BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002230
(950 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 296 bits (758), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 256/834 (30%), Positives = 393/834 (47%), Gaps = 101/834 (12%)
Query: 131 SITDGISTSEHLLNRRKEIYGINKFTESPARGFWVYVWEALHDMTLMILAVCALVSLVVG 190
S T G++ + + R E YG N+ + W V E D+ + IL + A +S V+
Sbjct: 19 SETTGLTPDQ--VKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLA 76
Query: 191 IATEGWPK-GAHDGLGIVMSILL---VVFVTATSDYKQSLQ-FKDLDREKKKITVQVARN 245
EG A +++ IL+ +V V + + +++ K+ + E K+ + R
Sbjct: 77 WFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKV-YRADRK 135
Query: 246 GFRRKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV 296
+R I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV
Sbjct: 136 SVQR-IKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 297 -NVNALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLN 351
+ A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLD 254
Query: 352 GVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXX 411
+ K+ V + + + G F + G+ W + +F
Sbjct: 255 EFGEQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAA 306
Query: 412 XPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKA 471
PEGLP +T LA ++M A+VR L + ET+G + ICSDKTGTLTTN M+V K
Sbjct: 307 IPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKM 366
Query: 472 CICEEIK---------EVDNSKGTP---AFGSSIPASASK----LLLQSI---------- 505
I + I V S P + P + + + L +I
Sbjct: 367 FIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLD 426
Query: 506 FNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV---- 561
FN T G E +G TETA+ + R SK+ + NSV
Sbjct: 427 FNETKG--------IYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQL 478
Query: 562 -KKQMGVVIELPEGGFRVHC---------------KGASEIILAACDKFLNSNGEVVPLN 605
KK+ + V+C KGA E ++ C+ ++ VP+
Sbjct: 479 MKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPMT 537
Query: 606 EAAVNHLNETIEKFAS--EALRTLCLACMEIG---NEFSADAPIPTEGY----TCIGIVG 656
+ I+++ + + LR L LA + E D Y T +G+VG
Sbjct: 538 GPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLTFVGVVG 597
Query: 657 IKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPEF 712
+ DP R V S+ +CR AGI V M+TGDN TA AI R GI +N A G EF
Sbjct: 598 MLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRAYTGREF 657
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
+ E + + AR P K +V++L++ E+ A+TGDG NDAPAL +A+IG
Sbjct: 658 DDLPLAEQREACRRACCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIG 716
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNF 832
+AMG +GT VAK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++ F
Sbjct: 717 IAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIF 775
Query: 833 SSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 886
+A L L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 776 LTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLIS 829
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 294 bits (753), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 255/835 (30%), Positives = 393/835 (47%), Gaps = 102/835 (12%)
Query: 131 SITDGISTSEHLLNRRKEIYGINKFTESPARGFWVYVWEALHDMTLMILAVCALVSLVVG 190
S T G++ + + R E YG N+ + W V E D+ + IL + A +S V+
Sbjct: 20 SETTGLTPDQ--VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 77
Query: 191 IATEGWPK-GAHDGLGIVMSILL---VVFVTATSDYKQSLQ-FKDLDREKKKITVQVARN 245
EG A +++ IL+ +V V + + +++ K+ + E K+ + R
Sbjct: 78 WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKV-YRADRK 136
Query: 246 GFRRKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV 296
+R I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV
Sbjct: 137 SVQR-IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 195
Query: 297 -NVNALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLN 351
+ A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 196 PDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLD 255
Query: 352 GVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXX 411
+ K+ V + + + G F + G+ W + +F
Sbjct: 256 EFGEQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAA 307
Query: 412 XPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKA 471
PEGLP +T LA ++M A+VR L + ET+G + ICSDKTGTLTTN M+V K
Sbjct: 308 IPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKM 367
Query: 472 CICEEIKEVDNSKGTPAFGSSIPASASKLL----------------LQSI---------- 505
I +++ S + S A ++L L +I
Sbjct: 368 FIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD 427
Query: 506 FNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV---- 561
FN T G E +G TETA+ + R SK+ + NSV
Sbjct: 428 FNETKG--------VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQL 479
Query: 562 -KKQMGVVIELPEGGFRVHC----------------KGASEIILAACDKFLNSNGEVVPL 604
KK+ + V+C KGA E ++ C+ ++ VP+
Sbjct: 480 MKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPM 538
Query: 605 NEAAVNHLNETIEKFAS--EALRTLCLACMEIG---NEFSADAPIPTEGY----TCIGIV 655
+ I+++ + + LR L LA + E D Y T +G+V
Sbjct: 539 TGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVV 598
Query: 656 GIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPE 711
G+ DP R V S+ +CR AGI V M+TGDN TA AI R GI +N A G E
Sbjct: 599 GMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGRE 658
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
F + E + + AR P K +V++L++ E+ A+TGDG NDAPAL +A+I
