Query 002233
Match_columns 949
No_of_seqs 239 out of 353
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 19:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 2E-175 4E-180 1503.0 29.5 646 191-915 227-885 (889)
2 PF10497 zf-4CXXC_R1: Zinc-fin 99.8 2.1E-20 4.5E-25 175.7 2.5 70 191-260 5-85 (105)
3 PF08879 WRC: WRC; InterPro: 99.6 1.1E-15 2.3E-20 124.4 2.5 43 17-59 1-43 (46)
4 PF02373 JmjC: JmjC domain, hy 99.5 2.7E-14 5.8E-19 131.7 4.1 83 764-862 30-114 (114)
5 PF13621 Cupin_8: Cupin-like d 98.9 2.6E-10 5.5E-15 117.4 1.3 40 827-866 207-249 (251)
6 smart00558 JmjC A domain famil 96.9 0.00066 1.4E-08 56.9 3.0 54 598-669 3-56 (57)
7 KOG2131 Uncharacterized conser 95.8 0.0094 2E-07 67.4 4.7 61 823-883 262-323 (427)
8 cd02340 ZZ_NBR1_like Zinc fing 95.1 0.012 2.6E-07 47.9 1.7 30 322-351 1-31 (43)
9 cd02339 ZZ_Mind_bomb Zinc fing 93.5 0.042 9.1E-07 45.3 1.7 30 322-351 1-32 (45)
10 cd02335 ZZ_ADA2 Zinc finger, Z 93.4 0.043 9.3E-07 45.6 1.6 30 323-352 2-33 (49)
11 cd02249 ZZ Zinc finger, ZZ typ 93.3 0.046 1E-06 44.7 1.7 32 323-354 2-34 (46)
12 COG1917 Uncharacterized conser 92.2 0.071 1.5E-06 51.4 1.6 55 801-860 59-115 (131)
13 PF07883 Cupin_2: Cupin domain 92.1 0.068 1.5E-06 45.3 1.2 26 830-855 38-63 (71)
14 KOG2130 Phosphatidylserine-spe 90.6 0.16 3.4E-06 57.0 2.4 59 809-869 242-303 (407)
15 cd02344 ZZ_HERC2 Zinc finger, 90.3 0.16 3.6E-06 42.0 1.7 31 322-352 1-33 (45)
16 PF00569 ZZ: Zinc finger, ZZ t 90.0 0.17 3.7E-06 41.6 1.6 35 320-354 3-39 (46)
17 COG0662 {ManC} Mannose-6-phosp 89.3 0.25 5.5E-06 48.1 2.5 40 828-867 74-113 (127)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 89.0 0.23 4.9E-06 41.7 1.6 31 323-353 2-36 (48)
19 smart00291 ZnF_ZZ Zinc-binding 89.0 0.23 5E-06 40.4 1.6 36 321-356 4-40 (44)
20 cd02345 ZZ_dah Zinc finger, ZZ 87.7 0.3 6.6E-06 40.8 1.6 33 322-354 1-35 (49)
21 cd02338 ZZ_PCMF_like Zinc fing 86.8 0.34 7.3E-06 40.5 1.4 31 322-352 1-33 (49)
22 cd02337 ZZ_CBP Zinc finger, ZZ 85.4 0.45 9.8E-06 38.6 1.4 29 323-352 2-31 (41)
23 TIGR03214 ura-cupin putative a 85.0 0.45 9.7E-06 52.0 1.6 31 824-854 213-243 (260)
24 PRK09943 DNA-binding transcrip 81.7 1.1 2.4E-05 46.0 2.8 59 802-866 125-183 (185)
25 cd02334 ZZ_dystrophin Zinc fin 79.0 1.2 2.6E-05 37.6 1.7 34 322-355 1-36 (49)
26 KOG1356 Putative transcription 78.8 1.1 2.3E-05 55.8 1.9 36 318-353 226-261 (889)
27 PRK13290 ectC L-ectoine syntha 77.9 1.5 3.3E-05 43.2 2.3 37 828-866 74-110 (125)
28 cd00162 RING RING-finger (Real 77.6 1.8 3.9E-05 32.9 2.2 42 196-244 2-43 (45)
29 cd02343 ZZ_EF Zinc finger, ZZ 76.0 1.7 3.6E-05 36.8 1.7 31 322-352 1-32 (48)
30 PF07649 C1_3: C1-like domain; 75.8 1.3 2.9E-05 33.2 1.0 27 323-349 2-29 (30)
31 PHA02926 zinc finger-like prot 75.7 1.1 2.5E-05 48.4 0.8 33 212-245 196-228 (242)
32 TIGR00218 manA mannose-6-phosp 75.0 1.5 3.2E-05 48.8 1.5 15 834-848 156-170 (302)
33 PF01050 MannoseP_isomer: Mann 73.7 2 4.3E-05 43.8 1.9 22 834-855 107-128 (151)
34 COG4101 Predicted mannose-6-ph 73.4 1.5 3.3E-05 43.4 1.0 25 830-854 89-113 (142)
35 PF13639 zf-RING_2: Ring finge 72.7 1.4 3.1E-05 35.1 0.5 30 206-243 15-44 (44)
36 PRK15131 mannose-6-phosphate i 72.4 1.9 4.1E-05 50.1 1.6 17 832-848 240-256 (389)
37 PRK04190 glucose-6-phosphate i 68.5 3.6 7.9E-05 43.5 2.5 41 828-869 119-159 (191)
38 PHA02929 N1R/p28-like protein; 68.3 3.4 7.3E-05 45.2 2.3 47 192-245 173-225 (238)
39 KOG0320 Predicted E3 ubiquitin 67.5 8.7 0.00019 40.6 5.0 47 191-244 129-175 (187)
40 KOG0317 Predicted E3 ubiquitin 66.0 4.1 8.8E-05 45.6 2.4 47 191-246 237-283 (293)
41 COG1482 ManA Phosphomannose is 65.8 3.1 6.8E-05 47.1 1.5 21 831-851 160-180 (312)
42 smart00184 RING Ring finger. E 64.6 4.2 9.2E-05 29.7 1.6 27 210-242 13-39 (39)
43 PF13920 zf-C3HC4_3: Zinc fing 63.6 3.7 8E-05 33.8 1.2 43 194-244 3-45 (50)
44 PLN02288 mannose-6-phosphate i 62.4 3.9 8.4E-05 47.7 1.5 16 833-848 255-270 (394)
45 PLN03208 E3 ubiquitin-protein 62.0 7.3 0.00016 41.5 3.3 51 192-245 17-77 (193)
46 PF00190 Cupin_1: Cupin; Inte 60.1 7.7 0.00017 38.3 2.9 38 830-867 81-125 (144)
47 TIGR01479 GMP_PMI mannose-1-ph 59.5 4.8 0.0001 47.6 1.6 31 826-856 412-442 (468)
48 PF13923 zf-C3HC4_2: Zinc fing 58.9 7.1 0.00015 30.6 2.0 29 207-242 11-39 (39)
49 KOG4582 Uncharacterized conser 58.6 5 0.00011 44.7 1.5 33 321-353 152-186 (278)
50 TIGR00599 rad18 DNA repair pro 57.7 11 0.00023 44.3 3.9 48 192-248 25-72 (397)
51 PF13248 zf-ribbon_3: zinc-rib 57.6 5.2 0.00011 29.3 0.9 25 321-345 2-26 (26)
52 KOG0823 Predicted E3 ubiquitin 57.1 6.5 0.00014 42.9 1.9 47 192-244 46-92 (230)
53 PF15227 zf-C3HC4_4: zinc fing 57.0 5.3 0.00011 32.3 1.0 28 212-242 15-42 (42)
54 cd02342 ZZ_UBA_plant Zinc fing 55.9 7.8 0.00017 32.2 1.8 31 322-352 1-33 (43)
55 smart00154 ZnF_AN1 AN1-like Zi 53.9 8.3 0.00018 31.0 1.6 30 196-229 1-30 (39)
56 PF13240 zinc_ribbon_2: zinc-r 53.8 6.5 0.00014 28.4 0.9 23 323-345 1-23 (23)
57 PF14634 zf-RING_5: zinc-RING 52.5 12 0.00026 30.2 2.3 42 196-244 2-44 (44)
58 PRK15460 cpsB mannose-1-phosph 51.9 8.3 0.00018 46.1 1.9 30 825-854 420-449 (478)
59 PTZ00194 60S ribosomal protein 51.0 6.9 0.00015 40.0 0.9 43 802-846 18-60 (143)
60 PF00097 zf-C3HC4: Zinc finger 50.8 6.9 0.00015 30.5 0.7 29 209-242 13-41 (41)
61 PF08007 Cupin_4: Cupin superf 50.5 11 0.00024 42.3 2.6 39 829-867 176-214 (319)
62 smart00249 PHD PHD zinc finger 50.1 12 0.00026 28.9 2.0 46 195-242 1-47 (47)
63 KOG0978 E3 ubiquitin ligase in 50.1 4 8.6E-05 50.6 -1.1 44 192-243 642-685 (698)
64 PF02041 Auxin_BP: Auxin bindi 48.2 10 0.00022 39.3 1.6 41 808-853 75-115 (167)
65 smart00835 Cupin_1 Cupin. This 48.0 14 0.00031 36.5 2.6 58 802-859 47-107 (146)
66 PRK13305 sgbH 3-keto-L-gulonat 46.0 18 0.00038 39.1 3.1 48 856-913 6-54 (218)
67 TIGR03404 bicupin_oxalic bicup 44.5 15 0.00033 42.5 2.5 80 802-883 262-342 (367)
68 TIGR03214 ura-cupin putative a 44.1 16 0.00035 40.2 2.5 47 803-854 77-123 (260)
69 KOG2508 Predicted phospholipas 43.7 37 0.00081 39.6 5.3 38 491-528 34-74 (437)
70 KOG2177 Predicted E3 ubiquitin 43.4 29 0.00064 35.7 4.2 44 191-243 11-54 (386)
71 PRK13306 ulaD 3-keto-L-gulonat 42.9 25 0.00055 37.6 3.7 64 856-929 6-70 (216)
72 KOG0457 Histone acetyltransfer 42.6 9.8 0.00021 44.8 0.6 32 320-351 13-46 (438)
73 PF00628 PHD: PHD-finger; Int 42.2 3.8 8.3E-05 33.5 -2.0 48 195-243 1-49 (51)
74 PF12678 zf-rbx1: RING-H2 zinc 39.8 24 0.00052 31.7 2.5 42 195-243 32-73 (73)
75 PF01238 PMI_typeI: Phosphoman 39.5 11 0.00023 43.7 0.2 16 833-848 254-269 (373)
76 PF02938 GAD: GAD domain; Int 39.2 11 0.00024 35.2 0.2 71 770-851 22-93 (95)
77 COG5114 Histone acetyltransfer 38.5 8.9 0.00019 43.6 -0.5 30 322-351 6-37 (432)
78 PF12861 zf-Apc11: Anaphase-pr 38.2 26 0.00057 33.0 2.6 48 192-244 31-79 (85)
79 PRK01191 rpl24p 50S ribosomal 38.0 14 0.00031 36.8 0.8 41 803-845 18-58 (120)
80 COG5432 RAD18 RING-finger-cont 38.0 17 0.00038 41.0 1.6 43 192-244 24-67 (391)
81 KOG3899 Uncharacterized conser 37.2 13 0.00028 42.0 0.4 48 208-260 318-374 (381)
82 KOG1814 Predicted E3 ubiquitin 36.2 33 0.00071 40.5 3.4 24 205-229 291-314 (445)
83 TIGR00570 cdk7 CDK-activating 36.0 33 0.00072 39.1 3.4 43 194-244 4-51 (309)
84 PF10571 UPF0547: Uncharacteri 34.8 24 0.00051 26.4 1.4 23 323-345 2-24 (26)
85 KOG3905 Dynein light intermedi 33.4 18 0.0004 41.7 0.9 67 770-846 243-313 (473)
86 PRK04023 DNA polymerase II lar 33.1 22 0.00049 45.9 1.6 30 191-222 624-657 (1121)
87 PRK10371 DNA-binding transcrip 32.5 31 0.00068 38.3 2.5 34 823-856 58-91 (302)
88 PRK13264 3-hydroxyanthranilate 32.5 32 0.00069 36.4 2.4 63 807-871 55-118 (177)
89 KOG1280 Uncharacterized conser 32.1 19 0.00042 41.4 0.8 34 318-351 5-40 (381)
90 TIGR03037 anthran_nbaC 3-hydro 31.2 33 0.00073 35.7 2.3 45 827-871 68-112 (159)
91 PF06844 DUF1244: Protein of u 30.4 21 0.00045 32.3 0.6 13 217-229 11-23 (68)
92 PF10122 Mu-like_Com: Mu-like 30.1 24 0.00053 30.4 0.9 29 207-244 4-32 (51)
93 smart00504 Ubox Modified RING 30.0 49 0.0011 27.8 2.7 42 195-245 3-44 (63)
