Query 002234
Match_columns 949
No_of_seqs 1056 out of 4987
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 19:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.8E-42 1.9E-46 348.0 26.4 305 625-947 112-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-40 3E-45 344.2 20.4 272 630-947 177-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-38 3.1E-43 324.6 25.9 278 659-948 106-438 (480)
4 KOG0279 G protein beta subunit 100.0 3.4E-35 7.4E-40 289.6 28.2 283 625-949 12-313 (315)
5 KOG0315 G-protein beta subunit 100.0 1.2E-32 2.6E-37 266.9 28.4 266 639-949 9-288 (311)
6 KOG0286 G-protein beta subunit 100.0 3.4E-32 7.3E-37 269.8 29.1 280 623-947 50-343 (343)
7 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-33 5.1E-38 290.7 20.2 238 665-948 172-417 (459)
8 KOG0281 Beta-TrCP (transducin 100.0 1.7E-33 3.7E-38 283.7 13.7 265 633-948 200-476 (499)
9 KOG0318 WD40 repeat stress pro 100.0 1.8E-30 4E-35 275.6 35.2 323 621-949 183-602 (603)
10 KOG0319 WD40-repeat-containing 100.0 2.2E-31 4.9E-36 293.1 29.0 318 629-949 106-577 (775)
11 KOG0285 Pleiotropic regulator 100.0 1.3E-31 2.8E-36 271.6 22.7 284 618-947 141-437 (460)
12 KOG0265 U5 snRNP-specific prot 100.0 1.3E-30 2.9E-35 259.6 24.4 277 625-948 44-337 (338)
13 KOG0284 Polyadenylation factor 100.0 8.6E-32 1.9E-36 277.7 16.2 269 633-947 101-378 (464)
14 KOG0293 WD40 repeat-containing 100.0 8.9E-31 1.9E-35 270.0 23.4 291 611-948 207-512 (519)
15 KOG0279 G protein beta subunit 100.0 5E-30 1.1E-34 253.1 27.2 244 661-949 8-262 (315)
16 KOG0295 WD40 repeat-containing 100.0 1.7E-30 3.7E-35 264.8 23.0 277 654-947 93-404 (406)
17 KOG0263 Transcription initiati 100.0 1.2E-30 2.6E-35 291.1 23.8 238 668-949 378-649 (707)
18 KOG0318 WD40 repeat stress pro 100.0 5.9E-29 1.3E-33 264.1 34.8 319 626-949 145-560 (603)
19 KOG0273 Beta-transducin family 100.0 4.4E-30 9.4E-35 269.6 25.7 260 641-948 192-481 (524)
20 KOG0645 WD40 repeat protein [G 100.0 2.3E-29 4.9E-34 247.5 28.0 265 640-949 27-311 (312)
21 KOG0281 Beta-TrCP (transducin 100.0 2.2E-31 4.7E-36 268.5 13.0 232 667-949 196-428 (499)
22 KOG0278 Serine/threonine kinas 100.0 9.7E-31 2.1E-35 253.5 16.4 269 633-948 22-296 (334)
23 KOG0296 Angio-associated migra 100.0 9.6E-29 2.1E-33 252.4 31.7 305 633-949 69-398 (399)
24 KOG0286 G-protein beta subunit 100.0 4.3E-29 9.3E-34 247.8 28.2 247 661-948 48-302 (343)
25 KOG0291 WD40-repeat-containing 100.0 3.4E-28 7.4E-33 267.9 35.8 309 631-948 99-507 (893)
26 KOG0263 Transcription initiati 100.0 1.2E-29 2.5E-34 283.1 24.4 260 632-937 382-703 (707)
27 KOG0266 WD40 repeat-containing 100.0 1.2E-28 2.5E-33 284.2 30.9 270 633-948 164-453 (456)
28 PLN00181 protein SPA1-RELATED; 100.0 4E-28 8.6E-33 300.6 37.1 274 629-948 484-792 (793)
29 KOG0316 Conserved WD40 repeat- 100.0 6.4E-29 1.4E-33 239.1 22.3 271 627-946 16-296 (307)
30 KOG0273 Beta-transducin family 100.0 3.8E-28 8.2E-33 255.1 29.7 268 633-948 240-522 (524)
31 KOG0291 WD40-repeat-containing 100.0 1.5E-27 3.2E-32 263.0 35.2 298 635-949 272-612 (893)
32 cd00200 WD40 WD40 domain, foun 100.0 1.3E-27 2.9E-32 257.8 34.1 277 625-947 6-289 (289)
33 KOG0313 Microtubule binding pr 100.0 1.7E-28 3.7E-33 251.5 25.2 289 636-947 111-416 (423)
34 KOG0285 Pleiotropic regulator 100.0 8.9E-29 1.9E-33 251.0 20.7 246 655-948 137-388 (460)
35 KOG0315 G-protein beta subunit 100.0 1.7E-27 3.8E-32 231.2 25.9 255 633-928 45-309 (311)
36 KOG0282 mRNA splicing factor [ 100.0 1.7E-28 3.7E-33 258.9 20.3 279 652-947 198-503 (503)
37 KOG0319 WD40-repeat-containing 100.0 1.8E-27 3.9E-32 262.5 28.3 290 640-947 293-617 (775)
38 KOG0289 mRNA splicing factor [ 100.0 3.5E-26 7.6E-31 237.9 36.2 265 640-949 231-506 (506)
39 KOG0276 Vesicle coat complex C 100.0 1.4E-27 2.9E-32 257.9 24.8 273 628-945 13-295 (794)
40 KOG0643 Translation initiation 100.0 1.2E-27 2.5E-32 234.7 21.7 268 663-948 5-316 (327)
41 KOG0295 WD40 repeat-containing 100.0 1.5E-27 3.3E-32 243.4 23.2 262 627-905 107-405 (406)
42 KOG0274 Cdc4 and related F-box 100.0 6.3E-27 1.4E-31 268.4 28.6 261 636-949 214-482 (537)
43 KOG0292 Vesicle coat complex C 100.0 9.4E-27 2E-31 259.8 28.8 270 630-914 9-329 (1202)
44 KOG0275 Conserved WD40 repeat- 100.0 1.2E-27 2.5E-32 239.3 18.3 273 630-947 215-507 (508)
45 KOG0306 WD40-repeat-containing 100.0 4.7E-26 1E-30 251.1 31.5 306 638-949 75-580 (888)
46 KOG0288 WD40 repeat protein Ti 100.0 7.9E-28 1.7E-32 249.0 15.9 278 621-947 168-459 (459)
47 KOG0306 WD40-repeat-containing 99.9 1.8E-26 3.8E-31 254.4 25.3 278 625-948 370-663 (888)
48 KOG0266 WD40 repeat-containing 99.9 5.7E-26 1.2E-30 261.9 30.5 252 652-949 145-409 (456)
49 KOG0265 U5 snRNP-specific prot 99.9 7.8E-26 1.7E-30 225.7 23.6 245 659-948 38-295 (338)
50 KOG0645 WD40 repeat protein [G 99.9 6.4E-25 1.4E-29 216.2 29.6 242 661-948 7-260 (312)
51 KOG0284 Polyadenylation factor 99.9 4.7E-27 1E-31 242.9 14.2 235 668-948 96-336 (464)
52 KOG1407 WD40 repeat protein [F 99.9 7.3E-25 1.6E-29 214.6 27.7 278 622-948 14-310 (313)
53 KOG0276 Vesicle coat complex C 99.9 7.5E-26 1.6E-30 244.5 21.8 241 663-948 8-256 (794)
54 KOG0640 mRNA cleavage stimulat 99.9 6.2E-26 1.3E-30 226.3 18.7 279 626-947 110-424 (430)
55 KOG0277 Peroxisomal targeting 99.9 1.3E-25 2.8E-30 218.9 19.6 274 630-947 13-307 (311)
56 cd00200 WD40 WD40 domain, foun 99.9 1.8E-24 4E-29 233.2 30.9 242 662-949 3-249 (289)
57 KOG0292 Vesicle coat complex C 99.9 2.3E-25 4.9E-30 248.8 23.3 272 664-948 5-320 (1202)
58 KOG0313 Microtubule binding pr 99.9 3.7E-25 8E-30 227.1 21.2 243 665-948 102-375 (423)
59 KOG0316 Conserved WD40 repeat- 99.9 7.6E-25 1.6E-29 211.1 21.8 242 660-948 9-256 (307)
60 KOG0973 Histone transcription 99.9 2.8E-24 6E-29 248.2 27.3 281 633-949 18-355 (942)
61 PTZ00421 coronin; Provisional 99.9 1.8E-23 4E-28 239.9 33.1 254 635-930 27-314 (493)
62 KOG0305 Anaphase promoting com 99.9 3.3E-24 7E-29 236.8 25.1 260 642-948 190-460 (484)
63 PLN00181 protein SPA1-RELATED; 99.9 1.6E-23 3.5E-28 259.6 34.4 254 649-948 457-737 (793)
64 KOG0282 mRNA splicing factor [ 99.9 3E-25 6.5E-30 234.5 15.8 265 625-904 211-503 (503)
65 PTZ00420 coronin; Provisional 99.9 1.5E-23 3.3E-28 241.4 31.3 242 646-931 50-318 (568)
66 KOG0283 WD40 repeat-containing 99.9 2E-24 4.3E-29 243.8 23.3 203 701-948 360-575 (712)
67 KOG0310 Conserved WD40 repeat- 99.9 3.9E-24 8.5E-29 226.7 23.9 249 650-945 48-305 (487)
68 KOG0296 Angio-associated migra 99.9 9.5E-24 2.1E-28 216.0 25.3 271 659-948 55-355 (399)
69 KOG0294 WD40 repeat-containing 99.9 1.5E-23 3.3E-28 210.6 26.1 258 643-949 4-281 (362)
70 KOG0772 Uncharacterized conser 99.9 3.1E-24 6.7E-29 227.5 21.1 284 626-946 165-484 (641)
71 KOG0268 Sof1-like rRNA process 99.9 8.9E-25 1.9E-29 222.8 15.2 262 663-948 61-344 (433)
72 KOG0274 Cdc4 and related F-box 99.9 1E-23 2.2E-28 242.1 25.3 232 666-949 206-441 (537)
73 KOG0647 mRNA export protein (c 99.9 2.6E-23 5.7E-28 207.8 24.5 265 657-937 16-311 (347)
74 KOG0308 Conserved WD40 repeat- 99.9 1.8E-24 4E-29 235.4 17.5 275 638-948 35-326 (735)
75 KOG1539 WD repeat protein [Gen 99.9 6.4E-23 1.4E-27 229.2 30.1 307 636-949 168-606 (910)
76 KOG0275 Conserved WD40 repeat- 99.9 2.1E-24 4.6E-29 216.1 16.3 241 663-948 208-466 (508)
77 KOG0301 Phospholipase A2-activ 99.9 2.6E-23 5.7E-28 228.2 25.1 253 639-948 24-287 (745)
78 KOG0283 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 237.8 22.3 240 626-907 265-577 (712)
79 KOG0310 Conserved WD40 repeat- 99.9 4.2E-23 9.1E-28 218.9 23.8 231 632-907 72-310 (487)
80 KOG1446 Histone H3 (Lys4) meth 99.9 4.3E-22 9.3E-27 201.4 29.6 270 631-946 17-300 (311)
81 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.4E-28 204.4 17.3 260 624-947 7-284 (299)
82 KOG1036 Mitotic spindle checkp 99.9 9.6E-23 2.1E-27 204.9 24.6 259 633-939 18-294 (323)
83 KOG0294 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 204.5 24.1 242 626-886 39-305 (362)
84 PTZ00421 coronin; Provisional 99.9 3.3E-22 7.2E-27 229.6 31.6 232 680-949 34-290 (493)
85 PTZ00420 coronin; Provisional 99.9 6.8E-22 1.5E-26 227.7 32.9 223 683-949 49-293 (568)
86 KOG0277 Peroxisomal targeting 99.9 2.1E-23 4.6E-28 203.5 15.8 229 634-905 67-308 (311)
87 KOG1408 WD40 repeat protein [F 99.9 2.1E-22 4.6E-27 220.2 25.1 309 633-949 327-713 (1080)
88 KOG0300 WD40 repeat-containing 99.9 2.5E-22 5.4E-27 201.0 21.5 290 640-949 124-476 (481)
89 KOG0293 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 209.5 20.1 245 660-948 216-469 (519)
90 KOG1407 WD40 repeat protein [F 99.9 3.1E-22 6.7E-27 196.3 21.3 238 662-945 14-257 (313)
91 KOG0641 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 182.3 29.4 281 630-949 34-349 (350)
92 KOG0299 U3 snoRNP-associated p 99.9 6.1E-22 1.3E-26 208.5 23.2 246 661-949 135-410 (479)
93 KOG0647 mRNA export protein (c 99.9 1.3E-21 2.9E-26 195.7 24.0 259 633-897 32-315 (347)
94 KOG0289 mRNA splicing factor [ 99.9 9E-22 1.9E-26 205.3 23.1 237 668-947 219-460 (506)
95 KOG0264 Nucleosome remodeling 99.9 6.2E-22 1.3E-26 208.9 21.4 247 663-949 119-404 (422)
96 KOG2096 WD40 repeat protein [G 99.9 5.4E-21 1.2E-25 192.1 24.6 288 621-946 79-399 (420)
97 KOG0640 mRNA cleavage stimulat 99.9 7.1E-22 1.5E-26 197.5 18.2 246 662-947 106-381 (430)
98 KOG0299 U3 snoRNP-associated p 99.9 2.3E-21 5E-26 204.2 23.0 271 626-946 140-453 (479)
99 KOG0288 WD40 repeat protein Ti 99.9 1.5E-22 3.1E-27 210.2 13.3 245 659-949 166-417 (459)
100 KOG1539 WD repeat protein [Gen 99.9 3.3E-20 7.2E-25 207.7 30.2 297 639-947 213-646 (910)
101 KOG1063 RNA polymerase II elon 99.9 6.8E-21 1.5E-25 209.2 24.2 316 625-948 188-647 (764)
102 KOG0269 WD40 repeat-containing 99.9 5.2E-22 1.1E-26 220.5 15.5 233 671-944 90-335 (839)
103 KOG0278 Serine/threonine kinas 99.9 5.6E-22 1.2E-26 192.9 13.8 243 660-949 6-254 (334)
104 KOG0308 Conserved WD40 repeat- 99.9 1.1E-21 2.4E-26 213.9 16.8 231 680-948 39-284 (735)
105 KOG4283 Transcription-coupled 99.9 1.2E-20 2.7E-25 187.5 22.2 268 639-947 55-363 (397)
106 KOG0301 Phospholipase A2-activ 99.9 7.6E-21 1.6E-25 209.1 21.4 237 660-948 6-248 (745)
107 KOG2445 Nuclear pore complex c 99.9 8.3E-20 1.8E-24 183.2 26.8 255 663-948 8-317 (361)
108 KOG1446 Histone H3 (Lys4) meth 99.9 1.8E-19 4E-24 182.5 29.2 240 662-949 8-262 (311)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.2E-19 9.1E-24 194.7 34.3 258 641-949 2-279 (300)
110 KOG0646 WD40 repeat protein [G 99.9 1.8E-20 3.9E-25 197.9 22.1 230 640-948 50-306 (476)
111 KOG0321 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 205.7 19.9 297 639-948 63-390 (720)
112 KOG0643 Translation initiation 99.9 1.9E-20 4E-25 184.3 18.8 266 625-907 7-318 (327)
113 KOG0973 Histone transcription 99.9 5.9E-20 1.3E-24 212.7 24.4 255 666-948 11-311 (942)
114 KOG2055 WD40 repeat protein [G 99.8 1.7E-19 3.7E-24 190.0 24.7 271 666-949 211-512 (514)
115 KOG0270 WD40 repeat-containing 99.8 2.5E-20 5.3E-25 195.7 17.5 229 639-911 191-454 (463)
116 KOG1036 Mitotic spindle checkp 99.8 2.3E-19 5.1E-24 180.7 23.7 234 663-948 8-261 (323)
117 KOG0264 Nucleosome remodeling 99.8 5E-20 1.1E-24 194.6 19.8 232 635-906 132-404 (422)
118 KOG0300 WD40 repeat-containing 99.8 9.5E-20 2.1E-24 182.6 19.8 254 640-908 160-478 (481)
119 KOG0305 Anaphase promoting com 99.8 1.1E-19 2.4E-24 201.0 21.7 237 629-908 218-463 (484)
120 KOG0772 Uncharacterized conser 99.8 4.2E-20 9.1E-25 196.4 17.3 237 702-947 159-443 (641)
121 KOG2048 WD40 repeat protein [G 99.8 3.5E-18 7.6E-23 188.1 32.7 257 633-905 30-318 (691)
122 KOG1408 WD40 repeat protein [F 99.8 1.1E-19 2.5E-24 199.0 20.9 255 640-907 392-714 (1080)
123 KOG2106 Uncharacterized conser 99.8 6.7E-18 1.5E-22 179.4 33.5 294 639-947 212-519 (626)
124 KOG0267 Microtubule severing p 99.8 4.7E-21 1E-25 211.3 9.2 248 643-940 7-259 (825)
125 KOG0269 WD40 repeat-containing 99.8 1.8E-20 3.8E-25 208.5 13.6 234 634-909 94-343 (839)
126 KOG0639 Transducin-like enhanc 99.8 2.7E-20 5.8E-25 196.8 14.2 229 630-905 467-703 (705)
127 KOG2106 Uncharacterized conser 99.8 1.7E-18 3.7E-23 183.9 27.8 308 626-949 102-477 (626)
128 KOG4328 WD40 protein [Function 99.8 2.7E-19 5.8E-24 188.4 21.5 277 661-947 179-493 (498)
129 KOG1274 WD40 repeat protein [G 99.8 6.5E-19 1.4E-23 199.8 26.0 238 665-949 10-262 (933)
130 KOG1274 WD40 repeat protein [G 99.8 1.3E-18 2.7E-23 197.5 27.5 269 634-946 19-297 (933)
131 KOG0267 Microtubule severing p 99.8 2E-20 4.3E-25 206.4 9.8 218 633-896 33-258 (825)
132 KOG0650 WD40 repeat nucleolar 99.8 1.7E-18 3.8E-23 187.2 24.0 268 660-946 392-732 (733)
133 KOG1273 WD40 repeat protein [G 99.8 9.4E-19 2E-23 175.9 19.9 259 671-948 26-321 (405)
134 KOG0268 Sof1-like rRNA process 99.8 1.3E-19 2.8E-24 185.3 14.1 252 641-912 80-351 (433)
135 KOG0639 Transducin-like enhanc 99.8 4.2E-19 9.1E-24 187.8 17.5 269 633-948 424-703 (705)
136 KOG1332 Vesicle coat complex C 99.8 2.1E-19 4.6E-24 174.8 13.7 220 662-948 5-240 (299)
137 KOG0641 WD40 repeat protein [G 99.8 1.8E-17 3.8E-22 159.1 26.3 232 700-948 23-302 (350)
138 KOG4283 Transcription-coupled 99.8 1.9E-18 4.1E-23 172.1 18.9 219 662-948 37-275 (397)
139 KOG1063 RNA polymerase II elon 99.8 2.7E-17 5.8E-22 181.2 27.6 322 620-948 259-698 (764)
140 KOG2445 Nuclear pore complex c 99.8 1.9E-17 4E-22 166.5 24.0 260 626-914 11-329 (361)
141 KOG2048 WD40 repeat protein [G 99.8 2.8E-17 6.1E-22 181.0 27.5 237 668-948 25-274 (691)
142 KOG0322 G-protein beta subunit 99.8 1.6E-18 3.6E-23 170.4 15.3 279 659-948 5-322 (323)
143 KOG2096 WD40 repeat protein [G 99.8 4.9E-18 1.1E-22 171.0 18.7 209 704-949 80-308 (420)
144 KOG4378 Nuclear protein COP1 [ 99.8 4E-18 8.6E-23 180.4 18.6 247 642-931 49-305 (673)
145 PF04564 U-box: U-box domain; 99.8 1.8E-19 3.9E-24 150.1 5.5 72 15-87 1-72 (73)
146 KOG0646 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 178.7 18.2 237 631-905 84-349 (476)
147 KOG0302 Ribosome Assembly prot 99.8 1.5E-17 3.3E-22 171.2 20.4 244 663-946 146-435 (440)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.9E-16 6.3E-21 172.2 31.1 254 634-929 36-300 (300)
149 KOG0302 Ribosome Assembly prot 99.8 1.2E-17 2.7E-22 171.9 18.0 218 705-949 146-378 (440)
150 KOG1034 Transcriptional repres 99.8 3.2E-17 6.9E-22 166.2 19.7 268 640-948 55-382 (385)
151 KOG0270 WD40 repeat-containing 99.8 2.5E-17 5.5E-22 173.2 19.0 268 640-948 137-448 (463)
152 KOG1445 Tumor-specific antigen 99.8 1.2E-16 2.5E-21 173.5 23.7 110 836-947 627-748 (1012)
153 KOG1188 WD40 repeat protein [G 99.7 8.7E-17 1.9E-21 164.1 19.5 270 641-948 41-345 (376)
154 KOG0307 Vesicle coat complex C 99.7 1E-17 2.2E-22 195.0 14.2 259 647-948 36-326 (1049)
155 KOG4378 Nuclear protein COP1 [ 99.7 7.9E-17 1.7E-21 170.7 19.4 257 645-948 7-279 (673)
156 KOG2055 WD40 repeat protein [G 99.7 8.3E-17 1.8E-21 169.9 18.3 276 622-906 205-512 (514)
157 KOG2919 Guanine nucleotide-bin 99.7 3.4E-16 7.3E-21 158.3 20.8 272 630-940 51-361 (406)
158 KOG1009 Chromatin assembly com 99.7 6.1E-16 1.3E-20 161.2 22.7 280 642-945 28-368 (434)
159 KOG1034 Transcriptional repres 99.7 3.9E-17 8.6E-22 165.5 13.1 250 640-906 105-383 (385)
160 KOG0649 WD40 repeat protein [G 99.7 6.7E-15 1.5E-19 143.4 27.6 271 633-946 15-313 (325)
161 KOG1273 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 153.6 22.3 270 631-907 26-323 (405)
162 KOG0642 Cell-cycle nuclear pro 99.7 1E-16 2.2E-21 173.4 14.7 259 653-948 282-560 (577)
163 KOG0307 Vesicle coat complex C 99.7 4.7E-17 1E-21 189.5 12.3 226 641-909 81-330 (1049)
164 KOG0650 WD40 repeat nucleolar 99.7 8.3E-16 1.8E-20 166.8 20.1 236 701-947 391-678 (733)
165 KOG1538 Uncharacterized conser 99.7 1.5E-15 3.2E-20 165.8 22.1 257 670-948 14-292 (1081)
166 KOG0644 Uncharacterized conser 99.7 8.9E-17 1.9E-21 179.8 12.8 269 625-947 187-466 (1113)
167 KOG0642 Cell-cycle nuclear pro 99.7 2E-16 4.4E-21 171.1 14.8 252 625-914 291-569 (577)
168 KOG4227 WD40 repeat protein [G 99.7 2.4E-15 5.1E-20 155.1 21.7 285 624-947 52-385 (609)
169 KOG0321 WD40 repeat-containing 99.7 7.7E-16 1.7E-20 168.4 19.0 238 639-908 111-393 (720)
170 COG2319 FOG: WD40 repeat [Gene 99.7 1.6E-13 3.4E-18 156.5 38.3 295 638-948 120-441 (466)
171 KOG1587 Cytoplasmic dynein int 99.7 5.2E-15 1.1E-19 168.9 25.1 272 650-949 222-516 (555)
172 PRK11028 6-phosphogluconolacto 99.7 4.8E-14 1E-18 157.2 32.1 267 643-948 5-303 (330)
173 KOG0303 Actin-binding protein 99.7 3.1E-15 6.8E-20 155.1 18.9 207 660-909 73-297 (472)
174 KOG1517 Guanine nucleotide bin 99.7 9.8E-15 2.1E-19 167.5 22.9 267 640-948 1076-1380(1387)
175 COG2319 FOG: WD40 repeat [Gene 99.7 2.4E-13 5.3E-18 155.0 35.0 277 629-949 66-359 (466)
176 KOG1963 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 157.8 31.1 292 647-948 178-537 (792)
177 PLN03200 cellulose synthase-in 99.6 1.1E-14 2.5E-19 184.1 25.0 322 120-465 11-393 (2102)
178 KOG4328 WD40 protein [Function 99.6 1.4E-14 3E-19 153.2 20.2 258 641-907 201-496 (498)
179 KOG0649 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 137.8 21.7 236 671-948 13-273 (325)
180 KOG1007 WD repeat protein TSSC 99.6 3.7E-14 8.1E-19 141.5 21.1 259 649-948 39-360 (370)
181 KOG1538 Uncharacterized conser 99.6 1.4E-14 2.9E-19 158.4 19.0 252 630-906 14-293 (1081)
182 smart00504 Ubox Modified RING 99.6 4.3E-16 9.4E-21 127.1 5.5 63 18-82 1-63 (63)
183 KOG0303 Actin-binding protein 99.6 3.2E-14 7E-19 147.7 19.2 215 636-889 90-320 (472)
184 KOG2110 Uncharacterized conser 99.6 5.1E-13 1.1E-17 138.3 25.8 234 710-949 5-248 (391)
185 KOG1240 Protein kinase contain 99.6 2E-13 4.4E-18 159.4 25.2 254 655-949 1034-1334(1431)
186 KOG0290 Conserved WD40 repeat- 99.6 1.8E-13 3.9E-18 136.9 18.5 239 665-945 93-361 (364)
187 KOG4497 Uncharacterized conser 99.6 1.1E-12 2.5E-17 133.1 24.0 303 632-942 12-425 (447)
188 KOG2919 Guanine nucleotide-bin 99.5 3.8E-13 8.2E-18 136.4 20.2 244 671-949 52-327 (406)
189 KOG0771 Prolactin regulatory e 99.5 6.5E-14 1.4E-18 147.6 15.0 194 714-948 148-353 (398)
190 PRK01742 tolB translocation pr 99.5 3E-13 6.4E-18 155.8 21.4 231 649-930 183-426 (429)
191 KOG1524 WD40 repeat-containing 99.5 1.5E-13 3.3E-18 147.4 17.3 206 679-945 76-282 (737)
192 PRK11028 6-phosphogluconolacto 99.5 3E-12 6.4E-17 142.8 28.3 229 681-948 5-257 (330)
193 KOG1517 Guanine nucleotide bin 99.5 4.1E-13 9E-18 154.4 21.3 260 648-949 1048-1333(1387)
194 KOG0290 Conserved WD40 repeat- 99.5 5.4E-13 1.2E-17 133.5 18.7 242 669-949 45-318 (364)
195 KOG1334 WD40 repeat protein [G 99.5 6.2E-14 1.3E-18 149.3 12.4 285 627-947 141-464 (559)
196 PLN03200 cellulose synthase-in 99.5 2.9E-13 6.4E-18 171.6 20.5 314 137-468 418-768 (2102)
197 KOG1445 Tumor-specific antigen 99.5 5.9E-14 1.3E-18 152.7 11.9 141 633-781 633-785 (1012)
198 KOG1007 WD repeat protein TSSC 99.5 4.1E-13 8.9E-18 134.2 16.1 223 686-948 38-288 (370)
199 KOG0771 Prolactin regulatory e 99.5 2.1E-13 4.5E-18 143.8 14.8 201 672-907 148-355 (398)
200 KOG1188 WD40 repeat protein [G 99.5 1.1E-12 2.3E-17 134.5 19.3 193 679-914 41-250 (376)
201 KOG0644 Uncharacterized conser 99.5 2E-14 4.3E-19 161.2 7.4 238 661-949 183-426 (1113)
202 PRK01742 tolB translocation pr 99.5 1.3E-12 2.9E-17 150.4 21.6 210 687-948 183-400 (429)
203 KOG1963 WD40 repeat protein [G 99.5 8.1E-12 1.8E-16 142.8 25.8 268 672-948 20-321 (792)
204 KOG2110 Uncharacterized conser 99.5 5.6E-11 1.2E-15 123.4 29.3 224 638-907 15-249 (391)
205 KOG1009 Chromatin assembly com 99.5 7.5E-13 1.6E-17 138.4 14.9 161 667-869 12-197 (434)
206 KOG1523 Actin-related protein 99.4 6.4E-12 1.4E-16 127.8 19.7 225 667-930 9-260 (361)
207 KOG1240 Protein kinase contain 99.4 1.2E-11 2.7E-16 144.9 23.6 273 635-947 1056-1431(1431)
208 KOG0322 G-protein beta subunit 99.4 3.8E-12 8.3E-17 126.0 15.7 235 640-905 25-322 (323)
209 KOG1523 Actin-related protein 99.4 1.4E-11 3.1E-16 125.4 19.4 229 633-897 15-269 (361)
210 KOG1587 Cytoplasmic dynein int 99.4 2.6E-11 5.6E-16 138.9 21.5 224 687-948 221-471 (555)
211 PF02239 Cytochrom_D1: Cytochr 99.4 4.2E-10 9.1E-15 125.7 30.1 292 642-948 8-346 (369)
212 KOG4227 WD40 repeat protein [G 99.4 3.4E-11 7.5E-16 124.7 19.1 245 662-949 50-322 (609)
213 PF15227 zf-C3HC4_4: zinc fing 99.4 4.5E-13 9.7E-18 97.6 3.4 39 21-59 1-42 (42)
214 PRK05137 tolB translocation pr 99.4 2.7E-10 5.8E-15 131.8 28.5 212 688-948 182-411 (435)
215 KOG1272 WD40-repeat-containing 99.4 1.6E-12 3.6E-17 137.8 8.9 259 636-941 137-401 (545)
216 PRK04922 tolB translocation pr 99.3 1.2E-10 2.5E-15 134.6 24.9 212 688-948 184-410 (433)
217 PRK03629 tolB translocation pr 99.3 2.9E-10 6.3E-15 130.8 27.9 212 688-948 179-405 (429)
218 PRK03629 tolB translocation pr 99.3 5.5E-10 1.2E-14 128.5 30.0 231 650-929 179-427 (429)
219 KOG2139 WD40 repeat protein [G 99.3 6.3E-10 1.4E-14 115.0 26.4 264 639-948 109-430 (445)
220 KOG1310 WD40 repeat protein [G 99.3 1.1E-11 2.4E-16 133.7 14.0 215 701-949 41-303 (758)
221 PRK04922 tolB translocation pr 99.3 2.9E-10 6.4E-15 131.3 25.9 231 650-929 184-432 (433)
222 KOG2111 Uncharacterized conser 99.3 1.8E-09 3.9E-14 110.3 27.1 227 670-907 7-257 (346)
223 KOG2111 Uncharacterized conser 99.3 6.8E-10 1.5E-14 113.3 23.5 229 712-948 7-255 (346)
224 PLN03208 E3 ubiquitin-protein 99.3 2.7E-12 5.8E-17 124.1 4.9 69 5-74 5-88 (193)
225 PRK05137 tolB translocation pr 99.3 1.2E-09 2.6E-14 126.4 27.9 233 650-930 182-433 (435)
226 KOG2321 WD40 repeat protein [G 99.3 2.8E-10 6.1E-15 123.9 20.4 231 708-947 49-300 (703)
227 PRK02889 tolB translocation pr 99.3 1.1E-09 2.5E-14 126.0 26.8 232 650-930 176-425 (427)
228 KOG1272 WD40-repeat-containing 99.3 7.1E-12 1.5E-16 133.0 7.6 188 713-948 132-322 (545)
229 KOG3881 Uncharacterized conser 99.3 2.4E-10 5.2E-15 119.5 18.8 210 636-889 111-342 (412)
230 KOG1524 WD40 repeat-containing 99.3 1E-10 2.2E-15 126.0 16.4 204 640-903 75-283 (737)
231 KOG2321 WD40 repeat protein [G 99.2 1.3E-09 2.8E-14 118.8 23.6 265 665-946 48-340 (703)
232 PRK02889 tolB translocation pr 99.2 1E-09 2.2E-14 126.4 24.0 205 688-941 176-392 (427)
233 TIGR00599 rad18 DNA repair pro 99.2 1E-11 2.3E-16 135.3 6.7 75 12-88 20-94 (397)
234 KOG2394 WD40 protein DMR-N9 [G 99.2 5.8E-10 1.3E-14 120.7 19.1 159 769-929 182-384 (636)
235 KOG2139 WD40 repeat protein [G 99.2 5.9E-10 1.3E-14 115.2 18.3 193 669-938 99-299 (445)
236 KOG3881 Uncharacterized conser 99.2 1.4E-09 2.9E-14 114.0 20.8 251 642-930 71-342 (412)
237 KOG1334 WD40 repeat protein [G 99.2 1.4E-10 2.9E-15 124.2 13.3 249 660-947 134-422 (559)
238 KOG1310 WD40 repeat protein [G 99.2 8.4E-11 1.8E-15 127.0 11.3 247 621-914 43-311 (758)
239 TIGR03300 assembly_YfgL outer 99.2 5.9E-08 1.3E-12 110.4 35.1 288 639-946 64-376 (377)
240 PF02239 Cytochrom_D1: Cytochr 99.2 9.4E-09 2E-13 114.9 27.6 252 680-949 8-302 (369)
241 KOG1409 Uncharacterized conser 99.2 1.4E-09 3.1E-14 111.9 18.0 307 625-949 21-394 (404)
242 TIGR02800 propeller_TolB tol-p 99.1 8.3E-09 1.8E-13 119.2 26.1 205 688-941 170-386 (417)
243 PF08662 eIF2A: Eukaryotic tra 99.1 4.5E-09 9.7E-14 106.7 19.7 109 836-949 59-179 (194)
244 PF10282 Lactonase: Lactonase, 99.1 1.2E-07 2.7E-12 106.0 33.1 267 650-948 13-321 (345)
245 KOG4224 Armadillo repeat prote 99.1 3.8E-10 8.3E-15 116.8 11.7 272 164-465 163-447 (550)
246 KOG2315 Predicted translation 99.1 3.8E-08 8.2E-13 107.9 26.2 291 634-949 40-390 (566)
247 KOG0974 WD-repeat protein WDR6 99.1 5.6E-09 1.2E-13 121.8 20.8 259 641-948 18-287 (967)
248 KOG1354 Serine/threonine prote 99.1 1.5E-08 3.2E-13 104.4 20.9 281 630-946 27-431 (433)
249 PRK00178 tolB translocation pr 99.1 4.8E-08 1E-12 113.2 28.3 211 689-948 180-405 (430)
250 KOG0280 Uncharacterized conser 99.1 1.3E-08 2.7E-13 103.0 20.0 249 687-946 45-330 (339)
251 PF13923 zf-C3HC4_2: Zinc fing 99.1 9.4E-11 2E-15 84.7 3.2 38 21-59 1-39 (39)
252 KOG0287 Postreplication repair 99.1 7E-11 1.5E-15 120.2 3.2 72 14-87 19-90 (442)
253 PRK04792 tolB translocation pr 99.0 4.8E-08 1.1E-12 112.9 26.6 230 651-929 199-446 (448)
254 PRK04792 tolB translocation pr 99.0 6.7E-08 1.5E-12 111.7 27.7 211 689-948 199-424 (448)
255 KOG1064 RAVE (regulator of V-A 99.0 1.3E-09 2.8E-14 132.2 13.5 238 650-942 2190-2439(2439)
256 KOG4224 Armadillo repeat prote 99.0 4E-09 8.7E-14 109.4 15.1 262 177-466 93-365 (550)
257 KOG0974 WD-repeat protein WDR6 99.0 5.4E-09 1.2E-13 122.0 18.0 196 625-867 84-288 (967)
258 PF08662 eIF2A: Eukaryotic tra 99.0 2.4E-08 5.2E-13 101.4 19.6 157 714-914 9-186 (194)
259 KOG2394 WD40 protein DMR-N9 [G 99.0 1E-08 2.2E-13 111.3 17.4 185 680-887 187-383 (636)
260 TIGR02800 propeller_TolB tol-p 99.0 1.7E-07 3.7E-12 108.2 29.3 231 650-927 170-416 (417)
261 KOG4547 WD40 repeat-containing 99.0 9.9E-09 2.1E-13 113.3 17.6 206 720-948 3-219 (541)
262 PRK00178 tolB translocation pr 99.0 2.1E-07 4.5E-12 107.8 29.8 233 651-930 180-428 (430)
263 KOG4497 Uncharacterized conser 99.0 2E-09 4.4E-14 109.9 10.8 218 674-946 14-237 (447)
264 KOG1064 RAVE (regulator of V-A 99.0 2.3E-09 5E-14 130.1 11.9 210 681-949 2183-2398(2439)
265 PF14835 zf-RING_6: zf-RING of 99.0 1.4E-10 3.1E-15 89.4 1.0 60 16-79 5-65 (65)
266 TIGR02658 TTQ_MADH_Hv methylam 98.9 5.8E-06 1.3E-10 90.5 35.9 257 650-914 27-338 (352)
267 TIGR02658 TTQ_MADH_Hv methylam 98.9 2.1E-06 4.5E-11 94.0 32.1 248 688-949 27-330 (352)
268 KOG4547 WD40 repeat-containing 98.9 1.8E-07 3.9E-12 103.5 23.7 183 679-907 6-221 (541)
269 PRK01029 tolB translocation pr 98.9 7.8E-07 1.7E-11 102.1 30.0 235 651-931 166-426 (428)
270 COG5354 Uncharacterized protei 98.9 6.8E-07 1.5E-11 97.1 26.2 296 632-949 36-395 (561)
271 KOG2041 WD40 repeat protein [G 98.9 1.9E-08 4.1E-13 112.0 14.6 230 666-940 12-279 (1189)
272 PLN02919 haloacid dehalogenase 98.9 1.3E-06 2.8E-11 110.3 32.9 247 672-949 571-888 (1057)
273 KOG1354 Serine/threonine prote 98.9 6.5E-08 1.4E-12 99.8 16.9 273 667-948 24-358 (433)
274 COG5432 RAD18 RING-finger-cont 98.9 8.1E-10 1.8E-14 110.1 3.0 72 14-87 21-92 (391)
275 KOG2041 WD40 repeat protein [G 98.9 9.5E-08 2.1E-12 106.6 19.0 275 634-945 20-333 (1189)
276 TIGR03300 assembly_YfgL outer 98.9 2.8E-06 6E-11 96.6 32.1 254 674-948 61-337 (377)
277 PF00097 zf-C3HC4: Zinc finger 98.9 1.5E-09 3.4E-14 79.6 3.5 39 21-59 1-41 (41)
278 PF10282 Lactonase: Lactonase, 98.9 1.9E-06 4.2E-11 96.3 29.8 233 681-948 2-274 (345)
279 PRK11138 outer membrane biogen 98.9 4.4E-06 9.5E-11 95.5 32.9 289 639-948 68-393 (394)
280 COG2706 3-carboxymuconate cycl 98.9 5.6E-06 1.2E-10 87.2 30.3 269 649-948 15-320 (346)
281 PF13445 zf-RING_UBOX: RING-ty 98.8 1.4E-09 3.1E-14 79.0 2.5 36 21-57 1-43 (43)
282 KOG1409 Uncharacterized conser 98.8 2.1E-07 4.6E-12 96.2 18.7 233 700-949 14-270 (404)
283 PLN02919 haloacid dehalogenase 98.8 2.1E-06 4.6E-11 108.4 31.9 240 640-910 580-892 (1057)
284 KOG0320 Predicted E3 ubiquitin 98.8 2.1E-09 4.5E-14 100.7 3.5 52 17-69 130-183 (187)
285 KOG0823 Predicted E3 ubiquitin 98.8 1.9E-09 4E-14 106.1 2.8 59 15-74 44-104 (230)
286 PF05804 KAP: Kinesin-associat 98.8 1.2E-07 2.7E-12 111.9 18.5 270 183-490 263-540 (708)
287 PRK01029 tolB translocation pr 98.8 1.1E-06 2.3E-11 101.0 25.6 219 688-949 165-403 (428)
288 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.9E-09 8.4E-14 81.1 3.5 47 17-64 1-48 (50)
289 KOG1912 WD40 repeat protein [G 98.8 2.1E-06 4.6E-11 97.2 26.0 303 640-948 26-550 (1062)
290 KOG4190 Uncharacterized conser 98.8 2.4E-08 5.2E-13 108.0 10.0 245 661-946 728-985 (1034)
291 PHA02929 N1R/p28-like protein; 98.7 7E-09 1.5E-13 105.6 4.3 50 14-64 170-227 (238)
292 KOG0317 Predicted E3 ubiquitin 98.7 6.8E-09 1.5E-13 105.2 3.7 54 15-69 236-289 (293)
293 PF13639 zf-RING_2: Ring finge 98.7 6E-09 1.3E-13 77.7 2.0 40 20-60 2-44 (44)
294 KOG0309 Conserved WD40 repeat- 98.7 1.2E-07 2.7E-12 106.3 13.0 268 636-949 32-339 (1081)
295 KOG2314 Translation initiation 98.7 2.4E-06 5.2E-11 93.6 21.6 288 633-941 215-559 (698)
296 COG4946 Uncharacterized protei 98.7 1.3E-05 2.7E-10 86.4 25.8 172 639-853 331-505 (668)
297 PF13360 PQQ_2: PQQ-like domai 98.6 2.6E-05 5.6E-10 82.4 28.6 215 686-949 1-230 (238)
298 KOG0280 Uncharacterized conser 98.6 2.4E-07 5.1E-12 94.0 11.8 106 636-742 129-243 (339)
299 COG2706 3-carboxymuconate cycl 98.6 2.3E-05 5.1E-10 82.6 26.9 223 687-948 15-273 (346)
300 COG4946 Uncharacterized protei 98.6 0.00011 2.5E-09 79.2 32.3 209 719-938 275-507 (668)
301 KOG0166 Karyopherin (importin) 98.6 3.1E-06 6.8E-11 94.9 21.0 334 123-487 67-411 (514)
302 cd00162 RING RING-finger (Real 98.6 3.8E-08 8.3E-13 73.9 3.9 44 20-63 1-45 (45)
303 PF11789 zf-Nse: Zinc-finger o 98.6 1.9E-08 4.2E-13 78.3 2.0 44 16-59 9-54 (57)
304 PF04762 IKI3: IKI3 family; I 98.6 4.1E-05 8.8E-10 95.2 31.8 275 666-948 73-455 (928)
305 PF13360 PQQ_2: PQQ-like domai 98.6 4.7E-05 1E-09 80.4 28.2 226 649-913 2-237 (238)
306 TIGR00570 cdk7 CDK-activating 98.6 2.5E-07 5.5E-12 96.8 9.8 106 17-138 2-116 (309)
307 KOG2315 Predicted translation 98.5 3.2E-05 6.9E-10 85.5 26.0 260 669-949 35-344 (566)
308 KOG3914 WD repeat protein WDR4 98.5 1.1E-06 2.4E-11 93.2 14.2 163 712-914 64-231 (390)
309 KOG4190 Uncharacterized conser 98.5 5.2E-07 1.1E-11 97.9 11.8 264 639-945 746-1032(1034)
310 PHA02926 zinc finger-like prot 98.5 5.3E-08 1.1E-12 94.9 3.6 51 14-64 166-230 (242)
311 PF15492 Nbas_N: Neuroblastoma 98.5 6.7E-05 1.4E-09 77.0 25.8 230 680-949 10-259 (282)
312 KOG2177 Predicted E3 ubiquitin 98.5 6.1E-08 1.3E-12 108.8 4.5 73 14-90 9-81 (386)
313 smart00184 RING Ring finger. E 98.5 8.7E-08 1.9E-12 69.3 3.7 39 21-59 1-39 (39)
314 COG5170 CDC55 Serine/threonine 98.5 2.4E-06 5.2E-11 87.1 14.9 277 667-947 25-365 (460)
315 PF14634 zf-RING_5: zinc-RING 98.4 1.5E-07 3.2E-12 70.0 3.2 41 20-61 1-44 (44)
316 COG5170 CDC55 Serine/threonine 98.4 4.2E-06 9.1E-11 85.4 14.3 237 633-904 31-365 (460)
317 KOG4532 WD40-like repeat conta 98.4 3E-05 6.6E-10 78.0 19.7 196 640-875 84-290 (344)
318 KOG2066 Vacuolar assembly/sort 98.4 6.1E-06 1.3E-10 94.6 16.7 182 667-868 38-234 (846)
319 PRK04043 tolB translocation pr 98.4 0.00013 2.7E-09 83.5 27.5 202 689-940 170-388 (419)
320 PRK11138 outer membrane biogen 98.4 0.00016 3.5E-09 82.6 28.5 263 675-948 66-352 (394)
321 KOG4714 Nucleoporin [Nuclear s 98.4 5.6E-06 1.2E-10 82.8 13.9 238 671-947 39-316 (319)
322 PF00400 WD40: WD domain, G-be 98.4 1.1E-06 2.4E-11 63.6 6.7 38 701-738 2-39 (39)
323 KOG0311 Predicted E3 ubiquitin 98.4 5.6E-08 1.2E-12 100.9 -0.3 71 13-83 38-109 (381)
324 KOG4532 WD40-like repeat conta 98.4 5E-05 1.1E-09 76.5 20.0 228 672-940 71-323 (344)
325 KOG0309 Conserved WD40 repeat- 98.4 2E-06 4.4E-11 96.8 11.1 233 633-907 75-340 (1081)
326 KOG2314 Translation initiation 98.4 8.9E-05 1.9E-09 81.6 23.1 258 670-949 212-525 (698)
327 KOG0882 Cyclophilin-related pe 98.4 7.6E-06 1.7E-10 87.7 14.6 243 666-948 7-304 (558)
328 KOG3914 WD repeat protein WDR4 98.3 4.3E-06 9.4E-11 88.8 12.2 92 857-949 130-223 (390)
329 KOG4642 Chaperone-dependent E3 98.3 4.2E-07 9.1E-12 90.0 4.3 77 12-89 205-281 (284)
330 COG5354 Uncharacterized protei 98.3 0.00017 3.6E-09 79.0 24.3 271 654-948 16-347 (561)
331 PF05804 KAP: Kinesin-associat 98.3 6.4E-05 1.4E-09 89.3 22.7 367 120-530 121-504 (708)
332 KOG1832 HIV-1 Vpr-binding prot 98.3 6.3E-07 1.4E-11 102.4 5.1 218 660-936 1093-1318(1516)
333 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4.1E-11 62.4 5.9 39 908-947 1-39 (39)
334 COG5574 PEX10 RING-finger-cont 98.3 3.1E-07 6.8E-12 92.1 2.3 53 16-68 213-266 (271)
335 PF08450 SGL: SMP-30/Gluconola 98.2 0.0041 8.9E-08 66.0 33.3 222 673-938 4-244 (246)
336 KOG1912 WD40 repeat protein [G 98.2 9.8E-05 2.1E-09 84.2 20.7 238 667-947 14-302 (1062)
337 PF07433 DUF1513: Protein of u 98.2 0.0018 3.9E-08 68.8 28.6 237 672-939 8-276 (305)
338 KOG2695 WD40 repeat protein [G 98.2 3.2E-06 7E-11 87.6 7.9 165 682-888 228-402 (425)
339 KOG1645 RING-finger-containing 98.2 7.4E-05 1.6E-09 79.4 18.0 239 661-907 186-462 (463)
340 PF08450 SGL: SMP-30/Gluconola 98.2 0.0017 3.7E-08 69.0 29.2 208 639-887 11-233 (246)
341 KOG2164 Predicted E3 ubiquitin 98.2 8E-07 1.7E-11 97.4 3.2 70 17-87 185-262 (513)
342 COG5222 Uncharacterized conser 98.2 2.7E-06 6E-11 85.6 6.4 69 19-88 275-345 (427)
343 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0047 1E-07 62.4 28.7 299 640-949 23-351 (354)
344 PRK04043 tolB translocation pr 98.2 0.0019 4.1E-08 73.9 30.2 193 669-908 188-402 (419)
345 PF04762 IKI3: IKI3 family; I 98.2 0.00075 1.6E-08 84.1 28.9 267 669-948 22-332 (928)
346 KOG4714 Nucleoporin [Nuclear s 98.2 1.3E-05 2.7E-10 80.4 10.5 145 797-948 98-253 (319)
347 cd00216 PQQ_DH Dehydrogenases 98.2 0.0025 5.3E-08 74.9 31.5 121 802-932 303-450 (488)
348 KOG0978 E3 ubiquitin ligase in 98.1 9.1E-07 2E-11 102.1 1.8 54 16-69 641-694 (698)
349 KOG4159 Predicted E3 ubiquitin 98.1 2E-06 4.4E-11 94.4 4.2 77 11-88 77-157 (398)
350 PF12678 zf-rbx1: RING-H2 zinc 98.1 2.5E-06 5.5E-11 70.9 3.7 45 14-60 16-73 (73)
351 KOG2114 Vacuolar assembly/sort 98.0 0.00093 2E-08 77.7 23.7 214 670-923 27-260 (933)
352 KOG0166 Karyopherin (importin) 98.0 4.9E-05 1.1E-09 85.5 13.2 261 179-462 162-434 (514)
353 KOG2660 Locus-specific chromos 98.0 3E-06 6.5E-11 88.0 2.9 69 13-82 10-82 (331)
354 KOG0297 TNF receptor-associate 98.0 4.5E-06 9.8E-11 93.5 4.5 73 14-87 17-90 (391)
355 KOG1275 PAB-dependent poly(A) 98.0 7.6E-05 1.7E-09 86.7 14.2 142 797-947 184-340 (1118)
356 KOG1002 Nucleotide excision re 98.0 3.8E-06 8.2E-11 91.0 3.3 54 14-67 532-589 (791)
357 KOG2695 WD40 repeat protein [G 98.0 1.6E-05 3.4E-10 82.7 7.5 125 801-928 265-401 (425)
358 KOG1275 PAB-dependent poly(A) 98.0 0.00012 2.7E-09 85.0 14.7 184 639-865 146-340 (1118)
359 PF11768 DUF3312: Protein of u 97.9 0.0026 5.6E-08 71.9 24.2 86 861-949 238-329 (545)
360 COG5152 Uncharacterized conser 97.9 7E-06 1.5E-10 77.9 3.3 61 17-80 195-255 (259)
361 KOG0824 Predicted E3 ubiquitin 97.9 5E-06 1.1E-10 84.9 2.5 51 19-69 8-58 (324)
362 PF04826 Arm_2: Armadillo-like 97.9 0.00022 4.7E-09 75.0 14.7 187 170-372 14-206 (254)
363 KOG3621 WD40 repeat-containing 97.9 0.0012 2.6E-08 75.5 21.1 257 670-948 37-352 (726)
364 KOG2066 Vacuolar assembly/sort 97.8 0.00058 1.3E-08 78.9 17.2 166 771-948 48-232 (846)
365 KOG2114 Vacuolar assembly/sort 97.8 0.0035 7.5E-08 73.2 23.4 214 634-889 29-265 (933)
366 PF15492 Nbas_N: Neuroblastoma 97.8 0.005 1.1E-07 63.5 22.2 223 636-876 5-268 (282)
367 KOG3621 WD40 repeat-containing 97.8 0.0028 6.1E-08 72.5 22.0 273 630-907 35-354 (726)
368 KOG0882 Cyclophilin-related pe 97.8 0.00015 3.3E-09 78.0 11.3 227 640-876 20-314 (558)
369 KOG2879 Predicted E3 ubiquitin 97.8 2.3E-05 5E-10 79.0 4.3 57 8-64 229-287 (298)
370 KOG1813 Predicted E3 ubiquitin 97.7 1.5E-05 3.2E-10 81.3 2.5 64 17-83 240-303 (313)
371 PF06433 Me-amine-dh_H: Methyl 97.7 0.015 3.2E-07 62.6 24.7 223 688-915 17-329 (342)
