327 28-265 (306)
34 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5E-26 224.6 22.4 262 23-324 65-345 (466)
35 2z66_A Variable lymphocyte rec 99.9 3.6E-22 1.2E-26 216.1 16.1 268 29-324 10-288 (306)
36 3o6n_A APL1; leucine-rich repe 99.9 5.4E-22 1.8E-26 222.3 17.1 226 82-324 64-309 (390)
37 2z80_A TOLL-like receptor 2, v 99.9 2.5E-22 8.6E-27 222.3 13.0 271 30-327 35-318 (353)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-21 8.4E-26 227.7 22.1 296 24-329 50-516 (562)
39 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-22 1.3E-26 235.5 14.3 242 67-328 311-563 (606)
40 2ft3_A Biglycan; proteoglycan, 99.9 6.9E-22 2.4E-26 216.9 14.5 236 67-325 37-279 (332)
41 1ziw_A TOLL-like receptor 3; i 99.9 9.8E-22 3.4E-26 235.3 17.1 269 24-300 327-626 (680)
42 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.8E-26 233.0 17.1 226 82-324 70-338 (597)
43 1p9a_G Platelet glycoprotein I 99.9 5.4E-21 1.8E-25 207.7 19.9 202 83-300 6-212 (290)
44 2z7x_B TOLL-like receptor 1, v 99.9 3.8E-21 1.3E-25 222.9 19.8 99 24-125 19-129 (520)
45 2z80_A TOLL-like receptor 2, v 99.9 5.6E-22 1.9E-26 219.5 11.9 253 23-299 49-317 (353)
46 2z63_A TOLL-like receptor 4, v 99.9 1.3E-21 4.4E-26 228.3 15.2 154 166-323 280-458 (570)
47 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-21 7.1E-26 226.1 17.0 136 164-300 357-514 (549)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-20 4.2E-25 221.3 23.5 117 209-329 465-586 (635)
49 2z63_A TOLL-like receptor 4, v 99.9 5.3E-21 1.8E-25 223.1 20.3 136 187-326 392-534 (570)
50 1wwl_A Monocyte differentiatio 99.9 5.1E-22 1.7E-26 216.9 10.8 202 85-324 93-310 (312)
51 3oja_A Leucine-rich immune mol 99.9 9.4E-22 3.2E-26 228.8 13.4 218 85-326 32-253 (487)
52 4fcg_A Uncharacterized protein 99.9 9.9E-22 3.4E-26 216.9 12.6 223 86-324 80-315 (328)
53 4fcg_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 212.4 16.1 230 65-299 83-317 (328)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-20 4.2E-25 202.3 19.7 225 90-330 14-245 (285)
55 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-22 7E-27 220.5 5.7 229 65-317 36-269 (317)
56 3oja_A Leucine-rich immune mol 99.8 9.2E-22 3.2E-26 228.9 9.2 235 32-298 13-252 (487)
57 2z62_A TOLL-like receptor 4, v 99.8 5.6E-21 1.9E-25 204.0 14.5 203 87-299 28-240 (276)
58 1h6u_A Internalin H; cell adhe 99.8 6.4E-21 2.2E-25 208.4 15.1 219 84-324 38-256 (308)
59 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-20 5.5E-25 231.9 20.6 291 24-323 22-394 (844)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-20 6.7E-25 220.0 17.9 116 29-149 34-160 (562)
61 2o6q_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 196.6 19.5 179 87-299 37-221 (270)
62 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-19 3.7E-24 224.5 22.6 290 22-324 44-415 (844)
63 1wwl_A Monocyte differentiatio 99.8 3.4E-22 1.1E-26 218.3 -0.3 154 166-325 119-289 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-19 5.3E-24 216.7 22.4 255 26-329 40-303 (622)
65 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-19 6.1E-24 208.2 21.8 252 25-322 41-298 (457)
66 1jl5_A Outer protein YOPM; leu 99.8 1.6E-19 5.3E-24 208.5 19.9 250 26-297 91-371 (454)
67 1jl5_A Outer protein YOPM; leu 99.8 4.5E-20 1.5E-24 213.0 14.3 258 26-324 11-291 (454)
68 4g8a_A TOLL-like receptor 4; l 99.8 2E-19 6.8E-24 211.0 18.2 85 236-324 469-556 (635)
69 2z62_A TOLL-like receptor 4, v 99.8 3.1E-19 1.1E-23 190.5 18.0 219 91-326 11-240 (276)
70 3bz5_A Internalin-J, INLJ; leu 99.8 6.3E-19 2.2E-23 203.6 21.4 221 67-323 46-267 (457)
71 2xwt_C Thyrotropin receptor; s 99.8 1E-19 3.5E-24 190.4 12.0 201 76-293 23-236 (239)
72 2ca6_A RAN GTPase-activating p 99.8 1.3E-20 4.6E-25 210.9 4.5 80 68-147 37-134 (386)
73 4glp_A Monocyte differentiatio 99.8 8.8E-20 3E-24 198.8 10.1 202 85-324 89-308 (310)
74 1p9a_G Platelet glycoprotein I 99.8 1E-18 3.5E-23 189.7 18.2 203 106-326 5-211 (290)
75 1h6u_A Internalin H; cell adhe 99.8 8E-19 2.7E-23 191.8 15.3 207 93-324 25-231 (308)
76 1h6t_A Internalin B; cell adhe 99.8 9.7E-19 3.3E-23 189.8 15.1 198 84-325 43-240 (291)
77 3rfs_A Internalin B, repeat mo 99.8 1.8E-18 6.1E-23 185.2 16.5 179 83-299 37-221 (272)
78 2o6q_A Variable lymphocyte rec 99.8 2.7E-18 9.2E-23 183.4 16.1 197 27-272 17-219 (270)
79 3m19_A Variable lymphocyte rec 99.8 7.1E-18 2.4E-22 178.2 18.9 175 87-298 14-194 (251)
80 2ca6_A RAN GTPase-activating p 99.8 1.1E-19 3.7E-24 203.6 4.7 246 75-326 20-319 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.8 6.2E-18 2.1E-22 202.8 19.0 232 24-298 59-299 (622)
82 4glp_A Monocyte differentiatio 99.8 3.7E-19 1.3E-23 193.9 6.9 195 65-297 93-308 (310)
83 3goz_A Leucine-rich repeat-con 99.7 8.3E-19 2.8E-23 195.4 7.7 255 69-329 4-303 (362)
84 2xwt_C Thyrotropin receptor; s 99.7 6.8E-18 2.3E-22 176.6 13.1 202 99-320 23-236 (239)
85 1z7x_W Ribonuclease inhibitor; 99.7 6.6E-19 2.3E-23 200.3 4.6 31 24-54 26-61 (461)
86 1z7x_W Ribonuclease inhibitor; 99.7 7.1E-19 2.4E-23 200.0 3.9 256 66-327 116-415 (461)
87 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.3E-22 199.6 14.3 176 83-300 39-214 (605)
88 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.3E-22 177.3 13.0 197 88-326 20-221 (272)
89 3m19_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 172.0 15.8 170 68-273 19-194 (251)
90 3cvr_A Invasion plasmid antige 99.7 3.3E-17 1.1E-21 194.6 15.8 180 87-325 59-245 (571)
91 3goz_A Leucine-rich repeat-con 99.7 6.7E-18 2.3E-22 188.0 8.9 227 67-298 26-299 (362)
92 1dce_A Protein (RAB geranylger 99.7 1.2E-19 4.2E-24 215.4 -7.2 202 108-317 346-567 (567)
93 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.6E-22 179.2 7.2 171 86-299 18-188 (263)
94 2ast_B S-phase kinase-associat 99.7 1.1E-17 3.7E-22 182.6 7.3 238 67-324 51-307 (336)
95 4ay9_X Follicle-stimulating ho 99.7 8.1E-17 2.8E-21 178.7 13.0 223 76-318 21-254 (350)
96 1h6t_A Internalin B; cell adhe 99.7 2.1E-16 7.1E-21 171.5 14.5 185 93-324 30-214 (291)
97 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.5E-21 170.1 12.2 171 133-325 17-187 (263)
98 2xot_A Amphoterin-induced prot 99.7 2.1E-16 7E-21 176.3 12.3 175 90-300 21-206 (361)
99 3cvr_A Invasion plasmid antige 99.7 8.6E-16 2.9E-20 182.5 17.8 163 112-325 60-222 (571)
100 1m9s_A Internalin B; cell inva 99.7 2E-16 6.7E-21 189.3 11.7 190 89-325 23-212 (605)
101 3e6j_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 159.5 14.5 131 168-299 40-175 (229)
102 2v9t_B SLIT homolog 2 protein 99.6 2.4E-15 8.3E-20 156.5 15.4 130 169-299 33-168 (220)
103 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.4E-20 154.6 12.6 124 169-296 67-194 (197)
104 2v9t_B SLIT homolog 2 protein 99.6 3E-15 1E-19 155.9 13.6 153 171-329 14-171 (220)
105 1dce_A Protein (RAB geranylger 99.6 1.2E-17 4.2E-22 198.2 -5.4 200 84-290 346-567 (567)
106 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.6E-20 155.1 10.3 150 166-324 42-195 (197)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 3.6E-15 1.2E-19 155.2 13.0 131 169-300 33-170 (220)
108 4ay9_X Follicle-stimulating ho 99.6 1.3E-15 4.6E-20 168.9 9.8 235 29-293 12-256 (350)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 7.6E-15 2.6E-19 152.8 14.6 154 170-329 13-172 (220)
110 2xot_A Amphoterin-induced prot 99.6 4.8E-15 1.6E-19 165.2 13.9 157 169-329 40-208 (361)
111 2ast_B S-phase kinase-associat 99.6 3.1E-16 1.1E-20 171.1 4.2 223 86-326 46-287 (336)
112 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 152.2 15.7 151 169-326 20-175 (229)
113 2o6s_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 149.5 11.9 99 168-271 76-178 (208)
114 2o6s_A Variable lymphocyte rec 99.6 1.6E-14 5.4E-19 147.8 13.3 131 168-299 28-164 (208)
115 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.4E-21 162.8 -5.2 162 169-332 24-194 (198)
116 2ell_A Acidic leucine-rich nuc 99.5 2.8E-14 9.6E-19 141.1 9.7 133 167-299 23-163 (168)
117 1w8a_A SLIT protein; signaling 99.5 6.5E-14 2.2E-18 142.6 12.4 127 171-300 11-143 (192)
118 2wfh_A SLIT homolog 2 protein 99.5 7.2E-14 2.5E-18 142.8 12.6 127 171-300 13-143 (193)
119 1a9n_A U2A', U2A'; complex (nu 99.5 3.1E-14 1E-18 142.5 8.3 136 188-324 16-154 (176)
120 3ogk_B Coronatine-insensitive 99.5 1.8E-14 6E-19 169.0 7.4 297 25-325 163-528 (592)
121 3ogk_B Coronatine-insensitive 99.5 1.3E-14 4.4E-19 170.2 4.6 285 26-322 220-550 (592)
122 2je0_A Acidic leucine-rich nuc 99.5 8.6E-14 2.9E-18 134.9 8.5 125 167-291 16-148 (149)
123 4b8c_D Glucose-repressible alc 99.5 2.5E-14 8.7E-19 174.4 5.6 179 78-296 215-404 (727)
124 2ell_A Acidic leucine-rich nuc 99.4 1.2E-13 4.2E-18 136.5 9.1 136 188-324 21-161 (168)
125 2o6r_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 132.3 14.2 128 169-299 8-140 (177)
126 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-13 3.8E-18 138.4 7.5 132 165-296 16-153 (176)
127 2je0_A Acidic leucine-rich nuc 99.4 3.6E-13 1.2E-17 130.5 8.4 129 189-318 15-148 (149)
128 2p1m_B Transport inhibitor res 99.4 8.1E-14 2.8E-18 163.3 3.4 205 110-326 288-522 (594)
129 2wfh_A SLIT homolog 2 protein 99.4 3.4E-12 1.1E-16 130.4 14.5 131 194-329 13-145 (193)
130 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.8E-17 160.0 9.3 133 165-298 221-356 (727)
131 1w8a_A SLIT protein; signaling 99.3 9.3E-12 3.2E-16 126.6 13.6 130 194-329 11-145 (192)
132 1ds9_A Outer arm dynein; leuci 99.3 6.9E-15 2.3E-19 150.0 -10.0 82 214-298 94-187 (198)
133 2p1m_B Transport inhibitor res 99.3 3.3E-13 1.1E-17 158.1 2.4 233 77-321 279-542 (594)
134 3sb4_A Hypothetical leucine ri 99.3 3.1E-12 1.1E-16 140.4 6.4 97 190-289 225-327 (329)
135 2o6r_A Variable lymphocyte rec 99.3 7.9E-11 2.7E-15 117.4 15.8 130 193-327 9-141 (177)
136 3g39_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 118.3 12.3 104 194-300 12-119 (170)
137 2r9u_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 117.9 12.2 104 194-300 15-122 (174)
138 3sb4_A Hypothetical leucine ri 99.2 2.5E-11 8.5E-16 133.2 8.3 177 86-265 100-328 (329)
139 2r9u_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 113.7 12.2 104 170-275 14-122 (174)
140 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.2E-15 113.8 11.3 104 169-274 10-118 (170)
141 2ifg_A High affinity nerve gro 99.1 3E-10 1E-14 124.9 9.9 98 202-301 20-121 (347)
142 3un9_A NLR family member X1; l 99.0 6.2E-11 2.1E-15 133.5 3.2 183 111-324 72-284 (372)
143 2ifg_A High affinity nerve gro 99.0 3.3E-10 1.1E-14 124.6 7.6 127 171-299 11-144 (347)
144 3un9_A NLR family member X1; l 98.9 1.3E-10 4.6E-15 130.8 1.5 178 86-296 71-283 (372)
145 4fdw_A Leucine rich hypothetic 98.9 5.4E-09 1.8E-13 118.9 14.3 190 88-296 158-358 (401)
146 4fdw_A Leucine rich hypothetic 98.9 1.7E-08 5.9E-13 114.8 14.9 217 82-323 131-358 (401)
147 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.6E-12 101.4 1.5 112 210-324 138-263 (267)
148 2ra8_A Uncharacterized protein 98.3 5.4E-07 1.8E-11 101.3 5.8 62 235-296 251-320 (362)
149 2ra8_A Uncharacterized protein 98.2 1.1E-06 3.9E-11 98.7 7.1 156 78-269 163-341 (362)
150 1io0_A Tropomodulin; LRR prote 98.2 5.6E-07 1.9E-11 91.1 4.2 123 76-227 25-165 (185)
151 1io0_A Tropomodulin; LRR prote 98.1 2.1E-06 7.3E-11 86.9 5.0 59 168-226 65-136 (185)
152 4fs7_A Uncharacterized protein 98.1 2.5E-05 8.6E-10 87.6 13.9 141 168-318 230-374 (394)
153 4gt6_A Cell surface protein; l 98.0 0.00013 4.4E-09 81.9 17.5 105 209-321 261-368 (394)
154 4fs7_A Uncharacterized protein 97.8 0.00016 5.4E-09 81.1 14.6 228 82-320 66-353 (394)
155 4gt6_A Cell surface protein; l 97.8 0.00038 1.3E-08 78.0 16.3 225 82-321 132-389 (394)
156 3rw6_A Nuclear RNA export fact 97.6 2.3E-05 8E-10 84.6 3.4 91 173-264 148-257 (267)
157 4h09_A Hypothetical leucine ri 97.3 0.0016 5.4E-08 72.1 14.0 102 186-291 212-318 (379)
158 4h09_A Hypothetical leucine ri 97.3 0.0047 1.6E-07 68.3 16.6 102 186-291 235-341 (379)
159 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00083 2.8E-08 69.3 5.9 120 78-226 32-170 (197)
160 3e4g_A ATP synthase subunit S, 96.9 0.00034 1.2E-08 70.9 2.6 32 192-223 62-95 (176)
161 3rfe_A Platelet glycoprotein I 96.7 0.0024 8.1E-08 61.2 7.2 61 239-301 11-73 (130)
162 3e4g_A ATP synthase subunit S, 96.6 0.003 1E-07 64.0 6.8 80 213-294 61-150 (176)
163 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0036 1.2E-07 64.5 5.3 36 169-204 71-111 (197)
164 3rfe_A Platelet glycoprotein I 95.6 0.014 4.9E-07 55.7 6.0 53 172-226 12-68 (130)
165 4fxw_B Splicing factor 1; UHM, 42.5 14 0.00046 35.2 2.8 30 595-624 72-115 (124)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.3e-25 Score=246.11 Aligned_cols=293 Identities=14% Similarity=0.140 Sum_probs=228.4
Q ss_pred ccCCcEEEecCCCccchhhhh-hhccccccccCC-CCccc---------cccccccCCCCccchhHHHHhcCCCCCcEEE
Q 002227 25 IEGSIVLKLNPAGLHYVQSRL-EALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L-~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~Ld 93 (950)
+.+++.|++..+.+..+|..+ ..++.|+.+... ..+.. -.+..+++++|......|..|.++++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 577889999999999998764 667767665442 11111 1234677888776665566788899999999
Q ss_pred ccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccc-------ccCCCC
Q 002227 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (950)
Q Consensus 94 Ls~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~-------L~~L~~ 166 (950)
|++|.+....+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..+.......+.. +..+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 9999888655556788899999999999998877778888888888888888877653221111110 111123
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccc-cccccccceeEEEecC
Q 002227 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~ 245 (950)
.++|+.|++++|.+..+|.. .+++|+.|++++|.++.++.+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 45688888888888877653 35789999999999999988999999999999999999874 4556789999999999
Q ss_pred CCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 246 N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
|+|+.++ .+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|+++..+ +..++.|+.++|++|++.+
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence 9999986 5678999999999999999987 45678899999999999998654 4567889999999999998
Q ss_pred hHH
Q 002227 325 REL 327 (950)
Q Consensus 325 ~e~ 327 (950)
...
T Consensus 354 ~~~ 356 (390)
T 3o6n_A 354 NSL 356 (390)
T ss_dssp HHH
T ss_pred hhH
Confidence 653
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1e-24 Score=248.15 Aligned_cols=300 Identities=19% Similarity=0.212 Sum_probs=229.1
Q ss_pred cccCCcEEEecCCCccch-hhhhhhccccccccCCCC-c---------c-ccccccccCCCCccchhHHHHhcCCCCCcE
Q 002227 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-L---------D-YLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~~~-L---------~-~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~ 91 (950)
+...++.|++..+.+..+ |..+..+++|+.|..... + . .-.+..+++++|...+..|..|.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 456788999999999887 666777777777654211 1 1 112456788888776666788888899999
Q ss_pred EEccCCCCCCCCCcc--CCCCCCCcEEEeeCCCCCccchhh-HHhhhhhhhhhhccCCCccchhhhcccc----------
Q 002227 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRI---------- 158 (950)
Q Consensus 92 LdLs~N~L~~~iP~s--L~~L~nL~~LdLS~N~Ls~~lP~s-L~~L~~Ll~LlL~~N~L~sL~~l~~~~i---------- 158 (950)
|+|++|.+.+..|.. |..+++|++|+|++|.+++..|.. +..+++|..+.+.+|.+..+.......+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999888887755444 888889999999999988876765 7888888888888887765533221111
Q ss_pred -----ccc----------cCCCCCCCccEEEccCCcCc-cchhhcC----------------------------------
Q 002227 159 -----VEI----------KDSPQWNRLSFVSCSCNRLV-IMDESLQ---------------------------------- 188 (950)
Q Consensus 159 -----~~L----------~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~---------------------------------- 188 (950)
..+ ..+..+++|+.|++++|.++ .+|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 010 11224568999999999886 2332221
Q ss_pred -----CCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCC
Q 002227 189 -----LLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLK 258 (950)
Q Consensus 189 -----~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~ 258 (950)
..++|+.|++++|.+..+ ..+..+++|+.|+|++|.|..+++ .+..+++|+.|+|++|.|+.++ .+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 125789999999998875 368899999999999999998754 5667899999999999998873 788999
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHH
Q 002227 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (950)
Q Consensus 259 sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~ 327 (950)
+|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++++...
T Consensus 348 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccCh-hhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998854 67889999999999999998765 3456788999999999999998753
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-24 Score=256.42 Aligned_cols=293 Identities=14% Similarity=0.140 Sum_probs=231.8
Q ss_pred ccCCcEEEecCCCccchhhhh-hhccccccccCC-CCccc---------cccccccCCCCccchhHHHHhcCCCCCcEEE
Q 002227 25 IEGSIVLKLNPAGLHYVQSRL-EALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L-~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~Ld 93 (950)
+.+++.|.+..+.+..+|..+ ..++.|+.|... ..+.. -.+..++|++|...+..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 467788999999999888664 556666665442 11111 1345678888876666666789999999999
Q ss_pred ccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccc-------ccCCCC
Q 002227 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (950)
Q Consensus 94 Ls~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~-------L~~L~~ 166 (950)
|++|.++...+..|..+++|++|+|++|.+++..|..+..++.|..|.+.+|.+..++......+.. +..+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 9999998766667789999999999999999888888999999999999999877654222111111 111234
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccc-cccccccceeEEEecC
Q 002227 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~ 245 (950)
..+|+.|++++|.+..+|..+ .++|+.|+|++|.++.++.+..+++|+.|+|++|.|.+++ ..+..+++|+.|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 457888888888888776543 4689999999999999988999999999999999999874 4566789999999999
Q ss_pred CCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 246 N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
|.|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|+|...+ +..++.|+.++|++|++.+
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccC--cccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCC
Confidence 9999987 5667999999999999999987 45788999999999999998664 4567889999999999998
Q ss_pred hHH
Q 002227 325 REL 327 (950)
Q Consensus 325 ~e~ 327 (950)
...
T Consensus 360 ~~~ 362 (597)
T 3oja_B 360 NSL 362 (597)
T ss_dssp HHH
T ss_pred hhH
Confidence 753
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.7e-23 Score=227.21 Aligned_cols=276 Identities=17% Similarity=0.226 Sum_probs=156.2
Q ss_pred cccCCcEEEecCCCccchhhhhhhccccccccCC-CCcccc-------ccccccCCCCccchhHHHHhcCCCCCcEEEcc
Q 002227 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAG-APLDYL-------RAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~-~~L~~L-------~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs 95 (950)
-+..++.|.+..+.+..++. +..+++|+.+... ..+..+ .+..+++++|.. ..++ .+..+++|++|+|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i-~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI-TDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc-cCch-HHcCCCcCCEEECc
Confidence 45667888888888888764 6666666665442 122111 234567777743 3344 58889999999999
Q ss_pred CCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEc
Q 002227 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC 175 (950)
Q Consensus 96 ~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~L 175 (950)
+|.+.+..+ +..+++|++|++++|.....++ .+..++.|..+.+.+|.+..+.. +..+++|+.|++
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~L~~L~l 184 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-----------IANLTDLYSLSL 184 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCSEEEC
T ss_pred CCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-----------hccCCCCCEEEc
Confidence 998875433 7888888888888886555343 47778888888888877665543 123445555555
Q ss_pred cCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCC
Q 002227 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255 (950)
Q Consensus 176 s~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~ 255 (950)
++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|+|++|.++.++. ...+++|+.|+|++|.++.++.+.
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 262 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVK 262 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGT
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHh
Confidence 5555555443 44455555555555555544444444555555555555554443 233344555555555554444444
Q ss_pred CCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 256 ~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
.+++|+.|++++|.|+.++ .+..+++|+.|++++|+++... ...+..++.|+.++|++|+++.
T Consensus 263 ~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECCSSSCCC
T ss_pred cCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEccCCcccc
Confidence 4555555555555544442 2344444555555555443221 2233444444445555544443
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=243.75 Aligned_cols=279 Identities=15% Similarity=0.147 Sum_probs=186.1
Q ss_pred ccccCCcEEEecCCCccchh-hhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCC
Q 002227 23 PLIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (950)
Q Consensus 23 slL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~ 101 (950)
.+...++.|++..+.+..++ ..+..++.|+. ++|++|......|..|.++++|+.|+|++|.+..
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~--------------L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEE--------------LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCE--------------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCE--------------EECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 44556778888888877764 34455554443 4445554444445566667777777777776665
Q ss_pred CCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCc
Q 002227 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (950)
Q Consensus 102 ~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt 181 (950)
..+..|..+++|++|+|++|.+.+..|..+..+++|..+.+.+|.+..+.... +..+++|+.|++++|.++
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA---------FSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS---------STTCTTCCEEEEESCCCS
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh---------ccCCCCCCEEECCCCcCc
Confidence 55556666777777777777776666666666666666666666655443211 223445555555555555
Q ss_pred cchh-hcCCCCCCcEEEccCCCCCCCc--CcCC------------------------CCCCcEEECCCCCcccccc-ccc
Q 002227 182 IMDE-SLQLLPAVETLDLSRNKFAKVD--NLRK------------------------CVNLKHLDLGFNNLRSIAA-FSE 233 (950)
Q Consensus 182 ~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~------------------------L~~L~~LdLS~N~L~~L~~-l~~ 233 (950)
.+|. .+..+++|+.|+|++|.+..++ .|.. ..+|+.|+|++|.|+.++. .+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 4443 3455555555555555544432 2333 3366667777777777663 345
Q ss_pred cccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCC
Q 002227 234 VSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (950)
Q Consensus 234 ~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~ 311 (950)
.+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.|+..+ ...|..++.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~ 321 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGN 321 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGG
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeC---HhHcCCCcc
Confidence 6788999999999988875 57888999999999999988764 67889999999999999998665 345677888
Q ss_pred CcccccCCCcCChhHHH
Q 002227 312 PAKLKVDGKEISTRELW 328 (950)
Q Consensus 312 L~~L~LdgN~Is~~e~~ 328 (950)
|+.+.|++|++.+....
T Consensus 322 L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 322 LETLILDSNPLACDCRL 338 (477)
T ss_dssp CCEEECCSSCEECSGGG
T ss_pred cCEEEccCCCccCccch
Confidence 99999999999887644
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.3e-23 Score=240.85 Aligned_cols=226 Identities=16% Similarity=0.188 Sum_probs=118.0
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
++|+.|+|++|.|.+..|..|..+++|++|+|++|.|++..|..|..+++|..+.+.+|.+..++... +..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA---------FEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT---------SSS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh---------hcc
Confidence 35555555555555555555555555555555555555555555555555555555555544433211 123
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEEccC-CCCCCCc--CcCCCCCCcEEECCCCCccccccccccccceeEEE
Q 002227 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~ 242 (950)
+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.|+.++.+ ..+++|+.|+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 224 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELE 224 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC-TTCTTCCEEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccc-cccccccEEE
Confidence 4455555555555555543 455555555555555 3343332 355555555555555555555432 2335555555
Q ss_pred ecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCC
Q 002227 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (950)
Q Consensus 243 Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN 320 (950)
|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.|+.++|++|
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSS
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCC
Confidence 5555555542 45555555555555555555443 44555555555555555555333 123444555555555555
Q ss_pred cCChhH
Q 002227 321 EISTRE 326 (950)
Q Consensus 321 ~Is~~e 326 (950)
++.|..
T Consensus 301 p~~CdC 306 (452)
T 3zyi_A 301 PWNCDC 306 (452)
T ss_dssp CEECST
T ss_pred CcCCCC
Confidence 555544
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=240.30 Aligned_cols=226 Identities=17% Similarity=0.206 Sum_probs=124.6
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
++|+.|+|++|.|....+..|..+++|++|+|++|.|+...+..|..+++|..|.+.+|.+..++... +..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA---------FVY 134 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT---------SCS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH---------hhc
Confidence 45555555555555555555555555666666655555555555555555555555555554443211 123
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEEccC-CCCCCCc--CcCCCCCCcEEECCCCCccccccccccccceeEEE
Q 002227 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~ 242 (950)
+++|+.|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.|+.++.+ ..+++|+.|+
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 213 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-TPLIKLDELD 213 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC-TTCSSCCEEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc-CCCcccCEEE
Confidence 4556666666666665544 455566666666665 3343332 355556666666666666655542 3345566666
Q ss_pred ecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCC
Q 002227 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (950)
Q Consensus 243 Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN 320 (950)
|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|+.++|++|
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECCSS
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcCCC
Confidence 6666665542 55556666666666666665543 44555666666666666665443 233445555666666666
Q ss_pred cCChhH
Q 002227 321 EISTRE 326 (950)
Q Consensus 321 ~Is~~e 326 (950)
++.|..
T Consensus 290 p~~CdC 295 (440)
T 3zyj_A 290 PWNCNC 295 (440)
T ss_dssp CEECSS
T ss_pred CccCCC
Confidence 665544
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=238.33 Aligned_cols=289 Identities=20% Similarity=0.233 Sum_probs=222.7
Q ss_pred ccccCCcEEEecCCCccch-hhhhhhccccccccCC-CCccc---------cccccccCCCCccchhHHHHhcCCCCCcE
Q 002227 23 PLIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (950)
Q Consensus 23 slL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~ 91 (950)
.-+..++.|+|..+.+..+ |..+..+++|+.|... ..+.. -.+..+++++|......+..|..+++|+.
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 3356788999999998887 6667777777765542 11111 12345677777766666677788888888
Q ss_pred EEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCcc
Q 002227 92 VSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLS 171 (950)
Q Consensus 92 LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~ 171 (950)
|+|++|.+....|..|..+++|+.|+|++|.+++..+..+..++.|..+.+.+|.+..+... .+..+++|+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~---------~~~~l~~L~ 203 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY---------SFKRLYRLK 203 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT---------CSCSCTTCC
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh---------hcccCcccc
Confidence 88888888777777888888888888888888876667778888888888888876665432 234677899
Q ss_pred EEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCC
Q 002227 172 FVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNA 247 (950)
Q Consensus 172 ~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~ 247 (950)
.|++++|.+. .+|..+....+|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 9999987654 77776667779999999999999987 68899999999999999998875 45567999999999999
Q ss_pred CCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 248 Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
|+.+. .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+... .. +.....+.+.++.+.|.
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~~-~~---~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRLL-WV---FRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGGH-HH---HTTTTSSCCTTCCCBEE
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCccCccchH-hH---HhhhhccccCccCceeC
Confidence 99973 78899999999999999999886 67889999999999999999997532 11 22233345555555543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.9e-22 Score=221.61 Aligned_cols=218 Identities=16% Similarity=0.218 Sum_probs=100.2
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
+..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|..+.+.+|.+..+..
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------- 194 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP---------- 194 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----------
T ss_pred hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----------
Confidence 4445555555555443332222 24445555555555555443222 4444444445554444433322
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEE
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~ 242 (950)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|+|++|.++.++. ...+++|+.|+
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 271 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLN 271 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred -ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChh-HhcCCCcCEEE
Confidence 1133445555555555544433 44445555555555555544444445555555555555544422 22334555555
Q ss_pred ecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcC
Q 002227 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (950)
Q Consensus 243 Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~I 322 (950)
+++|.|+.++.+..+++|+.|+|++|.++..++ ..+..+++|+.|+|++|+++..+. +..++.|+.+++.+|++
T Consensus 272 l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 272 VGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC--
T ss_pred ccCCccCCChhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhcc
Confidence 555555554444445555555555555544332 334445555555555555543321 33444455555555544
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.5e-23 Score=256.43 Aligned_cols=247 Identities=21% Similarity=0.168 Sum_probs=199.6
Q ss_pred cccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 002227 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (950)
Q Consensus 65 l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~ 144 (950)
+..+++++|...+.+|..+..+++|+.|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+..++.|..+.+.+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 44566777776667788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCccchhhhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCC-Cc-CcCCCCCCcEEECC
Q 002227 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLG 221 (950)
Q Consensus 145 N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~L~~L~~LdLS 221 (950)
|.+...... .+..+++|+.|++++|+++ .+|..++.+++|+.|+|++|++.+ +| .+..+++|+.|+|+
T Consensus 476 N~l~~~~p~---------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 476 NDLTGEIPS---------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp SCCCSCCCG---------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CcccCcCCH---------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 876632211 1235678999999999998 788899999999999999999985 34 78889999999999
Q ss_pred CCCccc-cccc---------------------------------------------------------------------
Q 002227 222 FNNLRS-IAAF--------------------------------------------------------------------- 231 (950)
Q Consensus 222 ~N~L~~-L~~l--------------------------------------------------------------------- 231 (950)
+|.+.+ +|..
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 998873 3321
Q ss_pred -cccccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhc
Q 002227 232 -SEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (950)
Q Consensus 232 -~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~ 308 (950)
+..++.|+.|+|++|++++ +| .++.++.|+.|+|++|.|++..+ ..++.+++|+.|+|++|.++... +..+..
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~i---p~~l~~ 702 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRI---PQAMSA 702 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECC---CGGGGG
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcC---ChHHhC
Confidence 1124678899999999986 45 78999999999999999996443 67899999999999999998553 255778
Q ss_pred cCCCcccccCCCcCCh
Q 002227 309 FAHPAKLKVDGKEIST 324 (950)
Q Consensus 309 L~~L~~L~LdgN~Is~ 324 (950)
++.|+.++|++|+++.