94 PF09567 RE_MamI: MamI restric 28.6 25 0.00054 39.1 0.9 22 322-343 83-104 (314)
95 PF13216 DUF4024: Protein of u 28.0 29 0.00063 27.1 0.9 21 648-668 3-23 (35)
96 COG0269 SgbH 3-hexulose-6-phos 27.7 73 0.0016 34.8 4.1 51 856-916 6-57 (217)
97 PRK11171 hypothetical protein; 27.6 44 0.00096 36.8 2.6 28 826-853 98-125 (266)
98 PRK11171 hypothetical protein; 27.2 36 0.00078 37.5 1.8 32 823-854 217-248 (266)
99 cd00065 FYVE FYVE domain; Zinc 27.2 35 0.00077 28.4 1.4 34 194-228 3-38 (57)
100 PF05899 Cupin_3: Protein of u 27.2 33 0.00071 30.7 1.2 17 830-846 45-61 (74)
101 PRK13307 bifunctional formalde 27.1 68 0.0015 37.7 4.1 66 856-930 175-241 (391)
102 KOG2107 Uncharacterized conser 26.3 43 0.00092 35.3 2.0 55 777-848 80-135 (179)
103 KOG2583 Ubiquinol cytochrome c 26.1 42 0.00091 39.6 2.1 44 462-506 160-206 (429)
104 PTZ00303 phosphatidylinositol 26.0 32 0.0007 43.3 1.3 33 193-226 460-499 (1374)
105 COG3791 Uncharacterized conser 25.8 18 0.0004 35.9 -0.7 15 319-333 67-81 (133)
106 PF12852 Cupin_6: Cupin 25.5 40 0.00086 34.4 1.7 43 801-853 37-79 (186)
107 TIGR01080 rplX_A_E ribosomal p 25.4 38 0.00083 33.5 1.5 43 802-846 13-55 (114)
108 PF05290 Baculo_IE-1: Baculovi 24.9 84 0.0018 32.2 3.7 44 315-358 73-119 (140)
109 TIGR03404 bicupin_oxalic bicup 24.8 67 0.0015 37.3 3.5 53 827-883 108-165 (367)
110 COG5574 PEX10 RING-finger-cont 24.8 38 0.00082 37.9 1.4 47 192-246 214-261 (271)
111 PRK14892 putative transcriptio 24.2 46 0.001 32.1 1.7 29 316-344 16-51 (99)
112 PF14446 Prok-RING_1: Prokaryo 24.0 32 0.00069 30.0 0.5 24 317-343 17-44 (54)
113 COG5219 Uncharacterized conser 23.5 31 0.00066 44.4 0.5 32 208-244 1489-1520(1525)
114 KOG1039 Predicted E3 ubiquitin 22.7 34 0.00074 39.6 0.6 51 192-244 160-218 (344)
115 COG5540 RING-finger-containing 22.4 58 0.0013 37.3 2.3 49 190-244 320-369 (374)
116 PF10272 Tmpp129: Putative tra 22.3 41 0.00088 39.1 1.1 53 192-245 270-349 (358)
117 PF02311 AraC_binding: AraC-li 22.1 59 0.0013 29.8 2.0 45 824-869 36-82 (136)
118 PF03107 C1_2: C1 domain; Int 21.9 44 0.00095 25.3 0.9 26 324-349 3-29 (30)
119 PF08990 Docking: Erythronolid 21.9 54 0.0012 24.9 1.3 17 775-791 3-19 (27)
120 COG3492 Uncharacterized protei 21.8 32 0.00069 33.0 0.1 14 217-230 42-55 (104)
121 TIGR02297 HpaA 4-hydroxyphenyl 21.6 64 0.0014 34.7 2.4 32 823-854 56-87 (287)
122 PRK15457 ethanolamine utilizat 21.6 52 0.0011 36.2 1.7 72 767-852 145-216 (233)
123 PRK12380 hydrogenase nickel in 21.5 47 0.001 32.4 1.2 22 321-342 70-93 (113)
124 cd02336 ZZ_RSC8 Zinc finger, Z 21.3 64 0.0014 27.0 1.8 32 323-354 2-34 (45)
125 smart00647 IBR In Between Ring 21.0 47 0.001 27.8 1.0 26 204-230 37-62 (64)
126 KOG0311 Predicted E3 ubiquitin 20.7 47 0.001 38.6 1.2 59 192-257 42-100 (381)
127 PF13891 zf-C3Hc3H: Potential 20.5 53 0.0011 29.1 1.2 22 32-53 8-29 (65)
128 PRK13503 transcriptional activ 20.1 52 0.0011 35.1 1.4 31 824-854 48-78 (278)
129 KOG2879 Predicted E3 ubiquitin 20.0 1E+02 0.0022 34.9 3.5 51 190-246 236-286 (298)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=1.9e-175 Score=1502.96 Aligned_cols=646 Identities=31% Similarity=0.503 Sum_probs=549.4
Q ss_pred cCCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCcccccccccccccchhhccc--ccCC
Q 002233 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVQVRI--REIP 268 (949)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNCs~Clr~~g~~~t~~~~--~e~~ 268 (949)
-...+||||.+..+..+-+|++|+.+ ||.+|++.||+....++++..|++|+..|||..|....++++|++.. .-.+
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~ 305 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD 305 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence 46789999999888889999999965 99999999999989999999999999999999999999999995443 2255
Q ss_pred ccchhHHHH--HHHHhhhhhhhhhhhhhhhhhhhhhhhcccccc--ccccccCcccccccCCCccccccccccCCCCCcc
Q 002233 269 VLDKLQHLY--CLLSAVLPVVKQIHQIQCSEVELEKKLRGNEID--LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYD 344 (949)
Q Consensus 269 ~~dk~~~~~--yll~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~~~--i~~a~~~~DERvyCDnCkTSIvD~HRSCp~CsYD 344 (949)
..+++.++. |+|..++|+|+.++..|..+.+.||+|||.... ...+..+++|++|||+|.|||.|+||+||+|||.
T Consensus 306 ~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~ 385 (889)
T KOG1356|consen 306 LSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTSKPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYA 385 (889)
T ss_pred HHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCCCccccccCcCCCccccccccchhhccccCCCcccc
Confidence 667777777 999999999999999999999999999998533 3556777799999999999999999999999999
Q ss_pred hhhhhhHHhhhcccCCCCcccc-ccccc--c-cccchhhh--hhhhhhhhccccCCCCccccCCCCccCCCCCCCCCCCc
Q 002233 345 LCLSCCQDLREASTSVGKEEFS-ENDRI--Q-DTENASEQ--VKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYR 418 (949)
Q Consensus 345 LCLsCC~ELR~g~l~~g~~~~~-~~~~~--~-~~~~~~~~--~~~~~~~~~~~~~~~~W~a~~dGsIpCppke~ggCg~~ 418 (949)
+||.||.+||.|.+....+... +..+. . +.....+. ..++.. .. +. ++++|+|.|-|..++||+..
T Consensus 386 ~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~-----~~-~~--~~~ng~~r~l~~~~~g~~~~ 457 (889)
T KOG1356|consen 386 ICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVD-----EP-SS--ANENGSLRDLLLSLAGCLDR 457 (889)
T ss_pred ccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCC-----CC-cc--cccccchhhcccccCccchh
Confidence 9999999999998876653221 11110 0 00000000 001110 01 12 88999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhcCCCccCCCc-cccCCCCccccccccccCCCCCceecCCccccCchhHHHHHHhh
Q 002233 419 SLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETL-LNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHW 497 (949)
Q Consensus 419 ~L~L~~if~~~wi~~L~~~aee~~~~c~~~d~~~~-~~s~~~~~~l~~aA~re~s~dN~ly~P~~~di~~d~l~hFQ~hW 497 (949)
.|.|+||||..|.+.|+.+||.-+...-..-.... ..+....+.++++|.|+.+.|||||||.+.+++.+||.|||+||
T Consensus 458 ~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhW 537 (889)
T KOG1356|consen 458 GLKLKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHW 537 (889)
T ss_pred hhhhhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHH
Confidence 99999999999999999999998865211111111 01112334578999999999999999999899999999999999
Q ss_pred hcCCCEEEeccccCCCCCCCChhhhhhhhhhhcccccccccCceEEEeCCCCCeeecchhhhhccccCCcccCCCCccee
Q 002233 498 VKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEML 577 (949)
Q Consensus 498 ~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~~gr~~~~g~p~mL 577 (949)
++|||||||||++++++++|+||+|||+|++.-..-..-.+.++.++||++ ++.+||.||++|+++++|||+||
T Consensus 538 kqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vL 611 (889)
T KOG1356|consen 538 KQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVL 611 (889)
T ss_pred hcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEE
Confidence 999999999999999999999999999998765433333445566666666 68999999999999999999999
Q ss_pred eecCCCCchhhHHhhhccchHHHhCCCcccccCCCCccccccccCCCCCCCCCCCCcccccccccccccCCCCcceeeee
Q 002233 578 KLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFN 657 (949)
Q Consensus 578 KLKDWPps~~Fee~lP~h~~eFi~~LP~~EYT~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~D 657 (949)
|||||||+++|+++||+||+|||++|||||||| |+|.||||++||.+|++||||||||||||+++++||||||||||||
T Consensus 612 KLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~d 690 (889)
T KOG1356|consen 612 KLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLD 690 (889)
T ss_pred eecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeecee
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeecccccCCCchhhhhhcccccccccccCCCCCccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhcCc
Q 002233 658 MPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGV 737 (949)
Q Consensus 658 mSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (949)
|||||||||||++++....|...|.|+.++ |+ .+.....