372 cd00216 PQQ_DH Dehydrogenases 97.7 0.021 4.6E-07 67.1 28.6 264 676-948 59-423 (488)
373 KOG1920 IkappaB kinase complex 97.7 0.0092 2E-07 72.4 25.1 230 668-909 68-325 (1265)
374 KOG3617 WD40 and TPR repeat-co 97.7 0.0013 2.8E-08 75.9 17.2 279 649-937 40-373 (1416)
375 KOG1832 HIV-1 Vpr-binding prot 97.7 3.5E-05 7.6E-10 88.6 4.6 193 700-948 1091-1290(1516)
376 PF07433 DUF1513: Protein of u 97.6 0.021 4.6E-07 60.8 24.6 233 639-901 16-280 (305)
377 KOG1645 RING-finger-containing 97.6 0.0019 4.2E-08 69.0 16.4 241 690-948 175-460 (463)
378 COG5064 SRP1 Karyopherin (impo 97.5 0.00082 1.8E-08 70.1 11.6 78 294-371 151-230 (526)
379 KOG0802 E3 ubiquitin ligase [P 97.5 3.4E-05 7.3E-10 91.0 1.8 49 15-64 288-341 (543)
380 PF12861 zf-Apc11: Anaphase-pr 97.5 9.2E-05 2E-09 61.8 3.7 52 14-65 17-83 (85)
381 PF08596 Lgl_C: Lethal giant l 97.5 0.085 1.8E-06 59.6 28.0 207 701-939 77-326 (395)
382 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.036 7.7E-07 62.3 25.2 271 649-938 22-346 (353)
383 PF04053 Coatomer_WDAD: Coatom 97.5 0.032 6.8E-07 63.9 24.5 213 705-949 27-262 (443)
384 KOG2042 Ubiquitin fusion degra 97.4 0.00015 3.3E-09 86.7 5.8 74 13-88 865-939 (943)
385 PRK02888 nitrous-oxide reducta 97.4 0.0094 2E-07 69.1 19.1 165 765-938 239-450 (635)
386 PF00780 CNH: CNH domain; Int 97.4 0.096 2.1E-06 56.5 26.3 231 639-915 6-264 (275)
387 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.092 2E-06 53.5 22.7 101 639-742 62-167 (354)
388 cd00020 ARM Armadillo/beta-cat 97.3 0.00097 2.1E-08 61.7 8.4 102 295-404 2-103 (120)
389 KOG1008 Uncharacterized conser 97.3 7.9E-05 1.7E-09 83.5 1.1 196 669-906 57-275 (783)
390 PF11768 DUF3312: Protein of u 97.3 0.0016 3.4E-08 73.6 10.8 75 665-743 256-332 (545)
391 PF08596 Lgl_C: Lethal giant l 97.2 0.068 1.5E-06 60.4 23.9 223 712-949 3-290 (395)
392 COG5243 HRD1 HRD ubiquitin lig 97.2 0.00018 3.8E-09 75.3 3.0 49 15-64 284-345 (491)
393 KOG4367 Predicted Zn-finger pr 97.2 0.00014 2.9E-09 77.3 1.4 35 16-50 2-36 (699)
394 PRK02888 nitrous-oxide reducta 97.1 0.06 1.3E-06 62.7 22.2 99 846-949 286-404 (635)
395 PF08553 VID27: VID27 cytoplas 97.1 0.014 3.1E-07 70.2 17.9 132 807-947 501-645 (794)
396 KOG1920 IkappaB kinase complex 97.1 0.032 7E-07 67.9 20.3 228 710-948 68-321 (1265)
397 COG5064 SRP1 Karyopherin (impo 97.1 0.0052 1.1E-07 64.4 11.3 217 173-400 162-425 (526)
398 PRK09687 putative lyase; Provi 97.0 0.026 5.6E-07 60.7 17.3 223 170-465 25-251 (280)
399 PF03178 CPSF_A: CPSF A subuni 97.0 0.094 2E-06 58.1 22.0 130 810-948 62-201 (321)
400 smart00320 WD40 WD40 repeats. 97.0 0.0018 4E-08 45.0 5.4 38 701-738 3-40 (40)
401 KOG2160 Armadillo/beta-catenin 97.0 0.0076 1.7E-07 64.6 12.0 170 291-468 115-286 (342)
402 PF04841 Vps16_N: Vps16, N-ter 97.0 0.56 1.2E-05 53.6 28.1 50 689-742 62-111 (410)
403 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.91 2E-05 53.7 30.5 58 860-917 442-501 (527)
404 KOG1008 Uncharacterized conser 96.9 0.00051 1.1E-08 77.3 2.2 187 642-867 72-275 (783)
405 PF02897 Peptidase_S9_N: Proly 96.8 1.2 2.7E-05 51.1 30.1 221 670-934 125-385 (414)
406 cd00020 ARM Armadillo/beta-cat 96.8 0.004 8.7E-08 57.5 7.7 117 242-370 3-119 (120)
407 PF03178 CPSF_A: CPSF A subuni 96.8 0.6 1.3E-05 51.7 26.3 210 688-945 2-261 (321)
408 smart00320 WD40 WD40 repeats. 96.8 0.0031 6.7E-08 43.8 5.3 38 909-947 3-40 (40)
409 PF04841 Vps16_N: Vps16, N-ter 96.8 0.71 1.5E-05 52.8 27.1 68 836-905 216-286 (410)
410 KOG0826 Predicted E3 ubiquitin 96.8 0.00094 2E-08 69.4 3.3 57 11-68 293-350 (357)
411 COG0823 TolB Periplasmic compo 96.8 0.061 1.3E-06 61.4 18.2 189 704-937 186-387 (425)
412 KOG4441 Proteins containing BT 96.7 0.15 3.2E-06 60.8 21.9 226 640-909 285-549 (571)
413 KOG3617 WD40 and TPR repeat-co 96.7 0.0034 7.4E-08 72.6 7.7 107 840-948 19-130 (1416)
414 COG3391 Uncharacterized conser 96.7 1.5 3.2E-05 49.7 29.1 233 670-947 32-281 (381)
415 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.0012 2.6E-08 70.2 3.7 53 15-69 110-166 (260)
416 KOG4199 Uncharacterized conser 96.7 0.15 3.2E-06 54.0 18.3 317 114-465 69-404 (461)
417 COG5113 UFD2 Ubiquitin fusion 96.7 0.0028 6.1E-08 71.1 6.1 75 12-88 848-923 (929)
418 PF10508 Proteasom_PSMB: Prote 96.7 0.057 1.2E-06 63.5 17.5 223 178-423 86-321 (503)
419 KOG2395 Protein involved in va 96.6 0.022 4.7E-07 63.4 12.1 133 803-946 349-497 (644)
420 KOG4640 Anaphase-promoting com 96.6 0.0097 2.1E-07 67.5 9.6 90 668-760 20-112 (665)
421 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.35 7.7E-06 54.3 22.3 242 687-939 22-301 (353)
422 PRK09687 putative lyase; Provi 96.5 0.37 8E-06 51.9 21.1 222 165-459 51-277 (280)
423 COG5540 RING-finger-containing 96.5 0.0015 3.4E-08 66.8 2.6 48 18-65 323-373 (374)
424 COG3490 Uncharacterized protei 96.5 0.49 1.1E-05 49.1 20.1 272 638-946 45-345 (366)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.4 3.1 6.8E-05 49.2 30.0 101 640-743 69-192 (527)
426 PHA02713 hypothetical protein; 96.4 0.19 4E-06 60.1 19.9 218 674-911 299-538 (557)
427 COG3386 Gluconolactonase [Carb 96.4 0.92 2E-05 49.4 23.4 223 680-938 39-274 (307)
428 KOG0804 Cytoplasmic Zn-finger 96.4 0.0017 3.7E-08 70.3 2.3 46 16-64 173-222 (493)
429 COG0823 TolB Periplasmic compo 96.4 0.17 3.7E-06 57.8 18.5 181 663-889 187-380 (425)
430 KOG4628 Predicted E3 ubiquitin 96.4 0.0019 4.1E-08 69.4 2.6 47 19-65 230-279 (348)
431 KOG4172 Predicted E3 ubiquitin 96.4 0.00086 1.9E-08 49.8 0.0 46 19-64 8-54 (62)
432 KOG3039 Uncharacterized conser 96.3 0.0026 5.5E-08 63.2 3.0 53 16-69 219-275 (303)
433 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.29 6.2E-06 43.9 15.5 100 839-945 2-110 (111)
434 COG5276 Uncharacterized conser 96.3 1.8 3.9E-05 45.3 27.1 262 668-948 86-368 (370)
435 PF06977 SdiA-regulated: SdiA- 96.2 2 4.3E-05 45.2 26.1 202 663-903 16-247 (248)
436 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.13 2.9E-06 46.0 12.5 89 641-735 16-109 (111)
437 KOG1734 Predicted RING-contain 96.1 0.0017 3.7E-08 65.3 0.6 55 15-69 221-286 (328)
438 KOG4199 Uncharacterized conser 96.1 0.14 3E-06 54.2 14.0 235 210-464 102-359 (461)
439 PF08553 VID27: VID27 cytoplas 96.1 0.13 2.7E-06 62.4 15.8 141 681-866 497-646 (794)
440 COG3391 Uncharacterized conser 96.0 1.6 3.4E-05 49.5 24.2 218 635-889 80-309 (381)
441 KOG4692 Predicted E3 ubiquitin 96.0 0.0036 7.9E-08 65.2 2.2 49 16-65 420-468 (489)
442 KOG2079 Vacuolar assembly/sort 95.9 0.16 3.4E-06 61.4 15.5 75 668-743 89-163 (1206)
443 KOG1039 Predicted E3 ubiquitin 95.9 0.0043 9.3E-08 67.2 2.5 50 15-64 158-221 (344)
444 PRK13800 putative oxidoreducta 95.9 0.2 4.4E-06 63.4 17.5 245 171-460 624-895 (897)
445 PF04826 Arm_2: Armadillo-like 95.8 0.12 2.6E-06 54.5 12.9 154 296-465 8-164 (254)
446 KOG0828 Predicted E3 ubiquitin 95.8 0.0045 9.7E-08 67.6 2.1 51 15-65 568-635 (636)
447 PF00780 CNH: CNH domain; Int 95.8 3.4 7.4E-05 44.4 25.8 225 676-949 5-255 (275)
448 PHA02713 hypothetical protein; 95.8 0.77 1.7E-05 54.9 21.1 86 860-948 433-532 (557)
449 KOG4441 Proteins containing BT 95.8 0.85 1.8E-05 54.4 21.2 216 680-942 287-534 (571)
450 PF06977 SdiA-regulated: SdiA- 95.6 3.6 7.8E-05 43.3 24.8 202 704-946 15-247 (248)
451 PF14583 Pectate_lyase22: Olig 95.6 4.9 0.00011 44.6 24.6 91 634-726 41-140 (386)
452 PF00514 Arm: Armadillo/beta-c 95.5 0.015 3.3E-07 42.3 3.3 39 290-328 2-40 (41)
453 PF14570 zf-RING_4: RING/Ubox 95.5 0.011 2.3E-07 44.0 2.4 43 21-63 1-47 (48)
454 KOG3039 Uncharacterized conser 95.3 0.012 2.5E-07 58.7 2.8 38 13-50 38-75 (303)
455 PF04053 Coatomer_WDAD: Coatom 95.2 1.2 2.7E-05 51.1 19.2 164 642-818 81-262 (443)
456 KOG2444 WD40 repeat protein [G 95.2 0.054 1.2E-06 54.4 7.0 100 640-741 70-178 (238)
457 KOG0825 PHD Zn-finger protein 95.2 0.0057 1.2E-07 70.2 0.1 51 17-68 122-175 (1134)
458 KOG1897 Damage-specific DNA bi 95.1 11 0.00024 46.0 31.2 106 838-945 776-894 (1096)
459 KOG1785 Tyrosine kinase negati 95.1 0.0086 1.9E-07 63.5 1.3 48 20-67 371-419 (563)
460 KOG2395 Protein involved in va 95.1 0.3 6.5E-06 54.7 13.1 144 680-866 348-499 (644)
461 COG3386 Gluconolactonase [Carb 95.1 3.8 8.3E-05 44.6 21.7 210 640-888 37-264 (307)
462 PF12234 Rav1p_C: RAVE protein 95.1 0.51 1.1E-05 55.7 15.8 125 712-867 31-156 (631)
463 KOG4640 Anaphase-promoting com 95.0 0.11 2.3E-06 59.4 9.5 91 837-929 21-115 (665)
464 PF05694 SBP56: 56kDa selenium 95.0 1.9 4.1E-05 48.2 18.7 203 721-949 86-342 (461)
465 PRK13616 lipoprotein LpqB; Pro 95.0 2.6 5.7E-05 50.4 21.6 203 702-944 341-563 (591)
466 KOG1571 Predicted E3 ubiquitin 95.0 0.011 2.4E-07 62.9 1.7 49 12-64 299-347 (355)
467 TIGR03074 PQQ_membr_DH membran 94.9 8 0.00017 47.7 26.1 212 678-914 194-485 (764)
468 KOG2122 Beta-catenin-binding p 94.9 0.095 2E-06 64.9 9.1 225 192-465 217-468 (2195)
469 PF02897 Peptidase_S9_N: Proly 94.8 9.6 0.00021 43.7 27.7 237 633-911 128-409 (414)
470 COG3490 Uncharacterized protei 94.8 0.57 1.2E-05 48.6 13.1 209 675-905 120-347 (366)
471 KOG3113 Uncharacterized conser 94.8 0.042 9.1E-07 55.2 5.0 54 16-72 109-166 (293)
472 KOG3800 Predicted E3 ubiquitin 94.7 0.021 4.5E-07 58.9 2.8 49 20-68 2-55 (300)
473 PRK13616 lipoprotein LpqB; Pro 94.7 2.3 5E-05 50.8 20.2 191 667-902 348-564 (591)
474 KOG1048 Neural adherens juncti 94.7 0.32 6.8E-06 57.5 12.4 197 183-393 388-658 (717)
475 PHA03098 kelch-like protein; P 94.7 1.7 3.8E-05 51.8 19.5 64 678-743 295-369 (534)
476 KOG2444 WD40 repeat protein [G 94.6 0.087 1.9E-06 53.0 6.8 136 803-948 33-176 (238)
477 PF03224 V-ATPase_H_N: V-ATPas 94.6 0.54 1.2E-05 51.7 13.9 197 170-376 57-274 (312)
478 COG5194 APC11 Component of SCF 94.6 0.034 7.4E-07 45.2 3.1 44 20-64 33-81 (88)
479 KOG1222 Kinesin associated pro 94.6 0.42 9.2E-06 52.8 12.3 250 183-464 277-534 (791)
480 KOG1001 Helicase-like transcri 94.6 0.013 2.7E-07 70.0 0.9 49 19-68 455-504 (674)
481 KOG1493 Anaphase-promoting com 94.5 0.014 3E-07 47.0 0.7 50 15-64 28-81 (84)
482 KOG1897 Damage-specific DNA bi 94.5 7 0.00015 47.6 22.8 137 799-945 838-1000(1096)
483 PF14447 Prok-RING_4: Prokaryo 94.4 0.021 4.6E-07 43.4 1.5 48 17-67 6-53 (55)
484 PF15390 DUF4613: Domain of un 94.4 12 0.00026 43.3 23.4 116 665-788 53-184 (671)
485 PF06433 Me-amine-dh_H: Methyl 94.3 9.8 0.00021 41.5 23.3 168 679-877 148-330 (342)
486 KOG2979 Protein involved in DN 94.3 0.038 8.3E-07 56.2 3.5 44 17-60 175-220 (262)
487 KOG1048 Neural adherens juncti 94.2 0.13 2.8E-06 60.6 8.0 148 164-318 514-671 (717)
488 PF10508 Proteasom_PSMB: Prote 94.1 3.6 7.8E-05 48.5 20.1 195 245-464 118-319 (503)
489 PF02891 zf-MIZ: MIZ/SP-RING z 94.1 0.056 1.2E-06 41.1 3.3 45 18-62 2-50 (50)
490 KOG2122 Beta-catenin-binding p 94.0 0.47 1E-05 59.2 12.3 187 183-383 365-569 (2195)
491 COG5175 MOT2 Transcriptional r 94.0 0.035 7.5E-07 57.8 2.5 52 16-68 13-68 (480)
492 PF07995 GSDH: Glucose / Sorbo 93.9 12 0.00027 41.4 24.5 71 874-944 248-330 (331)
493 KOG2817 Predicted E3 ubiquitin 93.8 0.044 9.6E-07 59.3 2.9 46 17-62 333-383 (394)
494 KOG2160 Armadillo/beta-catenin 93.7 1.4 3E-05 47.8 13.9 188 134-372 94-283 (342)
495 KOG4275 Predicted E3 ubiquitin 93.6 0.013 2.9E-07 59.9 -1.3 43 17-64 299-342 (350)
496 KOG2079 Vacuolar assembly/sort 93.5 0.21 4.6E-06 60.4 8.2 98 638-739 97-202 (1206)
497 PHA03098 kelch-like protein; P 93.5 4.8 0.0001 48.0 20.1 107 636-744 291-418 (534)
498 smart00744 RINGv The RING-vari 93.4 0.089 1.9E-06 39.9 3.3 41 20-60 1-49 (49)
499 PF12894 Apc4_WD40: Anaphase-p 93.4 0.18 4E-06 37.7 4.9 31 919-949 11-41 (47)
500 PHA02790 Kelch-like protein; P 93.3 5.3 0.00012 46.9 19.6 103 639-743 271-387 (480)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-42 Score=347.95 Aligned_cols=305 Identities=20% Similarity=0.303 Sum_probs=268.3
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~ 700 (949)
.+|.+.+-...|+++|.+|++|+.|.++|+||+. +...+..+|...|.|++|+|| .||||+.||+|++||..+|+
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~- 190 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ- 190 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-
Confidence 4455666677888899999999999999999987 578889999999999999998 99999999999999999985
Q ss_pred eeeEEecccCCCEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEE
Q 002234 701 HLIQQIREHTKAVTGLAILQ-----SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fsp-----dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
+....+.+|...|++++|.| ..++|+|+|.||+|+|||+..+. .......|..+|+++. |--+ .++
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvr-------wGG~-gli 261 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVR-------WGGE-GLI 261 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEE-------EcCC-ceE
Confidence 56788999999999999976 46799999999999999999884 4455567788999987 3322 367
Q ss_pred EEEEecCeEEEecC------------CCCceEEEEe-------------C-------------------------CEEEE
Q 002234 776 KVHLRNGKTKLLNS------------SKYPKCLALV-------------Q-------------------------GKVYC 805 (949)
Q Consensus 776 ~~~~~~g~i~~~~~------------~~~v~~v~~~-------------~-------------------------~~l~s 805 (949)
.+++.|+++++|+. ...|+.++.+ + .++++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 78888999999973 3456666654 1 24999
Q ss_pred EECCCcEEEEECCCCc-eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEE
Q 002234 806 GCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRA 883 (949)
Q Consensus 806 gs~Dg~I~iwd~~~~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~ 883 (949)
|++|+++.+|+....+ ++ .++.+|..-|+.+.|+||+.|++++|.|. .|++||.++|+.+.+|. |-..|+.
T Consensus 342 gsDd~tlflW~p~~~kkpi------~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPI------TRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred ecCCceEEEecccccccch------hhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeEE
Confidence 9999999999987655 33 67889999999999999999999999995 99999999999999999 7899999
Q ss_pred EEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 884 MVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 884 l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++|+.| .+++|+.|.+++|||+++.+....+ .||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999 8999999999999999999999999 59999999999999999999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=344.19 Aligned_cols=272 Identities=19% Similarity=0.310 Sum_probs=251.1
Q ss_pred hhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC----EEEEEeCCCcEEEEecCCCceeee
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
.+..+.++.++..|+|||.+|.++||+.. +..+++.+|++.|.++.|+|. .+||++.||++++|++.+. .++
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l 254 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPL 254 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cch
Confidence 34467788899999999999999999988 467889999999999999994 8999999999999999998 799
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
..+.+|...|..++|+|+|++|+|+|.|.+-++||++++. ..+....|...|.+++ |.|||..
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~ia-------f~~DGSL--------- 317 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIA-------FQPDGSL--------- 317 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccch-hhHhhcccccccceeE-------ecCCCce---------
Confidence 9999999999999999999999999999999999999975 4455556788888888 8899875
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+++|+.|..-++||+++|.++ -.+.+|..+|.+|+|+|+|..++++|.|+ +++|
T Consensus 318 -------------------~~tGGlD~~~RvWDlRtgr~i------m~L~gH~k~I~~V~fsPNGy~lATgs~Dn-t~kV 371 (459)
T KOG0272|consen 318 -------------------AATGGLDSLGRVWDLRTGRCI------MFLAGHIKEILSVAFSPNGYHLATGSSDN-TCKV 371 (459)
T ss_pred -------------------eeccCccchhheeecccCcEE------EEecccccceeeEeECCCceEEeecCCCC-cEEE
Confidence 788999999999999999998 45667999999999999999999999997 9999
Q ss_pred EECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 864 WSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 864 wd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
||++..+.+.+++ |..-|..+.|+|. ++++++.|++++||...++.+++++ .||.+.|.+++++||+++++|++.
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred eeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEecc
Confidence 9999999999998 7888999999985 8999999999999999999999999 599999999999999999999999
Q ss_pred CCcEEEEe
Q 002234 940 DGRIQAWG 947 (949)
Q Consensus 940 Dg~I~iWd 947 (949)
|.+|++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=324.59 Aligned_cols=278 Identities=19% Similarity=0.311 Sum_probs=249.2
Q ss_pred CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
.+...+.||.++|.|+.|+|+ .|+||+.|.|+|+||..+. .+..+.++|...|.|++|+|||+.|+||+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 355678899999999999997 9999999999999999999 899999999999999999999999999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec------------CCCCceEEEEe-CCEE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYPKCLALV-QGKV 803 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~------------~~~~v~~v~~~-~~~l 803 (949)
||..+|+..-.....|+..|.++++.|-. ..|..+.+++.+.||.+++|+ |...|+|+.+- ++.+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h--l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH--LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc--cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 99999976666667889999999966643 567888999999999999998 45679999998 5889
Q ss_pred EEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-----------Cce-----------------------
Q 002234 804 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-----------GLV----------------------- 849 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----------~~~----------------------- 849 (949)
++|+.|++|++|+...|.+. +.+.||...|+.++.+. .+.
T Consensus 262 ySgS~DrtIkvw~a~dG~~~------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLC------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EecCCCceEEEEEccchhHH------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 99999999999999999988 78889999999998772 222
Q ss_pred --EEEEEECCCCEEEEEECCC-CeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccccccee
Q 002234 850 --YTASTSLDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 923 (949)
Q Consensus 850 --~l~s~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~ 923 (949)
.+++++.|. ++.+|+... .+++..+. |..-|+.+.|||| ++++++.|..|++||-++|+.+.+|+ ||-+.|.
T Consensus 336 ~erlVSgsDd~-tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDF-TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVY 413 (480)
T ss_pred cceeEEecCCc-eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-hccceeE
Confidence 488888775 999999764 34666666 7889999999999 89999999999999999999999995 9999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 924 CMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 924 ~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.++|+.|.++|++|+.|.++++||+
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEe
Confidence 9999999999999999999999997
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-35 Score=289.57 Aligned_cols=283 Identities=18% Similarity=0.277 Sum_probs=238.4
Q ss_pred HhhHhhhccccccc-cccEEEEecCCCCeEEEecC-------CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEe
Q 002234 625 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 694 (949)
Q Consensus 625 ~~~~~~~~~~~~~~-~~~~l~s~s~dg~I~vWd~~-------~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd 694 (949)
++|...+....... +...+++++.|.++.+|+.. ..++.+.||...|..+..++| +.+|++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 33444333333333 46688999999999999986 257788999999999999997 999999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
+.++ +..+.|.+|+..|.+++|++|.+.++|||.|++|++|++.++....+....+.+.|.++. |+|+...
T Consensus 92 l~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr-------fsP~~~~ 162 (315)
T KOG0279|consen 92 LATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR-------FSPNESN 162 (315)
T ss_pred ecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE-------EcCCCCC
Confidence 9999 899999999999999999999999999999999999999887433333333367777776 7776421
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
..|++++.|++|++||+++-+.. ..+.+|.+.++.+.++|||..+++|
T Consensus 163 --------------------------p~Ivs~s~DktvKvWnl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 163 --------------------------PIIVSASWDKTVKVWNLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred --------------------------cEEEEccCCceEEEEccCCcchh------hccccccccEEEEEECCCCCEEecC
Confidence 14899999999999999988876 6788999999999999999999999
Q ss_pred ECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccc--------cceeEE
Q 002234 855 SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTS--------GKVQCM 925 (949)
Q Consensus 855 s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~--------~~I~~l 925 (949)
+.|| .+.+||++.++.+.++.+...|.+++|+|+ +.+++..+..|+|||.+++..+..+...-. -...++
T Consensus 211 gkdg-~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 211 GKDG-EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred CCCc-eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 9997 999999999999999999999999999999 555666666799999999988877743221 135678
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 926 ALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 926 ~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+||+||..|++|-.||.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999999999999863
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=266.91 Aligned_cols=266 Identities=20% Similarity=0.319 Sum_probs=227.3
Q ss_pred cccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEE
Q 002234 639 EMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 714 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 714 (949)
++-.|+++|.|.+||+|...+ +..+.....+.|..+...|+ .||+++. ..||+||++++...++.++.+|++.|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 456899999999999999874 66777778899999999997 6666655 579999999997779999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCce
Q 002234 715 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 794 (949)
Q Consensus 715 ~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~ 794 (949)
++.|..+|++++|||.||+++|||++.. .+...+.+..+|+++. ..|+..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~vv-------lhpnQt--------------------- 137 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVV-------LHPNQT--------------------- 137 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceEE-------ecCCcc---------------------
Confidence 9999999999999999999999999984 6666677778887776 444432
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe----
Q 002234 795 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---- 870 (949)
Q Consensus 795 ~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~---- 870 (949)
.|++|..+|.|++||+.+..+.... ++....+|.++...||+.+++.+...| ...+|++-+..
T Consensus 138 -------eLis~dqsg~irvWDl~~~~c~~~l-----iPe~~~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 138 -------ELISGDQSGNIRVWDLGENSCTHEL-----IPEDDTSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASE 204 (311)
T ss_pred -------eEEeecCCCcEEEEEccCCcccccc-----CCCCCcceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCcccc
Confidence 4899999999999999988776432 233457899999999999999998876 99999986543
Q ss_pred --eEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC-cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 871 --MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 871 --~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~-~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
++..++ |...+..+.+||| +++++|.|.+++||+.++. +.-..+ .+|...++..+||.||.||+||+.|++++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l-~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL-TGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe-ecCCceEEeeeeccCccEEEecCCCCcee
Confidence 445555 7889999999999 8999999999999999988 555555 58999999999999999999999999999
Q ss_pred EEeCC
Q 002234 945 AWGLS 949 (949)
Q Consensus 945 iWdl~ 949 (949)
+||+.
T Consensus 284 lW~~~ 288 (311)
T KOG0315|consen 284 LWDLS 288 (311)
T ss_pred ecccc
Confidence 99974
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=269.77 Aligned_cols=280 Identities=16% Similarity=0.301 Sum_probs=245.6
Q ss_pred HHHhhHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC
Q 002234 623 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~ 698 (949)
++++|..-+....++.|.+++++++.||.+.|||.- +..+...-....|...+|+|. ++|+|+-|+...||++.+.
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 345555555566778899999999999999999976 456667777899999999995 9999999999999999854
Q ss_pred ----ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCC
Q 002234 699 ----ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGA 773 (949)
Q Consensus 699 ----~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~ 773 (949)
..+..+.+.+|++.+.|+.|-+| ..|+|+|.|.+..+||+++++ +....+.|.+.|.++. ++| +++
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~sls-------l~p~~~n 200 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLS-------LSPSDGN 200 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce-EEEEecCCcccEEEEe-------cCCCCCC
Confidence 23566789999999999999875 568999999999999999996 5566667888888887 556 444
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
.+++|+.|++.++||++.+.+. ..|.+|...|++|.|+|+|.-+++
T Consensus 201 ----------------------------tFvSg~cD~~aklWD~R~~~c~------qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 201 ----------------------------TFVSGGCDKSAKLWDVRSGQCV------QTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred ----------------------------eEEecccccceeeeeccCccee------EeecccccccceEEEccCCCeeee
Confidence 4899999999999999999988 678899999999999999999999
Q ss_pred EECCCCEEEEEECCCCeeEEeecC---CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 854 TSLDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
++.|+ +.++||++..+.+..+.+ ..+|++++||-. ++++|..|.++.|||.-.++.+..+ .||.+.|+++..+
T Consensus 247 GSDD~-tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~s 324 (343)
T KOG0286|consen 247 GSDDA-TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRVSCLGVS 324 (343)
T ss_pred cCCCc-eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-eccCCeeEEEEEC
Confidence 99886 999999999999988885 467999999865 8999999999999999999999999 5999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEe
Q 002234 929 DNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 929 pdg~~L~sgs~Dg~I~iWd 947 (949)
|||.-++||+.|.+++||.
T Consensus 325 ~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 325 PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCcEEEecchhHheeecC
Confidence 9999999999999999994
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=290.69 Aligned_cols=238 Identities=20% Similarity=0.317 Sum_probs=215.8
Q ss_pred cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 002234 665 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~ 740 (949)
.+.+.+|..+.|+.| .|+|||.+|.++||+..+. ..+.+|.+|++.|.++.|+|. +..++||+.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 356788999999986 9999999999999999998 899999999999999999995 6799999999999999999
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 820 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~ 820 (949)
+.. .......|...|..+. |.|+|++ |.++|.|.+=++||+.++
T Consensus 250 ~e~-~l~~l~gH~~RVs~Va-------fHPsG~~----------------------------L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 250 QET-PLQDLEGHLARVSRVA-------FHPSGKF----------------------------LGTASFDSTWRLWDLETK 293 (459)
T ss_pred CCc-chhhhhcchhhheeee-------ecCCCce----------------------------eeecccccchhhcccccc
Confidence 863 2223334567777777 9999986 889999999999999999
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECC
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG 897 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~d 897 (949)
... ....||...|.+++|++||.++++|+.|. .-+|||+++++++..+. |...|.+++|+|+ .+++|+.|
T Consensus 294 ~El------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 294 SEL------LLQEGHSKGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred hhh------HhhcccccccceeEecCCCceeeccCccc-hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC
Confidence 887 56789999999999999999999999995 99999999999999999 7899999999999 69999999
Q ss_pred CeEEEEECCCCcEEEEeccccccceeEEEEeC-CCCEEEEEeCCCcEEEEeC
Q 002234 898 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 898 g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~iWdl 948 (949)
++++|||++....+.++ .+|.+-|+.|.|+| .|.+|+|++.|++++||.-
T Consensus 367 nt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred CcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 99999999999999999 59999999999999 7899999999999999963
No 8
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=283.66 Aligned_cols=265 Identities=22% Similarity=0.360 Sum_probs=228.1
Q ss_pred cccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccC
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 710 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 710 (949)
.--+++|...+++|..|++|+|||.. .+...+.||+|.|.|+.|....++||+.|.||+|||++++ +++.++-+|.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--e~l~tlihHc 277 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--EPLNTLIHHC 277 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC--chhhHHhhhc
Confidence 34477889999999999999999998 5788999999999999999999999999999999999999 8999999999
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
..|..+.|+. .+++|+|.|.++.+||+.... .+.... .+..|.
T Consensus 278 eaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-----------~it~rr------------------------VLvGHr 320 (499)
T KOG0281|consen 278 EAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-----------DITLRR------------------------VLVGHR 320 (499)
T ss_pred ceeEEEEEeC--CEEEEecCCceeEEEeccCch-----------HHHHHH------------------------HHhhhh
Confidence 9999999974 599999999999999998742 111000 011234
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
..|..+.|++.++++++.|.+|++|++.++.++ +.+.+|...|-|+.+. +.++++||.|. +|++||+..|.
T Consensus 321 AaVNvVdfd~kyIVsASgDRTikvW~~st~efv------Rtl~gHkRGIAClQYr--~rlvVSGSSDn-tIRlwdi~~G~ 391 (499)
T KOG0281|consen 321 AAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFV------RTLNGHKRGIACLQYR--DRLVVSGSSDN-TIRLWDIECGA 391 (499)
T ss_pred hheeeeccccceEEEecCCceEEEEeccceeee------hhhhcccccceehhcc--CeEEEecCCCc-eEEEEeccccH
Confidence 456666777778999999999999999999998 7888899888887764 67899999996 99999999999
Q ss_pred eEEeec-CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCc---------EEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 871 MVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 871 ~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~---------~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
+++.+. |..-|.++.|+...+++|..||+|+|||+.++. ++.++ ..|++.|..+.|. ...+++++.|
T Consensus 392 cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEHSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhh-hhccceeEEEeec--ceEEEeccCC
Confidence 999999 677899999999999999999999999998764 23334 4688999999994 6789999999
Q ss_pred CcEEEEeC
Q 002234 941 GRIQAWGL 948 (949)
Q Consensus 941 g~I~iWdl 948 (949)
.+|.|||+
T Consensus 469 dtILiWdF 476 (499)
T KOG0281|consen 469 DTILIWDF 476 (499)
T ss_pred CeEEEEEc
Confidence 99999997
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-30 Score=275.58 Aligned_cols=323 Identities=19% Similarity=0.298 Sum_probs=251.9
Q ss_pred HHHHHhhHhhhccccccccccEEEEecCCCCeEEEecCC--ceeeec---CCCCceEEEEEeCC--EEEEEeCCCcEEEE
Q 002234 621 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVW 693 (949)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~---~h~~~V~~l~~s~d--~lasgs~Dg~I~vW 693 (949)
+...+.|.++++..-+++||+++++.|.||+|.+||-.+ .+..+. +|++.|.+++|+|| .++|++.|.+++||
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 445677888999999999999999999999999999874 344444 89999999999998 99999999999999
Q ss_pred ecCCCce-----------------------------------------eeeEEecccCCCEEEEEEecCCCEEEEEeCCC
Q 002234 694 TGRGSIL-----------------------------------------HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 732 (949)
Q Consensus 694 d~~t~~~-----------------------------------------~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg 732 (949)
|+.+++. ..+..+.||.+.|+++..+||+++|+||+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 9987621 11233468999999999999999999999999
Q ss_pred cEEEEECCCCeeEEEEeecCCCceeeeeecc-----------------------------------ceEEEEeCCCEEEE
Q 002234 733 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSN-----------------------------------SILCFIPQGAGIKV 777 (949)
Q Consensus 733 ~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~-----------------------------------~~~~fsp~g~~l~~ 777 (949)
.|.-||..+|....+....|...|.++.... ..++..+++...++
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 9999999887533333333444444443221 12333334333333
Q ss_pred EEecCeEEEec--------CCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC
Q 002234 778 HLRNGKTKLLN--------SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 847 (949)
Q Consensus 778 ~~~~g~i~~~~--------~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 847 (949)
...++.+-+-+ ..-...++++++ ..+++|+.||.|++|.+..+..... .....|..+|++++++||
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----AKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----eeeecccCCceEEEECCC
Confidence 33333222222 123456777776 4599999999999999988765422 356779999999999999
Q ss_pred ceEEEEEECCCCEEEEEECCCCeeEEe-ec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccccccee
Q 002234 848 LVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 923 (949)
Q Consensus 848 ~~~l~s~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~ 923 (949)
+.|++++...+ .+.+||+.+...... +. |...|.+++|+|+ .+++|+-|..|.||+++.......++..|...|+
T Consensus 499 ~~yla~~Da~r-kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn 577 (603)
T KOG0318|consen 499 GAYLAAGDASR-KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVN 577 (603)
T ss_pred CcEEEEeccCC-cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCce
Confidence 99999998775 999999998776322 22 8899999999999 8999999999999999987766777789999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 924 CMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 924 ~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+.|- |...+++.+.|..|++|++.