Sbjct: 659 FDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEI 717
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVN 831
G+AMG +GT VAK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++
Sbjct: 718 GIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCI 776
Query: 832 FSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 886
F +A L L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 777 FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 831
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 294 bits (753), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 255/835 (30%), Positives = 393/835 (47%), Gaps = 102/835 (12%)
Query: 131 SITDGISTSEHLLNRRKEIYGINKFTESPARGFWVYVWEALHDMTLMILAVCALVSLVVG 190
S T G++ + + R E YG N+ + W V E D+ + IL + A +S V+
Sbjct: 19 SETTGLTPDQ--VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 76
Query: 191 IATEGWPK-GAHDGLGIVMSILL---VVFVTATSDYKQSLQ-FKDLDREKKKITVQVARN 245
EG A +++ IL+ +V V + + +++ K+ + E K+ + R
Sbjct: 77 WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKV-YRADRK 135
Query: 246 GFRRKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV 296
+R I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV
Sbjct: 136 SVQR-IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 297 -NVNALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLN 351
+ A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLD 254
Query: 352 GVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXX 411
+ K+ V + + + G F + G+ W + +F
Sbjct: 255 EFGEQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAA 306
Query: 412 XPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKA 471
PEGLP +T LA ++M A+VR L + ET+G + ICSDKTGTLTTN M+V K
Sbjct: 307 IPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKM 366
Query: 472 CICEEIKEVDNSKGTPAFGSSIPASASKLL----------------LQSI---------- 505
I +++ S + S A ++L L +I
Sbjct: 367 FIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD 426
Query: 506 FNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV---- 561
FN T G E +G TETA+ + R SK+ + NSV
Sbjct: 427 FNETKG--------VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQL 478
Query: 562 -KKQMGVVIELPEGGFRVHC----------------KGASEIILAACDKFLNSNGEVVPL 604
KK+ + V+C KGA E ++ C+ ++ VP+
Sbjct: 479 MKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPM 537
Query: 605 NEAAVNHLNETIEKFAS--EALRTLCLACMEIG---NEFSADAPIPTEGY----TCIGIV 655
+ I+++ + + LR L LA + E D Y T +G+V
Sbjct: 538 TGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVV 597
Query: 656 GIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPE 711
G+ DP R V S+ +CR AGI V M+TGDN TA AI R GI +N A G E
Sbjct: 598 GMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGRE 657
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
F + E + + AR P K +V++L++ E+ A+TGDG NDAPAL +A+I
Sbjct: 658 FDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEI 716
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVN 831
G+AMG +GT VAK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++
Sbjct: 717 GIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCI 775
Query: 832 FSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 886
F +A L L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 776 FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 254/835 (30%), Positives = 392/835 (46%), Gaps = 102/835 (12%)
Query: 131 SITDGISTSEHLLNRRKEIYGINKFTESPARGFWVYVWEALHDMTLMILAVCALVSLVVG 190
S T G++ + + R E YG N+ + W V E D+ + IL + A +S V+
Sbjct: 19 SETTGLTPDQ--VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 76
Query: 191 IATEGWPK-GAHDGLGIVMSILL---VVFVTATSDYKQSLQ-FKDLDREKKKITVQVARN 245
EG A +++ IL+ +V V + + +++ K+ + E K+ + R
Sbjct: 77 WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKV-YRADRK 135
Query: 246 GFRRKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV 296
+R I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV
Sbjct: 136 SVQR-IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPV 194
Query: 297 -NVNALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLN 351
+ A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 195 PDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLD 254
Query: 352 GVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXX 411
+ K+ V + + + G F + G+ W + +F
Sbjct: 255 EFGEQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAA 306
Query: 412 XPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKA 471
PEGLP +T LA ++M A+VR L + ET+G + ICS KTGTLTTN M+V K
Sbjct: 307 IPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKM 366
Query: 472 CICEEIKEVDNSKGTPAFGSSIPASASKLL----------------LQSI---------- 505
I +++ S + S A ++L L +I
Sbjct: 367 FIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLD 426
Query: 506 FNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV---- 561
FN T G E +G TETA+ + R SK+ + NSV
Sbjct: 427 FNETKG--------VYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQL 478
Query: 562 -KKQMGVVIELPEGGFRVHC----------------KGASEIILAACDKFLNSNGEVVPL 604
KK+ + V+C KGA E ++ C+ ++ VP+
Sbjct: 479 MKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPM 537
Query: 605 NEAAVNHLNETIEKFAS--EALRTLCLACMEIG---NEFSADAPIPTEGY----TCIGIV 655
+ I+++ + + LR L LA + E D Y T +G+V
Sbjct: 538 TGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVV 597
Query: 656 GIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPE 711