T Consensus 691 vSDaVNILvyv~e~~~~~~~~~~~~k~~~~----------------~~----------~de~~~~--------------- 729 (889)
T KOG1356|consen 691 VSDAVNILVYVGEPPGQIEQIAKVLKKIQE----------------GD----------LDEITRS--------------- 729 (889)
T ss_pred hhhhhhheeeeccCCchHHhHHHHHHhhhh----------------cc----------hhhhhhh---------------
Confidence 999999999999998754454444332211 11 0000000
Q ss_pred cccccccccccccccCCCCCCCCCCCCceeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCcccCCCcCcceecCHHHH
Q 002233 738 ETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHK 817 (949)
Q Consensus 738 ~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk 817 (949)
+ .....+.+|||||||||||||||||||+||++||+|. +.+|+||||||+||||.+||
T Consensus 730 -------------~-----~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~~----~~~v~hPIhDQS~YLd~~lr 787 (889)
T KOG1356|consen 730 -------------R-----ISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGHE----VPKVHHPIHDQSWYLDRYLR 787 (889)
T ss_pred -------------h-----ccccccCCcchhhhhhhcchHHHHHHHHHhhHHhcCC----CCcccCCCcccceeccHHHH
Confidence 0 0124578999999999999999999999999999994 34589999999999999999
Q ss_pred HHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHHHHHHHhcCCCchhhhhhhhhhhhh
Q 002233 818 RKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKI 897 (949)
Q Consensus 818 ~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~LeVkKm 897 (949)
+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.|||+||+|||+||++|.+++||||||+|
T Consensus 788 ~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~m 867 (889)
T KOG1356|consen 788 RRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNM 867 (889)
T ss_pred HHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC
Q 002233 898 SLYAASSAIKEVQKLVLD 915 (949)
Q Consensus 898 ~lya~~~Avke~~~l~~~ 915 (949)
++||+..||++|+.+..+
T Consensus 868 i~hAVk~Av~~L~~~~s~ 885 (889)
T KOG1356|consen 868 IYHAVKDAVGTLKEAESS 885 (889)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999987654
No 2
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.79 E-value=2.1e-20 Score=175.72 Aligned_cols=70 Identities=31% Similarity=0.796 Sum_probs=63.3
Q ss_pred cCCCCccccccCCCCCeEEc------ccCC--CccccHhHHhhhcCCCChHH---hhhcCCCCCCcccccccccccccch
Q 002233 191 TGGQICHQCRRNDRERVVWC------VKCD--KRGYCDSCISTWYSDIPLEE---LEKVCPACRGSCNCKACLRADNMIK 259 (949)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C------~~C~--r~~FC~~CL~~rY~e~~~ed---v~~~CP~Crg~CNCs~Clr~~g~~~ 259 (949)
..|++||||||||.+..+.| ++|. ++.||+.||.+||+|+.+|. ..|.||+|||||||++|++++|+.|
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~P 84 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWAP 84 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCCC
Confidence 58999999999999999999 7782 36899999999999976553 4699999999999999999999999
Q ss_pred h
Q 002233 260 V 260 (949)
Q Consensus 260 t 260 (949)
|
T Consensus 85 T 85 (105)
T PF10497_consen 85 T 85 (105)
T ss_pred c
Confidence 9
No 3
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=99.56 E-value=1.1e-15 Score=124.42 Aligned_cols=43 Identities=37% Similarity=0.896 Sum_probs=40.2
Q ss_pred CCCCCCcccCCCCcceecCcCCCCchhHHHHHHhhhhhhhhHH
Q 002233 17 IPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSA 59 (949)
Q Consensus 17 ~p~~~rc~r~dgk~wrc~~~~~~~~~~ce~h~~~~~~~~~~~~ 59 (949)
+||++||+|+|||+|||+++|+++++|||+|++++|+|+++.+
T Consensus 1 d~e~~RC~R~DGK~WrC~~~a~~g~~~Ce~H~~~~r~r~~~~~ 43 (46)
T PF08879_consen 1 DPEPWRCRRNDGKGWRCSRRALPGYSLCEHHLDRGRSRSRKSK 43 (46)
T ss_pred CCccceeeCCCCCccccCCccCCCccHHHHHHHHHhhccCCCC
Confidence 4899999999999999999999999999999999999988643
No 4
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.47 E-value=2.7e-14 Score=131.66 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=62.6
Q ss_pred CceeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCcccCCC--cCcceecCHHHHHHHHHHhCccceEEEeecCceEEe
Q 002233 764 PGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPL--YGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFI 841 (949)
Q Consensus 764 ~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPI--HDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFI 841 (949)
+..+|-+++++|.+++++|++++. . ..+|+ +.+...+.++. ..+.||+.|+|+|++||+|||
T Consensus 30 ~~k~W~~v~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~p~~----l~~~gi~~~~~~Q~~Ge~V~i 93 (114)
T PF02373_consen 30 GSKVWYIVPPEDADKFEKFLRSKE--S----------QNCPQFLDHKNIFVSPEQ----LKKAGIPVYRFVQKPGEFVFI 93 (114)
T ss_dssp SEEEEEEE-GGGHHHHHHHHHHHH--H----------HHSTTGGCTGGEEEGHHH----HHHTTS--EEEEEETT-EEEE
T ss_pred cceEeEEechhhhhhHHHHHhhcc--c----------ccccccccccccccceee----eeccCcccccceECCCCEEEE
Confidence 346999999999999999999762 1 12333 44445555443 778999999999999999999
Q ss_pred cCCCccccccccccceeeccc
Q 002233 842 PAGCPFQVRNLQSTVQLGLDF 862 (949)
Q Consensus 842 PAGCPHQVRNLkSCIKVAlDF 862 (949)
|+|++|||.|+-.||++|.+|
T Consensus 94 ~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 94 PPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp -TT-EEEEEESSSEEEEEEEE
T ss_pred CCCceEEEEeCCceEEEEecC
Confidence 999999999999999999998
No 5
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.93 E-value=2.6e-10 Score=117.37 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=33.1
Q ss_pred cceEEEeecCceEEecCCCccccccc--cc-cceeeccccCCC
Q 002233 827 EPWSFEQHLGEAVFIPAGCPFQVRNL--QS-TVQLGLDFLFPE 866 (949)
Q Consensus 827 epWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 866 (949)
.+|.+++.+||++|||+|-.|||+|| .. ||.|...|..|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 79999999999999999999999999 76 999999998764
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.93 E-value=0.00066 Score=56.88 Aligned_cols=54 Identities=33% Similarity=0.432 Sum_probs=43.3
Q ss_pred HHHhCCCcccccCCCCccccccccCCCCCCCCCCCCcccccccccccccCCCCcceeeeeccccceeeeecc
Q 002233 598 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 669 (949)
Q Consensus 598 eFi~~LP~~EYT~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~DmSDAVNIL~ht~ 669 (949)
..+..||+ .+||+.+++.....|+. +|+.+|.. +|+|.+|+|+.|.||++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~~------~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGMA------GSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeCC------CCccceeEcCCCeEEEEEecC
Confidence 35667777 68999999988888877 66666653 789999999999999987653
No 7
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.82 E-value=0.0094 Score=67.38 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=49.5
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHH-HHHHHhcCCC
Q 002233 823 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVR-LAEEIRCLPN 883 (949)
Q Consensus 823 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r-LteEfR~Lp~ 883 (949)
++.+.+.++-|..||+||+|.|==|||-||-..|.|--.++--=|+..=.+ |-+++-.+.+
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~e 323 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAE 323 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhh
Confidence 345677899999999999999999999999999999999998888776665 3344444443
No 8
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.07 E-value=0.012 Score=47.87 Aligned_cols=30 Identities=40% Similarity=0.893 Sum_probs=28.0
Q ss_pred cccCCCccccccccccCCCC-CcchhhhhhH
Q 002233 322 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQ 351 (949)
Q Consensus 322 vyCDnCkTSIvD~HRSCp~C-sYDLCLsCC~ 351 (949)
|.||.|+++|..+.=.|..| .||||..|-.
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhC
Confidence 57999999999999999999 7999999976
No 9
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=93.50 E-value=0.042 Score=45.32 Aligned_cols=30 Identities=40% Similarity=1.074 Sum_probs=27.7
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhH
Q 002233 322 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQ 351 (949)
Q Consensus 322 vyCDnCk-TSIvD~HRSCp~C-sYDLCLsCC~ 351 (949)
+.||.|+ .+|+.+.=.|..| .||||..|-.
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 5799999 7899999999999 7999999987
No 10
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.38 E-value=0.043 Score=45.62 Aligned_cols=30 Identities=33% Similarity=0.925 Sum_probs=27.7
Q ss_pred ccCCCcccccc-ccccCCCC-CcchhhhhhHH
Q 002233 323 CCNICRIPIID-YHRHCGNC-MYDLCLSCCQD 352 (949)
Q Consensus 323 yCDnCkTSIvD-~HRSCp~C-sYDLCLsCC~E 352 (949)
.||+|...|.. ++=.|..| .||||+.|-..
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 59999999999 88899999 99999999883
No 11
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=93.30 E-value=0.046 Score=44.70 Aligned_cols=32 Identities=38% Similarity=0.879 Sum_probs=29.1
Q ss_pred ccCCCccccccccccCCCCC-cchhhhhhHHhh
Q 002233 323 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 354 (949)
Q Consensus 323 yCDnCkTSIvD~HRSCp~Cs-YDLCLsCC~ELR 354 (949)
.||.|..+|...+=.|..|. ||||..|-.+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 59999999999999999999 999999988544
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.15 E-value=0.071 Score=51.42 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=43.6
Q ss_pred ccCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccccc--ceeec
Q 002233 801 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQST--VQLGL 860 (949)
Q Consensus 801 v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 860 (949)
-.||-|+|.+|...-. =+|.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 59 H~hp~~~~~~~Vl~G~-----~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 59 HTHPLGEQTIYVLEGE-----GTVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccCCCcceEEEEEecE-----EEEEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 4688889999998773 2355555566668999999999999999999999 55544
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.07 E-value=0.068 Score=45.31 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.4
Q ss_pred EEEeecCceEEecCCCcccccccccc
Q 002233 830 SFEQHLGEAVFIPAGCPFQVRNLQST 855 (949)
Q Consensus 830 tf~Q~lGEAVFIPAGCPHQVRNLkSC 855 (949)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998754
No 14
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=90.63 E-value=0.16 Score=57.05 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=47.9
Q ss_pred ceecCHHHHHHH---HHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHH
Q 002233 809 VVYLNGDHKRKL---KEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 869 (949)
Q Consensus 809 ~fYLt~~hk~kL---kEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 869 (949)
+||-+-.-|-+| -+||. |-...|.+||.||||.|==|=|-||--.|-|+..|+|=||.+
T Consensus 242 twf~~~y~rt~~Pswp~E~k--PIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 242 TWFSTIYPRTQLPSWPDEYK--PIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred chhhhccccccCCCCccccC--CceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 344444444442 34554 778999999999999999999999999999999999999975
No 15
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=90.30 E-value=0.16 Score=42.04 Aligned_cols=31 Identities=32% Similarity=0.924 Sum_probs=27.7
Q ss_pred cccCCCcc-ccccccccCCCCC-cchhhhhhHH
Q 002233 322 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 352 (949)
Q Consensus 322 vyCDnCkT-SIvD~HRSCp~Cs-YDLCLsCC~E 352 (949)
|-||.|.+ +|+-..=.|..|. ||||..|-..
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 56999985 8999999999998 9999999875
No 16
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=89.98 E-value=0.17 Score=41.59 Aligned_cols=35 Identities=40% Similarity=0.843 Sum_probs=26.6
Q ss_pred cccccCCCcc-ccccccccCCCCC-cchhhhhhHHhh
Q 002233 320 EQMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDLR 354 (949)
Q Consensus 320 ERvyCDnCkT-SIvD~HRSCp~Cs-YDLCLsCC~ELR 354 (949)
..+.||.|++ +|.-..=.|..|. ||||..|-.+-+
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~ 39 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGR 39 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcC
Confidence 3578999999 9999999999998 999999987633
No 17
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.31 E-value=0.25 Score=48.09 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=30.6
Q ss_pred ceEEEeecCceEEecCCCccccccccccceeeccccCCCC
Q 002233 828 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPES 867 (949)
Q Consensus 828 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 867 (949)
.=.|+=+.||+|+||||.||.++|.-+.-=+.++=-+|+.
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~ 113 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPY 113 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCc
Confidence 5677778999999999999999999994444444445544
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=88.98 E-value=0.23 Score=41.66 Aligned_cols=31 Identities=39% Similarity=0.937 Sum_probs=28.1
Q ss_pred ccCCCcc-ccccccccCCCCC---cchhhhhhHHh
Q 002233 323 CCNICRI-PIIDYHRHCGNCM---YDLCLSCCQDL 353 (949)
Q Consensus 323 yCDnCkT-SIvD~HRSCp~Cs---YDLCLsCC~EL 353 (949)
-||+|.. +|+.+.=.|..|. ||||..|-..-
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 3999998 9999999999998 99999998754
No 19
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=88.97 E-value=0.23 Score=40.39 Aligned_cols=36 Identities=36% Similarity=0.824 Sum_probs=30.8
Q ss_pred ccccCCCccccccccccCCCC-CcchhhhhhHHhhhc
Q 002233 321 QMCCNICRIPIIDYHRHCGNC-MYDLCLSCCQDLREA 356 (949)
Q Consensus 321 RvyCDnCkTSIvD~HRSCp~C-sYDLCLsCC~ELR~g 356 (949)
.+.||.|...|....=.|..| .||||..|-.+-+.+
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 367999999999998899999 899999998855444
No 20
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=87.70 E-value=0.3 Score=40.80 Aligned_cols=33 Identities=36% Similarity=0.834 Sum_probs=28.2
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhhhhhHHhh
Q 002233 322 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLR 354 (949)
Q Consensus 322 vyCDnCkT-SIvD~HRSCp~C-sYDLCLsCC~ELR 354 (949)
+.||+|+. +|.-++=.|..| .||||+.|-..-+
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 46999998 999998899888 4999999988443
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=86.83 E-value=0.34 Score=40.50 Aligned_cols=31 Identities=29% Similarity=0.745 Sum_probs=27.2
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhHH
Q 002233 322 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 352 (949)
Q Consensus 322 vyCDnCk-TSIvD~HRSCp~C-sYDLCLsCC~E 352 (949)
|.||.|+ .+|.-..=.|..| .||||+.|-..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 5799999 8999888888888 69999999873
No 22
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=85.37 E-value=0.45 Score=38.59 Aligned_cols=29 Identities=38% Similarity=1.051 Sum_probs=25.0
Q ss_pred ccCCCccccccccccCCCC-CcchhhhhhHH
Q 002233 323 CCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 352 (949)
Q Consensus 323 yCDnCkTSIvD~HRSCp~C-sYDLCLsCC~E 352 (949)
-||.|.. |.-..+.|..| .||||..|-..