T Consensus 578 ~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 578 SVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEe-cCceEEeccCcceeEEeccc
Confidence 99995 56789999999999999874
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=293.11 Aligned_cols=318 Identities=19% Similarity=0.257 Sum_probs=257.0
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC----EEEEEeCCCcEEEEecCCCceee
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
..+-...+.+.+..+++||.|+.++|||+. .+.+.+.||.|.|.++.|+|+ .|++|..|+++++||+.+.. .+
T Consensus 106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~-tc 184 (775)
T KOG0319|consen 106 APVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR-TC 184 (775)
T ss_pred CCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc-hH
Confidence 334445566677899999999999999998 578899999999999999996 78999999999999999764 47
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEEE----------ee---------------------
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQ----------VH--------------------- 750 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~-~~~~~----------~~--------------------- 750 (949)
+.++..|.+.|++++|++|+..++++|.|..+.+||+.+-+ ...+. ..
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~ 264 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY 264 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence 88999999999999999999999999999999999984321 00000 00
Q ss_pred --------------------------------------------------------cCCCceeeeeeccc----------
Q 002234 751 --------------------------------------------------------DIKDQIQNLAVSNS---------- 764 (949)
Q Consensus 751 --------------------------------------------------------~~~~~v~~l~~~~~---------- 764 (949)
...+.|.++.+-++
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 00011111111110
Q ss_pred -----------------------e--EEEEeCCCEEEEEEecCeEEEec----------------CCCCceEEEEeC---
Q 002234 765 -----------------------I--LCFIPQGAGIKVHLRNGKTKLLN----------------SSKYPKCLALVQ--- 800 (949)
Q Consensus 765 -----------------------~--~~fsp~g~~l~~~~~~g~i~~~~----------------~~~~v~~v~~~~--- 800 (949)
. .....+|..+++++.|.++.+|. |...|.+++++.
T Consensus 345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 0 11124466788899999999994 456688888864
Q ss_pred CEEEEEECCCcEEEEECCCCcee---eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFA---TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP- 876 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~- 876 (949)
..++++|.|+++++|++...+.. ..+........|...|++++++|+..+++++|.| ++.+||++.......++.
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD-ktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD-KTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc-cceeeecccCceEEEEeeC
Confidence 45999999999999999873322 1122223456799999999999999999999999 599999999999999999
Q ss_pred CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 877 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|...++++.|+++ .++++|.|++|+||.+.+..++++| .||...|..+.|-.+|+.|++++.||-|++|++.
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 7889999999998 8999999999999999999999999 5999999999999999999999999999999974
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=271.60 Aligned_cols=284 Identities=20% Similarity=0.309 Sum_probs=245.0
Q ss_pred HHHHHHHHhhHhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEE
Q 002234 618 IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 693 (949)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vW 693 (949)
..+..+.++|...++...+.+...++++|+.|++|+|||+.+ ....+.||-..|..+++|+. |+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 345567788888999999999999999999999999999984 56678899999999999985 99999999999999
Q ss_pred ecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC
Q 002234 694 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 694 d~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~ 773 (949)
|++.+ +.++.+.||-..|.|++.+|.-+.|+||+.|.++||||+++.. .......|..+|.++. +.|.
T Consensus 221 DLe~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~-------~~~~-- 288 (460)
T KOG0285|consen 221 DLEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVM-------CQPT-- 288 (460)
T ss_pred echhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEE-------eecC--
Confidence 99999 8999999999999999999999999999999999999999963 3333334556666554 2221
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
+..+++|+.|++|++||++.|+.. ..+..|...|.+++.+|....+++
T Consensus 289 --------------------------dpqvit~S~D~tvrlWDl~agkt~------~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 289 --------------------------DPQVITGSHDSTVRLWDLRAGKTM------ITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred --------------------------CCceEEecCCceEEEeeeccCcee------EeeecccceeeEEecCCchhhhhc
Confidence 345999999999999999999987 456678899999999999999999
Q ss_pred EECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEecc----c---cccceeE
Q 002234 854 TSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT----G---TSGKVQC 924 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~----~---h~~~I~~ 924 (949)
++.| .|+-|++..+..+..+. |...+++++.+.| .+++|+++|.+.+||.++|...+..+. | ....|.+
T Consensus 337 as~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~a 414 (460)
T KOG0285|consen 337 ASPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFA 414 (460)
T ss_pred cCCc--cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeE
Confidence 9998 59999999999998887 7788999999888 899999999999999999876555421 1 2236899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEe
Q 002234 925 MALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 925 l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
.+|...|..|+||..|.+|++|.
T Consensus 415 s~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 415 SCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EeecccCceEEeccCCcceEEEe
Confidence 99999999999999999999996
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=259.62 Aligned_cols=277 Identities=22% Similarity=0.307 Sum_probs=235.5
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecC---CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 699 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~ 699 (949)
.+|...+....|.++|..+++||.|..|-+|+.. +...++.+|.++|..+.|.+| .++|++.|.+|+.||+++|
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG- 122 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG- 122 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc-
Confidence 4555667778888899999999999999999965 345677899999999999987 9999999999999999999
Q ss_pred eeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 700 LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
++++.+++|++.|+++.-+.- ..++.||+.||++++||+++. ......+.+.+++++. |..++.
T Consensus 123 -~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--~~~~t~~~kyqltAv~-------f~d~s~----- 187 (338)
T KOG0265|consen 123 -KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--EAIKTFENKYQLTAVG-------FKDTSD----- 187 (338)
T ss_pred -eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--chhhccccceeEEEEE-------eccccc-----
Confidence 899999999999999984443 457889999999999999985 4444554455555555 444443
Q ss_pred EecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC
Q 002234 779 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 858 (949)
Q Consensus 779 ~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg 858 (949)
.+++|+-|+.|++||++.+... ..+.||..+|+.+..++++.++.+-+.|.
T Consensus 188 -----------------------qv~sggIdn~ikvWd~r~~d~~------~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 188 -----------------------QVISGGIDNDIKVWDLRKNDGL------YTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred -----------------------ceeeccccCceeeeccccCcce------EEeecccCceeeEEeccCCCccccccccc
Confidence 4889999999999999998887 56778999999999999999999999996
Q ss_pred CEEEEEECCC----CeeEEeecC-----CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEE
Q 002234 859 AAVKMWSTSN----YNMVGSLPT-----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 859 ~~I~iwd~~~----~~~~~~~~~-----~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~ 927 (949)
++++||++. .+++..+.+ .......+|+|+ ++-+|+.|..+++||..+...+..+ .||.+.|.+++|
T Consensus 239 -tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh~gsvn~~~F 316 (338)
T KOG0265|consen 239 -TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGHYGSVNEVDF 316 (338)
T ss_pred -eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCcceeEEEeee
Confidence 999999975 345666652 245667889998 7889999999999999998999999 699999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl 948 (949)
+|...+|.+++.|.+|++=.+
T Consensus 317 hp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 317 HPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCcEEEEeccCceeEeecc
Confidence 999999999999999987544
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.6e-32 Score=277.70 Aligned_cols=269 Identities=17% Similarity=0.290 Sum_probs=232.7
Q ss_pred cccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
..-..++|..|++|+..|.+.+|+... ...+++.|..+|+++.|+++ +++||+.+|.|++|+.+-+ -++.++.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~a 177 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQA 177 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhH
Confidence 444667999999999999999999873 34567899999999999996 9999999999999999876 4555555
Q ss_pred cC-CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 709 HT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 709 H~-~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
|. ..|.+++|+|+...++|+|.||+|+|||....+...+ ...|.-.|.++. |.|.-
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-L~GHgwdVksvd-------WHP~k--------------- 234 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-LRGHGWDVKSVD-------WHPTK--------------- 234 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-eccCCCCcceec-------cCCcc---------------
Confidence 55 9999999999989999999999999999987642211 133344444444 33332
Q ss_pred cCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 788 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
+.+++|+.|..|++||.+++.++ ..+.+|...|..+.|++++.+++++|.|. .++++|++
T Consensus 235 -------------gLiasgskDnlVKlWDprSg~cl------~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR 294 (464)
T KOG0284|consen 235 -------------GLIASGSKDNLVKLWDPRSGSCL------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIR 294 (464)
T ss_pred -------------ceeEEccCCceeEeecCCCcchh------hhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehh
Confidence 35899999999999999999998 67788999999999999999999999995 99999999
Q ss_pred CCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcE
Q 002234 868 NYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 943 (949)
Q Consensus 868 ~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 943 (949)
+.+.+.++. |...++++.|+|- .+.+|+.||.|..|.+...+++..+..+|...|++++|+|=|..|++|+.|.++
T Consensus 295 ~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 295 TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTV 374 (464)
T ss_pred HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcce
Confidence 888888888 8899999999875 899999999999999998889999988999999999999999999999999999
Q ss_pred EEEe
Q 002234 944 QAWG 947 (949)
Q Consensus 944 ~iWd 947 (949)
++|.
T Consensus 375 rfw~ 378 (464)
T KOG0284|consen 375 RFWT 378 (464)
T ss_pred eeec
Confidence 9995
No 14
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.9e-31 Score=269.99 Aligned_cols=291 Identities=17% Similarity=0.241 Sum_probs=238.8
Q ss_pred cchhhHHHHHHHHHHhhHhhhccccccccccEEEEecCCCCeEEEecC-----CceeeecCCCCceEEEEEeCC--EEEE
Q 002234 611 QGLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFS 683 (949)
Q Consensus 611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~~s~d--~las 683 (949)
.+...+....+.++..|..-+.+..|+.+|.|||+++.|.+..+|++. ....++.+|..+|..+.|||| ++++
T Consensus 207 c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred cCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence 445556677888889999999999999999999999999999999876 356788999999999999997 9999
Q ss_pred EeCCCcEEEEecCCCceeeeEEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeec
Q 002234 684 GHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 684 gs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~ 762 (949)
++.|..+++||+.+| .+...+. +|...+.+++|.|||..+++|+.|+++..||++........... ...|.+++
T Consensus 287 Cg~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dla-- 361 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLA-- 361 (519)
T ss_pred cCchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEE--
Confidence 999999999999999 5555553 35688999999999999999999999999999886422222211 13455665
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
.++||++ +++.+.|..|++|+..+.... .+.....+|+++
T Consensus 362 -----it~Dgk~----------------------------vl~v~~d~~i~l~~~e~~~dr-------~lise~~~its~ 401 (519)
T KOG0293|consen 362 -----ITYDGKY----------------------------VLLVTVDKKIRLYNREARVDR-------GLISEEQPITSF 401 (519)
T ss_pred -----EcCCCcE----------------------------EEEEecccceeeechhhhhhh-------ccccccCceeEE
Confidence 6777775 666678999999998876553 233344799999
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC---CcEEEEEEcC---CEEEEEECCCeEEEEECCCCcEEEEecc
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSS---ELVYLGCKGGTVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~---d~l~sgs~dg~I~vwd~~~~~~~~~l~~ 916 (949)
..+.++.++.+.-.+. .+.+||+.....++.+.++ ..+..-+|-. +++++||+|+.|+||+..+|+++..+ .
T Consensus 402 ~iS~d~k~~LvnL~~q-ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-s 479 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQ-EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-S 479 (519)
T ss_pred EEcCCCcEEEEEcccC-eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-c
Confidence 9999999988877774 9999999988888877732 2344444532 39999999999999999999999999 6
Q ss_pred ccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 002234 917 GTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl 948 (949)
||...|++++|+|.. .++|+||+||+|+||..
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 999999999999966 67899999999999975
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=5e-30 Score=253.14 Aligned_cols=244 Identities=21% Similarity=0.291 Sum_probs=208.7
Q ss_pred eeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCce---eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcE
Q 002234 661 VHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 734 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~---~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I 734 (949)
..++.+|++.|+.++..+ +.+++++.|.++.+|++..... .+++.++||...|..+..++||++.+|+|.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 457889999999999886 4999999999999998864322 5688999999999999999999999999999999
Q ss_pred EEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 735 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
++||+.+++ .......|...|.+++ |++|.+. +++|+.|.+|++
T Consensus 88 rlWDl~~g~-~t~~f~GH~~dVlsva-------~s~dn~q----------------------------ivSGSrDkTikl 131 (315)
T KOG0279|consen 88 RLWDLATGE-STRRFVGHTKDVLSVA-------FSTDNRQ----------------------------IVSGSRDKTIKL 131 (315)
T ss_pred EEEEecCCc-EEEEEEecCCceEEEE-------ecCCCce----------------------------eecCCCcceeee
Confidence 999999985 4455556677788877 7777764 899999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCC--ceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-- 889 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-- 889 (949)
||+..+...... -.++...|+++.|+|+ ..++++++.|+ +|++||+++.+...++. |.+.++.+++|||
T Consensus 132 wnt~g~ck~t~~-----~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 132 WNTLGVCKYTIH-----EDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred eeecccEEEEEe-----cCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 998866544321 1223789999999998 78999999995 99999999999988888 7889999999999
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 890 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 890 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
..++|+.||.+.+||++.++.++.+ +|...|.+++|+|+.-.|+.+. +..|+|||+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLE 262 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEecc
Confidence 7889999999999999999999998 4888999999999876666655 5569999974
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=264.80 Aligned_cols=277 Identities=21% Similarity=0.306 Sum_probs=244.9
Q ss_pred EEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC
Q 002234 654 FWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL 730 (949)
Q Consensus 654 vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~ 730 (949)
.|-+. ...+.+.+|..+|+.+-|+|+ .+++++.|++|++||..++ ++...++||++.|..+.|+..|++++++|.
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCC
Confidence 46665 566778889999999999998 8888999999999999999 779999999999999999999999999999
Q ss_pred CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec------------CCCCceEEEE
Q 002234 731 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYPKCLAL 798 (949)
Q Consensus 731 Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~------------~~~~v~~v~~ 798 (949)
|-.+++||..+....+.....|+..|.++. |-|.|.++++.+.|.+++.|+ +...|+.+..
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~-------f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVF-------FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEE-------EEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 999999999875323333445677787777 999999999999999999997 3456888888
Q ss_pred eCCE--EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC---------------ceEEEEEECCCCEE
Q 002234 799 VQGK--VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---------------LVYTASTSLDGAAV 861 (949)
Q Consensus 799 ~~~~--l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---------------~~~l~s~s~Dg~~I 861 (949)
..+. +++++.|.++++|-..++++. ..+.+|.-+|-+++|-|. +.++++++.|+ +|
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tI 316 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCK------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TI 316 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhh------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eE
Confidence 7533 788899999999999999877 566778889999998652 36899999996 99
Q ss_pred EEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEe
Q 002234 862 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 862 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
++||+.++.++.++. |...|..++|+|. ||+++.+|++++|||+++++++.++. .|...|++++|+.+..+++||+
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEecc
Confidence 999999999999998 7899999999977 99999999999999999999999995 8999999999999999999999
Q ss_pred CCCcEEEEe
Q 002234 939 SDGRIQAWG 947 (949)
Q Consensus 939 ~Dg~I~iWd 947 (949)
-|.++++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999996
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.2e-30 Score=291.07 Aligned_cols=238 Identities=21% Similarity=0.339 Sum_probs=207.2
Q ss_pred CCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc-----------------------------eeeeEEecccCCCEEEE
Q 002234 668 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-----------------------------LHLIQQIREHTKAVTGL 716 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~-----------------------------~~~i~~l~~H~~~V~~v 716 (949)
...++|..|++| ++|.|..|..|++|.+...+ -....++.||+++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 445666777765 66666677777777655210 03445688999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEE
Q 002234 717 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCL 796 (949)
Q Consensus 717 ~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v 796 (949)
.|+|+.++|+|+|.|++||+|.+.+.. ..+....|..||+.+. |+|.|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~-------F~P~GyY---------------------- 507 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQ-------FAPRGYY---------------------- 507 (707)
T ss_pred eecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEE-------ecCCceE----------------------
Confidence 999999999999999999999999975 3444457889999998 8888764
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 797 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 797 ~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
+++++.|++-++|........ +.+.+|-..|.|+.|||+..|+++||.| +++++||+.+|..++.|.
T Consensus 508 ------Fatas~D~tArLWs~d~~~Pl------RifaghlsDV~cv~FHPNs~Y~aTGSsD-~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 508 ------FATASHDQTARLWSTDHNKPL------RIFAGHLSDVDCVSFHPNSNYVATGSSD-RTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred ------EEecCCCceeeeeecccCCch------hhhcccccccceEEECCcccccccCCCC-ceEEEEEcCCCcEEEEec
Confidence 889999999999999887766 7888999999999999999999999988 599999999999999999
Q ss_pred -CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 877 -TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 877 -~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|.++|.+++|||+ ++++|+.||.|.+||+.++.++..+. +|.+.|.++.||.||..||+||.|++|++||+.
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 7899999999999 89999999999999999999999995 899999999999999999999999999999973
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.9e-29 Score=264.15 Aligned_cols=319 Identities=16% Similarity=0.237 Sum_probs=237.2
Q ss_pred hhHhhhccccccc-cccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce
Q 002234 626 GLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 626 ~~~~~~~~~~~~~-~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~ 700 (949)
+|.+.+..+.+.+ .+-+++|+|.|++|-+|+-. .....+..|..-|.|+.|+|| +++|.+.||+|.+||-.++
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-- 222 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-- 222 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--
Confidence 4445555555554 56689999999999999876 345667789999999999998 9999999999999999999
Q ss_pred eeeEEec---ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCce--------------eeeeecc
Q 002234 701 HLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI--------------QNLAVSN 763 (949)
Q Consensus 701 ~~i~~l~---~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v--------------~~l~~~~ 763 (949)
+.+..+. +|++.|.+++|+||++.++|+|.|++++|||+.++++. ........+ -.+....
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv--~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV--STWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE--EEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 7888887 89999999999999999999999999999999987522 211111111 1111000
Q ss_pred -----------------------ceEEEEeCCCEEEEEEecCeEEEecCCC-------------CceEEEEeC-CEEEEE
Q 002234 764 -----------------------SILCFIPQGAGIKVHLRNGKTKLLNSSK-------------YPKCLALVQ-GKVYCG 806 (949)
Q Consensus 764 -----------------------~~~~fsp~g~~l~~~~~~g~i~~~~~~~-------------~v~~v~~~~-~~l~sg 806 (949)
.....+|+++++.+++.||.+.-|+... .|.+++... +.+++.
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 0233566667777777777777776421 245555555 567777
Q ss_pred ECCCcEEEEECCCCceeee--------------ecc----------c-ccccC--------CCCCEEEEEEeCCceEEEE
Q 002234 807 CQDGAIQEIDLATGTFATI--------------QTG----------H-RKLLG--------KANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~--------------~~~----------~-~~~~~--------h~~~V~~l~~~~~~~~l~s 853 (949)
+.|.++++.++..+..... ... + ..+.. -.....+++++|++..++.
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 7777777765532211100 000 0 00111 1234568899999999999
Q ss_pred EECCCCEEEEEECCCCeeE---EeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 854 TSLDGAAVKMWSTSNYNMV---GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~---~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
|+.|+ .|++|.+...... ....|...++++++||| ++++|...+.+.+||+.+.+.......-|...|.+++|+
T Consensus 461 GG~Dg-kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 461 GGQDG-KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred ecccc-eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence 99997 8999999875532 44558999999999999 899999999999999999887544445699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 002234 929 DNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 929 pdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|++.++|||+-|..|.||+++
T Consensus 540 P~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCceEEEeccccceEEEEEcc
Confidence 999999999999999999974
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=4.4e-30 Score=269.62 Aligned_cols=260 Identities=24% Similarity=0.373 Sum_probs=220.9
Q ss_pred cEEEEecCCCCeEEEecCC------ceeee----------cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 641 VKVLSNGHDSSADFWNHRE------LVHVD----------SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~------~~~~~----------~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
..+++|+.|.+.++|++.. ....+ ...+..|++++|+.+ .||+|+.||.+++|+...+ .
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l 268 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---L 268 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch---h
Confidence 3788999999999999863 11111 112468999999965 9999999999999999876 7
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
+.++..|.++|.++.|+.+|++|++++.||++.+||..+|+......+ +..+-.++. |-
T Consensus 269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-~s~~~lDVd-------W~------------- 327 (524)
T KOG0273|consen 269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-HSAPALDVD-------WQ------------- 327 (524)
T ss_pred hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-ccCCccceE-------Ee-------------
Confidence 889999999999999999999999999999999999999853222221 122212222 21
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
+++.+++.+.||.|+++.+....++ .++.+|.++|.++.|+|.+.+++++|.|+ +++
T Consensus 328 ----------------~~~~F~ts~td~~i~V~kv~~~~P~------~t~~GH~g~V~alk~n~tg~LLaS~SdD~-Tlk 384 (524)
T KOG0273|consen 328 ----------------SNDEFATSSTDGCIHVCKVGEDRPV------KTFIGHHGEVNALKWNPTGSLLASCSDDG-TLK 384 (524)
T ss_pred ----------------cCceEeecCCCceEEEEEecCCCcc------eeeecccCceEEEEECCCCceEEEecCCC-eeE
Confidence 1235899999999999999888877 67788999999999999999999999987 999
Q ss_pred EEECCCCeeEEeec-CCCcEEEEEEcCC-----------EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 863 MWSTSNYNMVGSLP-TLSEVRAMVVSSE-----------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 863 iwd~~~~~~~~~~~-~~~~v~~l~~s~d-----------~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
||+.........+. |...|+.+.|+|+ .+++++.|++|++||+..+.++++| ..|..+|.+++|||+
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPN 463 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCC
Confidence 99999988888888 7889999999985 5899999999999999999999999 589999999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 002234 931 EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 931 g~~L~sgs~Dg~I~iWdl 948 (949)
|+++++|+.||.|.+|++
T Consensus 464 g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWST 481 (524)
T ss_pred CcEEEecCCCCeeEeccc
Confidence 999999999999999986
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=247.46 Aligned_cols=265 Identities=19% Similarity=0.284 Sum_probs=214.7
Q ss_pred ccEEEEecCCCCeEEEecCC-----cee-eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 640 MVKVLSNGHDSSADFWNHRE-----LVH-VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~-----~~~-~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
|..|+++|.|+.||+|+... +.. ...+|+..|.+++|+|. +|++||.|.++.||.-..++++++.++.||.+
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 67899999999999999873 222 23479999999999995 99999999999999999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
.|.|++|+++|++||++|+|++|-||.+..+. ..+.... +|...
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD---------------------------------- 152 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD---------------------------------- 152 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc----------------------------------
Confidence 99999999999999999999999999988542 3333332 23333
Q ss_pred CCCceEEEEeC--CEEEEEECCCcEEEEECC-CCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 790 SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 790 ~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
|+.+.++| +.|++++.|++|++|+-. .+..... ..+.+|...|.+++|++.|..+++++.|+ +++||..
T Consensus 153 ---VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~----~tl~g~~~TVW~~~F~~~G~rl~s~sdD~-tv~Iw~~ 224 (312)
T KOG0645|consen 153 ---VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV----QTLDGHENTVWSLAFDNIGSRLVSCSDDG-TVSIWRL 224 (312)
T ss_pred ---ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEE----EEecCccceEEEEEecCCCceEEEecCCc-ceEeeee
Confidence 44444444 459999999999999876 3332221 56788999999999999999999999886 9999986
Q ss_pred CCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCC------cEEEEeccccccceeEEEEeCC-CCEEEEEeC
Q 002234 867 SNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQ------IRIETLQTGTSGKVQCMALDDN-EEFLVIGTS 939 (949)
Q Consensus 867 ~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~------~~~~~l~~~h~~~I~~l~~spd-g~~L~sgs~ 939 (949)
.+. -...|...++.+.|..+.|++++.|+.|++|.-... +.+......|...|++++|+|. .+.|++|++
T Consensus 225 ~~~---~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 225 YTD---LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD 301 (312)
T ss_pred ccC---cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC
Confidence 521 112256789999999669999999999999976542 2333344578889999999995 689999999
Q ss_pred CCcEEEEeCC
Q 002234 940 DGRIQAWGLS 949 (949)
Q Consensus 940 Dg~I~iWdl~ 949 (949)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999863
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.2e-31 Score=268.52 Aligned_cols=232 Identities=28% Similarity=0.450 Sum_probs=202.6
Q ss_pred CCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 667 ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 667 h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
....|+|+.|..+.++||..|+||+|||.++. .+++.+.||++.|.|+.|. .+.++|||.|.||+|||+++|++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~-- 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP-- 269 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch--
Confidence 46789999999999999999999999999988 8999999999999999984 56999999999999999999852
Q ss_pred EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeee
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 826 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 826 (949)
+... +.|...|..+.|++|.+++++.|.+|.+||+.+...+.
T Consensus 270 l~tl------------------------------------ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it-- 311 (499)
T KOG0281|consen 270 LNTL------------------------------------IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDIT-- 311 (499)
T ss_pred hhHH------------------------------------hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHH--
Confidence 2111 12233455566778899999999999999998876432
Q ss_pred cccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCCEEEEEECCCeEEEEEC
Q 002234 827 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 827 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~ 905 (949)
..+.+.||...|+.+.|+.. |++++|.| ++|++|++.++..++++. |...|-|+.+...++++|+.|++|++||+
T Consensus 312 -~rrVLvGHrAaVNvVdfd~k--yIVsASgD-RTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 312 -LRRVLVGHRAAVNVVDFDDK--YIVSASGD-RTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred -HHHHHhhhhhheeeeccccc--eEEEecCC-ceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEec
Confidence 12578899999999999865 88888888 699999999999999999 77889999999999999999999999999
Q ss_pred CCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 906 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 906 ~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.|.++..+ .||..-|.++.|. .+.+++|+.||+|+|||+.
T Consensus 388 ~~G~cLRvL-eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 388 ECGACLRVL-EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cccHHHHHH-hchHHhhhheeec--CceeeeccccceEEEEecc
Confidence 999999999 4999999999994 7889999999999999973
No 22
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.7e-31 Score=253.49 Aligned_cols=269 Identities=20% Similarity=0.321 Sum_probs=234.7
Q ss_pred cccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
++|+.++|.+|++++.|+.-.+-+-+ ..+-++.+|.+.|++...+.| .-++++.|-+-+|||.-+| ..+..|.
T Consensus 22 ~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf~- 98 (334)
T KOG0278|consen 22 FSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSFE- 98 (334)
T ss_pred ccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhhh-
Confidence 68888999999999999987666544 568899999999999999998 8889999999999999999 7888884
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
|..-|.+++|+.|.++|++|+.++.+||+|++..+-.......|.+.|..+. |....
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~-------wc~eD---------------- 155 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL-------WCHED---------------- 155 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE-------EeccC----------------
Confidence 9999999999999999999999999999999987644444445555555554 33322
Q ss_pred CCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC
Q 002234 789 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 868 (949)
Q Consensus 789 ~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~ 868 (949)
..+++++.|++|++||.+++..+..+. ...+|+++.+++++.++..+ +|+.|++||..+
T Consensus 156 ------------~~iLSSadd~tVRLWD~rTgt~v~sL~-------~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaks 214 (334)
T KOG0278|consen 156 ------------KCILSSADDKTVRLWDHRTGTEVQSLE-------FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKS 214 (334)
T ss_pred ------------ceEEeeccCCceEEEEeccCcEEEEEe-------cCCCCcceeeccCCCEEEEe--cCceeEEecccc
Confidence 347888999999999999999886543 23689999999999998776 467999999999
Q ss_pred CeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 869 YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 869 ~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
..+++.+.....|.+...+|+ .+++|+.|..++.||..++..+..+..+|.++|.|+.|+|||...++|+.||+|++|
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 999999999999999999998 899999999999999999999999867999999999999999999999999999999
Q ss_pred eC
Q 002234 947 GL 948 (949)
Q Consensus 947 dl 948 (949)
..
T Consensus 295 Qt 296 (334)
T KOG0278|consen 295 QT 296 (334)
T ss_pred Ee
Confidence 75
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=9.6e-29 Score=252.36 Aligned_cols=305 Identities=17% Similarity=0.246 Sum_probs=258.1
Q ss_pred cccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
...+.++.+.++|||.|..-.+|+..+ ....+.+|++.|+++.|+.+ +||||+-+|.|+||+..++ .....+..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~ 146 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQ 146 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeec
Confidence 456667888999999999999999874 56678899999999999997 9999999999999999999 66667765
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
.-+.+.-+.|+|.+..|+.|+.||.+-+|.+..+. .+.....|..++.+-. |.|+|+.+.++..||++++|+
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~-------f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGE-------FIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCccccc-------ccCCCceEEEEecCceEEEEe
Confidence 66778889999999999999999999999999853 3334445677777776 999999999999999999999
Q ss_pred CCCC-------------ceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecc--cccccCCCCC---EEEEEEeCCc
Q 002234 789 SSKY-------------PKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTG--HRKLLGKANP---VHALQVHNGL 848 (949)
Q Consensus 789 ~~~~-------------v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~--~~~~~~h~~~---V~~l~~~~~~ 848 (949)
.... ..++.++ +..++.|+.++.+++-+..+|+.+....+ ......+... |-++.++..-
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 6432 3334443 34588899999999999999998866553 1122234444 4445556678
Q ss_pred eEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEE
Q 002234 849 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 849 ~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~ 927 (949)
.+.++++.|| +|.|||+...++.....|...|..+.|-++ ++++++.+|.|+.||.++|+++.++ .||...|.++++
T Consensus 299 pL~A~G~vdG-~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~l 376 (399)
T KOG0296|consen 299 PLAACGSVDG-TIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGILDFAL 376 (399)
T ss_pred chhhcccccc-eEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCchheeEEEE
Confidence 8899999997 999999999999999999999999999984 9999999999999999999999999 599999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+|+.++++|+|.|++.+||++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999863
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=247.80 Aligned_cols=247 Identities=17% Similarity=0.286 Sum_probs=212.3
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
.+++.+|.+.|.++.|++| +++|++.||.+.|||.-|. ..++.+.-...+|..++|+|.|+++++|+.|....||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 4789999999999999997 9999999999999999988 67777777889999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC-CEEEEEECCCcEEEEEC
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~ 817 (949)
+.+.+..- ..++. -.+-.|.+++.|..|.+ ++|++|+.|.+..+||+
T Consensus 126 ls~~d~~g------~~~v~--------------------------r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 126 LSTRDAEG------NVRVS--------------------------RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred cccccccc------cceee--------------------------eeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 98642000 00000 01123455566666654 56999999999999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEE
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 893 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~s 893 (949)
++++.. ..+.||.+.|.++++.| +++.+++++.|. ..++||++.+.++++|. |.+.|+++.|.|+ -+++
T Consensus 174 e~g~~~------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 174 ETGQQT------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred ccceEE------EEecCCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 999998 56779999999999999 999999999995 99999999999999999 7899999999998 6999
Q ss_pred EECCCeEEEEECCCCcEEEEeccc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 894 GCKGGTVEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~~~~~l~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
|++|++.++||++..+.+..+... -..+|++++||..|++|++|..|.++.+||.
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999999999999988888521 1238999999999999999999999999995
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.4e-28 Score=267.91 Aligned_cols=309 Identities=18% Similarity=0.249 Sum_probs=248.1
Q ss_pred hccccccccccEEEEecCCCCeEEEecCC----------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~----------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~ 698 (949)
+....++++|..++.+ ..+.+.||.... ..+.+.+|...|+++.|+.| +|++|+.|-++++|+++..
T Consensus 99 v~~i~fSPng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred cceEEECCCCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence 3455677777777665 456789998762 34567799999999999997 9999999999999999877
Q ss_pred ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------------Ce------eEEEE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN------------------------EE------IHCVQ 748 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~------------------------~~------~~~~~ 748 (949)
+.-....+.+|++.|...-|..+...++|.+.||.+.+|.... .+ .....
T Consensus 178 k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 4345778899999999999999999999999999999998761 11 00000
Q ss_pred ee---cCCCceeeeeecc-----------------------------------ceEEEEeCCCEEEEEEec-CeEEEec-
Q 002234 749 VH---DIKDQIQNLAVSN-----------------------------------SILCFIPQGAGIKVHLRN-GKTKLLN- 788 (949)
Q Consensus 749 ~~---~~~~~v~~l~~~~-----------------------------------~~~~fsp~g~~l~~~~~~-g~i~~~~- 788 (949)
.+ +....+.+..+++ ..+.|+..|.+++.++.. |.+-+|+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 00 1112232222221 134566667777777766 6676765
Q ss_pred -----------CCCCceEEEEeCC--EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 789 -----------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 789 -----------~~~~v~~v~~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
|...+.+++++++ .+++|+.||.|++||..+|.|. .++..|+..|+.+.|+..+..+++.+
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~------vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF------VTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE------EEeccCCCceEEEEEEecCCEEEEee
Confidence 4457899999985 7999999999999999999998 56778999999999999999999999
Q ss_pred CCCCEEEEEECCCCeeEEeecCCCc--EEEEEEcCC--EEEEEECCC-eEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPTLSE--VRAMVVSSE--LVYLGCKGG-TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~~~~--v~~l~~s~d--~l~sgs~dg-~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
.|| +|+.||+..++..+++....+ ..|++..|. .+.+|+.|. .|+||++++|+.+..+ .||.++|.+++|+|+
T Consensus 412 LDG-tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 412 LDG-TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPD 489 (893)
T ss_pred cCC-eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccc
Confidence 998 999999999999999986544 567777654 677777765 6999999999999999 699999999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 002234 931 EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 931 g~~L~sgs~Dg~I~iWdl 948 (949)
|+.|++||.|.+|++||+
T Consensus 490 ~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDI 507 (893)
T ss_pred cCeEEeccccceEEEEEe
Confidence 999999999999999996
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.2e-29 Score=283.13 Aligned_cols=260 Identities=20% Similarity=0.317 Sum_probs=215.7
Q ss_pred ccccccccccEEEEecCCCCeEEEecCC---------------------------------ceeeecCCCCceEEEEEeC
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHRE---------------------------------LVHVDSSENGKVLSIACFR 678 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~---------------------------------~~~~~~~h~~~V~~l~~s~ 678 (949)
..+.++.|++.+|.|-.|..|++|.... ....+.||.++|+...|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 3567788889999999999999997641 2235789999999999999
Q ss_pred C--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCce
Q 002234 679 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI 756 (949)
Q Consensus 679 d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v 756 (949)
+ +|+++|.|++||+|.+.+. .++..++||..+||.+.|+|.|-++||+|.|++.++|......+.. ....|-..|
T Consensus 462 d~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-ifaghlsDV 538 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-IFAGHLSDV 538 (707)
T ss_pred cccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-hhccccccc
Confidence 7 9999999999999999999 8999999999999999999999999999999999999988753211 112344455
Q ss_pred eeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC
Q 002234 757 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 836 (949)
Q Consensus 757 ~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 836 (949)
.++. |.|++. ++++||.|.+|++||+.+|..+ +.+.||.
T Consensus 539 ~cv~-------FHPNs~----------------------------Y~aTGSsD~tVRlWDv~~G~~V------RiF~GH~ 577 (707)
T KOG0263|consen 539 DCVS-------FHPNSN----------------------------YVATGSSDRTVRLWDVSTGNSV------RIFTGHK 577 (707)
T ss_pred ceEE-------ECCccc----------------------------ccccCCCCceEEEEEcCCCcEE------EEecCCC
Confidence 5555 666655 4899999999999999999998 6778899
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc----
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI---- 909 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~---- 909 (949)
++|.+++|+|+|.++++++.|| .|++||+.+++.+..+. |.+.|.++.||.| .+++|+.|++|++||+....
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~-~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~ 656 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDG-LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLN 656 (707)
T ss_pred CceEEEEEcCCCceEeecccCC-cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccc
Confidence 9999999999999999999997 99999999999999888 8889999999988 79999999999999975422
Q ss_pred --------------------EEEEeccccccceeEEEEeCCCCEEEEE
Q 002234 910 --------------------RIETLQTGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 910 --------------------~~~~l~~~h~~~I~~l~~spdg~~L~sg 937 (949)
.+.++. ....+|.++.|...+-.|++|
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~llgs~~-tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 657 LGHISTSNSAITQENNASSLLLGSFY-TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccccccccCCCCcceeeeee-ecCceEEEEEEeccceeEEec
Confidence 233332 233478888887655444444
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=284.17 Aligned_cols=270 Identities=27% Similarity=0.443 Sum_probs=230.6
Q ss_pred cccccccccEEEEecCCCCeEEEecC--C--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEec-CCCceeeeEE
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR--E--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSILHLIQQ 705 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~--~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~-~t~~~~~i~~ 705 (949)
...++.+|.++++++.|+.+++|+.. + ....+.+|...|.+++|+|+ ++++++.|++|+|||+ ..+ ..+++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~~~ 241 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNLKT 241 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEEEE
Confidence 46788899999999999999999985 2 34556899999999999997 9999999999999999 455 78999
Q ss_pred ecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 706 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 706 l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
+.+|...|++++|+|+|+++++|+.|++|++||+++++ .......|.+.|.++. |+++|+.
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~-------f~~d~~~----------- 302 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLA-------FSPDGNL----------- 302 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEE-------ECCCCCE-----------
Confidence 99999999999999999999999999999999999975 3333445677888887 8888875
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce--eeeecccccccCCCC--CEEEEEEeCCceEEEEEECCCCEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF--ATIQTGHRKLLGKAN--PVHALQVHNGLVYTASTSLDGAAV 861 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~Dg~~I 861 (949)
+++++.|+.|++||+.++.. . ..+.++.. +++++.|+|++.++++++.|+ .+
T Consensus 303 -----------------l~s~s~d~~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~ 358 (456)
T KOG0266|consen 303 -----------------LVSASYDGTIRVWDLETGSKLCL------KLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TL 358 (456)
T ss_pred -----------------EEEcCCCccEEEEECCCCceeee------ecccCCCCCCceeEEEECCCCcEEEEecCCC-eE
Confidence 78889999999999999983 3 23334433 599999999999999999885 99
Q ss_pred EEEECCCCeeEEeec-CCCcE---EEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccc-ccceeEEEEeCCCCEE
Q 002234 862 KMWSTSNYNMVGSLP-TLSEV---RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEFL 934 (949)
Q Consensus 862 ~iwd~~~~~~~~~~~-~~~~v---~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h-~~~I~~l~~spdg~~L 934 (949)
++||+..+.....+. |...+ .+...+++ ++++|+.|+.|++||..++..+..+ .+| ...+..+.|+|..+++
T Consensus 359 ~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~ 437 (456)
T KOG0266|consen 359 KLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLI 437 (456)
T ss_pred EEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCee
Confidence 999999999988887 43333 23333444 8999999999999999999999988 488 8899999999999999
Q ss_pred EEEe--CCCcEEEEeC
Q 002234 935 VIGT--SDGRIQAWGL 948 (949)
Q Consensus 935 ~sgs--~Dg~I~iWdl 948 (949)
++++ .|+.|++|..
T Consensus 438 ~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKY 453 (456)
T ss_pred eecCcCCCceEEEecC
Confidence 9998 7999999975
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4e-28 Score=300.58 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=217.4
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecCCce---------eeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecC
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV---------HVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~---------~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~ 696 (949)
..+....+.+++.++++|+.|++|+||+..... .....+...|.+++|++ .+|++++.||+|++||+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 344556677889999999999999999975210 11123457899999987 399999999999999999
Q ss_pred CCceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCCE
Q 002234 697 GSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAG 774 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~~ 774 (949)
++ +.+..+.+|.+.|++++|+| ++.+|+||+.||+|++||++++. ..........+.++. |.+ +|.
T Consensus 564 ~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~~~~v~~v~-------~~~~~g~- 631 (793)
T PLN00181 564 RS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKTKANICCVQ-------FPSESGR- 631 (793)
T ss_pred CC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEecCCCeEEEE-------EeCCCCC-
Confidence 98 78889999999999999997 78999999999999999999874 222222233444444 432 233
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
.+++|+.||.|++||++++.... ..+.+|...|.++.|. ++.+++++
T Consensus 632 ---------------------------~latgs~dg~I~iwD~~~~~~~~-----~~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 632 ---------------------------SLAFGSADHKVYYYDLRNPKLPL-----CTMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred ---------------------------EEEEEeCCCeEEEEECCCCCccc-----eEecCCCCCEEEEEEe-CCCEEEEE
Confidence 48999999999999998765321 3456899999999997 56678899
Q ss_pred ECCCCEEEEEECCC------CeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec----------
Q 002234 855 SLDGAAVKMWSTSN------YNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ---------- 915 (949)
Q Consensus 855 s~Dg~~I~iwd~~~------~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~---------- 915 (949)
+.|+ +|++||++. +.++..+. |...+.+++|+++ ++++|+.||.|++|+...+.++..+.
T Consensus 679 s~D~-~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 679 STDN-TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred ECCC-EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9887 999999974 35667776 6677889999987 89999999999999987765443321
Q ss_pred --cccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 916 --TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 916 --~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
..|...|.+++|+|++..|++|+.||+|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234557999999999999999999999999997
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.4e-29 Score=239.10 Aligned_cols=271 Identities=18% Similarity=0.328 Sum_probs=224.2
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
.+..++..-+.-||+|.+++|.|.+|++|++. .+++++.+|...|..++.+.| .+++|+.|..|.+||+++| +.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--kv 93 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--KV 93 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC--ee
Confidence 34455566677799999999999999999997 578999999999999998876 9999999999999999999 89
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
++.+.+|.+.|+.+.|+.+...++|||.|.++++||.++...+.++...