T Consensus 703 l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCCSEEECCSSEEEE
T ss_pred CCCCCEEECcCCcccc
Confidence 8999999999998874
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=6.1e-23 Score=238.00 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=133.1
Q ss_pred CCCCCccEEEccCCcCcc-chhhcCCCCCCcEEEccCCCCCCCc----CcCCCCCCcEEECCCCCccc-cccc-cccccc
Q 002227 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAAF-SEVSCH 237 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~-LP~sL~~L~~L~~LdLS~N~Lt~l~----~L~~L~~L~~LdLS~N~L~~-L~~l-~~~L~~ 237 (950)
..+++|++|++++|.++. +|..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.+.. ++.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467889999999999985 7788899999999999999999753 47889999999999999998 7753 556789
Q ss_pred eeEEEecCCCCCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCccc
Q 002227 238 IVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (950)
Q Consensus 238 L~~L~Ls~N~Ls~L-p-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L 315 (950)
|+.|+|++|+++.. + .+. ++|+.|+|++|+|+.+| ..+..+++|+.|+|++|+|+..+. ..+..++.|+.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCcccEE
Confidence 99999999999763 3 332 78999999999999987 445699999999999999996653 347788999999
Q ss_pred ccCCCcCChhHHHHH
Q 002227 316 KVDGKEISTRELWER 330 (950)
Q Consensus 316 ~LdgN~Is~~e~~~~ 330 (950)
+|++|++.+.....+
T Consensus 474 ~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 474 WLHTNPWDCSCPRID 488 (520)
T ss_dssp ECCSSCBCCCHHHHH
T ss_pred ECcCCCCcccCCchH
Confidence 999999998765433
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=6.9e-23 Score=241.75 Aligned_cols=288 Identities=18% Similarity=0.151 Sum_probs=222.9
Q ss_pred CCcEEEecCCCccchhhh-hhhccccccccC-CCCcccc--------ccccccCCCCccchhHHHHhcCCCCCcEEEccC
Q 002227 27 GSIVLKLNPAGLHYVQSR-LEALRELERLLA-GAPLDYL--------RAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (950)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~~-~~~L~~L--------~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~ 96 (950)
.++.|++..+.+..++.. +..+++|+.+.. +..+..+ .+..+++++|......|..+..+++|+.|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 455666666666666543 444444444332 1111111 234567777776666677888899999999999
Q ss_pred CCCCCCCCc-cCCCCCCCcEEEeeCCCCCccc--hhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEE
Q 002227 97 PPARDPTPL-SLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (950)
Q Consensus 97 N~L~~~iP~-sL~~L~nL~~LdLS~N~Ls~~l--P~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L 173 (950)
|.+.+.+|. .|..+++|++|+|++|.+++.. |..+..+++|..+.+.+|.+..+... .+..+++|+.|
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L 405 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---------AFKECPQLELL 405 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---------TTTTCTTCSEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---------HhcCCccCCeE
Confidence 988765554 4888999999999999998765 77888888999999988876655321 23467899999
Q ss_pred EccCCcCccc-hh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccc--c--cccccccceeEEEecC
Q 002227 174 SCSCNRLVIM-DE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI--A--AFSEVSCHIVKLVLRN 245 (950)
Q Consensus 174 ~Ls~N~Lt~L-P~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L--~--~l~~~L~~L~~L~Ls~ 245 (950)
++++|.+... |. .+..+++|+.|++++|.+...+ .+..+++|+.|+|++|.+.+. + ..+..+++|+.|+|++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 9999999854 33 4889999999999999998753 688899999999999999863 2 3455678999999999
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
|.++.++ .+..+++|+.|+|++|+|++.++ ..+..++.| .|+|++|.++..+ ...+..++.|+.++|++|++.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIIL---PSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCC---GGGHHHHHTSSEEECTTCCEE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCCh-hHhCccccc-EEECcCCcccccC---HhhcccCCCCCEEeCCCCCcc
Confidence 9999863 78999999999999999998765 788999999 9999999999664 345677889999999999999
Q ss_pred hhHHH
Q 002227 324 TRELW 328 (950)
Q Consensus 324 ~~e~~ 328 (950)
+....
T Consensus 561 c~c~~ 565 (606)
T 3t6q_A 561 CTCSN 565 (606)
T ss_dssp CSGGG
T ss_pred ccCCc
Confidence 86643
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.3e-23 Score=251.84 Aligned_cols=242 Identities=17% Similarity=0.191 Sum_probs=203.2
Q ss_pred CccchhHHHHhcCCCCCcEEEccCCCCCCC-----------------CCccCC--CCCCCcEEEeeCCCCCccchhhHHh
Q 002227 73 HRALEQLRRILKLLTSLKVVSALPPPARDP-----------------TPLSLL--PFCRLKVLELRGCDLSTSAAKGLLE 133 (950)
Q Consensus 73 n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~-----------------iP~sL~--~L~nL~~LdLS~N~Ls~~lP~sL~~ 133 (950)
|+..+ +|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..+..
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34444 899999999999999999999985 899999 9999999999999999999999999
Q ss_pred hhhhhhhhhccCC-Ccc--chhhhccccccccCCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEEccCCCCC-CCc
Q 002227 134 LRHTLEKIICHNS-TNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFA-KVD 207 (950)
Q Consensus 134 L~~Ll~LlL~~N~-L~s--L~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt-~l~ 207 (950)
+++|..+.+.+|. +.. ++..+. .+..+..+++|++|++++|.++.+|. .+..+++|+.|+|++|.++ .+|
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~----~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQ----ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHH----HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCCEEECcCCCCCccccchHHHH----hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 9999999999997 764 443321 11122345789999999999999998 8999999999999999999 678
Q ss_pred CcCCCCCCcEEECCCCCccccccccccccc-eeEEEecCCCCCCcc-cCCCC--CCCCEEEccCCCCCCCchhhhcC---
Q 002227 208 NLRKCVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIENL--KSLEGLDISYNIISTFSELEFLA--- 280 (950)
Q Consensus 208 ~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~-L~~L~Ls~N~Ls~Lp-~L~~L--~sL~~LdLs~N~Ls~l~~l~~L~--- 280 (950)
.+..+++|+.|+|++|.++.+|..+..+++ |+.|+|++|.|+.+| .+..+ ++|+.|+|++|.|++..+ ..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~ 426 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG-KNFDPLD 426 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT-CSSCTTC
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch-hhhcccc
Confidence 888889999999999999988877777788 999999999999887 44444 489999999999988543 4455
Q ss_pred ----CCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 281 ----SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 281 ----~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
.+++|+.|+|++|.++..+ ...+..++.|+.|+|++|.++
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp---~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFP---KELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCC---THHHHTTCCCSEEECCSSCCS
T ss_pred cccccCCCCCEEECcCCccCcCC---HHHHccCCCCCEEECCCCCCC
Confidence 6779999999999998544 455667888999999999886
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.1e-22 Score=222.71 Aligned_cols=267 Identities=17% Similarity=0.170 Sum_probs=171.6
Q ss_pred CCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 002227 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (950)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~s 106 (950)
..+.+++...++..+|..+. +. +..+++++|...+..+..|.++++|++|+|++|.+.+..|..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~--------------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PD--------------TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TT--------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC--CC--------------CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 45678888888877775432 11 223556666544433446778888888888888888777888
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCc---cc
Q 002227 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (950)
Q Consensus 107 L~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt---~L 183 (950)
|..+++|++|+|++|.++. +|..+. +.|..+.+.+|.+..+....+ ..+++|+.|++++|.+. ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF---------NGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp TTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH---------TTCTTCCEEECCSSCCCGGGBC
T ss_pred hcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh---------cCCccccEEECCCCcCCccCcC
Confidence 8888888888888888774 444433 566777777777665544221 24567777777777775 33
Q ss_pred hhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCcc--cCCCCCCC
Q 002227 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (950)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL 260 (950)
+..+..+++|+.|++++|.++.++... .++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 456667777777777777777665221 267777777777777653 34445667777777777777653 46667777
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchh---HhhccCCCcccccCCCcCCh
Q 002227 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQ---VFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 261 ~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~---~~~~L~~L~~L~LdgN~Is~ 324 (950)
+.|+|++|.|+.++ ..+..+++|+.|+|++|+|+..+..... .......+..+.|.+|++..
T Consensus 243 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 RELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 77777777777665 3466777777777777777655321100 00123456667777777654
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=5.3e-23 Score=234.91 Aligned_cols=226 Identities=19% Similarity=0.233 Sum_probs=200.2
Q ss_pred ccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 002227 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (950)
Q Consensus 66 ~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N 145 (950)
..++|++|......+..|.++++|+.|+|++|.|....+..|..+++|++|+|++|.|+...+..|..+++|..+.+.+|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 44677888766555678999999999999999999888899999999999999999999877778999999999999999
Q ss_pred CCccchhhhccccccccCCCCCCCccEEEccC-CcCccchh-hcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCC
Q 002227 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFN 223 (950)
Q Consensus 146 ~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N 223 (950)
.+..++... +..+++|+.|++++ |.+..++. .|..+++|+.|+|++|.|+.++.+..+++|+.|+|++|
T Consensus 147 ~i~~~~~~~---------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 147 PIESIPSYA---------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCCEECTTT---------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred cccccCHHH---------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 888766432 34678999999998 56777766 68899999999999999999999999999999999999
Q ss_pred Cccccc-cccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 224 NLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 224 ~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
.|+.++ ..+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|.|.
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEEECCSSCEECSST
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHhccccCCCEEEcCCCCccCCCC
Confidence 999885 45667899999999999999974 78899999999999999999885 678899999999999999999985
Q ss_pred c
Q 002227 301 Y 301 (950)
Q Consensus 301 ~ 301 (950)
.
T Consensus 297 l 297 (440)
T 3zyj_A 297 I 297 (440)
T ss_dssp T
T ss_pred c
Confidence 4
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.2e-22 Score=236.53 Aligned_cols=298 Identities=19% Similarity=0.193 Sum_probs=186.3
Q ss_pred cccCCcEEEecCCCccchh-hhhhhccccccccCC-CCccc---------cccccccCCCCccchhHHHHhcCCCCCcEE
Q 002227 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~L 92 (950)
+...++.|++..+.+..++ ..+..++.|+.|... ..+.. -.+..+++++|...+..|..|+++++|++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3456788888888887763 456666666665431 11111 124467788887666667778888888888
Q ss_pred EccCCCCCC-CCCccCCCCCCCcEEEeeCCCCCccc-hhhHHhhhhhhhhhhccCCCccch-------------------
Q 002227 93 SALPPPARD-PTPLSLLPFCRLKVLELRGCDLSTSA-AKGLLELRHTLEKIICHNSTNALR------------------- 151 (950)
Q Consensus 93 dLs~N~L~~-~iP~sL~~L~nL~~LdLS~N~Ls~~l-P~sL~~L~~Ll~LlL~~N~L~sL~------------------- 151 (950)
+|++|.+.+ ..|..|..+++|++|+|++|.+.+.+ +..+..+++|..+.+.+|.+....
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 888888875 34566777777777777777633323 234555555555554444433210
Q ss_pred -----hhhcc-------------cccc-----------------------------------------------------
Q 002227 152 -----HVFAS-------------RIVE----------------------------------------------------- 160 (950)
Q Consensus 152 -----~l~~~-------------~i~~----------------------------------------------------- 160 (950)
..+.. .+..
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 00000 0000
Q ss_pred ----------------cc------------------------------------------CC-----CCCCCccEEEccC
Q 002227 161 ----------------IK------------------------------------------DS-----PQWNRLSFVSCSC 177 (950)
Q Consensus 161 ----------------L~------------------------------------------~L-----~~L~~L~~L~Ls~ 177 (950)
++ .+ ..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 00 00 1245666666666
Q ss_pred CcCcc-chh---hcCCCCCCcEEEccCCCCCCCc----CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCC
Q 002227 178 NRLVI-MDE---SLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249 (950)
Q Consensus 178 N~Lt~-LP~---sL~~L~~L~~LdLS~N~Lt~l~----~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls 249 (950)
|.++. +|. .+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|+|+.+|.....+++|+.|+|++|.|+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 66653 222 2456666777777777666653 266667777777777777766665555566666666666665
Q ss_pred Cccc-------------------CCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccC
Q 002227 250 TLRG-------------------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (950)
Q Consensus 250 ~Lp~-------------------L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~ 310 (950)
.++. +..+++|+.|+|++|+|+.+|. ...+++|+.|+|++|+++..+ ...+..++
T Consensus 424 ~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~ 497 (549)
T 2z81_A 424 VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP---DGIFDRLT 497 (549)
T ss_dssp CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC---TTGGGGCT
T ss_pred cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC---HHHHhcCc
Confidence 5431 1257788888888888887764 356788899999999888654 34567888
Q ss_pred CCcccccCCCcCChhHH
Q 002227 311 HPAKLKVDGKEISTREL 327 (950)
Q Consensus 311 ~L~~L~LdgN~Is~~e~ 327 (950)
.|+.++|++|++.+...
T Consensus 498 ~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred ccCEEEecCCCccCCCc
Confidence 99999999999998765
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=6.2e-23 Score=235.15 Aligned_cols=227 Identities=19% Similarity=0.202 Sum_probs=201.4
Q ss_pred cccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 002227 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (950)
Q Consensus 65 l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~ 144 (950)
+..++|++|......+..|.++++|+.|+|++|.|.+..|..|..+++|++|+|++|.|+...+..+..+++|..+.+.+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 34577888876666678899999999999999999998899999999999999999999987777899999999999999
Q ss_pred CCCccchhhhccccccccCCCCCCCccEEEccC-CcCccchh-hcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCC
Q 002227 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGF 222 (950)
Q Consensus 145 N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~ 222 (950)
|.+..++... +..+++|+.|++++ |.+..++. .|..+++|+.|+|++|.++.++.+..+++|+.|+|++
T Consensus 157 N~l~~~~~~~---------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 157 NPIESIPSYA---------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCCCEECTTT---------TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CCcceeCHhH---------HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 9888766432 34678999999998 67777766 6889999999999999999999999999999999999
Q ss_pred CCccccc-cccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 223 NNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 223 N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
|.|+.++ ..+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|.+
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEECST
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcCCCC
Confidence 9999875 45667899999999999999873 78999999999999999999875 66889999999999999999998
Q ss_pred cc
Q 002227 300 WY 301 (950)
Q Consensus 300 ~~ 301 (950)
..
T Consensus 307 ~~ 308 (452)
T 3zyi_A 307 DI 308 (452)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=4.9e-24 Score=233.45 Aligned_cols=245 Identities=18% Similarity=0.156 Sum_probs=207.2
Q ss_pred ccccccCCCCccch--hHHHHhcCCCCCcEEEccC-CCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhh
Q 002227 64 RAYVSDLGDHRALE--QLRRILKLLTSLKVVSALP-PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEK 140 (950)
Q Consensus 64 ~l~vLdLs~n~~l~--~Lp~~L~~L~~L~~LdLs~-N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~L 140 (950)
++..++++++...+ .+|..+.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|.+++.+|..+..+++|..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34557778887766 7889999999999999995 99999999999999999999999999998999999999999999
Q ss_pred hhccCCCcc-chhhhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCCC-CCcEEEccCCCCCC-Cc-CcCCCCCC
Q 002227 141 IICHNSTNA-LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLP-AVETLDLSRNKFAK-VD-NLRKCVNL 215 (950)
Q Consensus 141 lL~~N~L~s-L~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~-~L~~LdLS~N~Lt~-l~-~L~~L~~L 215 (950)
.+.+|.+.. ++.. +..+++|++|++++|.++ .+|..+..++ +|+.|+|++|+++. ++ .+..+. |
T Consensus 131 ~Ls~N~l~~~~p~~----------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPS----------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ECCSSEEESCCCGG----------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred eCCCCccCCcCChH----------HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 999998763 3322 235679999999999999 8899999998 99999999999984 33 677776 9
Q ss_pred cEEECCCCCcccc-ccccccccceeEEEecCCCCCCc-ccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCC
Q 002227 216 KHLDLGFNNLRSI-AAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (950)
Q Consensus 216 ~~LdLS~N~L~~L-~~l~~~L~~L~~L~Ls~N~Ls~L-p~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgN 293 (950)
+.|+|++|.+... +..+..+++|+.|+|++|.++.. +.+..+++|++|+|++|.|++..+ ..+..+++|+.|+|++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC-hHHhcCcCCCEEECcCC
Confidence 9999999999865 44566789999999999999874 578889999999999999984333 67889999999999999
Q ss_pred CCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 294 PLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 294 pLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
+++.... . ...++.|+.+.+.+|+.-+
T Consensus 279 ~l~~~ip---~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 279 NLCGEIP---Q-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEEECC---C-STTGGGSCGGGTCSSSEEE
T ss_pred cccccCC---C-CccccccChHHhcCCCCcc
Confidence 9985421 1 2567889999999998543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2e-23 Score=250.28 Aligned_cols=230 Identities=16% Similarity=0.200 Sum_probs=169.3
Q ss_pred HHHHhc--CCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCC-CCc-cchhhHHhh------hhhhhhhhccCCCc
Q 002227 79 LRRILK--LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST-SAAKGLLEL------RHTLEKIICHNSTN 148 (950)
Q Consensus 79 Lp~~L~--~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~-Ls~-~lP~sL~~L------~~Ll~LlL~~N~L~ 148 (950)
+|..++ ++++|++|+|++|.+.+.+|..|.++++|++|+|++|. +++ .+|..+..+ ++|..+.+.+|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899988 99999999999999999999999999999999999998 998 899999987 89999999999887
Q ss_pred cchh--hhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCC-CcEEECCCC
Q 002227 149 ALRH--VFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVN-LKHLDLGFN 223 (950)
Q Consensus 149 sL~~--l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~-L~~LdLS~N 223 (950)
.++. .+ ..+++|+.|++++|.++ .+| .+..+++|+.|+|++|.++.+| .+..+++ |+.|+|++|
T Consensus 319 ~ip~~~~l----------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 319 TFPVETSL----------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp SCCCHHHH----------TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred ccCchhhh----------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence 6654 22 34567777777777777 776 6777777777777777777654 5666676 777777777
Q ss_pred Cccccccccccc--cceeEEEecCCCCCCc-c-cCC-------CCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecC
Q 002227 224 NLRSIAAFSEVS--CHIVKLVLRNNALTTL-R-GIE-------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (950)
Q Consensus 224 ~L~~L~~l~~~L--~~L~~L~Ls~N~Ls~L-p-~L~-------~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~Lsg 292 (950)
.++.+|..+..+ ++|+.|+|++|.|++. | .+. .+++|+.|+|++|.|+.++. ..+..+++|+.|+|++
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCS
T ss_pred cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCC
Confidence 777766544432 3677777777777663 2 444 55677777777777776654 4455667777777777
Q ss_pred CCCCCCcccchhHhhc-------cCCCcccccCCCcCC
Q 002227 293 NPLCCSRWYRAQVFSY-------FAHPAKLKVDGKEIS 323 (950)
Q Consensus 293 NpLt~~~~~r~~~~~~-------L~~L~~L~LdgN~Is 323 (950)
|.++..+. ..+.. ++.|+.|+|++|.++
T Consensus 467 N~l~~i~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 467 NMLTEIPK---NSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCCSBCCS---SSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred CCCCCcCH---HHhccccccccccCCccEEECcCCcCC
Confidence 77764331 11221 125667777777665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.2e-22 Score=251.94 Aligned_cols=240 Identities=18% Similarity=0.172 Sum_probs=203.0
Q ss_pred hhHHHHhcCCCCCcEEEccCCCCCC-----------------CCCccCC--CCCCCcEEEeeCCCCCccchhhHHhhhhh
Q 002227 77 EQLRRILKLLTSLKVVSALPPPARD-----------------PTPLSLL--PFCRLKVLELRGCDLSTSAAKGLLELRHT 137 (950)
Q Consensus 77 ~~Lp~~L~~L~~L~~LdLs~N~L~~-----------------~iP~sL~--~L~nL~~LdLS~N~Ls~~lP~sL~~L~~L 137 (950)
..+|..|+++++|+.|+|++|.+++ .+|..++ .+++|++|+|++|.+.+.+|..+..+++|
T Consensus 438 ~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 3389999999999999999999998 3899988 99999999999999999999999999999
Q ss_pred hhhhhccCC-Ccc--chhhhcccccccc-CCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEEccCCCCCCCcCcCC
Q 002227 138 LEKIICHNS-TNA--LRHVFASRIVEIK-DSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVDNLRK 211 (950)
Q Consensus 138 l~LlL~~N~-L~s--L~~l~~~~i~~L~-~L~~L~~L~~L~Ls~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l~~L~~ 211 (950)
..+.+.+|. +.. ++..+ ..+. .+..+++|+.|+|++|.|+.+|. .+..+++|+.|+|++|.++.+|.|..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i----~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADW----TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHH----HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCT
T ss_pred CEEECcCCCCcccccchHHH----HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcC
Confidence 999999997 664 44332 2222 44567899999999999999998 89999999999999999998889999
Q ss_pred CCCCcEEECCCCCccccccccccccc-eeEEEecCCCCCCcc-cCCCCC--CCCEEEccCCCCCCCch-h-hhcC--CCC
Q 002227 212 CVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIENLK--SLEGLDISYNIISTFSE-L-EFLA--SLP 283 (950)
Q Consensus 212 L~~L~~LdLS~N~L~~L~~l~~~L~~-L~~L~Ls~N~Ls~Lp-~L~~L~--sL~~LdLs~N~Ls~l~~-l-~~L~--~L~ 283 (950)
+++|+.|+|++|.|..+|..+..+++ |+.|+|++|.|+.+| .+..++ +|+.|+|++|.|.+..+ + ..+. .++
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999999988877777788 999999999999887 445444 49999999999987432 1 1122 445
Q ss_pred CCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 284 YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 284 ~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
+|+.|+|++|.+...+ ...+..++.|+.|.|++|.++
T Consensus 674 ~L~~L~Ls~N~L~~lp---~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFP---TELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CEEEEECCSSCCCSCC---HHHHHTTCCCSEEECCSCCCS
T ss_pred CcCEEEccCCcCCccC---HHHHccCCCCCEEECCCCcCC
Confidence 8999999999998544 455667889999999999886
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.1e-22 Score=231.30 Aligned_cols=276 Identities=20% Similarity=0.221 Sum_probs=210.7
Q ss_pred cccCCcEEEecCCCcc-ch-hhhhhhccccccccCC-CCccc---------cccccccCCCCccchhHHHH--hcCCCCC
Q 002227 24 LIEGSIVLKLNPAGLH-YV-QSRLEALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRI--LKLLTSL 89 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~-~L-p~~L~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~--L~~L~~L 89 (950)
-+..++.|++..+.+. .+ +..+..+++|+.|... ..+.. -.+..+++++|...+.++.. +..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 3556788888887764 44 4456666666665442 11111 12446788888877767765 8999999
Q ss_pred cEEEccCCCCCCCCCcc-CCCCCCCcEEEeeCCCCCccchhhHHhh----------------------------------
Q 002227 90 KVVSALPPPARDPTPLS-LLPFCRLKVLELRGCDLSTSAAKGLLEL---------------------------------- 134 (950)
Q Consensus 90 ~~LdLs~N~L~~~iP~s-L~~L~nL~~LdLS~N~Ls~~lP~sL~~L---------------------------------- 134 (950)
+.|+|++|.+.+..|.. |..+++|++|+|++|.+++..|..+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999887876 8899999999999999998777766655
Q ss_pred hhhhhhhhccCCCccchhh-hcc-----ccccc--------------------c--CCC--CCCCccEEEccCCcCccc-
Q 002227 135 RHTLEKIICHNSTNALRHV-FAS-----RIVEI--------------------K--DSP--QWNRLSFVSCSCNRLVIM- 183 (950)
Q Consensus 135 ~~Ll~LlL~~N~L~sL~~l-~~~-----~i~~L--------------------~--~L~--~L~~L~~L~Ls~N~Lt~L- 183 (950)
+.|..+.+.+|.+...... +.. .+..+ . .+. ..++|+.|++++|.+..+
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 4566666666655432111 100 00000 0 000 236899999999999955
Q ss_pred hhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCc-c-cCCCCC
Q 002227 184 DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL-R-GIENLK 258 (950)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~L-p-~L~~L~ 258 (950)
|..+..+++|+.|+|++|.+..++ .|..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|+|+.+ + .+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 667999999999999999999863 7889999999999999999875 4556789999999999999987 3 789999
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 259 sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
+|++|+|++|+|+.++. ..+..+++|+.|+|++|+++|.+.
T Consensus 372 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 372 NLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999875 567899999999999999999874
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.2e-22 Score=230.14 Aligned_cols=270 Identities=23% Similarity=0.267 Sum_probs=171.6
Q ss_pred ccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 002227 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP 104 (950)
+..++.|.+..+.+..+|. +..++.|+. +++++|.. ..++. +..+++|++|+|++|.+.+..|
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~--------------L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQ--------------INFSNNQL-TDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCE--------------EECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCE--------------EECCCCcc-CCchh-hhccccCCEEECCCCccccChh
Confidence 4678899999998888773 555554443 34444432 22333 6667777777777776665443
Q ss_pred ccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhh----------ccccccccCCCCCCCccEEE
Q 002227 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF----------ASRIVEIKDSPQWNRLSFVS 174 (950)
Q Consensus 105 ~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~----------~~~i~~L~~L~~L~~L~~L~ 174 (950)
+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++.+. .+.+..+..+..+++|+.|+
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred --hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 6666777777777776665332 666666666666666555443210 00111222345667777788
Q ss_pred ccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccC
Q 002227 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (950)
Q Consensus 175 Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L 254 (950)
+++|.++.++ .+..+++|+.|++++|.+..++.+..+++|+.|+|++|.+..++. ...+++|+.|+|++|.++.++.+
T Consensus 184 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG
T ss_pred CcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCCccccchhh
Confidence 8777777664 466777777777777777776556667777777777777776643 33456777777777777776666
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 255 ~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
..+++|+.|+|++|.++.+++ +..+++|+.|+|++|.+...+. +..++.|+.|+|++|.++..
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCC
T ss_pred hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCc
Confidence 677777777777777776653 5666777777777777665432 44566677777777766644
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=4.5e-22 Score=234.76 Aligned_cols=270 Identities=18% Similarity=0.158 Sum_probs=150.7
Q ss_pred ccCCcEEEecCCCccch-hhhhhhccccccccCC-CCccc---------cccccccCCCCccchhHHHHhcCCCCCcEEE
Q 002227 25 IEGSIVLKLNPAGLHYV-QSRLEALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~Ld 93 (950)
+..+++|++..+.+..+ |..+..+++|+.|... ..+.. -.+..+++++|......+..+.++++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 34455555555555544 3344444444443331 11111 1123445555544333344566666666666
Q ss_pred ccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhh--hhhhccCCCccchhhhcc---------------
Q 002227 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL--EKIICHNSTNALRHVFAS--------------- 156 (950)
Q Consensus 94 Ls~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll--~LlL~~N~L~sL~~l~~~--------------- 156 (950)
|++|.+.+..+..+..+++|++|+|++|.+++..|..+..++.+. .+.+.+|.+..+....+.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 666666654434444577777777777777776677777777766 566677765544321110
Q ss_pred -------------------------------------------------cccccc--CCCCCCCccEEEccCCcCccchh
Q 002227 157 -------------------------------------------------RIVEIK--DSPQWNRLSFVSCSCNRLVIMDE 185 (950)
Q Consensus 157 -------------------------------------------------~i~~L~--~L~~L~~L~~L~Ls~N~Lt~LP~ 185 (950)
.+..+. .+..+++|+.|++++|.++.+|.
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~ 295 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS 295 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh
Confidence 001111 14567788888888888888888
Q ss_pred hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcc-cccc-ccccccceeEEEecCCCCCCcc----cCCCC
Q 002227 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR-SIAA-FSEVSCHIVKLVLRNNALTTLR----GIENL 257 (950)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~-~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp----~L~~L 257 (950)
.+..+++|++|++++|.+..++ .+..+++|+.|+|++|.+. .++. .+..+++|+.|+|++|.++.+. .+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 8888888888888888887652 4556666666666666554 2322 2334455555555555555431 34455
Q ss_pred CCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCC
Q 002227 258 KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (950)
Q Consensus 258 ~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpL 295 (950)
++|+.|+|++|.+..+++ ..+..+++|+.|++++|.+
T Consensus 376 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp TTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCE
T ss_pred CCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcC
Confidence 555555555555544332 3344444444444444444
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.9e-22 Score=219.51 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=113.9
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..++..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~------------ 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM------------ 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC------------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh------------
Confidence 45555555555555544445555555555555555555554555555555555555555544433211
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCC----CcCcCCCCCCcEEECCCCCccccccccccccceeEE
Q 002227 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK----VDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~----l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L 241 (950)
.++|+.|++++|.++.++. .+..+++|+.|++++|.+.. ...+..+++|+.|++++|.++.++.... ++|+.|
T Consensus 120 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTEL 197 (330)
T ss_dssp CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEE
T ss_pred cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEE
Confidence 1355555555555554433 35555555555555555542 1244555555555555555555543221 455555
Q ss_pred EecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCC
Q 002227 242 VLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 242 ~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ldg 319 (950)
+|++|.++.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ..+..++.|+.++|++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp----~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVP----GGLADHKYIQVVYLHN 272 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCC----TTTTTCSSCCEEECCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCC----hhhccCCCcCEEECCC
Confidence 55555555541 45555555555555555555442 34455555555555555555333 1233445555555555
Q ss_pred CcCCh
Q 002227 320 KEIST 324 (950)
Q Consensus 320 N~Is~ 324 (950)
|+++.
T Consensus 273 N~i~~ 277 (330)
T 1xku_A 273 NNISA 277 (330)
T ss_dssp SCCCC
T ss_pred CcCCc
Confidence 55543
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.1e-22 Score=237.12 Aligned_cols=240 Identities=20% Similarity=0.173 Sum_probs=153.9
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEE----------------------------eeCCCCCccchhhHHhh
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLE----------------------------LRGCDLSTSAAKGLLEL 134 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~Ld----------------------------LS~N~Ls~~lP~sL~~L 134 (950)
|..+++|+.|+|++|.+.+..|..|..+++|++|+ |++|.+++..|..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 44555555555555555555554454444444444 34455555556667777
Q ss_pred hhhhhhhhccCCCcc-chhhhccc-------------cccc--cCCCCCCCccEEEccCCcCc---cchhhcCCCCCCcE
Q 002227 135 RHTLEKIICHNSTNA-LRHVFASR-------------IVEI--KDSPQWNRLSFVSCSCNRLV---IMDESLQLLPAVET 195 (950)
Q Consensus 135 ~~Ll~LlL~~N~L~s-L~~l~~~~-------------i~~L--~~L~~L~~L~~L~Ls~N~Lt---~LP~sL~~L~~L~~ 195 (950)
++|..+.+.+|.+.. ++...+.. +..+ ..+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 777777777776542 22111110 0010 12334567777777777664 45666777778888
Q ss_pred EEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc---------ccccccceeEEEecCCCCCCcc--cCCCCCCCCE
Q 002227 196 LDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA---------FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEG 262 (950)
Q Consensus 196 LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~---------l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~ 262 (950)
|+|++|+|+.++ .+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+|+.+| .+..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 888888877764 47777888888888887776532 1345677888888888888775 4777888888
Q ss_pred EEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhh-ccCCCcccccCCCcCChhH
Q 002227 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS-YFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 263 LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~-~L~~L~~L~LdgN~Is~~e 326 (950)
|+|++|+|+.+++ ..+..+++|+.|+|++|.++..+ ...+. .++.++.++|.+|++.|..
T Consensus 565 L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 565 IDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE---KKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC---HHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred eECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccC---hhHhcccccccCEEEccCCCcccCC
Confidence 8888888887765 55677788888888888877554 23344 5677788888888887754
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.7e-22 Score=221.83 Aligned_cols=262 Identities=17% Similarity=0.157 Sum_probs=158.1
Q ss_pred CCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 002227 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (950)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~s 106 (950)
.++.+++....+..+|..+. +. +..+++++|......|..|.++++|+.|+|++|.+++..|..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~--------------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PD--------------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC--CC--------------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 46788888888888775432 11 223455666544433556777777888888777777777777
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCc---cc
Q 002227 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (950)
Q Consensus 107 L~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt---~L 183 (950)
|..+++|++|+|++|.++. +|..+. +.|.++.+.+|.+..++... +..+++|+.|++++|.++ ..
T Consensus 98 ~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGV---------FSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp STTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGG---------GSSCSSCCEEECCSCCCBGGGSC
T ss_pred hhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhH---------hCCCccCCEEECCCCccccCCCC
Confidence 7777788888888777764 444333 56667777777666554321 124556777777777665 23
Q ss_pred hhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCcc--cCCCCCCC
Q 002227 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (950)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL 260 (950)
|..+..+ +|+.|++++|.++.++.-. .++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 3445555 6666666666666654211 156666666666666654 23444566666666666666653 45666666
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhh------ccCCCcccccCCCcCC
Q 002227 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS------YFAHPAKLKVDGKEIS 323 (950)
Q Consensus 261 ~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~------~L~~L~~L~LdgN~Is 323 (950)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|+..+. ..|. .+..++.+.|.+|++.