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 3999988 66799999999 89999999764
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.03 E-value=0.45 Score=51.99 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=24.9
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 002233 824 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 824 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
|.+..=..+=..||+|||||||||+..|.-+
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecCC
Confidence 4555556666789999999999999999743
No 24
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=81.69 E-value=1.1 Score=46.03 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=44.5
Q ss_pred cCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCC
Q 002233 802 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 866 (949)
Q Consensus 802 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 866 (949)
+||- ++.+|+-.-. -++-|..=++.-..||.++||||.||..+|..+.-=+++-+++|-
T Consensus 125 ~h~~-~E~~~Vl~G~-----~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 125 KHQG-EEIGTVLEGE-----IVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred ccCC-cEEEEEEEeE-----EEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 4443 5666665542 235667778889999999999999999999987766777777774
No 25
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=79.01 E-value=1.2 Score=37.57 Aligned_cols=34 Identities=44% Similarity=0.955 Sum_probs=27.7
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhhhhhHHhhh
Q 002233 322 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLRE 355 (949)
Q Consensus 322 vyCDnCkT-SIvD~HRSCp~C-sYDLCLsCC~ELR~ 355 (949)
|-||.|+. +|.-+.=.|..| .||||..|-..-+.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~ 36 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRT 36 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCc
Confidence 46999995 799988888887 49999999875443
No 26
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=78.78 E-value=1.1 Score=55.83 Aligned_cols=36 Identities=22% Similarity=0.760 Sum_probs=32.0
Q ss_pred cccccccCCCccccccccccCCCCCcchhhhhhHHh
Q 002233 318 ADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDL 353 (949)
Q Consensus 318 ~DERvyCDnCkTSIvD~HRSCp~CsYDLCLsCC~EL 353 (949)
...|-.|+.|-|++|++|-.|++|++-+||.|-+.-
T Consensus 226 ~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~ 261 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKW 261 (889)
T ss_pred cCcchhhhhhcccccceeEEccccCCeeeecchhhc
Confidence 345788999999999999999999999999987644
No 27
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=77.88 E-value=1.5 Score=43.19 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=27.0
Q ss_pred ceEEEeecCceEEecCCCccccccccccceeeccccCCC
Q 002233 828 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 866 (949)
Q Consensus 828 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 866 (949)
.=++.=..||+++||||-||+.+|...|.=++. ++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 334556789999999999999999855544333 5553
No 28
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=77.63 E-value=1.8 Score=32.91 Aligned_cols=42 Identities=31% Similarity=0.817 Sum_probs=28.3
Q ss_pred ccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
|--|...- ...+.-..|+ ..||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~-~~~~~~~~C~-H~~c~~C~~~~~~~-----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF-REPVVLLPCG-HVFCRSCIDKWLKS-----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh-hCceEecCCC-ChhcHHHHHHHHHh-----CcCCCCCCCC
Confidence 44555443 2344445588 58999999998753 3457999985
No 29
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=76.04 E-value=1.7 Score=36.79 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=25.0
Q ss_pred cccCCCccccccccccCCCC-CcchhhhhhHH
Q 002233 322 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 352 (949)
Q Consensus 322 vyCDnCkTSIvD~HRSCp~C-sYDLCLsCC~E 352 (949)
+.||.|...|.-+.=.|-.| .||||..|-..
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 35999998888777677777 49999999863
No 30
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=75.83 E-value=1.3 Score=33.17 Aligned_cols=27 Identities=33% Similarity=0.894 Sum_probs=12.8
Q ss_pred ccCCCcccccc-ccccCCCCCcchhhhh
Q 002233 323 CCNICRIPIID-YHRHCGNCMYDLCLSC 349 (949)
Q Consensus 323 yCDnCkTSIvD-~HRSCp~CsYDLCLsC 349 (949)
.|+.|+++|.. +.=+|+.|.|+|.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 59999999998 8888999999999988
No 31
>PHA02926 zinc finger-like protein; Provisional
Probab=75.74 E-value=1.1 Score=48.44 Aligned_cols=33 Identities=27% Similarity=0.761 Sum_probs=24.7
Q ss_pred cCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002233 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (949)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (949)
.|+ ..||..||..|-..-....+...||.||..
T Consensus 196 ~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 196 SCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred CCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 477 589999999998742223456789999973
No 32
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=74.98 E-value=1.5 Score=48.76 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=13.7
Q ss_pred ecCceEEecCCCccc
Q 002233 834 HLGEAVFIPAGCPFQ 848 (949)
Q Consensus 834 ~lGEAVFIPAGCPHQ 848 (949)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 469999999999996
No 33
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=73.69 E-value=2 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.5
Q ss_pred ecCceEEecCCCcccccccccc
Q 002233 834 HLGEAVFIPAGCPFQVRNLQST 855 (949)
Q Consensus 834 ~lGEAVFIPAGCPHQVRNLkSC 855 (949)
..||.||||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5699999999999999998654
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=73.43 E-value=1.5 Score=43.45 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.6
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 002233 830 SFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 830 tf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
+.+-..||...||+|.|||--||.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 35
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.70 E-value=1.4 Score=35.15 Aligned_cols=30 Identities=37% Similarity=0.921 Sum_probs=21.8
Q ss_pred CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002233 206 RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (949)
Q Consensus 206 ~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (949)
.++... |+ ..||..||..|... ...||.||
T Consensus 15 ~~~~l~-C~-H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 15 KVVKLP-CG-HVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp CEEEET-TS-EEEEHHHHHHHHHH------SSB-TTTH
T ss_pred eEEEcc-CC-CeeCHHHHHHHHHh------CCcCCccC
Confidence 344444 88 69999999999854 24999997
No 36
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=72.37 E-value=1.9 Score=50.06 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.0
Q ss_pred EeecCceEEecCCCccc
Q 002233 832 EQHLGEAVFIPAGCPFQ 848 (949)
Q Consensus 832 ~Q~lGEAVFIPAGCPHQ 848 (949)
.=++|||||||||.||=
T Consensus 240 ~l~pGeaifipAg~~HA 256 (389)
T PRK15131 240 KLNPGEAMFLFAETPHA 256 (389)
T ss_pred EeCCCCEEEeCCCCCeE
Confidence 34689999999999997
No 37
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=68.49 E-value=3.6 Score=43.51 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=30.8
Q ss_pred ceEEEeecCceEEecCCCccccccccccceeeccccCCCCHH
Q 002233 828 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 869 (949)
Q Consensus 828 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 869 (949)
.+.+.=..||+|+||+|..|++.|.-+.-=+.+- |.|...+
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~~ 159 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADAG 159 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCcc
Confidence 7888999999999999999999998754433333 4444443
No 38
>PHA02929 N1R/p28-like protein; Provisional
Probab=68.26 E-value=3.4 Score=45.21 Aligned_cols=47 Identities=23% Similarity=0.696 Sum_probs=31.7
Q ss_pred CCCCccccccCCCC------CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002233 192 GGQICHQCRRNDRE------RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (949)
Q Consensus 192 ~~~~CHQCrqkt~~------~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (949)
....|-=|...-.. ....=..|+ ..||..||..|... .-.||.||..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~------~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKE------KNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhc------CCCCCCCCCE
Confidence 35678888764221 122334688 58999999999764 3489999973
No 39
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.50 E-value=8.7 Score=40.58 Aligned_cols=47 Identities=30% Similarity=0.671 Sum_probs=35.9
Q ss_pred cCCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
..-..|--|.-.....+..=++|| ..||..||++--. ...+||.|+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~alk------~~~~CP~C~k 175 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDALK------NTNKCPTCRK 175 (187)
T ss_pred ccccCCCceecchhhccccccccc-hhHHHHHHHHHHH------hCCCCCCccc
Confidence 355789999988777666668899 5999999976433 2469999985
No 40
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=4.1 Score=45.62 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=37.0
Q ss_pred cCCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCcc
Q 002233 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSC 246 (949)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~C 246 (949)
.+...|-=|--... --.|+-|| ..||-.||.-|-.+-++ ||.||--|
T Consensus 237 ~a~~kC~LCLe~~~--~pSaTpCG-HiFCWsCI~~w~~ek~e------CPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--NPSATPCG-HIFCWSCILEWCSEKAE------CPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCC--CCCcCcCc-chHHHHHHHHHHccccC------CCcccccC
Confidence 46678999986664 34678899 58999999999998542 99999754
No 41
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=65.79 E-value=3.1 Score=47.12 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=17.2
Q ss_pred EEeecCceEEecCCCcccccc
Q 002233 831 FEQHLGEAVFIPAGCPFQVRN 851 (949)
Q Consensus 831 f~Q~lGEAVFIPAGCPHQVRN 851 (949)
+.=++|||+|||||.||=.-.
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EecCCCCEEEecCCCceeecc
Confidence 455789999999999997433
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.55 E-value=4.2 Score=29.66 Aligned_cols=27 Identities=33% Similarity=1.083 Sum_probs=20.0
Q ss_pred cccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002233 210 CVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (949)
Q Consensus 210 C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (949)
-..|+ ..||..|+..|+. .....||.|
T Consensus 13 ~~~C~-H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 13 VLPCG-HTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred EecCC-ChHHHHHHHHHHH-----hCcCCCCCC
Confidence 34588 4799999999876 233579887
No 43
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=63.59 E-value=3.7 Score=33.75 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=30.9
Q ss_pred CCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 194 QICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 194 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
..|.-|...... +.-..|+-..||..|+.+++. ....||.||.