G+ DP R V S+ +CR AGI V M+TGDN TA AI R GI +N A G E
Sbjct: 598 GMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGRE 657
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
F + E + + AR P K +V++L++ E+ A+TGDG NDAPAL +A+I
Sbjct: 658 FDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEI 716
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVN 831
G+AMG +GT VAK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++
Sbjct: 717 GIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCI 775
Query: 832 FSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 886
F +A L L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 776 FLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 290 bits (743), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 261/826 (31%), Positives = 390/826 (47%), Gaps = 98/826 (11%)
Query: 127 KLSTSITDGISTSEHLLNRRKEIY---GINKFTESPARGFWVYVWEALH---DMTLMILA 180
K T +T G++ + R KEI G N T P W+ L + L I A
Sbjct: 59 KYGTDLTRGLTNA-----RAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGA 113
Query: 181 VCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLDREKKKITV 240
+ ++ + ATE P + LG+V+S +++V S Y+++ + +D K +
Sbjct: 114 ILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIV-TGCFSYYQEAKSSRIMDSFKNMVPQ 172
Query: 241 Q--VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVN- 297
Q V R+G + I+ ++ GD+V + GD++PAD +S ++ SSLTGESEP
Sbjct: 173 QALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTR 232
Query: 298 ---VNALNPF-----LLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGD-DETPLQV 348
++ NP T G+ + +V G RT G++ ATL+ G + TP+ +
Sbjct: 233 SPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRI-ATLASGLEVGRTPIAI 291
Query: 349 KLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXX 408
++ II + +F V F L G W LE
Sbjct: 292 EIEHFIHIITGVAVFLGV--------SFFILSLILGYSW----------LEAVIFLIGII 333
Query: 409 XXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTV 468
PEGL VT+ L K+M LV++L A ET+GS ++ICSDKTGTLT N MTV
Sbjct: 334 VANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTV 393
Query: 469 LKACICEEIKEVD---NSKGTPAFGSSIPASA----SKLLLQSIFNNTGGEVVIGEGNKT 521
+I E D N G +S SA + L +++F V I K
Sbjct: 394 AHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPI---LKR 450
Query: 522 EILGTPTETAILEFGLLLGGDFQAERQAS-KIVKVEPFNSVKKQMGVVIE---LPEGGFR 577
+ G +E+A+L+ L G Q R + KIV++ PFNS K + E E +
Sbjct: 451 SVAGDASESALLKCIELCCGSVQGMRDRNPKIVEI-PFNSTNKYQLSIHENEKSSESRYL 509
Query: 578 VHCKGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLACMEI--- 634
+ KGA E IL C L NG PL E + R L +
Sbjct: 510 LVMKGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPED 568
Query: 635 ----GNEFSADAP-IPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINT 689
G F AD P PT +G++ + DP R V ++V CRSAGI V MVTGD+ T
Sbjct: 569 KYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT 628
Query: 690 AKAIARECGILTDNGIAIE------------------------GPEFREKSDEELSKLIP 725
AKAIA+ GI+++ IE G + ++ S E L ++
Sbjct: 629 AKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILH 688
Query: 726 KIQ--VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVA 783
V AR+SP K +V+ + G +VAVTGDG ND+PAL +ADIG+AMGI+G++V+
Sbjct: 689 YHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPALKKADIGVAMGISGSDVS 747
Query: 784 KESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPL 843
K++AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ + + GN PL
Sbjct: 748 KQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFL--VFIIGNVPL 805
Query: 844 T--AVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 887
V +L +++ D + A++LA E D+MKR P K + + N
Sbjct: 806 PLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 851
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 255/831 (30%), Positives = 387/831 (46%), Gaps = 96/831 (11%)
Query: 121 VEGIAEKLSTSITDGISTSEHLLNRRKEIY---GINKFTESPARGFWVYVWEALH---DM 174
++ + K T ++ G++ + R EI G N T P WV L M
Sbjct: 23 LDELHRKYGTDLSRGLTPA-----RAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSM 77
Query: 175 TLMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLDRE 234
L I A+ ++ + ATE P+ + LG+V+S VV +T Y Q + +
Sbjct: 78 LLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSA--VVIITGCFSYYQEAKSSKIMES 135
Query: 235 KKKITVQ---VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTG 291
K + Q V RNG + I+ +++ GD+V + GD++PAD +S ++ SSLTG
Sbjct: 136 FKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTG 195
Query: 292 ESEP-------VNVNALNP--FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLS---EG 339
ESEP N N L T G+ + +V G RT G++ ATL+ EG
Sbjct: 196 ESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRI-ATLASGLEG 254
Query: 340 GDDETPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILE 399
G +TP+ ++ II + +F V F L +TW LE
Sbjct: 255 G--QTPIAAEIEHFIHIITGVAVFLGVSFFI----------LSLILEYTW--------LE 294
Query: 400 FFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTG 459
PEGL VT+ L K+M LV++L A ET+GS ++ICSDKTG
Sbjct: 295 AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTG 354
Query: 460 TLTTNHMTVLKACICEEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEGN 519
TLT N MTV +I E D ++ S SA+ L L I V
Sbjct: 355 TLTQNRMTVAHMWSDNQIHEADTTENQSGV-SFDKTSATWLALSRIAGLCNRAVFQANQE 413
Query: 520 KTEIL-----GTPTETAILEFGLLLGGDFQAERQ-ASKIVKVEPFNSVKKQMGVVIELPE 573
IL G +E+A+L+ L G + R+ +KIV++ PFNS K + + P
Sbjct: 414 NLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNPN 472