T Consensus 244 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 244 RELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccCh---hHccccccccccccccceEeecCccc
Confidence 66666666666655 335566666666666666654431 1111 1234556666666665
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.5e-22 Score=250.84 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=176.2
Q ss_pred hHHHHhc--CCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCC-CCc-cchhhHHhhh-------hhhhhhhccCC
Q 002227 78 QLRRILK--LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST-SAAKGLLELR-------HTLEKIICHNS 146 (950)
Q Consensus 78 ~Lp~~L~--~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~-Ls~-~lP~sL~~L~-------~Ll~LlL~~N~ 146 (950)
.+|..++ ++++|+.|+|++|.+.+.+|..|..+++|++|+|++|+ +++ .+|..+..+. +|..+.+.+|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 4888877 99999999999999999999999999999999999998 988 8999998887 89999999998
Q ss_pred Cccchh--hhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCC-CcEEECCC
Q 002227 147 TNALRH--VFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVN-LKHLDLGF 222 (950)
Q Consensus 147 L~sL~~--l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~-L~~LdLS~ 222 (950)
+..++. .+ ..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.+..+| .+..+++ |+.|+|++
T Consensus 560 L~~ip~~~~l----------~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 560 LEEFPASASL----------QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCBCCCHHHH----------TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred CCccCChhhh----------hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 876654 22 35668888888888888887 7788888888888888888765 6777777 88888888
Q ss_pred CCcccccccccccc--ceeEEEecCCCCCCc-ccCC------CCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCC
Q 002227 223 NNLRSIAAFSEVSC--HIVKLVLRNNALTTL-RGIE------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (950)
Q Consensus 223 N~L~~L~~l~~~L~--~L~~L~Ls~N~Ls~L-p~L~------~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgN 293 (950)
|.|+.+|..+..++ +|+.|+|++|.|++. |.+. .+++|+.|+|++|.|+.+|. ..+..+++|+.|+|++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCC
Confidence 88887776554433 388888888887663 3222 34577788888888877764 44557777888888888
Q ss_pred CCCCCcccchhHhh-------ccCCCcccccCCCcCC
Q 002227 294 PLCCSRWYRAQVFS-------YFAHPAKLKVDGKEIS 323 (950)
Q Consensus 294 pLt~~~~~r~~~~~-------~L~~L~~L~LdgN~Is 323 (950)
.|...+. ..+. .++.|+.|.|++|.++
T Consensus 708 ~L~~ip~---~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 708 LMTSIPE---NSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CCSCCCT---TSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred cCCccCh---HHhccccccccccCCccEEECCCCCCc
Confidence 7774432 1121 2236777777777775
No 28
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=8.1e-23 Score=223.69 Aligned_cols=236 Identities=17% Similarity=0.173 Sum_probs=197.6
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
..+++.+.....++..+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..+++|..+.+.+|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34666666555566677888899999999999998888899999999999999999987555 8888999999999997
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCC
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~ 224 (950)
+..++ ..++|+.|++++|.|+.++.. .+++|+.|++++|+++.++ .+..+++|+.|+|++|.
T Consensus 92 l~~l~--------------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 92 VQELL--------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EEEEE--------------ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred ccccc--------------CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 66554 236899999999999977643 4788999999999999874 67788999999999999
Q ss_pred ccccccc--cccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccc
Q 002227 225 LRSIAAF--SEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (950)
Q Consensus 225 L~~L~~l--~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r 302 (950)
|+.++.. ...+++|+.|+|++|.|+.++....+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+..+
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~--- 230 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE--- 230 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC---
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchh---
Confidence 9986532 23578999999999999998877779999999999999999874 4788999999999999998554
Q ss_pred hhHhhccCCCcccccCCCcCChhH
Q 002227 303 AQVFSYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 303 ~~~~~~L~~L~~L~LdgN~Is~~e 326 (950)
..+..++.|+.++|++|++.+..
T Consensus 231 -~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 231 -KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp -TTCCCCTTCCEEECTTCCCBHHH
T ss_pred -hHhhcCCCCCEEEccCCCccCcC
Confidence 23567889999999999999654
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.9e-22 Score=237.98 Aligned_cols=296 Identities=15% Similarity=0.089 Sum_probs=165.8
Q ss_pred cccCCcEEEecCCCccchhh-hhhhccccccccCC-CCccc---------cccccccCCCCccchhHHHHhcCCCCCcEE
Q 002227 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAG-APLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~~-~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~L 92 (950)
+...++.|++..+.+..++. .+..++.|+.+... ..+.. -.+..+++++|......|..|+++++|++|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 34556667777766666654 44555555554331 11111 123355666665544446666777777777
Q ss_pred EccCCCCCCCCCccCCCCCCCcEEEeeCCCCCc-cchhhHHhhhhhhhhhhccCCCccchhhhccccc------------
Q 002227 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICHNSTNALRHVFASRIV------------ 159 (950)
Q Consensus 93 dLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~-~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~------------ 159 (950)
+|++|.+.+..|..|+.+++|++|+|++|.+.+ .+|..+..+++|..+.+.+|.+..+....+..+.
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 777777666555666666666666666666654 3466666666666666666655433211000000
Q ss_pred --------------------------------------------------------------------------------
Q 002227 160 -------------------------------------------------------------------------------- 159 (950)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (950)
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence
Q ss_pred -------cccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc---------------------CcCC
Q 002227 160 -------EIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---------------------NLRK 211 (950)
Q Consensus 160 -------~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~---------------------~L~~ 211 (950)
.++.+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+| .+..
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhcc
Confidence 0000112334444444444444444 4444445555555555444333 3445
Q ss_pred CCCCcEEECCCCCcccc---ccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcE
Q 002227 212 CVNLKHLDLGFNNLRSI---AAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLN 287 (950)
Q Consensus 212 L~~L~~LdLS~N~L~~L---~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~ 287 (950)
+++|+.|+|++|.++.+ +..+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+...++...+..+++|+.
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 56666666666666654 333345567777777777776654 66677777777777777776654445667777777
Q ss_pred EEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 288 L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
|++++|.+.... ...+..++.|+.+.|++|.++
T Consensus 429 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 429 LDISYTNTKIDF---DGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp EECTTSCCEECC---TTTTTTCTTCCEEECTTCEEG
T ss_pred EECcCCCCCccc---hhhhcCCCCCCEEECCCCcCC
Confidence 777777765432 233555666667777776665
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=8.7e-24 Score=231.43 Aligned_cols=245 Identities=21% Similarity=0.177 Sum_probs=205.6
Q ss_pred CCcEEEecCCCcc---chhhhhhhccccccccCCCCccccccccccCCC-CccchhHHHHhcCCCCCcEEEccCCCCCCC
Q 002227 27 GSIVLKLNPAGLH---YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARDP 102 (950)
Q Consensus 27 ~l~~L~L~~~~L~---~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~-n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~ 102 (950)
..+.|++..+.+. .+|..+..++.|+. +++++ |...+.+|..|.++++|++|+|++|.+++.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~--------------L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNF--------------LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSE--------------EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCe--------------eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 4567888888887 47777666665443 44553 566667888999999999999999999999
Q ss_pred CCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCc-cchhhhccccccccCCCCCC-CccEEEccCCcC
Q 002227 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN-ALRHVFASRIVEIKDSPQWN-RLSFVSCSCNRL 180 (950)
Q Consensus 103 iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~-sL~~l~~~~i~~L~~L~~L~-~L~~L~Ls~N~L 180 (950)
+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+|.+. .++..+ ..++ +|+.|++++|.+
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----------GSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----------GCCCTTCCEEECCSSEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----------hhhhhcCcEEECcCCee
Confidence 9999999999999999999999889999999999999999999876 333322 2455 899999999999
Q ss_pred c-cchhhcCCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCC-cc-cCC
Q 002227 181 V-IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIE 255 (950)
Q Consensus 181 t-~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~ 255 (950)
+ .+|..+..+. |+.|+|++|.++.. ..+..+++|+.|+|++|.++..++....+++|+.|+|++|.|++ +| .+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 9 7888888887 99999999999864 36889999999999999999776666677999999999999984 55 789
Q ss_pred CCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 256 ~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
.+++|+.|+|++|.|++..+ ....+++|+.|++.+|+..|.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCC--CCccccccChHHhcCCCCccC
Confidence 99999999999999985332 247899999999999995444
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.4e-22 Score=247.63 Aligned_cols=245 Identities=18% Similarity=0.135 Sum_probs=201.1
Q ss_pred cccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 002227 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (950)
Q Consensus 65 l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~ 144 (950)
+..+++++|...+.+|..+..+++|+.|+|++|.+.+.+|..|..+++|++|+|++|.+++.+|..+..++.|..+.+.+
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 34567888887778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc-chhhhccccccccCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEEccCCCCCC-Cc--------------
Q 002227 145 NSTNA-LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-------------- 207 (950)
Q Consensus 145 N~L~s-L~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-------------- 207 (950)
|.+.. ++..+ ..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++ +|
T Consensus 500 N~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 500 NRLTGEIPKWI----------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp SCCCSCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CccCCcCChHH----------hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 98763 33222 34678999999999998 788899999999999999998763 21
Q ss_pred ---------------------------------------------------------CcCCCCCCcEEECCCCCccc-cc
Q 002227 208 ---------------------------------------------------------NLRKCVNLKHLDLGFNNLRS-IA 229 (950)
Q Consensus 208 ---------------------------------------------------------~L~~L~~L~~LdLS~N~L~~-L~ 229 (950)
.+..+++|+.|+|++|++++ +|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 23446789999999999995 66
Q ss_pred cccccccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhh
Q 002227 230 AFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS 307 (950)
Q Consensus 230 ~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~ 307 (950)
..+..++.|+.|+|++|.|++ +| .+..+++|+.|||++|++++..+ ..+..++.|+.|+|++|++++..+. ..
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~----~~ 724 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPE----MG 724 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCS----SS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccCCC----ch
Confidence 677788999999999999996 56 89999999999999999996544 6789999999999999999865321 11
Q ss_pred ccCCCcccccCCCcCCh
Q 002227 308 YFAHPAKLKVDGKEIST 324 (950)
Q Consensus 308 ~L~~L~~L~LdgN~Is~ 324 (950)
.+..+....+.||+--|
T Consensus 725 ~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SGGGSCGGGGCSCTEEE
T ss_pred hhccCCHHHhcCCchhc
Confidence 23334455666776443
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2e-22 Score=216.35 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=146.0
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-CccchhhhccccccccCC
Q 002227 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDS 164 (950)
Q Consensus 86 L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~-L~sL~~l~~~~i~~L~~L 164 (950)
.++|+.|+|++|.++...+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|. +..+... .+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~---------~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---------TF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---------TT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH---------Hh
Confidence 4567777777777776666667777777777777777776666666666666666665554 4433211 12
Q ss_pred CCCCCccEEEccCCcCccc-hhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccceeE
Q 002227 165 PQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVK 240 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~ 240 (950)
..+++|++|++++|.++.+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.|+.++. .+..+++|+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 3456788888888888766 446777888888888888887764 37777888888888888877765 3455678888
Q ss_pred EEecCCCCCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCccc
Q 002227 241 LVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (950)
Q Consensus 241 L~Ls~N~Ls~L-p-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~ 301 (950)
|+|++|.|+.+ + .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+..
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGGG
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCCc
Confidence 88888888775 3 67777888888888888887764 5577788888888888888777643
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=7.5e-23 Score=221.53 Aligned_cols=227 Identities=16% Similarity=0.081 Sum_probs=176.9
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCcc--chhhHHhhhhhhhhhhccCCCccchhhhccccccccCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~--lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L 164 (950)
++|+.|+|++|.+....+..|..+++|++|+|++|.++.. .|..+..+++|..+.+.+|.+..++.. +
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~----------~ 97 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----------F 97 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE----------E
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh----------c
Confidence 5788888888888865555678888888888888888743 366777788888888888877655432 1
Q ss_pred CCCCCccEEEccCCcCccchh--hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccc--cccccccccce
Q 002227 165 PQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHI 238 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~--L~~l~~~L~~L 238 (950)
..+++|++|++++|.++.++. .+..+++|++|++++|.+..+. .+..+++|+.|+|++|.+.. ++..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 356788999999998887764 6888889999999999887642 57788899999999998876 56666677889
Q ss_pred eEEEecCCCCCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhcc-CCCccc
Q 002227 239 VKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKL 315 (950)
Q Consensus 239 ~~L~Ls~N~Ls~L-p-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L-~~L~~L 315 (950)
+.|+|++|.|+.+ + .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++..... ..+..+ +.|+.+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~L 253 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK---QELQHFPSSLAFL 253 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSS---SSCCCCCTTCCEE
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCH---HHHHhhhccCCEE
Confidence 9999999988886 3 67888899999999999888765 457788899999999998876532 234445 478889
Q ss_pred ccCCCcCChhHH
Q 002227 316 KVDGKEISTREL 327 (950)
Q Consensus 316 ~LdgN~Is~~e~ 327 (950)
+|++|++++...
T Consensus 254 ~L~~N~~~~~c~ 265 (306)
T 2z66_A 254 NLTQNDFACTCE 265 (306)
T ss_dssp ECTTCCEECSGG
T ss_pred EccCCCeecccC
Confidence 999999887653
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.5e-21 Score=224.59 Aligned_cols=262 Identities=21% Similarity=0.264 Sum_probs=151.9
Q ss_pred ccccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCC
Q 002227 23 PLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (950)
Q Consensus 23 slL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~ 102 (950)
..+..++.|++..+.+..++. +..+++|+.+.. ++|.... ++. +.++++|+.|+|++|.+.+.
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l--------------~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILM--------------NNNQIAD-ITP-LANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC--------------CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEEC--------------CCCcccc-Chh-hcCCCCCCEEECCCCCCCCC
Confidence 346778999999999999886 666666555432 3332222 222 55555555555555555543
Q ss_pred CCccCCCCCCCcEEEeeCCCCCccch-------------------hhHHhhhhhhhhhhccCCCccchhhhccccccccC
Q 002227 103 TPLSLLPFCRLKVLELRGCDLSTSAA-------------------KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (950)
Q Consensus 103 iP~sL~~L~nL~~LdLS~N~Ls~~lP-------------------~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~ 163 (950)
.+ +..+++|++|+|++|.+.+... ..+..++.|..+.+.+|.+..+. .
T Consensus 128 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~ 194 (466)
T 1o6v_A 128 DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----------V 194 (466)
T ss_dssp GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----------G
T ss_pred hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----------h
Confidence 22 5555555555555555543110 11444455555555555444332 1
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEe
Q 002227 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (950)
Q Consensus 164 L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~L 243 (950)
+..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++.+..+++|+.|+|++|.+..+++ +..+++|+.|+|
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 2345566666666666665543 55566666666666666666666666666666666666666554 334466666666
Q ss_pred cCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 244 s~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
++|.++.++.+..+++|+.|+|++|.+.++++ +..+++|+.|+|++|+++.... +..++.|+.+++.+|+++
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 273 GANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCC
T ss_pred CCCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccC
Confidence 66666666556666666666666666666543 4556666666666666654431 345556666666666655
Q ss_pred h
Q 002227 324 T 324 (950)
Q Consensus 324 ~ 324 (950)
.
T Consensus 345 ~ 345 (466)
T 1o6v_A 345 D 345 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=3.6e-22 Score=216.12 Aligned_cols=268 Identities=21% Similarity=0.222 Sum_probs=208.8
Q ss_pred cEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHH-HhcCCCCCcEEEccCCCCCCC--CCc
Q 002227 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDP--TPL 105 (950)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~-~L~~L~~L~~LdLs~N~L~~~--iP~ 105 (950)
..++....++..+|..+. +. +..+++++|... .+|. .|.++++|+.|+|++|.+... .|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~--------------l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SS--------------ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CEEEcCCCCcccCCCCCC--CC--------------CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 357777777887775322 11 234566666543 4554 579999999999999998743 366
Q ss_pred cCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccc-h
Q 002227 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-D 184 (950)
Q Consensus 106 sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~L-P 184 (950)
.+..+++|++|+|++|.+.. +|..+..+++|..+.+.+|.+..+... ..+..+++|++|++++|.+..+ |
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--------SVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT--------TTTTTCTTCCEEECTTSCCEECST
T ss_pred ccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc--------hhhhhccCCCEEECCCCcCCccch
Confidence 77789999999999999975 666788999999999999987665431 2235678999999999999854 5
Q ss_pred hhcCCCCCCcEEEccCCCCCC--C-cCcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCcc--cCCCCC
Q 002227 185 ESLQLLPAVETLDLSRNKFAK--V-DNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLK 258 (950)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~--l-~~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~ 258 (950)
..+..+++|++|+|++|.+.. + ..+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 578899999999999999986 3 47889999999999999999874 45667899999999999999975 678899
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCC-CCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 259 SLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 259 sL~~LdLs~N~Ls~l~~l~~L~~L~-~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
+|+.|+|++|.|++..+ ..+..++ +|+.|+|++|++.|.+... .....+...+.+.++.+.+.|
T Consensus 224 ~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~-~~~~~l~~~~~~~~~~~~~~C 288 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQ-SFLQWIKDQRQLLVEVERMEC 288 (306)
T ss_dssp TCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGH-HHHHHHHHTGGGBSCGGGCBE
T ss_pred cCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChH-HHHHHHHhhhhhhcccccccc
Confidence 99999999999998765 5677875 9999999999999987543 222333334444444444444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=5.4e-22 Score=222.31 Aligned_cols=226 Identities=16% Similarity=0.191 Sum_probs=124.3
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccc
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L 161 (950)
.+..+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..++...
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------- 136 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI------- 136 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH-------
Confidence 3556666666666666666555556666666666666666666655555666666666666666555444321
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCcCcCCC-------------------CCCcEEECC
Q 002227 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC-------------------VNLKHLDLG 221 (950)
Q Consensus 162 ~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L-------------------~~L~~LdLS 221 (950)
+..+++|++|++++|.++.+++ .+..+++|+.|++++|.++.++ +..+ ++|+.|+++
T Consensus 137 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 137 --FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp --TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred --hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECC
Confidence 1234556666666666654433 4555666666666666655432 1222 234444444
Q ss_pred CCCccccccccccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCccc
Q 002227 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (950)
Q Consensus 222 ~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~ 301 (950)
+|.+..++.. .+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+.
T Consensus 214 ~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~- 289 (390)
T 3o6n_A 214 HNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALNL- 289 (390)
T ss_dssp SSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSSCCCEEEC-
T ss_pred CCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCCcCcccCc-
Confidence 4444443321 124566666666666665555666666666666666665432 445556666666666666554321
Q ss_pred chhHhhccCCCcccccCCCcCCh
Q 002227 302 RAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 302 r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
.+..++.|+.|+|++|++..
T Consensus 290 ---~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 290 ---YGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp ---SSSCCTTCCEEECCSSCCCC
T ss_pred ---ccCCCCCCCEEECCCCccee
Confidence 12334555556666665543
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=222.28 Aligned_cols=271 Identities=16% Similarity=0.132 Sum_probs=214.9
Q ss_pred EEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCC
Q 002227 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLP 109 (950)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~ 109 (950)
..+.....+..+|..+. + .+..+++++|......+..|.++++|+.|+|++|.+++..|..|..
T Consensus 35 ~c~~~~~~l~~iP~~~~--~--------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--E--------------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp EEECCSTTCSSCCTTCC--T--------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred EeeCCCCCccccccccc--c--------------cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 46667777777765432 1 2344667777644433447899999999999999999888889999
Q ss_pred CCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCC-cCccch-hhc
Q 002227 110 FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIMD-ESL 187 (950)
Q Consensus 110 L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N-~Lt~LP-~sL 187 (950)
+++|++|+|++|.+++..+..+..+++|..+.+.+|.+..++.. ..+..+++|+.|++++| .+..++ ..+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--------SLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS--------CSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch--------hhhccCCCCcEEECCCCccccccCHHHc
Confidence 99999999999999986666689999999999999987766530 12346789999999999 577664 578
Q ss_pred CCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCcccccccc-ccccceeEEEecCCCCCCcc-----cCCCCCC
Q 002227 188 QLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLRNNALTTLR-----GIENLKS 259 (950)
Q Consensus 188 ~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~l~-~~L~~L~~L~Ls~N~Ls~Lp-----~L~~L~s 259 (950)
..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+..++... ..+++|+.|+|++|.++.++ ....+..
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 8999999999999999875 37889999999999999998877543 34689999999999998853 2345678
Q ss_pred CCEEEccCCCCCCCch---hhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHH
Q 002227 260 LEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (950)
Q Consensus 260 L~~LdLs~N~Ls~l~~---l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~ 327 (950)
++.++|++|.+.+... ...+..+++|+.|+|++|.++..+ ...|..++.|+.++|++|++.+...
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 8999999998876211 145788999999999999998655 3446788999999999999998764
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.4e-21 Score=227.68 Aligned_cols=296 Identities=17% Similarity=0.129 Sum_probs=208.8
Q ss_pred cccCCcEEEecCCCccchh-hhhhhccccccccC-CCCccc---------cccccccCCCCccchhHHHHhcCCCCCcEE
Q 002227 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLA-GAPLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~-~~~L~~---------L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~L 92 (950)
+...++.|++..+.+..++ ..+..+++|+.|.. +..+.. -.+..+++++|.. ..+|.. .+++|+.|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCC--PMASLRHL 126 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEECSC--CCTTCSEE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-CccCcc--ccccCCEE
Confidence 4467788888888888876 46677777776554 222211 1234677777764 466665 78888888
Q ss_pred EccCCCCCC-CCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC--c---------------------
Q 002227 93 SALPPPARD-PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST--N--------------------- 148 (950)
Q Consensus 93 dLs~N~L~~-~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L--~--------------------- 148 (950)
+|++|.+.+ .+|..|.++++|++|+|++|.+++.....+..+ +|..+.+..|.+ .
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 888888876 346788888888888888888875332222222 225555555543 0
Q ss_pred --------------------------------------------------------------------------------
Q 002227 149 -------------------------------------------------------------------------------- 148 (950)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (950)
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence
Q ss_pred -----cchhhhc----cc---------------------------------------cccccCCCCCCCccEEEccCCcC
Q 002227 149 -----ALRHVFA----SR---------------------------------------IVEIKDSPQWNRLSFVSCSCNRL 180 (950)
Q Consensus 149 -----sL~~l~~----~~---------------------------------------i~~L~~L~~L~~L~~L~Ls~N~L 180 (950)
.++..++ .. +..+.....+++|++|++++|.+
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 0000000 00 00000004567889999999988
Q ss_pred cc-chhhcCCCCCCcEEEccCCCCCCCc----CcCCCCCCcEEECCCCCccc-ccc-ccccccceeEEEecCCCCCCccc
Q 002227 181 VI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAA-FSEVSCHIVKLVLRNNALTTLRG 253 (950)
Q Consensus 181 t~-LP~sL~~L~~L~~LdLS~N~Lt~l~----~L~~L~~L~~LdLS~N~L~~-L~~-l~~~L~~L~~L~Ls~N~Ls~Lp~ 253 (950)
+. +|..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.++. ++. .+..+++|+.|+|++|+|++..
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-
Confidence 85 6778888999999999999988764 47888999999999999887 664 3456788999999999987631
Q ss_pred CCCC-CCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 254 IENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 254 L~~L-~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
+..+ ++|+.|+|++|+|+.+|. .+..+++|+.|+|++|.|+..+. ..+..++.|+.++|++|++.+.....
T Consensus 445 ~~~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 445 FRCLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp GSSCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEEecCCCcCCCcchH
Confidence 1222 689999999999999884 45599999999999999996653 24778899999999999999876544
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.7e-22 Score=235.51 Aligned_cols=242 Identities=16% Similarity=0.085 Sum_probs=201.5
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCcc--chhhHHhhhhhhhhhhcc
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICH 144 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~--lP~sL~~L~~Ll~LlL~~ 144 (950)
.+++++|.. +.+| .+ .+++|+.|++++|...... .+..+++|++|+|++|.+++. .|..+..++.|..+.+.+
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 355666655 6677 44 8999999999999654433 677899999999999999875 378899999999999999
Q ss_pred CCCccchhhhccccccccCCCCCCCccEEEccCCcCccchh--hcCCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEEC
Q 002227 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDL 220 (950)
Q Consensus 145 N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdL 220 (950)
|.+..++. .+..+++|+.|++++|.+..+++ .+..+++|+.|++++|.+... ..+..+++|+.|+|
T Consensus 386 n~l~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 386 NGAIIMSA----------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CSEEEECC----------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred Cccccchh----------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 98766542 23467899999999999996654 788999999999999999874 36889999999999
Q ss_pred CCCCccc--cccccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 221 GFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 221 S~N~L~~--L~~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
++|.+.+ ++..+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|+|+++.+ ..+..+++|+.|+|++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCc
Confidence 9999987 5666778899999999999999863 68999999999999999999854 67899999999999999998
Q ss_pred CCcccchhHhhccC-CCcccccCCCcCChhHHH
Q 002227 297 CSRWYRAQVFSYFA-HPAKLKVDGKEISTRELW 328 (950)
Q Consensus 297 ~~~~~r~~~~~~L~-~L~~L~LdgN~Is~~e~~ 328 (950)
..+. . +..++ .|+.++|++|++.+....
T Consensus 535 ~~p~---~-~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 535 TSKG---I-LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEES---C-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccCH---h-HhhhcccCcEEEccCCCcccCCcc
Confidence 6553 2 55665 599999999999986644
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.9e-22 Score=216.93 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=202.0
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
.++++++. +..+|..+ .++|+.|+|++|.+....|..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.
T Consensus 37 ~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 37 VVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp EEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred EEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 35565554 44566544 4789999999999998888899999999999999999999889999999999999999998
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCC--C--cCcCCCCCCcEEECC
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLDLG 221 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~--l--~~L~~L~~L~~LdLS 221 (950)
+..++... .++|++|++++|.++.+|. .+..+++|+.|++++|.++. + ..+..+ +|+.|+++
T Consensus 114 l~~l~~~~------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 114 LVEIPPNL------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSCCSSC------------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCccCccc------------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 87665422 2689999999999998876 58999999999999999974 2 356666 99999999
Q ss_pred CCCccccccccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 222 ~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
+|.++.++.... ++|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+
T Consensus 181 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp 257 (332)
T 2ft3_A 181 EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVP 257 (332)
T ss_dssp SSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecC
Confidence 999999886543 78999999999999974 78999999999999999999875 57889999999999999998655
Q ss_pred ccchhHhhccCCCcccccCCCcCChh
Q 002227 300 WYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 300 ~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
..+..++.|+.++|++|+++..
T Consensus 258 ----~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 258 ----AGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp ----TTGGGCTTCCEEECCSSCCCBC
T ss_pred ----hhhhcCccCCEEECCCCCCCcc
Confidence 2367789999999999999753
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=9.8e-22 Score=235.30 Aligned_cols=269 Identities=16% Similarity=0.146 Sum_probs=210.6
Q ss_pred cccCCcEEEecCCCccchhh-hhhhccccccccCCCC---cc-----------ccccccccCCCCccchhHHHHhcCCCC
Q 002227 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAP---LD-----------YLRAYVSDLGDHRALEQLRRILKLLTS 88 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~~~~---L~-----------~L~l~vLdLs~n~~l~~Lp~~L~~L~~ 88 (950)
.+..++.|++..+.+..++. .+..++.|+.+..... +. .-.+..+++++|...+..|..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 35667788888887776643 3566666666544211 00 013445677777766666777888888
Q ss_pred CcEEEccCCCCCCCCC-ccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCC
Q 002227 89 LKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (950)
Q Consensus 89 L~~LdLs~N~L~~~iP-~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L 167 (950)
|+.|+|++|.+.+.+| ..|..+++|++|+|++|.+.+..+..+..++.|..+.+.+|.+..+.... ..+..+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p-------~~~~~l 479 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP-------SPFQPL 479 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS-------CTTTTC
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC-------cccccC
Confidence 8888888888876554 67888888888888888888777778888888888888887665432110 123577
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc----------CcCCCCCCcEEECCCCCcccccc-ccccc
Q 002227 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD----------NLRKCVNLKHLDLGFNNLRSIAA-FSEVS 235 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~----------~L~~L~~L~~LdLS~N~L~~L~~-l~~~L 235 (950)
++|+.|++++|+|+.+|+ .+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.|+.++. .+..+
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 899999999999998876 5889999999999999998752 37889999999999999999886 45678
Q ss_pred cceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcC-CCCCCcEEEecCCCCCCCcc
Q 002227 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 236 ~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~-~L~~L~~L~LsgNpLt~~~~ 300 (950)
++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+++ ..+. .+++|+.|+|++||+.|.|.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH-HHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh-hHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999986 57899999999999999999876 4455 78999999999999999974
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-21 Score=233.02 Aligned_cols=226 Identities=20% Similarity=0.201 Sum_probs=127.8
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccc
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L 161 (950)
.+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|.|++..|..|..+++|..|.+.+|.+..++...
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------- 142 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI------- 142 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH-------
Confidence 4555666666666666666555556666666666666666666555555566666666666666555443321
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCcCcCCC----------------------------
Q 002227 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC---------------------------- 212 (950)
Q Consensus 162 ~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L---------------------------- 212 (950)
+..+++|++|+|++|.|+.+++ .|..+++|+.|+|++|.++.++ +..+
T Consensus 143 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 143 --FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp --TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred --hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 1234455555555555554433 4555555555555555555432 1112
Q ss_pred ------------CCCcEEECCCCCccccccccccccceeEEEecCCCCCCc-c-cCCCCCCCCEEEccCCCCCCCchhhh
Q 002227 213 ------------VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEF 278 (950)
Q Consensus 213 ------------~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~L-p-~L~~L~sL~~LdLs~N~Ls~l~~l~~ 278 (950)
++|+.|+|++|.++..+ .+..+++|+.|+|++|.|+.+ | .+..+++|+.|+|++|.|+.++ ..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--LY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--CS
T ss_pred CCcccccccccCCCCCEEECCCCCCCCCh-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--cc
Confidence 23444444444444432 233446666666666666664 2 5666667777777777766655 33
Q ss_pred cCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 279 LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 279 L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
+..+++|+.|+|++|++...+ ..+..++.|+.|+|++|+++.
T Consensus 297 ~~~l~~L~~L~Ls~N~l~~i~----~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLLHVE----RNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SSCCTTCCEEECCSSCCCCCG----GGHHHHTTCSEEECCSSCCCC
T ss_pred cccCCCCcEEECCCCCCCccC----cccccCCCCCEEECCCCCCCC
Confidence 455677777777777776443 224556677777777777654
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=5.4e-21 Score=207.68 Aligned_cols=202 Identities=24% Similarity=0.196 Sum_probs=170.1
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
+.++++|+.|++++|.++ .+|..+. ++|+.|+|++|.|++..|..+..+++|..+.+.+|.+..++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 567889999999999988 4565554 7899999999999988888888888888888888877665431
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-ccccccee
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIV 239 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~ 239 (950)
..+++|+.|++++|.|+.+|..+..+++|++|+|++|+|+.++ .|..+++|+.|+|++|+|+.++.. +..+++|+
T Consensus 74 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp --SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred --CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 3567899999999999999888889999999999999999875 588899999999999999988754 44678999
Q ss_pred EEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 240 KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 240 ~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|.+||+.|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence 9999999999886 4678899999999999999887 456677889999999999988874
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=222.95 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=52.5
Q ss_pred cccCCcEEEecCCCccchh-hhhhhccccccccCC-CCcccc---------ccccccCCCCccchhHHHHhcCCCCCcEE
Q 002227 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAG-APLDYL---------RAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~~-~~L~~L---------~l~vLdLs~n~~l~~Lp~~L~~L~~L~~L 92 (950)
+...++.|++..+.+..++ ..+..+++|+.|... ..+..+ .+..+++++|... .+|.. .+++|++|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL 95 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence 3366778888888887765 456666665554331 111111 1223455554322 34433 55555555
Q ss_pred EccCCCCCC-CCCccCCCCCCCcEEEeeCCCCCc
Q 002227 93 SALPPPARD-PTPLSLLPFCRLKVLELRGCDLST 125 (950)
Q Consensus 93 dLs~N~L~~-~iP~sL~~L~nL~~LdLS~N~Ls~ 125 (950)
+|++|.+++ .+|..|+.+++|++|+|++|.+++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch
Confidence 555555554 345555555666666666655554
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=219.51 Aligned_cols=253 Identities=19% Similarity=0.190 Sum_probs=204.7
Q ss_pred ccccCCcEEEecCCCccchhh-hhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCC
Q 002227 23 PLIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (950)
Q Consensus 23 slL~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~ 101 (950)
.+...++.|++..+.+..++. .+..+++|+. +++++|...+..+..|.++++|++|+|++|.++.
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~--------------L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQA--------------LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCE--------------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCE--------------EECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 345678999999999998875 4555554333 4566665555456679999999999999999997
Q ss_pred CCCccCCCCCCCcEEEeeCCCCCccch-hhHHhhhhhhhhhhccC-CCccchhhhccccccccCCCCCCCccEEEccCCc
Q 002227 102 PTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHN-STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNR 179 (950)
Q Consensus 102 ~iP~sL~~L~nL~~LdLS~N~Ls~~lP-~sL~~L~~Ll~LlL~~N-~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~ 179 (950)
..+..|..+++|++|+|++|.++...+ ..+..+++|..+.+.+| .+..+... .+..+++|+.|++++|.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------DFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---------HccCCCCCCEEECCCCC
Confidence 766679999999999999999987444 47888999999999998 35544321 23467899999999999
Q ss_pred Cccc-hhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc----cccccceeEEEecCCCCCC--
Q 002227 180 LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF----SEVSCHIVKLVLRNNALTT-- 250 (950)
Q Consensus 180 Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l----~~~L~~L~~L~Ls~N~Ls~-- 250 (950)
++.+ |..+..+++|++|++++|.+..++ .+..+++|+.|+|++|.++.++.. ......++.++|+++.++.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9966 778999999999999999998875 345689999999999999986532 1234678899999998876
Q ss_pred ---cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 251 ---LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 251 ---Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
+| .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|++.|.+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccCcC
Confidence 33 67889999999999999999875 45689999999999999999986
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=228.29 Aligned_cols=154 Identities=20% Similarity=0.178 Sum_probs=96.8
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcC---------------------cCCCCCCcEEECCCCC
Q 002227 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN---------------------LRKCVNLKHLDLGFNN 224 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~---------------------L~~L~~L~~LdLS~N~ 224 (950)
.+++|+.|++++|.+..+|..+..+ +|+.|++++|.+..++. ...+++|+.|+|++|.