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild------------------------------- 142 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD------------------------------- 142 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-------------------------------
Confidence 9999999999999999999999999999999999999987533333321
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
+....|.++......+++|+.||+++.||++.|+... ... ..||+++.|++++.....++.|+ +++
T Consensus 143 -----ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~s------Dy~--g~pit~vs~s~d~nc~La~~l~s-tlr 208 (307)
T KOG0316|consen 143 -----EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS------DYF--GHPITSVSFSKDGNCSLASSLDS-TLR 208 (307)
T ss_pred -----hhcCceeEEEecccEEEeeccCCcEEEEEeecceeeh------hhc--CCcceeEEecCCCCEEEEeeccc-eee
Confidence 1123455666666679999999999999999998763 222 35899999999999999999996 999
Q ss_pred EEECCCCeeEEeecCC-Cc--EEEEEEcC-C-EEEEEECCCeEEEEECCCCcEEEEeccccccc-eeEEEEeCCCCEEEE
Q 002234 863 MWSTSNYNMVGSLPTL-SE--VRAMVVSS-E-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK-VQCMALDDNEEFLVI 936 (949)
Q Consensus 863 iwd~~~~~~~~~~~~~-~~--v~~l~~s~-d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~-I~~l~~spdg~~L~s 936 (949)
+.|-.+|+.++.++++ .. -...+++. + .+++|++||.|++||+.....+..+. .|... |.++.++|.-..+++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred ecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cCCceeEEeeecccCccceeE
Confidence 9999999999998843 22 22333433 3 89999999999999999999999995 55555 899999998887877
Q ss_pred EeCCCcEEEE
Q 002234 937 GTSDGRIQAW 946 (949)
Q Consensus 937 gs~Dg~I~iW 946 (949)
++.. .+..|
T Consensus 288 A~~~-~~~~~ 296 (307)
T KOG0316|consen 288 ATGH-GDLFW 296 (307)
T ss_pred ecCC-ceece
Confidence 7644 45555
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3.8e-28 Score=255.11 Aligned_cols=268 Identities=19% Similarity=0.294 Sum_probs=234.0
Q ss_pred cccccccccEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEeccc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 709 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H 709 (949)
......+|+.|++|+.||.+++|+.. ..+.++..|.++|.++.|+.+ +|++++.||++.+||..++ ...+.+.-|
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFH 317 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeec
Confidence 34456689999999999999999998 577888999999999999985 9999999999999999999 777888889
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
..+-..|.|-. ...+++.+.||.|+|+.+....+. .....|.++|..+. |.|.|..
T Consensus 318 s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~-~t~~GH~g~V~alk-------~n~tg~L--------------- 373 (524)
T KOG0273|consen 318 SAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPV-KTFIGHHGEVNALK-------WNPTGSL--------------- 373 (524)
T ss_pred cCCccceEEec-CceEeecCCCceEEEEEecCCCcc-eeeecccCceEEEE-------ECCCCce---------------
Confidence 88877888864 457999999999999999876422 22233777888877 7777764
Q ss_pred CCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC---------ceEEEEEECCCCE
Q 002234 790 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---------LVYTASTSLDGAA 860 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---------~~~l~s~s~Dg~~ 860 (949)
|++++.|+++++|.+..+... ..+.+|...|+.+.|+|. +..+++++.|+ +
T Consensus 374 -------------LaS~SdD~TlkiWs~~~~~~~------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-t 433 (524)
T KOG0273|consen 374 -------------LASCSDDGTLKIWSMGQSNSV------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-T 433 (524)
T ss_pred -------------EEEecCCCeeEeeecCCCcch------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-e
Confidence 889999999999998888776 678899999999999975 45688888886 9
Q ss_pred EEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE
Q 002234 861 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg 937 (949)
|++||+..+.++.+|. |..+|++++|+|+ ++++|+.||.|.+|+.++++.++.+. -.+.|..++|+.+|++|..+
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 9999999999999995 9999999999998 99999999999999999999999995 34579999999999999999
Q ss_pred eCCCcEEEEeC
Q 002234 938 TSDGRIQAWGL 948 (949)
Q Consensus 938 s~Dg~I~iWdl 948 (949)
-.||.+++-|+
T Consensus 512 ~sd~~vcvldl 522 (524)
T KOG0273|consen 512 ASDGSVCVLDL 522 (524)
T ss_pred ecCCCceEEEe
Confidence 99999999886
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-27 Score=262.99 Aligned_cols=298 Identities=19% Similarity=0.317 Sum_probs=252.8
Q ss_pred cccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEe--CCEEEEEeCC-CcEEEEecCCCceeeeEEeccc
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACF--RDKIFSGHSD-GTIKVWTGRGSILHLIQQIREH 709 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s--~d~lasgs~D-g~I~vWd~~t~~~~~i~~l~~H 709 (949)
.+......|++|-.+|...+|.+. +.++.+.-...+|..++|+ .|.||.|+.. |.+-||+..+. ..+...++|
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH 349 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGH 349 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeecccc
Confidence 344455688999999999999998 5677777778899999999 5788888754 89999999998 788889999
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
...+++++++|||++++||+.||.|+|||...|- ......+|...|..+. |+..|+.+.+.+.||+++.||.
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~-------f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQ-------FTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEE-------EEecCCEEEEeecCCeEEeeee
Confidence 9999999999999999999999999999999982 3444457888999888 9999999999999999999995
Q ss_pred CC-------------CceEEEEeC-CE-EEEEECCC-cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 790 SK-------------YPKCLALVQ-GK-VYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 790 ~~-------------~v~~v~~~~-~~-l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
.. .-.|++.++ |. +.+|+.|. .|.+|++.+|+.+ ..+.||.+||.+++|+|++..+++
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll------DiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL------DILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee------ehhcCCCCcceeeEEccccCeEEe
Confidence 43 245667664 44 45555554 5999999999998 678899999999999999999999
Q ss_pred EECCCCEEEEEECCC-CeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecc--------------
Q 002234 854 TSLDGAAVKMWSTSN-YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------------- 916 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~-~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~-------------- 916 (949)
+|.|. +|++||+-. ...+.++.....+..++|+|| -+++++-||.|.+||.+.+..+.++..
T Consensus 496 ~SWDk-TVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 496 GSWDK-TVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred ccccc-eEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 99995 999999864 456777888899999999998 799999999999999988776655421
Q ss_pred -----ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 917 -----GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 917 -----~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.....++.+++|+||..+++||..+.|++||+.
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 112378999999999999999999999999973
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.3e-27 Score=257.81 Aligned_cols=277 Identities=27% Similarity=0.444 Sum_probs=232.5
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~ 700 (949)
+.|...+....+.+++.++++++.||.|++|+..+ .......|...+..+.|+++ ++++++.||.|++||+.++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 34445555666777889999999999999999873 45677789999999999996 8999999999999999987
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
+.+..+..|...|.++.|+++++++++++.||.|++||+.+++.. .....+...+.++. |+|++.
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~-------~~~~~~------- 148 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVA-------FSPDGT------- 148 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEE-------EcCcCC-------
Confidence 678888899999999999999999999998999999999976421 22223455566665 555544
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
.+++++.||.|++||+++++.. ..+..|...+.++.|++++..+++++.|+ .
T Consensus 149 ---------------------~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~ 200 (289)
T cd00200 149 ---------------------FVASSSQDGTIKLWDLRTGKCV------ATLTGHTGEVNSVAFSPDGEKLLSSSSDG-T 200 (289)
T ss_pred ---------------------EEEEEcCCCcEEEEEccccccc------eeEecCccccceEEECCCcCEEEEecCCC-c
Confidence 2556666999999999988776 34456778999999999998888888776 9
Q ss_pred EEEEECCCCeeEEee-cCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE
Q 002234 861 VKMWSTSNYNMVGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 861 I~iwd~~~~~~~~~~-~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg 937 (949)
|++||+++++.+..+ .+...+.++.|+|+ ++++++.+|.|++||..+++....+. +|...|.+++|+|++++|+++
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEe
Confidence 999999999999888 47779999999996 66677779999999999999988885 888899999999999999999
Q ss_pred eCCCcEEEEe
Q 002234 938 TSDGRIQAWG 947 (949)
Q Consensus 938 s~Dg~I~iWd 947 (949)
+.||.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-28 Score=251.50 Aligned_cols=289 Identities=18% Similarity=0.278 Sum_probs=226.9
Q ss_pred ccccccEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeC-C----EEEEEeCCCcEEEEecCCCce--eeeEEec
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFR-D----KIFSGHSDGTIKVWTGRGSIL--HLIQQIR 707 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~-d----~lasgs~Dg~I~vWd~~t~~~--~~i~~l~ 707 (949)
+.-.+..|++|++||++++||.. .......||.++|.+++|.. | .+++++.|.++++|..+.++. ..+..-.
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred hcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 33348899999999999999998 67888999999999888863 3 699999999999998887632 2334445
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
||...|-+|...++|..++|||.|.++++|+..+...........+..-... +-+. .+.....+.+-
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~--------~~~~-----~~~r~P~vtl~ 257 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK--------REKE-----GGTRTPLVTLE 257 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh--------hhhc-----ccccCceEEec
Confidence 9999999999999999999999999999999443321111111000000000 0000 11112334455
Q ss_pred cCCCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 788 NSSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 788 ~~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
.|...|.++.|++ +.+++++.|++|+.||+.++........ ...++++..+|...++++++.| +.|++||.
T Consensus 258 GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-------~ksl~~i~~~~~~~Ll~~gssd-r~irl~DP 329 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-------NKSLNCISYSPLSKLLASGSSD-RHIRLWDP 329 (423)
T ss_pred ccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-------CcceeEeecccccceeeecCCC-CceeecCC
Confidence 6788899999986 5699999999999999999998754332 3689999999999999999998 59999999
Q ss_pred CCCe---eEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCc-EEEEeccccccceeEEEEeCCCCEEEEEe
Q 002234 867 SNYN---MVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 867 ~~~~---~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
+++. ...++. |...|.++.|+|. .+++|+.||++++||+++.+ ++..+ .+|.+.|.++.|+ ++..+++||
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGG 407 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGG 407 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEecc
Confidence 8754 233444 7889999999997 79999999999999999988 99999 5999999999996 577999999
Q ss_pred CCCcEEEEe
Q 002234 939 SDGRIQAWG 947 (949)
Q Consensus 939 ~Dg~I~iWd 947 (949)
.|++|+|+.
T Consensus 408 aD~~l~i~~ 416 (423)
T KOG0313|consen 408 ADNKLRIFK 416 (423)
T ss_pred CcceEEEec
Confidence 999999985
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=8.9e-29 Score=251.05 Aligned_cols=246 Identities=22% Similarity=0.363 Sum_probs=212.0
Q ss_pred EecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC
Q 002234 655 WNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 731 (949)
Q Consensus 655 Wd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D 731 (949)
|... ....+..+|.+.|.|+++.|. .+++|+.|++|+|||+.++ ++..++.||-..|..+++|+-..|+++++.|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCC
Confidence 4443 456788999999999999994 9999999999999999999 8889999999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCc
Q 002234 732 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 811 (949)
Q Consensus 732 g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~ 811 (949)
+.|+.||++.++ .....+.|-..|.++. ..|.- +.+++|+.|.+
T Consensus 215 k~VKCwDLe~nk-vIR~YhGHlS~V~~L~-------lhPTl----------------------------dvl~t~grDst 258 (460)
T KOG0285|consen 215 KQVKCWDLEYNK-VIRHYHGHLSGVYCLD-------LHPTL----------------------------DVLVTGGRDST 258 (460)
T ss_pred CeeEEEechhhh-hHHHhccccceeEEEe-------ccccc----------------------------eeEEecCCcce
Confidence 999999999874 2223344455555555 22221 35999999999
Q ss_pred EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-
Q 002234 812 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE- 889 (949)
Q Consensus 812 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d- 889 (949)
+++||+++...+ ..+.||..+|.++.+.|-...++++|.|+ +|++||++.|+...++. |...+.+++.+|+
T Consensus 259 ~RvWDiRtr~~V------~~l~GH~~~V~~V~~~~~dpqvit~S~D~-tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 259 IRVWDIRTRASV------HVLSGHTNPVASVMCQPTDPQVITGSHDS-TVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred EEEeeecccceE------EEecCCCCcceeEEeecCCCceEEecCCc-eEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 999999999888 67789999999999999888899999996 99999999999888887 6788999999998
Q ss_pred -EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 -LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 -~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+++++.| .|+-|++..|..++.+ .+|..-|++++...|| ++++|+++|.+.+||.
T Consensus 332 ~~fASas~d-nik~w~~p~g~f~~nl-sgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 332 NLFASASPD-NIKQWKLPEGEFLQNL-SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred hhhhccCCc-cceeccCCccchhhcc-ccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 56666665 5999999999999997 6999999999998776 8899999999999985
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=231.18 Aligned_cols=255 Identities=19% Similarity=0.312 Sum_probs=215.1
Q ss_pred cccccccccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
-..+.+++..|++++.. .||+||+. ..+..+.+|++.|+++.|.-+ .++|||+||+++|||++.. .+.+.+
T Consensus 45 rLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~ 121 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNY 121 (311)
T ss_pred eEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc--ccchhc
Confidence 34566788888887765 59999987 377889999999999999976 9999999999999999986 555555
Q ss_pred cccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 707 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 707 ~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
.|..+|+++..+|+...|++|..+|.|++||+......+....+...++.++. ..|||++
T Consensus 122 -~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~-------v~~dgsm------------ 181 (311)
T KOG0315|consen 122 -QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT-------VMPDGSM------------ 181 (311)
T ss_pred -cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE-------EcCCCcE------------
Confidence 58899999999999999999999999999999987544455555566777776 7777775
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
++.+...|...+|++-++.....+.+..++..|.+.+....++||+++++++|.|. +++||++
T Consensus 182 ----------------l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~ 244 (311)
T KOG0315|consen 182 ----------------LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK-TVKIWNT 244 (311)
T ss_pred ----------------EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-eEEEEec
Confidence 66777788999999988777766777778999999999999999999999999994 9999999
Q ss_pred CCC-eeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 867 SNY-NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 867 ~~~-~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
.+. +....+. |...++..+||.| ||++|+.|+.+++||+..++.+.... +|.....|++..
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~-gh~K~~vc~~ln 309 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ-GHHKAAVCVALN 309 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC-CcccccEEEEee
Confidence 988 4445555 6789999999998 99999999999999999999999995 666666666653
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=258.92 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=236.6
Q ss_pred eEEEecCCceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEE
Q 002234 652 ADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 728 (949)
Q Consensus 652 I~vWd~~~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sg 728 (949)
.+.+-+...+..+.+|+..|+++.|.|. +|+|++.|+.|+||++.... .+++++.+|..+|..+.|+++|..++|+
T Consensus 198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeee
Confidence 3445556778899999999999999993 99999999999999998722 8999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCC-CEEEEEEecCeEEEecCC------------CCceE
Q 002234 729 SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNSS------------KYPKC 795 (949)
Q Consensus 729 s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g-~~l~~~~~~g~i~~~~~~------------~~v~~ 795 (949)
|.|+++++||+++| .+...+.....+.++. |.|++ +.+++|..++.++.||.. +.|..
T Consensus 277 sfD~~lKlwDtETG--~~~~~f~~~~~~~cvk-------f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 277 SFDRFLKLWDTETG--QVLSRFHLDKVPTCVK-------FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred ecceeeeeeccccc--eEEEEEecCCCceeee-------cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 99999999999999 5666666677888888 99998 788899999999999954 45788
Q ss_pred EEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe---
Q 002234 796 LALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--- 870 (949)
Q Consensus 796 v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--- 870 (949)
+.|-+ .++++.+.|+++++|+.+.+-.+... ...+.-...++..+|++.+++.-+.|+ .|.++.+...-
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPFRLN 421 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccchhh-----cchhhccCcceecCCCCCeehhhccCc-eEEEEecccccccC
Confidence 88875 46999999999999999988766321 122334577899999999999999996 99999875422
Q ss_pred eEEeec-C--CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCC-CEEEEEeCCCcEE
Q 002234 871 MVGSLP-T--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQ 944 (949)
Q Consensus 871 ~~~~~~-~--~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~ 944 (949)
..+.+. | .+.-..+.|||| ++++|+.||.+.+||.++-+.+..++ .|.+.+..+.|+|.. ..+||++.||.|+
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeE
Confidence 223333 2 355678999999 89999999999999999999999995 889999999999965 6899999999999
Q ss_pred EEe
Q 002234 945 AWG 947 (949)
Q Consensus 945 iWd 947 (949)
+||
T Consensus 501 iwd 503 (503)
T KOG0282|consen 501 IWD 503 (503)
T ss_pred ecC
Confidence 997
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=262.49 Aligned_cols=290 Identities=21% Similarity=0.303 Sum_probs=249.4
Q ss_pred ccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEE
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 714 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 714 (949)
...++....|..+-++|.++ ....+.|.++.|..++|-+ ++++.++..+.+|+++..+. .+. .+.||+..|.
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~-ii~GH~e~vl 369 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQ-IIPGHTEAVL 369 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceE-EEeCchhhee
Confidence 44555667788899998774 5666778999999999987 49999999999999999987 333 7889999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEEEeecCCCceeeeeeccceEEEEeCC-CEEEEEEecCeEEEec--
Q 002234 715 GLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLN-- 788 (949)
Q Consensus 715 ~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~fsp~g-~~l~~~~~~g~i~~~~-- 788 (949)
+++...+|.+|+|||.|+++++|.++.+. ........|...|.++. ++..+ ..+++++.|.++++|+
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava-------~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA-------GSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee-------ecccCccEEEEecCCceEEEecCC
Confidence 99977788999999999999999985543 11222345677777776 55544 4677888999999997
Q ss_pred -------------------CCCCceEEEEeCC--EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC
Q 002234 789 -------------------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 847 (949)
Q Consensus 789 -------------------~~~~v~~v~~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 847 (949)
|.+.|+|++++++ .+++||.|.+.++|++...... ..+.||...|.++.|++.
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~------~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL------GVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE------EEeeCCccceEEEEeccc
Confidence 3456899999874 4899999999999999977766 677889999999999999
Q ss_pred ceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeE
Q 002234 848 LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 924 (949)
Q Consensus 848 ~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~ 924 (949)
...++++|.|. +|+||.+.++.++++|. |...|....|-.+ .+++++.||-|++|+++++.++.++ ..|.+.|++
T Consensus 517 dq~laT~SgD~-TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H~DrvWa 594 (775)
T KOG0319|consen 517 DQLLATCSGDK-TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAHNDRVWA 594 (775)
T ss_pred cceeEeccCCc-eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhccceeEE
Confidence 99999999996 99999999999999999 7889999998655 8999999999999999999999999 599999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEe
Q 002234 925 MALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 925 l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++.+|++.+++||+.||.|.+|.
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999995
No 38
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.5e-26 Score=237.95 Aligned_cols=265 Identities=23% Similarity=0.346 Sum_probs=224.5
Q ss_pred ccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEE
Q 002234 640 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 715 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~ 715 (949)
...+++||.|..+.++|.. +.+.++.||+..|+.+.|+|+ .+++++.|..|+||..... ........|.++|+.
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ 308 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTG 308 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCcccccccccccee
Confidence 3678899999999999987 578899999999999999996 8999999999999999887 566777889999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCce
Q 002234 716 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 794 (949)
Q Consensus 716 v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~ 794 (949)
+..+|+|+||+++|.||+..+.|++++...+....+ ..-.+.+.. |.|||-.
T Consensus 309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~-------fHpDgLi-------------------- 361 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA-------FHPDGLI-------------------- 361 (506)
T ss_pred eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee-------EcCCceE--------------------
Confidence 999999999999999999999999999643333332 122344444 8888754
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEe
Q 002234 795 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 874 (949)
Q Consensus 795 ~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~ 874 (949)
+.+|..||.+++||+.++... ..|.+|.++|..++|+.+|.|++++..|+ .|++||++.-+..++
T Consensus 362 --------fgtgt~d~~vkiwdlks~~~~------a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 362 --------FGTGTPDGVVKIWDLKSQTNV------AKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRKLKNFKT 426 (506)
T ss_pred --------EeccCCCceEEEEEcCCcccc------ccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehhhcccce
Confidence 788999999999999999876 68889999999999999999999999987 899999999888888
Q ss_pred ecC--CCcEEEEEEcCC--EEEEEECCCeEEEEECC--CCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 875 LPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK--RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 875 ~~~--~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~--~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.. ...+.++.|.+. +++.++.|=+|++++.. ++..+..+ ..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeeccchhheEEeec
Confidence 773 446889988766 78888777667777643 45677777 478889999999999999999999999999876
Q ss_pred C
Q 002234 949 S 949 (949)
Q Consensus 949 ~ 949 (949)
+
T Consensus 506 ~ 506 (506)
T KOG0289|consen 506 T 506 (506)
T ss_pred C
Confidence 3
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=257.91 Aligned_cols=273 Identities=19% Similarity=0.289 Sum_probs=232.1
Q ss_pred HhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeee
Q 002234 628 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 628 ~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
...++...+.+.-.+++++-.+|.|.|||+++ .+..+.-..-+|.+..|-+ +.+++|++|+.|+||+.+|+ +.+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV 90 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKV 90 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--eee
Confidence 34455666667777999999999999999984 4555666688999999987 59999999999999999999 899
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
.+|..|.+.|.+++.+|.-.+++|+|+|-+|++||.+.+- .+.+. ..|..-|.+++ |.|...
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-a~~qtfeGH~HyVMqv~-------fnPkD~--------- 153 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-ACEQTFEGHEHYVMQVA-------FNPKDP--------- 153 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce-eeeeEEcCcceEEEEEE-------ecCCCc---------
Confidence 9999999999999999999999999999999999999863 33333 34555555555 444432
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC--CceEEEEEECCCCE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAA 860 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~Dg~~ 860 (949)
+.++++|-|++|++|.+.+..+. .++.+|...|+++.+.+ |..|+++++.| .+
T Consensus 154 ------------------ntFaS~sLDrTVKVWslgs~~~n------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD-~t 208 (794)
T KOG0276|consen 154 ------------------NTFASASLDRTVKVWSLGSPHPN------FTLEGHEKGVNCVDYYTGGDKPYLISGADD-LT 208 (794)
T ss_pred ------------------cceeeeeccccEEEEEcCCCCCc------eeeeccccCcceEEeccCCCcceEEecCCC-ce
Confidence 46999999999999999988877 56778999999999974 56899999877 59
Q ss_pred EEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE
Q 002234 861 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg 937 (949)
|+|||.++..|++++. |...|..+.|+|. .+++|+.||+++||+..|-+...++. -..+.|++++-.+.+..++.|
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG 287 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVG 287 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEe
Confidence 9999999999999999 7889999999999 89999999999999999998888885 445689999999988899999
Q ss_pred eCCCcEEE
Q 002234 938 TSDGRIQA 945 (949)
Q Consensus 938 s~Dg~I~i 945 (949)
.+.|.|.+
T Consensus 288 ~Deg~i~v 295 (794)
T KOG0276|consen 288 FDEGSVTV 295 (794)
T ss_pred ccCCcEEE
Confidence 98888754
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-27 Score=234.69 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=222.7
Q ss_pred eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 663 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
.+.||..+++.+.|+.+ +|+|++.|.++.||-..+| +.+.++.||++.|||++.+.+.+.++||+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 56799999999999974 9999999999999999888 7999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec-----CeEEEec-------------------CCCCceEE
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-----GKTKLLN-------------------SSKYPKCL 796 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~-----g~i~~~~-------------------~~~~v~~v 796 (949)
+| +++.....+.+|..+. |+++|..++....+ +.+.+++ +...+..+
T Consensus 83 tG--k~la~~k~~~~Vk~~~-------F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 83 TG--KQLATWKTNSPVKRVD-------FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred CC--cEEEEeecCCeeEEEe-------eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 99 5666677788899888 88888887766544 3344444 23345555
Q ss_pred EEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEe
Q 002234 797 ALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 874 (949)
Q Consensus 797 ~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~ 874 (949)
-+.+ ..|++|..||.|..||+++|.... .....|...|+.+.++++..+++++|.|. +-++||..+-+.+++
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v-----~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-takl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELV-----DSDEEHSSKINDLQFSRDRTYFITGSKDT-TAKLVDVRTLEVLKT 227 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceee-----echhhhccccccccccCCcceEEecccCc-cceeeeccceeeEEE
Confidence 5554 569999999999999999987654 34456888999999999999999999995 999999999999999
Q ss_pred ecCCCcEEEEEEcCC--EEEEEECCCe--E------------EEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEe
Q 002234 875 LPTLSEVRAMVVSSE--LVYLGCKGGT--V------------EIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 875 ~~~~~~v~~l~~s~d--~l~sgs~dg~--I------------~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
+....++++.+++|. .++.|+.... | ++|++-..+.+..+ .+|-++|++++|+|||+..++|+
T Consensus 228 y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 228 YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-cccccCcceeEECCCCcccccCC
Confidence 999999999999996 6666653321 2 22222222345566 48999999999999999999999
Q ss_pred CCCcEEEEeC
Q 002234 939 SDGRIQAWGL 948 (949)
Q Consensus 939 ~Dg~I~iWdl 948 (949)
+||.|++.-+
T Consensus 307 EDG~VR~h~F 316 (327)
T KOG0643|consen 307 EDGYVRLHHF 316 (327)
T ss_pred CCceEEEEEe
Confidence 9999998643
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=243.39 Aligned_cols=262 Identities=19% Similarity=0.272 Sum_probs=227.3
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
++..+....+.++-..+++++.|++|++||.. +....+.||++.|..++|+.. ++++++.|=.+++||..+. .++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c 185 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRC 185 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHH
Confidence 33334444455555678889999999999997 567889999999999999974 9999999999999999875 478
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEec
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 781 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~ 781 (949)
++.+.+|...|.+++|-|.|++++|++.|.+|+.|++.+| .++.. ..|...|..+. .+.||..+++++.+
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~-------v~~DGti~As~s~d 256 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVR-------VNQDGTIIASCSND 256 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEE-------ecCCeeEEEecCCC
Confidence 9999999999999999999999999999999999999998 44444 45677888877 88899999999999
Q ss_pred CeEEEec------------CCCCceEEEEeC-----------------CEEEEEECCCcEEEEECCCCceeeeecccccc
Q 002234 782 GKTKLLN------------SSKYPKCLALVQ-----------------GKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 832 (949)
Q Consensus 782 g~i~~~~------------~~~~v~~v~~~~-----------------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 832 (949)
.++++|- |.-.|.|+++.+ ..+.+++.|++|++||+.++.++ ..+
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~tL 330 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FTL 330 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EEE
Confidence 9999996 344577777742 15889999999999999999998 577
Q ss_pred cCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEEC
Q 002234 833 LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 833 ~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~ 905 (949)
.+|.+.|..++|+|.|+|++++..|+ ++++||++++++.++++ |..-++++.|..+ ++++|+-|.++++|..
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCC-cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 88999999999999999999998775 99999999999999998 7888999999877 9999999999999974
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.3e-27 Score=268.44 Aligned_cols=261 Identities=26% Similarity=0.427 Sum_probs=225.0
Q ss_pred ccccccEEEEecCCCCeEEEecCC--ceee-ecCCCCceEEEEEe--CCEEEEEeCCCcEEEEecCCCceeeeEEecccC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE--LVHV-DSSENGKVLSIACF--RDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 710 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~--~~~~-~~~h~~~V~~l~~s--~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 710 (949)
.++.+.++++++.|++|++||..+ .+.. +.||.+.|++++|. .+++++|+.|.+++|||..+| .|...+.+|.
T Consensus 214 ~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~ 291 (537)
T KOG0274|consen 214 LQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHT 291 (537)
T ss_pred heeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCC
Confidence 445678999999999999999874 3334 88999999999999 679999999999999999999 8999999999
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
+.|.++... +.++++||.|.+|++|++.++. ++.... |.++|.++
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v------------------------------ 337 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTGPVNCV------------------------------ 337 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcc--eEEEeccccccEEEE------------------------------
Confidence 999998874 4678899999999999999874 333332 55555554
Q ss_pred CCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC
Q 002234 790 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
....+.+++|+.||+|++||+.+++++ ..+.+|...|+++.+.+. ..+.+++.|+ +|++||+.+.
T Consensus 338 -------~~~~~~lvsgs~d~~v~VW~~~~~~cl------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~-~IkvWdl~~~ 402 (537)
T KOG0274|consen 338 -------QLDEPLLVSGSYDGTVKVWDPRTGKCL------KSLSGHTGRVYSLIVDSE-NRLLSGSLDT-TIKVWDLRTK 402 (537)
T ss_pred -------EecCCEEEEEecCceEEEEEhhhceee------eeecCCcceEEEEEecCc-ceEEeeeecc-ceEeecCCch
Confidence 445567999999999999999999998 677889999999988776 7888999995 9999999999
Q ss_pred -eeEEeec-CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 870 -NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 870 -~~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+++.++. |..-+..+.+..+++++++.||+|++||..++++++++...|.+.|+.+++. ...+++++.||++++||
T Consensus 403 ~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 403 RKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 9999999 5667778888888999999999999999999999999964477889988886 46788999999999999
Q ss_pred CC
Q 002234 948 LS 949 (949)
Q Consensus 948 l~ 949 (949)
+.
T Consensus 481 l~ 482 (537)
T KOG0274|consen 481 LR 482 (537)
T ss_pred cc
Confidence 73
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.4e-27 Score=259.81 Aligned_cols=270 Identities=15% Similarity=0.210 Sum_probs=230.7
Q ss_pred hhcccccccccc--EEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 630 LRKYSPLAFEMV--KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 630 ~~~~~~~~~~~~--~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
..+...++|.++ +++++-.+|.|++||+. +++..+..|.|+|..++|+|. +++||++|-.|+||+..+. +++
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rcl 86 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCL 86 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--eeh
Confidence 334445555554 89999999999999998 788889999999999999996 9999999999999999999 899
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
.++.||-+.|..+.|++.-.+++|+|+|.||+||++.+++.. -....|..-|.|.. |.|....+++++.|.+
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-avltGHnHYVMcAq-------FhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-AVLTGHNHYVMCAQ-------FHPTEDLIVSASLDQT 158 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-EEEecCceEEEeec-------cCCccceEEEecccce
Confidence 999999999999999999999999999999999999998522 22234567787777 9999999999999999
Q ss_pred EEEecC-----------------------------------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCC
Q 002234 784 TKLLNS-----------------------------------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG 820 (949)
Q Consensus 784 i~~~~~-----------------------------------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~ 820 (949)
+++||. ...|.-.+|+| ..+++|++|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 999983 12466777887 56999999999999999876
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEECCC
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGG 898 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg 898 (949)
+.... ....||.++|.++-|||....+++.|.|+ +|++||+...+.++++. .+...+.++.+|. .++.++.|+
T Consensus 239 KaWEv----DtcrgH~nnVssvlfhp~q~lIlSnsEDk-sirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 239 KAWEV----DTCRGHYNNVSSVLFHPHQDLILSNSEDK-SIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred cceee----hhhhcccCCcceEEecCccceeEecCCCc-cEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCC
Confidence 65433 56789999999999999999999999995 99999999999999998 5788999999999 677777787
Q ss_pred eEEEEECCCCcEEEEe
Q 002234 899 TVEIWDQKRQIRIETL 914 (949)
Q Consensus 899 ~I~vwd~~~~~~~~~l 914 (949)
-+.||.++...+...+
T Consensus 314 Gm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 314 GMIVFKLERERPAYAV 329 (1202)
T ss_pred ceEEEEEcccCceEEE
Confidence 7888888755544444
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=239.34 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=229.0
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCC----------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 697 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~----------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t 697 (949)
.....-|++||+|+++|+.||.|.|||+.+ ....+.-|..+|.|+.||.| ++++|+.||.|+||.+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 344677899999999999999999999863 12234558899999999997 999999999999999999
Q ss_pred CceeeeEEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 698 SILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 698 ~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
| .|++.|. .|+..|+|+.|+.|+..++++|.|.++|+--+.+|+ .......|...|+... |.+||..
T Consensus 295 G--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~-------ft~dG~~-- 362 (508)
T KOG0275|consen 295 G--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEAT-------FTDDGHH-- 362 (508)
T ss_pred c--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceE-------EcCCCCe--
Confidence 9 8999997 899999999999999999999999999999999985 2222335566676666 8888875
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTS 855 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s 855 (949)
+++++.||+|++|+.+++.+..++.+ .+...+|+++-.-| +...++.+.
T Consensus 363 --------------------------iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 363 --------------------------IISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred --------------------------EEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEc
Confidence 88999999999999999999866543 34567888888865 344555555
Q ss_pred CCCCEEEEEECCCCeeEEeecC----CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPT----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~----~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
..+ +|.|.++. |+.++++.. ++...+...||. ++++.+.|+.++.|.+.+|+...++ .-|...|-.++-+|
T Consensus 413 rsn-tv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 413 RSN-TVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHP 489 (508)
T ss_pred CCC-eEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecccccccccccCc
Confidence 554 99999884 778888872 456777788887 8999999999999999999999998 47888899999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 002234 930 NEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 930 dg~~L~sgs~Dg~I~iWd 947 (949)
..+.+++-++||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.7e-26 Score=251.06 Aligned_cols=306 Identities=18% Similarity=0.256 Sum_probs=237.1
Q ss_pred ccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCE
Q 002234 638 FEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 713 (949)
Q Consensus 638 ~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V 713 (949)
.+...|+.|..||.|++|+.. ....++.||..+|+++.|... .|+|||.|+.|.|||+-.. .-...+.||.+.|
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--~Gl~rL~GHkd~i 152 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--EGLFRLRGHKDSI 152 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--eeeEEeecchHHH
Confidence 466678999999999999998 677888999999999999984 9999999999999999877 6788899999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee-cCCCceeeeeeccc-eEE------------------------
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNS-ILC------------------------ 767 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~-~~~------------------------ 767 (949)
+..-|..+.++++|.|.|+.|++||+.+. .|+..+ .|.+.++.+.+.+. .+.
T Consensus 153 T~~~F~~~~~~lvS~sKDs~iK~WdL~tq--hCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 153 TQALFLNGDSFLVSVSKDSMIKFWDLETQ--HCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred hHHhccCCCeEEEEeccCceEEEEecccc--eeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccccccccc
Confidence 99999988899999999999999999997 555544 45666666654431 011
Q ss_pred ---------------------EEeCCCEEEEEEecCeEEEec--------------------------------------
Q 002234 768 ---------------------FIPQGAGIKVHLRNGKTKLLN-------------------------------------- 788 (949)
Q Consensus 768 ---------------------fsp~g~~l~~~~~~g~i~~~~-------------------------------------- 788 (949)
..++++.++....|..+.++.
T Consensus 231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~ 310 (888)
T KOG0306|consen 231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE 310 (888)
T ss_pred ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence 111122222222221111111
Q ss_pred -------------------------------------------------------------CCCCceEEEEeCCEEE-EE
Q 002234 789 -------------------------------------------------------------SSKYPKCLALVQGKVY-CG 806 (949)
Q Consensus 789 -------------------------------------------------------------~~~~v~~v~~~~~~l~-sg 806 (949)
|...|+++.++.+.++ ..
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S 390 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS 390 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee
Confidence 1123566666655543 34
Q ss_pred ECCCcEEEEECCCCceeeeeccc----------------------------------ccccCCCCCEEEEEEeCCceEEE
Q 002234 807 CQDGAIQEIDLATGTFATIQTGH----------------------------------RKLLGKANPVHALQVHNGLVYTA 852 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~~~~~----------------------------------~~~~~h~~~V~~l~~~~~~~~l~ 852 (949)
+..+++++|+..+.+++.+.... ..+..|.+.|.+++..||+..++
T Consensus 391 ga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 391 GAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred cCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 45788999999988877554211 13457999999999999999999
Q ss_pred EEECCCCEEEEEECCC-----Ce--eE------EeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccc
Q 002234 853 STSLDGAAVKMWSTSN-----YN--MV------GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG 917 (949)
Q Consensus 853 s~s~Dg~~I~iwd~~~-----~~--~~------~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 917 (949)
++|.|. +|++||..- +. .+ +++.-...|.|+.+||| +++++--|++|+||-+++.+..-++ .|
T Consensus 471 T~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL-YG 548 (888)
T KOG0306|consen 471 TGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL-YG 548 (888)
T ss_pred EecCCc-EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee-cc
Confidence 999995 999999641 11 11 22334678999999999 8999999999999999999988888 59
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 918 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 918 h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|.-+|.||.+|||++.++|||.|.+|+||.++
T Consensus 549 HkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 549 HKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 99999999999999999999999999999874
No 46
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=7.9e-28 Score=249.01 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=232.1
Q ss_pred HHHHHhhHhhhccccccccccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEe
Q 002234 621 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 694 (949)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd 694 (949)
..++.+|..-++..-+-.+...|++||.|..|++|+.. +...++.|..++|+++.|.++ ++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 34445555555555566667899999999999999986 366788889999999999985 899999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
+... +...++.||++.|+++.|......+++|+.|.+|+.||+... .|....-....+..+.
T Consensus 248 vd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~--~C~kt~l~~S~cnDI~-------------- 309 (459)
T KOG0288|consen 248 VDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA--YCSKTVLPGSQCNDIV-------------- 309 (459)
T ss_pred ccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh--heeccccccccccceE--------------
Confidence 9998 889999999999999999987777999999999999999885 4444332223333332
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
..+..+++|-.|++|+.||+++..... ....+ +.|+++..+.++.-+.++
T Consensus 310 -----------------------~~~~~~~SgH~DkkvRfwD~Rs~~~~~------sv~~g-g~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 310 -----------------------CSISDVISGHFDKKVRFWDIRSADKTR------SVPLG-GRVTSLDLSMDGLELLSS 359 (459)
T ss_pred -----------------------ecceeeeecccccceEEEeccCCceee------EeecC-cceeeEeeccCCeEEeee
Confidence 112247888999999999999998874 33334 489999999999999999
Q ss_pred ECCCCEEEEEECCCCeeEEeec-----CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccccc-ceeEEE
Q 002234 855 SLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMA 926 (949)
Q Consensus 855 s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~-~I~~l~ 926 (949)
+.|+ ++.+.|+++......+. .....+.+.|||+ |+++||.||.|+||++.++++...+...+.. .|++++
T Consensus 360 sRDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 360 SRDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred cCCC-ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 9998 99999999999888876 2456889999999 9999999999999999999999998766665 799999
Q ss_pred EeCCCCEEEEEeCCCcEEEEe
Q 002234 927 LDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 927 ~spdg~~L~sgs~Dg~I~iWd 947 (949)
|+|.|..|++++.++.+.+|.
T Consensus 439 W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EcCCCchhhcccCCcceEecC
Confidence 999999999999999999993
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=254.37 Aligned_cols=278 Identities=22% Similarity=0.352 Sum_probs=232.8
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
.+|+.-++...++.+...+++|+ .+.|++|+.++......-..+.+.+..|-|. ++++|...|.+.+||+.+. ..
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l 446 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA--SL 446 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh--hh
Confidence 45666666667777776666654 5679999998544443344558999999995 9999999999999999998 78
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-----Ce------eEEEEeecCCCceeeeeeccceEEEEeC
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-----EE------IHCVQVHDIKDQIQNLAVSNSILCFIPQ 771 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~-----~~------~~~~~~~~~~~~v~~l~~~~~~~~fsp~ 771 (949)
+.+.+.|.+.||+++.+||+..+++||.|.+|++||..- |. +......+..+.|.++. +|||
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~-------~Spd 519 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS-------VSPD 519 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE-------EcCC
Confidence 888899999999999999999999999999999999742 11 11112223445555555 6666
Q ss_pred CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEE
Q 002234 772 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 851 (949)
Q Consensus 772 g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 851 (949)
|++ ++++--|.+|++|-+.+-+.. ..+.||.-||.++..+||+..+
T Consensus 520 gk~----------------------------LaVsLLdnTVkVyflDtlKFf------lsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 520 GKL----------------------------LAVSLLDNTVKVYFLDTLKFF------LSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred CcE----------------------------EEEEeccCeEEEEEecceeee------eeecccccceeEEeccCCcCeE
Confidence 665 667777888999988887766 5788999999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 852 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 852 ~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
+++|.| +.|++|-+.-|.|-+++- |+..|.++.|-|+ .+++++.|+.|+-||-...+.++++ .+|...|++++.+
T Consensus 566 vTgSAD-KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 566 VTGSAD-KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVS 643 (888)
T ss_pred EeccCC-CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccchheeeeeEEc
Confidence 999999 599999999999998887 8899999999998 7999999999999999999999999 4899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 002234 929 DNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 929 pdg~~L~sgs~Dg~I~iWdl 948 (949)
|+|.+++++|.|.+|++|.-
T Consensus 644 ~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred CCCCeEEeccCCceeEeeec
Confidence 99999999999999999974
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.7e-26 Score=261.85 Aligned_cols=252 Identities=24% Similarity=0.421 Sum_probs=212.7
Q ss_pred eEEEecCCceeeecC-CCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEE
Q 002234 652 ADFWNHRELVHVDSS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 728 (949)
Q Consensus 652 I~vWd~~~~~~~~~~-h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sg 728 (949)
.++|.. ...+.+ |...|.++.|+++ .+++++.|+.+++|+..+.+....+.+.+|...|.+++|+|+|++++++
T Consensus 145 ~~~~~~---~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 145 SRVFSL---EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred ccccee---eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe
Confidence 344554 334444 4889999999997 9999999999999999777212677778999999999999999999999
Q ss_pred eCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC
Q 002234 729 SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 808 (949)
Q Consensus 729 s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~ 808 (949)
+.|++|++||+..+.........|...|+++. |+|+|+. +++|+.
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~-------f~p~g~~----------------------------i~Sgs~ 266 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA-------FSPDGNL----------------------------LVSGSD 266 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEE-------ecCCCCE----------------------------EEEecC
Confidence 99999999999544323344447888888887 8898854 899999
Q ss_pred CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEeec-CC-C-cEEE
Q 002234 809 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP-TL-S-EVRA 883 (949)
Q Consensus 809 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~~-~~-~-~v~~ 883 (949)
|++|++||++++++. +.+.+|..+|++++|++++.++++++.|+ .|++||+.++. +...+. +. . .+++
T Consensus 267 D~tvriWd~~~~~~~------~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECV------RKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSAPVTS 339 (456)
T ss_pred CCcEEEEeccCCeEE------EeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCCceeE
Confidence 999999999999988 77889999999999999999999999986 99999999999 556665 22 2 6899
Q ss_pred EEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccccc---ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 884 MVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG---KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 884 l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~---~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.|+|+ ++++++.|+.+++||+..+..+..+. +|.. .+.+..+++++.++++|+.|+.|++||+.