T Consensus 3 ~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~ 45 (50)
T PF13920_consen 3 EECPICFENPRD--VVLLPCGHLCFCEECAERLLK------RKKKCPICRQ 45 (50)
T ss_dssp SB-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHH------TTSBBTTTTB
T ss_pred CCCccCCccCCc--eEEeCCCChHHHHHHhHHhcc------cCCCCCcCCh
Confidence 467788877654 334468854499999999986 3469999986
No 44
>PLN02288 mannose-6-phosphate isomerase
Probab=62.36 E-value=3.9 Score=47.71 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.3
Q ss_pred eecCceEEecCCCccc
Q 002233 833 QHLGEAVFIPAGCPFQ 848 (949)
Q Consensus 833 Q~lGEAVFIPAGCPHQ 848 (949)
=.+|||||||||.||=
T Consensus 255 L~PGeaifl~ag~~HA 270 (394)
T PLN02288 255 LNPGEALYLGANEPHA 270 (394)
T ss_pred cCCCCEEEecCCCCce
Confidence 3589999999999996
No 45
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=62.01 E-value=7.3 Score=41.55 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=32.5
Q ss_pred CCCCccccccCCCCCeEEcccCCCccccHhHHhhhcC--CCCh--------HHhhhcCCCCCCc
Q 002233 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYS--DIPL--------EELEKVCPACRGS 245 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~--e~~~--------edv~~~CP~Crg~ 245 (949)
+...|.=|...-...++ +.|+ ..||..||..|-. ..+. ..-...||.||.-
T Consensus 17 ~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 17 GDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 34567777665544444 5799 5999999999842 1111 1123689999973
No 46
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=60.05 E-value=7.7 Score=38.30 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=26.5
Q ss_pred EEEee----cCceEEecCCCccccccc--cccceeecccc-CCCC
Q 002233 830 SFEQH----LGEAVFIPAGCPFQVRNL--QSTVQLGLDFL-FPES 867 (949)
Q Consensus 830 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEn 867 (949)
.+.|. .||.++||+|.||=+.|. .+.+.++.=++ +|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 45555 899999999999999999 56666655444 4444
No 47
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=59.46 E-value=4.8 Score=47.59 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=25.4
Q ss_pred ccceEEEeecCceEEecCCCccccccccccc
Q 002233 826 VEPWSFEQHLGEAVFIPAGCPFQVRNLQSTV 856 (949)
Q Consensus 826 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 856 (949)
|..=++.=..||.|+||+|.||+.+|.-+--
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~ 442 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKIP 442 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCCC
Confidence 4455667789999999999999999987643
No 48
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=58.95 E-value=7.1 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.856 Sum_probs=22.1
Q ss_pred eEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002233 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (949)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (949)
.+.-..|+ ..||..|+.++.... ..||.|
T Consensus 11 ~~~~~~CG-H~fC~~C~~~~~~~~------~~CP~C 39 (39)
T PF13923_consen 11 PVVVTPCG-HSFCKECIEKYLEKN------PKCPVC 39 (39)
T ss_dssp EEEECTTS-EEEEHHHHHHHHHCT------SB-TTT
T ss_pred cCEECCCC-CchhHHHHHHHHHCc------CCCcCC
Confidence 55677899 589999999986542 699987
No 49
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=58.65 E-value=5 Score=44.71 Aligned_cols=33 Identities=30% Similarity=0.692 Sum_probs=28.0
Q ss_pred ccccCCCcc-ccccccccCCCCC-cchhhhhhHHh
Q 002233 321 QMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDL 353 (949)
Q Consensus 321 RvyCDnCkT-SIvD~HRSCp~Cs-YDLCLsCC~EL 353 (949)
-+-||+|.+ .|+-.-=.|.-|. ||||-.|-..-
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 377999999 9999888888774 99999997653
No 50
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.69 E-value=11 Score=44.31 Aligned_cols=48 Identities=27% Similarity=0.599 Sum_probs=35.5
Q ss_pred CCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCcccc
Q 002233 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNC 248 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNC 248 (949)
....|.-|..--...+ -+.|+ ..||..||..+.... ..||.|+..+.-
T Consensus 25 ~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~------~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQ------PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCC------CCCCCCCCcccc
Confidence 5679999986544433 26798 589999999987652 379999987653
No 51
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=57.56 E-value=5.2 Score=29.35 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.1
Q ss_pred ccccCCCccccccccccCCCCCcch
Q 002233 321 QMCCNICRIPIIDYHRHCGNCMYDL 345 (949)
Q Consensus 321 RvyCDnCkTSIvD~HRSCp~CsYDL 345 (949)
.++|.+|.+.|-+=.|-||+|...|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCCC
Confidence 3789999999999999999998765
No 52
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.06 E-value=6.5 Score=42.86 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=35.1
Q ss_pred CCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
+..-|-=|--.-.+.++.| |+ ..||-+||.+|-.- -.....||+|.+
T Consensus 46 ~~FdCNICLd~akdPVvTl--CG-HLFCWpClyqWl~~---~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTL--CG-HLFCWPCLYQWLQT---RPNSKECPVCKA 92 (230)
T ss_pred CceeeeeeccccCCCEEee--cc-cceehHHHHHHHhh---cCCCeeCCcccc
Confidence 4567888888778878776 88 58999999999431 223457899976
No 53
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=57.02 E-value=5.3 Score=32.33 Aligned_cols=28 Identities=25% Similarity=0.850 Sum_probs=19.0
Q ss_pred cCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002233 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (949)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (949)
.|+ -.||..||.++..+.. ...+.||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCc-CHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 588 5899999999987632 223889987
No 54
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=55.88 E-value=7.8 Score=32.24 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=26.2
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhHH
Q 002233 322 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 352 (949)
Q Consensus 322 vyCDnCk-TSIvD~HRSCp~C-sYDLCLsCC~E 352 (949)
+-||.|. ++|+-.-=.|..| .||||-.|-.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 4699999 5999998889876 69999999774
No 55
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=53.92 E-value=8.3 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.631 Sum_probs=23.8
Q ss_pred ccccccCCCCCeEEcccCCCccccHhHHhhhcCC
Q 002233 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSD 229 (949)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e 229 (949)
|+.|++++.-....|..|+ +.||. .-||++
T Consensus 1 C~~C~~~~~l~~f~C~~C~-~~FC~---~HR~~e 30 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG-NLFCG---EHRLPE 30 (39)
T ss_pred CcccCCcccccCeECCccC-Ccccc---ccCCcc
Confidence 8999999976578999999 58875 566665
No 56
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=53.79 E-value=6.5 Score=28.35 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.4
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002233 323 CCNICRIPIIDYHRHCGNCMYDL 345 (949)
Q Consensus 323 yCDnCkTSIvD~HRSCp~CsYDL 345 (949)
||-+|...|-|=.+-|++|...|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 79999999999999999998765
No 57
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=52.52 E-value=12 Score=30.20 Aligned_cols=42 Identities=26% Similarity=0.674 Sum_probs=27.9
Q ss_pred ccccccCCC-CCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 196 CHQCRRNDR-ERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 196 CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
|-.|.+.-. ....+=++|+ -.||..||.+.. .....||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhc------CCCCCCcCCCC
Confidence 455665552 2233345678 589999999888 33458999973
No 58
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=51.89 E-value=8.3 Score=46.08 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.3
Q ss_pred CccceEEEeecCceEEecCCCccccccccc
Q 002233 825 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 825 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
.|..=++.=..||.|+||+|.||+.+|.-.
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 444455666899999999999999999864
No 59
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=50.97 E-value=6.9 Score=39.96 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=38.5
Q ss_pred cCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 002233 802 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 846 (949)
Q Consensus 802 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCP 846 (949)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 348999999999999999999999999987 6799999988864
No 60
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=50.83 E-value=6.9 Score=30.49 Aligned_cols=29 Identities=24% Similarity=0.920 Sum_probs=21.8
Q ss_pred EcccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002233 209 WCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (949)
Q Consensus 209 ~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (949)
.=..|+ -.||..||.+|+.. .....||.|
T Consensus 13 ~~~~C~-H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 13 ILLPCG-HSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp EETTTS-EEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred EEecCC-CcchHHHHHHHHHh----cCCccCCcC
Confidence 445688 58999999999873 334579987
No 61
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=50.46 E-value=11 Score=42.31 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.2
Q ss_pred eEEEeecCceEEecCCCccccccccccceeeccccCCCC
Q 002233 829 WSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPES 867 (949)
Q Consensus 829 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 867 (949)
..|+=.+||..+||.|++|++.....|+.+++-|..|=.
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~ 214 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTW 214 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCch
Confidence 357778999999999999999999999999999998844
No 62
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.06 E-value=4 Score=50.58 Aligned_cols=44 Identities=25% Similarity=0.724 Sum_probs=31.4
Q ss_pred CCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002233 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (949)
+..+|--|...-.+ +.=++|+ ..||..|++.||.-- .-+||.|-
T Consensus 642 ~~LkCs~Cn~R~Kd--~vI~kC~-H~FC~~Cvq~r~etR-----qRKCP~Cn 685 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD--AVITKCG-HVFCEECVQTRYETR-----QRKCPKCN 685 (698)
T ss_pred hceeCCCccCchhh--HHHHhcc-hHHHHHHHHHHHHHh-----cCCCCCCC
Confidence 66789999833332 2334788 589999999999742 35899863
No 64
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=48.19 E-value=10 Score=39.27 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=24.4
Q ss_pred cceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc
Q 002233 808 EVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 853 (949)
Q Consensus 808 Q~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 853 (949)
.+.||...+ ++|.-+|=.|.=..+.-..||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 456777443 37999999999999999999999999999965
No 65
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.01 E-value=14 Score=36.50 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=36.3
Q ss_pred cCCCcCcceecCHHH-HHHHHHHhCccceEEEeecCceEEecCCCcccccccc--ccceee
Q 002233 802 THPLYGEVVYLNGDH-KRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLG 859 (949)
Q Consensus 802 ~hPIHDQ~fYLt~~h-k~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVA 859 (949)
.||-.++-+|+-.-. .-.+-++.|=+-+++.-..||+++||+|-+|+..|.- .++-++
T Consensus 47 ~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~ 107 (146)
T smart00835 47 YHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA 107 (146)
T ss_pred eCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE
Confidence 355445666654421 1111122222557888899999999999999999974 344443
No 66
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=46.00 E-value=18 Score=39.10 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=40.1
Q ss_pred ceeeccccCCCCHHHHHHHHHHHhcCCCchhhhhhhhhhhhhHHHHH-HHHHHHHHHhc
Q 002233 856 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAA-SSAIKEVQKLV 913 (949)
Q Consensus 856 IKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~LeVkKm~lya~-~~Avke~~~l~ 913 (949)
+.||+||.+.+ ++++|++++... .+.++|+.-.+|+. ..+|++|++.+
T Consensus 6 livALD~~~~~---~A~~l~~~l~~~-------v~~iKVG~~L~~~~G~~~i~~lk~~~ 54 (218)
T PRK13305 6 LQLALDHTSLE---AAQRDVTLLKDH-------VDIVEAGTILCLNEGLGAVKALREQC 54 (218)
T ss_pred EEEEeCCCCHH---HHHHHHHHcccc-------CCEEEECHHHHHHhCHHHHHHHHHhC
Confidence 78999999887 899999987633 47899999999987 77899998864
No 67
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=44.45 E-value=15 Score=42.45 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=47.3
Q ss_pred cCCCcCcceecCHH-HHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHHHHHHHhc
Q 002233 802 THPLYGEVVYLNGD-HKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRC 880 (949)
Q Consensus 802 ~hPIHDQ~fYLt~~-hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~ 880 (949)
.||--+..+|+-.- -+..+-..-| ...++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=+..
T Consensus 262 ~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~ 339 (367)
T TIGR03404 262 WHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLAL 339 (367)
T ss_pred eCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhh
Confidence 46655665555443 2111111111 356677789999999999999999998644334444333333222 26676777
Q ss_pred CCC
Q 002233 881 LPN 883 (949)
Q Consensus 881 Lp~ 883 (949)
+|.
T Consensus 340 ~p~ 342 (367)
T TIGR03404 340 TPP 342 (367)
T ss_pred CCH
Confidence 775
No 68
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=44.06 E-value=16 Score=40.16 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccc
Q 002233 803 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 803 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
|+-.++-+|+-.--- +.-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l-----~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEV-----NVTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 333455666654421 12345667778889999999999999999873
No 69
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=43.72 E-value=37 Score=39.55 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=29.6
Q ss_pred HHHHHhhh-cCCCEEEeccccCCCCC-CCChh-hhhhhhhh
Q 002233 491 GNFRKHWV-KGEPVIVKQVCDSSSMS-IWDPK-DIWRGIRE 528 (949)
Q Consensus 491 ~hFQ~hW~-kGePVIVr~Vl~~~s~l-sW~P~-~mwra~~e 528 (949)
.+|=+-|. +..|||+|+.+..-.++ .|.+- ++..++..
T Consensus 34 l~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 34 LDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred HHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 57777776 88999999999876676 88877 77666543
No 70
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=29 Score=35.70 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=33.8
Q ss_pred cCCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002233 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (949)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (949)
..-..|.-|...=... ....|+ ..||..||...-. ....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p--~~l~C~-H~~c~~C~~~~~~------~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP--VLLPCG-HNFCRACLTRSWE------GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC--cccccc-chHhHHHHHHhcC------CCcCCcccC
Confidence 3667888888776654 444577 5899999988776 458999999
No 71
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=42.95 E-value=25 Score=37.59 Aligned_cols=64 Identities=27% Similarity=0.313 Sum_probs=49.2
Q ss_pred ceeeccccCCCCHHHHHHHHHHHhcCCCchhhhhhhhhhhhhHHHHH-HHHHHHHHHhccCCCCCcccCCCCCch
Q 002233 856 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAA-SSAIKEVQKLVLDPKLGAELGFEDPNL 929 (949)
Q Consensus 856 IKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~LeVkKm~lya~-~~Avke~~~l~~~p~~~~~~~~~d~~l 929 (949)
|.||+||.+.| +.++|++++... .+..+|+.-.+|+. -..|++|++++.+=+.=+++.+.|..-
T Consensus 6 l~vALD~~~~~---~a~~l~~~l~~~-------v~~~kvG~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~ 70 (216)
T PRK13306 6 LQIALDNQDLE---SAIEDAKKVAEE-------VDIIEVGTILLLAEGMKAVRVLRALYPDKIIVADTKIADAGK 70 (216)
T ss_pred EEEEecCCCHH---HHHHHHHHcccc-------CCEEEEChHHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcH
Confidence 78999999988 888899887643 47799999999988 677899998754434456666677663
No 72
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=42.57 E-value=9.8 Score=44.78 Aligned_cols=32 Identities=31% Similarity=0.906 Sum_probs=28.4
Q ss_pred cccccCCCcccccccc-ccCCCCC-cchhhhhhH
Q 002233 320 EQMCCNICRIPIIDYH-RHCGNCM-YDLCLSCCQ 351 (949)
Q Consensus 320 ERvyCDnCkTSIvD~H-RSCp~Cs-YDLCLsCC~ 351 (949)
+...||+|..-|-+.- -.|-.|. |||||-|..