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 4577888888888888777777666 77777777776665432 1345666667777666
Q ss_pred ccccc---cccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 225 LRSIA---AFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 225 L~~L~---~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
++.+. ..+..+++|+.|+|++|.++.++ .+..+++|+.|++++|.+...++...+..+++|+.|++++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-
Confidence 66542 23334566667777766666653 45666667777777776666543344566667777777776665332
Q ss_pred cchhHhhccCCCcccccCCCcCC
Q 002227 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 301 ~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
...+..++.|+.|.|++|.+.
T Consensus 438 --~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 438 --NGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp --TTTTTTCTTCCEEECTTCEEG
T ss_pred --hhhhhcCCcCcEEECcCCcCc
Confidence 233455666666666666654
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.1e-21 Score=226.10 Aligned_cols=136 Identities=26% Similarity=0.350 Sum_probs=113.4
Q ss_pred CCCCCCccEEEccCCcCccch---hhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcccccccc-------
Q 002227 164 SPQWNRLSFVSCSCNRLVIMD---ESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFS------- 232 (950)
Q Consensus 164 L~~L~~L~~L~Ls~N~Lt~LP---~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~------- 232 (950)
+..+++|+.|++++|.|+.+| ..+..+++|++|+|++|+++.+| .+..+++|+.|+|++|.|+.++...
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence 346788999999999998775 35788889999999999888876 5667778888888888776654321
Q ss_pred -----------ccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 233 -----------EVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 233 -----------~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
..+++|+.|+|++|+|+.+|....+++|+.|+|++|+|+++++ ..+..+++|+.|+|++|++.|.+.
T Consensus 437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 437 DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCH-HHHhcCcccCEEEecCCCccCCCc
Confidence 2468999999999999999877889999999999999999875 668899999999999999999874
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.2e-20 Score=221.35 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=93.4
Q ss_pred cCCCCCCcEEECCCCCccc--cccccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCC
Q 002227 209 LRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (950)
Q Consensus 209 L~~L~~L~~LdLS~N~L~~--L~~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~ 284 (950)
+..++.|+.|+|++|.+.. ++..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++ ..+..+++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~ 543 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNS 543 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCC
Confidence 4455667777777776432 3445566789999999999999974 78999999999999999999876 66899999
Q ss_pred CcEEEecCCCCCCCcccchhHhhcc-CCCcccccCCCcCChhHHHH
Q 002227 285 LLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 285 L~~L~LsgNpLt~~~~~r~~~~~~L-~~L~~L~LdgN~Is~~e~~~ 329 (950)
|+.|+|++|.|+..+. ..+..+ +.|+.++|++|++.|.+...
T Consensus 544 L~~L~Ls~N~l~~~~~---~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKK---QELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CCEEECTTSCCCBCCS---SCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCEEECCCCcCCCCCH---HHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9999999999987642 345555 57999999999999887543
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=5.3e-21 Score=223.11 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=96.6
Q ss_pred cCCCCCCcEEEccCCCCCCC---cCcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCC--cc-cCCCCCC
Q 002227 187 LQLLPAVETLDLSRNKFAKV---DNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTT--LR-GIENLKS 259 (950)
Q Consensus 187 L~~L~~L~~LdLS~N~Lt~l---~~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~--Lp-~L~~L~s 259 (950)
+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+..+. ..+..+++|+.|+|++|.++. +| .+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 34444444444444444433 13556666777777777666543 344456788888888888762 44 6788889
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhH
Q 002227 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 260 L~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e 326 (950)
|+.|+|++|.|+++.+ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++++..
T Consensus 472 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCC---HHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999888754 66888999999999999998664 245677888999999999998764
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=5.1e-22 Score=216.90 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=123.8
Q ss_pred CCCCCcEEEccCCCCCCCCCccC--CCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 85 ~L~~L~~LdLs~N~L~~~iP~sL--~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
++++|+.|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+..+...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~------------------------- 146 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW------------------------- 146 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-------------------------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-------------------------
Confidence 79999999999999998888876 8999999999999999986 7777776210
Q ss_pred CCCCCCCccEEEccCCcCccch-hhcCCCCCCcEEEccCCCCCCC----cC--cCCCCCCcEEECCCCCcccccc----c
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKV----DN--LRKCVNLKHLDLGFNNLRSIAA----F 231 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~l----~~--L~~L~~L~~LdLS~N~L~~L~~----l 231 (950)
.+++|++|++++|+|+.++ ..+..+++|++|+|++|++.+. +. +..+++|+.|+|++|.|+.++. .
T Consensus 147 ---~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 147 ---LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp ---CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred ---hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 1235566666666665444 3555566666666666654431 12 2555666666666666654332 1
Q ss_pred cccccceeEEEecCCCCCCc---ccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhc
Q 002227 232 SEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (950)
Q Consensus 232 ~~~L~~L~~L~Ls~N~Ls~L---p~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~ 308 (950)
+..+++|+.|+|++|.|+.. +.+..+++|+.|+|++|.|+.+|. .+. ++|+.|+|++|+|+..+. +..
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p~-----~~~ 294 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYNRLDRNPS-----PDE 294 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSSCCCSCCC-----TTT
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCCCCCCChh-----Hhh
Confidence 12335566666666666552 233445566666666666665542 222 556666666666654431 344
Q ss_pred cCCCcccccCCCcCCh
Q 002227 309 FAHPAKLKVDGKEIST 324 (950)
Q Consensus 309 L~~L~~L~LdgN~Is~ 324 (950)
++.|+.++|++|+++.
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 5555666666666543
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=9.4e-22 Score=228.83 Aligned_cols=218 Identities=17% Similarity=0.160 Sum_probs=177.0
Q ss_pred CCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCC
Q 002227 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (950)
Q Consensus 85 ~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L 164 (950)
.+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|..|.+++|.+..++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------------ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------------ 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC------------
Confidence 34489999999999988888888999999999999999887665 7888888888888887665542
Q ss_pred CCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-cc-ccccceeE
Q 002227 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FS-EVSCHIVK 240 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~-~~L~~L~~ 240 (950)
.++|+.|++++|.|+.++.. .+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+++++ .+ ..+++|+.
T Consensus 98 --~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred --CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 25889999999999877653 4688999999999998863 67788999999999999987543 22 25788999
Q ss_pred EEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCC
Q 002227 241 LVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (950)
Q Consensus 241 L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN 320 (950)
|+|++|.|+.++.+..+++|+.|+|++|.|+++++ .+..+++|+.|+|++|.|+..+ ..+..++.|+.++|++|
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp----~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTC
T ss_pred EecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccc----hhhccCCCCCEEEcCCC
Confidence 99999999988877788999999999999998874 4778899999999999998644 23566788899999999
Q ss_pred cCChhH
Q 002227 321 EISTRE 326 (950)
Q Consensus 321 ~Is~~e 326 (950)
++.+..
T Consensus 248 ~l~c~~ 253 (487)
T 3oja_A 248 GFHCGT 253 (487)
T ss_dssp CBCHHH
T ss_pred CCcCcc
Confidence 998654
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=9.9e-22 Score=216.91 Aligned_cols=223 Identities=14% Similarity=0.076 Sum_probs=145.9
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCC
Q 002227 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (950)
Q Consensus 86 L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~ 165 (950)
.++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|..+.+.+|.+..++..+ .
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l----------~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASI----------A 147 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGG----------G
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHH----------h
Confidence 466777777777766 55666666777777777777776 56666677777777777777665444321 2
Q ss_pred CCCCccEEEccCCcC-ccchhhcCC---------CCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcccccccccc
Q 002227 166 QWNRLSFVSCSCNRL-VIMDESLQL---------LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEV 234 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~L-t~LP~sL~~---------L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~ 234 (950)
.+++|++|++++|++ ..+|..+.. +++|+.|+|++|.|+.+| .+..+++|+.|+|++|.++.++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 455677777777543 355555433 777777777777777664 566777777777777777777665666
Q ss_pred ccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCC
Q 002227 235 SCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (950)
Q Consensus 235 L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L 312 (950)
+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+..+ ..+..+++|+.|+|++|++.... +..+..++.+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~i---P~~l~~L~~L 303 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRL---PSLIAQLPAN 303 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCC---CGGGGGSCTT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhc---cHHHhhccCc
Confidence 6777777777766655 33 56777777777777766554332 45667777777777777765442 1345666777
Q ss_pred cccccCCCcCCh
Q 002227 313 AKLKVDGKEIST 324 (950)
Q Consensus 313 ~~L~LdgN~Is~ 324 (950)
+.+.+..+.+..
T Consensus 304 ~~l~l~~~~~~~ 315 (328)
T 4fcg_A 304 CIILVPPHLQAQ 315 (328)
T ss_dssp CEEECCGGGSCC
T ss_pred eEEeCCHHHHHH
Confidence 777777665544
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.6e-21 Score=212.43 Aligned_cols=230 Identities=16% Similarity=0.132 Sum_probs=188.9
Q ss_pred cccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 002227 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (950)
Q Consensus 65 l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~ 144 (950)
+..++++++. +..+|..+.++++|++|+|++|.+. .+|..|..+++|++|+|++|.++ .+|..+..+++|..+.+.+
T Consensus 83 l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 3456677765 4478888889999999999999999 88999999999999999999998 6798999999999999998
Q ss_pred CCC-ccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCC
Q 002227 145 NST-NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGF 222 (950)
Q Consensus 145 N~L-~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~ 222 (950)
|++ ..++..+.. ......+..+++|++|++++|.|+.+|..+..+++|+.|+|++|.++.++ .+..+++|+.|+|++
T Consensus 160 n~~~~~~p~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLAS-TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEE-EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhh-ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 643 333322211 00011233578999999999999999999999999999999999999975 788999999999999
Q ss_pred CCccc-cccccccccceeEEEecCCCCCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 223 NNLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 223 N~L~~-L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
|.+.+ ++..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+..+ ..+..+++|+.+.+..|.+....
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEEECCGGGSCC--
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEEeCCHHHHHHHh
Confidence 88765 55566778999999999987766 55 78899999999999987765433 77999999999999988876543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=1.2e-20 Score=202.33 Aligned_cols=225 Identities=17% Similarity=0.153 Sum_probs=193.0
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCC
Q 002227 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (950)
Q Consensus 90 ~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~ 169 (950)
+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..+..+++|..+.+.+|.+..+... .+..+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------AFTGLAL 81 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTT
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh---------hcCCccC
Confidence 67888888887 456544 47999999999999998888899999999999999987766432 2346789
Q ss_pred ccEEEccCCc-Cccc-hhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEec
Q 002227 170 LSFVSCSCNR-LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (950)
Q Consensus 170 L~~L~Ls~N~-Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls 244 (950)
|++|++++|. +..+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.++.. +..+++|+.|+|+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 9999999997 8877 568999999999999999999874 588999999999999999998763 5567999999999
Q ss_pred CCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcC
Q 002227 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (950)
Q Consensus 245 ~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~I 322 (950)
+|+|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|.+|++
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSCE
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCC---HHHcccCcccCEEeccCCCc
Confidence 99999986 48899999999999999998854 67889999999999999998654 35577889999999999999
Q ss_pred ChhHHHHH
Q 002227 323 STRELWER 330 (950)
Q Consensus 323 s~~e~~~~ 330 (950)
.+......
T Consensus 238 ~c~~~~~~ 245 (285)
T 1ozn_A 238 VCDCRARP 245 (285)
T ss_dssp ECSGGGHH
T ss_pred cCCCCcHH
Confidence 98765443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.1e-22 Score=220.48 Aligned_cols=229 Identities=16% Similarity=0.150 Sum_probs=188.7
Q ss_pred cccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 002227 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (950)
Q Consensus 65 l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~ 144 (950)
+..+++++|......|..|..+++|+.|+|++|.+++..| |..+++|++|+|++|.+++.. ..+.+..+.+.+
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCC
Confidence 3446778887766677899999999999999999986654 899999999999999998643 236788889999
Q ss_pred CCCccchhhhccccccccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--Cc-CCCCCCcEEEC
Q 002227 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL-RKCVNLKHLDL 220 (950)
Q Consensus 145 N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L-~~L~~L~~LdL 220 (950)
|.+..+.. ..+++|+.|++++|.++.+++ .+..+++|+.|+|++|.++.++ .+ ..+++|++|+|
T Consensus 109 n~l~~~~~------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 109 NNISRVSC------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp SCCSEEEE------------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CccCCcCc------------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 98776643 235689999999999998765 7888999999999999999863 44 47899999999
Q ss_pred CCCCccccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 221 GFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 221 S~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
++|.|+.++.... +++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|++.|..
T Consensus 177 ~~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 177 QYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTSCCCEEECCCC-CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCCcCcccccccc-cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcC
Confidence 9999999876543 689999999999999985 7888999999999999999987 45889999999999999998553
Q ss_pred ccchhHhhccCCCccccc
Q 002227 300 WYRAQVFSYFAHPAKLKV 317 (950)
Q Consensus 300 ~~r~~~~~~L~~L~~L~L 317 (950)
....+..++.++.+.+
T Consensus 254 --~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 254 --LRDFFSKNQRVQTVAK 269 (317)
T ss_dssp --HHHHHHTCHHHHHHHH
T ss_pred --HHHHHhccccceEEEC
Confidence 2234445554554443
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=9.2e-22 Score=228.90 Aligned_cols=235 Identities=17% Similarity=0.174 Sum_probs=191.8
Q ss_pred EecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCC
Q 002227 32 KLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFC 111 (950)
Q Consensus 32 ~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~ 111 (950)
.+.......+|..+..+.. ..-.+..++|++|......|..|..+++|+.|+|++|.+++..| |..++
T Consensus 13 ~~~~~~~~~l~~~l~~l~~----------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~ 80 (487)
T 3oja_A 13 KIEKVTDSSLKQALASLRQ----------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS 80 (487)
T ss_dssp EEESCCTTTHHHHHHTTST----------TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT
T ss_pred ecccCchhhhHHHHHHhcc----------cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC
Confidence 4444455556665554431 01124457778887666667889999999999999999987665 99999
Q ss_pred CCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccc-hhhcCCC
Q 002227 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLL 190 (950)
Q Consensus 112 nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~L-P~sL~~L 190 (950)
+|++|+|++|.|++..+ .+.|..+.+.+|.+..+.. ..+++|+.|+|++|.|+.+ |..+..+
T Consensus 81 ~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~------------~~l~~L~~L~L~~N~l~~~~~~~~~~l 143 (487)
T 3oja_A 81 TLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC------------SRGQGKKNIYLANNKITMLRDLDEGCR 143 (487)
T ss_dssp TCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEE------------CCCSSCEEEECCSSCCCSGGGBCGGGG
T ss_pred CCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCc------------cccCCCCEEECCCCCCCCCCchhhcCC
Confidence 99999999999987443 2678889999998776643 2357899999999999976 4478899
Q ss_pred CCCcEEEccCCCCCCC--cCcC-CCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-cCCCCCCCCEEEcc
Q 002227 191 PAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (950)
Q Consensus 191 ~~L~~LdLS~N~Lt~l--~~L~-~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs 266 (950)
++|+.|+|++|.|+.+ +.+. .+++|+.|+|++|.|+.++... .+++|+.|+|++|.|++++ .+..+++|+.|+|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEec
Confidence 9999999999999985 2554 7899999999999999987655 4689999999999999974 78899999999999
Q ss_pred CCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 267 ~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
+|.|+++| ..+..+++|+.|++++|++.|.
T Consensus 223 ~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 223 NNKLVLIE--KALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TSCCCEEC--TTCCCCTTCCEEECTTCCBCHH
T ss_pred CCcCcccc--hhhccCCCCCEEEcCCCCCcCc
Confidence 99999987 4588999999999999999865
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=5.6e-21 Score=204.04 Aligned_cols=203 Identities=23% Similarity=0.316 Sum_probs=152.2
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|..+.+.+|.+..+... .+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---------AFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------TTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh---------hhcC
Confidence 4677777777777766666777777777777777777766666666677666777766665544321 1235
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCC--c-CcCCCCCCcEEECCCCCcccccc-cccccccee--
Q 002227 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--D-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV-- 239 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l--~-~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~-- 239 (950)
+++|+.|++++|.+..++. .+..+++|++|+|++|.++.+ + .+..+++|+.|+|++|+|+.++. .+..++.|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 6788899999888887765 688888999999999988873 3 67888899999999998888753 333344555
Q ss_pred --EEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 240 --KLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 240 --~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
.|++++|.|+.++ ......+|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCT
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccC
Confidence 8889999888874 44455589999999999988875 55778889999999999998876
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6.4e-21 Score=208.43 Aligned_cols=219 Identities=16% Similarity=0.187 Sum_probs=174.3
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccC
Q 002227 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (950)
Q Consensus 84 ~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~ 163 (950)
..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------- 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA----------- 102 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-----------
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-----------
Confidence 346778888888888774 34 57778888888888888876444 7777888888888887665532
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEe
Q 002227 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (950)
Q Consensus 164 L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~L 243 (950)
+..+++|+.|++++|.++.++. +..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++. +..+++|+.|+|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEEC
Confidence 2467799999999999998865 88999999999999999998889999999999999999999877 556789999999
Q ss_pred cCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 244 s~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
++|.|+.++.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|++++.+......+... .....++|+.+.
T Consensus 181 ~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~--~~~~~~~g~~~~ 255 (308)
T 1h6u_A 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCCEECCSEEEEE--CCCBCTTSCBCC
T ss_pred CCCccCcChhhcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCCeeecccEecc--ceeECCCCCCCC
Confidence 99999998888999999999999999998873 7889999999999999987653322211111 134456666664
Q ss_pred h
Q 002227 324 T 324 (950)
Q Consensus 324 ~ 324 (950)
.
T Consensus 256 ~ 256 (308)
T 1h6u_A 256 P 256 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=231.89 Aligned_cols=291 Identities=18% Similarity=0.129 Sum_probs=197.5
Q ss_pred cccCCcEEEecCCCccch-hhhhhhccccccccCCCC----------ccc-cccccccCCCCccchhHHHHhcCCCCCcE
Q 002227 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP----------LDY-LRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~~~----------L~~-L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~ 91 (950)
++..++.|+|..+.+..+ +..+..++.|+.|..... +.. -.+..++|++|......|..|.++++|+.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 667788999999988876 556677777776654222 111 12456788888777666888899999999
Q ss_pred EEccCCCCCCCCCcc--CCCCCCCcEEEeeCCCCCccch-hhHHhhhhhhhhhhccCCCccchhhhcccc--cccc----
Q 002227 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRI--VEIK---- 162 (950)
Q Consensus 92 LdLs~N~L~~~iP~s--L~~L~nL~~LdLS~N~Ls~~lP-~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i--~~L~---- 162 (950)
|+|++|.+.+.+|.. |..+++|++|+|++|.+++..+ ..+..+++|..+.+.+|.+..+.......+ ..+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999988766654 8889999999999999887654 578888888888888887755432111111 0000
Q ss_pred -----------CCCCCC------CccEEEccCCcCc-cchhhc------------------------------------C
Q 002227 163 -----------DSPQWN------RLSFVSCSCNRLV-IMDESL------------------------------------Q 188 (950)
Q Consensus 163 -----------~L~~L~------~L~~L~Ls~N~Lt-~LP~sL------------------------------------~ 188 (950)
.+..+. .|+.|++++|.+. .+|..+ .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 011111 3778888877654 222111 1
Q ss_pred C--CCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCc-c-cCCCCCCCC
Q 002227 189 L--LPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL-R-GIENLKSLE 261 (950)
Q Consensus 189 ~--L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~L-p-~L~~L~sL~ 261 (950)
. .++|+.|+|++|.+..+ ..+..+++|+.|+|++|.|..+++ .+..+++|+.|+|++|.|+.+ + .+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1 25677778877777764 256777788888888887777643 445567788888888877775 2 677777888
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 262 ~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
.|+|++|.|..+++ ..+..+++|+.|+|++|.++..+ .++.++.+.+++|+++
T Consensus 342 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCS--------SCCSCSEEEEESCCCC
T ss_pred EEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCccc--------CCCCcchhccCCCCcc
Confidence 88888888777664 45677778888888888776443 1455666666666665
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2e-20 Score=219.99 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=83.1
Q ss_pred cEEEecCCCccchhhhhhhccccccccC-CCCcc---------ccccccccCCCCccchhHHHHhcCCCCCcEEEccCCC
Q 002227 29 IVLKLNPAGLHYVQSRLEALRELERLLA-GAPLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPP 98 (950)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~-~~~L~---------~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~ 98 (950)
+.+++..+.+..+|..+. +.|+.+.. +..+. .-.+..+++++|......|..|.++++|++|+|++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 689999999999997653 33333322 11111 1124567788887665557778888888888888888
Q ss_pred CCCCCCccCCCCCCCcEEEeeCCCCCc-cchhhHHhhhhhhhhhhccCCCcc
Q 002227 99 ARDPTPLSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICHNSTNA 149 (950)
Q Consensus 99 L~~~iP~sL~~L~nL~~LdLS~N~Ls~-~lP~sL~~L~~Ll~LlL~~N~L~s 149 (950)
++ .+|.. .+++|++|+|++|.+++ ..|..+..+++|..+.+.+|.+..
T Consensus 112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 87 45554 78888888888888887 346788888888888888887653
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.2e-20 Score=196.64 Aligned_cols=179 Identities=22% Similarity=0.270 Sum_probs=125.1
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
++|+.|+|++|.+....+..|..+++|++|+|++|.++...+.. +..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~---------------------------------~~~ 83 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI---------------------------------FKE 83 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT---------------------------------TSS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh---------------------------------hcC
Confidence 34555555555555444445555555555555555554321111 124
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEE
Q 002227 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~ 242 (950)
+++|++|++++|.++.+|. .+..+++|++|+|++|.++.++ .|..+++|+.|+|++|.|+.++.. +..+++|+.|+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 5678888888888887765 4677888888888888888764 467788888888888888877653 45567888888
Q ss_pred ecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 243 Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++||+.|.+
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSS
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCC
Confidence 8888888875 47778888888888888888764 55677888888888888888776
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=224.51 Aligned_cols=290 Identities=17% Similarity=0.188 Sum_probs=209.3
Q ss_pred cccccCCcEEEecCC-Cccch-hhhhhhccccccccCC-CCcccc---------ccccccCCCCccchhHHHH--hcCCC
Q 002227 22 GPLIEGSIVLKLNPA-GLHYV-QSRLEALRELERLLAG-APLDYL---------RAYVSDLGDHRALEQLRRI--LKLLT 87 (950)
Q Consensus 22 ~slL~~l~~L~L~~~-~L~~L-p~~L~~L~~Le~L~~~-~~L~~L---------~l~vLdLs~n~~l~~Lp~~--L~~L~ 87 (950)
..-+..++.|++..+ .+..+ |..+..+++|+.|... ..+..+ .+..++|++|...+.+|.. +.+++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 344566788888887 44455 5667777777766542 222221 2346788888776656654 89999
Q ss_pred CCcEEEccCCCCCCCCC-ccCCCCCCCcEEEeeCCCCCccchhhHHhh--hhhhhhhhccCCCccchhh-----------
Q 002227 88 SLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLEL--RHTLEKIICHNSTNALRHV----------- 153 (950)
Q Consensus 88 ~L~~LdLs~N~L~~~iP-~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L--~~Ll~LlL~~N~L~sL~~l----------- 153 (950)
+|+.|+|++|.+.+..+ ..|+++++|++|+|++|.+++..|..+..+ ++|..+.+..|.+......
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 99999999999987655 579999999999999999998888888877 5666666666654331100
Q ss_pred --------------------hcccc------------------------c--cccCCCC--CCCccEEEccCCcCccc-h
Q 002227 154 --------------------FASRI------------------------V--EIKDSPQ--WNRLSFVSCSCNRLVIM-D 184 (950)
Q Consensus 154 --------------------~~~~i------------------------~--~L~~L~~--L~~L~~L~Ls~N~Lt~L-P 184 (950)
+...+ . ....+.. .++|+.|++++|.+..+ |
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 00000 0 0000111 26899999999999865 4
Q ss_pred hhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCcc--cCCCCCC
Q 002227 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKS 259 (950)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~s 259 (950)
..+..+++|+.|+|++|.+..++ .|..+++|+.|+|++|.|..+. ..+..+++|+.|+|++|.|+.++ .+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 57888999999999999998863 6888999999999999998874 45667889999999999998875 5888999
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 260 L~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
|+.|+|++|.|+.++. +++|+.|++++|+++..+.. ...++.++|.+|.++.
T Consensus 364 L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~-------~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKI-------NLTANLIHLSENRLEN 415 (844)
T ss_dssp CCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCC-------CTTCCEEECCSCCCCS
T ss_pred CCEEECCCCCCCcccC------CCCcchhccCCCCccccccc-------ccccceeecccCcccc
Confidence 9999999999987652 67788888888887754321 2334555555555544
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=3.4e-22 Score=218.31 Aligned_cols=154 Identities=19% Similarity=0.082 Sum_probs=128.5
Q ss_pred CCCCccEEEccCCcCccchhhcCCC-----CCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccc---cccc--c
Q 002227 166 QWNRLSFVSCSCNRLVIMDESLQLL-----PAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI---AAFS--E 233 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~Lt~LP~sL~~L-----~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L---~~l~--~ 233 (950)
.+++|++|++++|.++.+|..+..+ ++|++|+|++|+|..++ .+..+++|+.|+|++|++.+. +... .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 5678999999999999888777766 89999999999999875 789999999999999997653 2222 5
Q ss_pred cccceeEEEecCCCCCCcc-----cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhc
Q 002227 234 VSCHIVKLVLRNNALTTLR-----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (950)
Q Consensus 234 ~L~~L~~L~Ls~N~Ls~Lp-----~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~ 308 (950)
.+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|++.++...+..+++|+.|+|++|.|+..+. ..+
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS---SCC--
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh---hcc--
Confidence 6799999999999999753 235789999999999999997654567778999999999999985542 111
Q ss_pred cCCCcccccCCCcCChh
Q 002227 309 FAHPAKLKVDGKEISTR 325 (950)
Q Consensus 309 L~~L~~L~LdgN~Is~~ 325 (950)
+.|+.|+|++|+++..
T Consensus 274 -~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp -SEEEEEECCSSCCCSC
T ss_pred -CCceEEECCCCCCCCC
Confidence 6799999999999864
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.6e-19 Score=216.68 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=165.9
Q ss_pred cCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCc
Q 002227 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPL 105 (950)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~ 105 (950)
.+.+.|++..+.|..+|..+. ++|+.| ++++|. +..+|. .+++|+.|+|++|.|+. +|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L--------------~L~~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTL--------------VIPDNN-LTSLPA---LPPELRTLEVSGNQLTS-LPV 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEE--------------EECSCC-CSCCCC---CCTTCCEEEECSCCCSC-CCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEE--------------EecCCC-CCCCCC---cCCCCCEEEcCCCcCCc-CCC
Confidence 357899999999999886553 223322 223332 222332 34455555555555542 232
Q ss_pred cCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhc---------cccccccCCCCCCCccEEEcc
Q 002227 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVSCS 176 (950)
Q Consensus 106 sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~---------~~i~~L~~L~~L~~L~~L~Ls 176 (950)
.+++|++|+|++|.|++ +|. .+++|..+.+.+|.+..++.... +.+..++ ..+++|+.|+++
T Consensus 99 ---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~ 169 (622)
T 3g06_A 99 ---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWAY 169 (622)
T ss_dssp ---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECC
T ss_pred ---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcC--CccCCCCEEECC
Confidence 34555555555555544 222 23334444444444433322110 0000011 123467777777
Q ss_pred CCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCC
Q 002227 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (950)
Q Consensus 177 ~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~ 256 (950)
+|.|+.+| ..+++|+.|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.+| ..
T Consensus 170 ~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~ 239 (622)
T 3g06_A 170 NNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--VL 239 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--CC
T ss_pred CCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--CC
Confidence 77777766 4457888888888888877643 47888888888888877753 378999999999999988 56
Q ss_pred CCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 257 L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
+++|+.|+|++|.|+.++. .+++|+.|+|++|.|+..+ ..+..++.|+.++|++|+++......
T Consensus 240 l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCCcCHHH
Confidence 7899999999999999874 6789999999999998554 34778999999999999999765544
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.8e-19 Score=208.15 Aligned_cols=252 Identities=17% Similarity=0.156 Sum_probs=178.4
Q ss_pred ccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCC
Q 002227 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP 104 (950)
+..++.|++..+.+..+| .+..++.|+. +++++|.. ..+| ++.+++|++|+|++|.+++. |
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~--------------L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTK--------------LICTSNNI-TTLD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSE--------------EECCSSCC-SCCC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCE--------------EEccCCcC-CeEc--cccCCCCCEEECcCCCCcee-e
Confidence 566788888888888776 4555544333 34444432 2233 77888888888888888764 3
Q ss_pred ccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCC-cCccc
Q 002227 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIM 183 (950)
Q Consensus 105 ~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N-~Lt~L 183 (950)
|..+++|++|+|++|.+++ +| +..+++|..+.+.+|.+..++ +..+++|+.|++++| .+..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~------------l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID------------VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC------------CTTCTTCCEEECTTCSCCCCC
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec------------cccCCcCCEEECCCCCccccc
Confidence 7788888888888888887 33 777888888888888766542 235678888888888 44455
Q ss_pred hhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCCCCCEE
Q 002227 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGL 263 (950)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~L 263 (950)
.+..+++|+.|++++|+++.++ +..+++|+.|++++|.|+.++ +..+++|+.|+|++|+|+++| +..+++|+.|
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L 238 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYF 238 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEE
T ss_pred --ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEE
Confidence 4677888888888888888876 777888888888888888773 445678888888888888887 7788888888
Q ss_pred EccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCccc-----chhHhhccCCCcccccCCCcC
Q 002227 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY-----RAQVFSYFAHPAKLKVDGKEI 322 (950)
Q Consensus 264 dLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~-----r~~~~~~L~~L~~L~LdgN~I 322 (950)
++++|.|++++ +..+++|+.|++++|.+....-. ....+..++.|+.++|++|+.
T Consensus 239 ~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 239 DCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp ECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred EeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 88888888865 34556666666655555432100 001133457778888888764
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.6e-19 Score=208.48 Aligned_cols=250 Identities=19% Similarity=0.157 Sum_probs=132.2
Q ss_pred cCCcEEEecCCCccchhhhhhhccccccccCCCCccc-----cccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCC
Q 002227 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDY-----LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPAR 100 (950)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~-----L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~ 100 (950)
..++.|++..+.+..+|..+..|+.|..- +..+.. -.+..+++++|... .+| .++++++|++|++++|.++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~--~n~l~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVD--NNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECC--SSCCSCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECC--CCccCcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCc
Confidence 34556666666555555433333332210 111111 13445666666543 366 4777888888888888777
Q ss_pred CCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhh---------ccccccccCCCCCCCcc
Q 002227 101 DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF---------ASRIVEIKDSPQWNRLS 171 (950)
Q Consensus 101 ~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~---------~~~i~~L~~L~~L~~L~ 171 (950)
+ +|..+ ++|++|+|++|.+++ +| .+..++.|..+.+.+|.+..++... .+.+..++.+..+++|+
T Consensus 167 ~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~ 240 (454)
T 1jl5_A 167 K-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 240 (454)
T ss_dssp C-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred c-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCC
Confidence 4 44433 477888888888776 44 5777778888888887766544321 11122233344555555
Q ss_pred EEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccc-----------------c
Q 002227 172 FVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSE-----------------V 234 (950)
Q Consensus 172 ~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~-----------------~ 234 (950)
.|++++|+++.+|.. +++|+.|++++|+++.++.. +++|+.|++++|.+++++.... .
T Consensus 241 ~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~ 315 (454)
T 1jl5_A 241 TIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315 (454)
T ss_dssp EEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC
T ss_pred EEECCCCcCCccccc---ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCC
Confidence 666655555555432 24555555555555554422 2455555555555555432110 0
Q ss_pred ccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCC
Q 002227 235 SCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (950)
Q Consensus 235 L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~ 297 (950)
.++|+.|+|++|+++.+|.. +++|+.|+|++|.++.+|. .+++|+.|++++|++++
T Consensus 316 ~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS
T ss_pred cCcCCEEECCCCcccccccc--CCcCCEEECCCCccccccc-----hhhhccEEECCCCCCCc
Confidence 12444444544444444322 3455555555555555442 24555666666665554
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=4.5e-20 Score=213.01 Aligned_cols=258 Identities=17% Similarity=0.125 Sum_probs=153.1
Q ss_pred cCCcEEEecCCCccchhhhhhhccccccccCCC-------C-----cccc-----------ccccccCCCCccchhHHHH
Q 002227 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-------P-----LDYL-----------RAYVSDLGDHRALEQLRRI 82 (950)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~-------~-----L~~L-----------~l~vLdLs~n~~l~~Lp~~ 82 (950)
..++.|.+..+.+..+|..+..|+.|+.+.... + +..+ .+..+++++|. +..+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC
Confidence 556788888999999999888888877643310 0 0000 12334555554 2333331
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
.++|+.|++++|.+++ +|.. +++|++|+|++|.+++ +|.. .++|..+.+.+|.+..++
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp----------- 147 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP----------- 147 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-----------
T ss_pred ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-----------
Confidence 3566666776666665 4432 2566777777776665 2211 135556666666554432
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEE
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~ 242 (950)
.+..+++|++|++++|.++.+|..+ ++|++|++++|.++.++.+..+++|+.|++++|.+++++... ++|+.|+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV 221 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence 2346678888888888888776543 478888888888888777888888888888888888766543 5788888
Q ss_pred ecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcC
Q 002227 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (950)
Q Consensus 243 Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~I 322 (950)
+++|.++.+|.+..+++|+.|++++|+++.++. .+++|+.|++++|.+...+. .++.++.+++++|.+
T Consensus 222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 222 AGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENIF 289 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCC
T ss_pred CcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc-------ccCcCCEEECcCCcc
Confidence 888888887778888888888888888887763 24678888888888876442 135678888888877
Q ss_pred Ch
Q 002227 323 ST 324 (950)
Q Consensus 323 s~ 324 (950)
+.