Query: 574 GGFRVHC---KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLA 630
H KGA E IL C L +G+ PL+E + + R L
Sbjct: 473 TAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFC 531
Query: 631 CMEIGNEF--------SADAPIPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGITVRMV 682
+ + +E + D P + +G++ + DP R V ++V CRSAGI V MV
Sbjct: 532 HLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMV 591
Query: 683 TGDNINTAKAIARECGILTDNGIAIE------------------------GPEFREKSDE 718
TGD+ TAKAIA+ GI+++ +E G + ++ + E
Sbjct: 592 TGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSE 651
Query: 719 ELSKLIPKIQ--VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMG 776
+L ++ V AR+SP K +V+ + G +VAVTGDG ND+PA +ADIG+AMG
Sbjct: 652 QLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPASKKADIGVAMG 710
Query: 777 IAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSAC 836
IAG++V+K++AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ +
Sbjct: 711 IAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII 770
Query: 837 LTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 887
PL V +L +++ D + A++LA E D+MKR P K + + N
Sbjct: 771 ANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 821
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 286 bits (732), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 254/831 (30%), Positives = 386/831 (46%), Gaps = 96/831 (11%)
Query: 121 VEGIAEKLSTSITDGISTSEHLLNRRKEIY---GINKFTESPARGFWVYVWEALH---DM 174
++ + K T ++ G++ + R EI G N T P WV L M
Sbjct: 17 LDELHRKYGTDLSRGLTPA-----RAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSM 71
Query: 175 TLMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLDRE 234
L I A+ ++ + ATE P+ + LG+V+S VV +T Y Q + +
Sbjct: 72 LLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSA--VVIITGCFSYYQEAKSSKIMES 129
Query: 235 KKKITVQ---VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTG 291
K + Q V RNG + I+ +++ GD+V + GD++PAD +S ++ SSLTG
Sbjct: 130 FKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTG 189
Query: 292 ESEP-------VNVNALNP--FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLS---EG 339
ESEP N N L T G+ + +V G RT G++ ATL+ EG
Sbjct: 190 ESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRI-ATLASGLEG 248
Query: 340 GDDETPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILE 399
G +TP+ ++ II + +F V F L +TW LE
Sbjct: 249 G--QTPIAAEIEHFIHIITGVAVFLGVSFFI----------LSLILEYTW--------LE 288
Query: 400 FFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTG 459
PEGL VT+ L K+M LV++L A ET+GS ++ICS KTG
Sbjct: 289 AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTG 348
Query: 460 TLTTNHMTVLKACICEEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEGN 519
TLT N MTV +I E D ++ S SA+ L L I V
Sbjct: 349 TLTQNRMTVAHMWSDNQIHEADTTENQSGV-SFDKTSATWLALSRIAGLCNRAVFQANQE 407
Query: 520 KTEIL-----GTPTETAILEFGLLLGGDFQAERQ-ASKIVKVEPFNSVKKQMGVVIELPE 573
IL G +E+A+L+ L G + R+ +KIV++ PFNS K + + P
Sbjct: 408 NLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNPN 466
Query: 574 GGFRVHC---KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLA 630
H KGA E IL C L +G+ PL+E + + R L
Sbjct: 467 TAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFC 525
Query: 631 CMEIGNEF--------SADAPIPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGITVRMV 682
+ + +E + D P + +G++ + DP R V ++V CRSAGI V MV
Sbjct: 526 HLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMV 585
Query: 683 TGDNINTAKAIARECGILTDNGIAIE------------------------GPEFREKSDE 718
TGD+ TAKAIA+ GI+++ +E G + ++ + E
Sbjct: 586 TGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSE 645
Query: 719 ELSKLIPKIQ--VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMG 776
+L ++ V AR+SP K +V+ + G +VAVTGDG ND+PA +ADIG+AMG
Sbjct: 646 QLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPASKKADIGVAMG 704
Query: 777 IAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSAC 836
IAG++V+K++AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ +
Sbjct: 705 IAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII 764
Query: 837 LTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 887
PL V +L +++ D + A++LA E D+MKR P K + + N
Sbjct: 765 ANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 815
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 273 bits (699), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 254/835 (30%), Positives = 389/835 (46%), Gaps = 104/835 (12%)
Query: 121 VEGIAEKLSTSITDGISTS--EHLLNRRKEIYGINKFTESPARGFWVYVWEA------LH 172
V + +K TS T G+S S LL R G N P RG YV A L
Sbjct: 58 VAELEQKYQTSATKGLSASLAAELLLRD----GPNAL--RPPRGTPEYVKFARQLAGGLQ 111
Query: 173 DMTLMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLD 232
+ + A+C L++ + A+EG D L + ++++ VV VT Y Q + ++
Sbjct: 112 CLMWVAAAIC-LIAFAIQ-ASEG-DLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNII 168
Query: 233 REKKKITVQ---VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSL 289
K + Q V R+G + +I+ L+ GD+V + GD+VPAD + ++ SSL
Sbjct: 169 ASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSL 228
Query: 290 TGESEPVN----------VNALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEG 339
TGESEP + N S T G+ + LV G RT G++ A+L+ G
Sbjct: 229 TGESEPQTRSPECTHESPLETRNIAFFS-TMCLEGTAQGLVVNTGDRTIIGRI-ASLASG 286
Query: 340 GDDE-TPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEIL 398