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 4567999999999875 7999999 999999986
No 73
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=42.24 E-value=3.8 Score=33.46 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=29.7
Q ss_pred CccccccCC-CCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002233 195 ICHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (949)
Q Consensus 195 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (949)
+|+-|++.. .+.++.|..|++ .|=..|+.............|.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~-~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNR-WYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSC-EEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCCh-hhCcccCCCChhhccCCCCcEECcCCc
Confidence 477888855 568999999994 444555543322111112279999885
No 74
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=39.77 E-value=24 Score=31.69 Aligned_cols=42 Identities=29% Similarity=0.690 Sum_probs=26.1
Q ss_pred CccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002233 195 ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (949)
Q Consensus 195 ~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (949)
.|--|+.....-.+.=..|+ -.|-..||.+|..... .||.||
T Consensus 32 ~~~~~~~~~~~~~i~~~~C~-H~FH~~Ci~~Wl~~~~------~CP~CR 73 (73)
T PF12678_consen 32 PCPECQAPQDECPIVWGPCG-HIFHFHCISQWLKQNN------TCPLCR 73 (73)
T ss_dssp TTCCHHHCTTTS-EEEETTS-EEEEHHHHHHHHTTSS------B-TTSS
T ss_pred hhhhhcCCccccceEecccC-CCEEHHHHHHHHhcCC------cCCCCC
Confidence 34444444332233334587 6899999999986532 999997
No 75
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=39.48 E-value=11 Score=43.66 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=13.0
Q ss_pred eecCceEEecCCCccc
Q 002233 833 QHLGEAVFIPAGCPFQ 848 (949)
Q Consensus 833 Q~lGEAVFIPAGCPHQ 848 (949)
=.+|||+|+|||.||-
T Consensus 254 L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 254 LQPGEAIFLPAGEPHA 269 (373)
T ss_dssp E-TT-EEEEHTTHHEE
T ss_pred ecCCceEEecCCCccc
Confidence 3589999999999998
No 76
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=39.17 E-value=11 Score=35.25 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=45.8
Q ss_pred eccCCChhHHHHHHHHH-HHHhCCCCCCCCCcccCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccc
Q 002233 770 VFRRQDVPKLIEYLREH-WTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQ 848 (949)
Q Consensus 770 IFrreDv~KLreyL~kh-~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQ 848 (949)
-|.|...++|.+|.++. .+-+....-.. ..+..||-. ||+++.+++|.+.+|.++ ||+||+=||-.+.
T Consensus 22 ~~srk~id~l~~~ak~~ga~gL~~ikv~~-~~~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~ 90 (95)
T PF02938_consen 22 KLSRKQIDKLEEFAKKFGAKGLAWIKVEE-GELKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEI 90 (95)
T ss_dssp TTTHCCCCCCCCHHHHCCHCHCCCEEEST-CEEECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCceeeeEcC-CcccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHH
Confidence 35667777777777532 11111110001 235566644 599999999999999975 9999999999888
Q ss_pred ccc
Q 002233 849 VRN 851 (949)
Q Consensus 849 VRN 851 (949)
|++
T Consensus 91 v~~ 93 (95)
T PF02938_consen 91 VNK 93 (95)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 77
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=38.49 E-value=8.9 Score=43.60 Aligned_cols=30 Identities=33% Similarity=0.992 Sum_probs=26.4
Q ss_pred cccCCCccccccc-cccCCCC-CcchhhhhhH
Q 002233 322 MCCNICRIPIIDY-HRHCGNC-MYDLCLSCCQ 351 (949)
Q Consensus 322 vyCDnCkTSIvD~-HRSCp~C-sYDLCLsCC~ 351 (949)
..||.|..-|.|. |-+|-.| -||||+-|.-
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eeehHHHHhhhcceeeeeecccccceehhhhh
Confidence 5699999999986 5689999 9999999975
No 78
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=38.25 E-value=26 Score=33.05 Aligned_cols=48 Identities=27% Similarity=0.743 Sum_probs=35.4
Q ss_pred CCCCccccccCCCC-CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 192 GGQICHQCRRNDRE-RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 192 ~~~~CHQCrqkt~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
....|..|+-...+ .++.++ |+ ..|=+.||.+|-.. +..+-.||-||.
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g~-C~-H~FH~hCI~kWl~~---~~~~~~CPmCR~ 79 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWGK-CS-HNFHMHCILKWLST---QSSKGQCPMCRQ 79 (85)
T ss_pred cccCCCCccCCCCCCceeecc-Cc-cHHHHHHHHHHHcc---ccCCCCCCCcCC
Confidence 44567888776543 566665 88 58999999999874 233679999995
No 79
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=38.05 E-value=14 Score=36.77 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=35.9
Q ss_pred CCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 002233 803 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 845 (949)
Q Consensus 803 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGC 845 (949)
-|.|...-.+...+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 18 a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 18 APLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred CCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 37788888888888899999999999977 589999999985
No 80
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=38.00 E-value=17 Score=40.96 Aligned_cols=43 Identities=28% Similarity=0.774 Sum_probs=31.4
Q ss_pred CCCCccccccCCCCCeEEc-ccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 192 GGQICHQCRRNDRERVVWC-VKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C-~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
....||-|.-- ..+.| +.|+ .-||.-||+++.++-. .||+||-
T Consensus 24 s~lrC~IC~~~---i~ip~~TtCg-HtFCslCIR~hL~~qp------~CP~Cr~ 67 (391)
T COG5432 24 SMLRCRICDCR---ISIPCETTCG-HTFCSLCIRRHLGTQP------FCPVCRE 67 (391)
T ss_pred hHHHhhhhhhe---eecceecccc-cchhHHHHHHHhcCCC------CCccccc
Confidence 44578887532 24566 3588 5899999999998765 7999985
No 81
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.24 E-value=13 Score=41.98 Aligned_cols=48 Identities=23% Similarity=0.680 Sum_probs=32.6
Q ss_pred EEcccCC-CccccHhHHhhhcCCCChHHh--------hhcCCCCCCcccccccccccccchh
Q 002233 208 VWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACRGSCNCKACLRADNMIKV 260 (949)
Q Consensus 208 v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~Crg~CNCs~Clr~~g~~~t 260 (949)
..|.+|= |-..|..||.+||-.- ++++ +-.||.||. ++|.+.-..+.+
T Consensus 318 a~c~nc~crp~wc~~cla~~f~~r-q~~v~r~~~~~~~~~cp~cr~----~fci~dv~~v~~ 374 (381)
T KOG3899|consen 318 APCENCICRPLWCRSCLAQIFIGR-QDNVYRYEYHRGSAQCPTCRK----NFCIRDVHCVDF 374 (381)
T ss_pred CcccccccccHHHHHHHHHHHhhc-ccchhHHHHHhcCCCCcchhh----ceEEeeeeEEEe
Confidence 4788765 4689999999998753 2322 368888887 466665544433
No 82
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=33 Score=40.49 Aligned_cols=24 Identities=29% Similarity=0.811 Sum_probs=21.6
Q ss_pred CCeEEcccCCCccccHhHHhhhcCC
Q 002233 205 ERVVWCVKCDKRGYCDSCISTWYSD 229 (949)
Q Consensus 205 ~~~v~C~~C~r~~FC~~CL~~rY~e 229 (949)
..++.|++|+ -.||.-|...|.|-
T Consensus 291 ~~l~~CskCn-FaFCtlCk~t~HG~ 314 (445)
T KOG1814|consen 291 RALAICSKCN-FAFCTLCKLTWHGV 314 (445)
T ss_pred hhhhhhccCc-cHHHHHHHHhhcCC
Confidence 4689999999 69999999999993
No 83
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.02 E-value=33 Score=39.12 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=29.9
Q ss_pred CCccccccCCC---C--CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 194 QICHQCRRNDR---E--RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 194 ~~CHQCrqkt~---~--~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
.+|--|..... . .++. .|+ ..||..||.+-+..-+ ..||.|+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CG-H~~C~sCv~~l~~~~~-----~~CP~C~~ 51 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCG-HTLCESCVDLLFVRGS-----GSCPECDT 51 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCC-CcccHHHHHHHhcCCC-----CCCCCCCC
Confidence 57999988542 2 1333 688 5899999999765322 38998864
No 84
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.81 E-value=24 Score=26.36 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=20.3
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002233 323 CCNICRIPIIDYHRHCGNCMYDL 345 (949)
Q Consensus 323 yCDnCkTSIvD~HRSCp~CsYDL 345 (949)
.|..|..-|-.--+.||.|.|+.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48889999999999999999974
No 85
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=33.37 E-value=18 Score=41.69 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred eccCCChhHHHHHHHHHHHHhCCCC--CCCCC-cccCCCcCcceecCHHHHHHHHHHhCccceEEEe-ecCceEEecCCC
Q 002233 770 VFRRQDVPKLIEYLREHWTDFGRPD--GVTND-FVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGC 845 (949)
Q Consensus 770 IFrreDv~KLreyL~kh~~Ef~~~~--~~~~~-~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q-~lGEAVFIPAGC 845 (949)
=||-+-.++|+..|++-+-.+|... -++++ +.+| -.| |=-...-||.---|=.| -.-||||||||-
T Consensus 243 eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNid-----lly-----KYivhr~yG~~fttpAlVVEkdaVfIPAGW 312 (473)
T KOG3905|consen 243 EYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNID-----LLY-----KYIVHRSYGFPFTTPALVVEKDAVFIPAGW 312 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchH-----HHH-----HHHHHHhcCcccCCcceEeecceeEeccCC
Confidence 4666777777777777766665431 11111 0111 011 11112336653333223 346999999996
Q ss_pred c
Q 002233 846 P 846 (949)
Q Consensus 846 P 846 (949)
-
T Consensus 313 D 313 (473)
T KOG3905|consen 313 D 313 (473)
T ss_pred C
Confidence 3
No 86
>PRK04023 DNA polymerase II large subunit; Validated
Probab=33.11 E-value=22 Score=45.85 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=23.5
Q ss_pred cCCCCccccccCCCCCeEEcccCCC----ccccHhH
Q 002233 191 TGGQICHQCRRNDRERVVWCVKCDK----RGYCDSC 222 (949)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r----~~FC~~C 222 (949)
.....|..|.+.+. ...|.+|+. ..||..|
T Consensus 624 Vg~RfCpsCG~~t~--~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 624 IGRRKCPSCGKETF--YRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred ccCccCCCCCCcCC--cccCCCCCCCCCcceeCccc
Confidence 58889999999874 579999994 3466666
No 87
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=32.51 E-value=31 Score=38.26 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.3
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccccc
Q 002233 823 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTV 856 (949)
Q Consensus 823 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 856 (949)
.|-|.+=++.-..||+||||+|.||+......|-
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 4667788899999999999999999987666554
No 88
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=32.47 E-value=32 Score=36.44 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=46.3
Q ss_pred Cccee-cCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHH
Q 002233 807 GEVVY-LNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 871 (949)
Q Consensus 807 DQ~fY-Lt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 871 (949)
|..|| |.-++.-++.+ +=+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.+
T Consensus 55 dE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~ 118 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELDG 118 (177)
T ss_pred ceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCccc
Confidence 55566 44443333332 22346788899999999999999998899999999998888876553
No 89
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=32.09 E-value=19 Score=41.43 Aligned_cols=34 Identities=35% Similarity=0.935 Sum_probs=27.4
Q ss_pred cccccccCCCccccccccc-cCCCCC-cchhhhhhH
Q 002233 318 ADEQMCCNICRIPIIDYHR-HCGNCM-YDLCLSCCQ 351 (949)
Q Consensus 318 ~DERvyCDnCkTSIvD~HR-SCp~Cs-YDLCLsCC~ 351 (949)
--|+|-||.|.---|-|.| -|-.|+ ||||-+|--
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 3588999999776666666 488886 999999975
No 90
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=31.15 E-value=33 Score=35.68 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=39.7
Q ss_pred cceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHH
Q 002233 827 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 871 (949)
Q Consensus 827 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 871 (949)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 356788899999999999999988899999999999999887664
No 91
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.37 E-value=21 Score=32.32 Aligned_cols=13 Identities=46% Similarity=1.661 Sum_probs=9.9
Q ss_pred cccHhHHhhhcCC
Q 002233 217 GYCDSCISTWYSD 229 (949)
Q Consensus 217 ~FC~~CL~~rY~e 229 (949)
.||..||.+||.+
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999985
No 92
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=30.07 E-value=24 Score=30.42 Aligned_cols=29 Identities=31% Similarity=0.657 Sum_probs=18.8
Q ss_pred eEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
.++|..|++. ..+.++ ...++.+||.|+.