T Consensus 290 ~~ 291 (454)
T 1jl5_A 290 SG 291 (454)
T ss_dssp SE
T ss_pred Cc
Confidence 64
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=2e-19 Score=211.02 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=62.2
Q ss_pred cceeEEEecCCCCCC--cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCC
Q 002227 236 CHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (950)
Q Consensus 236 ~~L~~L~Ls~N~Ls~--Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L 312 (950)
+.|+.|+|++|.+.. +| .+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCC---CGGGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCC---hhHHhCCCCC
Confidence 445566666665322 23 56778888888888888888765 66788888888888888887654 3456778888
Q ss_pred cccccCCCcCCh
Q 002227 313 AKLKVDGKEIST 324 (950)
Q Consensus 313 ~~L~LdgN~Is~ 324 (950)
+.|+|++|.++.
T Consensus 545 ~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 545 QVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCB
T ss_pred CEEECCCCcCCC
Confidence 888888888864
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=3.1e-19 Score=190.49 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=180.6
Q ss_pred EEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCc
Q 002227 91 VVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRL 170 (950)
Q Consensus 91 ~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L 170 (950)
.++..+..+. .+|..+. ++|++|+|++|.+++..+..+..+++|..+.+.+|.+..+... .+..+++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L 78 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---------AYQSLSHL 78 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT---------TTTTCTTC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH---------HccCCcCC
Confidence 3455555555 4566554 6899999999999998777899999999999999988766542 23467899
Q ss_pred cEEEccCCcCccch-hhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccc--cccccccccceeEEEecC
Q 002227 171 SFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRN 245 (950)
Q Consensus 171 ~~L~Ls~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~--L~~l~~~L~~L~~L~Ls~ 245 (950)
++|++++|.++.++ ..+..+++|++|++++|.+..++ .+..+++|+.|+|++|.++. ++..+..+++|+.|+|++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 99999999999776 57899999999999999999875 58899999999999999997 566677789999999999
Q ss_pred CCCCCcc--cCCCCCCCC----EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCC
Q 002227 246 NALTTLR--GIENLKSLE----GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~----~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ldg 319 (950)
|+|+.++ .+..+++|+ .|++++|.|+.++. ......+|+.|+|++|.++..+ ...+..++.|+.++|++
T Consensus 159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT--TSSCSCCEEEEECCSSCCSCCC---TTTTTTCCSCCEEECCS
T ss_pred CCCCcCCHHHhhhhhhccccceeeecCCCcccccCc--cccCCCcccEEECCCCceeecC---HhHhcccccccEEEccC
Confidence 9999864 555555555 89999999998874 3334558999999999998665 34567889999999999
Q ss_pred CcCChhH
Q 002227 320 KEISTRE 326 (950)
Q Consensus 320 N~Is~~e 326 (950)
|++.+..
T Consensus 234 N~~~c~c 240 (276)
T 2z62_A 234 NPWDCSC 240 (276)
T ss_dssp SCBCCCT
T ss_pred CcccccC
Confidence 9999875
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=6.3e-19 Score=203.55 Aligned_cols=221 Identities=19% Similarity=0.184 Sum_probs=180.9
Q ss_pred cccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 002227 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~ 146 (950)
.+++++|... .+| .+..+++|++|+|++|.+++. | ++.+++|++|+|++|.|++. + +..+++|..+.+.+|.
T Consensus 46 ~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 46 SLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EEECCSSCCC-CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSC
T ss_pred EEEccCCCcc-cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCc
Confidence 3455665433 345 588999999999999999874 3 88999999999999999884 3 7888899999999998
Q ss_pred CccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCC-CCCCcCcCCCCCCcEEECCCCCc
Q 002227 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNL 225 (950)
Q Consensus 147 L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~-Lt~l~~L~~L~~L~~LdLS~N~L 225 (950)
+..++ +..+++|++|++++|.|+.++ +..+++|+.|++++|. +..+ .+..+++|+.|+|++|.|
T Consensus 118 l~~l~------------~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 118 LTKLD------------VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CSCCC------------CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCC
T ss_pred CCeec------------CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcc
Confidence 76652 346789999999999999874 7889999999999994 5455 678889999999999999
Q ss_pred cccccccccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhH
Q 002227 226 RSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV 305 (950)
Q Consensus 226 ~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~ 305 (950)
+.++ ...+++|+.|++++|.|+.++ +..+++|+.|+|++|+|+++| +..+++|+.|++++|+++..+
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~------ 249 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD------ 249 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC------
T ss_pred ceec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC------
Confidence 9986 556789999999999999984 888999999999999999975 678899999999999998764
Q ss_pred hhccCCCcccccCCCcCC
Q 002227 306 FSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 306 ~~~L~~L~~L~LdgN~Is 323 (950)
+..++.|+.+.+.+|.+.
T Consensus 250 ~~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLL 267 (457)
T ss_dssp CTTCTTCCEEECTTCCCS
T ss_pred HHHCCCCCEEeccCCCCC
Confidence 234566666666666554
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1e-19 Score=190.42 Aligned_cols=201 Identities=13% Similarity=0.158 Sum_probs=122.6
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCC-CCccchhhHHhhhhhhhhhhcc-CCCccchhh
Q 002227 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICH-NSTNALRHV 153 (950)
Q Consensus 76 l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~-Ls~~lP~sL~~L~~Ll~LlL~~-N~L~sL~~l 153 (950)
+..+|. + .++|+.|+|++|.++...+..|..+++|++|+|++|. ++...+..|..+++|..+.+.+ |.+..++..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 444554 2 2378999999999987777788899999999999997 8775555666666555555555 555444321
Q ss_pred hccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCc---EEEccCC-CCCCCc--CcCCCCCCc-EEECCCCCcc
Q 002227 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVE---TLDLSRN-KFAKVD--NLRKCVNLK-HLDLGFNNLR 226 (950)
Q Consensus 154 ~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~---~LdLS~N-~Lt~l~--~L~~L~~L~-~LdLS~N~L~ 226 (950)
. +..+++|+.|++++|.++.+|. +..+++|+ .|++++| .++.++ .|..+++|+ .|+|++|.|+
T Consensus 100 ~---------f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 A---------LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp S---------EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred H---------hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 1 1234556666666666666554 55555555 6666666 565543 355566666 6666666666
Q ss_pred ccccccccccceeEEEecCCC-CCCcc--cCCCC-CCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCC
Q 002227 227 SIAAFSEVSCHIVKLVLRNNA-LTTLR--GIENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (950)
Q Consensus 227 ~L~~l~~~L~~L~~L~Ls~N~-Ls~Lp--~L~~L-~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgN 293 (950)
.++......++|+.|+|++|+ |+.++ .+..+ ++|+.|+|++|.|+.++. ..+++|+.|.+.++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 555433333556666666663 65553 45555 566666666666665553 14555666665554
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=1.3e-20 Score=210.95 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=43.9
Q ss_pred ccCCCCccchh----HHHHhcCCCCCcEEEccCCC---CCCCCCccC-------CCCCCCcEEEeeCCCCCc----cchh
Q 002227 68 SDLGDHRALEQ----LRRILKLLTSLKVVSALPPP---ARDPTPLSL-------LPFCRLKVLELRGCDLST----SAAK 129 (950)
Q Consensus 68 LdLs~n~~l~~----Lp~~L~~L~~L~~LdLs~N~---L~~~iP~sL-------~~L~nL~~LdLS~N~Ls~----~lP~ 129 (950)
++|++|..... ++..+..+++|+.|+|++|. +.+.+|..+ ..+++|++|+|++|.++. .+|.
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 116 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence 34455544333 33445667777777776653 333444443 566777777777777765 3444
Q ss_pred hHHhhhhhhhhhhccCCC
Q 002227 130 GLLELRHTLEKIICHNST 147 (950)
Q Consensus 130 sL~~L~~Ll~LlL~~N~L 147 (950)
.+..+++|..|.+.+|.+
T Consensus 117 ~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp HHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCCCEEECcCCCC
Confidence 555555444444444443
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=8.8e-20 Score=198.77 Aligned_cols=202 Identities=20% Similarity=0.162 Sum_probs=145.0
Q ss_pred CCCCCcEEEccCCCCCCCCCccC--CCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 85 ~L~~L~~LdLs~N~L~~~iP~sL--~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
.+++|+.|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+. +....
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~--------------------------- 140 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQ--------------------------- 140 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHH---------------------------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHH---------------------------
Confidence 45779999999999999999888 8999999999999999864331 11000
Q ss_pred CCCCCCCccEEEccCCcCccch-hhcCCCCCCcEEEccCCCCCC---Cc---CcCCCCCCcEEECCCCCccccccc----
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAK---VD---NLRKCVNLKHLDLGFNNLRSIAAF---- 231 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~---l~---~L~~L~~L~~LdLS~N~L~~L~~l---- 231 (950)
+..+++|++|+|++|.+..++ ..+..+++|++|+|++|++.. ++ .+..+++|++|+|++|+|+.++..
T Consensus 141 -~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 -QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp -TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred -hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 013457888888888887655 467778888888888887654 21 235677888888888888766542
Q ss_pred cccccceeEEEecCCCCCCc-c-cCCCC---CCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHh
Q 002227 232 SEVSCHIVKLVLRNNALTTL-R-GIENL---KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (950)
Q Consensus 232 ~~~L~~L~~L~Ls~N~Ls~L-p-~L~~L---~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~ 306 (950)
+..+++|++|+|++|+|+.+ | .+..+ ++|++|+|++|+|+.+|. .+ .++|+.|+|++|+|+..+. +
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~-----~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ-----P 290 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC-----T
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch-----h
Confidence 34457788888888888775 3 44444 688888888888887763 22 2678888888888875432 3
Q ss_pred hccCCCcccccCCCcCCh
Q 002227 307 SYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 307 ~~L~~L~~L~LdgN~Is~ 324 (950)
..++.|+.++|++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 456778888888888764
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1e-18 Score=189.68 Aligned_cols=203 Identities=20% Similarity=0.168 Sum_probs=172.2
Q ss_pred cCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchh
Q 002227 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (950)
Q Consensus 106 sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~ 185 (950)
.+..+++|+.|++++|.++. +|..+. +.+..+.+.+|.+..+.... +..+++|+.|+|++|.|+.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLAT---------LMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGG---------GTTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHH---------hhcCCCCCEEECCCCccCcccC
Confidence 36778999999999999986 555443 46778889999887665322 2467899999999999998876
Q ss_pred hcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCC
Q 002227 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (950)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~ 261 (950)
. ..+++|++|+|++|+|+.++ .+..+++|+.|+|++|+|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+
T Consensus 73 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 4 78999999999999999987 57889999999999999999874 4667899999999999999986 478899999
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhH
Q 002227 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 262 ~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e 326 (950)
.|+|++|+|+.++. ..+..+++|+.|+|++|+|+..+. .+..+..|+.+.|.+|++.|..
T Consensus 152 ~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 152 KLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp EEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSCCBCCSG
T ss_pred EEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCCCccCcC
Confidence 99999999999886 667889999999999999996652 2334568999999999998865
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=8e-19 Score=191.82 Aligned_cols=207 Identities=22% Similarity=0.261 Sum_probs=179.7
Q ss_pred EccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccE
Q 002227 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (950)
Q Consensus 93 dLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~ 172 (950)
.+..+.+.+.+ .+..+++|++|++++|.+.. +| .+..+++|..+.+.+|.+..+.. +..+++|++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-----------~~~l~~L~~ 89 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-----------LKNLTKITE 89 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCCSCCE
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-----------HccCCCCCE
Confidence 34445554432 34568999999999999986 44 68899999999999998877654 246789999
Q ss_pred EEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc
Q 002227 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (950)
Q Consensus 173 L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp 252 (950)
|++++|.++.++ .+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.|+.++
T Consensus 90 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 90 LELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp EECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence 999999999985 689999999999999999999889999999999999999999887 456789999999999999998
Q ss_pred cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 253 ~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|++...+ .+..++.|+.++|++|+++.
T Consensus 168 ~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEEEEEC
T ss_pred hhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc-----cccCCCCCCEEEccCCeeec
Confidence 89999999999999999999874 788999999999999998665 26788999999999999975
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=9.7e-19 Score=189.83 Aligned_cols=198 Identities=20% Similarity=0.220 Sum_probs=162.3
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccC
Q 002227 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (950)
Q Consensus 84 ~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~ 163 (950)
..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..+ +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l-------------------------------- 86 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--L-------------------------------- 86 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--------------------------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--c--------------------------------
Confidence 4578899999999998754 3 48889999999999999986332 2
Q ss_pred CCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEe
Q 002227 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (950)
Q Consensus 164 L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~L 243 (950)
..+++|+.|++++|.++.+|. +..+++|+.|+|++|+++.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|
T Consensus 87 -~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 163 (291)
T 1h6t_A 87 -ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL 163 (291)
T ss_dssp -TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred -ccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEc
Confidence 245689999999999998764 8899999999999999999988999999999999999999984 4556789999999
Q ss_pred cCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 244 s~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
++|.|+.++.+..+++|+.|+|++|.|+.++. +..+++|+.|++++|+++..+......+..++ ....+++..++
T Consensus 164 ~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~--~l~~l~~~~i~ 238 (291)
T 1h6t_A 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPN--TVKNTDGSLVT 238 (291)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEEEEEEEECCCEECCSEEEEEC--CCBCTTSCBCC
T ss_pred cCCccccchhhcCCCccCEEECCCCcCCCChh---hccCCCCCEEECcCCcccCCccccccccEEcc--eEECCCCCCcC
Confidence 99999998779999999999999999999763 78899999999999999876543333222232 33467777776
Q ss_pred hh
Q 002227 324 TR 325 (950)
Q Consensus 324 ~~ 325 (950)
..
T Consensus 239 ~~ 240 (291)
T 1h6t_A 239 PE 240 (291)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1.8e-18 Score=185.20 Aligned_cols=179 Identities=22% Similarity=0.324 Sum_probs=152.2
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
+..+++|+.|++.+|.+... ..+..+++|++|+|++|.+++. + .+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-~l------------------------------- 81 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-S-AL------------------------------- 81 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-G-GG-------------------------------
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-h-hh-------------------------------
Confidence 34578899999999988743 3588899999999999998762 1 11
Q ss_pred CCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccce
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHI 238 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L 238 (950)
..+++|++|++++|.++.++. .+..+++|++|+|++|+++.++ .+..+++|+.|+|++|.|+.+++. +..+++|
T Consensus 82 --~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 82 --KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp --TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred --cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 245689999999999997766 4789999999999999999875 388999999999999999988764 4567899
Q ss_pred eEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 239 VKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 239 ~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
+.|+|++|+|+.++ .+..+++|+.|+|++|.|+++++ ..+..+++|+.|+|++|++.|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccccC
Confidence 99999999999986 47899999999999999999875 66789999999999999998765
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.7e-18 Score=183.39 Aligned_cols=197 Identities=17% Similarity=0.152 Sum_probs=160.4
Q ss_pred CCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCcc
Q 002227 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (950)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~s 106 (950)
....+++....+..+|..+. . .+..+++++|......+..|.++++|++|+|++|.++...+..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~--------------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--A--------------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--T--------------TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCEEEccCCCCCccCCCCC--C--------------CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 45678888888888775432 1 1234566777644434457899999999999999999777777
Q ss_pred CCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchh-
Q 002227 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE- 185 (950)
Q Consensus 107 L~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~- 185 (950)
|..+++|++|+|++|.+++..+..+ ..+++|++|++++|.++.++.
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVF---------------------------------DQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTT---------------------------------TTCSSCCEEECCSSCCCCCCTT
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHc---------------------------------ccccCCCEEECCCCccCeeCHH
Confidence 8999999999999999986443222 245689999999999997765
Q ss_pred hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEecCCCCCCcc--cCCCCCCC
Q 002227 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (950)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL 260 (950)
.|..+++|++|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++. +..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 5789999999999999999886 488999999999999999998763 556789999999999999986 57889999
Q ss_pred CEEEccCCCCCC
Q 002227 261 EGLDISYNIIST 272 (950)
Q Consensus 261 ~~LdLs~N~Ls~ 272 (950)
+.|+|++|.+..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 999999999865
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=7.1e-18 Score=178.21 Aligned_cols=175 Identities=22% Similarity=0.310 Sum_probs=145.1
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
...+.++++++.+. .+|..+. ++|+.|+|++|.+++..+..+. .
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~---------------------------------~ 57 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR---------------------------------G 57 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT---------------------------------T
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc---------------------------------C
Confidence 45678889888887 5666554 6899999999998875553332 3
Q ss_pred CCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEE
Q 002227 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~ 242 (950)
+++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++. +..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 4578889999998886654 5788899999999999998875 578889999999999999988764 45678999999
Q ss_pred ecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 243 Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
|++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCC
Confidence 9999999986 58899999999999999999875 6788999999999999999987
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.1e-19 Score=203.59 Aligned_cols=246 Identities=15% Similarity=0.138 Sum_probs=185.0
Q ss_pred cchhHHHHhcCCCCCcEEEccCCCCCCCC----CccCCCCCCCcEEEeeCCC---CCccchhhH-------Hhhhhhhhh
Q 002227 75 ALEQLRRILKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCD---LSTSAAKGL-------LELRHTLEK 140 (950)
Q Consensus 75 ~l~~Lp~~L~~L~~L~~LdLs~N~L~~~i----P~sL~~L~nL~~LdLS~N~---Ls~~lP~sL-------~~L~~Ll~L 140 (950)
.+..++..+..+++|+.|+|++|.+.... +..|..+++|++|+|++|. +++.+|.++ ..+++|..+
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 35667778889999999999999998753 3458889999999999964 445566665 577888999
Q ss_pred hhccCCCccchhh-hccccccccCCCCCCCccEEEccCCcCcc-----chhhcCCC---------CCCcEEEccCCCCCC
Q 002227 141 IICHNSTNALRHV-FASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLL---------PAVETLDLSRNKFAK 205 (950)
Q Consensus 141 lL~~N~L~sL~~l-~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~-----LP~sL~~L---------~~L~~LdLS~N~Lt~ 205 (950)
.+++|.+...... ++.. +..+++|++|+|++|.|+. ++..+..+ ++|++|+|++|+|+.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDF------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp ECCSCCCCTTTHHHHHHH------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred ECCCCcCCHHHHHHHHHH------HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 9999987652111 1111 1246799999999999972 33344445 899999999999973
Q ss_pred --Cc----CcCCCCCCcEEECCCCCccc------cccccccccceeEEEecCCCCC-----Ccc-cCCCCCCCCEEEccC
Q 002227 206 --VD----NLRKCVNLKHLDLGFNNLRS------IAAFSEVSCHIVKLVLRNNALT-----TLR-GIENLKSLEGLDISY 267 (950)
Q Consensus 206 --l~----~L~~L~~L~~LdLS~N~L~~------L~~l~~~L~~L~~L~Ls~N~Ls-----~Lp-~L~~L~sL~~LdLs~ 267 (950)
++ .+..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.|+ .++ .+..+++|+.|+|++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 33 56678899999999999982 2225556789999999999995 344 678899999999999
Q ss_pred CCCCCCchh---hhc--CCCCCCcEEEecCCCCCCC--cccchhHhhccCCCcccccCCCcCChhH
Q 002227 268 NIISTFSEL---EFL--ASLPYLLNLWLEGNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 268 N~Ls~l~~l---~~L--~~L~~L~~L~LsgNpLt~~--~~~r~~~~~~L~~L~~L~LdgN~Is~~e 326 (950)
|.|+..... ..+ ..+++|+.|+|++|+|+.. ..+....+..++.|+.|.|.+|+++...
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999875221 334 3489999999999999752 0122233356799999999999999766
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=6.2e-18 Score=202.80 Aligned_cols=232 Identities=22% Similarity=0.181 Sum_probs=161.0
Q ss_pred cccCCcEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCC
Q 002227 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~i 103 (950)
+...++.|++..+.|..||..+.+|+ . +++++|. +..+|. .+++|++|+|++|.+++.
T Consensus 59 l~~~L~~L~L~~N~l~~lp~~l~~L~---~--------------L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~l- 116 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPALPPELR---T--------------LEVSGNQ-LTSLPV---LPPGLLELSIFSNPLTHL- 116 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCCCCTTCC---E--------------EEECSCC-CSCCCC---CCTTCCEEEECSCCCCCC-
T ss_pred hCCCCcEEEecCCCCCCCCCcCCCCC---E--------------EEcCCCc-CCcCCC---CCCCCCEEECcCCcCCCC-
Confidence 44678899999999998886333322 2 2333332 222332 445555555555555532
Q ss_pred CccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhc---------cccccccCCCCCCCccEEE
Q 002227 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVS 174 (950)
Q Consensus 104 P~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~---------~~i~~L~~L~~L~~L~~L~ 174 (950)
|. .+++|+.|+|++|.|+. +|.. +++|..+.+.+|.+..++.... +.+..++ ..+++|+.|+
T Consensus 117 ~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~ 187 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP--MLPSGLQELS 187 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEE
T ss_pred CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc--ccCCCCcEEE
Confidence 22 33455555555555544 2322 2344445555555444332110 0111111 2457899999
Q ss_pred ccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccC
Q 002227 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (950)
Q Consensus 175 Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L 254 (950)
+++|.|+.+|.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ ..+++|+.|+|++|.|+.+|.
T Consensus 188 Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 188 VSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence 999999998753 57899999999999998753 589999999999999987 345899999999999999987
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC
Q 002227 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 255 ~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
.+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|+++..
T Consensus 259 -~~~~L~~L~Ls~N~L~~lp--~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCTTCCEEECCSSCCCSCC--GGGGGSCTTCEEECCSCCCCHH
T ss_pred -ccccCcEEeCCCCCCCcCC--HHHhhccccCEEEecCCCCCCc
Confidence 6789999999999999987 5688999999999999999854
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=3.7e-19 Score=193.86 Aligned_cols=195 Identities=20% Similarity=0.176 Sum_probs=146.6
Q ss_pred cccccCCCCccchhHHHHh--cCCCCCcEEEccCCCCCCCCC----ccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhh
Q 002227 65 AYVSDLGDHRALEQLRRIL--KLLTSLKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL 138 (950)
Q Consensus 65 l~vLdLs~n~~l~~Lp~~L--~~L~~L~~LdLs~N~L~~~iP----~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll 138 (950)
+..+++++|...+.+|..+ ..+++|+.|+|++|.+.+..| ..+..+++|++|+|++|.+.+..|..+.
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~------ 166 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR------ 166 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC------
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc------
Confidence 3456777887777777777 899999999999999987655 4556799999999999999875554443
Q ss_pred hhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCcc---chh--hcCCCCCCcEEEccCCCCCCCcC-----
Q 002227 139 EKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI---MDE--SLQLLPAVETLDLSRNKFAKVDN----- 208 (950)
Q Consensus 139 ~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~---LP~--sL~~L~~L~~LdLS~N~Lt~l~~----- 208 (950)
.+++|++|+|++|++.. ++. .+..+++|++|+|++|+++.++.
T Consensus 167 ---------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 167 ---------------------------AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp ---------------------------CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred ---------------------------cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 34577888888887653 332 23577788888888888876542
Q ss_pred cCCCCCCcEEECCCCCcccc-ccccccc---cceeEEEecCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCC
Q 002227 209 LRKCVNLKHLDLGFNNLRSI-AAFSEVS---CHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP 283 (950)
Q Consensus 209 L~~L~~L~~LdLS~N~L~~L-~~l~~~L---~~L~~L~Ls~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~ 283 (950)
+..+++|++|+|++|.|+.+ |.....+ ++|++|+|++|+|+.+| .+ .++|+.|+|++|+|++++. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~---~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRAPQ---PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSCCC---TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCCch---hhhCC
Confidence 35678888888888888876 4333333 68888888888888876 33 2788888999998888763 56778
Q ss_pred CCcEEEecCCCCCC
Q 002227 284 YLLNLWLEGNPLCC 297 (950)
Q Consensus 284 ~L~~L~LsgNpLt~ 297 (950)
+|+.|+|++|+|+.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 88899999998864
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=8.3e-19 Score=195.38 Aligned_cols=255 Identities=15% Similarity=0.120 Sum_probs=186.3
Q ss_pred cCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCC----ccCCCCC-CCcEEEeeCCCCCccchhhHHhh-----hhhh
Q 002227 69 DLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPFC-RLKVLELRGCDLSTSAAKGLLEL-----RHTL 138 (950)
Q Consensus 69 dLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP----~sL~~L~-nL~~LdLS~N~Ls~~lP~sL~~L-----~~Ll 138 (950)
+++.+...+.+|..+...++|+.|+|++|.+++..+ ..|..++ +|++|+|++|.|++..+..+..+ +.|.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 456666677788877777789999999999887766 6777888 89999999999988777777776 7888
Q ss_pred hhhhccCCCccchhhh-ccccccccCCCCC-CCccEEEccCCcCccchh-----hcCCC-CCCcEEEccCCCCCCC----
Q 002227 139 EKIICHNSTNALRHVF-ASRIVEIKDSPQW-NRLSFVSCSCNRLVIMDE-----SLQLL-PAVETLDLSRNKFAKV---- 206 (950)
Q Consensus 139 ~LlL~~N~L~sL~~l~-~~~i~~L~~L~~L-~~L~~L~Ls~N~Lt~LP~-----sL~~L-~~L~~LdLS~N~Lt~l---- 206 (950)
.+.+++|.+....... ...+ ..+ ++|+.|+|++|.|+..+. .+..+ ++|++|+|++|.|+..
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTL------AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHH------HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred EEECcCCcCChHHHHHHHHHH------HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 8888888776543321 1111 123 689999999999985543 24453 5899999999999853
Q ss_pred --cCcCCCC-CCcEEECCCCCcccccc-----ccccc-cceeEEEecCCCCCC-----cc-cCCC-CCCCCEEEccCCCC
Q 002227 207 --DNLRKCV-NLKHLDLGFNNLRSIAA-----FSEVS-CHIVKLVLRNNALTT-----LR-GIEN-LKSLEGLDISYNII 270 (950)
Q Consensus 207 --~~L~~L~-~L~~LdLS~N~L~~L~~-----l~~~L-~~L~~L~Ls~N~Ls~-----Lp-~L~~-L~sL~~LdLs~N~L 270 (950)
..+..++ +|+.|+|++|.|+.... ....+ ++|+.|+|++|.|+. ++ .+.. .++|+.|+|++|.|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 1344554 89999999999987543 22233 489999999999987 33 4444 45899999999999
Q ss_pred CCCch---hhhcCCCCCCcEEEecCCCCCCCccc----chhHhhccCCCcccccCCCcCChhHHHH
Q 002227 271 STFSE---LEFLASLPYLLNLWLEGNPLCCSRWY----RAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 271 s~l~~---l~~L~~L~~L~~L~LsgNpLt~~~~~----r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
+..+. ...+..+++|+.|+|++|.+...... ....+..++.|+.++|++|++.......
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 98754 13457789999999999986544211 1123445667888999999998774333
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=6.8e-18 Score=176.59 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=168.9
Q ss_pred CCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-CccchhhhccccccccCCCCCCCccEEEccC
Q 002227 99 ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSC 177 (950)
Q Consensus 99 L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~-L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~ 177 (950)
++ .+|. +. ++|++|+|++|.+++..+..+..+++|..+.+.+|. +..++...+ ..+++|++|++++
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f---------~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF---------YNLSKVTHIEIRN 89 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE---------ESCTTCCEEEEEE
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc---------CCCcCCcEEECCC
Confidence 44 4565 43 489999999999999777789999999999999996 777765322 3577999999998
Q ss_pred -CcCccchh-hcCCCCCCcEEEccCCCCCCCcCcCCCCCCc---EEECCCC-Cccccccc-ccccccee-EEEecCCCCC
Q 002227 178 -NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLK---HLDLGFN-NLRSIAAF-SEVSCHIV-KLVLRNNALT 249 (950)
Q Consensus 178 -N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~---~LdLS~N-~L~~L~~l-~~~L~~L~-~L~Ls~N~Ls 249 (950)
|.|+.+|. .|..+++|+.|++++|.++.++.+..+++|+ .|+|++| .++.++.. +..+++|+ .|+|++|.|+
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 99998875 6889999999999999999998888899998 9999999 99998763 56689999 9999999999
Q ss_pred Ccc-cCCCCCCCCEEEccCCC-CCCCchhhhcCCC-CCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCC
Q 002227 250 TLR-GIENLKSLEGLDISYNI-ISTFSELEFLASL-PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (950)
Q Consensus 250 ~Lp-~L~~L~sL~~LdLs~N~-Ls~l~~l~~L~~L-~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN 320 (950)
.++ .....++|+.|+|++|+ |+.++. ..+..+ ++|+.|+|++|+++..+.. .++.++.|.+.++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEECTTC
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCChh------HhccCceeeccCc
Confidence 886 33333899999999995 998875 668888 9999999999999876532 4667888887765
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=6.6e-19 Score=200.26 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=19.4
Q ss_pred cccCCcEEEecCCCcc-----chhhhhhhccccccc
Q 002227 24 LIEGSIVLKLNPAGLH-----YVQSRLEALRELERL 54 (950)
Q Consensus 24 lL~~l~~L~L~~~~L~-----~Lp~~L~~L~~Le~L 54 (950)
.+..++.|++..+.+. .++..+..++.|+.+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L 61 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 3456778888888777 445555555555443
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=7.1e-19 Score=200.00 Aligned_cols=256 Identities=16% Similarity=0.064 Sum_probs=169.6
Q ss_pred ccccCCCCccchhHHHH-----hcCCCCCcEEEccCCCCCCCC----CccCCCCCCCcEEEeeCCCCCccchhhHHh---
Q 002227 66 YVSDLGDHRALEQLRRI-----LKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDLSTSAAKGLLE--- 133 (950)
Q Consensus 66 ~vLdLs~n~~l~~Lp~~-----L~~L~~L~~LdLs~N~L~~~i----P~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~--- 133 (950)
..+++++|......+.. ...+++|+.|+|++|.+++.. +..+..+++|++|+|++|.++...+..+..
T Consensus 116 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 195 (461)
T 1z7x_W 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh
Confidence 34667777654333332 223567888888888887633 555666789999999999887655555543
Q ss_pred --hhhhhhhhhccCCCccchhh-hccccccccCCCCCCCccEEEccCCcCccc-----hh-hcCCCCCCcEEEccCCCCC
Q 002227 134 --LRHTLEKIICHNSTNALRHV-FASRIVEIKDSPQWNRLSFVSCSCNRLVIM-----DE-SLQLLPAVETLDLSRNKFA 204 (950)
Q Consensus 134 --L~~Ll~LlL~~N~L~sL~~l-~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~L-----P~-sL~~L~~L~~LdLS~N~Lt 204 (950)
+++|..+.+.+|.+...... +... +..+++|+.|++++|.++.. ++ .+..+++|+.|+|++|.++
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~------l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLCGI------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHHHH------HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred cCCCCceEEEccCCCCcHHHHHHHHHH------HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 34778888888876653211 1111 12456888899998888742 22 2345788899999998888
Q ss_pred C-----Cc-CcCCCCCCcEEECCCCCcccccc-----c-cccccceeEEEecCCCCCCc------ccCCCCCCCCEEEcc
Q 002227 205 K-----VD-NLRKCVNLKHLDLGFNNLRSIAA-----F-SEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDIS 266 (950)
Q Consensus 205 ~-----l~-~L~~L~~L~~LdLS~N~L~~L~~-----l-~~~L~~L~~L~Ls~N~Ls~L------p~L~~L~sL~~LdLs 266 (950)
. ++ .+..+++|+.|+|++|.|..... . ....++|+.|+|++|.++.. ..+..+++|+.|+|+
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 6 32 45667888999999888864321 1 11235888999998888763 245667888899999
Q ss_pred CCCCCCCchh---hhcCC-CCCCcEEEecCCCCCCCc-ccchhHhhccCCCcccccCCCcCChhHH
Q 002227 267 YNIISTFSEL---EFLAS-LPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKLKVDGKEISTREL 327 (950)
Q Consensus 267 ~N~Ls~l~~l---~~L~~-L~~L~~L~LsgNpLt~~~-~~r~~~~~~L~~L~~L~LdgN~Is~~e~ 327 (950)
+|.|++.... ..+.. +++|+.|+|++|.++... ......+..++.|+.++|++|+++....