++E TP+ +++ II + + F F V + G L +
Sbjct: 287 VENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAM---------------CIGYTFLRAM 331
Query: 399 EFFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKT 458
FF PEGL VT+ L+ K++ + +V++L A ET+GS + ICSDKT
Sbjct: 332 VFFMAIVVAYV---PEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKT 388
Query: 459 GTLTTNHMTVLKACICEEIKEVDNSKGTPAFGSSIPASASK---------LLLQSIFNNT 509
GTLT N MTV I D ++ G + S+ L ++ F +
Sbjct: 389 GTLTQNRMTVSHLWFDNHIHSADTTEDQS--GQTFDQSSETWRALCRVLTLCNRAAFKSG 446
Query: 510 GGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSVKK-QMGV- 567
V + K ++G +ETA+L+F L G+ R+ V PFNS K Q+ +
Sbjct: 447 QDAVPV---PKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIH 503
Query: 568 VIELPEGGFRVHC-KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRT 626
+E P V KGA E +L C L G+ +PL+E R
Sbjct: 504 TLEDPRDPRHVLVMKGAPERVLERCSSIL-IKGQELPLDEQWREAFQTAYLSLGGLGERV 562
Query: 627 LCLACMEI-------GNEFSADA-PIPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGIT 678
L + + G F +A PT G + G+V + DP R V ++V CR+AGI
Sbjct: 563 LGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIR 622
Query: 679 VRMVTGDNINTAKAIARECGILTDNGIAIEGPEFR---------------------EKSD 717
V MVTGD+ TAKAIA GI+++ +E R + D
Sbjct: 623 VIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKD 682
Query: 718 EELSKLIPKIQ-----VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
+ S+L+ ++ V AR+SP K +V+ + LG +VAVTGDG ND+PAL +ADIG
Sbjct: 683 MDPSELVEALRTHPEMVFARTSPQQKLVIVESCQR-LGAIVAVTGDGVNDSPALKKADIG 741
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNF 832
+AMGIAG++ AK +AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ L
Sbjct: 742 VAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYL 801
Query: 833 SSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 887
++ PL + +L++ + D +++LA E D+M P K + + N
Sbjct: 802 IYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 856
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 176/744 (23%), Positives = 323/744 (43%), Gaps = 125/744 (16%)
Query: 108 EGHD---IKKLKVHGGVEGIAEKLSTSITDGISTSEHLLNRRKEIYGINKFTESPARGFW 164
+GHD ++ GG + E + + T TSE ++ RR++ YG+N+ E F
Sbjct: 56 DGHDAEEEEEEATPGGGRVVPEDMLQTDTRVGLTSEEVVQRRRK-YGLNQMKEEKENHFL 114
Query: 165 VYVWEALHDMTLMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQ 224
++ + + ++ L + E W G++ +LL+ A + Q
Sbjct: 115 KFLGFFVGPIQFVMEGAAVLAA-----GLEDWVD-----FGVICGLLLL---NAVVGFVQ 161
Query: 225 SLQFKDLDREKKK---ITVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFS 281
Q + E KK + V R+G ++I +++PGDI+ + G +PADG V+ +
Sbjct: 162 EFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDA 221
Query: 282 VL-INESSLTGESEPVNVNALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGG 340
L +++S+LTGES V+ + + + + + V+ G +++T G T G+ A ++
Sbjct: 222 FLQVDQSALTGESLAVDKHKGDQ-VFASSAVKRGEAFVVITATGDNTFVGRAAALVNAAS 280
Query: 341 DDETPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEF 400
LNG+ TI+ L + T ++ F R + ++ILEF
Sbjct: 281 GGSGHFTEVLNGIGTIL----LILVIFTLLIVWVSSFYRS-----------NPIVQILEF 325
Query: 401 FXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGT 460
P GLP VT ++A + KA+V+ L+A E++ +CSDKTGT
Sbjct: 326 ---TLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGT 382
Query: 461 LTTNHMTV---------------LKACICEEIKEVDNSKGTPAFGSSIPASASKLLLQSI 505
LT N +++ L AC+ K+ KG A K L+S+
Sbjct: 383 LTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKK----KGIDAI--------DKAFLKSL 430
Query: 506 FNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSVKKQM 565
+ V+ + K+++ PF+ V K++
Sbjct: 431 KYYPRAKSVLSK--------------------------------YKVLQFHPFDPVSKKV 458
Query: 566 GVVIELPEGGFRVHC-KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEAL 624
V+E P+G R+ C KGA +L + E P+ E + +FA+
Sbjct: 459 VAVVESPQGE-RITCVKGAPLFVLKTVE-------EDHPIPEEVDQAYKNKVAEFATRGF 510
Query: 625 RTLCLACMEIGNEFSADAPIPTEG-YTCIGIVGIKDPMRPGVKESVAICRSAGITVRMVT 683
R+L +A EG + +GI+ DP R ++V ++ G++++M+T
Sbjct: 511 RSLGVARKR------------GEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLT 558
Query: 684 GDNINTAKAIARECGILTD--NGIAIEGPEFREKSDEELSKLIPKIQVMARSSPMDKHTL 741
GD + A+ +R+ G+ T+ N + + E+ + A P K+ +
Sbjct: 559 GDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNV 618
Query: 742 VKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVT 801
V+ L+ G +VA+TGDG NDAP+L +AD G+A+ ++ A+ +AD++ L I+
Sbjct: 619 VEILQQR-GYLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIID 676
Query: 802 VAKWGRSVYINIQKFVQFQLTVNV 825
K R ++ + +V +++ +++
Sbjct: 677 ALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 177/750 (23%), Positives = 323/750 (43%), Gaps = 98/750 (13%)
Query: 121 VEGIAEKLSTSITDGISTSEHLLNRRKEIYGINKF---TESPARGFWVYVWEALHDMTLM 177
+E + ++L S +G++T E R +I+G NK ES F ++W L +M
Sbjct: 19 IEEVFQQLKCS-REGLTTQEG--EDRIQIFGPNKLEEKKESKLLKFLGFMWNPLS--WVM 73
Query: 178 ILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILL---VVFVTATSDYKQSLQFKDLDRE 234
+A ++L G +G P D +GI+ +++ + F+ + +
Sbjct: 74 EMAAIMAIALANG---DGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAP 130
Query: 235 KKKITVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESE 294
K K V R+G + L+PGDIV + +GD +PAD + G + +++S+LTGES
Sbjct: 131 KTK----VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESL 186
Query: 295 PVNVNALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVA 354
PV + + SG+ + G + +V G+ T +GK + D T V