T Consensus 340 ~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999998 89999999999999999999999995 6655 34455567899999999999999999974
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=7.8e-26 Score=225.68 Aligned_cols=245 Identities=18% Similarity=0.286 Sum_probs=201.2
Q ss_pred CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
.....+.+|++.|+.+.|+|+ .|+||+.|..|.+|++.... +-...+++|+++|..+.|.+|++.++|+|.|++|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 355678899999999999997 99999999999999977553 567788899999999999999999999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 816 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd 816 (949)
||.++|+ .......|..-|+.+. -+.-|. ..+.+|+.||++++||
T Consensus 117 wD~~tG~-~~rk~k~h~~~vNs~~-------p~rrg~---------------------------~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 117 WDAETGK-RIRKHKGHTSFVNSLD-------PSRRGP---------------------------QLVCSGSDDGTLKLWD 161 (338)
T ss_pred Eecccce-eeehhccccceeeecC-------ccccCC---------------------------eEEEecCCCceEEEEe
Confidence 9999995 2223333444444443 111111 2377899999999999
Q ss_pred CCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEE
Q 002234 817 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 893 (949)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~s 893 (949)
+++...++.+. ....++++.|...+.-+.+++.|+ .|++||++.+.....+. |..+|+.+..+++ ++.+
T Consensus 162 ~R~k~~~~t~~-------~kyqltAv~f~d~s~qv~sggIdn-~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 162 IRKKEAIKTFE-------NKYQLTAVGFKDTSDQVISGGIDN-DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred ecccchhhccc-------cceeEEEEEecccccceeeccccC-ceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence 99888774433 236899999999999999999997 99999999999999998 7899999999998 8999
Q ss_pred EECCCeEEEEECCCC----cEEEEecccccc----ceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 894 GCKGGTVEIWDQKRQ----IRIETLQTGTSG----KVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 894 gs~dg~I~vwd~~~~----~~~~~l~~~h~~----~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
-+.|+++++||++-. .++..+. +|.- .....+|+|++.++-+|+.|..+++||.
T Consensus 234 nsMd~tvrvwd~rp~~p~~R~v~if~-g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPSQRCVKIFQ-GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred ccccceEEEEEecccCCCCceEEEee-cchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 999999999998743 3466664 4432 4567789999999999999999999996
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.4e-25 Score=216.24 Aligned_cols=242 Identities=18% Similarity=0.249 Sum_probs=205.2
Q ss_pred eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCC-CceeeeEEe-cccCCCEEEEEEecCCCEEEEEeCCCcEE
Q 002234 661 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-SILHLIQQI-REHTKAVTGLAILQSGEMLYSGSLDKTAR 735 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t-~~~~~i~~l-~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~ 735 (949)
.+.+.+|++.+..++|+|. .|||++.|..|++|+... ..+.+...+ .+|+..|.+++|+|.|++|++||.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5677899999999999997 799999999999999984 334555555 47999999999999999999999999999
Q ss_pred EEECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 736 VWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 736 vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
||.-..++..++... .|...|.+++ |+++|.+ |++++.|.+|-+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Va-------ws~sG~~----------------------------LATCSRDKSVWi 131 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVA-------WSASGNY----------------------------LATCSRDKSVWI 131 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEE-------EcCCCCE----------------------------EEEeeCCCeEEE
Confidence 999988887776665 4677788877 8888775 889999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC---CCeeEEeec-CCCcEEEEEEcCC-
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS---NYNMVGSLP-TLSEVRAMVVSSE- 889 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~---~~~~~~~~~-~~~~v~~l~~s~d- 889 (949)
|.+..+..... ...+.+|...|..+.|||...+++++|.|+ +|++|+-. ...++.++. |...|.+++|++.
T Consensus 132 We~deddEfec---~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 132 WEIDEDDEFEC---IAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred EEecCCCcEEE---EeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 99986654322 256788999999999999999999999997 99999876 456888888 6679999999986
Q ss_pred -EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 -LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 -~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+++++.|++|+||-..+ .+..-|+..+..+.|. ...|++++.|+.|++|.-
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 799999999999999652 3334588899999998 458999999999999853
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=4.7e-27 Score=242.85 Aligned_cols=235 Identities=20% Similarity=0.357 Sum_probs=204.3
Q ss_pred CCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 668 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
..+|..|.|.|+ .|++|+..|.+.+|+..+- ..-..++.|..+|.++.|+++|.+++||+.+|.|++|+.+....+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 467999999997 9999999999999998654 344456789999999999999999999999999999998875322
Q ss_pred EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeee
Q 002234 746 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 746 ~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
.+. ..+...|.+++ |+|+.. ++++++.||+|+|||....+..
T Consensus 174 ~~~-ahh~eaIRdla-------fSpnDs----------------------------kF~t~SdDg~ikiWdf~~~kee-- 215 (464)
T KOG0284|consen 174 IIQ-AHHAEAIRDLA-------FSPNDS----------------------------KFLTCSDDGTIKIWDFRMPKEE-- 215 (464)
T ss_pred Hhh-Hhhhhhhheec-------cCCCCc----------------------------eeEEecCCCeEEEEeccCCchh--
Confidence 221 12336666666 666433 5999999999999999888765
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
+.+.||.-.|.+++|||....++++|.|. .|++||.+++.++.++. |...|..+.|+++ +|+++|.|..+++
T Consensus 216 ----~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 216 ----RVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred ----heeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 66789999999999999999999999996 99999999999999998 7889999999988 9999999999999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl 948 (949)
||+++.+.+.+++ +|...|+++.|+|-. .+|.+|+.||.|..|.+
T Consensus 291 ~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 291 FDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred EehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEec
Confidence 9999999999995 999999999999954 68889999999999986
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.3e-25 Score=214.58 Aligned_cols=278 Identities=14% Similarity=0.215 Sum_probs=230.4
Q ss_pred HHHHhhHhhhccccccccccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEe
Q 002234 622 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWT 694 (949)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd 694 (949)
.-.+.+..-++...+..+|.++++|+.|++++||+... ......+|++.|-.++|+| |.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44455666666778888999999999999999999873 3345778999999999987 5999999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
...+ +++.......+.+ -+.|+|+|++++.++.|..|...|.++. +.....+....+..+. |+.++.
T Consensus 94 ~r~~--k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~--~~~~~~~~~~e~ne~~-------w~~~nd- 160 (313)
T KOG1407|consen 94 IRSG--KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY--KIVNEEQFKFEVNEIS-------WNNSND- 160 (313)
T ss_pred eccC--cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc--ceeehhcccceeeeee-------ecCCCC-
Confidence 9999 7888776555554 4789999999999999999999999885 3444444444455544 443333
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
.++.....|.|.|.....-+.+ ..+..|.....+|.|+|+|+|+++|
T Consensus 161 ---------------------------~Fflt~GlG~v~ILsypsLkpv------~si~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 161 ---------------------------LFFLTNGLGCVEILSYPSLKPV------QSIKAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred ---------------------------EEEEecCCceEEEEeccccccc------cccccCCcceEEEEECCCCceEeec
Confidence 2444555688888887766665 6778899999999999999999999
Q ss_pred ECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCC
Q 002234 855 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 931 (949)
Q Consensus 855 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg 931 (949)
+.|- .+.+||+...-+.+.+. +.-+|..+.||-| +|++||+|..|-|=++++|..+..++ +.++-..++|+|..
T Consensus 208 sADA-lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 208 SADA-LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKR 284 (313)
T ss_pred cccc-eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCC
Confidence 9996 99999999999999998 7889999999988 89999999999999999999999995 88899999999999
Q ss_pred CEEEEEeCC---------CcEEEEeC
Q 002234 932 EFLVIGTSD---------GRIQAWGL 948 (949)
Q Consensus 932 ~~L~sgs~D---------g~I~iWdl 948 (949)
.+||-+++| |+|++|.+
T Consensus 285 ~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 285 PLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ceeeEEecCCCCccccccceeEEecC
Confidence 999887754 67888865
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.5e-26 Score=244.50 Aligned_cols=241 Identities=19% Similarity=0.284 Sum_probs=209.0
Q ss_pred eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 663 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
.+..|...|.++.|+|. .++++-.+|.|.||+.++. ..++.+.-..-+|.+..|-.--+++++||+|..||||+.+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 44568999999999995 8999999999999999999 8899998889999999999999999999999999999999
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 820 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~ 820 (949)
+++ +......|.+-+.+++ ..|.- ..++++|+|-+|++||...+
T Consensus 86 t~e-kV~~FeAH~DyIR~ia-------vHPt~----------------------------P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 86 TGE-KVKTFEAHSDYIRSIA-------VHPTL----------------------------PYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred cce-eeEEeeccccceeeee-------ecCCC----------------------------CeEEecCCccEEEEeeccCc
Confidence 985 3334444555555554 22322 34899999999999998865
Q ss_pred ceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC----EEEEE
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE----LVYLG 894 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d----~l~sg 894 (949)
=... ..+.||...|.+++|+| |...+++++.|. +|++|.+.+..+..++. |...|+|+.+-+. ++++|
T Consensus 130 wa~~-----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr-TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 130 WACE-----QTFEGHEHYVMQVAFNPKDPNTFASASLDR-TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eeee-----eEEcCcceEEEEEEecCCCccceeeeeccc-cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 3222 67889999999999996 677899999995 99999999999999998 7899999999653 89999
Q ss_pred ECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 895 CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 895 s~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++|.+|+|||..+..+++++ .||...|+.+.|+|.-..++||++||+++||+-
T Consensus 204 aDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 99999999999999999999 599999999999999999999999999999973
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=6.2e-26 Score=226.29 Aligned_cols=279 Identities=17% Similarity=0.244 Sum_probs=222.3
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecC--------------------CceeeecCCCCceEEEEEeCC--EEEE
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--KIFS 683 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--------------------~~~~~~~~h~~~V~~l~~s~d--~las 683 (949)
.|+...+...|++||..+++|+.|.+|++.|.+ ..++++..|.++|+++.|+|. .|+|
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 345566778899999999999999999999975 256778889999999999995 9999
Q ss_pred EeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEE----eecCCCceeee
Q 002234 684 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ----VHDIKDQIQNL 759 (949)
Q Consensus 684 gs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~----~~~~~~~v~~l 759 (949)
|+.|++|++||......+.-...-....+|.++.|+|.|.+|+.|..--++++||+++-+ |+. ...|.+.|+++
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQV 267 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee--EeeecCcccccccceeEE
Confidence 999999999999865222222222356789999999999999999999999999999953 222 22344444444
Q ss_pred eeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC-CC
Q 002234 760 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NP 838 (949)
Q Consensus 760 ~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~ 838 (949)
. +++.|+ ..++|+.||.|++||--+++++..+. ..|. ..
T Consensus 268 ~-------Ys~t~~----------------------------lYvTaSkDG~IklwDGVS~rCv~t~~-----~AH~gse 307 (430)
T KOG0640|consen 268 R-------YSSTGS----------------------------LYVTASKDGAIKLWDGVSNRCVRTIG-----NAHGGSE 307 (430)
T ss_pred E-------ecCCcc----------------------------EEEEeccCCcEEeeccccHHHHHHHH-----hhcCCce
Confidence 4 444443 37899999999999999999885432 2344 57
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCC------cEEEEEEcC--CEEEEEE-CCCeEEEEECCCCc
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS------EVRAMVVSS--ELVYLGC-KGGTVEIWDQKRQI 909 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~------~v~~l~~s~--d~l~sgs-~dg~I~vwd~~~~~ 909 (949)
|.+..|..+++|+.+.+.|. .+++|.+.+++++..+.+.+ .-+...|+. |+++.-. ..+.+.-||.+++.
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS-~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDS-TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred eeeEEEccCCeEEeecCCcc-eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh
Confidence 99999999999999999995 99999999999999987431 122333443 3655544 45789999999999
Q ss_pred EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 910 RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 910 ~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
.+..+..+|.+.++.+.-||.+..+.||+.|-.+++|-
T Consensus 387 r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 387 RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 88888889999999999999999999999999999994
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=218.91 Aligned_cols=274 Identities=16% Similarity=0.205 Sum_probs=212.2
Q ss_pred hhccccccccccEEEEec-----CCCCeEEEecC--Cceeeec--CCCCceEEEEEeCC---EEEEEeCCCcEEEEecCC
Q 002234 630 LRKYSPLAFEMVKVLSNG-----HDSSADFWNHR--ELVHVDS--SENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 697 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s-----~dg~I~vWd~~--~~~~~~~--~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t 697 (949)
-++++|+-..-..++++. ..|++.|-+.. ..+.... .-.+.+..++|+++ .+++++.||++++||...
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 344555554444444442 25778888874 2333322 34688999999984 999999999999999654
Q ss_pred CceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 698 SILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 698 ~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
.. .++..+++|...|.++.|++ +++.++++|.|++|++|+...+. .......|...|.... |+|.-
T Consensus 93 ~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~-------~sp~~---- 159 (311)
T KOG0277|consen 93 PS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAA-------FSPHI---- 159 (311)
T ss_pred CC-cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEe-------cCCCC----
Confidence 33 69999999999999999999 67788999999999999988764 2222334566666655 55543
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe-CCceEEEEEE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTS 855 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s 855 (949)
++.+++++.||++++||++..... ..+..|...+.+..|+ -+...+++++
T Consensus 160 -----------------------~nlfas~Sgd~~l~lwdvr~~gk~------~~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 160 -----------------------PNLFASASGDGTLRLWDVRSPGKF------MSIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred -----------------------CCeEEEccCCceEEEEEecCCCce------eEEEeccceeEeecccccCCcEEEecC
Confidence 346899999999999999865433 2467788899999997 4777888888
Q ss_pred CCCCEEEEEECCCCe-eEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCc-EEEEeccccccceeEEEEeC
Q 002234 856 LDGAAVKMWSTSNYN-MVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~sp 929 (949)
.|+ .|++||+++.+ ++..+. |+-.|+.+.|||. .+++++.|-+++|||...+. .+.+. ..|+..|..+.||+
T Consensus 211 vd~-~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 211 VDN-LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-DHHTEFVCGLDWSL 288 (311)
T ss_pred CCc-eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh-hccceEEecccccc
Confidence 886 99999999754 555555 7788999999997 79999999999999998665 44444 58999999999997
Q ss_pred -CCCEEEEEeCCCcEEEEe
Q 002234 930 -NEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 930 -dg~~L~sgs~Dg~I~iWd 947 (949)
++.++|+++.|+.++||+
T Consensus 289 ~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 289 FDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccCceeeecccccceeeec
Confidence 457999999999999997
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=1.8e-24 Score=233.23 Aligned_cols=242 Identities=28% Similarity=0.479 Sum_probs=203.1
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
..+.+|.++|++++|+|+ ++++++.||.|++||..++ .....+..|...+..+.|+|+++++++++.||.|++||+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 356689999999999995 9999999999999999988 677888899999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~ 819 (949)
.+++ .......+...+.++. |+++++ .+++++.||.|.+||+.+
T Consensus 81 ~~~~-~~~~~~~~~~~i~~~~-------~~~~~~----------------------------~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 81 ETGE-CVRTLTGHTSYVSSVA-------FSPDGR----------------------------ILSSSSRDKTIKVWDVET 124 (289)
T ss_pred Cccc-ceEEEeccCCcEEEEE-------EcCCCC----------------------------EEEEecCCCeEEEEECCC
Confidence 9863 1112223344555554 555433 356666699999999998
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEEC
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCK 896 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~ 896 (949)
++.. ..+..|...+.++.|+|++.++++++.|+ .|++||+++++....+. +...+.++.|+|+ .+++++.
T Consensus 125 ~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 125 GKCL------TTLRGHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred cEEE------EEeccCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 7766 34457888999999999988888887676 99999999888888877 5668999999998 7888988
Q ss_pred CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 897 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 897 dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+|.|++||..+++.+..+. .|.+.|.++.|+|++.++++++.||.|++||+.
T Consensus 198 ~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 9999999999999888884 788899999999999999998889999999973
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-25 Score=248.84 Aligned_cols=272 Identities=17% Similarity=0.292 Sum_probs=227.6
Q ss_pred ecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002234 664 DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 741 (949)
Q Consensus 664 ~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~ 741 (949)
+...+..|..++|+|. .+.++-..|.|++||.+-+ .++..|.+|.++|..++|+|++.+++|||+|..|+||+..+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 4456778999999996 9999999999999999999 89999999999999999999999999999999999999998
Q ss_pred CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec------------CCCCceEEEEeC--CEEEEEE
Q 002234 742 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYPKCLALVQ--GKVYCGC 807 (949)
Q Consensus 742 ~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~------------~~~~v~~v~~~~--~~l~sgs 807 (949)
.+ ..+....|-+-|..+. |.+.-.+|++.+.|.++++|+ |+.+|+|..|+| +.++++|
T Consensus 83 rr-clftL~GHlDYVRt~~-------FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 83 RR-CLFTLLGHLDYVRTVF-------FHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ce-ehhhhccccceeEEee-------ccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec
Confidence 63 3344457788888887 999999999999999999998 456799999997 6699999
Q ss_pred CCCcEEEEECCCCceeeeec-----------------------ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE
Q 002234 808 QDGAIQEIDLATGTFATIQT-----------------------GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 864 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~-----------------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw 864 (949)
-|.+|++||+..-+.....+ ....+.||...|+.++|||....+++|+.| +.|++|
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD-RqVKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD-RQVKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc-ceeeEE
Confidence 99999999986322111000 013567999999999999999999999866 799999
Q ss_pred ECCCCee--EEeec-CCCcEEEEEEcC--CEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 865 STSNYNM--VGSLP-TLSEVRAMVVSS--ELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 865 d~~~~~~--~~~~~-~~~~v~~l~~s~--d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
.+...+. +.+.. |..+|.++-|+| |.+++.+.|++|+|||+...+.+++++ ...+..+.++-+|..+++++|.
T Consensus 234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-rendRFW~laahP~lNLfAAgH- 311 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-RENDRFWILAAHPELNLFAAGH- 311 (1202)
T ss_pred EeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee-ccCCeEEEEEecCCcceeeeec-
Confidence 9865432 23333 789999999999 599999999999999999999999996 4456899999999999777665
Q ss_pred CCcEEEEeC
Q 002234 940 DGRIQAWGL 948 (949)
Q Consensus 940 Dg~I~iWdl 948 (949)
|+-+.||.+
T Consensus 312 DsGm~VFkl 320 (1202)
T KOG0292|consen 312 DSGMIVFKL 320 (1202)
T ss_pred CCceEEEEE
Confidence 555566654
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.7e-25 Score=227.13 Aligned_cols=243 Identities=21% Similarity=0.324 Sum_probs=194.0
Q ss_pred cCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCC---CEEEEEeCCCcEEEEECCC
Q 002234 665 SSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG---EMLYSGSLDKTARVWSIGN 741 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg---~~L~Sgs~Dg~I~vWd~~~ 741 (949)
..|.+.|.++...++.|+||++||++++||..+. ...++.||+++|.+++|.-.. ..++++|.|.++++|.++.
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 4589999999999999999999999999999864 889999999999998886533 3599999999999999988
Q ss_pred CeeEE--E-EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC
Q 002234 742 EEIHC--V-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 742 ~~~~~--~-~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~ 818 (949)
++... . ....|+..|.++. ..++|.. +++|+.|.+|.+|+..
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVs-------v~~sgtr----------------------------~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVS-------VDSSGTR----------------------------FCSGSWDTMLKIWSVE 223 (423)
T ss_pred chhhhhHHhHhcccccceeEEE-------ecCCCCe----------------------------EEeecccceeeecccC
Confidence 75211 1 1125677777776 5666665 5555556666666521
Q ss_pred CCc-------------------eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCC
Q 002234 819 TGT-------------------FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 879 (949)
Q Consensus 819 ~~~-------------------~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~ 879 (949)
+.. ......+...+.||..+|.++.|++ ...+.+++.|. +|+.||+.++..+.++....
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~~k 301 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTTNK 301 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeecCc
Confidence 110 0001112235789999999999998 55667888884 99999999999999999999
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECCCCc---EEEEeccccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI---RIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~---~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl 948 (949)
.++++..+|. .+++|+.|..+++||.+++. ..+++ .+|.+.|.++.|+|.. ..|++|+.||++++||+
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee-ecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 9999999997 89999999999999998764 45566 6999999999999976 56789999999999997
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.6e-25 Score=211.12 Aligned_cols=242 Identities=17% Similarity=0.280 Sum_probs=200.4
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
...++..|+++|.++.|+.+ +.++++.|.+|++|+...+ .+++++.+|...|..++.+.|...+++|+.|+.|.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 35567889999999999975 9999999999999999999 8999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
|+++|+ .......|...|+.+. |+.+.. -+++|+.|.++++||.
T Consensus 87 DV~TGk-v~Rr~rgH~aqVNtV~-------fNeesS----------------------------Vv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 87 DVNTGK-VDRRFRGHLAQVNTVR-------FNEESS----------------------------VVASGSFDSSVRLWDC 130 (307)
T ss_pred EcccCe-eeeecccccceeeEEE-------ecCcce----------------------------EEEeccccceeEEEEc
Confidence 999996 3334445667777766 444433 3889999999999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEE
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC 895 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs 895 (949)
++.....+ ..+..-...|.++..... -++.+|.|| +++.||++.|+....+ ...+|+++.|++| ...+++
T Consensus 131 RS~s~ePi----Qildea~D~V~Si~v~~h--eIvaGS~DG-tvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 131 RSRSFEPI----QILDEAKDGVSSIDVAEH--EIVAGSVDG-TVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred ccCCCCcc----chhhhhcCceeEEEeccc--EEEeeccCC-cEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEee
Confidence 98765432 344445678888887754 457788887 9999999998765433 3678999999998 788999
Q ss_pred CCCeEEEEECCCCcEEEEeccccccce--eEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 896 KGGTVEIWDQKRQIRIETLQTGTSGKV--QCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 896 ~dg~I~vwd~~~~~~~~~l~~~h~~~I--~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
-|+++++.|..+|+.++.++ ||.+.= ...+++.....+++|++||.|++||+
T Consensus 203 l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 203 LDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 99999999999999999995 887633 34456666789999999999999997
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.8e-24 Score=248.22 Aligned_cols=281 Identities=13% Similarity=0.164 Sum_probs=228.9
Q ss_pred cccccccccEEEEec--CCCCeEEEecCC--------------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEe
Q 002234 633 YSPLAFEMVKVLSNG--HDSSADFWNHRE--------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 694 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s--~dg~I~vWd~~~--------------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd 694 (949)
...+++||.+++||| .|+.+++|+.+. .+.....|.+.|+|+.|+|| +||+|++|+.|.||+
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE 97 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence 456778999999999 999999998752 23445679999999999998 999999999999999
Q ss_pred cCC----------C------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceee
Q 002234 695 GRG----------S------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 758 (949)
Q Consensus 695 ~~t----------~------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~ 758 (949)
... | .++++..+.+|.+.|..++|+|++.+|+|+|.|++|.+|+..+.+ .......|.+.|..
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKG 176 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKG 176 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce-eeeeeecccccccc
Confidence 872 1 356888999999999999999999999999999999999999973 34444567778888
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
+. |.|-|++ +++-+.|++|++|++.+-........+..-.+-..-
T Consensus 177 vs-------~DP~Gky----------------------------~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 177 VS-------WDPIGKY----------------------------FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred eE-------ECCccCe----------------------------eeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 77 8888886 777788889999987664444433332222333456
Q ss_pred EEEEEEeCCceEEEEEEC---CCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-------------------EEEEEE
Q 002234 839 VHALQVHNGLVYTASTSL---DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-------------------LVYLGC 895 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~---Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-------------------~l~sgs 895 (949)
+..+.|+|||.++++... .+.++.|.+-.+++.-..+- |..++.++.|+|. .+++|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 889999999999998632 12489999998888776666 8899999999862 367899
Q ss_pred CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 896 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 896 ~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.|++|.||.....+++.....-....|..++|+|||..|+.+|.||+|.+..++
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 999999999998888877754455689999999999999999999999998763
No 61
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.8e-23 Score=239.93 Aligned_cols=254 Identities=17% Similarity=0.230 Sum_probs=189.7
Q ss_pred cccccccEEEEecCCCCeEEEecCC---------------ceeeecCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecC
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHRE---------------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~---------------~~~~~~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~ 696 (949)
..+.++..+++++.+.....|+... ....+.+|.+.|++++|+| + +|++|+.||+|++||+.
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 3444555566666666666665431 1224678999999999998 4 89999999999999997
Q ss_pred CCce-----eeeEEecccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe
Q 002234 697 GSIL-----HLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 697 t~~~-----~~i~~l~~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp 770 (949)
++.. .++..+.+|...|.+++|+|++ ++|++|+.|++|++||+.+++. ......|...|.++. |+|
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla-------~sp 178 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLE-------WNL 178 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEE-------EEC
Confidence 6521 3577889999999999999975 7999999999999999998852 222334667787777 888
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC-EEEEEEeCCce
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP-VHALQVHNGLV 849 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~ 849 (949)
+|.. +++|+.||+|++||+++++.+. .+.+|... +..+.|.+++.
T Consensus 179 dG~l----------------------------Latgs~Dg~IrIwD~rsg~~v~------tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 179 DGSL----------------------------LCTTSKDKKLNIIDPRDGTIVS------SVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCE----------------------------EEEecCCCEEEEEECCCCcEEE------EEecCCCCcceEEEEcCCCC
Confidence 7764 8899999999999999998763 44556554 44677887766
Q ss_pred EEEEEEC---CCCEEEEEECCCCe-eEEeec--CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEecccccc
Q 002234 850 YTASTSL---DGAAVKMWSTSNYN-MVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSG 920 (949)
Q Consensus 850 ~l~s~s~---Dg~~I~iwd~~~~~-~~~~~~--~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~ 920 (949)
.+++++. .++.|++||+++.. +..... ....+....|+++ .+++|+ .||.|++||+.+++.+......+..
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 6666542 12599999998754 333333 2345556677877 677776 5999999999999988777655667
Q ss_pred ceeEEEEeCC
Q 002234 921 KVQCMALDDN 930 (949)
Q Consensus 921 ~I~~l~~spd 930 (949)
++..++|.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 8889999885
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-24 Score=236.75 Aligned_cols=260 Identities=20% Similarity=0.295 Sum_probs=217.1
Q ss_pred EEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc-cCCCEEEE
Q 002234 642 KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE-HTKAVTGL 716 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~-H~~~V~~v 716 (949)
.++.| ....|.+|+..+ .......+...|+++.|+++ +|+.|..+|+|.|||..+. +.+..+.+ |...|-++
T Consensus 190 ~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 190 VLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEE
Confidence 44443 455788999873 23334444899999999986 9999999999999999988 78888888 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEE
Q 002234 717 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCL 796 (949)
Q Consensus 717 ~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v 796 (949)
+|. +..+.+|+.||.|..+|++..+........|...|..+. |++|+.+
T Consensus 267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk-------ws~d~~~---------------------- 315 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK-------WSPDGNQ---------------------- 315 (484)
T ss_pred ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE-------ECCCCCe----------------------
Confidence 997 678999999999999999987622222556788888888 8888875
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC-ceEEEEE-ECCCCEEEEEECCCCeeEEe
Q 002234 797 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTAST-SLDGAAVKMWSTSNYNMVGS 874 (949)
Q Consensus 797 ~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~-s~Dg~~I~iwd~~~~~~~~~ 874 (949)
+++|+.|+.+.|||....... ..+..|...|..++|+|- ...+|+| +..+++|++||+.++..+..
T Consensus 316 ------lASGgnDN~~~Iwd~~~~~p~------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 316 ------LASGGNDNVVFIWDGLSPEPK------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred ------eccCCCccceEeccCCCcccc------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 889999999999999666655 567889999999999973 3334443 33336999999999999999
Q ss_pred ecCCCcEEEEEEcCCE--EEE--EECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 875 LPTLSEVRAMVVSSEL--VYL--GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 875 ~~~~~~v~~l~~s~d~--l~s--gs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.....|.++.|++.+ +++ |..++.|.||+..+.+++..+ .+|...|..+++||||..+++|+.|.++++|++
T Consensus 384 vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 384 VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 9999999999999983 444 456789999999999999999 599999999999999999999999999999986
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.6e-23 Score=259.56 Aligned_cols=254 Identities=12% Similarity=0.199 Sum_probs=200.4
Q ss_pred CCCeEEEecCCce-------eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc------eeeeEEecccCCCE
Q 002234 649 DSSADFWNHRELV-------HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI------LHLIQQIREHTKAV 713 (949)
Q Consensus 649 dg~I~vWd~~~~~-------~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~------~~~i~~l~~H~~~V 713 (949)
+|.+++|+..... ..+..|.+.|++++|+|+ ++++|+.||+|+|||..+.. ..+...+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 5667777776321 123458999999999996 99999999999999976420 01233343 45689
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCCEEEEEEecCeEEEecCCC
Q 002234 714 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 714 ~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~~l~~~~~~g~i~~~~~~~ 791 (949)
.+++|++ ++.+|++++.||+|++||+.+++ .......|.+.|.++. |+| ++.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~-------~~p~~~~------------------ 589 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSID-------YSSADPT------------------ 589 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEE-------EcCCCCC------------------
Confidence 9999988 57899999999999999999874 2233345666777776 654 333
Q ss_pred CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe-CCceEEEEEECCCCEEEEEECCCCe
Q 002234 792 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 792 ~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
.|++|+.||+|++||++++.....+ ..+ ..+.++.|+ +++.++++++.|| .|++||++++.
T Consensus 590 ----------~L~Sgs~Dg~v~iWd~~~~~~~~~~------~~~-~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~ 651 (793)
T PLN00181 590 ----------LLASGSDDGSVKLWSINQGVSIGTI------KTK-ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPK 651 (793)
T ss_pred ----------EEEEEcCCCEEEEEECCCCcEEEEE------ecC-CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCC
Confidence 4889999999999999988876432 223 578999995 6789999999997 99999998765
Q ss_pred -eEEeec-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCC------CcEEEEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 871 -MVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 871 -~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~------~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
....+. |...|.++.|.+. ++++++.|++|++||+.. ..++..+ .+|...+..++|+|++++|++|+.||
T Consensus 652 ~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 445554 7789999999754 899999999999999974 3567788 58999999999999999999999999
Q ss_pred cEEEEeC
Q 002234 942 RIQAWGL 948 (949)
Q Consensus 942 ~I~iWdl 948 (949)
+|++|+.
T Consensus 731 ~v~iw~~ 737 (793)
T PLN00181 731 EVFVYHK 737 (793)
T ss_pred EEEEEEC
Confidence 9999985
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=3e-25 Score=234.54 Aligned_cols=265 Identities=15% Similarity=0.185 Sum_probs=218.0
Q ss_pred HhhHhhhccccccc-cccEEEEecCCCCeEEEecC---CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC
Q 002234 625 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 625 ~~~~~~~~~~~~~~-~~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~ 698 (949)
.+|.+-+...-+.+ .+..|+++|.|+.|+||+.. .+++++.+|..+|.+++|+++ .+.|+|.|+.|++||++||
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 34444444434444 67899999999999999986 589999999999999999996 9999999999999999999
Q ss_pred ceeeeEEecccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 777 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~ 777 (949)
+++..+. -...++|+.|+||+ +.+++|+.|+.|+.||+++++ .......|-+.|..+. |-++|+.+++
T Consensus 291 --~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~-------F~~~g~rFis 359 (503)
T KOG0282|consen 291 --QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDIT-------FVDEGRRFIS 359 (503)
T ss_pred --eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeE-------EccCCceEee
Confidence 7888874 35578999999987 899999999999999999986 1222234567788887 9999999999
Q ss_pred EEecCeEEEecCCC-------------CceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCC--CEE
Q 002234 778 HLRNGKTKLLNSSK-------------YPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN--PVH 840 (949)
Q Consensus 778 ~~~~g~i~~~~~~~-------------~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V~ 840 (949)
.+.++.+++|+... ...|+..+| +.+++-+.|+.|.+|.+...-.. ...+.+.||.. .-.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~---nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL---NKKKRFEGHSVAGYSC 436 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc---CHhhhhcceeccCcee
Confidence 99999999998543 245666655 56888899999999986543222 12256777764 456
Q ss_pred EEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEE
Q 002234 841 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWD 904 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd 904 (949)
.+.|+||+.++++|..|| .+.+||.++-+.+..++ |...+..+.|+|- .+++++.||.|++||
T Consensus 437 ~v~fSpDG~~l~SGdsdG-~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDG-KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCc-cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 778899999999999997 99999999999999998 7799999999987 799999999999996
No 65
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=241.36 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=183.4
Q ss_pred ecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCce------eeeEEecccCCCEE
Q 002234 646 NGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL------HLIQQIREHTKAVT 714 (949)
Q Consensus 646 ~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~------~~i~~l~~H~~~V~ 714 (949)
||.++.|++|+.. ..+..+.+|.+.|.+++|+|+ +|+||+.||+|+|||+.++.. .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6778999999976 356678899999999999983 999999999999999986421 24457889999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCc
Q 002234 715 GLAILQSGEM-LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 793 (949)
Q Consensus 715 ~v~fspdg~~-L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v 793 (949)
+++|+|++.. ++|++.||+|++||+++++.. ....+...|.++. |+|+|..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--~~i~~~~~V~Sls-------wspdG~l------------------- 181 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--FQINMPKKLSSLK-------WNIKGNL------------------- 181 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--EEEecCCcEEEEE-------ECCCCCE-------------------
Confidence 9999998875 579999999999999998522 2223456677776 8888774
Q ss_pred eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEE-----EEeCCceEEEEEECCC---CEEEEEE
Q 002234 794 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL-----QVHNGLVYTASTSLDG---AAVKMWS 865 (949)
Q Consensus 794 ~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l-----~~~~~~~~l~s~s~Dg---~~I~iwd 865 (949)
+++++.|+.|++||++++..+ ..+.+|.+.+... .|++++.++++++.|+ ++|++||
T Consensus 182 ---------Lat~s~D~~IrIwD~Rsg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 182 ---------LSGTCVGKHMHIIDPRKQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred ---------EEEEecCCEEEEEECCCCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 778889999999999999877 3456677655433 3457888888888775 4799999
Q ss_pred CCC-CeeEEeecCCCcEEE--EEEcCC---EEEEEECCCeEEEEECCCCcEEEEec-cccccceeEEEEeCCC
Q 002234 866 TSN-YNMVGSLPTLSEVRA--MVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNE 931 (949)
Q Consensus 866 ~~~-~~~~~~~~~~~~v~~--l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~-~~h~~~I~~l~~spdg 931 (949)
+++ ..++..+.++..... ..+.++ ++++|+.|++|++|++..+. +..+. ..+..++.+++|.|+.
T Consensus 247 lr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 247 LKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 995 566666654333222 233333 78899999999999998775 33332 2355688999999964
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=243.76 Aligned_cols=203 Identities=15% Similarity=0.278 Sum_probs=168.7
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
+++..|.||++.|..+.||.+ ++|+|+|.|+|||+|++... .|+..+.|.+.|+|++ |+|-..
T Consensus 360 kP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--~CL~~F~HndfVTcVa-------FnPvDD------- 422 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--ECLKVFSHNDFVTCVA-------FNPVDD------- 422 (712)
T ss_pred cchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--ceeeEEecCCeeEEEE-------ecccCC-------
Confidence 456677899999999999965 58999999999999999976 7777787788887777 666443
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
+++++|+-||.|++|++...+....... ..-|++++|.|+|.+.+.|+.+| .
T Consensus 423 --------------------ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-------~~lITAvcy~PdGk~avIGt~~G-~ 474 (712)
T KOG0283|consen 423 --------------------RYFISGSLDGKVRLWSISDKKVVDWNDL-------RDLITAVCYSPDGKGAVIGTFNG-Y 474 (712)
T ss_pred --------------------CcEeecccccceEEeecCcCeeEeehhh-------hhhheeEEeccCCceEEEEEecc-E
Confidence 3699999999999999998887644332 26799999999999999999998 9
Q ss_pred EEEEECCCCeeEEeec---C------CCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEecccccc-ceeEEEE
Q 002234 861 VKMWSTSNYNMVGSLP---T------LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMAL 927 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~---~------~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~-~I~~l~~ 927 (949)
+++|++...+....+. + +..|+++.|.|. .+++.+.|..|+|||.++..++..|+..+.. .-....|
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASF 554 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeE
Confidence 9999999877765543 1 347999999754 6899999999999999999999888644433 3355679
Q ss_pred eCCCCEEEEEeCCCcEEEEeC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.||++|+++++|..|++|++
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccCCCEEEEeecCceEEEEeC
Confidence 999999999999999999996
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.9e-24 Score=226.67 Aligned_cols=249 Identities=20% Similarity=0.293 Sum_probs=206.5
Q ss_pred CCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-CCCE
Q 002234 650 SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEM 724 (949)
Q Consensus 650 g~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~ 724 (949)
-.+.+|+.. .....+......|++++|-.| +++.|+..|.|+|+|..+. ..++.+.+|+.+|..+.|+| ++..
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~ 125 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTM 125 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeE
Confidence 357788876 345556677889999999976 8999999999999997775 67889999999999999999 5778
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 725 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 725 L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
+++|++|+.+++||+.+... ......|.+.|.+.+ |+|.... .++
T Consensus 126 l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~-------~~~~~~h---------------------------ivv 170 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGD-------ISPANDH---------------------------IVV 170 (487)
T ss_pred EEecCCCceEEEEEcCCcEE-EEEecCCcceeEeec-------cccCCCe---------------------------EEE
Confidence 99999999999999999753 334455566666555 4444332 489
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC-eeEEeec-CCCcEE
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVR 882 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~ 882 (949)
+|+.||.|++||+++.... ..-..|..||..+.+-|.+..+++++ |..|++||+.+| +.+..+. |+..|+
T Consensus 171 tGsYDg~vrl~DtR~~~~~------v~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSR------VVELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred ecCCCceEEEEEeccCCce------eEEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEE
Confidence 9999999999999987422 22346889999999999999999987 569999999854 5555555 999999
Q ss_pred EEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 883 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 883 ~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
|+.+..+ .+++|+-|+.|+|||+.+.+.++.+. ..++|.+++.+||++.++.|..||.+.+
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeee
Confidence 9999886 89999999999999999999999985 6789999999999999999999998765
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=9.5e-24 Score=215.99 Aligned_cols=271 Identities=13% Similarity=0.204 Sum_probs=218.3
Q ss_pred CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
.....+..|+++|.+++.+|+ +++||+.|..-.+|+..++ ....++.+|++.|+++.|+.||.+||||+.+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 445688899999999999996 9999999999999999999 688899999999999999999999999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC------------CceEEEEeC--CE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GK 802 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~------------~v~~v~~~~--~~ 802 (949)
|+..++..+.... ..+..+.+ +.|.|.+..++.++.||.+-+|..++ .+.+=.|.| .+
T Consensus 133 ~~~stg~~~~~~~----~e~~dieW----l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD----QEVEDIEW----LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR 204 (399)
T ss_pred EEcccCceEEEee----cccCceEE----EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCce
Confidence 9999986433332 22333331 33899999999999999999997544 344444443 46
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-----
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT----- 877 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~----- 877 (949)
+++|..||+|++||+.+++........ ...+.+++.++..+..+..++.++ .+++-+..+++.+.....
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~-----e~~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQA-----EGLELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEeccc-----ccCcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCCCccc
Confidence 999999999999999999887544322 134667788888888888888876 788888777777665542
Q ss_pred ----CCcEEEEEE---cCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 878 ----LSEVRAMVV---SSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 878 ----~~~v~~l~~---s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...+.++.+ +.. ..++|+-||+|.|||+...++.+.+. |...|..+.|-+ ..+|++++.||+|+.||.
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 233444444 444 68899999999999999988777774 888999999998 789999999999999995
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=210.62 Aligned_cols=258 Identities=17% Similarity=0.245 Sum_probs=209.8
Q ss_pred EEEecCCCCeEEEecC----------C----ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 643 VLSNGHDSSADFWNHR----------E----LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 643 l~s~s~dg~I~vWd~~----------~----~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
++.|+....|--++.. + ....+..|.++|++++.+..+++|||.|-+|+|||+.+. ..+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~--~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR--KQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch--hhhcceec
Confidence 5566666655444432 0 234567899999999999999999999999999999998 78888999
Q ss_pred cCCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 709 HTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 709 H~~~V~~v~fspdg~--~L~Sgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
|.+.|+++.|.++-. .|++|+.||.|.+|+...= .++.. ..|.+.|+.++ ..|.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~ls-------iHPS~KL----------- 141 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLS-------IHPSGKL----------- 141 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeE-------ecCCCce-----------
Confidence 999999999999754 8999999999999998774 33333 35667788887 6777764
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
-++.+.|+.++.||+-+|+....... ...-+.+.|+|.|.+++..+.+ .|-+|.
T Consensus 142 -----------------ALsVg~D~~lr~WNLV~Gr~a~v~~L-------~~~at~v~w~~~Gd~F~v~~~~--~i~i~q 195 (362)
T KOG0294|consen 142 -----------------ALSVGGDQVLRTWNLVRGRVAFVLNL-------KNKATLVSWSPQGDHFVVSGRN--KIDIYQ 195 (362)
T ss_pred -----------------EEEEcCCceeeeehhhcCccceeecc-------CCcceeeEEcCCCCEEEEEecc--EEEEEe
Confidence 45678899999999999887644321 1234459999999988887766 699999
Q ss_pred CCCCeeEEeecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEE--eCCCCEEEEEeCCCc
Q 002234 866 TSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DDNEEFLVIGTSDGR 942 (949)
Q Consensus 866 ~~~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~--spdg~~L~sgs~Dg~ 942 (949)
+.+-.....+.....+.++.|-.. .+++|.+|+.|.+||.++..+...+ .+|..+|.++.+ .|++.+|+|+|+||.