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 8888764321 11222 678889999998886321 0122445667888888999998887653
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.3e-17 Score=199.59 Aligned_cols=176 Identities=22% Similarity=0.234 Sum_probs=141.3
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccccc
Q 002227 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (950)
Q Consensus 83 L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~ 162 (950)
+..|++|+.|+|++|.+... | .|..+++|+.|+|++|.|++..| +.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~------------------------------ 84 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LT------------------------------ 84 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GG------------------------------
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hc------------------------------
Confidence 35678899999999998753 3 58889999999999999987433 32
Q ss_pred CCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEE
Q 002227 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (950)
Q Consensus 163 ~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~ 242 (950)
.+++|+.|+|++|.|..+| .+..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+
T Consensus 85 ---~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 159 (605)
T 1m9s_A 85 ---NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLS 159 (605)
T ss_dssp ---GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGSCTTCSEEE
T ss_pred ---cCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCch-hhcccCCCCEEE
Confidence 3457888888888888775 67888888888888888888888888888888888888888873 445568888888
Q ss_pred ecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 243 Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
|++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++...+.
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCcc
Confidence 88888888766888888888888888888864 37788888888888888876653
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.9e-17 Score=177.29 Aligned_cols=197 Identities=20% Similarity=0.242 Sum_probs=162.0
Q ss_pred CCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCC
Q 002227 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (950)
Q Consensus 88 ~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L 167 (950)
.+..+++..+.+.+. ..+..+++|+.|++++|.+.. ++ .+ ..+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l---------------------------------~~l 62 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GI---------------------------------QYL 62 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TG---------------------------------GGC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-cc---------------------------------ccC
Confidence 334455666665543 235567888888888888764 11 11 235
Q ss_pred CCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEec
Q 002227 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls 244 (950)
++|++|++++|.++.++ .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.++.+++. +..+++|+.|+|+
T Consensus 63 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 68999999999999874 7899999999999999999976 488999999999999999998764 4667999999999
Q ss_pred CCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcC
Q 002227 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (950)
Q Consensus 245 ~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~I 322 (950)
+|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCB
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCCCc
Confidence 99999986 47899999999999999999875 66789999999999999998665 34567889999999999999
Q ss_pred ChhH
Q 002227 323 STRE 326 (950)
Q Consensus 323 s~~e 326 (950)
.+..
T Consensus 218 ~~~~ 221 (272)
T 3rfs_A 218 DCTC 221 (272)
T ss_dssp CCCT
T ss_pred cccC
Confidence 8654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=4.6e-17 Score=171.97 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=141.3
Q ss_pred ccCCCCccchhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC
Q 002227 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (950)
Q Consensus 68 LdLs~n~~l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L 147 (950)
++++++. +..+|..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+..+.
T Consensus 19 l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------- 80 (251)
T 3m19_A 19 VDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--------------- 80 (251)
T ss_dssp EECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---------------
T ss_pred EecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc---------------
Confidence 3444432 445554433 6899999999999999898999999999999999999875554332
Q ss_pred ccchhhhccccccccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCC
Q 002227 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (950)
Q Consensus 148 ~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~ 224 (950)
.+++|++|+|++|.|+.+|. .|..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.
T Consensus 81 ------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 81 ------------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp ------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 34589999999999997765 5788999999999999999876 37889999999999999
Q ss_pred cccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCC
Q 002227 225 LRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTF 273 (950)
Q Consensus 225 L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l 273 (950)
|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+...
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999886 4567789999999999999975 688999999999999999865
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=3.3e-17 Score=194.63 Aligned_cols=180 Identities=19% Similarity=0.242 Sum_probs=101.8
Q ss_pred CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCC
Q 002227 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (950)
Q Consensus 87 ~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~ 166 (950)
.+|+.|+|++|.+++ +|..+. ++|++|+|++|.|+. +| ..++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~------------------------------- 100 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPA------------------------------- 100 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCT-------------------------------
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccC-------------------------------
Confidence 489999999999986 676663 899999999999984 55 2233
Q ss_pred CCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCC
Q 002227 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N 246 (950)
+|+.|+|++|.|+.+|. +.. +|+.|+|++|.|+.+|. .+++|+.|+|++|.|+.++. .+++|+.|+|++|
T Consensus 101 --~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 101 --SLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp --TCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred --CCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence 45555555555555544 332 55555555555555544 44555555555555555444 2345555555555
Q ss_pred CCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCC-------cEEEecCCCCCCCcccchhHhhccCCCcccccCC
Q 002227 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL-------LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 247 ~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L-------~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ldg 319 (950)
.|+.+|.+. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|.|+..+. .+..++.|+.|+|++
T Consensus 171 ~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 171 QLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDPTCTIILED 239 (571)
T ss_dssp CCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG----GGGGSCTTEEEECCS
T ss_pred CCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH----HHhcCCCCCEEEeeC
Confidence 555554432 555555555555555442 221 33 555555555554331 122255555555555
Q ss_pred CcCChh
Q 002227 320 KEISTR 325 (950)
Q Consensus 320 N~Is~~ 325 (950)
|+++..
T Consensus 240 N~l~~~ 245 (571)
T 3cvr_A 240 NPLSSR 245 (571)
T ss_dssp SSCCHH
T ss_pred CcCCCc
Confidence 555543
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=6.7e-18 Score=188.02 Aligned_cols=227 Identities=18% Similarity=0.146 Sum_probs=174.8
Q ss_pred cccCCCCccchhHH----HHhcCCC-CCcEEEccCCCCCCCCCccCCCC-----CCCcEEEeeCCCCCccchhhHHhh--
Q 002227 67 VSDLGDHRALEQLR----RILKLLT-SLKVVSALPPPARDPTPLSLLPF-----CRLKVLELRGCDLSTSAAKGLLEL-- 134 (950)
Q Consensus 67 vLdLs~n~~l~~Lp----~~L~~L~-~L~~LdLs~N~L~~~iP~sL~~L-----~nL~~LdLS~N~Ls~~lP~sL~~L-- 134 (950)
.+|+++|......+ ..+..++ +|+.|+|++|.+.+..+..|..+ ++|++|+|++|.+++..+..+...
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 35666665443333 7788898 89999999999988877777765 999999999999988777766665
Q ss_pred ---hhhhhhhhccCCCccchhhhccccccccCCCC-CCCccEEEccCCcCc-----cchhhcCCCC-CCcEEEccCCCCC
Q 002227 135 ---RHTLEKIICHNSTNALRHVFASRIVEIKDSPQ-WNRLSFVSCSCNRLV-----IMDESLQLLP-AVETLDLSRNKFA 204 (950)
Q Consensus 135 ---~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~-L~~L~~L~Ls~N~Lt-----~LP~sL~~L~-~L~~LdLS~N~Lt 204 (950)
+.|..+.+.+|.+.......... .+.. .++|++|+|++|.|+ .++..+..++ +|++|+|++|+|+
T Consensus 106 ~~~~~L~~L~Ls~N~l~~~~~~~l~~-----~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFSSKSSSEFKQ-----AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHH-----HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hCCCCccEEECcCCcCCcHHHHHHHH-----HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 78999999999876654322111 0122 258999999999998 5556667776 9999999999998
Q ss_pred CCc------CcCCC-CCCcEEECCCCCccc-----ccccccc-ccceeEEEecCCCCCCcc------cCCCCCCCCEEEc
Q 002227 205 KVD------NLRKC-VNLKHLDLGFNNLRS-----IAAFSEV-SCHIVKLVLRNNALTTLR------GIENLKSLEGLDI 265 (950)
Q Consensus 205 ~l~------~L~~L-~~L~~LdLS~N~L~~-----L~~l~~~-L~~L~~L~Ls~N~Ls~Lp------~L~~L~sL~~LdL 265 (950)
... .+..+ ++|+.|+|++|.|+. ++..... .++|+.|+|++|.|+..+ .+..+++|+.|+|
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 753 34555 599999999999997 4443333 358999999999998853 4678899999999
Q ss_pred cCCCCCCCchh------hhcCCCCCCcEEEecCCCCCCC
Q 002227 266 SYNIISTFSEL------EFLASLPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 266 s~N~Ls~l~~l------~~L~~L~~L~~L~LsgNpLt~~ 298 (950)
++|.+..+... ..+..+++|+.|++++|++...
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99997766532 2466788999999999999755
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.2e-19 Score=215.38 Aligned_cols=202 Identities=20% Similarity=0.185 Sum_probs=149.6
Q ss_pred CCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-Cccchhhh-----ccccccccCCCCCCCccEEE-------
Q 002227 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVF-----ASRIVEIKDSPQWNRLSFVS------- 174 (950)
Q Consensus 108 ~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~-L~sL~~l~-----~~~i~~L~~L~~L~~L~~L~------- 174 (950)
..+++|+.|+|++|.|+ .+|..++.++.|.++.+.+|. +..++... .+.++ ..+..+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~--~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK--ETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH--HHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH--HHHHHHHhcccCcchhhccc
Confidence 45677777777777775 467777777777777764442 00000000 00000 0011233444444
Q ss_pred -------ccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCC
Q 002227 175 -------CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (950)
Q Consensus 175 -------Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~ 247 (950)
+.+|.|+.+|. ..|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.
T Consensus 423 ~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred chhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC
Confidence 34444444432 258999999999999988999999999999999999998888888999999999999
Q ss_pred CCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCccccc
Q 002227 248 LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (950)
Q Consensus 248 Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~L 317 (950)
|+.+|.+..+++|+.|+|++|.|++++....+..+++|+.|+|++|+|+..+......+..++.|+.|+|
T Consensus 498 l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999999999999841267899999999999999999887777677777888887753
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-17 Score=179.23 Aligned_cols=171 Identities=21% Similarity=0.203 Sum_probs=121.3
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCC
Q 002227 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (950)
Q Consensus 86 L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~ 165 (950)
+.+|..+++..|.+.+.. .+..+++|++|+|++|.++. ++ .+.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~--------------------------------- 60 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQ--------------------------------- 60 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGG---------------------------------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHh---------------------------------
Confidence 334555556666665332 45566777777777776654 22 111
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecC
Q 002227 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~ 245 (950)
.+++|+.|+|++|.|+.+|. +..+++|+.|+|++|+++.++.+.. ++|+.|+|++|.|+.++. +..+++|+.|+|++
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTT
T ss_pred hCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCC
Confidence 23467777777777777766 7777788888888888777766555 778888888888877754 44567888888888
Q ss_pred CCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 246 NALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 246 N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
|+|+.++.+..+++|+.|+|++|.|+++ ..+..+++|+.|++++|++++.+
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCc
Confidence 8888877777888888888888888876 34677888888888888887764
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.1e-17 Score=182.63 Aligned_cols=238 Identities=16% Similarity=0.140 Sum_probs=172.0
Q ss_pred cccCCCCccchhHHHHhcCC--CCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCcc-chhhHHhhhhhhhhhhc
Q 002227 67 VSDLGDHRALEQLRRILKLL--TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKIIC 143 (950)
Q Consensus 67 vLdLs~n~~l~~Lp~~L~~L--~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~-lP~sL~~L~~Ll~LlL~ 143 (950)
.+|++++... +..+..+ ++|+.|++.+|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|..+.+.
T Consensus 51 ~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 51 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp EEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4566666544 4556666 8999999999999877665 56799999999999999875 77788888888888888
Q ss_pred cCCCccchhhhccccccccCCCCCCCccEEEccCC-cCc--cchhhcCCCCCCcEEEccCC-CCCC--Cc-CcCCCC-CC
Q 002227 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLV--IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCV-NL 215 (950)
Q Consensus 144 ~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N-~Lt--~LP~sL~~L~~L~~LdLS~N-~Lt~--l~-~L~~L~-~L 215 (950)
+|.+..... .. +..+++|++|++++| .++ .++..+..+++|++|+|++| .++. ++ .+..++ +|
T Consensus 127 ~~~l~~~~~---~~------l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 127 GLRLSDPIV---NT------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TCBCCHHHH---HH------HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CcccCHHHH---HH------HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 886543211 11 134678999999988 677 46777888889999999998 8875 33 466778 89
Q ss_pred cEEECCCCC--c--cccccccccccceeEEEecCCC-CCC--cccCCCCCCCCEEEccCCC-CCCCchhhhcCCCCCCcE
Q 002227 216 KHLDLGFNN--L--RSIAAFSEVSCHIVKLVLRNNA-LTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLN 287 (950)
Q Consensus 216 ~~LdLS~N~--L--~~L~~l~~~L~~L~~L~Ls~N~-Ls~--Lp~L~~L~sL~~LdLs~N~-Ls~l~~l~~L~~L~~L~~ 287 (950)
+.|+|++|. + ..++.....+++|+.|+|++|. ++. ++.+..+++|+.|+|++|. +.. ..+..+..+++|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCE
Confidence 999999984 4 3455555567889999999988 554 4577888899999999885 322 22245778889999
Q ss_pred EEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 288 L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
|+|++| +.... ...+. ..+..|.+++|.++.
T Consensus 277 L~l~~~-i~~~~---~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 277 LQVFGI-VPDGT---LQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp EECTTS-SCTTC---HHHHH--HHSTTSEESCCCSCC
T ss_pred EeccCc-cCHHH---HHHHH--hhCcceEEecccCcc
Confidence 999988 44221 11111 225556678888764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=8.1e-17 Score=178.66 Aligned_cols=223 Identities=14% Similarity=0.042 Sum_probs=167.3
Q ss_pred chhHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccch-hhHHhhhhhhhhh-hccCCCccchhh
Q 002227 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKI-ICHNSTNALRHV 153 (950)
Q Consensus 76 l~~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP-~sL~~L~~Ll~Ll-L~~N~L~sL~~l 153 (950)
+..+|..+ .++|+.|+|++|.|+...+.+|.++++|++|+|++|.+.+.+| ..|.+++.+++++ +..|++..+...
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 44555543 3578999999999987666789999999999999999876555 4567777776544 445777666442
Q ss_pred hccccccccCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccC-CCCCCCc--CcCCC-CCCcEEECCCCCcccc
Q 002227 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKC-VNLKHLDLGFNNLRSI 228 (950)
Q Consensus 154 ~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L-~~L~~LdLS~N~L~~L 228 (950)
. +..+++|++|++++|+|+.+|+ .+.....+..|++.+ |.+..++ .|..+ ..|+.|+|++|+|+.+
T Consensus 99 ~---------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 99 A---------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp S---------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred h---------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 2 2467799999999999998765 455666788888865 6787764 45555 4688999999999999
Q ss_pred ccccccccceeEEEec-CCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCC-CCCCcccchh
Q 002227 229 AAFSEVSCHIVKLVLR-NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNP-LCCSRWYRAQ 304 (950)
Q Consensus 229 ~~l~~~L~~L~~L~Ls-~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNp-Lt~~~~~r~~ 304 (950)
+...+...+|+.|++. +|.++.++ .|..+++|+.|+|++|+|+.+|. ..+.+|+.|.+.++. +...|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP----- 240 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP----- 240 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC-----
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC-----
Confidence 8766666889999997 57888886 57899999999999999999984 345667777665543 44334
Q ss_pred HhhccCCCcccccC
Q 002227 305 VFSYFAHPAKLKVD 318 (950)
Q Consensus 305 ~~~~L~~L~~L~Ld 318 (950)
.+..++.|+.+.+.
T Consensus 241 ~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 241 TLEKLVALMEASLT 254 (350)
T ss_dssp CTTTCCSCCEEECS
T ss_pred CchhCcChhhCcCC
Confidence 24567778888775
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2.1e-16 Score=171.48 Aligned_cols=185 Identities=22% Similarity=0.244 Sum_probs=157.3
Q ss_pred EccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccE
Q 002227 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (950)
Q Consensus 93 dLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~ 172 (950)
.+..+.+.+.. .+..+++|+.|++++|.+... + .+ ..+++|+.
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~---------------------------------~~l~~L~~ 72 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GI---------------------------------QYLPNVTK 72 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TG---------------------------------GGCTTCCE
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hH---------------------------------hcCCCCCE
Confidence 45555555432 345678899999999888652 2 12 23468999
Q ss_pred EEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc
Q 002227 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (950)
Q Consensus 173 L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp 252 (950)
|++++|.++.++. +..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.++. ...+++|+.|+|++|.|+.++
T Consensus 73 L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 73 LFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT 150 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCcch
Confidence 9999999999877 99999999999999999999999999999999999999999854 446789999999999999999
Q ss_pred cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 253 ~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|.++..+ .+..++.|+.++|++|++..
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~-----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh-----hhccCCCCCEEECcCCcccC
Confidence 99999999999999999999874 889999999999999998653 26788999999999999864
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.6e-16 Score=170.06 Aligned_cols=171 Identities=19% Similarity=0.297 Sum_probs=148.6
Q ss_pred hhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCC
Q 002227 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKC 212 (950)
Q Consensus 133 ~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L 212 (950)
.+..+..+.+..|.+..+.. +..+++|+.|++++|.|+.+| .+..+++|+.|+|++|+|+.++.+..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~-----------~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS-----------QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC-----------HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred HHHHHHHHHhcCCCcccccc-----------hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccC
Confidence 45566677777776665542 124578999999999999997 788999999999999999998779999
Q ss_pred CCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecC
Q 002227 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (950)
Q Consensus 213 ~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~Lsg 292 (950)
++|+.|+|++|+|+.++.... ++|+.|+|++|.|+.++.+..+++|+.|+|++|+|++++ .+..+++|+.|+|++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCC
Confidence 999999999999999887655 899999999999999999999999999999999999985 478899999999999
Q ss_pred CCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 293 NPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 293 NpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
|+++.. ..+..++.|+.++|.+|+++..
T Consensus 160 N~i~~~-----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT-----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC-----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch-----HHhccCCCCCEEeCCCCcccCC
Confidence 999865 3466788999999999998753
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=2.1e-16 Score=176.31 Aligned_cols=175 Identities=26% Similarity=0.271 Sum_probs=121.0
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCC
Q 002227 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (950)
Q Consensus 90 ~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~ 169 (950)
+.++++++.++ .+|..+. +.|+.|+|++|.|++..+..+. ..+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~--------------------------------~~l~~ 65 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTP--------------------------------TRLTN 65 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSS--------------------------------SCCTT
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhh--------------------------------hcccc
Confidence 56778777776 3555543 4578888888888763332221 03457
Q ss_pred ccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccc-cccccccceeEEEecC
Q 002227 170 LSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (950)
Q Consensus 170 L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~ 245 (950)
|+.|+|++|+|+.++. .|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|.|..++ ..+..+++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 7888888888887654 5777888888888888887764 4777788888888888887764 3445567777788877
Q ss_pred CCCCCcc--cC---CCCCCCCEEEccCCCCCCCchhhhcCCCCC--CcEEEecCCCCCCCcc
Q 002227 246 NALTTLR--GI---ENLKSLEGLDISYNIISTFSELEFLASLPY--LLNLWLEGNPLCCSRW 300 (950)
Q Consensus 246 N~Ls~Lp--~L---~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~--L~~L~LsgNpLt~~~~ 300 (950)
|+|+.++ .+ ..+++|+.|+|++|.|+.++. ..+..++. |+.|+|.+|||.|.+.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcC
Confidence 7777765 23 457788888888888887764 45566665 3677788888777764
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=8.6e-16 Score=182.55 Aligned_cols=163 Identities=23% Similarity=0.246 Sum_probs=131.8
Q ss_pred CCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCccchhhcCCCC
Q 002227 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLP 191 (950)
Q Consensus 112 nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~ 191 (950)
+|+.|+|++|.|++ +|..+ +++|+.|+|++|.|+.+| ..++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-----------------------------------~~~L~~L~Ls~N~l~~ip---~~l~ 100 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-----------------------------------PPQITVLEITQNALISLP---ELPA 100 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-----------------------------------CTTCSEEECCSSCCSCCC---CCCT
T ss_pred CccEEEeCCCCCCc-cCHhH-----------------------------------cCCCCEEECcCCCCcccc---cccC
Confidence 88888888888876 44221 147999999999999998 5689
Q ss_pred CCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcccCCCCCCCCEEEccCCCCC
Q 002227 192 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (950)
Q Consensus 192 ~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls 271 (950)
+|+.|+|++|.|+.+|.+.. +|+.|+|++|.|+.++. .+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+
T Consensus 101 ~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 101 SLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp TCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCC
Confidence 99999999999999887544 99999999999999887 56899999999999999886 6789999999999999
Q ss_pred CCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 272 ~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
.+|. +. ++|+.|+|++|.|+..+.+....+...+.++.|+|++|.++..
T Consensus 174 ~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l 222 (571)
T 3cvr_A 174 FLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222 (571)
T ss_dssp CCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCC
T ss_pred Ccch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceec
Confidence 9884 44 8999999999999976642111111122239999999999853
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=2e-16 Score=189.27 Aligned_cols=190 Identities=21% Similarity=0.230 Sum_probs=157.8
Q ss_pred CcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCC
Q 002227 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (950)
Q Consensus 89 L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~ 168 (950)
+..+.|..+.+.+..+ +..|++|+.|+|++|.|.. +| .+ ..++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l---------------------------------~~l~ 65 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GI---------------------------------QYLP 65 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TG---------------------------------GGCT
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HH---------------------------------ccCC
Confidence 3344555555554332 4566777777777777754 11 11 2456
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCC
Q 002227 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~L 248 (950)
+|+.|+|++|.|..+++ +..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|..++. +..+++|+.|+|++|.|
T Consensus 66 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp TCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC
T ss_pred CCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc
Confidence 89999999999998876 89999999999999999999999999999999999999999865 45679999999999999
Q ss_pred CCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 249 TTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 249 s~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
+.++.+..+++|+.|+|++|.|..+++ +..+++|+.|+|++|+|...+ .+..++.|+.|.|++|++...
T Consensus 144 ~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~-----~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 144 TDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEECCSEEEECC
T ss_pred CCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEccCCcCcCC
Confidence 999999999999999999999999874 889999999999999998653 367789999999999998753
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.2e-15 Score=159.55 Aligned_cols=131 Identities=24% Similarity=0.341 Sum_probs=99.6
Q ss_pred CCccEEEccCCcCccc-hhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEe
Q 002227 168 NRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~L 243 (950)
++|+.|+|++|.|+.+ |..|..+++|+.|+|++|+|..++ .|..+++|+.|+|++|.|+.+++. +..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4677888888888766 456777888888888888887765 367778888888888888877653 345678888888
Q ss_pred cCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 244 s~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
++|+|+.+| .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|.+|++.|.+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCc
Confidence 888888775 66777888888888888887765 55777788888888888887775
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=2.4e-15 Score=156.54 Aligned_cols=130 Identities=20% Similarity=0.309 Sum_probs=75.6
Q ss_pred CccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCccccccc-cccccceeEEEec
Q 002227 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls 244 (950)
+|+.|++++|.|+.+|. .|..+++|+.|+|++|+|+.+ ..|..+++|++|+|++|.|+.++.. +..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 55666666666665544 455566666666666666554 2455666666666666666655542 2345566666666
Q ss_pred CCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 245 ~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
+|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCC
Confidence 66666542 45556666666666666666553 34555666666666666665554
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.6e-15 Score=154.57 Aligned_cols=124 Identities=15% Similarity=0.232 Sum_probs=67.5
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCC--CcCcCCCCCCcEEECCCCCccc-cccccccccceeEEEecC
Q 002227 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~--l~~L~~L~~L~~LdLS~N~L~~-L~~l~~~L~~L~~L~Ls~ 245 (950)
+|++|++++|.++.++ .+..+++|++|++++|.++. ++.+..+++|++|+|++|.++. .+..+..+++|+.|+|++
T Consensus 67 ~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 67 NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 3444444444444332 34445555555555555554 3345555556666666665554 222333445666666666
Q ss_pred CC-CCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 246 NA-LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 246 N~-Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
|. ++.++.+..+++|+.|+|++|.|++++ .+..+++|+.|++++|+|.
T Consensus 146 n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 146 NGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred CCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 65 555555666666666666666666654 3556666777777777664
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=3e-15 Score=155.90 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=134.8
Q ss_pred cEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCC
Q 002227 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNA 247 (950)
Q Consensus 171 ~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~ 247 (950)
+.++++++.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+. ..+..+++|+.|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578999999999998664 78999999999999875 7899999999999999999884 456678999999999999
Q ss_pred CCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 248 Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|+.++|.+|++.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCCC
Confidence 99986 47899999999999999999875 67899999999999999998765 34577788999999999999887
Q ss_pred HHHH
Q 002227 326 ELWE 329 (950)
Q Consensus 326 e~~~ 329 (950)
....
T Consensus 168 c~l~ 171 (220)
T 2v9t_B 168 CHLK 171 (220)
T ss_dssp GGGH
T ss_pred CccH
Confidence 6544
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.2e-17 Score=198.19 Aligned_cols=200 Identities=17% Similarity=0.091 Sum_probs=156.3
Q ss_pred cCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCC-------------CCccchhhHHhhhhhhhhh-hccCCCcc
Q 002227 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-------------LSTSAAKGLLELRHTLEKI-ICHNSTNA 149 (950)
Q Consensus 84 ~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~-------------Ls~~lP~sL~~L~~Ll~Ll-L~~N~L~s 149 (950)
..+++|+.|+|++|.+. .+|..|+.+++|+.|++++|. +.+..|..+..+++|..+. +..|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666666666665 556666666666666665553 5567788888888888887 66666555
Q ss_pred chhhhcc--ccccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcc
Q 002227 150 LRHVFAS--RIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR 226 (950)
Q Consensus 150 L~~l~~~--~i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~ 226 (950)
++..... .+..++. ..|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+
T Consensus 425 L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhcccccccCc----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 5543221 2332221 259999999999999987 999999999999999999986 7999999999999999999
Q ss_pred ccccccccccceeEEEecCCCCCCc--c-cCCCCCCCCEEEccCCCCCCCchh--hhcCCCCCCcEEEe
Q 002227 227 SIAAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWL 290 (950)
Q Consensus 227 ~L~~l~~~L~~L~~L~Ls~N~Ls~L--p-~L~~L~sL~~LdLs~N~Ls~l~~l--~~L~~L~~L~~L~L 290 (950)
++| .+..+++|+.|+|++|.|+.+ | .+..+++|+.|+|++|.|+++++. ..+..+|+|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 998 566789999999999999997 5 789999999999999999987642 22445899999864
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=1.3e-15 Score=155.12 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=130.6
Q ss_pred CCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccc-cccccccccceeEEEec
Q 002227 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLR 244 (950)
Q Consensus 166 ~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~-L~~l~~~L~~L~~L~Ls 244 (950)
.+++|+.|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|++|+|++|.++. .+..+..+++|+.|+|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3568999999999999998 789999999999999999999999999999999999999997 44556678999999999
Q ss_pred CCCCCC--cccCCCCCCCCEEEccCCC-CCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCc
Q 002227 245 NNALTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (950)
Q Consensus 245 ~N~Ls~--Lp~L~~L~sL~~LdLs~N~-Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~ 321 (950)
+|.++. ++.+..+++|++|+|++|. ++.++ .+..+++|+.|++++|+++..+ .+..++.|+.+++++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEEEeeCcc
Confidence 999998 4578999999999999998 88876 4788999999999999998654 46678999999999999
Q ss_pred CCh
Q 002227 322 IST 324 (950)
Q Consensus 322 Is~ 324 (950)
|..
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=155.22 Aligned_cols=131 Identities=21% Similarity=0.306 Sum_probs=105.1
Q ss_pred CccEEEccCCcCccchh--hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEe
Q 002227 169 RLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~L 243 (950)
.++.|+|++|.|+.++. .|..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++. +..+++|+.|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 46788888888887743 4778888888888888888764 588888888888888888887653 556788888888
Q ss_pred cCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 244 s~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+|.|.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCc
Confidence 888888863 67888888888888888888754 667888888888888888888764
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.3e-15 Score=168.85 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=177.2
Q ss_pred cEEEecCCCccchhhhhhhccccccccCCCCccccccccccCCCCccchhHHH-HhcCCCCCcEEEccCCCCCCCCC-cc
Q 002227 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTP-LS 106 (950)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~~L~l~vLdLs~n~~l~~Lp~-~L~~L~~L~~LdLs~N~L~~~iP-~s 106 (950)
.+++....+|..||..+. .+ +..++|++|+ +..+|. .|.++++|+.|+|++|.+.+.+| .+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~--------------l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RN--------------AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TT--------------CSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCCccCcCcC--CC--------------CCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 356677778888886542 11 2235566665 455664 68999999999999999876554 57
Q ss_pred CCCCCCCcE-EEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccC-CcCccch
Q 002227 107 LLPFCRLKV-LELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMD 184 (950)
Q Consensus 107 L~~L~nL~~-LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~-N~Lt~LP 184 (950)
|.++++|.. +.+.+|+|+...|..|..+++|..+.+.+|.+..++...+ ....++..|++.+ +.+..+|
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~---------~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK---------IHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT---------CCBSSCEEEEEESCTTCCEEC
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh---------cccchhhhhhhcccccccccc
Confidence 889988775 6777899999888899999999999999998877654321 1334678888855 6888887
Q ss_pred h-hcCCCC-CCcEEEccCCCCCCCc-CcCCCCCCcEEECC-CCCcccccc-ccccccceeEEEecCCCCCCcccCCCCCC
Q 002227 185 E-SLQLLP-AVETLDLSRNKFAKVD-NLRKCVNLKHLDLG-FNNLRSIAA-FSEVSCHIVKLVLRNNALTTLRGIENLKS 259 (950)
Q Consensus 185 ~-sL~~L~-~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS-~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp~L~~L~s 259 (950)
. .|..+. .++.|+|++|+|+.++ ......+|+.|+++ +|.++.++. .+..+++|+.|+|++|+|+.+|. ..+.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhcc
Confidence 5 455554 6899999999999885 44566789999997 478999986 45678999999999999999973 33556
Q ss_pred CCEEEccC-CCCCCCchhhhcCCCCCCcEEEecCC
Q 002227 260 LEGLDISY-NIISTFSELEFLASLPYLLNLWLEGN 293 (950)
Q Consensus 260 L~~LdLs~-N~Ls~l~~l~~L~~L~~L~~L~LsgN 293 (950)
|+.|.+.+ +.++.+|. +..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCC---TTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCC---chhCcChhhCcCCCC
Confidence 66776544 46777764 678999999999643
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=7.6e-15 Score=152.77 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=134.3
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc---CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecC
Q 002227 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (950)
Q Consensus 170 L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~ 245 (950)
-+.+++++|.++.+|..+. +.++.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3589999999999997653 46799999999999873 48899999999999999999876 566789999999999
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+... ...|..++.|+.++|.+|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCc
Confidence 9999985 58999999999999999999865 67889999999999999998763 255778899999999999999
Q ss_pred hhHHHH
Q 002227 324 TRELWE 329 (950)
Q Consensus 324 ~~e~~~ 329 (950)
+.....
T Consensus 167 c~c~l~ 172 (220)
T 2v70_A 167 CNCYLA 172 (220)
T ss_dssp CSGGGH
T ss_pred CCCchH
Confidence 876544
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=4.8e-15 Score=165.25 Aligned_cols=157 Identities=23% Similarity=0.246 Sum_probs=133.5
Q ss_pred CccEEEccCCcCccchhh-cC-CCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEe
Q 002227 169 RLSFVSCSCNRLVIMDES-LQ-LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~s-L~-~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~L 243 (950)
.|+.|+|++|+|+.++.. +. .+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.++. .+..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 588999999999988764 55 8999999999999999875 69999999999999999999876 4567899999999
Q ss_pred cCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhc---CCCCCCcEEEecCCCCCCCcccchhHhhccCC--Ccccc
Q 002227 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFL---ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLK 316 (950)
Q Consensus 244 s~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L---~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~--L~~L~ 316 (950)
++|.|+.++ .|..+++|+.|+|++|.|+.++. ..+ ..+++|+.|+|++|.|+..+ ...+..++. ++.+.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEE
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEE
Confidence 999999973 78999999999999999999885 444 57999999999999998665 344555655 37799
Q ss_pred cCCCcCChhHHHH
Q 002227 317 VDGKEISTRELWE 329 (950)
Q Consensus 317 LdgN~Is~~e~~~ 329 (950)
|++|++.|.....
T Consensus 196 l~~N~~~C~C~l~ 208 (361)
T 2xot_A 196 LHNNPLECDCKLY 208 (361)
T ss_dssp CCSSCEECCHHHH
T ss_pred ecCCCccCCcCcH
Confidence 9999999887543
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=3.1e-16 Score=171.06 Aligned_cols=223 Identities=16% Similarity=0.122 Sum_probs=175.9
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCC--CCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCcc--chhhhccccccc
Q 002227 86 LTSLKVVSALPPPARDPTPLSLLPF--CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA--LRHVFASRIVEI 161 (950)
Q Consensus 86 L~~L~~LdLs~N~L~~~iP~sL~~L--~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~s--L~~l~~~~i~~L 161 (950)
-..++.|++++|.+. |..+..+ ++|+.|++++|.+.+..+. +..+++|..+.+.+|.+.. ++..+
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~------- 114 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL------- 114 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-------
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-------
Confidence 345899999998876 5667777 8999999999999886654 5678899999999987543 22221
Q ss_pred cCCCCCCCccEEEccCCcCc-cchhhcCCCCCCcEEEccCC-CCCC--Cc-CcCCCCCCcEEECCCC-Cccc--cccccc
Q 002227 162 KDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCVNLKHLDLGFN-NLRS--IAAFSE 233 (950)
Q Consensus 162 ~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~L~~L~~LdLS~N-~Lt~--l~-~L~~L~~L~~LdLS~N-~L~~--L~~l~~ 233 (950)
..+++|++|++++|.++ ..+..+..+++|++|+|++| .++. ++ .+..+++|+.|+|++| .++. ++....