Sbjct: 187 PVTKHPGQE-VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-----DSTNQVGHFQKVL 240
Query: 355 TIIGKI---GLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXX 411
T IG + +V +++ + RK ++G D+ L +L
Sbjct: 241 TAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGI------DNLLVLL----------IGG 284
Query: 412 XPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKA 471
P +P +++++A ++ A+ + + A E M +CSDKTGTLT N ++V K
Sbjct: 285 IPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKN 344
Query: 472 CICEEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEGNKTEILGTPTETA 531
+ K V+ + LL ++ + + I + +L P E
Sbjct: 345 LVEVFCKGVEKDQ--------------VLLFAAMASRVENQDAI-DAAMVGMLADPKEA- 388
Query: 532 ILEFGLLLGGDFQAERQASKIVKVEPFNSVKKQMGVVIELPEGGFRVHCKGASEIILAAC 591
R + V PFN V K+ + G + KGA E IL
Sbjct: 389 ---------------RAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELA 433
Query: 592 DKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLACMEIGNEFSADAPIPTEGYTC 651
+ + +V+ + I+K+A LR+L +A + + P E
Sbjct: 434 KASNDLSKKVLSI-----------IDKYAERGLRSLAVARQVVPEKTKESPGAPWE---F 479
Query: 652 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 711
+G++ + DP R E++ + G+ V+M+TGD + K R G+ T+ +
Sbjct: 480 VGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTN--MYPSSAL 537
Query: 712 FREKSDEELS-----KLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPAL 766
D L+ +LI K A P K+ +VK L+ +V +TGDG NDAPAL
Sbjct: 538 LGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQER-KHIVGMTGDGVNDAPAL 596
Query: 767 HEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVV 826
+ADIG+A+ A T+ A+ ++D+++ + S I++ R+++ ++ + + +++ +
Sbjct: 597 KKADIGIAVADA-TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSIT-I 654
Query: 827 ALIVNFSSACLTGNAPLTAVQLLWVNMIMD 856
++ F L +A +L + ++ D
Sbjct: 655 RIVFGFMLIALIWEFDFSAFMVLIIAILND 684
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 576
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 577 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 618
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVV 826
+A+G +G++VA ES D++++ D+ +V + R I++ + + L NV+
Sbjct: 619 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 671
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 19/224 (8%)
Query: 239 TVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNV 298
T V R+G + + ++ GDIV + G+++P DG+ V G S ++ES ++GE PV +
Sbjct: 212 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-L 269
Query: 299 NALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIG 358
+ + T G K+ T VG T +++ + + + P+Q + V
Sbjct: 270 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFI 329
Query: 359 KIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLPL 418
L A+ F +W + L L F P L
Sbjct: 330 PTVLLVAISAF---------------IYWYFIAHAPL--LFAFTTLIAVLVVACPCAFGL 372
Query: 419 AVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLT 462
A +L M K L+++ A E T++ DKTGTLT
Sbjct: 373 ATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 416
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 498
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 499 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 540
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVV 826
+A+G +G++VA ES D++++ D+ +V + R I++ + + L NV+
Sbjct: 541 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 593
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 19/224 (8%)
Query: 239 TVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNV 298
T V R+G + + ++ GDIV + G+++P DG+ V G S ++ES ++GE PV +
Sbjct: 134 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-L 191
Query: 299 NALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIG 358
+ + T G K+ T VG T +++ + + + P+Q + V
Sbjct: 192 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFI 251
Query: 359 KIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLPL 418
L A+ F +W + L L F P L
Sbjct: 252 PTVLLVAISAF---------------IYWYFIAHAPL--LFAFTTLIAVLVVACPCAFGL 294
Query: 419 AVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLT 462
A +L M K L+++ A E T++ DKTGTLT
Sbjct: 295 ATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 338
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 36/224 (16%)
Query: 652 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 711
+ ++ ++DP++ E++ + +GI + M+TGD+ TA+A+A GI
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK----------- 594
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
+V+A P DK +V L+ G +VA+ GDG NDAPAL +ADI
Sbjct: 595 ----------------KVVAEIMPEDKSRIVSELKDK-GLIVAMAGDGVNDAPALAKADI 637
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVN 831
G+AMG GT+VA ESA V +L + I + S NI++ + F NV+ V
Sbjct: 638 GIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLG--VP 694
Query: 832 FSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKR 875
++ L PLT LL MI AL+ + N +KR
Sbjct: 695 LAAGVLY---PLTG--LLLSPMIAAAAMALSSVSVIINALRLKR 733
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 241 QVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNVNA 300
++ +G ++S+ ++ GD++ + G+++P DG G S ++ES +TGE PV A
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEA 287
Query: 301 LNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKI 360
+ ++ T Q GS M VG T +++ +S+ P+Q + V+
Sbjct: 288 -SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPA 346