T Consensus 4 eiRC~~Cnkl-------La~~g~--~~~leIKCpRC~t 32 (51)
T PF10122_consen 4 EIRCGHCNKL-------LAKAGE--VIELEIKCPRCKT 32 (51)
T ss_pred ceeccchhHH-------HhhhcC--ccEEEEECCCCCc
Confidence 5789888862 222332 2356789999985
No 93
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=30.01 E-value=49 Score=27.77 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=28.9
Q ss_pred CccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002233 195 ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (949)
Q Consensus 195 ~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (949)
.|-=|++--...++ ..|+ ..||..||..|..+ ...||.|+..
T Consensus 3 ~Cpi~~~~~~~Pv~--~~~G-~v~~~~~i~~~~~~------~~~cP~~~~~ 44 (63)
T smart00504 3 LCPISLEVMKDPVI--LPSG-QTYERRAIEKWLLS------HGTDPVTGQP 44 (63)
T ss_pred CCcCCCCcCCCCEE--CCCC-CEEeHHHHHHHHHH------CCCCCCCcCC
Confidence 45555555444433 4677 58999999999854 4589999763
No 94
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=28.63 E-value=25 Score=39.10 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred cccCCCccccccccccCCCCCc
Q 002233 322 MCCNICRIPIIDYHRHCGNCMY 343 (949)
Q Consensus 322 vyCDnCkTSIvD~HRSCp~CsY 343 (949)
--|+||.+-+.-|.-+||+|+.
T Consensus 83 ~~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 83 GKCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhhccccceeeehhhcCCCCCc
Confidence 4599999999999999999975
No 95
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=28.01 E-value=29 Score=27.11 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.4
Q ss_pred CCCcceeeeeccccceeeeec
Q 002233 648 GNSVKNLHFNMPDMVYLLVHM 668 (949)
Q Consensus 648 GDSvTkLH~DmSDAVNIL~ht 668 (949)
|-|||+||+=--.-||+|.-+
T Consensus 3 glsvt~lhlfrde~vnflfci 23 (35)
T PF13216_consen 3 GLSVTNLHLFRDEKVNFLFCI 23 (35)
T ss_pred ceEEEEEEEeecCCccEEEEe
Confidence 679999999888899999765
No 96
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=27.66 E-value=73 Score=34.81 Aligned_cols=51 Identities=31% Similarity=0.507 Sum_probs=38.9
Q ss_pred ceeeccccCCCCHHHHHHHHHHHhcCCCchhhhhhhhhhhhhHHHH-HHHHHHHHHHhccCC
Q 002233 856 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYA-ASSAIKEVQKLVLDP 916 (949)
Q Consensus 856 IKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~LeVkKm~lya-~~~Avke~~~l~~~p 916 (949)
+|||+|+++ +.+-+.+++|.-.. .|++||++..+.+ -..||+.|++++.|-
T Consensus 6 LQvALD~~~---l~~Ai~~a~~v~~~-------~diiEvGTpLik~eG~~aV~~lr~~~pd~ 57 (217)
T COG0269 6 LQVALDLLD---LEEAIEIAEEVADY-------VDIIEVGTPLIKAEGMRAVRALRELFPDK 57 (217)
T ss_pred eEeeecccC---HHHHHHHHHHhhhc-------ceEEEeCcHHHHHhhHHHHHHHHHHCCCC
Confidence 689999986 66667777765432 6999999998854 237999999988654
No 97
>PRK11171 hypothetical protein; Provisional
Probab=27.58 E-value=44 Score=36.84 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=23.5
Q ss_pred ccceEEEeecCceEEecCCCcccccccc
Q 002233 826 VEPWSFEQHLGEAVFIPAGCPFQVRNLQ 853 (949)
Q Consensus 826 VepWtf~Q~lGEAVFIPAGCPHQVRNLk 853 (949)
|..=+++=..||.|+||+|.||+.+|..
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3444667778999999999999999976
No 98
>PRK11171 hypothetical protein; Provisional
Probab=27.20 E-value=36 Score=37.53 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 002233 823 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 823 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
+|.+..-++.=..||++++|+++||+.+|.-+
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCCC
Confidence 46777888888999999999999999999743
No 99
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.19 E-value=35 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.9
Q ss_pred CCccccccCC--CCCeEEcccCCCccccHhHHhhhcC
Q 002233 194 QICHQCRRND--RERVVWCVKCDKRGYCDSCISTWYS 228 (949)
Q Consensus 194 ~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 228 (949)
..|+.|.++= ..+...|..|+ ..||..|...+-.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg-~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCG-RIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCc-CCcChHHcCCeee
Confidence 4688888543 23577899999 4899999987744
No 100
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=27.16 E-value=33 Score=30.70 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.8
Q ss_pred EEEeecCceEEecCCCc
Q 002233 830 SFEQHLGEAVFIPAGCP 846 (949)
Q Consensus 830 tf~Q~lGEAVFIPAGCP 846 (949)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 45557899999999984
No 101
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=27.13 E-value=68 Score=37.74 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=47.9
Q ss_pred ceeeccccCCCCHHHHHHHHHHHhcCCCchhhhhhhhhhhhhHHHHH-HHHHHHHHHhccCCCCCcccCCCCCchh
Q 002233 856 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAA-SSAIKEVQKLVLDPKLGAELGFEDPNLT 930 (949)
Q Consensus 856 IKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~LeVkKm~lya~-~~Avke~~~l~~~p~~~~~~~~~d~~l~ 930 (949)
+.||+|+.++| +.+++++++... ..+.++|+.-.+++. -..|++|++...+=.+=+++-+.|+.-|
T Consensus 175 L~vALD~~~~~---~A~~i~~~l~~~------~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~ 241 (391)
T PRK13307 175 LQVALDLPDLE---EVERVLSQLPKS------DHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNL 241 (391)
T ss_pred EEEecCCCCHH---HHHHHHHhcccc------cceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhH
Confidence 58999999988 778888876543 124789999989887 6678888886544335567777777643
No 102
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.34 E-value=43 Score=35.30 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCCCcccCCCcCcceecCHHHHHHHHHHhCccceEEEe-ecCceEEecCCCccc
Q 002233 777 PKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGCPFQ 848 (949)
Q Consensus 777 ~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q-~lGEAVFIPAGCPHQ 848 (949)
+||..|...|. |... .+-=|-+.+-|.|.+.+. +-|-=.+ .-||-|+||||.=|-
T Consensus 80 eKvk~FfEEhl----h~de-----eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHR 135 (179)
T KOG2107|consen 80 EKVKSFFEEHL----HEDE-----EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHR 135 (179)
T ss_pred HHHHHHHHHhc----Cchh-----heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceee
Confidence 57777776554 3322 234467888998888754 5775544 469999999999986
No 103
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=26.06 E-value=42 Score=39.58 Aligned_cols=44 Identities=39% Similarity=0.603 Sum_probs=38.1
Q ss_pred cccccccccCCCCCceecCC--ccccCchhHHHH-HHhhhcCCCEEEe
Q 002233 462 SLCQYAHREDRDGNFLYCPS--SHDIRSEGIGNF-RKHWVKGEPVIVK 506 (949)
Q Consensus 462 ~l~~aA~re~s~dN~ly~P~--~~di~~d~l~hF-Q~hW~kGePVIVr 506 (949)
+|-+||+|. +-.|=||||. +.-+...+|.+| ++|..+|.-|+|.
T Consensus 160 ~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 160 QLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 577999997 7789999996 777888999999 6899999998884
No 104
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=26.01 E-value=32 Score=43.33 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=27.2
Q ss_pred CCCccccccCCCC-------CeEEcccCCCccccHhHHhhh
Q 002233 193 GQICHQCRRNDRE-------RVVWCVKCDKRGYCDSCISTW 226 (949)
Q Consensus 193 ~~~CHQCrqkt~~-------~~v~C~~C~r~~FC~~CL~~r 226 (949)
...|+.|+++-.. +.-.|++|+ ..||..|-.++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCG-rVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCG-IRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCc-cccCccccCCc
Confidence 5789999988742 455699999 59999999877
No 105
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=18 Score=35.91 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=12.4
Q ss_pred ccccccCCCcccccc
Q 002233 319 DEQMCCNICRIPIID 333 (949)
Q Consensus 319 DERvyCDnCkTSIvD 333 (949)
.+|.+|.+|-|..+-
T Consensus 67 ~~r~FC~~CGs~l~~ 81 (133)
T COG3791 67 AGRGFCPTCGSPLFW 81 (133)
T ss_pred CCCeecccCCCceEE
Confidence 456799999999886
No 106
>PF12852 Cupin_6: Cupin
Probab=25.53 E-value=40 Score=34.42 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=27.5
Q ss_pred ccCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc
Q 002233 801 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 853 (949)
Q Consensus 801 v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 853 (949)
..|=+-..++||...- +-+| +.=..||.||+|.|.||...--.
T Consensus 37 ~fh~V~~G~~~l~~~~--------~~~~--~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPG--------GGEP--IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEEEEECCeEEEEEcC--------CCCe--EEecCCCEEEEcCCCCeEeCCCC
Confidence 3455556667766221 1123 44467999999999999985433
No 107
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=25.43 E-value=38 Score=33.46 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=38.4
Q ss_pred cCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 002233 802 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 846 (949)
Q Consensus 802 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCP 846 (949)
.-|+|...-++...+=+.|.++||++.+.| +-||-|.|=+|-=
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~ 55 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDF 55 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCC
Confidence 348999999999999999999999999966 7899999999863
No 108
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=24.87 E-value=84 Score=32.18 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=35.8
Q ss_pred ccCcccccc-cCCCccccccccccCCC--CCcchhhhhhHHhhhccc
Q 002233 315 KLSADEQMC-CNICRIPIIDYHRHCGN--CMYDLCLSCCQDLREAST 358 (949)
Q Consensus 315 ~~~~DERvy-CDnCkTSIvD~HRSCp~--CsYDLCLsCC~ELR~g~l 358 (949)
.+..|..+| ||.|+-.=.|=|--=|+ |.|.+|-.||-.|=+-..
T Consensus 73 nvF~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~ 119 (140)
T PF05290_consen 73 NVFLDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN 119 (140)
T ss_pred eeecCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc
Confidence 334444888 99999998887776676 999999999999987664
No 109
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.85 E-value=67 Score=37.28 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=35.2
Q ss_pred cceEEEeecCceEEecCCCccccccccccceeec-----cccCCCCHHHHHHHHHHHhcCCC
Q 002233 827 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGL-----DFLFPESVGEAVRLAEEIRCLPN 883 (949)
Q Consensus 827 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl-----DFVSPEnV~eC~rLteEfR~Lp~ 883 (949)
+-+++.=..||.++||+|.+|-.+|+..=..+.+ .|-|+..+ .++.=|+.+|.