T Consensus 115 ---~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 115 ---SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp ---TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred ---hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 35679999999999998 66778999999999999999 6874 44 4778899999999999 8885 555566
Q ss_pred ccc-ceeEEEecCC--CCCC--cc-cCCCCCCCCEEEccCCC-CCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHh
Q 002227 234 VSC-HIVKLVLRNN--ALTT--LR-GIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (950)
Q Consensus 234 ~L~-~L~~L~Ls~N--~Ls~--Lp-~L~~L~sL~~LdLs~N~-Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~ 306 (950)
.++ +|++|+|++| .++. ++ .+..+++|+.|+|++|. ++.. .+..+..+++|+.|+|++|.-. .......+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~l 268 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDI--IPETLLEL 268 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTC--CGGGGGGG
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCCCCC--CHHHHHHH
Confidence 778 9999999999 4543 44 56779999999999999 6643 3367889999999999999621 11122346
Q ss_pred hccCCCcccccCCCcCChhH
Q 002227 307 SYFAHPAKLKVDGKEISTRE 326 (950)
Q Consensus 307 ~~L~~L~~L~LdgN~Is~~e 326 (950)
..++.|+.|.|.++ ++...
T Consensus 269 ~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp GGCTTCCEEECTTS-SCTTC
T ss_pred hcCCCCCEEeccCc-cCHHH
Confidence 77999999999999 66543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.1e-14 Score=152.20 Aligned_cols=151 Identities=22% Similarity=0.249 Sum_probs=133.4
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEecC
Q 002227 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~ 245 (950)
..+.++++++.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.++.. +..+++|+.|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 46789999999999997654 89999999999999973 688999999999999999998854 46789999999999
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCC
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is 323 (950)
|+|+.++ .+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|...+. ..+..++.|+.+.|.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC--cccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCcc
Confidence 9999986 4789999999999999999987 567899999999999999986652 45778899999999999999
Q ss_pred hhH
Q 002227 324 TRE 326 (950)
Q Consensus 324 ~~e 326 (950)
+..
T Consensus 173 c~c 175 (229)
T 3e6j_A 173 CEC 175 (229)
T ss_dssp TTB
T ss_pred CCc
Confidence 764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=9.3e-15 Score=149.54 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCccEEEccCCcCccchhh-cCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEe
Q 002227 168 NRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~s-L~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~L 243 (950)
++|++|++++|.|+.+|.. +..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.++.. +..+++|+.|+|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 3455555555555544332 344555555555555555443 244445555555555554444332 223344444444
Q ss_pred cCCCCCCcccCCCCCCCCEEEccCCCCC
Q 002227 244 RNNALTTLRGIENLKSLEGLDISYNIIS 271 (950)
Q Consensus 244 s~N~Ls~Lp~L~~L~sL~~LdLs~N~Ls 271 (950)
++|.+. ..+++|+.|+++.|.++
T Consensus 156 ~~N~~~-----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 156 HDNPWD-----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CSCCBC-----CCTTTTHHHHHHHHHCT
T ss_pred cCCCee-----cCCCCHHHHHHHHHhCC
Confidence 444332 22334444444444444
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-14 Score=147.85 Aligned_cols=131 Identities=23% Similarity=0.369 Sum_probs=108.3
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEe
Q 002227 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~L 243 (950)
++|++|++++|.++.++. .+..+++|++|+|++|+++.++ .|..+++|++|+|++|.|+.++.. +..+++|+.|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 478899999999887765 4678889999999999988875 367888999999999998887754 456788999999
Q ss_pred cCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 244 s~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecCC
Confidence 999998875 47888899999999999988775 55788889999999999887654
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.3e-16 Score=162.78 Aligned_cols=162 Identities=31% Similarity=0.405 Sum_probs=139.0
Q ss_pred CccEEEccCC--cCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCC
Q 002227 169 RLSFVSCSCN--RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (950)
Q Consensus 169 ~L~~L~Ls~N--~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N 246 (950)
.|+.+.+.++ .++.+|..+..+++|++|+|++|.++.++.+..+++|+.|+|++|.|+.++.....+++|+.|+|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 4566666554 66778889999999999999999999999888999999999999999999887777799999999999
Q ss_pred CCCCcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCC-------cccchhHhhccCCCcccccCC
Q 002227 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-------RWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 247 ~Ls~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~-------~~~r~~~~~~L~~L~~L~Ldg 319 (950)
.|+.++.+..+++|+.|+|++|.|+.++.+..+..+++|+.|++++|++.+. ..++...+..++.|+. ||+
T Consensus 104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~--Ld~ 181 (198)
T 1ds9_A 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK--LDG 181 (198)
T ss_dssp ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE--ECC
T ss_pred cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE--ECC
Confidence 9999988888999999999999999987666789999999999999999765 3344555777777775 569
Q ss_pred CcCChhHHHHHHH
Q 002227 320 KEISTRELWERQL 332 (950)
Q Consensus 320 N~Is~~e~~~~~~ 332 (950)
++++..++..+.+
T Consensus 182 ~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 182 MPVDVDEREQANV 194 (198)
T ss_dssp GGGTTTTTTHHHH
T ss_pred cccCHHHHHHHHh
Confidence 9999888777644
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=2.8e-14 Score=141.09 Aligned_cols=133 Identities=19% Similarity=0.163 Sum_probs=114.4
Q ss_pred CCCccEEEccCCcCc--cchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccc-cccccccccceeEEEe
Q 002227 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~-L~~l~~~L~~L~~L~L 243 (950)
.++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+.++.+..+++|++|+|++|.|.. ++.....+++|+.|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 468999999999998 8888888999999999999999988888899999999999999998 5555555789999999
Q ss_pred cCCCCCCcc---cCCCCCCCCEEEccCCCCCCCchh--hhcCCCCCCcEEEecCCCCCCCc
Q 002227 244 RNNALTTLR---GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 244 s~N~Ls~Lp---~L~~L~sL~~LdLs~N~Ls~l~~l--~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
++|.|+.++ .+..+++|+.|+|++|.|+.++.. ..+..+++|+.|++.+|.+...+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999998863 678889999999999999988741 36788999999999999886554
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=6.5e-14 Score=142.57 Aligned_cols=127 Identities=25% Similarity=0.328 Sum_probs=112.7
Q ss_pred cEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc---CcCCCCCCcEEECCCCCccccc-cccccccceeEEEecCC
Q 002227 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNN 246 (950)
Q Consensus 171 ~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N 246 (950)
+.|++++|+|+.+|..+.. +|+.|+|++|.|+.++ .+..+++|++|+|++|.|+.+. ..+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999986643 8999999999999875 2889999999999999999984 45667899999999999
Q ss_pred CCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 247 ALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 247 ~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
+|+.++ .+..+++|+.|+|++|+|+++.+ ..+..+++|+.|+|++|+|.|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence 999975 58899999999999999998764 678899999999999999998874
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=7.2e-14 Score=142.79 Aligned_cols=127 Identities=28% Similarity=0.374 Sum_probs=111.6
Q ss_pred cEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCC
Q 002227 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (950)
Q Consensus 171 ~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~L 248 (950)
+.+++++|.|+.+|..+ .++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 67899999999998765 368999999999999885 78889999999999999999875 456778999999999999
Q ss_pred CCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 249 TTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 249 s~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
+.++ .|..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCc
Confidence 9975 68899999999999999999875 568889999999999999998874
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.1e-14 Score=142.47 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=87.9
Q ss_pred CCCCCCcEEEccCCCCCCCcCcCCCC-CCcEEECCCCCccccccccccccceeEEEecCCCCCCcc-c-CCCCCCCCEEE
Q 002227 188 QLLPAVETLDLSRNKFAKVDNLRKCV-NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G-IENLKSLEGLD 264 (950)
Q Consensus 188 ~~L~~L~~LdLS~N~Lt~l~~L~~L~-~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp-~-L~~L~sL~~Ld 264 (950)
..+++|+.|++++|.++.++.+..+. +|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++ . +..+++|+.|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34445555555555555554444443 566666666665555 23334456666666666666654 2 36677788888
Q ss_pred ccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 265 ISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 265 Ls~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
|++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..++.|+.+++.+|.+..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888777755567788888888888888877666655667778888887777776543
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=1.8e-14 Score=169.05 Aligned_cols=297 Identities=12% Similarity=0.031 Sum_probs=161.1
Q ss_pred ccCCcEEEecCCCccc-----hhhhhhhccccccccCC-CCcc-------------ccccccccCCCCccchhHHHHhcC
Q 002227 25 IEGSIVLKLNPAGLHY-----VQSRLEALRELERLLAG-APLD-------------YLRAYVSDLGDHRALEQLRRILKL 85 (950)
Q Consensus 25 L~~l~~L~L~~~~L~~-----Lp~~L~~L~~Le~L~~~-~~L~-------------~L~l~vLdLs~n~~l~~Lp~~L~~ 85 (950)
+..++.|++..+.+.. ++..+..++.|+.|... ..+. .-.+..+++++|. +..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhh
Confidence 3567888888876432 22233334444443321 1110 0123345666654 3447777777
Q ss_pred CCCCcEEEccCCCCC---CCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhh-hccccccc
Q 002227 86 LTSLKVVSALPPPAR---DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHV-FASRIVEI 161 (950)
Q Consensus 86 L~~L~~LdLs~N~L~---~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l-~~~~i~~L 161 (950)
+++|+.|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|..+.+.+|.+...... ....++.+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 788888877642211 12333444555555555555422 23444555555555555555543211100 00000000
Q ss_pred c--------------C-CCCCCCccEEEcc-----------CCcCc--cchhhcCCCCCCcEEEccCCCCCCC--cCcCC
Q 002227 162 K--------------D-SPQWNRLSFVSCS-----------CNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRK 211 (950)
Q Consensus 162 ~--------------~-L~~L~~L~~L~Ls-----------~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~ 211 (950)
. . ...+++|+.|+++ .|.++ .++..+..+++|+.|+++.|.++.. ..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 0 0 0234567777777 34555 2333344567777777777776642 23333
Q ss_pred -CCCCcEEECC----CCCccccc------cccccccceeEEEecCCC--CCCc--ccC-CCCCCCCEEEccCCCCCCCch
Q 002227 212 -CVNLKHLDLG----FNNLRSIA------AFSEVSCHIVKLVLRNNA--LTTL--RGI-ENLKSLEGLDISYNIISTFSE 275 (950)
Q Consensus 212 -L~~L~~LdLS----~N~L~~L~------~l~~~L~~L~~L~Ls~N~--Ls~L--p~L-~~L~sL~~LdLs~N~Ls~l~~ 275 (950)
+++|+.|+|+ .|.++..| .....+++|+.|+|+.|. ++.. ..+ ..+++|+.|+|++|.+++...
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 6777777775 56666532 223446778888886432 4442 222 346788888888888776433
Q ss_pred hhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChh
Q 002227 276 LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (950)
Q Consensus 276 l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~ 325 (950)
...+..+++|+.|+|++|+++... ....+..++.|+.|+|++|+++..
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERA--IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHH--HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCcccCeeeccCCCCcHHH--HHHHHHhcCccCeeECcCCcCCHH
Confidence 345577888888888888874221 123344677888888888887754
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=1.3e-14 Score=170.20 Aligned_cols=285 Identities=12% Similarity=0.099 Sum_probs=185.9
Q ss_pred cCCcEEEecCCCccchhhhhhhccccccccCCCCcc-------------ccccccccCCCCccchhHHHHhcCCCCCcEE
Q 002227 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLD-------------YLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (950)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~L~-------------~L~l~vLdLs~n~~l~~Lp~~L~~L~~L~~L 92 (950)
..++.|++..+.+..++..+..++.|+.+....... .-.+..+++..+ ....+|..+..+++|+.|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 456677777777777776666666666554421000 001122333332 245567778888899999
Q ss_pred EccCCCCCCCCC-ccCCCCCCCcEEEeeCCCCCc-cchhhHHhhhhhhhhhhcc-----------CCCccchhhhccccc
Q 002227 93 SALPPPARDPTP-LSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICH-----------NSTNALRHVFASRIV 159 (950)
Q Consensus 93 dLs~N~L~~~iP-~sL~~L~nL~~LdLS~N~Ls~-~lP~sL~~L~~Ll~LlL~~-----------N~L~sL~~l~~~~i~ 159 (950)
+|++|.+++..+ ..+..+++|++|+|+ +.+.. .++..+..+++|.++.+.+ |.++.... .
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~------~ 371 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL------I 371 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH------H
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH------H
Confidence 998888654333 335778899999998 44443 3344445677788888773 33322110 0
Q ss_pred cccCCCCCCCccEEEccCCcCc-cchhhcCC-CCCCcEEEcc----CCCCCCCc-------CcCCCCCCcEEECCCCC--
Q 002227 160 EIKDSPQWNRLSFVSCSCNRLV-IMDESLQL-LPAVETLDLS----RNKFAKVD-------NLRKCVNLKHLDLGFNN-- 224 (950)
Q Consensus 160 ~L~~L~~L~~L~~L~Ls~N~Lt-~LP~sL~~-L~~L~~LdLS----~N~Lt~l~-------~L~~L~~L~~LdLS~N~-- 224 (950)
.+ ...+++|+.|++..|.++ ..+..+.. +++|+.|+++ .|.++..| .+..+++|+.|+|++|.
T Consensus 372 ~l--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 372 AL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp HH--HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred HH--HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 00 024679999999999988 33344544 8899999996 77888642 25568999999997643
Q ss_pred ccc--cccccccccceeEEEecCCCCCC--cc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 225 LRS--IAAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 225 L~~--L~~l~~~L~~L~~L~Ls~N~Ls~--Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
++. +......+++|+.|+|++|.++. ++ .+..+++|+.|+|++|.|+.......+..+++|+.|+|++|+++...
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 443 22233446899999999999986 34 45788999999999999865322244567899999999999988653
Q ss_pred ccchhHhhccCCCcccccCCCcC
Q 002227 300 WYRAQVFSYFAHPAKLKVDGKEI 322 (950)
Q Consensus 300 ~~r~~~~~~L~~L~~L~LdgN~I 322 (950)
. ......++.+....++.++.
T Consensus 530 ~--~~l~~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 530 Q--DLMQMARPYWNIELIPSRRV 550 (592)
T ss_dssp T--TGGGGCCTTEEEEEECCC--
T ss_pred H--HHHHHhCCCcEEEEecCccc
Confidence 1 12234567777777776644
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=8.6e-14 Score=134.90 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=97.0
Q ss_pred CCCccEEEccCCcCc--cchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccc-cccccccccceeEEEe
Q 002227 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (950)
Q Consensus 167 L~~L~~L~Ls~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~-L~~l~~~L~~L~~L~L 243 (950)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.++.++.+..+++|+.|+|++|.|+. ++.....+++|+.|+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 357889999999988 8888888889999999999988888778888888888888888887 5555555677888888
Q ss_pred cCCCCCCc---ccCCCCCCCCEEEccCCCCCCCchh--hhcCCCCCCcEEEec
Q 002227 244 RNNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLE 291 (950)
Q Consensus 244 s~N~Ls~L---p~L~~L~sL~~LdLs~N~Ls~l~~l--~~L~~L~~L~~L~Ls 291 (950)
++|.|+.+ ..+..+++|+.|++++|.|+.++.. ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88887775 3567777777777777777776542 346667777777665
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2.5e-14 Score=174.41 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=98.4
Q ss_pred hHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccc
Q 002227 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (950)
Q Consensus 78 ~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~ 157 (950)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~------------------------- 267 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK------------------------- 267 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-------------------------
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-------------------------
Confidence 34455566666666666666655 44444555666666666666665 3444433
Q ss_pred cccccCCCCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCcccccc-ccccc
Q 002227 158 IVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVS 235 (950)
Q Consensus 158 i~~L~~L~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~-l~~~L 235 (950)
.+++|++|+|++|.|+.+|..|..+++|++|+|++|.|+.+| .|..+++|+.|+|++|.|++.++ .+..+
T Consensus 268 --------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 268 --------NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp --------GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred --------CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 345899999999999999999999999999999999999886 68999999999999999997544 22221
Q ss_pred -cceeEEEecCCCCCCcccCCCCCCCCEEEccCC--------CCCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 236 -CHIVKLVLRNNALTTLRGIENLKSLEGLDISYN--------IISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 236 -~~L~~L~Ls~N~Ls~Lp~L~~L~sL~~LdLs~N--------~Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
..+..|+|++|.++... ...|..|+++.| .|..... ..+..+..+....++.|.+.
T Consensus 340 ~~~~~~l~l~~N~l~~~~----p~~l~~l~l~~n~~~~~~~~~l~~~~~-~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPL----PHERRFIEINTDGEPQREYDSLQQSTE-HLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHCCCCCCC----CCC------------------------------------------CCC
T ss_pred chhhhHHhhccCcccCcC----ccccceeEeecccccccccCCcccccc-chhhcccccceeeeeccccc
Confidence 22334788999887631 235677778777 1222111 12334445555666666553
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.2e-13 Score=136.47 Aligned_cols=136 Identities=28% Similarity=0.212 Sum_probs=119.4
Q ss_pred CCCCCCcEEEccCCCCC--CCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCC-cc-cCCCCCCCCE
Q 002227 188 QLLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEG 262 (950)
Q Consensus 188 ~~L~~L~~LdLS~N~Lt--~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~ 262 (950)
..+++|+.|+|++|.++ .++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+. ++ .+..+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44578999999999998 666 458899999999999999998 556677999999999999999 66 4456999999
Q ss_pred EEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCCh
Q 002227 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 263 LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
|+|++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..++.|+.+++.+|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999998766788999999999999999998877666788899999999999998764
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=7.1e-13 Score=132.28 Aligned_cols=128 Identities=23% Similarity=0.376 Sum_probs=111.4
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEecC
Q 002227 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~ 245 (950)
..+.+++++|+++.+|..+ .++|+.|++++|+++.++ .+..+++|+.|+|++|.|+.+++. +..+++|+.|+|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3578999999999998655 478999999999999875 478899999999999999998764 45778999999999
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence 9999976 47889999999999999999875 55788999999999999999875
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.1e-13 Score=138.38 Aligned_cols=132 Identities=21% Similarity=0.196 Sum_probs=114.7
Q ss_pred CCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCcCcCCCCCCcEEECCCCCcccccccc-ccccceeEEEe
Q 002227 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVL 243 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~-~~L~~L~~L~L 243 (950)
..+.+|+.|++++|.++.+|......++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+++.. ..+++|+.|+|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 35679999999999999886544444599999999999999989999999999999999999987543 67899999999
Q ss_pred cCCCCCCcc---cCCCCCCCCEEEccCCCCCCCchh--hhcCCCCCCcEEEecCCCCC
Q 002227 244 RNNALTTLR---GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 244 s~N~Ls~Lp---~L~~L~sL~~LdLs~N~Ls~l~~l--~~L~~L~~L~~L~LsgNpLt 296 (950)
++|.|+.++ .+..+++|+.|+|++|.|+.++.. ..+..+++|+.|++++|++.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999876 578899999999999999987741 14788999999999999875
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=3.6e-13 Score=130.49 Aligned_cols=129 Identities=26% Similarity=0.190 Sum_probs=111.9
Q ss_pred CCCCCcEEEccCCCCC--CCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCC-cc-cCCCCCCCCEE
Q 002227 189 LLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGL 263 (950)
Q Consensus 189 ~L~~L~~LdLS~N~Lt--~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~-Lp-~L~~L~sL~~L 263 (950)
..++|+.|++++|.++ .++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+. +| .+..+++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 565 568899999999999999998 555667999999999999998 66 45569999999
Q ss_pred EccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccC
Q 002227 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (950)
Q Consensus 264 dLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ld 318 (950)
+|++|.|++++....+..+++|+.|++++|+++..+.++...+..++.|+.+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999997655778999999999999999998876666778889999988765
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=8.1e-14 Score=163.25 Aligned_cols=205 Identities=15% Similarity=0.061 Sum_probs=120.9
Q ss_pred CCCCcEEEeeCCCCCccchh-hHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEc---------cCCc
Q 002227 110 FCRLKVLELRGCDLSTSAAK-GLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC---------SCNR 179 (950)
Q Consensus 110 L~nL~~LdLS~N~Ls~~lP~-sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~L---------s~N~ 179 (950)
+++|++|+|++|.+++..+. .+..+++|..+.+.+| +.. . .+..+. ..+++|+.|++ ..+.
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~--~----~l~~l~--~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED--A----GLEVLA--STCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH--H----HHHHHH--HHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH--H----HHHHHH--HhCCCCCEEEEecCcccccccCCC
Confidence 45666666666665542222 2334555555555544 110 0 000000 12456777777 2344
Q ss_pred Ccc--chhhcCCCCCCcEEEccCCCCCCC--cCcC-CCCCCcEEECC--C----CCccccc------cccccccceeEEE
Q 002227 180 LVI--MDESLQLLPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLG--F----NNLRSIA------AFSEVSCHIVKLV 242 (950)
Q Consensus 180 Lt~--LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~-~L~~L~~LdLS--~----N~L~~L~------~l~~~L~~L~~L~ 242 (950)
++. +......+++|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++..+ .....+++|+.|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 441 211223467788887777777652 2332 46788888888 4 5565332 2234567888888
Q ss_pred ecCCCCCCc--ccCCC-CCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCC
Q 002227 243 LRNNALTTL--RGIEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (950)
Q Consensus 243 Ls~N~Ls~L--p~L~~-L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ldg 319 (950)
|++ .++.. +.+.. +++|+.|+|++|.+++.........+++|+.|+|++|+++... .......++.|+.|+|.+
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA--LLANASKLETMRSLWMSS 515 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH--HHHTGGGGGGSSEEEEES
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH--HHHHHHhCCCCCEEeeeC
Confidence 876 55542 33443 7889999999999876433222366899999999999984221 112344578899999999
Q ss_pred CcCChhH
Q 002227 320 KEISTRE 326 (950)
Q Consensus 320 N~Is~~e 326 (950)
|+++...
T Consensus 516 ~~~~~~~ 522 (594)
T 2p1m_B 516 CSVSFGA 522 (594)
T ss_dssp SCCBHHH
T ss_pred CCCCHHH
Confidence 9996543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.4e-12 Score=130.39 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=114.4
Q ss_pred cEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCC
Q 002227 194 ETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIIS 271 (950)
Q Consensus 194 ~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls 271 (950)
+.+++++|.|+.+|.- -.++|+.|+|++|.|+.++..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6899999999998732 236899999999999999877778899999999999999985 6899999999999999999
Q ss_pred CCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 272 ~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|+.+.|++|++.+.....
T Consensus 92 ~i~~-~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 92 CIPP-RTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp BCCT-TTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeCH-HHhCCCCCCCEEECCCCCCCeeC---hhhhhcCccccEEEeCCCCeecCCcCH
Confidence 9875 67899999999999999998654 345778899999999999998766433
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.1e-12 Score=159.98 Aligned_cols=133 Identities=20% Similarity=0.161 Sum_probs=102.9
Q ss_pred CCCCCccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc-CcCCCCCCcEEECCCCCccccccccccccceeEEEe
Q 002227 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (950)
Q Consensus 165 ~~L~~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~L 243 (950)
..++.|+.|+|++|.|..+|..+..+++|+.|+|++|.|+.+| .|..+++|+.|+|++|.|+.+|..+..+++|+.|+|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 3566888888888888888887778888888888888888776 578888888888888888888777777788888888
Q ss_pred cCCCCCCcc-cCCCCCCCCEEEccCCCCCCCchhhhcCCCC-CCcEEEecCCCCCCC
Q 002227 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCS 298 (950)
Q Consensus 244 s~N~Ls~Lp-~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~-~L~~L~LsgNpLt~~ 298 (950)
++|.|+.+| .|..+++|+.|+|++|.|++.++ ..+..+. .+..|+|.+|.++..
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccCc
Confidence 888888876 68888888888888888887543 3332221 222467888888644
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=9.3e-12 Score=126.58 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=112.5
Q ss_pred cEEEccCCCCCCCcC-cCCCCCCcEEECCCCCccccccc--cccccceeEEEecCCCCCCc-c-cCCCCCCCCEEEccCC
Q 002227 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAAF--SEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYN 268 (950)
Q Consensus 194 ~~LdLS~N~Lt~l~~-L~~L~~L~~LdLS~N~L~~L~~l--~~~L~~L~~L~Ls~N~Ls~L-p-~L~~L~sL~~LdLs~N 268 (950)
+.|++++|.++.+|. +. .+|+.|+|++|.|+.++.. +..+++|++|+|++|.|+.+ + .+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999874 32 4899999999999998763 66789999999999999997 3 7899999999999999
Q ss_pred CCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHHHH
Q 002227 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (950)
Q Consensus 269 ~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~~~ 329 (950)
+|+.+++ ..+..+++|+.|+|++|.|+... ...+..++.|+.++|++|++.+.....
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 9999875 66889999999999999998653 345777899999999999999876443
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=6.9e-15 Score=149.98 Aligned_cols=82 Identities=26% Similarity=0.339 Sum_probs=40.7
Q ss_pred CCcEEECCCCCccccccccccccceeEEEecCCCCCCcc---cCCCCCCCCEEEccCCCCCCCch---------hhhcCC
Q 002227 214 NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR---GIENLKSLEGLDISYNIISTFSE---------LEFLAS 281 (950)
Q Consensus 214 ~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~N~Ls~Lp---~L~~L~sL~~LdLs~N~Ls~l~~---------l~~L~~ 281 (950)
+|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++ .+..+++|+.|++++|.+....+ ...+..
T Consensus 94 ~L~~L~L~~N~l~~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 94 TLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HCSEEEEEEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcCCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 34444444444443331 223344555555555555432 34556666666666666544321 023556
Q ss_pred CCCCcEEEecCCCCCCC
Q 002227 282 LPYLLNLWLEGNPLCCS 298 (950)
Q Consensus 282 L~~L~~L~LsgNpLt~~ 298 (950)
+++|+.|+ +|+++..
T Consensus 173 l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 173 LPNLKKLD--GMPVDVD 187 (198)
T ss_dssp CSSCSEEC--CGGGTTT
T ss_pred CCCcEEEC--CcccCHH
Confidence 77777665 6766644
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=3.3e-13 Score=158.14 Aligned_cols=233 Identities=12% Similarity=0.099 Sum_probs=155.5
Q ss_pred hhHHHHhcCCCCCcEEEccCCCCCCCC-CccCCCCCCCcEEEeeCCCCCccchhhH-Hhhhhhhhhhhcc---------C
Q 002227 77 EQLRRILKLLTSLKVVSALPPPARDPT-PLSLLPFCRLKVLELRGCDLSTSAAKGL-LELRHTLEKIICH---------N 145 (950)
Q Consensus 77 ~~Lp~~L~~L~~L~~LdLs~N~L~~~i-P~sL~~L~nL~~LdLS~N~Ls~~lP~sL-~~L~~Ll~LlL~~---------N 145 (950)
..++..+..+++|+.|+|++|.+++.. +..+..+++|++|+|++| ++......+ ..+++|..+.+.. +
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 345555567899999999999876432 223568899999999998 543222233 3467777777633 2
Q ss_pred CCccchhhhccccccccCCCCCCCccEEEccCCcCccc-hhhc-CCCCCCcEEEcc--C----CCCCCCc-------CcC
Q 002227 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESL-QLLPAVETLDLS--R----NKFAKVD-------NLR 210 (950)
Q Consensus 146 ~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~L-P~sL-~~L~~L~~LdLS--~----N~Lt~l~-------~L~ 210 (950)
.+... . +..+. ..+++|+.|.+..|.++.. +..+ ..+++|+.|+|+ + |.++..+ .+.
T Consensus 358 ~l~~~---~---l~~l~--~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~ 429 (594)
T 2p1m_B 358 ALTEQ---G---LVSVS--MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429 (594)
T ss_dssp CCCHH---H---HHHHH--HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH
T ss_pred CCCHH---H---HHHHH--HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh
Confidence 22211 0 00010 1357899999999999832 2333 358999999999 4 6676432 156
Q ss_pred CCCCCcEEECCCCCcccc--ccccccccceeEEEecCCCCCCc--ccC-CCCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 002227 211 KCVNLKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNALTTL--RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (950)
Q Consensus 211 ~L~~L~~LdLS~N~L~~L--~~l~~~L~~L~~L~Ls~N~Ls~L--p~L-~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L 285 (950)
.+++|+.|+|++ .++.. ......+++|+.|+|++|.++.. ..+ ..+++|+.|+|++|.++.......+..+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 778999999987 55542 22333468999999999998763 333 5689999999999999654332345568999
Q ss_pred cEEEecCCCCCCCcccchhHhhccCCCcccccCCCc
Q 002227 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (950)
Q Consensus 286 ~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~ 321 (950)
+.|+|++|+++... .......++.++...+..+.
T Consensus 509 ~~L~l~~~~~~~~~--~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 509 RSLWMSSCSVSFGA--CKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SEEEEESSCCBHHH--HHHHHHHCTTEEEEEECSSS
T ss_pred CEEeeeCCCCCHHH--HHHHHHhCCCCEEEEecCCC
Confidence 99999999994221 11222456777766666554
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3.1e-12 Score=140.43 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=54.3
Q ss_pred CCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-cccccccee-EEEecCCCCCCcc--cCCCCCCCCEE
Q 002227 190 LPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV-KLVLRNNALTTLR--GIENLKSLEGL 263 (950)
Q Consensus 190 L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~-~L~Ls~N~Ls~Lp--~L~~L~sL~~L 263 (950)
+++|+.|+|++|.++.++ .|.++++|+.|+|.+| +..++. .+..+.+|+ .|.|.+ .++.++ +|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455666666666665553 4555666666666655 555543 233445565 666655 455543 55556666666
Q ss_pred EccCCCCCCCchhhhcCCCCCCcEEE
Q 002227 264 DISYNIISTFSELEFLASLPYLLNLW 289 (950)
Q Consensus 264 dLs~N~Ls~l~~l~~L~~L~~L~~L~ 289 (950)
+++.|.|+.++. ..|..+++|+.|+
T Consensus 303 ~l~~n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred EeCCCccCccch-hhhcCCcchhhhc
Confidence 666666655554 4455556665554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=7.9e-11 Score=117.39 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=111.7
Q ss_pred CcEEEccCCCCCCCcCcCCCCCCcEEECCCCCccccccc-cccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCC
Q 002227 193 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNI 269 (950)
Q Consensus 193 L~~LdLS~N~Lt~l~~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~ 269 (950)
.+.+++++|.++.+|. ...++|+.|+|++|.++.++.. +..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 5789999999999872 2347999999999999998763 466799999999999999986 47899999999999999
Q ss_pred CCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCCcCChhHH
Q 002227 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (950)
Q Consensus 270 Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~Is~~e~ 327 (950)
|+.++. ..+..+++|+.|+|++|.++..+ ...+..++.|+.++|.+|++.+...
T Consensus 88 l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPN-GVFDKLTQLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCH-HHhhCCcccCEEECcCCcceEeC---HHHhcCCcccCEEEecCCCeeccCc
Confidence 999875 56789999999999999998665 3456778899999999999998654
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=6.4e-11 Score=118.35 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=71.9
Q ss_pred cEEEccCCCCCCCcC-cCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCC
Q 002227 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNI 269 (950)
Q Consensus 194 ~~LdLS~N~Lt~l~~-L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~ 269 (950)
+.|++++|.|+.+|. + .++|+.|+|++|.|+.+++ .+..+++|++|+|++|+|+.++ .+..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555442 2 2455666666666665532 3444566666666667666664 36788899999999999
Q ss_pred CCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 270 Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
|+.+++ ..+..+++|+.|+|++|+|.|.+.
T Consensus 90 l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 998875 568889999999999999998873
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=9e-11 Score=117.94 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=71.4
Q ss_pred cEEEccCCCCCCCcC-cCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCC
Q 002227 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNI 269 (950)
Q Consensus 194 ~~LdLS~N~Lt~l~~-L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~ 269 (950)
+.+++++|+++.+|. +. ++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555555554442 21 455566666666655532 3445566667777777776665 35778889999999999
Q ss_pred CCCCchhhhcCCCCCCcEEEecCCCCCCCcc
Q 002227 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (950)
Q Consensus 270 Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~ 300 (950)
|+.++. ..+..+++|+.|+|++|+|.|.+.