Query: 361 GLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEF-FXXXXXXXXXXXPEGLPLA 419
+ AV++F V W G L + P L LA
Sbjct: 347 VILVAVLSFIV---------------WALLGPQ--PALSYGLIAAVSVLIIACPCALGLA 389
Query: 420 VTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNH 465
+S+ + K L+++ A E M ++ DKTGTLT H
Sbjct: 390 TPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGH 435
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 30/162 (18%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 204
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 205 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 246
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQ 814
+A+G +G++VA ES D++++ D+ +V + R I+
Sbjct: 247 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 30/162 (18%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 204
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 205 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 246
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQ 814
+A+G +G++VA ES D++++ D+ +V + R I+
Sbjct: 247 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 30/162 (18%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
G++ + D +RP +E+++ ++ GI M+TGDN AK +A E G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
D+ ++++P +K VK ++ V A+ GDG NDAPAL +AD+G
Sbjct: 184 ----DDYFAEVLPH----------EKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVG 227
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQ 814
+A+G AGT+VA E+AD++++ ++ + + + R Y ++
Sbjct: 228 IAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 30/158 (18%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
G++ + D +RP +E+++ ++ GI M+TGDN AK +A E G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
D+ ++++P +K VK ++ V A+ GDG NDAPAL +AD+G
Sbjct: 184 ----DDYFAEVLPH----------EKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVG 227
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVY 810
+A+G AGT+VA E+AD++++ ++ + + + R Y
Sbjct: 228 IAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTY 264
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 30/155 (19%)
Query: 653 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 712
GI+ + D ++ K +V + GI V +TGDN +A+AI+RE +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDL----------- 184
Query: 713 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 772
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 185 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 226
Query: 773 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGR 807
+A+G +G++VA ES D++++ D+ +V + R
Sbjct: 227 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 42/145 (28%)
Query: 657 IKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEFREKS 716
+K+ +P V+E + GI V +TGDN +A+AI+RE +
Sbjct: 23 LKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRELNLDL--------------- 63
Query: 717 DEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMG 776
V+A P K VK L+ EVVA GDG NDAPAL +AD+G+A+G
Sbjct: 64 ------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 109
Query: 777 IAGTEVAKESADVIILDDNFSTIVT 801
S D++++ D+ +V
Sbjct: 110 ---------SGDIVLIRDDLRDVVA 125
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 532 ILEFGLLLGGDFQAERQ-ASKIVKVE--PFNSVKKQMGVVIELPEGGFRVHCKGASEIIL 588
+L+ +L G D ++ R AS+ K++ PF+ +++M VV+ ++ CKGA + IL
Sbjct: 35 LLDTAVLEGTDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEIL 94
Query: 589 AACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLACMEI----GNEFSAD-AP 643
C + + NGE+VPL++ + + + + LR + +A + G+ AD +
Sbjct: 95 NVCSQ-VRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESD 153
Query: 644 IPTEGY 649
+ EGY
Sbjct: 154 LILEGY 159
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 652 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 711
I I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
E S L SP DK +++ L+ G V + GDG NDA AL AD+
Sbjct: 176 -----QEYYSNL----------SPEDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADV 219
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAK 804
+AMG G +++K AD+I++ ++ T++ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 652 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 711
I I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
E S L SP DK +++ L+ G V + GDG NDA AL AD+
Sbjct: 176 -----QEYYSNL----------SPEDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADV 219
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAK 804
+AMG G +++K AD+I++ ++ T++ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 652 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 711
I I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 712 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 771
E S L SP DK +++ L+ G V + GDG NDA AL AD+
Sbjct: 176 -----QEYYSNL----------SPEDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADV 219
Query: 772 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAK 804
+AMG G +++K AD+I++ ++ T++ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 259 GDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNVNALNP--FLLSGTKVQNGSC 316
GDI+ + G + P DG + G S +++ES +TGE+ PV A P +++G+ QNGS
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPV---AKKPGSTVIAGSINQNGSL 100
Query: 317 KMLVTTVGMRTQWGKLMATLSE 338
+ T VG T +++ + E
Sbjct: 101 LICATHVGADTTLSQIVKLVEE 122
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 239 TVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNV 298