T Consensus 196 ~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 196 LDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred cccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCceEEEEeccCce
Confidence 998888777777777888877554 9999999999999999999888888 599999999985 467899999999999
Q ss_pred EEEEeCC
Q 002234 943 IQAWGLS 949 (949)
Q Consensus 943 I~iWdl~ 949 (949)
|+|||++
T Consensus 275 I~vWd~~ 281 (362)
T KOG0294|consen 275 IKVWDID 281 (362)
T ss_pred EEEEEcc
Confidence 9999984
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3.1e-24 Score=227.54 Aligned_cols=284 Identities=15% Similarity=0.242 Sum_probs=211.6
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCC-------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~ 696 (949)
.+.+++....+.+.|.++++||.|.+|++||+.. ..++.......|.++.|++. +|+..+.....+|+|-+
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 3445666677778899999999999999999872 12223335678999999984 77777777789999987
Q ss_pred CCce-------ee---eEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCe--eEEEEeecCCCceeeeeecc
Q 002234 697 GSIL-------HL---IQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 697 t~~~-------~~---i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~ 763 (949)
...+ +. +..-+||...++|.+|+|+ ...++|+|.||++|+||++..+ .+.+...... ...+.+
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~----g~Rv~~ 320 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG----GKRVPV 320 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC----CcccCc
Confidence 6521 01 1123689999999999995 5689999999999999998765 2222222111 112223
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCC--CEEE
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN--PVHA 841 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~ 841 (949)
..+.|++||+. |++|+.||+|++||..+......+ ..-..|.. .|++
T Consensus 321 tsC~~nrdg~~----------------------------iAagc~DGSIQ~W~~~~~~v~p~~---~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 321 TSCAWNRDGKL----------------------------IAAGCLDGSIQIWDKGSRTVRPVM---KVKDAHLPGQDITS 369 (641)
T ss_pred eeeecCCCcch----------------------------hhhcccCCceeeeecCCcccccce---EeeeccCCCCceeE
Confidence 34458888874 788999999999997544322111 22345655 8999
Q ss_pred EEEeCCceEEEEEECCCCEEEEEECCCCe-eEEeec---CCCcEEEEEEcCC--EEEEEE------CCCeEEEEECCCCc
Q 002234 842 LQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP---TLSEVRAMVVSSE--LVYLGC------KGGTVEIWDQKRQI 909 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~-~~~~~~---~~~~v~~l~~s~d--~l~sgs------~dg~I~vwd~~~~~ 909 (949)
|.|+++++++++-+.|+ ++++||+++.+ ++.... ...+-+.++|||+ .|++|+ ..|++.+||..+..
T Consensus 370 i~FS~dg~~LlSRg~D~-tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDD-TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEeccccchhhhccCCC-ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999999999997 99999999754 444433 3566778999999 677775 35789999999999
Q ss_pred EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 910 RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 910 ~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
.++++. -....|..+.|+|.-+.|+.|+.||+++||
T Consensus 449 ~v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 449 TVYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEec-CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 999985 446678889999999999999999999986
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.9e-25 Score=222.83 Aligned_cols=262 Identities=15% Similarity=0.215 Sum_probs=208.2
Q ss_pred eecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 663 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
.+.||.+.|.|++-+|+ .++||+.||.|++||+.+. .++.+++.|.+.|..+++.. ..++++|+|++|+.|.+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999997 7999999999999999998 89999999999999999986 67999999999999998
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEeC---CEEE
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ---GKVY 804 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~~---~~l~ 804 (949)
+.. .......+..+..+........|...|.. +.+|+. ...+.++.|++ +.|+
T Consensus 137 ~~~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~---------i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 137 DGP---PLHTILGKSVYLGIDHHRKNSVFATCGEQ---------IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCC---cceeeeccccccccccccccccccccCce---------eeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 874 33333344555555543333345555543 455553 24578888887 3478
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe-eEEeec-CCCcEE
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSEVR 882 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~ 882 (949)
++..|++|.+||++++..+.... ....-+.|+|+|+...+++++.| ..+..||++... ++..+. |.+.|.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi-------~~mRTN~IswnPeafnF~~a~ED-~nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI-------LTMRTNTICWNPEAFNFVAANED-HNLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred eeccCCceEEEecccCCccceee-------eeccccceecCccccceeecccc-ccceehhhhhhcccchhhcccceeEE
Confidence 88899999999999998874322 12356789999988888888887 599999998743 455555 778999
Q ss_pred EEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 883 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 883 ~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+.|||. -+++||.|.+|+||..+.+.....+....-..|.++.||.|.+++++||+|+.|++|.-
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999998 69999999999999999887655553333457999999999999999999999999963
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1e-23 Score=242.07 Aligned_cols=232 Identities=29% Similarity=0.495 Sum_probs=202.4
Q ss_pred CCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEE-ecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 002234 666 SENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 666 ~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~-l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
.|...+.+..|.++++++++.|++|++||..++ ..+.. +.||.+.|++++|..-+.++++||.|.++++||..+|+
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 367788999999889999999999999999999 66776 99999999999998878899999999999999999984
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
|..... .|...+.++...+..+++|+.|.+|++|++.++..+
T Consensus 283 -C~~~l~------------------------------------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l- 324 (537)
T KOG0274|consen 283 -CTHSLQ------------------------------------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL- 324 (537)
T ss_pred -EEEEec------------------------------------CCCceEEEEEccCceEeeccCCceEEEEeccCcceE-
Confidence 333221 233344555555667888999999999999999998
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcC-CEEEEEECCCeEEE
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS-ELVYLGCKGGTVEI 902 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~-d~l~sgs~dg~I~v 902 (949)
..+.+|..+|+++..+ +.++++++.|+ +|++||+.+++++.++. |...|.++.+.+ +.+++|+.|++|++
T Consensus 325 -----~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 325 -----NLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKV 396 (537)
T ss_pred -----EEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEe
Confidence 4555699999999998 77889999997 99999999999999999 789999999999 89999999999999
Q ss_pred EECCCC-cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 903 WDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 903 wd~~~~-~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
||+.+. +++.++ .+|.+.+.++.+ .+++|++++.||+|++||..
T Consensus 397 Wdl~~~~~c~~tl-~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 397 WDLRTKRKCIHTL-QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred ecCCchhhhhhhh-cCCccccccccc--ccceeEeccccccEEEeecc
Confidence 999999 999999 589988877766 47899999999999999963
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.6e-23 Score=207.77 Aligned_cols=265 Identities=14% Similarity=0.214 Sum_probs=208.6
Q ss_pred cCCceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCC-CceeeeEEecccCCCEEEEEEecCCCEEEEEeCCC
Q 002234 657 HRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 732 (949)
Q Consensus 657 ~~~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg 732 (949)
..+...+.....+.|.+++|||. +++.||.||+||+|++.. |.... +....|.++|.+++|+.||..+++|+.|+
T Consensus 16 ~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 16 PNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred cccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCC
Confidence 33445566678899999999993 788999999999999986 33222 55667999999999999999999999999
Q ss_pred cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC--EEEEEEecCeEEEecCCCC-----------ceEEEEe
Q 002234 733 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA--GIKVHLRNGKTKLLNSSKY-----------PKCLALV 799 (949)
Q Consensus 733 ~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~--~l~~~~~~g~i~~~~~~~~-----------v~~v~~~ 799 (949)
.+++||+.++ +......|..+|..+. |.+... .+++++||.++++||.... +.++...
T Consensus 95 ~~k~wDL~S~--Q~~~v~~Hd~pvkt~~-------wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 95 QAKLWDLASG--QVSQVAAHDAPVKTCH-------WVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL 165 (347)
T ss_pred ceEEEEccCC--CeeeeeecccceeEEE-------EecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc
Confidence 9999999999 4555556688999888 555544 8999999999999997543 3333333
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE--eec-
Q 002234 800 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG--SLP- 876 (949)
Q Consensus 800 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~--~~~- 876 (949)
...++++..++.|.+|+++++..... +....-.-.+.+|+..++..-.+.|+.+| .+-|..+..+.+.. +|+
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k----~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFK----RIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhh----hhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEE
Confidence 45688999999999999987764421 11112234688999988777778888887 89999888763333 333
Q ss_pred CC---------CcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE
Q 002234 877 TL---------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 877 ~~---------~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg 937 (949)
|. ..|++++|+|. .+++++.||+..+||.+....+.+.. .|..+|++.+|+.+|.+++-+
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEE
Confidence 32 24788999998 79999999999999999888888874 788999999999999988755
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-24 Score=235.39 Aligned_cols=275 Identities=21% Similarity=0.309 Sum_probs=220.4
Q ss_pred ccccEEEEecCCCCeEEEecCC--------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 638 FEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 638 ~~~~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
+.++||++||.||.|++|+..+ ....+..|.+.|..+....+ .|+|+|.|-+|++|+...+..-+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 3466899999999999999862 25567789999999887764 8999999999999999876446888999
Q ss_pred ccCCCEEEEEE-ecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 708 EHTKAVTGLAI-LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 708 ~H~~~V~~v~f-spdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
.|.+.|.|+++ -++...+||||-|+.|.+||++++.-..+..+. .-.+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~-------------------------- 167 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVNSLG-------------------------- 167 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-ccccccCC--------------------------
Confidence 99999999999 778899999999999999999987311111100 00111110
Q ss_pred ecCCCCceEEEEeCC--EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE
Q 002234 787 LNSSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 864 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw 864 (949)
-.+...|.+++.++. .+++|+..+.+++||.++++.+ .++.||...|..+..++||..++++|.|| +|++|
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki------mkLrGHTdNVr~ll~~dDGt~~ls~sSDg-tIrlW 240 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI------MKLRGHTDNVRVLLVNDDGTRLLSASSDG-TIRLW 240 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEeccccccce------eeeeccccceEEEEEcCCCCeEeecCCCc-eEEee
Confidence 023345556666553 4889999999999999999887 56779999999999999999999999997 99999
Q ss_pred ECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc-EEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 865 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 865 d~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
|+...+++.++. |...|+++..+|+ .+++|+.||.|..=|+.+.. ....++ ...+|..+..+.+.+-+-+++.|
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec--CCCchhhhhhccccCCceeeecc
Confidence 999999999988 8888999999998 79999999999999998853 333333 34467888777555556788899
Q ss_pred CcEEEEeC
Q 002234 941 GRIQAWGL 948 (949)
Q Consensus 941 g~I~iWdl 948 (949)
+.|+-|.+
T Consensus 319 s~I~rW~~ 326 (735)
T KOG0308|consen 319 SSIKRWKL 326 (735)
T ss_pred ccceecCC
Confidence 99999975
No 75
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=6.4e-23 Score=229.23 Aligned_cols=307 Identities=16% Similarity=0.263 Sum_probs=239.8
Q ss_pred ccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
.+.+-++++.|+.+|.+.+|+.. ..+..+.++...|+++.-+| |.++.|..+|+|.+++++.+ +.+.+|+...+
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g 245 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWG 245 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEcccc
Confidence 33467789999999999999998 47888999999999999999 79999999999999999999 88999974469
Q ss_pred CEEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccc--------------------------
Q 002234 712 AVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS-------------------------- 764 (949)
Q Consensus 712 ~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~-------------------------- 764 (949)
.|++++|..||+ .+++|+..|.+.+||++..+........|.+.+....+.+.
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 999999999987 56667777999999999876443333333333322221111
Q ss_pred -------------eEEEE-eCCCEEEEEEecCeEEEe-------------------------------------------
Q 002234 765 -------------ILCFI-PQGAGIKVHLRNGKTKLL------------------------------------------- 787 (949)
Q Consensus 765 -------------~~~fs-p~g~~l~~~~~~g~i~~~------------------------------------------- 787 (949)
++.|. .+|..+.....|++.+.+
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 11111 233333333333322111
Q ss_pred ----------------------cC------------C------CCceEEEEe--CCEEEEEECCCcEEEEECCCCceeee
Q 002234 788 ----------------------NS------------S------KYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 788 ----------------------~~------------~------~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
+. . ..+.+++.+ ++..+.|+..|+|.+|++.+|-....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 10 0 123444443 56788899999999999999987643
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIW 903 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vw 903 (949)
+. .-..|..+|+.++.+.-+..+++++.+| .+++||..+..++..+.-...+.++..+.. .++.+..|-.|+++
T Consensus 486 f~---~~~ah~~~V~gla~D~~n~~~vsa~~~G-ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 486 FG---DSPAHKGEVTGLAVDGTNRLLVSAGADG-ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVV 561 (910)
T ss_pred cc---cCccccCceeEEEecCCCceEEEccCcc-eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEE
Confidence 32 2357999999999999999999999997 999999999999998888888888887654 88899999999999
Q ss_pred ECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 904 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 904 d~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|..+.+.++.+. ||.+.|++++|||||++|++++.|++|++||+.
T Consensus 562 D~~t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 562 DVVTRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred EchhhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 999999999995 999999999999999999999999999999984
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=216.07 Aligned_cols=241 Identities=20% Similarity=0.308 Sum_probs=202.1
Q ss_pred eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeE------EecccCCCEEEEEEecCCCEEEEEeCCCcE
Q 002234 663 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ------QIREHTKAVTGLAILQSGEMLYSGSLDKTA 734 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~------~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I 734 (949)
+..+....+-|..|||| ++++|+.||-|-|||..+|+.+.-. .|--|..+|.|+.|+.|..++++|+.||.|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 34566778899999998 9999999999999999998432222 233478899999999999999999999999
Q ss_pred EEEECCCCeeEEEEee--cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcE
Q 002234 735 RVWSIGNEEIHCVQVH--DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 812 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I 812 (949)
++|.+.+|. |+..+ .|...|.++. |+.|+. .+++++.|.++
T Consensus 288 KvWri~tG~--ClRrFdrAHtkGvt~l~-------FSrD~S----------------------------qiLS~sfD~tv 330 (508)
T KOG0275|consen 288 KVWRIETGQ--CLRRFDRAHTKGVTCLS-------FSRDNS----------------------------QILSASFDQTV 330 (508)
T ss_pred EEEEEecch--HHHHhhhhhccCeeEEE-------EccCcc----------------------------hhhcccccceE
Confidence 999999994 44333 4666677776 776665 48899999999
Q ss_pred EEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---CCCcEEEEEEcCC
Q 002234 813 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE 889 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~d 889 (949)
++-.+++|++. +.+.||+..|+...|.++|.++++++.|| +|++|+..+..++.+|+ ...+|+++..-|.
T Consensus 331 RiHGlKSGK~L------KEfrGHsSyvn~a~ft~dG~~iisaSsDg-tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 331 RIHGLKSGKCL------KEFRGHSSYVNEATFTDDGHHIISASSDG-TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred EEeccccchhH------HHhcCccccccceEEcCCCCeEEEecCCc-cEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 99999999998 78899999999999999999999999997 99999999999999988 3567888877554
Q ss_pred ---EEEEEECCCeEEEEECCCCcEEEEecccc--ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 ---LVYLGCKGGTVEIWDQKRQIRIETLQTGT--SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 ---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h--~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.++++...++|+|-++ .|+.++++..|. .+...+...||.|.++++.++|+.++.|.+
T Consensus 404 npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 8999999999999998 577888886543 235556679999999999999999988764
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.6e-23 Score=228.20 Aligned_cols=253 Identities=23% Similarity=0.397 Sum_probs=205.8
Q ss_pred cccEEEEecCCCCeEEEecCC----ceeeecCCCCceEE-EEEeC-C--EEEEEeCCCcEEEEecCCCceeeeEEecccC
Q 002234 639 EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLS-IACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 710 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~-l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 710 (949)
++..++++|.||++++|+... ..+.+.+|.+-|.. ++|.+ + .+++|+.|++|.+|...+. .++.++.+|.
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~ 101 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHK 101 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC--Cchhhhhccc
Confidence 456899999999999999863 34567788888877 88876 2 7999999999999999998 8999999999
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
..|.+++...++. ++|||+|.|+++|-...-. .....|...|+.+. +-|.
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~---~~l~gH~asVWAv~-------~l~e------------------- 151 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV---YSLQGHTASVWAVA-------SLPE------------------- 151 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEecchhhh---cccCCcchheeeee-------ecCC-------------------
Confidence 9999999888887 9999999999999876531 22445566666554 3333
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
+.+++||.|.+|++|.- ++.. +.+.+|.+.|..+++-++..+ ++++.|| .|+.|++ ++.
T Consensus 152 ----------~~~vTgsaDKtIklWk~--~~~l------~tf~gHtD~VRgL~vl~~~~f-lScsNDg-~Ir~w~~-~ge 210 (745)
T KOG0301|consen 152 ----------NTYVTGSADKTIKLWKG--GTLL------KTFSGHTDCVRGLAVLDDSHF-LSCSNDG-SIRLWDL-DGE 210 (745)
T ss_pred ----------CcEEeccCcceeeeccC--Cchh------hhhccchhheeeeEEecCCCe-EeecCCc-eEEEEec-cCc
Confidence 35899999999999985 5555 678899999999999988665 5777887 9999999 566
Q ss_pred eEEeec-CCCcEEEEEEc-CC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 871 MVGSLP-TLSEVRAMVVS-SE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 871 ~~~~~~-~~~~v~~l~~s-~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++..+. |...++++... ++ .++++++|++++||+.. ++.+.+. .....|+++.+-++|. +++|++||.|+||.
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 655555 88889999954 33 89999999999999987 6777774 2333799999988887 77899999999996
Q ss_pred C
Q 002234 948 L 948 (949)
Q Consensus 948 l 948 (949)
.
T Consensus 287 ~ 287 (745)
T KOG0301|consen 287 V 287 (745)
T ss_pred e
Confidence 4
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=237.75 Aligned_cols=240 Identities=20% Similarity=0.284 Sum_probs=186.6
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCC----------------------------------------------
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---------------------------------------------- 659 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~---------------------------------------------- 659 (949)
.|..-+....|+.||.|||+||.|+.|+||.+.+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4455667788999999999999999999996422
Q ss_pred ----------------ceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-C
Q 002234 660 ----------------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-S 721 (949)
Q Consensus 660 ----------------~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-d 721 (949)
++..+.||.+.|..+.||.+ +|+|++.|.|||+|++... .|+..|. |.+.|+||+|+| |
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEEe-cCCeeEEEEecccC
Confidence 12236789999999999997 9999999999999999988 8999995 999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 722 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 722 g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
.++++|||-||.||||++... +.....+..+-|+++. |.|||++
T Consensus 422 DryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvc-------y~PdGk~--------------------------- 465 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVC-------YSPDGKG--------------------------- 465 (712)
T ss_pred CCcEeecccccceEEeecCcC--eeEeehhhhhhheeEE-------eccCCce---------------------------
Confidence 899999999999999999986 5566666677787776 9999997
Q ss_pred EEEEEECCCcEEEEECCCCceeeeeccc---ccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCCeeEEeecC
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGH---RKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLPT 877 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~---~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~~~~~~~~~ 877 (949)
.++|+.+|.+++|+....+........ .+-..|. .|+.+.|.|... -+++.+.| ..|+|+|.++..++..|++
T Consensus 466 -avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnD-SrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 466 -AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSND-SRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred -EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCC-CceEEEeccchhhhhhhcc
Confidence 455566666666666555443221100 1111233 899999986544 34555667 4999999998888888873
Q ss_pred ---CCcEEEEEEcCC--EEEEEECCCeEEEEECCC
Q 002234 878 ---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 878 ---~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~ 907 (949)
...-....|+.| +|++|++|..|+||+...
T Consensus 543 ~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 543 FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 233445667666 899999999999999744
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.2e-23 Score=218.90 Aligned_cols=231 Identities=19% Similarity=0.255 Sum_probs=198.2
Q ss_pred ccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
....|..||..++.|...|.|+|||.++ .++.+.+|+.+|..+.|+|. .+++|++|+.+++||+.+. .....+
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--~v~~~l 149 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--YVQAEL 149 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--EEEEEe
Confidence 3455667899999999999999999775 77889999999999999994 8999999999999999998 456689
Q ss_pred cccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 707 REHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 707 ~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
.+|++.|.|.+|+| ++.+++|||.||+||+||++... .......|..+|.++. |-|.|..
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl-------~lpsgs~----------- 210 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVL-------ALPSGSL----------- 210 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEE-------EcCCCCE-----------
Confidence 99999999999999 56799999999999999999864 4555667788888876 7777664
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
++......|++||+.+|.... ..+..|...|+|+.+..++..+.+++.|+ .+++||
T Consensus 211 ------------------iasAgGn~vkVWDl~~G~qll-----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-~VKVfd 266 (487)
T KOG0310|consen 211 ------------------IASAGGNSVKVWDLTTGGQLL-----TSMFNHNKTVTCLRLASDSTRLLSGSLDR-HVKVFD 266 (487)
T ss_pred ------------------EEEcCCCeEEEEEecCCceeh-----hhhhcccceEEEEEeecCCceEeeccccc-ceEEEE
Confidence 333445789999999776553 34445999999999999999999999997 999999
Q ss_pred CCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCC
Q 002234 866 TSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 866 ~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~ 907 (949)
+.+.+.+..+...++|.+++++|| .++.|..||.+.+-+...
T Consensus 267 ~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 267 TTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999999999999999999997 899999999988775443
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.3e-22 Score=201.41 Aligned_cols=270 Identities=15% Similarity=0.229 Sum_probs=209.8
Q ss_pred hccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeC--CEEEEEeC--CCcEEEEecCCCceeeeE
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR--DKIFSGHS--DGTIKVWTGRGSILHLIQ 704 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~--d~lasgs~--Dg~I~vWd~~t~~~~~i~ 704 (949)
+....++.+|..+++++.|.++++||..+ .......++-.|..++|.. +.++.++. |.+||.-++.++ +.++
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylR 94 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLR 94 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEE
Confidence 34556777999999999999999999984 4555556666888888875 35555554 899999999999 8999
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.|.||...|++++.+|-++.++|+|.|++|++||++..+.+ ...... ....++|.|+|-.
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq--g~l~~~--------~~pi~AfDp~GLi---------- 154 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ--GLLNLS--------GRPIAAFDPEGLI---------- 154 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc--eEEecC--------CCcceeECCCCcE----------
Confidence 99999999999999998899999999999999999975322 111111 1223447777754
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce--eeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF--ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
++++...+.|++||+++-.. ...+. ...+.....+.+.|+|+|++++.+...+ .+.
T Consensus 155 ------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~---i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~ 212 (311)
T KOG1446|consen 155 ------------------FALANGSELIKLYDLRSFDKGPFTTFS---ITDNDEAEWTDLEFSPDGKSILLSTNAS-FIY 212 (311)
T ss_pred ------------------EEEecCCCeEEEEEecccCCCCceeEc---cCCCCccceeeeEEcCCCCEEEEEeCCC-cEE
Confidence 55566666899999986422 11111 1113456889999999999999888775 999
Q ss_pred EEECCCCeeEEeecCC---C-cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEE
Q 002234 863 MWSTSNYNMVGSLPTL---S-EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 936 (949)
Q Consensus 863 iwd~~~~~~~~~~~~~---~-~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~s 936 (949)
+.|.-+|....++... . ......|+|| ++++|+.||+|.+|+++++..+..+...+.+++.++.|+|.-.++++
T Consensus 213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s 292 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS 292 (311)
T ss_pred EEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee
Confidence 9999999988888731 2 2357788999 89999999999999999999999997558899999999998777777
Q ss_pred EeCCCcEEEE
Q 002234 937 GTSDGRIQAW 946 (949)
Q Consensus 937 gs~Dg~I~iW 946 (949)
+++ .+-+|
T Consensus 293 a~s--~l~fw 300 (311)
T KOG1446|consen 293 ASS--NLVFW 300 (311)
T ss_pred cCc--eEEEE
Confidence 654 56667
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=204.44 Aligned_cols=260 Identities=15% Similarity=0.214 Sum_probs=198.0
Q ss_pred HHhhHhhhccccccccccEEEEecCCCCeEEEecC-----CceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEEEe
Q 002234 624 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWT 694 (949)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~vWd 694 (949)
...|+.+++...+.++|.+|+|++.|++|||+... ..+..+.||.++|+.++|.+ ++|||+++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 35577788888899999999999999999999987 35667899999999999975 3999999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCC-e-eEEEEeecCCCceeeeeeccceEEEEe
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNE-E-IHCVQVHDIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~-~-~~~~~~~~~~~~v~~l~~~~~~~~fsp 770 (949)
-.++++........|...|++++|-|. |-.|++++.||.|.|.+.+.. . ........|.-.|+++. +.|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs-------wap 159 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS-------WAP 159 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee-------ecC
Confidence 999988888999999999999999994 778999999999999998765 2 22233345666677776 544
Q ss_pred C---CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC
Q 002234 771 Q---GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 847 (949)
Q Consensus 771 ~---g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 847 (949)
. |..+--+. .-...+|++|+.|..|++|+..++..... ..+.+|.+.|+.++|.|.
T Consensus 160 a~~~g~~~~~~~-----------------~~~~krlvSgGcDn~VkiW~~~~~~w~~e----~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 160 ASAPGSLVDQGP-----------------AAKVKRLVSGGCDNLVKIWKFDSDSWKLE----RTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred cCCCccccccCc-----------------ccccceeeccCCccceeeeecCCcchhhh----hhhhhcchhhhhhhhccc
Confidence 4 22110000 00013599999999999999998854321 568899999999999885
Q ss_pred ceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCC--cEEEEeccccccceeEE
Q 002234 848 LVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQ--IRIETLQTGTSGKVQCM 925 (949)
Q Consensus 848 ~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~--~~~~~l~~~h~~~I~~l 925 (949)
..+-- .++++++.||++.||..+.. .-..++.......++.+
T Consensus 219 ~gl~~------------------------------------s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 219 VGLPK------------------------------------STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred cCCCc------------------------------------eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 42100 05667777777777765421 11222222345679999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEe
Q 002234 926 ALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 926 ~~spdg~~L~sgs~Dg~I~iWd 947 (949)
.||+.|+.|+.++.|+.|.+|.
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred EEeccccEEEEecCCcEEEEEE
Confidence 9999999999999999999995
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.6e-23 Score=204.90 Aligned_cols=259 Identities=17% Similarity=0.218 Sum_probs=205.2
Q ss_pred cccccccccEEEEecCCCCeEEEecCC-ceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccC
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 710 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 710 (949)
...+++.++.|+.++.||++++|+... .......|..++.+.+|.++ .+++|+.||.|+.+|+.++ ....+..|.
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~---~~~~igth~ 94 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG---NEDQIGTHD 94 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC---cceeeccCC
Confidence 334455667888899999999999983 45556679999999999997 9999999999999999998 445566799
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
++|.||.+++....+++||+|++|++||.+.. ...... +..
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--~~~~~~-------------------------------------d~~ 135 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--VVVGTF-------------------------------------DQG 135 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEecccc--cccccc-------------------------------------ccC
Confidence 99999999998889999999999999999862 111111 223
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC-
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY- 869 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~- 869 (949)
+.|.++...++.|++|+.|..|.+||+++...... +.-..-...+.+|++.|++.=.+++|.|| .|.+=.+...
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q----~reS~lkyqtR~v~~~pn~eGy~~sSieG-RVavE~~d~s~ 210 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ----RRESSLKYQTRCVALVPNGEGYVVSSIEG-RVAVEYFDDSE 210 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchhh----hccccceeEEEEEEEecCCCceEEEeecc-eEEEEccCCch
Confidence 35566777778899999999999999998765431 22233456789999999877778888898 7776655543
Q ss_pred ---eeEEeec-C---------CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEE
Q 002234 870 ---NMVGSLP-T---------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 934 (949)
Q Consensus 870 ---~~~~~~~-~---------~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L 934 (949)
+....|+ | -.+|++++|+|- .+++|+.||.|.+||..+.+.+..+. .....|.+++|+.||..|
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG~~L 289 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDGSLL 289 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCCCeE
Confidence 2222232 2 246999999998 79999999999999999999888884 456689999999999999
Q ss_pred EEEeC
Q 002234 935 VIGTS 939 (949)
Q Consensus 935 ~sgs~ 939 (949)
|++++
T Consensus 290 Aia~s 294 (323)
T KOG1036|consen 290 AIASS 294 (323)
T ss_pred EEEec
Confidence 99875
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=204.49 Aligned_cols=242 Identities=21% Similarity=0.346 Sum_probs=193.4
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC----EEEEEeCCCcEEEEecCCCc
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSI 699 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~~ 699 (949)
+.........++.++.++++||.|-+|+|||.+. ....+..|.+.|+++.|.++ .|++|+.||.|.+|++..-
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W- 117 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW- 117 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-
Confidence 3334445667778999999999999999999984 45567789999999999985 7999999999999999776
Q ss_pred eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 700 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
.++.++++|.+.|+.++.+|.|++-++.+.|+.++.||+-.|+... +..+.-.+..+.|+|.|.++++..
T Consensus 118 -~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---------v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 118 -ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---------VLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred -EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---------eeccCCcceeeEEcCCCCEEEEEe
Confidence 8999999999999999999999999999999999999999886222 222222233344999999887776
Q ss_pred ecCeEEEec-----------CCCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE--e
Q 002234 780 RNGKTKLLN-----------SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV--H 845 (949)
Q Consensus 780 ~~g~i~~~~-----------~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~ 845 (949)
.++ +.+|. ....+.|+.|.. +.+++|..|+.|.+||..++.+. ..+.+|...|.++.+ .
T Consensus 188 ~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~------~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RNK-IDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL------TEFLAHENRVKDIASYTN 260 (362)
T ss_pred ccE-EEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc------eeeecchhheeeeEEEec
Confidence 553 44443 234577777764 78999999999999999987766 577889999999996 4
Q ss_pred CCceEEEEEECCCCEEEEEECCCC-----eeEEeecCCCcEEEEEE
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNY-----NMVGSLPTLSEVRAMVV 886 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~-----~~~~~~~~~~~v~~l~~ 886 (949)
|++.|+++.|.|| .|++||++.. +++..+..+..++|+..
T Consensus 261 ~~~~~lvTaSSDG-~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDG-FIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCc-eEEEEEccccccCCcceeEEeecCCccceeee
Confidence 7899999999998 9999999865 34444444555555544
No 84
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=3.3e-22 Score=229.61 Aligned_cols=232 Identities=17% Similarity=0.233 Sum_probs=167.0
Q ss_pred EEEEEeCCCcEEEEecCCCc----------ee-eeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002234 680 KIFSGHSDGTIKVWTGRGSI----------LH-LIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCV 747 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~----------~~-~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~ 747 (949)
.+++++.+.....|+..++. .. ....+.+|.+.|++++|+| ++++|++||.||+|++||+.++.....
T Consensus 34 ~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~ 113 (493)
T PTZ00421 34 NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113 (493)
T ss_pred CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc
Confidence 45566666666666554431 00 1124679999999999999 889999999999999999987521000
Q ss_pred EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC---CEEEEEECCCcEEEEECCCCceee
Q 002234 748 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 748 ~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
...++ ..+..|...|.++.|++ +.+++|+.|++|++||+.+++..
T Consensus 114 ----~~~~l---------------------------~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~- 161 (493)
T PTZ00421 114 ----ISDPI---------------------------VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV- 161 (493)
T ss_pred ----cCcce---------------------------EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-
Confidence 00000 01112334445555543 25899999999999999998876
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCC-cEEEEEEcCC--EEEEEE----C
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS-EVRAMVVSSE--LVYLGC----K 896 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~-~v~~l~~s~d--~l~sgs----~ 896 (949)
..+.+|...|.+++|++++.++++++.|+ +|++||+++++.+..+. |.. .+..+.|.++ .+++++ .
T Consensus 162 -----~~l~~h~~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 162 -----EVIKCHSDQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred -----EEEcCCCCceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 45667889999999999999999999996 99999999999888877 433 3456677776 555443 4
Q ss_pred CCeEEEEECCCCc-EEEEeccccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 002234 897 GGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 897 dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl~ 949 (949)
|+.|++||+++.. ++......+...+....|++|+++|++|+ .||+|++||+.
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 7999999998754 44444323344566778999999999988 49999999973
No 85
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=6.8e-22 Score=227.72 Aligned_cols=223 Identities=16% Similarity=0.186 Sum_probs=165.1
Q ss_pred EEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeE-------EEEeecCCC
Q 002234 683 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIH-------CVQVHDIKD 754 (949)
Q Consensus 683 sgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~-------~~~~~~~~~ 754 (949)
.|+.+|.|++|+.... ..+..+.+|.+.|.+++|+|+ +++|+|||.||+|++||+.++... ......|..
T Consensus 49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 3677899999998876 688899999999999999996 889999999999999999864210 001122333
Q ss_pred ceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccC
Q 002234 755 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 834 (949)
Q Consensus 755 ~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 834 (949)
.|.++. |+|++.. .+++|+.|++|++||+++++.... +.
T Consensus 127 ~V~sVa-------f~P~g~~---------------------------iLaSgS~DgtIrIWDl~tg~~~~~------i~- 165 (568)
T PTZ00420 127 KISIID-------WNPMNYY---------------------------IMCSSGFDSFVNIWDIENEKRAFQ------IN- 165 (568)
T ss_pred cEEEEE-------ECCCCCe---------------------------EEEEEeCCCeEEEEECCCCcEEEE------Ee-
Confidence 444443 4444432 267899999999999999886532 22
Q ss_pred CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEE-----EEEcCC--EEEEEECCC----eEEE
Q 002234 835 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRA-----MVVSSE--LVYLGCKGG----TVEI 902 (949)
Q Consensus 835 h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~-----l~~s~d--~l~sgs~dg----~I~v 902 (949)
|...|.+++|++++.++++++.|+ .|++||+++++.+.++. |.+.+.+ ..|+++ ++++++.|+ +|+|
T Consensus 166 ~~~~V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 166 MPKKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred cCCcEEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 456899999999999999998886 99999999999988887 5444322 234455 788877664 7999
Q ss_pred EECCC-CcEEEEecc-ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 903 WDQKR-QIRIETLQT-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 903 wd~~~-~~~~~~l~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
||+++ ++++..+.. .+.+.+......++|.++++|+.|++|++|++.
T Consensus 245 WDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 245 WDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred EECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 99985 556665521 222333344445568899999999999999973
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-23 Score=203.54 Aligned_cols=229 Identities=17% Similarity=0.202 Sum_probs=184.1
Q ss_pred ccccccccEEEEecCCCCeEEEecC---CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
.+-...-+.+++++.||++++||.. ..++.++.|...|.++.|++- .++++|.||+|++||..-+ ..++++.
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~ 144 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFN 144 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeec
Confidence 3444456688999999999999976 578889999999999999983 7888899999999999988 7999999
Q ss_pred ccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 708 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 708 ~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
||...|....|+| .++.++++|.||++++||++... +.+....|...+.+.. |+.-
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~Eil~cd-------w~ky--------------- 201 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNSEILCCD-------WSKY--------------- 201 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccceeEeec-------cccc---------------
Confidence 9999999999999 68999999999999999988642 2222333334444443 3222
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC-ceEEEEEECCCCEEEEEE
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~Dg~~I~iwd 865 (949)
.+..+++|+.|+.|+.||+++-+... ..+.+|.-.|..+.|+|. ...+++++.|= +++|||
T Consensus 202 ------------~~~vl~Tg~vd~~vr~wDir~~r~pl-----~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-T~riw~ 263 (311)
T KOG0277|consen 202 ------------NHNVLATGGVDNLVRGWDIRNLRTPL-----FELNGHGLAVRKVKFSPHHASLLASASYDM-TVRIWD 263 (311)
T ss_pred ------------CCcEEEecCCCceEEEEehhhccccc-----eeecCCceEEEEEecCcchhhHhhhccccc-eEEecc
Confidence 23459999999999999999866432 567899999999999985 55788899885 999999
Q ss_pred CCCC-eeEEeec-CCCcEEEEEEcC---CEEEEEECCCeEEEEEC
Q 002234 866 TSNY-NMVGSLP-TLSEVRAMVVSS---ELVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 866 ~~~~-~~~~~~~-~~~~v~~l~~s~---d~l~sgs~dg~I~vwd~ 905 (949)
...+ ..+.+.. |..-+..+.||+ ..+++.+.|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8744 4555666 556677788875 38999999999999985
No 87
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=220.21 Aligned_cols=309 Identities=16% Similarity=0.181 Sum_probs=236.7
Q ss_pred ccccccc--ccEEEEecCCCCeEEEecCC-----ceeeecCCCCceEEEEEeC-------------CEEEEEeCCCcEEE
Q 002234 633 YSPLAFE--MVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFR-------------DKIFSGHSDGTIKV 692 (949)
Q Consensus 633 ~~~~~~~--~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~~s~-------------d~lasgs~Dg~I~v 692 (949)
..++.|| ..++..-..|..+.|||++. ....+..|...|+.+.--| ..+++++.|||||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 3445565 45888888999999999984 3445567888898887654 26999999999999
Q ss_pred EecCCCceeee-----------E------------------------EecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 693 WTGRGSILHLI-----------Q------------------------QIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 693 Wd~~t~~~~~i-----------~------------------------~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
||++.+....+ . ..-+....+.+++++|+|++|++|..-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99986311111 0 001123468999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec-------------CCCCceEEEEeC----
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-------------SSKYPKCLALVQ---- 800 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~-------------~~~~v~~v~~~~---- 800 (949)
|+..-+ .......|...|.++.++... -..+.++.++.+.-|.++| |...|++++|..
T Consensus 487 ~Lq~l~-~~~~~eAHesEilcLeyS~p~----~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 487 DLQELE-YTCFMEAHESEILCLEYSFPV----LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred Eehhhh-hhhheecccceeEEEeecCch----hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 998754 333445678899999854321 1235677777888888776 567799999973
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec----
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---- 876 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---- 876 (949)
-++++++.|..|.+--.........+..+....+| ..++.+++.|...++++++.| +.|+|||+.+++..+.|+
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k-tTlYDm~Vdp~~k~v~t~cQD-rnirif~i~sgKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK-TTLYDMAVDPTSKLVVTVCQD-RNIRIFDIESGKQVKSFKGSRD 639 (1080)
T ss_pred eEEEeccCchhhheehhccccCceecccccccccc-ceEEEeeeCCCcceEEEEecc-cceEEEeccccceeeeeccccc
Confidence 35889999988764433322222222222222233 578999999999999999998 599999999999999998
Q ss_pred CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 877 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.+....+...|. |+++.+.|.++.++|+.+|+++... .||...|+.+.|++|-+.|++.+.||.|.||.+.
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 3466777777777 8999999999999999999999999 6999999999999999999999999999999874
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=200.96 Aligned_cols=290 Identities=17% Similarity=0.237 Sum_probs=221.4
Q ss_pred ccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEE
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 717 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~ 717 (949)
..++++.-.+++++. +..+.+.||.+.|+.++.... .+.+++.|.+.+||.++++ .|+.++.||.+.|+++.
T Consensus 124 tsrivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIK 197 (481)
T ss_pred cchheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEE
Confidence 456667767777542 345678899999999998763 8999999999999999999 89999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEC------CCC--------e--eEE-----------------------EEeecCCCceee
Q 002234 718 ILQSGEMLYSGSLDKTARVWSI------GNE--------E--IHC-----------------------VQVHDIKDQIQN 758 (949)
Q Consensus 718 fspdg~~L~Sgs~Dg~I~vWd~------~~~--------~--~~~-----------------------~~~~~~~~~v~~ 758 (949)
|++.+.+++++|.|++..||.. ... + ..+ .....|...|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 110 0 000 001112222222
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCC------------CceEEEEeC--CEEEEEECCCcEEEEECCCCceee
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~------------~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
. -|...|+.+++++||.+..+|+... ..+.+..++ ..+++++.|.+.++||.+..-...
T Consensus 278 ~-------dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV 350 (481)
T KOG0300|consen 278 C-------DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSV 350 (481)
T ss_pred h-------hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhccee
Confidence 2 2677899999999999999998432 223333333 347889999999999998432211
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC-eeEEeecCCCcEEEEEEcCC--EEEEEECCCeEE
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVE 901 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~ 901 (949)
..|.||...|+++.|..+... ++++.| ++|++||+++. .++.++...++++.++++.. .|+.--++..|+
T Consensus 351 -----~VFQGHtdtVTS~vF~~dd~v-VSgSDD-rTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 351 -----AVFQGHTDTVTSVVFNTDDRV-VSGSDD-RTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred -----eeecccccceeEEEEecCCce-eecCCC-ceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEE
Confidence 568899999999999877654 565554 79999999875 47788888999999999866 677778888999
Q ss_pred EEECCCCcE---EEEeccccccceeEEEEeCCC--CEEEEEeCCCcEEEEeCC
Q 002234 902 IWDQKRQIR---IETLQTGTSGKVQCMALDDNE--EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 902 vwd~~~~~~---~~~l~~~h~~~I~~l~~spdg--~~L~sgs~Dg~I~iWdl~ 949 (949)
+||++.... ..+-..+|...|+|++|..+. .-|++++.|..+.-|+++
T Consensus 424 lfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 424 LFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 999976542 223345899999999998654 468899999999999874
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=209.50 Aligned_cols=245 Identities=15% Similarity=0.280 Sum_probs=199.4
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC-CceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
..+++..|++.|+-+.||++ +|||++.|.+..+|++.. ...+...++.+|..+|.-+.||||.++|++++.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 45678899999999999997 999999999999998764 335678899999999999999999999999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 816 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd 816 (949)
||+.+|.........+...+ ..++|.|||.. +++|+.|++|..||
T Consensus 296 wDv~tgd~~~~y~~~~~~S~-------~sc~W~pDg~~----------------------------~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSV-------SSCAWCPDGFR----------------------------FVTGSPDRTIIMWD 340 (519)
T ss_pred ccCCcchhhhhcccCcCCCc-------ceeEEccCCce----------------------------eEecCCCCcEEEec
Confidence 99999964333333333333 44459999875 88899999999999
Q ss_pred CCCCceeeeecccccccCC-CCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEE
Q 002234 817 LATGTFATIQTGHRKLLGK-ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYL 893 (949)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~s 893 (949)
+...... .+.+. ...|.+++..+||.++.....|. .|++++..+......+..+.+|+++.+|.| ++.+
T Consensus 341 lDgn~~~-------~W~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 341 LDGNILG-------NWEGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred CCcchhh-------cccccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence 8755432 22222 25699999999999999998884 999999998877777778899999999998 6777
Q ss_pred EECCCeEEEEECCCCcEEEEecccccc--ceeEEEEeC-CCCEEEEEeCCCcEEEEeC
Q 002234 894 GCKGGTVEIWDQKRQIRIETLQTGTSG--KVQCMALDD-NEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~~~~~l~~~h~~--~I~~l~~sp-dg~~L~sgs~Dg~I~iWdl 948 (949)
.-.+..+++||++..+.+..+ .||.. .|-.-+|-- +..++++|++|+.|+||+-
T Consensus 413 nL~~qei~LWDl~e~~lv~kY-~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKY-FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EcccCeeEEeecchhhHHHHh-hcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 778999999999988888888 47765 333344643 4589999999999999984
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=3.1e-22 Score=196.26 Aligned_cols=238 Identities=22% Similarity=0.257 Sum_probs=194.5
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEE
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd 738 (949)
+...+|.+.|.+|+|+-+ .+++|+.|++++||+++..+...-....+|++.|-.++|+| ..+.+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 446789999999999986 99999999999999999875445556789999999999998 678999999999999999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~ 818 (949)
++.++ +......+..-.. +.|+|+|.+ ++++..|..|...|.+
T Consensus 94 ~r~~k--~~~~i~~~~eni~-------i~wsp~g~~----------------------------~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 94 IRSGK--CTARIETKGENIN-------ITWSPDGEY----------------------------IAVGNKDDRITFIDAR 136 (313)
T ss_pred eccCc--EEEEeeccCcceE-------EEEcCCCCE----------------------------EEEecCcccEEEEEec
Confidence 99985 2222222222222 338898886 7778888899999999
Q ss_pred CCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEE
Q 002234 819 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC 895 (949)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs 895 (949)
+.+....+. ....++.+.|+.++.+++.....| +|.|-....-+++.+++ |.....|+.|+|+ ++++|+
T Consensus 137 ~~~~~~~~~-------~~~e~ne~~w~~~nd~Fflt~GlG-~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 137 TYKIVNEEQ-------FKFEVNEISWNNSNDLFFLTNGLG-CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ccceeehhc-------ccceeeeeeecCCCCEEEEecCCc-eEEEEeccccccccccccCCcceEEEEECCCCceEeecc
Confidence 887764322 235678888875444444443344 99999999999999998 8899999999999 899999
Q ss_pred CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 896 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 896 ~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
.|-.+.+||++..-+++.+ ..+.-+|+.+.||.||++||+|++|..|-|
T Consensus 209 ADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ccceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccCccceEEe
Confidence 9999999999999999999 578889999999999999999999988854
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.9e-21 Score=182.31 Aligned_cols=281 Identities=16% Similarity=0.135 Sum_probs=214.1
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCC-----------------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcE
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE-----------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTI 690 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~-----------------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I 690 (949)
.++...|.+.|...+.|+..++.||..+.. .......|.+.|+|.+|+|. ++++|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 345667778899999999999999986531 11223468999999999996 99999999999
Q ss_pred EEEecCCCce---eeeEEecccCCCEEEEEEecC----CCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceeeeeec
Q 002234 691 KVWTGRGSIL---HLIQQIREHTKAVTGLAILQS----GEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 691 ~vWd~~t~~~---~~i~~l~~H~~~V~~v~fspd----g~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~ 762 (949)
++--.+.... -.-.++.-|.+.|..++|-.+ |..|++++. |..|++-|..+|+. ......|.+.|.