T Consensus 93 l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 998875 558889999999999999998863
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=2.5e-11 Score=133.22 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=132.8
Q ss_pred CCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCC----Cccchhhhccccccc
Q 002227 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS----TNALRHVFASRIVEI 161 (950)
Q Consensus 86 L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~----L~sL~~l~~~~i~~L 161 (950)
+++|+.|+|.. .++.+.+.+|.++++|+.|+|++|.+..+.+..|..+..+..+....+. ...+....+..+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 99999999987 8887778889999999999999999887777777665554443332210 000100000000000
Q ss_pred c--------------------------------C--------C-CCCCCccEEEccCCcCccchh-hcCCCCCCcEEEcc
Q 002227 162 K--------------------------------D--------S-PQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLS 199 (950)
Q Consensus 162 ~--------------------------------~--------L-~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS 199 (950)
. . + ..+++|+.|+|++|+++.+|. .|..+++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0 0 0 026799999999999999987 68999999999999
Q ss_pred CCCCCCCc--CcCCCCCCc-EEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEc
Q 002227 200 RNKFAKVD--NLRKCVNLK-HLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDI 265 (950)
Q Consensus 200 ~N~Lt~l~--~L~~L~~L~-~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdL 265 (950)
+| +..++ .|.++++|+ .|+|.. .++.++. .+..+++|+.|+|.+|.++.++ .|.++++|+.|+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 87775 799999999 999998 7888864 5667899999999999999985 8999999999874
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=3.4e-10 Score=113.71 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=93.0
Q ss_pred ccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEecCC
Q 002227 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNN 246 (950)
Q Consensus 170 L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~N 246 (950)
-+.+++++|+|+.+|..+. ++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.++.. +..+++|+.|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998764 89999999999999974 689999999999999999999874 457899999999999
Q ss_pred CCCCcc--cCCCCCCCCEEEccCCCCCCCch
Q 002227 247 ALTTLR--GIENLKSLEGLDISYNIISTFSE 275 (950)
Q Consensus 247 ~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~ 275 (950)
+|+.++ .+..+++|+.|+|++|.+...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999986 48899999999999999987653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=2.7e-10 Score=113.78 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=92.8
Q ss_pred CccEEEccCCcCccchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCccccccc-cccccceeEEEecC
Q 002227 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~l-~~~L~~L~~L~Ls~ 245 (950)
..+.|++++|.|+.+|..+ .++|+.|+|++|.|+.++ .|..+++|++|+|++|+|+.+++. +..+++|+.|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4578999999999999866 389999999999999984 589999999999999999999874 45789999999999
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCc
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFS 274 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~ 274 (950)
|+|+.++ .+..+++|+.|+|++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999986 5889999999999999998754
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=3e-10 Score=124.93 Aligned_cols=98 Identities=22% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCCCCcCcCCCCCCcEEECCC-CCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhh
Q 002227 202 KFAKVDNLRKCVNLKHLDLGF-NNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELE 277 (950)
Q Consensus 202 ~Lt~l~~L~~L~~L~~LdLS~-N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~ 277 (950)
.|+.+|.|..+++|+.|+|++ |.|+.+++ .+..+++|+.|+|++|+|++++ .|..+++|+.|+|++|+|+.++. .
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~ 98 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-K 98 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-T
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH-H
Confidence 344333333344444444443 44444432 2333445555555555555542 45667778888888888887764 4
Q ss_pred hcCCCCCCcEEEecCCCCCCCccc
Q 002227 278 FLASLPYLLNLWLEGNPLCCSRWY 301 (950)
Q Consensus 278 ~L~~L~~L~~L~LsgNpLt~~~~~ 301 (950)
.+..++ |+.|+|.+|+|.|.+.+
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCCCGGG
T ss_pred HcccCC-ceEEEeeCCCccCCCcc
Confidence 455554 99999999999988753
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=6.2e-11 Score=133.54 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=111.7
Q ss_pred CCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCCCCccEEEccCCcCcc--chhhcC
Q 002227 111 CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI--MDESLQ 188 (950)
Q Consensus 111 ~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~--LP~sL~ 188 (950)
++|+.|+|++|.|+......+..+- . ...++|+.|+|++|.|+. +.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L-------~---------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~ 123 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVL-------G---------------------SGRHALDEVNLASCQLDPAGLRTLLP 123 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHH-------S---------------------SCSSCEEEEECTTCCCCHHHHHHTHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHH-------h---------------------hCCCCceEEEecCCCCCHHHHHHHHH
Confidence 5677788888887654433333221 0 122478888888888762 222223
Q ss_pred CCCCCcEEEccCCCCCCC--cC----c-CCCCCCcEEECCCCCcccc-----ccccccccceeEEEecCCCCCCc-----
Q 002227 189 LLPAVETLDLSRNKFAKV--DN----L-RKCVNLKHLDLGFNNLRSI-----AAFSEVSCHIVKLVLRNNALTTL----- 251 (950)
Q Consensus 189 ~L~~L~~LdLS~N~Lt~l--~~----L-~~L~~L~~LdLS~N~L~~L-----~~l~~~L~~L~~L~Ls~N~Ls~L----- 251 (950)
.+++|+.|+|++|.|+.. .. + ...++|+.|+|++|.|+.. ......+++|++|+|++|.|+..
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 345788888888888653 12 2 3457788888888887652 22223457788888888888752
Q ss_pred -ccCCCCCCCCEEEccCCCCCCCchh---hhcCCCCCCcEEEecCCCCCCCcccchhHhhccCC-----Ccccc--cCCC
Q 002227 252 -RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH-----PAKLK--VDGK 320 (950)
Q Consensus 252 -p~L~~L~sL~~LdLs~N~Ls~l~~l---~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~-----L~~L~--LdgN 320 (950)
..+..+++|+.|+|++|.|+..... ..+..+++|+.|+|++|+|+... ...+..+.. ++.+. ++++
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g---~~~L~~~~~~~~~~L~~l~~ll~~~ 280 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG---RQVLRDLGGAAEGGARVVVSLTEGT 280 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH---HHHHHHCC------CEEECCCC---
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH---HHHHHHHhcCCCccchhhHhhhcCC
Confidence 2566677899999999988764321 23456688999999999987442 122222211 55555 6666
Q ss_pred cCCh
Q 002227 321 EIST 324 (950)
Q Consensus 321 ~Is~ 324 (950)
.++.
T Consensus 281 ~~~~ 284 (372)
T 3un9_A 281 AVSE 284 (372)
T ss_dssp -CHH
T ss_pred ccCH
Confidence 6654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=3.3e-10 Score=124.59 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=101.6
Q ss_pred cEEEccCC-cCccchhhcCCCCCCcEEEccC-CCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecC
Q 002227 171 SFVSCSCN-RLVIMDESLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (950)
Q Consensus 171 ~~L~Ls~N-~Lt~LP~sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~ 245 (950)
..++++++ +|+.+|. +..+++|+.|+|++ |.|+.++ .|..+++|+.|+|++|+|+++++ .+..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 9999999 99999999999996 9999875 59999999999999999999876 456789999999999
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCc
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~ 299 (950)
|+|+.++ .+..++ |+.|+|.+|.|.....+.++..+.......+..+.++|..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 9999986 444454 9999999999997665555544433333344556666653
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=1.3e-10 Score=130.83 Aligned_cols=178 Identities=21% Similarity=0.203 Sum_probs=116.8
Q ss_pred CCCCcEEEccCCCCCCCCCccCCC-----CCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhcccccc
Q 002227 86 LTSLKVVSALPPPARDPTPLSLLP-----FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (950)
Q Consensus 86 L~~L~~LdLs~N~L~~~iP~sL~~-----L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~ 160 (950)
+++|+.|+|++|.++......|.. .++|+.|+|++|.|+......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------------- 123 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP--------------------------- 123 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---------------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---------------------------
Confidence 567899999999987543333332 379999999999987533322221
Q ss_pred ccCCCCCCCccEEEccCCcCccc-----hhhc-CCCCCCcEEEccCCCCCCC------cCcCCCCCCcEEECCCCCcccc
Q 002227 161 IKDSPQWNRLSFVSCSCNRLVIM-----DESL-QLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSI 228 (950)
Q Consensus 161 L~~L~~L~~L~~L~Ls~N~Lt~L-----P~sL-~~L~~L~~LdLS~N~Lt~l------~~L~~L~~L~~LdLS~N~L~~L 228 (950)
.+++|+.|+|++|.|+.. ...+ ...++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+..
T Consensus 124 -----~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~ 198 (372)
T 3un9_A 124 -----VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198 (372)
T ss_dssp -----HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH
T ss_pred -----HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH
Confidence 112577888888888732 2223 3467888888888888752 2446678889999999988753
Q ss_pred -----ccccccccceeEEEecCCCCCCc------ccCCCCCCCCEEEccCCCCCCCchhhhcCCC---CC--CcEEE--e
Q 002227 229 -----AAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLASL---PY--LLNLW--L 290 (950)
Q Consensus 229 -----~~l~~~L~~L~~L~Ls~N~Ls~L------p~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L---~~--L~~L~--L 290 (950)
......+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|+.... ..+..+ .. |+.+. +
T Consensus 199 g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L~~~~~~~~~~L~~l~~ll 277 (372)
T 3un9_A 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR-QVLRDLGGAAEGGARVVVSLT 277 (372)
T ss_dssp HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHHHHCC------CEEECCCC
T ss_pred HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHHHHHhcCCCccchhhHhhh
Confidence 22334456899999999988763 245567889999999999987432 333332 21 66666 6
Q ss_pred cCCCCC
Q 002227 291 EGNPLC 296 (950)
Q Consensus 291 sgNpLt 296 (950)
.+|.+.
T Consensus 278 ~~~~~~ 283 (372)
T 3un9_A 278 EGTAVS 283 (372)
T ss_dssp ----CH
T ss_pred cCCccC
Confidence 666664
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=5.4e-09 Score=118.94 Aligned_cols=190 Identities=11% Similarity=0.114 Sum_probs=81.7
Q ss_pred CCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccccCCCCC
Q 002227 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (950)
Q Consensus 88 ~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L~~L~~L 167 (950)
+|+.+.|.. .+....+.+|.++++|+.|+|.+|.++.+....|. ...|..+.+.. .+..+... .+..+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~---------aF~~~ 225 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQ---------AFLKT 225 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTT---------TTTTC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhh---------HhhCC
Confidence 355555532 34434444555555555555555555443333332 23333333221 12222211 12234
Q ss_pred CCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcc-----cccc-ccccccce
Q 002227 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR-----SIAA-FSEVSCHI 238 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~-----~L~~-l~~~L~~L 238 (950)
++|+.+.+..| ++.++. +|.. .+|+.+.| .+.++.++ .|.++++|+.+.+.+|.+. .++. .+..+++|
T Consensus 226 ~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 226 SQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp TTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred CCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 45555555442 344433 2322 44555555 23344332 4555555555555554443 2222 23344455
Q ss_pred eEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCC
Q 002227 239 VKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 239 ~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt 296 (950)
+.+.|. +.++.++ .|.+|++|+.|.|..| ++.+.. ..|..+ +|+.|.+.+|.+.
T Consensus 303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCC
T ss_pred CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCc
Confidence 555555 2344442 4555555555555333 444432 344445 5555555555443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.7e-08 Score=114.76 Aligned_cols=217 Identities=11% Similarity=0.134 Sum_probs=122.8
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccccccc
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~i~~L 161 (950)
.|.++ +|+.+.|..+ ++.+...+|.+ .+|+.+.|.+ .+..+.+..|..+.+|..+.+..|.+..++...+.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~----- 201 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV----- 201 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----
Confidence 34443 5666666433 55444555555 3566666664 45555555666666666666665555555443221
Q ss_pred cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccc
Q 002227 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCH 237 (950)
Q Consensus 162 ~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~ 237 (950)
..+|+.+.|..+ ++.++. .|..+++|+.+.|..| ++.++ .|.+ .+|+.+.| .+.++.++. .+..+++
T Consensus 202 -----~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 202 -----YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp -----TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred -----ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 245666666533 555543 4556666666666653 44432 4444 55666666 344555543 3445667
Q ss_pred eeEEEecCCCCC-----Ccc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccC
Q 002227 238 IVKLVLRNNALT-----TLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (950)
Q Consensus 238 L~~L~Ls~N~Ls-----~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~ 310 (950)
|+.+.+.+|.+. .++ .|..|++|+.++|. +.++.++. ..|..+++|+.|.|..| ++. +....|..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~~---I~~~aF~~~- 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VTQ---INFSAFNNT- 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CCE---ECTTSSSSS-
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-ccE---EcHHhCCCC-
Confidence 777777776654 232 66777777777776 34666654 55667777777777544 432 223445666
Q ss_pred CCcccccCCCcCC
Q 002227 311 HPAKLKVDGKEIS 323 (950)
Q Consensus 311 ~L~~L~LdgN~Is 323 (950)
.|+.+.+.+|.+.
T Consensus 346 ~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 346 GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCEEEECCSSCC
T ss_pred CCCEEEEcCCCCc
Confidence 6777777777554
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=1.6e-07 Score=101.41 Aligned_cols=112 Identities=29% Similarity=0.425 Sum_probs=79.4
Q ss_pred CCCCCCcE--EECCCCCccccccc----cccccceeEEEecCCCCCCcccCC----CCCCCCEEEccCCCCCCCchhhhc
Q 002227 210 RKCVNLKH--LDLGFNNLRSIAAF----SEVSCHIVKLVLRNNALTTLRGIE----NLKSLEGLDISYNIISTFSELEFL 279 (950)
Q Consensus 210 ~~L~~L~~--LdLS~N~L~~L~~l----~~~L~~L~~L~Ls~N~Ls~Lp~L~----~L~sL~~LdLs~N~Ls~l~~l~~L 279 (950)
...+.|.. ++++.|+...++.. ...+++|+.|+|++|+|+.++.+. .+++|+.|+|++|.|+++..+..+
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l 217 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI 217 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc
Confidence 33344444 56666655443321 234678888888888888875443 789999999999999998766666
Q ss_pred CCCCCCcEEEecCCCCCCC----cccchhHhhccCCCcccccCCCcCCh
Q 002227 280 ASLPYLLNLWLEGNPLCCS----RWYRAQVFSYFAHPAKLKVDGKEIST 324 (950)
Q Consensus 280 ~~L~~L~~L~LsgNpLt~~----~~~r~~~~~~L~~L~~L~LdgN~Is~ 324 (950)
..+ +|+.|+|.+||++.. +.|+..++..++.|+ .|||.+|+.
T Consensus 218 ~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~--~LDg~~v~p 263 (267)
T 3rw6_A 218 KGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLL--RLDGHELPP 263 (267)
T ss_dssp TTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCC--EESSCBCCC
T ss_pred ccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccC--eECCcCCCC
Confidence 666 999999999999752 356667778886554 667777753
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=5.4e-07 Score=101.29 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=26.8
Q ss_pred ccceeEEEecCCCCCCc-----ccCCCCCCCCEEEccCCCCCCCchh---hhcCCCCCCcEEEecCCCCC
Q 002227 235 SCHIVKLVLRNNALTTL-----RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLC 296 (950)
Q Consensus 235 L~~L~~L~Ls~N~Ls~L-----p~L~~L~sL~~LdLs~N~Ls~l~~l---~~L~~L~~L~~L~LsgNpLt 296 (950)
+++|+.|+|.+|.+... .....+++|++|+|+.|.|.+.... ..+..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34555555555544320 0112344555555555555442110 11223455555555555544
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.1e-06 Score=98.67 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=91.1
Q ss_pred hHHHHhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhccc
Q 002227 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (950)
Q Consensus 78 ~Lp~~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~~~ 157 (950)
.+...+..+++|+.|.|.+|.-. .++. +. +++|++|+|..|.++......+..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~------------------------ 215 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILG------------------------ 215 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH------------------------
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHH------------------------
Confidence 46677888999999999887311 2233 33 789999999998886533333321
Q ss_pred cccccCCCCCCCccEEEccC--Cc------Cccchhhc--CCCCCCcEEEccCCCCCCC-----cCcCCCCCCcEEECCC
Q 002227 158 IVEIKDSPQWNRLSFVSCSC--NR------LVIMDESL--QLLPAVETLDLSRNKFAKV-----DNLRKCVNLKHLDLGF 222 (950)
Q Consensus 158 i~~L~~L~~L~~L~~L~Ls~--N~------Lt~LP~sL--~~L~~L~~LdLS~N~Lt~l-----~~L~~L~~L~~LdLS~ 222 (950)
..+++|+.|+|+. |. +..+...+ ..+|+|+.|+|++|.+... .....+++|++|+|+.
T Consensus 216 -------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 216 -------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp -------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred -------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 1234556665532 11 22222222 2467777777777776531 1113467788888888
Q ss_pred CCcccc-----ccccccccceeEEEecCCCCCCc--ccCCC-CCCCCEEEccCCC
Q 002227 223 NNLRSI-----AAFSEVSCHIVKLVLRNNALTTL--RGIEN-LKSLEGLDISYNI 269 (950)
Q Consensus 223 N~L~~L-----~~l~~~L~~L~~L~Ls~N~Ls~L--p~L~~-L~sL~~LdLs~N~ 269 (950)
|.|... ......+++|+.|+|++|.|+.. ..+.. + ...++++.|+
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 877652 22223457788888888877652 12221 1 3456776665
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=5.6e-07 Score=91.13 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=89.0
Q ss_pred chhHHHHhcCCCCCcEEEccCC-CCCCC----CCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccc
Q 002227 76 LEQLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNAL 150 (950)
Q Consensus 76 l~~Lp~~L~~L~~L~~LdLs~N-~L~~~----iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL 150 (950)
.+.+...+...++|+.|+|++| .|... +...+...++|++|+|++|.|.......+...-
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L--------------- 89 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--------------- 89 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH---------------
Confidence 4456778889999999999998 87642 344566778999999999999753333332211
Q ss_pred hhhhccccccccCCCCCCCccEEEccCCcCcc-----chhhcCCCCCCcEEEc--cCCCCCCC------cCcCCCCCCcE
Q 002227 151 RHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDL--SRNKFAKV------DNLRKCVNLKH 217 (950)
Q Consensus 151 ~~l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt~-----LP~sL~~L~~L~~LdL--S~N~Lt~l------~~L~~L~~L~~ 217 (950)
...+.|++|+|++|.|.. +...+...+.|++|+| ++|.|..- ..+...+.|+.
T Consensus 90 --------------~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~ 155 (185)
T 1io0_A 90 --------------KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155 (185)
T ss_dssp --------------HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred --------------HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCE
Confidence 012478899999999883 5567777888999999 77888752 24555678888
Q ss_pred EECCCCCccc
Q 002227 218 LDLGFNNLRS 227 (950)
Q Consensus 218 LdLS~N~L~~ 227 (950)
|+|++|.|..
T Consensus 156 L~L~~n~i~~ 165 (185)
T 1io0_A 156 FGYHFTQQGP 165 (185)
T ss_dssp EECCCSSHHH
T ss_pred EeccCCCCCh
Confidence 8888888753
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=2.1e-06 Score=86.86 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCccEEEccCCcCc-----cchhhcCCCCCCcEEEccCCCCCCC------cCcCCCCCCcEEEC--CCCCcc
Q 002227 168 NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDL--GFNNLR 226 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~l------~~L~~L~~L~~LdL--S~N~L~ 226 (950)
+.|++|+|++|.|. .+...+...+.|++|+|++|.|..- ..+...+.|+.|+| ++|.|.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 35666666666665 2333444445566666666655541 23444445555555 445544
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.06 E-value=2.5e-05 Score=87.61 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCccEEEccCCcCccch-hhcCCCCCCcEEEccCCCCCC-CcCcCCCCCCcEEECCCCCccccccccccccceeEEEecC
Q 002227 168 NRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAK-VDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (950)
Q Consensus 168 ~~L~~L~Ls~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~-l~~L~~L~~L~~LdLS~N~L~~L~~l~~~L~~L~~L~Ls~ 245 (950)
..|+.+.+..+ ++.++ ..+..+..|+.+.+..+...- ...|..+..|+.+.+..+.+.. ..+..+.+|+.+.+..
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc
Confidence 34555555432 23332 245556666666665543321 1244555555555554433211 1223345666666654
Q ss_pred CCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccC
Q 002227 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (950)
Q Consensus 246 N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~Ld 318 (950)
+ ++.++ +|..+.+|+.++|..+ ++.++. ..|..+.+|+.+.|..| +... ...+|..+..|+.+.|.
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I---~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKI---GANAFQGCINLKKVELP 374 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEE---CTTTBTTCTTCCEEEEE
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEe---hHHHhhCCCCCCEEEEC
Confidence 3 44443 5566666666666433 555443 44566666666666554 3322 23345555556655553
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.00013 Score=81.86 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=68.3
Q ss_pred cCCCCCCcEEECCCCCccccc-cccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 002227 209 LRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (950)
Q Consensus 209 L~~L~~L~~LdLS~N~L~~L~-~l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L 285 (950)
|..+..|+.+.+..+.. .+. ..+..++.|+.+.+. +.++.++ .|..|.+|+.++|..+ ++.+.. ..|..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence 45556666666654332 222 233345677777774 4566664 6788888888888754 666654 567888888
Q ss_pred cEEEecCCCCCCCcccchhHhhccCCCcccccCCCc
Q 002227 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (950)
Q Consensus 286 ~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~ 321 (950)
+.+.|..+ ++.. ....|..+..|+.+.+.++.
T Consensus 337 ~~i~ip~s-v~~I---~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKI---PESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBC---CGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEE---hHhHhhCCCCCCEEEECCce
Confidence 88888654 4433 34567788888888888764
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00016 Score=81.10 Aligned_cols=228 Identities=10% Similarity=0.104 Sum_probs=123.4
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhhc------
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA------ 155 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~l~~------ 155 (950)
.|.++.+|+.+.|. +.++.+...+|.++++|+.++|..+ ++.+....|..+..|..+.+..+ +..+....+
T Consensus 66 AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 57788888888884 4466666778888888888888755 55555556666655554443322 222222111
Q ss_pred -----cccccc--cCCCCCCCccEEEccCCcCccchh-hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCC-
Q 002227 156 -----SRIVEI--KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN- 224 (950)
Q Consensus 156 -----~~i~~L--~~L~~L~~L~~L~Ls~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~- 224 (950)
..+..+ ..+..+++|+.+.+..+ +..++. .|..+.+|+.+.+..| ++.+. .|..+..|+.+.+..+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 111111 23456788888888755 344443 6777788888887665 33332 34444444444443221
Q ss_pred --------------------cccccc-ccccccceeEEEecCCCCCC--------------------cc--cCCCCCCCC
Q 002227 225 --------------------LRSIAA-FSEVSCHIVKLVLRNNALTT--------------------LR--GIENLKSLE 261 (950)
Q Consensus 225 --------------------L~~L~~-l~~~L~~L~~L~Ls~N~Ls~--------------------Lp--~L~~L~sL~ 261 (950)
+..+.. .+..+..|+.+.+..+...- ++ .+..+.+|+
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccc
Confidence 111211 22334567777766553211 11 344555666
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCcccchhHhhccCCCcccccCCC
Q 002227 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (950)
Q Consensus 262 ~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN 320 (950)
.+.+..+ ++.++. ..+..+.+|+.+.|..+ ++. .....|..+..|+.+.|..+
T Consensus 301 ~i~l~~~-i~~I~~-~aF~~c~~L~~i~lp~~-v~~---I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 301 EVKLLDS-VKFIGE-EAFESCTSLVSIDLPYL-VEE---IGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEEECTT-CCEECT-TTTTTCTTCCEECCCTT-CCE---ECTTTTTTCTTCCEECCCTT
T ss_pred ccccccc-cceech-hhhcCCCCCCEEEeCCc-ccE---EhHHhccCCCCCCEEEECcc
Confidence 6666443 444443 44566666777666533 332 22344556666666666544
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=0.00038 Score=78.01 Aligned_cols=225 Identities=10% Similarity=0.126 Sum_probs=127.8
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccC----------------
Q 002227 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN---------------- 145 (950)
Q Consensus 82 ~L~~L~~L~~LdLs~N~L~~~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N---------------- 145 (950)
.|..+.+|+.+.+.. .+.......|.....|+.+.+..+ ++.+....|.. ..|..+.+..+
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALS 208 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCC
T ss_pred hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccc
Confidence 567788888888843 344455567777788888887654 33322223322 12222222111
Q ss_pred -------CCccchhhhccccc----cccCCCCCCCccEEEccCCcCccch-hhcCCCCCCcEEEccCCCCCCC--cCcCC
Q 002227 146 -------STNALRHVFASRIV----EIKDSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKV--DNLRK 211 (950)
Q Consensus 146 -------~L~sL~~l~~~~i~----~L~~L~~L~~L~~L~Ls~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~l--~~L~~ 211 (950)
....+...++.... .+........+..+.+. +.++.+. .+|..+..|+.+.+..+.. .+ ..|.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCccccc
Confidence 11111111000000 00001112233333332 2233332 3677888899999876543 33 36888
Q ss_pred CCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEE
Q 002227 212 CVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (950)
Q Consensus 212 L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L 288 (950)
++.|+.+.+. +.+..++. .+..+.+|+.+.|..+ ++.+. +|.+|.+|+.+.|..+ ++.+.. ..|.++++|+.+
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE-SAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG-GGGTTCTTCCEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH-hHhhCCCCCCEE
Confidence 9999999996 56777765 4456789999999764 77764 7899999999999654 777765 678999999999
Q ss_pred EecCCCCCCCcccchhHhhccCCCcccccCCCc
Q 002227 289 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (950)
Q Consensus 289 ~LsgNpLt~~~~~r~~~~~~L~~L~~L~LdgN~ 321 (950)
.+.+|... ...+.....|+.+.+..+.
T Consensus 363 ~~~~~~~~------~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 363 EYSGSRSQ------WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EESSCHHH------HHTCBCCCCC---------
T ss_pred EECCceee------hhhhhccCCCCEEEeCCCC
Confidence 99987542 1223445556666655543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=2.3e-05 Score=84.56 Aligned_cols=91 Identities=30% Similarity=0.382 Sum_probs=55.6
Q ss_pred EEccCCcCccchhh----cCCCCCCcEEEccCCCCCCCcCcC----CCCCCcEEECCCCCcccccccccccc--ceeEEE
Q 002227 173 VSCSCNRLVIMDES----LQLLPAVETLDLSRNKFAKVDNLR----KCVNLKHLDLGFNNLRSIAAFSEVSC--HIVKLV 242 (950)
Q Consensus 173 L~Ls~N~Lt~LP~s----L~~L~~L~~LdLS~N~Lt~l~~L~----~L~~L~~LdLS~N~L~~L~~l~~~L~--~L~~L~ 242 (950)
++++.|....++.. ...+++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|.++..+. .+. .|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-GGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-hcccCCcceEE
Confidence 55566655544332 235677777777777777765333 5677777777777777664321 122 677777
Q ss_pred ecCCCCCC-cc--------cCCCCCCCCEEE
Q 002227 243 LRNNALTT-LR--------GIENLKSLEGLD 264 (950)
Q Consensus 243 Ls~N~Ls~-Lp--------~L~~L~sL~~Ld 264 (950)
|++|.+.. ++ .+..+|+|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77777764 21 245677777775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.34 E-value=0.0016 Score=72.13 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=43.5
Q ss_pred hcCCCCCCcEEEccCCCCCCC--cCcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCC
Q 002227 186 SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (950)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL 260 (950)
.+....+|+.+.+..+ +..+ ..+..+..|+.+.+..+ ++.+.. .+..+..|+.+.+..+ ++.++ .|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3334444555444332 2222 13444445555554433 333322 2223344444444322 33332 44445555
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCCcEEEec
Q 002227 261 EGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (950)
Q Consensus 261 ~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~Ls 291 (950)
+.+.+.++.++.++. ..|..+.+|+.+.|.
T Consensus 289 ~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNSAIETLEP-RVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECCTTCCEECT-TTTTTCTTCCEEECC
T ss_pred ccccccccccceehh-hhhcCCCCCCEEEcC
Confidence 555555444444433 344455555555553
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.26 E-value=0.0047 Score=68.30 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred hcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcccccc-ccccccceeEEEecCCCCCCcc--cCCCCCCC
Q 002227 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (950)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~~L~~-l~~~L~~L~~L~Ls~N~Ls~Lp--~L~~L~sL 260 (950)
.+..+..|+.+.+..+ ++.+. .|..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++ .|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444555555555443 33332 4445555555555432 333332 2334455555555555555543 45555555
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCCcEEEec
Q 002227 261 EGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (950)
Q Consensus 261 ~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~Ls 291 (950)
+.+.|..+ ++.+.. ..|.++.+|+.+.+.
T Consensus 313 ~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA-LKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT-CCEECT-TTTTTCTTCCCCCCC
T ss_pred CEEEcCcc-ccEEHH-HHhhCCCCCCEEEEC
Confidence 55555432 444433 344555555555553
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00083 Score=69.32 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=81.2
Q ss_pred hHHHHhcCCCCCcEEEccCC-CCCC----CCCccCCCCCCCcEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchh
Q 002227 78 QLRRILKLLTSLKVVSALPP-PARD----PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRH 152 (950)
Q Consensus 78 ~Lp~~L~~L~~L~~LdLs~N-~L~~----~iP~sL~~L~nL~~LdLS~N~Ls~~lP~sL~~L~~Ll~LlL~~N~L~sL~~ 152 (950)
.+...+.+-+.|+.|+|++| .|.+ .+..++..-+.|+.|+|++|.|.......|...- ..|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-------~~N------- 97 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-------ETS------- 97 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-------HHC-------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-------hcC-------
Confidence 45667778889999999875 6654 2344566778899999999998764444443321 112
Q ss_pred hhccccccccCCCCCCCccEEEccCCcCc-----cchhhcCCCCCCcEEEccCCCC---CC-----C-cCcCCCCCCcEE
Q 002227 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKF---AK-----V-DNLRKCVNLKHL 218 (950)
Q Consensus 153 l~~~~i~~L~~L~~L~~L~~L~Ls~N~Lt-----~LP~sL~~L~~L~~LdLS~N~L---t~-----l-~~L~~L~~L~~L 218 (950)
+.|+.|+|+.|.|. .+-+.+..-..|+.|+|++|.. .. + ..+..-+.|+.|
T Consensus 98 ---------------~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 98 ---------------PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp ---------------SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 47888999999887 4445677777788888876533 32 1 234555778888
Q ss_pred ECCCCCcc
Q 002227 219 DLGFNNLR 226 (950)
Q Consensus 219 dLS~N~L~ 226 (950)
+|+.|.+.
T Consensus 163 ~l~~~~~g 170 (197)
T 1pgv_A 163 GISFASME 170 (197)
T ss_dssp ECCCCCHH
T ss_pred eccCCCcc
Confidence 88777654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.88 E-value=0.00034 Score=70.94 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCcEEEccCCCCCC--CcCcCCCCCCcEEECCCC
Q 002227 192 AVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFN 223 (950)
Q Consensus 192 ~L~~LdLS~N~Lt~--l~~L~~L~~L~~LdLS~N 223 (950)
.|+.|+|+++.|+. +..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 56666666666553 234555555555555555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.0024 Score=61.22 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=49.1
Q ss_pred eEEEecCCCCC--CcccCCCCCCCCEEEccCCCCCCCchhhhcCCCCCCcEEEecCCCCCCCccc
Q 002227 239 VKLVLRNNALT--TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (950)
Q Consensus 239 ~~L~Ls~N~Ls--~Lp~L~~L~sL~~LdLs~N~Ls~l~~l~~L~~L~~L~~L~LsgNpLt~~~~~ 301 (950)
..++.+++.|+ .+|.- -.++|+.|+|++|+|+.++. ..|..+++|+.|+|.+||+.|.+.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCcc
Confidence 36777888887 67621 12469999999999999986 6788899999999999999999854
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.56 E-value=0.003 Score=63.97 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCcEEECCCCCccc--cccccccccceeEEEecCCC-CCC--cccCCCC----CCCCEEEccCCC-CCCCchhhhcCCC
Q 002227 213 VNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNA-LTT--LRGIENL----KSLEGLDISYNI-ISTFSELEFLASL 282 (950)
Q Consensus 213 ~~L~~LdLS~N~L~~--L~~l~~~L~~L~~L~Ls~N~-Ls~--Lp~L~~L----~sL~~LdLs~N~-Ls~l~~l~~L~~L 282 (950)
..|+.|||+++.|+. +..+ ..+++|+.|+|++|. |+. +..+..+ ++|++|+|++|. |++- .+..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence 468888888888764 3333 456888888888884 655 3344443 468888888874 7663 45667788
Q ss_pred CCCcEEEecCCC
Q 002227 283 PYLLNLWLEGNP 294 (950)
Q Consensus 283 ~~L~~L~LsgNp 294 (950)
++|+.|+|++++
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888886
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.25 E-value=0.0036 Score=64.53 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=17.4
Q ss_pred CccEEEccCCcCc-----cchhhcCCCCCCcEEEccCCCCC
Q 002227 169 RLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFA 204 (950)
Q Consensus 169 ~L~~L~Ls~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt 204 (950)
.|+.|+|++|+|. .|...+..-+.|+.|+|+.|.|.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4555555555554 22333334444555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.61 E-value=0.014 Score=55.73 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=33.2
Q ss_pred EEEccCCcCc--cchhhcCCCCCCcEEEccCCCCCCCc--CcCCCCCCcEEECCCCCcc
Q 002227 172 FVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR 226 (950)
Q Consensus 172 ~L~Ls~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~~L~~LdLS~N~L~ 226 (950)
.+++++++|+ .+|..+ .++|+.|+|++|+|+.++ .|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6677777776 676432 235667777777776664 4556666666666666543
No 165
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=42.50 E-value=14 Score=35.22 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.8
Q ss_pred CCCCCCcc--------------hhhhhhhhhhhHHHHHhhccce
Q 002227 595 RPGSPPHY--------------REDILHRRHNLVAEILQLSAES 624 (950)
Q Consensus 595 ~p~spp~~--------------~~d~l~rr~~~~~e~lq~~~~~ 624 (950)
+|..||.| +|-+-..||.||||++++-.++
T Consensus 72 SPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~f 115 (124)
T 4fxw_B 72 SPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDF 115 (124)
T ss_dssp CCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSC
T ss_pred CCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 46678887 5667788999999999986653
Done!