T V R+G + + ++ GDIV + G+++P DG+ V G S ++ES ++GE PV +
Sbjct: 13 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-L 70
Query: 299 NALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLM 333
+ + T G K+ T VG T +++
Sbjct: 71 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIV 105
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 36/149 (24%)
Query: 570 ELPEGGFRVHCKGASEIILAACD-KFLNSNGEVVPLNE---------AAVNHLNETIEKF 619
+LP+G FR KG E+ + A K S +++P+ + LN K
Sbjct: 28 QLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKL 87
Query: 620 ASEALRT-----LC-----------LACM--EIGNEFSADAPIPTEGYTCIGIVGIKDPM 661
AL T LC L CM EIG + D I + + I I PM
Sbjct: 88 YRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIA----PM 143
Query: 662 RPGVKESVAI----CRSAGITVRMVTGDN 686
R V+E V + GITV +TGD+
Sbjct: 144 RSLVQEMVGSFGKRLATYGITVAELTGDH 172
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 36/149 (24%)
Query: 570 ELPEGGFRVHCKGASEIILAACD-KFLNSNGEVVPLNE---------AAVNHLNETIEKF 619
+LP+G FR KG E+ + A K S +++P+ + LN K
Sbjct: 28 QLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKL 87
Query: 620 ASEALRT-----LC-----------LACM--EIGNEFSADAPIPTEGYTCIGIVGIKDPM 661
AL T LC L CM EIG + D I + + I I PM
Sbjct: 88 YRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIA----PM 143
Query: 662 RPGVKESVAI----CRSAGITVRMVTGDN 686
R V+E V + GITV +TGD+
Sbjct: 144 RSLVQEMVGSFGKRLATYGITVAELTGDH 172
>pdb|4AQR|D Chain D, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 57
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 17 TSEEALQRWRKLCGFVKNRKRRFRFTANLSKRFEAEAIRR 56
+S E LQ+WRK V N RRFR+T +L K E +R+
Sbjct: 1 SSIERLQQWRK-AALVLNASRRFRYTLDLKKEQETREMRQ 39
>pdb|2L1W|B Chain B, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 25
Score = 36.6 bits (83), Expect = 0.077, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 21 ALQRWRKLCGFVKNRKRRFRFTANL 45
A QRWR VKNR RRFR +NL
Sbjct: 1 ARQRWRSSVSIVKNRARRFRMISNL 25
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 705 IAIEGPEFREKSDEELSKLIPKIQVMARSSP---------MDKHTLVKHLRTTLG---EV 752
+ I+ PE ++ E LS+ + + +S P +DK ++ LR + E
Sbjct: 149 LLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEE 208
Query: 753 VAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTV 802
+ V GD ND EA + +AM A E KE++D++ L +N S + V
Sbjct: 209 IVVFGDNENDLFMFEEAGLRVAMENA-IEKVKEASDIVTLTNNDSGVSYV 257
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 723 LIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV 782
L + V S + R + E++A GDG ND P L A IG+AMG A +V
Sbjct: 184 LFADVNVAGTSKATGLSLFADYYRVKVSEIMA-CGDGGNDIPMLKAAGIGVAMGNASEKV 242
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 741 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDN 795
L++++ T EV+A+ GDG ND + A +G+AMG A E K++AD I L ++
Sbjct: 205 LLENIGMTREEVIAI-GDGYNDLSMIKFAGMGVAMGNA-QEPVKKAADYITLTND 257
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 741 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVI 790
+++H L E ++ GDG ND L A IG+AMG A +V K +AD +
Sbjct: 195 IIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 741 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVI 790
+++H L E ++ GDG ND L A IG+AMG A +V K +AD +
Sbjct: 195 IIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 413 PEGLPLAVTLSLAFAMKKMMNDKALVRHL 441
PEGLP +T LA ++M A+VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 661 MRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEFREKSDEEL 720
+ PGV E + +AG + M T A+AIA G+ D L
Sbjct: 105 LYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGL-----------------DTRL 147
Query: 721 SKLIPKIQVMARSSPMDKHTLVKHLRTTLG---EVVAVTGDGTNDAPALHEAD---IGLA 774
+ +I + R P L H+ LG E V GDG DA A IG++
Sbjct: 148 T-VIAGDDSVERGKPHPDMAL--HVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVS 204
Query: 775 MGIAG-TEVAKESADVIILDDNFSTIVT 801
G++G E+ + AD ++ D+F VT
Sbjct: 205 YGVSGPDELMRAGADTVV--DSFPAAVT 230
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 652 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAI 693
I +V P+ PGV+E+VA+C+ G+ V + + ++ + +
Sbjct: 86 ISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHXLEKV 127
>pdb|3BBO|E Chain E, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 269
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 509 TGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSVKKQMGVV 568
+G EV I GN + P TAI + LG Q R A + K+ K+
Sbjct: 114 SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKL----IAKEGKSAT 169
Query: 569 IELPEGGFRVHCKGASEII 587
++LP G R+ K S +
Sbjct: 170 LKLPSGEVRLISKNCSATV 188
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 741 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDN 795
L++++ T EV+A+ GDG ND + A G+A G A E K++AD I L ++
Sbjct: 205 LLENIGXTREEVIAI-GDGYNDLSXIKFAGXGVAXGNA-QEPVKKAADYITLTND 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,656,956
Number of Sequences: 62578
Number of extensions: 1091718
Number of successful extensions: 2681
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2565
Number of HSP's gapped (non-prelim): 62
length of query: 950
length of database: 14,973,337
effective HSP length: 108
effective length of query: 842
effective length of database: 8,214,913
effective search space: 6916956746
effective search space used: 6916956746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)