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghil----- 187 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHIL----- 187 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEE-----
Confidence 9986653311 134567789999999999654 457777664 77777778777641 111112233332
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccC-CCCCEEE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHA 841 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~ 841 (949)
+..+|+| -.+++|+.|.+|++||++-..++.+......-.+ ....|.+
T Consensus 188 -------------alyswn~------------------~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 188 -------------ALYSWNG------------------AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred -------------EEEEecC------------------cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 2333332 2489999999999999999888876553322111 2367999
Q ss_pred EEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC---c-EEEEe
Q 002234 842 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ---I-RIETL 914 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~---~-~~~~l 914 (949)
+++.|.+.+++++..|. ...+||++.+++++.+. |...|.++.|+|. ++.+++.|..|++-|+... + ++...
T Consensus 237 v~vdpsgrll~sg~~ds-sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADS-SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEECCCcceeeeccCCC-ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999999998885 99999999999999987 8899999999998 8999999999999998642 2 22333
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 915 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
..|.+.+..+.|+|..--+++.+.|.++.+|-++
T Consensus 316 -~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 -AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 5789999999999999899999999999999764
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.1e-22 Score=208.49 Aligned_cols=246 Identities=18% Similarity=0.325 Sum_probs=200.5
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCcee-ee--------------EEe-cccCCCEEEEEEecCC
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH-LI--------------QQI-REHTKAVTGLAILQSG 722 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~-~i--------------~~l-~~H~~~V~~v~fspdg 722 (949)
......|.-+|++++++|+ +.++++.||+|.-|++.++... .+ ..- ++|.+.|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4566789999999999997 9999999999999999887311 00 011 3788999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE
Q 002234 723 EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 802 (949)
Q Consensus 723 ~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~ 802 (949)
++|++|+.|..|.||+.++.+ .......|.+.|.++. |-.. .+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~-------fr~g----------------------------t~~ 258 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLA-------FRKG----------------------------TSE 258 (479)
T ss_pred cEEEecCCCceEEEecCcccc-hhhcccccccceeeee-------eecC----------------------------ccc
Confidence 999999999999999999974 1111234455555544 2211 235
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEE
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVR 882 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~ 882 (949)
+++++.|++|++|++.....+ ..+.+|...|..|....-...+..++.| +++++|++.....+....+.+.+.
T Consensus 259 lys~s~Drsvkvw~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrD-rT~rlwKi~eesqlifrg~~~sid 331 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRD-RTVRLWKIPEESQLIFRGGEGSID 331 (479)
T ss_pred eeeeecCCceEEEehhHhHHH------HHHhCCccceeeechhcccceEEecccc-ceeEEEeccccceeeeeCCCCCee
Confidence 999999999999999987776 7788999999999998888888778788 499999996655555555778999
Q ss_pred EEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccc-----------cceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 883 AMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-----------GKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 883 ~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~-----------~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|++|-.+ .+++|+.||.|.+|++.+.+++.+....|. .+|++++..|..+++++|+.+|.|++|.++
T Consensus 332 cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 9999666 999999999999999999999888765553 279999999999999999999999999863
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.3e-21 Score=195.70 Aligned_cols=259 Identities=16% Similarity=0.220 Sum_probs=196.3
Q ss_pred cccccc-cccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 633 YSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 633 ~~~~~~-~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
...|++ ....++.+|.|++||+|++.. .-.....|.++|.+++|+.| .+++|+.|+.+++||+.++ .+..
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~ 108 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQ 108 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---Ceee
Confidence 344444 344677999999999999874 22455679999999999987 9999999999999999998 5677
Q ss_pred ecccCCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 706 IREHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 706 l~~H~~~V~~v~fspdg~--~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
+..|.++|.++.|-+... .|+|||.|++|+.||++.. ..+......+.++++..-.........++.+++....+.
T Consensus 109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeecccceeEEEEecCCCcceeEecccccceeecccCCC--CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence 778999999999988654 8999999999999999986 455555667778877766666666666666666555433
Q ss_pred EEEec-----CCCCceEEEEeC--CEEEEEECCCcEEEEECCCC--ceeeeeccccccc---CCCCCEEEEEEeCCceEE
Q 002234 784 TKLLN-----SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG--TFATIQTGHRKLL---GKANPVHALQVHNGLVYT 851 (949)
Q Consensus 784 i~~~~-----~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~--~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l 851 (949)
...+. .+-.++|++... ...+.|+-.|.+.+..+..+ +....+..|+... +.-..|++|+|+|....+
T Consensus 187 ~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 187 PTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred cchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceE
Confidence 33222 123477888764 34799999999999988876 3333444444322 122468899999999999
Q ss_pred EEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECC
Q 002234 852 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKG 897 (949)
Q Consensus 852 ~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~d 897 (949)
++.+.|| ++.+||-.....+++.+ +..+|++..|+.+ +.++.+.|
T Consensus 267 vTaGsDG-tf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 267 VTAGSDG-TFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEecCCc-eEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 9999998 99999998888777766 8899999999987 34444433
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=9e-22 Score=205.28 Aligned_cols=237 Identities=19% Similarity=0.354 Sum_probs=203.9
Q ss_pred CCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 668 NGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 668 ~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
...+.++...| +.+.+|+.|.++.++|..++ +.+.+++||+..|+.+.|+|+...+++++.|..|+||...... .
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-E 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-C
Confidence 34567777777 59999999999999999999 8999999999999999999999999999999999999988764 3
Q ss_pred EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeee
Q 002234 746 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 746 ~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
......|..+|+.+. ..|.|.+ +++++.||+..+.|++++..+..
T Consensus 296 ~~~~~~h~~~V~~ls-------~h~tgeY----------------------------llsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLS-------LHPTGEY----------------------------LLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred ccccccccccceeee-------eccCCcE----------------------------EEEecCCceEEEEEccCCcEEEE
Confidence 444456778888877 6677764 88899999999999999998754
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
... ....-.+++.+|||||..++++..|| .++|||+.++..+..|+ |.++|..++|+.| +++++++|+.|++
T Consensus 341 vs~----~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 341 VSD----ETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred Eee----ccccceeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 321 12234689999999999999999997 99999999999999998 7899999999999 7999999999999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
||++..+...++.......|.++.|.+.|++|+.++.|=+|++++
T Consensus 416 wDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 999999888888655555799999999999999998887777664
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=6.2e-22 Score=208.88 Aligned_cols=247 Identities=19% Similarity=0.235 Sum_probs=189.5
Q ss_pred eecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc--------eeeeEEecccCCCEEEEEEecC-CCEEEEEeC
Q 002234 663 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--------LHLIQQIREHTKAVTGLAILQS-GEMLYSGSL 730 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~--------~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~ 730 (949)
....|.+.|..+.+.|. .+++++..+.|.|||..+.. ..+-..+.+|++.=.+++|++. .-.|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 34569999999999983 89999999999999987532 2333478899998888999994 558999999
Q ss_pred CCcEEEEECCCCee------EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 731 DKTARVWSIGNEEI------HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 731 Dg~I~vWd~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
|++|++||+..... .......|.+.|..++ |.+.. .+.+.
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~-------~h~~h---------------------------~~lF~ 244 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVA-------WHPLH---------------------------EDLFG 244 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhh-------ccccc---------------------------hhhhe
Confidence 99999999987531 1111223333333333 22221 23488
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCC-eeEEeec-CCCcE
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEV 881 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v 881 (949)
+.+.|+.+.|||++++.. .......+|.++|++++|+| ++..+|++|.|+ +|.+||+++. +++.++. |...|
T Consensus 245 sv~dd~~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~-tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADK-TVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred eecCCCeEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCC-cEEEeechhcccCceeccCCCcce
Confidence 899999999999997411 12256788999999999987 566778888886 9999999974 4566676 78999
Q ss_pred EEEEEcCC---EEEEEECCCeEEEEECCCC--------------cEEEEeccccccceeEEEEeCCCC-EEEEEeCCCcE
Q 002234 882 RAMVVSSE---LVYLGCKGGTVEIWDQKRQ--------------IRIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRI 943 (949)
Q Consensus 882 ~~l~~s~d---~l~sgs~dg~I~vwd~~~~--------------~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I 943 (949)
.++.|||+ .+++++.|+.+.|||+..- +++... .||...|..+.|+|+.. .|++.++|+.+
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceE
Confidence 99999998 7999999999999998642 123344 79999999999999886 56788999999
Q ss_pred EEEeCC
Q 002234 944 QAWGLS 949 (949)
Q Consensus 944 ~iWdl~ 949 (949)
+||+.+
T Consensus 399 qIW~~s 404 (422)
T KOG0264|consen 399 QIWQMA 404 (422)
T ss_pred EEeecc
Confidence 999863
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.4e-21 Score=192.06 Aligned_cols=288 Identities=16% Similarity=0.223 Sum_probs=207.9
Q ss_pred HHHHHhhHhhhccccccccccEEEEecCCCCeEEEecCC-------ceeeecCCCCceEEEEEeCC---EEEEEeCCCcE
Q 002234 621 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTI 690 (949)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I 690 (949)
-.++++|..-+....|+.||.+|++.+.|++|++|+.+. +++... .-+..+.+.|+|| .+++.-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 356788888888899999999999999999999999873 111111 1235688999998 77777777899
Q ss_pred EEEecCCCc---e--ee-----eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeee
Q 002234 691 KVWTGRGSI---L--HL-----IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 760 (949)
Q Consensus 691 ~vWd~~t~~---~--~~-----i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~ 760 (949)
++|.....+ . .. ...-+.|.-.|..+-...++.+|.|++.|.+|.+|+++...+..+....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq--------- 228 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ--------- 228 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccc---------
Confidence 999765321 0 00 1111346667777777778999999999999999999953233322221
Q ss_pred eccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 761 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 761 ~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
..+...+.+|+|+.+++......+++|.. +-..||+++ .. .....+.||...|.
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~---------------~f~kdG~fq----------ev-~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEP---------------IFTKDGTFQ----------EV-KRVFSLKGHQSAVL 282 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEE---------------EeccCcchh----------hh-hhhheeccchhhee
Confidence 22334458999998776666655555531 112333321 10 11146789999999
Q ss_pred EEEEeCCceEEEEEECCCCEEEEEECCC-------CeeEEeec-----CCCcEEEEEEcCC-EEEEEECCCeEEEEECCC
Q 002234 841 ALQVHNGLVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg~~I~iwd~~~-------~~~~~~~~-----~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~ 907 (949)
.++|+++...+++.|.|| ++++||+.- .+.++... .++....+..+|+ -+++.+...++++|..++
T Consensus 283 ~~aFsn~S~r~vtvSkDG-~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDG-KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred eeeeCCCcceeEEEecCC-cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 999999999999999998 999999852 22233321 2344558999998 566667777899999999
Q ss_pred CcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 908 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 908 ~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
|+...++...|...|.+++|++||++++|++ |..+++.
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 9999999888999999999999999999998 5566664
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=7.1e-22 Score=197.47 Aligned_cols=246 Identities=17% Similarity=0.301 Sum_probs=197.0
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC------------C----ceeeeEEecccCCCEEEEEEecCCC
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG------------S----ILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t------------~----~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
..+..|++++.+.+|++| ++++|+.|..|+|.|++. + ....++++..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 356789999999999998 999999999999999871 1 1257889999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE
Q 002234 724 MLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 802 (949)
Q Consensus 724 ~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~ 802 (949)
.|+||+.|++|+++|+.... .+.+..+....+|.++. |.|.|.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiS-------fHPsGef---------------------------- 230 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSIS-------FHPSGEF---------------------------- 230 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEe-------ecCCCce----------------------------
Confidence 99999999999999997653 23344445566777777 7887775
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--C-CC
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-LS 879 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~-~~ 879 (949)
+++|....++++||+.+-++..... .-.+|.+.|+++.+++.+...+++|.|| .|++||--+++++.++. | +.
T Consensus 231 llvgTdHp~~rlYdv~T~Qcfvsan---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQCFVSAN---PDDQHTGAITQVRYSSTGSLYVTASKDG-AIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred EEEecCCCceeEEeccceeEeeecC---cccccccceeEEEecCCccEEEEeccCC-cEEeeccccHHHHHHHHhhcCCc
Confidence 7788888999999999988865433 3457999999999999999999999998 99999999999999997 3 57
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccc--c---ceeEEEEeCCCCEEEEEeC-CCcEEEEe
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS--G---KVQCMALDDNEEFLVIGTS-DGRIQAWG 947 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~--~---~I~~l~~spdg~~L~sgs~-Dg~I~iWd 947 (949)
.|.+..|..| ++++.+.|..+++|.+.++.++..+. |.. + .-+...|+....|++.-.+ .+.+.-||
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt-GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT-GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe-cCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 7999999887 89999999999999999999998884 321 1 1233345555555543322 34455555
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.3e-21 Score=204.19 Aligned_cols=271 Identities=18% Similarity=0.285 Sum_probs=210.1
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCCce-------------------eee-cCCCCceEEEEEeCC--EEEE
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV-------------------HVD-SSENGKVLSIACFRD--KIFS 683 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~-------------------~~~-~~h~~~V~~l~~s~d--~las 683 (949)
.|+...-...++++..+.++++.|++|.-|+..+.. ... .+|...|.+++.|+| +|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 344455567788899999999999999999865211 111 278899999999997 9999
Q ss_pred EeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeecc
Q 002234 684 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 684 gs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~ 763 (949)
|+.|..|.|||..+. +.++.+.+|.+.|.+++|-.....|+++|.|++|++|+++... ..-..+.|.+.|.++.
T Consensus 220 gg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~Id--- 293 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGID--- 293 (479)
T ss_pred cCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeec---
Confidence 999999999999999 8899999999999999999888899999999999999998753 2223344555555554
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE-EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
... -.+ +-+|+.|+++++|++..... ..+.+|.+.+.++
T Consensus 294 ----aL~-----------------------------reR~vtVGgrDrT~rlwKi~eesq-------lifrg~~~sidcv 333 (479)
T KOG0299|consen 294 ----ALS-----------------------------RERCVTVGGRDRTVRLWKIPEESQ-------LIFRGGEGSIDCV 333 (479)
T ss_pred ----hhc-----------------------------ccceEEeccccceeEEEeccccce-------eeeeCCCCCeeeE
Confidence 111 123 34566999999999965544 3566778899999
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--C-----------CCcEEEEEEcCC--EEEEEECCCeEEEEECCC
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-----------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~-----------~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~ 907 (949)
+|-++.. +++||.+| .|.+|++.+.+++.+.. | ..+|++++..|. .+++|+.+|.|++|-+..
T Consensus 334 ~~In~~H-fvsGSdnG-~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 334 AFINDEH-FVSGSDNG-SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEecccc-eeeccCCc-eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 9986654 46777776 99999999988887665 3 127889998875 999999999999999988
Q ss_pred C----cEEEEeccccccceeEEEEeCCCCEEEEE-eCCCcEEEE
Q 002234 908 Q----IRIETLQTGTSGKVQCMALDDNEEFLVIG-TSDGRIQAW 946 (949)
Q Consensus 908 ~----~~~~~l~~~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iW 946 (949)
+ .++..+. -.+.|++++|+++|+++++| +....+--|
T Consensus 412 g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 412 GLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred Cccccceeeecc--cccEEEEEEEccCCCEEEEeccccccccee
Confidence 7 4555553 56799999999999977666 444444334
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=1.5e-22 Score=210.18 Aligned_cols=245 Identities=17% Similarity=0.321 Sum_probs=198.5
Q ss_pred CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
.....+..|.+.|..+.|-++ .|++|+.|..|++|++..++...+.++.|..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 345567789999999999986 999999999999999998866688899999999999999999999999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 816 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd 816 (949)
|++....... ....|.+.|.++. |... ...+++|+.|.+|+.||
T Consensus 246 Wnvd~~r~~~-TLsGHtdkVt~ak-------~~~~----------------------------~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 246 WNVDSLRLRH-TLSGHTDKVTAAK-------FKLS----------------------------HSRVVSGSADRTIKLWD 289 (459)
T ss_pred eeccchhhhh-hhcccccceeeeh-------hhcc----------------------------ccceeeccccchhhhhh
Confidence 9999875211 1122566666655 2111 12388999999999999
Q ss_pred CCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEE
Q 002234 817 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG 894 (949)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sg 894 (949)
+.+..+....- . ...++.|... ...++++..|+ .|++||.++..+....+.++.|+++..+++ .+.+.
T Consensus 290 l~k~~C~kt~l-----~--~S~cnDI~~~--~~~~~SgH~Dk-kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 290 LQKAYCSKTVL-----P--GSQCNDIVCS--ISDVISGHFDK-KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS 359 (459)
T ss_pred hhhhheecccc-----c--cccccceEec--ceeeeeccccc-ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee
Confidence 99988764321 1 2345566655 45567777775 899999999999999998889999999988 68888
Q ss_pred ECCCeEEEEECCCCcEEEEeccc---cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 895 CKGGTVEIWDQKRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 895 s~dg~I~vwd~~~~~~~~~l~~~---h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.|.++.+.|.++.+..+.+... .....+.+.||||+.|+++||.||.|+||++.
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 99999999999999888877321 11248899999999999999999999999973
No 100
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=3.3e-20 Score=207.75 Aligned_cols=297 Identities=17% Similarity=0.246 Sum_probs=233.1
Q ss_pred cccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEec-ccCCC
Q 002234 639 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKA 712 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~ 712 (949)
--..++.|-.+|+|.+++++ +.+..+....++|++++|..| .+++|+..|.+-+||++.. +.+..+. .|.+.
T Consensus 213 aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~s 290 (910)
T KOG1539|consen 213 ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGS 290 (910)
T ss_pred cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCC
Confidence 34578999999999999998 334444333599999999965 9999999999999999988 5555554 89999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEEEe-ecCCCc----------------------------------
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQV-HDIKDQ---------------------------------- 755 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~-~~~~~~---------------------------------- 755 (949)
|....|.|....++|++.|..+++|-.+++. ++.+.. ..|..|
T Consensus 291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~ 370 (910)
T KOG1539|consen 291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS 370 (910)
T ss_pred cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence 9999999999999999999999998555221 111100 001111
Q ss_pred ---------------------------eeeeeec----------------------------------------------
Q 002234 756 ---------------------------IQNLAVS---------------------------------------------- 762 (949)
Q Consensus 756 ---------------------------v~~l~~~---------------------------------------------- 762 (949)
|..+++.
T Consensus 371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~ 450 (910)
T KOG1539|consen 371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN 450 (910)
T ss_pred HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcc
Confidence 1111100
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecC---------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeee
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~---------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
...++.++.|+..++|...|.+..++. .+.|..++.++ ..+++++.+|.+++||..+...+..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 014667888999999999999988874 45677777775 3489999999999999998876532
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
.. -..++..+..+.....++.+..| -.|+++|+.+.+.++.|. |...|+.++|||| ++++++.|++|++
T Consensus 531 l~-------l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 531 LR-------LGSSITGIVYHRVSDLLAIALDD-FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred ec-------cCCCcceeeeeehhhhhhhhcCc-eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 22 23578888888777777776655 599999999999999998 8899999999999 8999999999999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC-CcEEEEe
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-GRIQAWG 947 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D-g~I~iWd 947 (949)
||+.++.++-.+. -..+.+++.|||+|.+|||...| .-|++|.
T Consensus 603 wDlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 603 WDLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999884 56689999999999999999988 6799994
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=6.8e-21 Score=209.23 Aligned_cols=316 Identities=15% Similarity=0.267 Sum_probs=240.1
Q ss_pred HhhHhhhccccccc---cccEEEEecCCCCeEEEecC--C---------------------ce----------eeecCCC
Q 002234 625 KGLRELRKYSPLAF---EMVKVLSNGHDSSADFWNHR--E---------------------LV----------HVDSSEN 668 (949)
Q Consensus 625 ~~~~~~~~~~~~~~---~~~~l~s~s~dg~I~vWd~~--~---------------------~~----------~~~~~h~ 668 (949)
++|...++...+.- +..+++++|.|..||+|.+. . .. .++.||+
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 34444444333332 45589999999999999753 0 00 2345999
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCC--ceeeeE---EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--ILHLIQ---QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 741 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~--~~~~i~---~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~ 741 (949)
+.|+++.|+|. .|.|++.|.++.+|...+. -+.... ...|.....+..-|+|+++.+++-+.-|-.++|....
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 99999999997 8999999999999977644 333333 3334456789999999999999999999999999444
Q ss_pred Ce--eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC----------------CCCceEEEEeC-C-
Q 002234 742 EE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS----------------SKYPKCLALVQ-G- 801 (949)
Q Consensus 742 ~~--~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~----------------~~~v~~v~~~~-~- 801 (949)
.. ........|-+.|.++. |.|.|.++.+.+.|.+.++|.. +...+|+++-+ +
T Consensus 348 ~~~w~~~~~iSGH~~~V~dv~-------W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVDGVKDVD-------WDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred ccceeeccccccccccceeee-------ecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 32 12222335677888888 9999999999999999888753 33467888876 3
Q ss_pred EEEEEECCCcEEEEECCC-------------------------------------------Cce----ee----------
Q 002234 802 KVYCGCQDGAIQEIDLAT-------------------------------------------GTF----AT---------- 824 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~-------------------------------------------~~~----~~---------- 824 (949)
.+++|.....+++|+... |.. ..
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 477777778888887621 000 00
Q ss_pred -------------eecccccccCCCCCEEEEEEeCCceEEEEEECCC----CEEEEEECCCCeeEEeec-CCCcEEEEEE
Q 002234 825 -------------IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGSLP-TLSEVRAMVV 886 (949)
Q Consensus 825 -------------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 886 (949)
.++...++.||...|++++.+|++.++++++... ..|++|+..+...++.+. |.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 0001125678999999999999999999986432 379999999999888887 7889999999
Q ss_pred cCC--EEEEEECCCeEEEEECCCCc----EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 887 SSE--LVYLGCKGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 887 s~d--~l~sgs~dg~I~vwd~~~~~----~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
||| ++++.|.|.++.+|...... ..... ..|+.-|++..|+||+++++|+|.|.+|+||..
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999 89999999999999975432 12223 479999999999999999999999999999975
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-22 Score=220.52 Aligned_cols=233 Identities=20% Similarity=0.279 Sum_probs=185.6
Q ss_pred eEEEEEeC---CEEEEEeCCCcEEEEecCC-CceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 671 VLSIACFR---DKIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 671 V~~l~~s~---d~lasgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
+..|.|+. ++||+++..|.|.+||+.. .+.+.+..|.+|+..|++++|++ ...+|+|||.||+|++||++..+ .
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-S 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-c
Confidence 44566664 4999999999999999986 12267788999999999999999 57899999999999999999864 1
Q ss_pred EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeee
Q 002234 746 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 746 ~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
........+.|.++. |+|.. +++++++...|.+++||++......
T Consensus 169 ~~t~~~nSESiRDV~-------fsp~~---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~- 213 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVK-------FSPGY---------------------------GNKFASIHDSGYLQLWDLRQPDRCE- 213 (839)
T ss_pred cccccccchhhhcee-------eccCC---------------------------CceEEEecCCceEEEeeccCchhHH-
Confidence 222222344555555 44432 2368999999999999999765432
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEeecCCCcEEEEEEcCC---EEEEEE--CCC
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE---LVYLGC--KGG 898 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~~~~~~v~~l~~s~d---~l~sgs--~dg 898 (949)
.++..|.++|.++.|+|++.++|+||.|+ .|+|||..+++ ...++....++.++.|-|+ .|++++ .|-
T Consensus 214 ----~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dt 288 (839)
T KOG0269|consen 214 ----KKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDT 288 (839)
T ss_pred ----HHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccc
Confidence 67889999999999999999999999995 99999998654 4556667899999999998 577765 577
Q ss_pred eEEEEECCCCcEEEEeccccccceeEEEEeC-CCCEEEEEeCCCcEE
Q 002234 899 TVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQ 944 (949)
Q Consensus 899 ~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~ 944 (949)
.|+|||++...........|.+.++.++|.. |...+.+++.||+|.
T Consensus 289 sV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 289 SVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 8999999887654443368999999999954 557889999999874
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=5.6e-22 Score=192.89 Aligned_cols=243 Identities=20% Similarity=0.270 Sum_probs=211.5
Q ss_pred ceeeecCCCCceEEEEEeC---C--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcE
Q 002234 660 LVHVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 734 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~---d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I 734 (949)
...+..+|+.+|..++||| + +|+|++.||.-.+-+-++| .-+.+|.+|.+.|++...+.+...-++++.|-+-
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 3456779999999999997 3 8999999999999999999 7899999999999999999999899999999999
Q ss_pred EEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 735 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
++||.-+| ..+..++|+.-|..++ |+.|.. +|++|+.+..+++
T Consensus 84 kvw~a~tg--delhsf~hkhivk~~a-------f~~ds~----------------------------~lltgg~ekllrv 126 (334)
T KOG0278|consen 84 KVWDAVTG--DELHSFEHKHIVKAVA-------FSQDSN----------------------------YLLTGGQEKLLRV 126 (334)
T ss_pred hhhhhhhh--hhhhhhhhhheeeeEE-------ecccch----------------------------hhhccchHHHhhh
Confidence 99999988 4455566676777666 666665 3899999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC-EEEE
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYL 893 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-~l~s 893 (949)
||++..+... ..+.+|.+.|..+.|......+++.+.| ++||+||.+++..++++....+|+++.++++ .+++
T Consensus 127 fdln~p~App-----~E~~ghtg~Ir~v~wc~eD~~iLSSadd-~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 127 FDLNRPKAPP-----KEISGHTGGIRTVLWCHEDKCILSSADD-KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred hhccCCCCCc-----hhhcCCCCcceeEEEeccCceEEeeccC-CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE
Confidence 9998776542 6788999999999998777777777655 5999999999999999999999999999999 6777
Q ss_pred EECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 894 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
-...+.|.+||..+..+++.++ -...|.+...+|+..++++|++|+.++.||..
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred EecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEecc
Confidence 7888899999999999998885 33469999999999999999999999999863
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=213.93 Aligned_cols=231 Identities=23% Similarity=0.373 Sum_probs=190.0
Q ss_pred EEEEEeCCCcEEEEecCCCce----eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCc
Q 002234 680 KIFSGHSDGTIKVWTGRGSIL----HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 755 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~----~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 755 (949)
+|+|||.||+|++|++..... ..+..++.|+++|+.+....+|+.|+|+|.|-+|++|+...+...+...
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st------ 112 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST------ 112 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh------
Confidence 799999999999999875422 2577889999999999999999999999999999999988753111111
Q ss_pred eeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEE-e--CCEEEEEECCCcEEEEECCCCce--eeeecc--
Q 002234 756 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL-V--QGKVYCGCQDGAIQEIDLATGTF--ATIQTG-- 828 (949)
Q Consensus 756 v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~-~--~~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~-- 828 (949)
+-+|..+|.|+++ . ...+++|+-|+.|.+||+.++.. +..+..
T Consensus 113 ------------------------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 113 ------------------------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred ------------------------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 1134455555555 2 23589999999999999998833 211110
Q ss_pred ccccc-CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEE
Q 002234 829 HRKLL-GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 904 (949)
Q Consensus 829 ~~~~~-~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd 904 (949)
...+. |+..+|++++.++.+..+++|+.++ .+++||.++.+.+..+. |...|..+..++| .++++|.||+|++||
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCccc-ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 01233 8889999999999999999999885 99999999999888888 8899999999998 799999999999999
Q ss_pred CCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 905 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 905 ~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+...+++.++. .|...|+++..+|+-.++++|+.||.|..=|+
T Consensus 242 LgqQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 242 LGQQRCLATYI-VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred ccccceeeeEE-eccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 99999999994 88889999999999999999999999987554
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.2e-20 Score=187.55 Aligned_cols=268 Identities=18% Similarity=0.251 Sum_probs=207.2
Q ss_pred cccEEEEecCCCCeEEEecCC-----------------ceeeecCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCCC
Q 002234 639 EMVKVLSNGHDSSADFWNHRE-----------------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~-----------------~~~~~~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~ 698 (949)
.|.++++|+.||.|-|||+++ ......+|.-.|..+.|.| | ++.+++.|.+++|||.+|-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 588999999999999999872 1123446888999999999 3 9999999999999999998
Q ss_pred ceeeeEEecccCCCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspd---g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
+....|+ ..+.|.+-+++|- ..++++|..|-.|++-|+..|. ..-....|.+.|.++. |+|...++
T Consensus 135 --Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~-------Wsp~~e~v 203 (397)
T KOG4283|consen 135 --QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVE-------WSPSSEWV 203 (397)
T ss_pred --eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEE-------eccCceeE
Confidence 5666664 6778999999983 4578888889999999999995 2233345678888887 77777764
Q ss_pred EEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC-ceeeeeccc--------ccccCCCCCEEEEEEeC
Q 002234 776 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGH--------RKLLGKANPVHALQVHN 846 (949)
Q Consensus 776 ~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~--------~~~~~h~~~V~~l~~~~ 846 (949)
|++|+.||.|++||++.- .+...+..+ +.-..|.+.|+.++|..
T Consensus 204 ---------------------------LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 204 ---------------------------LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred ---------------------------EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 899999999999999864 333332221 12457889999999999
Q ss_pred CceEEEEEECCCCEEEEEECCCCeeEE-ee---cCC----CcEEEEE-EcCCEEEEEECCCeEEEEECCCCcEEEEeccc
Q 002234 847 GLVYTASTSLDGAAVKMWSTSNYNMVG-SL---PTL----SEVRAMV-VSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 917 (949)
Q Consensus 847 ~~~~l~s~s~Dg~~I~iwd~~~~~~~~-~~---~~~----~~v~~l~-~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 917 (949)
++.++++.+.|+ .+++|+..+|+... .+ .++ -.+. +. ...+.++.--.++.+.++++-.+..+..+. .
T Consensus 257 d~~~l~~~gtd~-r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-~ 333 (397)
T KOG4283|consen 257 DARYLASCGTDD-RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-T 333 (397)
T ss_pred cchhhhhccCcc-ceEEeecccCcccccccccccccccccceEE-EeecccceEEEEecCCeEEEEEccCceEEEeee-c
Confidence 999999999997 99999998775321 11 111 1122 21 122233334456899999999999999994 7
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 918 TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 918 h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
|...|.+.++.|+-+...+|..|+.|..|-
T Consensus 334 h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 334 HLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred ccceeeEEeecCchhhhhccccCCcccccc
Confidence 888999999999999999999999999995
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=7.6e-21 Score=209.05 Aligned_cols=237 Identities=19% Similarity=0.320 Sum_probs=198.1
Q ss_pred ceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEE-EEEec-CCCEEEEEeCCCcEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG-LAILQ-SGEMLYSGSLDKTARV 736 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~-v~fsp-dg~~L~Sgs~Dg~I~v 736 (949)
..+.+.+|+..|..+++.++ .++++|.||++++|+-..+++.....+.+|.+.|.. +++-+ ++-.+++|+.|++|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 45678899999999999887 799999999999999988866666778889998888 88886 5556999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe-CCEEEEEECCCcEEEE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEI 815 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~-~~~l~sgs~Dg~I~iw 815 (949)
|...+.. .......|+..|.+ ++.. .+.+++||.|.++++|
T Consensus 86 ~~~~~~~-P~~~LkgH~snVC~-------------------------------------ls~~~~~~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 86 FKLSQAE-PLYTLKGHKSNVCS-------------------------------------LSIGEDGTLISGSWDSTAKVW 127 (745)
T ss_pred EecCCCC-chhhhhccccceee-------------------------------------eecCCcCceEecccccceEEe
Confidence 9998864 22222334444444 4422 3458999999999999
Q ss_pred ECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEE
Q 002234 816 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYL 893 (949)
Q Consensus 816 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~s 893 (949)
-+. ++. ..+.+|...|.++..-|+. .++++|.| ++|++|.- ++.+++|. |.+-|+.+++-++ .+++
T Consensus 128 ~~~--~l~------~~l~gH~asVWAv~~l~e~-~~vTgsaD-KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS 195 (745)
T KOG0301|consen 128 RIG--ELV------YSLQGHTASVWAVASLPEN-TYVTGSAD-KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS 195 (745)
T ss_pred cch--hhh------cccCCcchheeeeeecCCC-cEEeccCc-ceeeeccC--CchhhhhccchhheeeeEEecCCCeEe
Confidence 764 333 4578999999999999988 66788888 59999975 77888888 7889999999988 9999
Q ss_pred EECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 894 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++.||.|+.|++ +|+.+..+ .+|.+.|.+++..+++..++++++|++++||+.
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ecCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 999999999999 78888888 499999999998888899999999999999985
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8.3e-20 Score=183.24 Aligned_cols=255 Identities=17% Similarity=0.250 Sum_probs=186.6
Q ss_pred eecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecC--CCceeeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcEEE
Q 002234 663 VDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGR--GSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 736 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~--t~~~~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~v 736 (949)
...+|.+-|.++.|.. +.+|+++.|++|+|||.+ ++.+.+....+.|.+.|+.|.|.+ -|+.+|++|.|++++|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 4467899999999986 499999999999999954 456788899999999999999976 5999999999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC----EEEEEECCCcE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG----KVYCGCQDGAI 812 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~----~l~sgs~Dg~I 812 (949)
|.-...... ..|+ .|.....+.|....|..+.|.|. ++++++.||.+
T Consensus 88 WEE~~~~~~------------------------~~~~-----~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 88 WEEQEKSEE------------------------AHGR-----RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred eeecccccc------------------------cccc-----eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence 975321100 0000 01111223344445555555542 48999999999
Q ss_pred EEEECCCCceeeeeccccc-------ccCCCCCEEEEEEeCC---ceEEEEEECCC----CEEEEEECCCC----eeEEe
Q 002234 813 QEIDLATGTFATIQTGHRK-------LLGKANPVHALQVHNG---LVYTASTSLDG----AAVKMWSTSNY----NMVGS 874 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~~~~~-------~~~h~~~V~~l~~~~~---~~~l~s~s~Dg----~~I~iwd~~~~----~~~~~ 874 (949)
+||+.-............. ...+..+..|+.|++. ..+++.++.++ +.++||....+ ..+.+
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 9998765443322221122 2246678889999863 56777777552 37888876543 23444
Q ss_pred ec-CCCcEEEEEEcCC------EEEEEECCCeEEEEECCCC--------------------cEEEEeccccccceeEEEE
Q 002234 875 LP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ--------------------IRIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 875 ~~-~~~~v~~l~~s~d------~l~sgs~dg~I~vwd~~~~--------------------~~~~~l~~~h~~~I~~l~~ 927 (949)
+. +..+|+.++|.|+ .+++++.|| |+||++... +.+..+ .+|.+.|+.+.|
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~w 296 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRW 296 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEE
Confidence 55 7899999999998 599999999 999998731 133445 589999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl 948 (949)
+-.|..|++.|.||.|++|.-
T Consensus 297 NmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeeeEEeecCCCceeeehhh
Confidence 999999999999999999964
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-19 Score=182.46 Aligned_cols=240 Identities=15% Similarity=0.224 Sum_probs=194.2
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC--CCcEEEE
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVW 737 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~--Dg~I~vW 737 (949)
+.+..-.+.|.++.|+++ .+++++.|.++++||..++ +++.++..+.-.|..+.|....+.++.++. |.+||.-
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 344556789999999986 8888999999999999999 889999888889999999887777777777 8999999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
++.+++ .......|...|.++. .+|-+. .+++++.|++|++||+
T Consensus 86 sl~dNk-ylRYF~GH~~~V~sL~-------~sP~~d----------------------------~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 86 SLHDNK-YLRYFPGHKKRVNSLS-------VSPKDD----------------------------TFLSSSLDKTVRLWDL 129 (311)
T ss_pred EeecCc-eEEEcCCCCceEEEEE-------ecCCCC----------------------------eEEecccCCeEEeeEe
Confidence 999974 3333446677777776 555443 4899999999999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC--eeEEeec----CCCcEEEEEEcCC--
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY--NMVGSLP----TLSEVRAMVVSSE-- 889 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~--~~~~~~~----~~~~v~~l~~s~d-- 889 (949)
+..++..... ...-...+|+|+|.++|.+...+ .|++||++.. .+..++. .....+.+.||||
T Consensus 130 R~~~cqg~l~--------~~~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 130 RVKKCQGLLN--------LSGRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK 200 (311)
T ss_pred cCCCCceEEe--------cCCCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC
Confidence 9877763322 12334678999999999998775 9999999864 3444444 3577899999999
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEeccccccc---eeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 890 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK---VQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 890 ~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~---I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+++.++..+.+++.|.-+|..+.++. ++... -.+..|+|||+++++|+.||+|.+|++.
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 79999999999999999999998884 54432 2567799999999999999999999973
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=4.2e-19 Score=194.71 Aligned_cols=258 Identities=13% Similarity=0.132 Sum_probs=184.2
Q ss_pred cEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EE-EEEeCCCcEEEEecCCCceeeeEEecccCCCEEE
Q 002234 641 VKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 715 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~l-asgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~ 715 (949)
..+++++.|+.|++||..+ ....+..|. .+.+++|+|+ .+ ++++.++.|++||..++ +.+..+..+.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccE
Confidence 4678999999999999863 445555444 4678999997 44 67788999999999998 56666655544 567
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCce
Q 002234 716 LAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 794 (949)
Q Consensus 716 v~fspdg~~L~Sg-s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~ 794 (949)
++|+|+++.++++ +.|+.+++||+.+++ .+........+.++. |+|+|+.
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~-------~~~dg~~-------------------- 128 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIPVGVEPEGMA-------VSPDGKI-------------------- 128 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEeeCCCCcceEE-------ECCCCCE--------------------
Confidence 8999999877654 568999999998864 222222222333443 8888875
Q ss_pred EEEEeCCEEEEEECCC-cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE-CCCCEEEEEECCCCeeE
Q 002234 795 CLALVQGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 795 ~v~~~~~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~Dg~~I~iwd~~~~~~~ 872 (949)
+++++.++ .+.+||..++....... ....+..+.|++++.+++.++ .++ .|++||+.+++.+
T Consensus 129 --------l~~~~~~~~~~~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~-~v~i~d~~~~~~~ 192 (300)
T TIGR03866 129 --------VVNTSETTNMAHFIDTKTYEIVDNVL-------VDQRPRFAEFTADGKELWVSSEIGG-TVSVIDVATRKVI 192 (300)
T ss_pred --------EEEEecCCCeEEEEeCCCCeEEEEEE-------cCCCccEEEECCCCCEEEEEcCCCC-EEEEEEcCcceee
Confidence 44444443 46778988776643211 123456789999998775554 454 9999999999877
Q ss_pred EeecCC--------CcEEEEEEcCC--EEE-EEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE-eCC
Q 002234 873 GSLPTL--------SEVRAMVVSSE--LVY-LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG-TSD 940 (949)
Q Consensus 873 ~~~~~~--------~~v~~l~~s~d--~l~-sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg-s~D 940 (949)
..+... .....++|+|+ +++ +.+.++.+.+||..+++....+. +...+.+++|+|+|++|+++ +.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCC
Confidence 765411 12356888988 433 34557789999999998877664 34479999999999999886 469
Q ss_pred CcEEEEeCC
Q 002234 941 GRIQAWGLS 949 (949)
Q Consensus 941 g~I~iWdl~ 949 (949)
|.|++||+.
T Consensus 271 ~~i~v~d~~ 279 (300)
T TIGR03866 271 NDVSVIDVA 279 (300)
T ss_pred CeEEEEECC
Confidence 999999974
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=197.94 Aligned_cols=230 Identities=20% Similarity=0.337 Sum_probs=187.9
Q ss_pred ccEEEEecCC-CCeEEEecCCceee--ecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEE
Q 002234 640 MVKVLSNGHD-SSADFWNHRELVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 714 (949)
Q Consensus 640 ~~~l~s~s~d-g~I~vWd~~~~~~~--~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 714 (949)
+.+++++... ..+.+|.+....+. ..--.++|.+++-+|+ +++.|+..|.|++|.+.+| ..+..+.+|-..|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSIT 127 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhcccee
Confidence 3456665543 57889998743322 3345788999999996 6777779999999999999 88899999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCce
Q 002234 715 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 794 (949)
Q Consensus 715 ~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~ 794 (949)
|+.|+-||.+|+|||.||.|.+|++.+
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~----------------------------------------------------- 154 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTD----------------------------------------------------- 154 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEe-----------------------------------------------------
Confidence 999999999999999999999999754
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC--ceEEEEEECCCCEEEEEECCCCeeE
Q 002234 795 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 795 ~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~Dg~~I~iwd~~~~~~~ 872 (949)
++.+..|+ +.+.. ..+..|.-+|+++...++ ..++.+.|.| +++++||+..+..+
T Consensus 155 --------lv~a~~~~--------~~~p~------~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 155 --------LVSADNDH--------SVKPL------HIFSDHTLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLL 211 (476)
T ss_pred --------ecccccCC--------Cccce------eeeccCcceeEEEEecCCCccceEEEecCC-ceEEEEEeccceee
Confidence 22233333 12222 567788899999998755 4578888888 59999999999999
Q ss_pred EeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC----------------cEEEEecccccc--ceeEEEEeCCCC
Q 002234 873 GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ----------------IRIETLQTGTSG--KVQCMALDDNEE 932 (949)
Q Consensus 873 ~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~----------------~~~~~l~~~h~~--~I~~l~~spdg~ 932 (949)
.++.....+.+++.+|- .+++|+.+|.|.+.++... ..+..+ .||.+ .|+|++++-||.