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~----~~~~~l~~~p~ 165 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTF----LVTDWLAHTPK 165 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCccee----eHHHHHHhCCH
Confidence 3555567899999999999999999864333333 35556532 23444555765
No 110
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=38 Score=37.91 Aligned_cols=47 Identities=28% Similarity=0.737 Sum_probs=34.8
Q ss_pred CCCCccccccCCCCCeEEcccCCCccccHhHHhh-hcCCCChHHhhhcCCCCCCcc
Q 002233 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCIST-WYSDIPLEELEKVCPACRGSC 246 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~-rY~e~~~edv~~~CP~Crg~C 246 (949)
+...|-=|--... ...|+-|+ ..||-.||.- |-..-. ..||.||.-|
T Consensus 214 ~d~kC~lC~e~~~--~ps~t~Cg-HlFC~~Cl~~~~t~~k~-----~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPE--VPSCTPCG-HLFCLSCLLISWTKKKY-----EFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccC--Cccccccc-chhhHHHHHHHHHhhcc-----ccCchhhhhc
Confidence 5678999987665 56889999 6999999987 533221 2699999754
No 111
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.17 E-value=46 Score=32.15 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred cCcccccccCCCcccccc-------ccccCCCCCcc
Q 002233 316 LSADEQMCCNICRIPIID-------YHRHCGNCMYD 344 (949)
Q Consensus 316 ~~~DERvyCDnCkTSIvD-------~HRSCp~CsYD 344 (949)
...+--+.|.+|....+. .|+.|++|.|-
T Consensus 16 ~klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 16 PKLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred cCCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 333456779999977776 79999999983
No 112
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.01 E-value=32 Score=30.02 Aligned_cols=24 Identities=38% Similarity=1.009 Sum_probs=20.0
Q ss_pred CcccccccCCCccccccccccCC----CCCc
Q 002233 317 SADEQMCCNICRIPIIDYHRHCG----NCMY 343 (949)
Q Consensus 317 ~~DERvyCDnCkTSIvD~HRSCp----~CsY 343 (949)
+.|+.|.|.-|.|+ |||+|. .|++
T Consensus 17 ~~dDiVvCp~Cgap---yHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 17 DGDDIVVCPECGAP---YHRDCWEKAGGCIN 44 (54)
T ss_pred CCCCEEECCCCCCc---ccHHHHhhCCceEe
Confidence 46888999999998 899996 4654
No 113
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.54 E-value=31 Score=44.37 Aligned_cols=32 Identities=25% Similarity=0.920 Sum_probs=25.1
Q ss_pred EEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 208 VWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 208 v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
-+|..|+ ..|=+.||.+|+.- -..-.||.||-
T Consensus 1489 krC~TCk-nKFH~~CLyKWf~S----s~~s~CPlCRs 1520 (1525)
T COG5219 1489 KRCATCK-NKFHTRCLYKWFAS----SARSNCPLCRS 1520 (1525)
T ss_pred cccchhh-hhhhHHHHHHHHHh----cCCCCCCcccc
Confidence 4788888 47999999999863 23458999983
No 114
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=34 Score=39.57 Aligned_cols=51 Identities=25% Similarity=0.663 Sum_probs=31.7
Q ss_pred CCCCccccccCCCCCe------EEcccCCCccccHhHHhhhc--CCCChHHhhhcCCCCCC
Q 002233 192 GGQICHQCRRNDRERV------VWCVKCDKRGYCDSCISTWY--SDIPLEELEKVCPACRG 244 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~------v~C~~C~r~~FC~~CL~~rY--~e~~~edv~~~CP~Crg 244 (949)
..+.|-=|+-.-.... -.=.+|. -.||..||.+|= ... ...+...||+||.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~-H~~Cl~Cir~wr~~~q~-~~~~sksCP~CRv 218 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCN-HSFCLNCIRKWRQATQF-ESKTSKSCPFCRV 218 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcc-hhhhhcHhHhhhhhhcc-ccccccCCCcccC
Confidence 4556666664433211 0112366 589999999996 332 3456789999996
No 115
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.36 E-value=58 Score=37.27 Aligned_cols=49 Identities=24% Similarity=0.677 Sum_probs=35.0
Q ss_pred CcCCCCccccccCC-CCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002233 190 DTGGQICHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (949)
Q Consensus 190 ~~~~~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (949)
...|--|--|.-.- +...++-.=|+ ..|=.+|+.+|-.+ ..-+||+||.
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~~-----y~~~CPvCrt 369 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLLG-----YSNKCPVCRT 369 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccC-ceechhHHHHHHhh-----hcccCCccCC
Confidence 35788898898654 33345555577 58999999999542 3459999985
No 116
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=22.33 E-value=41 Score=39.15 Aligned_cols=53 Identities=21% Similarity=0.636 Sum_probs=34.6
Q ss_pred CCCCccccccCCCCC------------------eEEcccCC-CccccHhHHhhhcCCCChHHh--------hhcCCCCCC
Q 002233 192 GGQICHQCRRNDRER------------------VVWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACRG 244 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~------------------~v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~Crg 244 (949)
....|--|.+....- ...|+.|- |-+.|..|+.+||--- ++.. +-.||.||.
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasr-Qd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASR-QDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhc-CCCCChhhhhcCCCCCCCCcc
Confidence 555676676665432 22566665 5689999999999742 2221 358999987
Q ss_pred c
Q 002233 245 S 245 (949)
Q Consensus 245 ~ 245 (949)
.
T Consensus 349 ~ 349 (358)
T PF10272_consen 349 K 349 (358)
T ss_pred c
Confidence 3
No 117
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=22.09 E-value=59 Score=29.82 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=27.6
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc--ccceeeccccCCCCHH
Q 002233 824 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLGLDFLFPESVG 869 (949)
Q Consensus 824 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~ 869 (949)
+.|..=++.=..||++|||+|-+|...--. .+....+.| +|+-+.
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~ 82 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLE 82 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHH
Confidence 445566677789999999999999987777 676666666 454443
No 118
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.95 E-value=44 Score=25.25 Aligned_cols=26 Identities=35% Similarity=1.073 Sum_probs=21.3
Q ss_pred cCCCccccccc-cccCCCCCcchhhhh
Q 002233 324 CNICRIPIIDY-HRHCGNCMYDLCLSC 349 (949)
Q Consensus 324 CDnCkTSIvD~-HRSCp~CsYDLCLsC 349 (949)
|+.|...|-.+ -=+|..|.|.|-+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 78888888888 778888888887776
No 119
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=21.86 E-value=54 Score=24.90 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=13.0
Q ss_pred ChhHHHHHHHHHHHHhC
Q 002233 775 DVPKLIEYLREHWTDFG 791 (949)
Q Consensus 775 Dv~KLreyL~kh~~Ef~ 791 (949)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999876653
No 120
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.78 E-value=32 Score=32.99 Aligned_cols=14 Identities=43% Similarity=1.533 Sum_probs=12.4
Q ss_pred cccHhHHhhhcCCC
Q 002233 217 GYCDSCISTWYSDI 230 (949)
Q Consensus 217 ~FC~~CL~~rY~e~ 230 (949)
.||..||.+||.+-
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999863
No 121
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=21.65 E-value=64 Score=34.68 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=25.0
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 002233 823 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 823 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
.+.|..=++.=..||+||||+|.+|++..-.+
T Consensus 56 ~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 56 ALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 35566666777799999999999999875443
No 122
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=21.61 E-value=52 Score=36.23 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=47.3
Q ss_pred eeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCcccCCCcCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 002233 767 HWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 846 (949)
Q Consensus 767 lWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCP 846 (949)
+-|+|-.+|-+.|---+. +..+. ++-.|-=|||.+|+-.-. =++-|.+=++.=..||.+|||.|.+
T Consensus 145 ~~d~~~~~d~s~m~aGf~----~~~~~-----sf~wtl~~dEi~YVLEGe-----~~l~IdG~t~~l~pGDvlfIPkGs~ 210 (233)
T PRK15457 145 LTDLVTGDDGSSMAAGFM----QWENA-----FFPWTLNYDEIDMVLEGE-----LHVRHEGETMIAKAGDVMFIPKGSS 210 (233)
T ss_pred eeeeeccCCCCceeeEEE----EEecC-----ccceeccceEEEEEEEeE-----EEEEECCEEEEeCCCcEEEECCCCe
Confidence 556666666665543221 11111 123455688888886653 2467789999999999999999999
Q ss_pred cccccc
Q 002233 847 FQVRNL 852 (949)
Q Consensus 847 HQVRNL 852 (949)
|.-.+-
T Consensus 211 ~hf~tp 216 (233)
T PRK15457 211 IEFGTP 216 (233)
T ss_pred EEecCC
Confidence 876443
No 123
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.54 E-value=47 Score=32.39 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=17.7
Q ss_pred ccccCCCcc--ccccccccCCCCC
Q 002233 321 QMCCNICRI--PIIDYHRHCGNCM 342 (949)
Q Consensus 321 RvyCDnCkT--SIvD~HRSCp~Cs 342 (949)
+.+|..|.. ++-+++-.||+|.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCC
Confidence 689999975 5556777799997
No 124
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=21.34 E-value=64 Score=27.00 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=24.6
Q ss_pred ccCCCccccccccccCCCCC-cchhhhhhHHhh
Q 002233 323 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 354 (949)
Q Consensus 323 yCDnCkTSIvD~HRSCp~Cs-YDLCLsCC~ELR 354 (949)
.||.|..-+...+=+|.++. ||||-.|-.+=|
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhCcC
Confidence 48888877776666677776 999999998543
No 125
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.05 E-value=47 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=21.1
Q ss_pred CCCeEEcccCCCccccHhHHhhhcCCC
Q 002233 204 RERVVWCVKCDKRGYCDSCISTWYSDI 230 (949)
Q Consensus 204 ~~~~v~C~~C~r~~FC~~CL~~rY~e~ 230 (949)
....+.|..|+ ..||..|...|-+.+
T Consensus 37 ~~~~v~C~~C~-~~fC~~C~~~~H~~~ 62 (64)
T smart00647 37 GCNRVTCPKCG-FSFCFRCKVPWHSPV 62 (64)
T ss_pred CCCeeECCCCC-CeECCCCCCcCCCCC
Confidence 34689999999 599999998886654
No 126
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=47 Score=38.55 Aligned_cols=59 Identities=25% Similarity=0.432 Sum_probs=36.8
Q ss_pred CCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCccccccccccccc
Q 002233 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNM 257 (949)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNCs~Clr~~g~ 257 (949)
...+|--|.--=.. .+.=..|. .+||..||..-.-. -...||-||..|--+.=|+.+..
T Consensus 42 ~~v~c~icl~llk~-tmttkeCl-hrfc~~ci~~a~r~-----gn~ecptcRk~l~SkrsLr~Dp~ 100 (381)
T KOG0311|consen 42 IQVICPICLSLLKK-TMTTKECL-HRFCFDCIWKALRS-----GNNECPTCRKKLVSKRSLRIDPN 100 (381)
T ss_pred hhhccHHHHHHHHh-hcccHHHH-HHHHHHHHHHHHHh-----cCCCCchHHhhccccccCCCCcc
Confidence 55678877632211 11122466 69999999764321 13479999998877766666653
No 127
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=20.51 E-value=53 Score=29.05 Aligned_cols=22 Identities=18% Similarity=0.619 Sum_probs=19.7
Q ss_pred eecCcCCCCchhHHHHHHhhhh
Q 002233 32 RCTAMSMPDKTVCEKHYIQAKR 53 (949)
Q Consensus 32 rc~~~~~~~~~~ce~h~~~~~~ 53 (949)
.|+.++||..+||-+|+..-++
T Consensus 8 ~C~~~~lp~~~yC~~HIl~D~~ 29 (65)
T PF13891_consen 8 GCSQPALPGSKYCIRHILEDPN 29 (65)
T ss_pred CcCcccCchhhHHHHHhccCCC
Confidence 5999999999999999987665
No 128
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.10 E-value=52 Score=35.11 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.6
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 002233 824 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 854 (949)
Q Consensus 824 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 854 (949)
+.|..=++.=..||++|||+|.+|...+...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3444445556789999999999998877665
No 129
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=1e+02 Score=34.93 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=36.2
Q ss_pred CcCCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCcc
Q 002233 190 DTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSC 246 (949)
Q Consensus 190 ~~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~C 246 (949)
.+.++.|--|..--.-..+. ..|+ ..||.-||....- -++.+.||.|-..|
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~-~~C~-HiyCY~Ci~ts~~----~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVI-GKCG-HIYCYYCIATSRL----WDASFTCPLCGENV 286 (298)
T ss_pred ccCCceeeccCCCCCCCeee-cccc-ceeehhhhhhhhc----chhhcccCccCCCC
Confidence 46888999998655433322 2367 5899999988763 35678999997654
Done!