T Consensus 212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCcc
Confidence 99999999999999987 8999999999999887542 234455 47888 999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 002234 933 FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 933 ~L~sgs~Dg~I~iWdl 948 (949)
.|++|+.||+|+|||+
T Consensus 291 lLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDI 306 (476)
T ss_pred EEEeeCCCCCEEEEec
Confidence 9999999999999997
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=205.70 Aligned_cols=297 Identities=13% Similarity=0.147 Sum_probs=203.6
Q ss_pred cccEEEEecCCCCeEEEecCCc--------eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 639 EMVKVLSNGHDSSADFWNHREL--------VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~--------~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
.-..|+.+..||.|.++|.... ......|.+.|..+.|-|. .|++++.|.++++||+++++..-...+.|
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 3447889999999999998732 2345679999999999995 99999999999999999994333334899
Q ss_pred cCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 709 HTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 709 H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
|++.|.+++|.| |...|++|+.||.|.|||++-.....+..+ ...++...-... .--.|-. ..++-|
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~--~~~~~~~~n~~p-tpskp~~---------kr~~k~ 210 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF--DNRIYGRHNTAP-TPSKPLK---------KRIRKW 210 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH--hhhhhccccCCC-CCCchhh---------cccccc
Confidence 999999999999 567899999999999999876431111100 000000000000 0000000 001111
Q ss_pred c-----CCCCceEEEEeC-CEEEEEEC-CCcEEEEECCCCceeeeeccc--ccccCC---CCCEEEEEEeCCceEEEEEE
Q 002234 788 N-----SSKYPKCLALVQ-GKVYCGCQ-DGAIQEIDLATGTFATIQTGH--RKLLGK---ANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 788 ~-----~~~~v~~v~~~~-~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~--~~~~~h---~~~V~~l~~~~~~~~l~s~s 855 (949)
. ....|+.+.|.+ ..|++++. |+.|++||+++........+. ..+..| ...+.++..+..|.++...+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 1 123466677765 56888777 999999999988766443322 223333 34567777777677776666
Q ss_pred CCCCEEEEEECCCCe--eEEeecCC---CcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 856 LDGAAVKMWSTSNYN--MVGSLPTL---SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~--~~~~~~~~---~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
.|+ .|..||+.+.. ++..+.+. .....-..+|| ++++|+.|...++|.+.+.+.--.+..||.-.|++++|.
T Consensus 291 tD~-sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 291 TDN-SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred cCC-cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 786 99999998643 33333321 11122234566 899999999999999999876666667999999999998
Q ss_pred CCC-CEEEEEeCCCcEEEEeC
Q 002234 929 DNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 929 pdg-~~L~sgs~Dg~I~iWdl 948 (949)
|.. .-++|+++|.+++||++
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cccCCCceeeccCcceEEEec
Confidence 743 34777799999999997
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=1.9e-20 Score=184.33 Aligned_cols=266 Identities=15% Similarity=0.188 Sum_probs=204.8
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~ 700 (949)
++|.+......+..+|..|++++.|.++.||-.. +.+-++.||++.|+|++.+.+ .+++|+.|.++++||+++|
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-- 84 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-- 84 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC--
Confidence 4455555666677799999999999999999774 577889999999999998875 9999999999999999999
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeC-----CCcEEEEECCCCe------eEEEEeecCCCceeeeeeccceEEEE
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSL-----DKTARVWSIGNEE------IHCVQVHDIKDQIQNLAVSNSILCFI 769 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-----Dg~I~vWd~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~fs 769 (949)
+++.+++ ...+|..+.|+++|++++.... .+.|.++|++... -.........+.+.... |.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~-------Wg 156 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL-------WG 156 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee-------ec
Confidence 7888885 6778999999999998877654 4679999998432 11222222334444444 99
Q ss_pred eCCCEEEEEEecCeEEEecCC-------------CCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccC
Q 002234 770 PQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 834 (949)
Q Consensus 770 p~g~~l~~~~~~g~i~~~~~~-------------~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 834 (949)
|-++.++.+..+|.+..|+.. ..|+.+.+++ .++++|+.|.+-++||..+-+.++.+..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------ 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ 230 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------
Confidence 999999999999999999843 4577788876 4599999999999999999988866553
Q ss_pred CCCCEEEEEEeCCceEEEEEEC-CCCEEEEEECCCCe------------eEEeec-CCCcEEEEEEcCC--EEEEEECCC
Q 002234 835 KANPVHALQVHNGLVYTASTSL-DGAAVKMWSTSNYN------------MVGSLP-TLSEVRAMVVSSE--LVYLGCKGG 898 (949)
Q Consensus 835 h~~~V~~l~~~~~~~~l~s~s~-Dg~~I~iwd~~~~~------------~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg 898 (949)
..||++.+++|-...++.++. +-..|.-=+.+.++ .+..++ |-++|++++|+|+ ..++|+.||
T Consensus 231 -e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 231 -ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred -cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 368999999997776666542 21222222222332 334444 6789999999999 688999999
Q ss_pred eEEEEECCC
Q 002234 899 TVEIWDQKR 907 (949)
Q Consensus 899 ~I~vwd~~~ 907 (949)
.|++...+.
T Consensus 310 ~VR~h~Fd~ 318 (327)
T KOG0643|consen 310 YVRLHHFDS 318 (327)
T ss_pred eEEEEEecc
Confidence 999986654
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=5.9e-20 Score=212.70 Aligned_cols=255 Identities=18% Similarity=0.245 Sum_probs=198.3
Q ss_pred CCCCceEEEEEeCC--EEEEEe--CCCcEEEEecCCC----------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCC
Q 002234 666 SENGKVLSIACFRD--KIFSGH--SDGTIKVWTGRGS----------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 731 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~lasgs--~Dg~I~vWd~~t~----------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D 731 (949)
.++..|.+++.+|+ .++||+ .||.++||+.+.- -.+.+.+...|.+.|+|+.|+|||++||+||+|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 34567999999998 999999 9999999986521 124566778899999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CEEEEEECC
Q 002234 732 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQD 809 (949)
Q Consensus 732 g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~l~sgs~D 809 (949)
+.|.||+..... .+.+ |...|...-+-.|.-...+..|...|..+.+++ ..+++++.|
T Consensus 91 ~~v~iW~~~~~~---------~~~~-----------fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 91 RLVMIWERAEIG---------SGTV-----------FGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceEEEeeecccC---------Cccc-----------ccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 999999977410 0000 222222222222333333444666666666664 358999999
Q ss_pred CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-------CCcEE
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------LSEVR 882 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~-------~~~v~ 882 (949)
++|.+||..+.+.+ ..+.+|...|..+.|+|-|+|+++-+.| ++|++|++.+....+.+.. ...+.
T Consensus 151 nsViiwn~~tF~~~------~vl~~H~s~VKGvs~DP~Gky~ASqsdD-rtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 151 NSVIIWNAKTFELL------KVLRGHQSLVKGVSWDPIGKYFASQSDD-RTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred ceEEEEccccceee------eeeecccccccceEECCccCeeeeecCC-ceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 99999999999776 6788999999999999999999999987 5999999988888777762 35688
Q ss_pred EEEEcCC--EEEEEE----CCCeEEEEECCCCcEEEEeccccccceeEEEEeCC--------C-----C----EEEEEeC
Q 002234 883 AMVVSSE--LVYLGC----KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN--------E-----E----FLVIGTS 939 (949)
Q Consensus 883 ~l~~s~d--~l~sgs----~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd--------g-----~----~L~sgs~ 939 (949)
.+.|||| +|++.. ...++.|.+..+.+.-..| .||.+++.++.|+|. | + .+|+|+.
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 9999999 676642 3358999999998888888 599999999999981 1 1 6789999
Q ss_pred CCcEEEEeC
Q 002234 940 DGRIQAWGL 948 (949)
Q Consensus 940 Dg~I~iWdl 948 (949)
|++|.||..
T Consensus 303 DrSlSVW~T 311 (942)
T KOG0973|consen 303 DRSLSVWNT 311 (942)
T ss_pred CccEEEEec
Confidence 999999974
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=189.97 Aligned_cols=271 Identities=13% Similarity=0.248 Sum_probs=213.0
Q ss_pred CCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q 002234 666 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~ 742 (949)
...+.|++|.|+|. .+++++.||++++|.++......++.+.--..+|.+..|.|+|. .++++|.-...+.||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 34688999999997 99999999999999998765567777766678999999999998 8999999999999999998
Q ss_pred eeEEEEeec-C-CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-----------CCCceEEEEeC--CEEEEEE
Q 002234 743 EIHCVQVHD-I-KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ--GKVYCGC 807 (949)
Q Consensus 743 ~~~~~~~~~-~-~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-----------~~~v~~v~~~~--~~l~sgs 807 (949)
+...+.... + ...+.... .+++++++++.+.+|.|.+... .+.+..+.|+. ..|++.+
T Consensus 291 k~~k~~~~~g~e~~~~e~Fe-------VShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFE-------VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccCCCCcccchhheeE-------ecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 643333221 1 12333333 7999999999999999988763 45677777763 4588888
Q ss_pred CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC------CeeEEeec-CCCc
Q 002234 808 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMVGSLP-TLSE 880 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~------~~~~~~~~-~~~~ 880 (949)
.+|.|.+||++...+...+.... .-.-++++.++++.|+++||..| .|.|||..+ .+++.++. -...
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D~G-----~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVDDG-----SVHGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred CCceEEEEecCCcceEEEEeecC-----ccceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhhee
Confidence 99999999999998875443221 11345677789999999999887 999999653 45666655 4678
Q ss_pred EEEEEEcCC--EEEEEE--CCCeEEEEECCCCcEEEEeccc--cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 881 VRAMVVSSE--LVYLGC--KGGTVEIWDQKRQIRIETLQTG--TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 881 v~~l~~s~d--~l~sgs--~dg~I~vwd~~~~~~~~~l~~~--h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|+++.|++| .++.+| .++.+++-.+.+......+... .-+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999 555554 5688999999887776666432 22479999999999999999999999999873
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.5e-20 Score=195.71 Aligned_cols=229 Identities=18% Similarity=0.295 Sum_probs=173.2
Q ss_pred cccEEEEecCCCCeEEEecC------Ccee-----------------eecCCCCceEEEEEeCC---EEEEEeCCCcEEE
Q 002234 639 EMVKVLSNGHDSSADFWNHR------ELVH-----------------VDSSENGKVLSIACFRD---KIFSGHSDGTIKV 692 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~------~~~~-----------------~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~v 692 (949)
.|+++|.|..|..|.|||+. .... ...+|++.|.+++|+.+ .|||||.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 47899999999999999986 1111 13479999999999974 9999999999999
Q ss_pred EecCCCceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeC
Q 002234 693 WTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 771 (949)
Q Consensus 693 Wd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~ 771 (949)
||+.++ ++..++..|++.|.++.|+| .+..|++||.|++|.+.|.+... ..-......+.|..+. |.|.
T Consensus 271 WD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-~s~~~wk~~g~VEkv~-------w~~~ 340 (463)
T KOG0270|consen 271 WDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-NSGKEWKFDGEVEKVA-------WDPH 340 (463)
T ss_pred EEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-ccCceEEeccceEEEE-------ecCC
Confidence 999999 89999999999999999999 68899999999999999998521 0001111122222222 2221
Q ss_pred CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC-ceeeeecccccccCCCCCEEEEEEeCCce-
Q 002234 772 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNGLV- 849 (949)
Q Consensus 772 g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~~~~~- 849 (949)
. +..+++++.||+++-+|+++. +++ ..+..|..+|.++++++...
T Consensus 341 s---------------------------e~~f~~~tddG~v~~~D~R~~~~~v------wt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 341 S---------------------------ENSFFVSTDDGTVYYFDIRNPGKPV------WTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred C---------------------------ceeEEEecCCceEEeeecCCCCCce------eEEEeccCCcceEEecCCCCc
Confidence 1 245889999999999999986 444 56778999999999986554
Q ss_pred EEEEEECCCCEEEEEECCCCeeEEeecC---CCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEE
Q 002234 850 YTASTSLDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRI 911 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~ 911 (949)
++++++.| +.|++|++....+.....+ -+...|+++.|+ .++.|+..+.++|||+.+...+
T Consensus 388 ~l~t~s~d-~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 388 LLSTASTD-KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceeecccc-ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 45566666 5999999875444332222 234677788887 6888998999999999877644
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.3e-19 Score=180.67 Aligned_cols=234 Identities=15% Similarity=0.197 Sum_probs=176.4
Q ss_pred eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 663 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
......+.|++|.|+|. .|+.+++||++++||+... .....+ .|..++.+++|.+ ...+++|+.||.|+.+|++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 34456789999999974 7777889999999999987 455555 5999999999986 4679999999999999999
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 820 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~ 820 (949)
++. ......|..++.++. +++- .+.+++|+.|++|++||.+..
T Consensus 84 ~~~--~~~igth~~~i~ci~-------~~~~----------------------------~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 84 TGN--EDQIGTHDEGIRCIE-------YSYE----------------------------VGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred CCc--ceeeccCCCceEEEE-------eecc----------------------------CCeEEEcccCccEEEEecccc
Confidence 984 333334455555554 2221 356999999999999999974
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---CCCcEEEEEEcCC--EEEEEE
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--LVYLGC 895 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~d--~l~sgs 895 (949)
.....+. ....|.++....+... .++.| +.+.+||+++........ -...++++++.|+ .+++++
T Consensus 127 ~~~~~~d-------~~kkVy~~~v~g~~Lv--Vg~~~-r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 127 VVVGTFD-------QGKKVYCMDVSGNRLV--VGTSD-RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred ccccccc-------cCceEEEEeccCCEEE--EeecC-ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 4432221 2347888877765544 33334 699999999866544332 3567899999996 899999
Q ss_pred CCCeEEEEECCCC----cEEEEecccccc---------ceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 896 KGGTVEIWDQKRQ----IRIETLQTGTSG---------KVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 896 ~dg~I~vwd~~~~----~~~~~l~~~h~~---------~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
-||.|.+=.++.. ..-..|+ .|.. +|++++|+|-...|+||+.||.|.+||+
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 9999998877765 3344443 3332 8999999999999999999999999996
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=5e-20 Score=194.60 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=184.5
Q ss_pred cccccccEEEEecCCCCeEEEecCC------------ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI 699 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~ 699 (949)
-+.-++..+++++..+.|.|||..+ ....+.+|++.=++++|++. .+++|+.|++|++||+....
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 3444667888999999999999862 12267899998899999985 99999999999999997542
Q ss_pred -----eeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCC
Q 002234 700 -----LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQG 772 (949)
Q Consensus 700 -----~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g 772 (949)
..+...+.+|++.|..++|++ +.+++++++.|+.+.|||++++. ........|..+++++. |+|-+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~-------fnp~~ 284 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA-------FNPFN 284 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE-------eCCCC
Confidence 345677899999999999999 67789999999999999999632 12333445677788877 66665
Q ss_pred CEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC-ceEE
Q 002234 773 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYT 851 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l 851 (949)
.. .|++|+.|++|.+||+++-.... ..+.+|...|..|.|+|+ ...+
T Consensus 285 ~~---------------------------ilAT~S~D~tV~LwDlRnL~~~l-----h~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 285 EF---------------------------ILATGSADKTVALWDLRNLNKPL-----HTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred Cc---------------------------eEEeccCCCcEEEeechhcccCc-----eeccCCCcceEEEEeCCCCCcee
Confidence 54 38999999999999999866532 678999999999999986 4566
Q ss_pred EEEECCCCEEEEEECCCCeeEE------------eec---CCCcEEEEEEcCC---EEEEEECCCeEEEEECC
Q 002234 852 ASTSLDGAAVKMWSTSNYNMVG------------SLP---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 852 ~s~s~Dg~~I~iwd~~~~~~~~------------~~~---~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~ 906 (949)
++++.|+ .+.+||+..-...+ .|. |...|..+.|+|+ .+++.+.|+.+.||...
T Consensus 333 ASSg~D~-rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 333 ASSGTDR-RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EecccCC-cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7777775 99999986422211 233 5678999999998 78999999999999975
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.5e-20 Score=182.57 Aligned_cols=254 Identities=15% Similarity=0.235 Sum_probs=200.1
Q ss_pred ccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEec------CCC-----------
Q 002234 640 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG------RGS----------- 698 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~------~t~----------- 698 (949)
...+.+++.|.+.++|.++ .++..+.||.|.|.++.|++. ++++++.|++-.||.. ...
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 3478899999999999998 578889999999999999985 8999999999999972 110
Q ss_pred ---------------------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCcee
Q 002234 699 ---------------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 699 ---------------------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~ 757 (949)
...++..+.+|.+.|.+..|-..|+.++++|+|.+..+||+++|++ ......|....+
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~-v~~LtGHd~ELt 318 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV-VNILTGHDSELT 318 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce-eccccCcchhcc
Confidence 0135678899999999999999999999999999999999999962 222223445555
Q ss_pred eeeeccceEEEEeCCCEEEEEEecCeEEEecCC-------------CCceEEEEe-CCEEEEEECCCcEEEEECCCCcee
Q 002234 758 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFA 823 (949)
Q Consensus 758 ~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~-------------~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~ 823 (949)
... -.|..+.+++.+.|.+.++|+.. ..|+++.|. ++++++|+.|.+|++||+++....
T Consensus 319 Hcs-------tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 319 HCS-------THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred ccc-------cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc
Confidence 544 67888889999999999999854 445555565 456999999999999999976543
Q ss_pred eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEee----c-CCCcEEEEEEcCC----EEEEE
Q 002234 824 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL----P-TLSEVRAMVVSSE----LVYLG 894 (949)
Q Consensus 824 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~----~-~~~~v~~l~~s~d----~l~sg 894 (949)
. .......+++.++++.++..++.- .|++.|++||+...+..+.- . |...|.|++|..+ .++++
T Consensus 392 l------ATIRtdS~~NRvavs~g~~iIAiP-hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftc 464 (481)
T KOG0300|consen 392 L------ATIRTDSPANRVAVSKGHPIIAIP-HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC 464 (481)
T ss_pred c------eeeecCCccceeEeecCCceEEec-cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccc
Confidence 1 112234789999999888877765 46689999999765443322 1 5677999999876 68899
Q ss_pred ECCCeEEEEECCCC
Q 002234 895 CKGGTVEIWDQKRQ 908 (949)
Q Consensus 895 s~dg~I~vwd~~~~ 908 (949)
+.|..+.=|++.+.
T Consensus 465 GFDR~v~gW~in~p 478 (481)
T KOG0300|consen 465 GFDRMVAGWKINTP 478 (481)
T ss_pred cccceeeeeEeccc
Confidence 99999999998764
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-19 Score=201.01 Aligned_cols=237 Identities=20% Similarity=0.280 Sum_probs=191.8
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecC--CceeeecC-CCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS-ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~-h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
..+....+..+|.+|+.|..+|.|.|||.. .....+.+ |...|.+++|+...+.+|+.||.|..+|+...+ ....+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~~ 296 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVST 296 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-hhhhh
Confidence 344556677789999999999999999987 34555666 999999999999999999999999999999874 23335
Q ss_pred ecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 706 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 706 l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
+.+|...|..+.|++|+.++|+|+.|+.+.|||..... ......+|...|..++ |+|-..
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~a-------wcP~q~------------ 356 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALA-------WCPWQS------------ 356 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEee-------eCCCcc------------
Confidence 88999999999999999999999999999999995542 4445556677777766 555443
Q ss_pred EecCCCCceEEEEeCCEEEE--EECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE-ECCCCEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYC--GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDGAAVK 862 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~s--gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~Dg~~I~ 862 (949)
+.|++ |+.|+.|++||..++..+.. ..-...|.+|.|++...-++++ +.....|.
T Consensus 357 ---------------~lLAsGGGs~D~~i~fwn~~~g~~i~~-------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 357 ---------------GLLATGGGSADRCIKFWNTNTGARIDS-------VDTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred ---------------CceEEcCCCcccEEEEEEcCCCcEecc-------cccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 33665 46799999999999998732 2234689999999877444433 32224899
Q ss_pred EEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC
Q 002234 863 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 863 iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~ 908 (949)
||+..+.+.+..+. |...|..++++|| .+++|+.|.++++|++-..
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999888888 8889999999999 8999999999999998764
No 120
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=4.2e-20 Score=196.40 Aligned_cols=237 Identities=21% Similarity=0.294 Sum_probs=179.4
Q ss_pred eeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEEEee--cCCCceeeeeeccceEEEEeCCCEEEE
Q 002234 702 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVH--DIKDQIQNLAVSNSILCFIPQGAGIKV 777 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~--~~~~~v~~l~~~~~~~~fsp~g~~l~~ 777 (949)
.-..+++|+..|.++++.|.|-.|+|||.|.+|++||+.... .+.+... .....|.++. |++.|..+++
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~-------ys~Tg~~iLv 231 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQ-------YSVTGDQILV 231 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceee-------ecCCCCeEEE
Confidence 445678999999999999999999999999999999998754 1222211 2345677777 9999999999
Q ss_pred EEecCeEEEecCC------------------------CCceEEEEeC---CEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 778 HLRNGKTKLLNSS------------------------KYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 778 ~~~~g~i~~~~~~------------------------~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
.+.+...+++|.. ..++|..|+| +.+++++.||++++||+...+.....-.++
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 9888888887632 2456777776 459999999999999998765332222223
Q ss_pred cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEeec--CC--CcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 831 KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--TL--SEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~~--~~--~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
...+..-++++.+|++++.+++++..|| .|.+|+..+.. +...+. |. ..|+|+.||+| +|++-+.|+++++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3445667899999999999999999997 99999986533 222222 43 48999999998 8999999999999
Q ss_pred EECCCCc-EEEEecccc--ccceeEEEEeCCCCEEEEEeC------CCcEEEEe
Q 002234 903 WDQKRQI-RIETLQTGT--SGKVQCMALDDNEEFLVIGTS------DGRIQAWG 947 (949)
Q Consensus 903 wd~~~~~-~~~~l~~~h--~~~I~~l~~spdg~~L~sgs~------Dg~I~iWd 947 (949)
||++..+ ++... .+- .-.-+.++||||.++|+||++ .|++.+||
T Consensus 391 WDLrq~kkpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 391 WDLRQFKKPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred eeccccccchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 9998765 33333 222 125578899999999999975 46677776
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.5e-18 Score=188.09 Aligned_cols=257 Identities=19% Similarity=0.225 Sum_probs=209.0
Q ss_pred cccccccccEEEEecCCCCeEEEecCC---ceeeecCC-CCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSE-NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~---~~~~~~~h-~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
..+++.+.+.||.+-.||.|.+|++.. ...++.+| +..|-+++|+++ .|+|.+.+|+|.-||+.++ ++...+.
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d 107 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNID 107 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEec
Confidence 344555677899999999999999983 33344444 578999999975 9999999999999999999 7888888
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
...+.||+++.+|.++.++.|+.||.+...+...+......... .++.+.++. |.|++..++.|+.||.+++
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls-------w~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS-------WNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE-------ecCCccEEEecccCceEEE
Confidence 89999999999999999999999998888888888755444443 358899988 9999999999999999999
Q ss_pred ecCCC--------------------CceEEEEe-CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe
Q 002234 787 LNSSK--------------------YPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 845 (949)
Q Consensus 787 ~~~~~--------------------~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 845 (949)
|+... -|+++.+- ++.+++|..-|+|++||...+..+ ..+..|...|.+++..
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLi------qS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLI------QSHSCHDADVLALAVA 254 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchh------hhhhhhhcceeEEEEc
Confidence 98432 24555553 688999999999999999999988 6777889999999999
Q ss_pred CCceEEEEEECCCCEEEEEECCCCee--E--Eeec-CCCcEEEEEEcCCEEEEEECCCeEEEEEC
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNM--V--GSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~--~--~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~ 905 (949)
+++.++++++.|+ .|.-|...++.. + .... |...+.+++..++.+++|+.|.++.+-..
T Consensus 255 ~~~d~vfsaGvd~-~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 255 DNEDRVFSAGVDP-KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSS 318 (691)
T ss_pred CCCCeEEEccCCC-ceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccc
Confidence 9999999999998 555555444322 1 1122 67889999999998888888887776543
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=199.03 Aligned_cols=255 Identities=14% Similarity=0.151 Sum_probs=204.5
Q ss_pred ccEEEEecCCCCeEEEecCCcee---------------------------------------eecCCCCceEEEEEeCC-
Q 002234 640 MVKVLSNGHDSSADFWNHRELVH---------------------------------------VDSSENGKVLSIACFRD- 679 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~---------------------------------------~~~~h~~~V~~l~~s~d- 679 (949)
..-++|++.|++||+||+..+.. ...+....+.+++.+|+
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 34588999999999999762110 01123457999999998
Q ss_pred -EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCc
Q 002234 680 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 755 (949)
Q Consensus 680 -~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp---dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 755 (949)
+||+|..-|+++|||+..- .....+..|...|.|+.|+. ..++|+++|.|..|.|+|+..+-.......+|...
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred ceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 9999999999999999987 67778889999999999986 35789999999999999998764334444567889
Q ss_pred eeeeeeccceEEEEeCC--CEEEEEEecCeEEEe-----------c------CCCCceEEEEeC--CEEEEEECCCcEEE
Q 002234 756 IQNLAVSNSILCFIPQG--AGIKVHLRNGKTKLL-----------N------SSKYPKCLALVQ--GKVYCGCQDGAIQE 814 (949)
Q Consensus 756 v~~l~~~~~~~~fsp~g--~~l~~~~~~g~i~~~-----------~------~~~~v~~v~~~~--~~l~sgs~Dg~I~i 814 (949)
|+++. |.-.| ..+++.+.|..+.+- . ....+..|++.+ +++++++.|..|+|
T Consensus 550 ITsvK-------Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrniri 622 (1080)
T KOG1408|consen 550 ITSVK-------FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRI 622 (1080)
T ss_pred eeEEE-------EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEE
Confidence 99998 66665 445555545433221 1 123456667766 56999999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EE
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LV 891 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l 891 (949)
||+.+|+....+.+. .+|.+..-.+..+|.+.|+++...| +++.++|..+|+++.+.. |...|+.+.|.+| .+
T Consensus 623 f~i~sgKq~k~FKgs---~~~eG~lIKv~lDPSgiY~atScsd-ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl 698 (1080)
T KOG1408|consen 623 FDIESGKQVKSFKGS---RDHEGDLIKVILDPSGIYLATSCSD-KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL 698 (1080)
T ss_pred Eeccccceeeeeccc---ccCCCceEEEEECCCccEEEEeecC-CceEEEEeccchhhhhhcCcchheeeeeecccchhh
Confidence 999999998776543 4577788889999999999999988 599999999999998887 7788999999999 89
Q ss_pred EEEECCCeEEEEECCC
Q 002234 892 YLGCKGGTVEIWDQKR 907 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~ 907 (949)
++.+.||.|.||.+..
T Consensus 699 ISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 699 ISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeecCCceEEEEECch
Confidence 9999999999999864
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=6.7e-18 Score=179.37 Aligned_cols=294 Identities=15% Similarity=0.233 Sum_probs=220.2
Q ss_pred cccEEEEecCCCCeEEEecCC-----ceeeecCC-CCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 639 EMVKVLSNGHDSSADFWNHRE-----LVHVDSSE-NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h-~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
+.+.+++.|. +.+.+|++.. ..-++..+ ..-|.|++|.+| -+++|..+|+|.||+..+. +..+....|.+
T Consensus 212 d~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~--~~~k~~~aH~g 288 (626)
T KOG2106|consen 212 DPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN--RISKQVHAHDG 288 (626)
T ss_pred CCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc--eEEeEeeecCC
Confidence 5667777665 6688998873 22233333 367999999997 9999999999999999888 56666669999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC--eEEEecC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG--KTKLLNS 789 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g--~i~~~~~ 789 (949)
.|.+++.-.+|.+ +||+.|..|..||-+-.+.+.....+..+++..+.-....+..-...+.+.-++.++ ++.+..+
T Consensus 289 gv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh 367 (626)
T KOG2106|consen 289 GVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH 367 (626)
T ss_pred ceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec
Confidence 9999999999975 559999999999954444455555666677777653322222333333333333332 2234456
Q ss_pred CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 790 SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 790 ~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
......++.++ +.+++++.|+.+++|+ ..+..... . -..+..++.|+|.+ .++.++..| ...+.|..
T Consensus 368 ~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~----~---~~d~~~~~~fhpsg-~va~Gt~~G-~w~V~d~e 436 (626)
T KOG2106|consen 368 GDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK----I---IEDPAECADFHPSG-VVAVGTATG-RWFVLDTE 436 (626)
T ss_pred ccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE----E---ecCceeEeeccCcc-eEEEeeccc-eEEEEecc
Confidence 67777888776 5699999999999999 33333221 1 23689999999999 788888887 88999999
Q ss_pred CCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC-cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 868 NYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 868 ~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~-~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
+...+.......+++++.|+|+ +++.|+.|+.|+||-+... .........|..+|+.+.||+|++++.+-+-|-.|.
T Consensus 437 ~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 437 TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred cceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEE
Confidence 9777766667889999999998 8999999999999998654 444444334557999999999999999999999999
Q ss_pred EEe
Q 002234 945 AWG 947 (949)
Q Consensus 945 iWd 947 (949)
.|.
T Consensus 517 yW~ 519 (626)
T KOG2106|consen 517 YWK 519 (626)
T ss_pred EEc
Confidence 994
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=4.7e-21 Score=211.25 Aligned_cols=248 Identities=17% Similarity=0.299 Sum_probs=207.0
Q ss_pred EEEecCCCCeEEEecCCceeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec
Q 002234 643 VLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ 720 (949)
Q Consensus 643 l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp 720 (949)
+..+..+-.+++|+.+. +..|...|.++..-. ..+++|+.|..+.+|.+... ..+..|.+|..+|-++.|++
T Consensus 7 ~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDT 80 (825)
T ss_pred cceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCc
Confidence 34445556677888753 446777787777633 38999999999999999776 67778999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 721 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 721 dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
+..+|++|+.||+|++||++..+ .......|...+.++. |+|-|.+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~-------f~P~~~~-------------------------- 126 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVD-------FHPYGEF-------------------------- 126 (825)
T ss_pred chhhhcccccCCceeeeehhhhh-hhhhhhccccCcceee-------eccceEE--------------------------
Confidence 99999999999999999999874 1223334556666665 6666653
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCC
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS 879 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~ 879 (949)
.+.|+.|+.+.+||++...+. ..+.+|...|..+.|+|+|.|+++++.|. ++++||...|+....|+ |..
T Consensus 127 --~a~gStdtd~~iwD~Rk~Gc~------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~e~ 197 (825)
T KOG0267|consen 127 --FASGSTDTDLKIWDIRKKGCS------HTYKSHTRVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSHEG 197 (825)
T ss_pred --eccccccccceehhhhccCce------eeecCCcceeEEEeecCCCceeeccCCcc-eeeeecccccccccccccccc
Confidence 577899999999999977777 45667889999999999999999999875 99999999999999999 889
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
.+.++.|+|. .++.|+.|+++++||+++.+.+.... .....|.+.+|+|++..+++|..+
T Consensus 198 ~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 198 KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchh
Confidence 9999999998 78889999999999999999888885 456789999999999998888654
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.8e-20 Score=208.45 Aligned_cols=234 Identities=15% Similarity=0.223 Sum_probs=189.9
Q ss_pred ccccccccEEEEecCCCCeEEEecCC-----ceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
.+-+++.++|++++..|.|.+||+.. .+..+..|+..+++++|++ ++|+|||.||+|++||++.. ....+
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t 171 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKST 171 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--ccccc
Confidence 44477899999999999999999974 4567889999999999996 59999999999999999988 77888
Q ss_pred ecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 706 IREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 706 l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+.+....|..|.|+| .+..++++...|.+++||++...........|.++|.++. |+|++.+
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n-------whPnr~~---------- 234 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN-------WHPNREW---------- 234 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe-------ecCCCce----------
Confidence 889999999999999 7899999999999999999987655566667889998888 8886654
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEE-EEEE-CCCCEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT-ASTS-LDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s-~Dg~~I~ 862 (949)
|++|+.|+.|+|||+.++...... ......+|..|.|-|...+. ++++ .++..|+
T Consensus 235 ------------------lATGGRDK~vkiWd~t~~~~~~~~-----tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~ 291 (839)
T KOG0269|consen 235 ------------------LATGGRDKMVKIWDMTDSRAKPKH-----TINTIAPVGRVKWRPARSYHLATCSMVVDTSVH 291 (839)
T ss_pred ------------------eeecCCCccEEEEeccCCCcccee-----EEeecceeeeeeeccCccchhhhhhccccceEE
Confidence 899999999999999876544221 11234789999999876653 3332 2346999
Q ss_pred EEECCC-CeeEEeec-CCCcEEEEEEcC-C--EEEEEECCCeEEEEECCCCc
Q 002234 863 MWSTSN-YNMVGSLP-TLSEVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 863 iwd~~~-~~~~~~~~-~~~~v~~l~~s~-d--~l~sgs~dg~I~vwd~~~~~ 909 (949)
|||++. .-+..++. |...++.++|.. | .+.+++.||+|..-.++++.
T Consensus 292 VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 292 VWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 999975 44556666 788899999964 3 89999999998766665543
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=2.7e-20 Score=196.84 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=192.3
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCCc----eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
.++.+.+.+||..|++||.-.++.|||+... ...+....-..++++.+|| ..+++..||.|.|||+.+. ..+
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~V 544 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLV 544 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eee
Confidence 5678889999999999999999999998732 2222333456788999997 8889999999999999998 899
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
+.|+||++.+.||.+++||..|.||+-|.+||.||++++ ..+..++....|.++. .+|++.+
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqqhdF~SQIfSLg-------~cP~~dW--------- 606 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQHDFSSQIFSLG-------YCPTGDW--------- 606 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh--hhhhhhhhhhhheecc-------cCCCccc---------
Confidence 999999999999999999999999999999999999998 5666677788888887 7888886
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+++|-.++.+.+........ ..+.-|...|.++.|.+-|.++++.+.|+ .+..
T Consensus 607 -------------------lavGMens~vevlh~skp~k-------yqlhlheScVLSlKFa~cGkwfvStGkDn-lLna 659 (705)
T KOG0639|consen 607 -------------------LAVGMENSNVEVLHTSKPEK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNA 659 (705)
T ss_pred -------------------eeeecccCcEEEEecCCccc-------eeecccccEEEEEEecccCceeeecCchh-hhhh
Confidence 55555555555555443332 34456888999999999999999999997 9999
Q ss_pred EECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEEC
Q 002234 864 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 864 wd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~ 905 (949)
|.+.-|..+...+..+.|.++.+|.| ++++|+.|....||.+
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999988888999999999877 9999999988888764
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=1.7e-18 Score=183.85 Aligned_cols=308 Identities=13% Similarity=0.217 Sum_probs=232.1
Q ss_pred hhHhhhccccccccccEEEEecCCC--------CeEEEecC--CceeeecCCCCceEEEEEeC-C---EEEE--EeCCCc
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDS--------SADFWNHR--ELVHVDSSENGKVLSIACFR-D---KIFS--GHSDGT 689 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg--------~I~vWd~~--~~~~~~~~h~~~V~~l~~s~-d---~las--gs~Dg~ 689 (949)
+|..-+...++.++--.+++|..-| .+|+||.. +.++++......|.|++|++ + +++. -+.+..
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~ 181 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM 181 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccc
Confidence 3344455667777777777765554 48999976 34556667788899999998 2 3333 345677
Q ss_pred EEEEecCCCceeeeEEecccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeE-EEEee--cCCCceeeeeeccce
Q 002234 690 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIH-CVQVH--DIKDQIQNLAVSNSI 765 (949)
Q Consensus 690 I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~-~~~~~--~~~~~v~~l~~~~~~ 765 (949)
+.|||...+ ......+.-...|....|+|.+ +++++.+ .|.+..|+.+++.+. ....+ ..+..|.++.
T Consensus 182 lSVWdWqk~--~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~----- 253 (626)
T KOG2106|consen 182 LSVWDWQKK--AKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT----- 253 (626)
T ss_pred cchhhchhh--hccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEE-----
Confidence 999999887 5666666677889999999954 5555555 578999999988632 22222 2235677776
Q ss_pred EEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEe-CCEEEEEECCCcEEEEECCCCceee--------
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFAT-------- 824 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~-------- 824 (949)
|.++|+ +++++.+|.+.+|+. .+.|.++... +|.|++|+.|..|..||-.-.+...
T Consensus 254 --F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 254 --FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred --EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcC
Confidence 999887 568888999999974 4566666665 5789999999999999932111100
Q ss_pred ----eecc----------------------cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC
Q 002234 825 ----IQTG----------------------HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL 878 (949)
Q Consensus 825 ----~~~~----------------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~ 878 (949)
+.++ .....+|......++.+|+...+++++.|+ .+++|+ ..++..+....
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk-~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK-HVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc-eEEEcc--CCceeEEEEec
Confidence 0000 012356888889999999999999999995 999999 67777777788
Q ss_pred CcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 879 SEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 879 ~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+..++.|+|. .++.|+..|...|.|.++...+..- .. ..++++++|+|||.+||.|+.|+.|+||-++
T Consensus 408 d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 408 DPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred CceeEeeccCcceEEEeeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 89999999998 7899999999999999996665555 34 6799999999999999999999999999764
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.7e-19 Score=188.40 Aligned_cols=277 Identities=15% Similarity=0.176 Sum_probs=208.7
Q ss_pred eeeecCCCCceEEEEEeCC----EEEEEeCCCcEEEEecCCC--ceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCc
Q 002234 661 VHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGS--ILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKT 733 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~--~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~ 733 (949)
..+..-|.++|++++|+|- ++++|+.-|+|-+||+.+. ...-+..+..|..+|.++.|+| +...+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 4456678999999999993 8999999999999999633 1245667788999999999999 6678999999999
Q ss_pred EEEEECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-------------CCCceEEEEe
Q 002234 734 ARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALV 799 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-------------~~~v~~v~~~ 799 (949)
|+.-|++++....+... .....+.++. |+.+...+..+..-|...+|++ ...|.+++++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d-------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLD-------FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeecc-------ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 99999998752222222 1223334444 6666676666666667777763 4578999998
Q ss_pred C---CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC----CCCeeE
Q 002234 800 Q---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST----SNYNMV 872 (949)
Q Consensus 800 ~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~----~~~~~~ 872 (949)
| -.+++++.|++.+|||++.-..... +......|...|++..|+|.+-.+++.+.|+ .|+|||. ....+.
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCC-ceEEeecccccccCCcc
Confidence 6 4599999999999999986443321 1134567999999999999888899999996 9999998 345556
Q ss_pred EeecCCC------cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEE-EEeCCCCEEEEE-eCCCc
Q 002234 873 GSLPTLS------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIG-TSDGR 942 (949)
Q Consensus 873 ~~~~~~~------~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l-~~spdg~~L~sg-s~Dg~ 942 (949)
.++.|.. ......|.|| ++++|-.-..|-|+|-+.++.+..+.......|.++ .|+|-+..+++| +..|.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccce
Confidence 6666532 2345678888 788898888999999999998888744444456554 799988855554 56788
Q ss_pred EEEEe
Q 002234 943 IQAWG 947 (949)
Q Consensus 943 I~iWd 947 (949)
|+||-
T Consensus 489 i~vft 493 (498)
T KOG4328|consen 489 IYVFT 493 (498)
T ss_pred EEEEe
Confidence 99984
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.5e-19 Score=199.79 Aligned_cols=238 Identities=20% Similarity=0.267 Sum_probs=192.7
Q ss_pred cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002234 665 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~ 742 (949)
..|++.-+.++|.|+ +|++++.||.|++|+..... ..-.++..|...|.+++- ++.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 579999999999996 99999999999999987652 122233337778887775 5669999999999999999887
Q ss_pred eeE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc
Q 002234 743 EIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 821 (949)
Q Consensus 743 ~~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~ 821 (949)
+.. .+..+ .-++..+. |+.+|+ .++.|+.|-.|++.+.....
T Consensus 87 ~~~~iL~Rf--tlp~r~~~-------v~g~g~----------------------------~iaagsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 87 EEDTILARF--TLPIRDLA-------VSGSGK----------------------------MIAAGSDDTAVKLLNLDDSS 129 (933)
T ss_pred Cccceeeee--eccceEEE-------EecCCc----------------------------EEEeecCceeEEEEeccccc
Confidence 522 11111 22333333 555554 48889999999999998887
Q ss_pred eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC---------CCcEEEEEEcCC--E
Q 002234 822 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---------LSEVRAMVVSSE--L 890 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~---------~~~v~~l~~s~d--~ 890 (949)
.. +.+.+|..+|.++.|+|++.++++.+.|| .|++||+.++.+..++.. ...+..++|+|+ .
T Consensus 130 ~~------~~lrgh~apVl~l~~~p~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 130 QE------KVLRGHDAPVLQLSYDPKGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred hh------eeecccCCceeeeeEcCCCCEEEEEecCc-eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 76 67789999999999999999999999998 999999999988777652 244677999999 6
Q ss_pred EEEEECCCeEEEEECCCCcEEEEecccccc-ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 891 VYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 891 l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~-~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++..+.|+.|++|+..++.....+...+.. .+..+.|+|+|+|||+++.||.|.|||++
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 888899999999999999998888655444 49999999999999999999999999974
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=197.50 Aligned_cols=269 Identities=19% Similarity=0.234 Sum_probs=213.0
Q ss_pred ccccccccEEEEecCCCCeEEEecCC---ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccC
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 710 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 710 (949)
..+.++|..|.+++.||.|++|+... ......-|...|.+++...++|++|+.+++|.+|....+ ..-..+...+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~--~~~~iL~Rft 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG--EEDTILARFT 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC--Cccceeeeee
Confidence 44566889999999999999998752 122233388899999999999999999999999999988 4444455567
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
-++.+++|+-+|++++.||.|-.|++-+..+.. .......|..+|.++. |.|++..
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~-------~~p~~~f---------------- 152 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLS-------YDPKGNF---------------- 152 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeee-------EcCCCCE----------------
Confidence 889999999999999999999999999998864 4455566788888888 8888775
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccC--CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG--KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 868 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~ 868 (949)
|++.+.||.|++||+.++.+...+.+...-.+ ....+..++|+|++..++..+.|+ +|++|+..+
T Consensus 153 ------------LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~ 219 (933)
T KOG1274|consen 153 ------------LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG 219 (933)
T ss_pred ------------EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC
Confidence 78888999999999999887755443222111 145678899999977777777786 999999999
Q ss_pred CeeEEeec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcE
Q 002234 869 YNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 943 (949)
Q Consensus 869 ~~~~~~~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 943 (949)
+.....+. +...+..+.|+|+ |||+++.||.|.|||+++... + .....|.+++|.|+.+.+-.-...|+.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cccceeEEEecCCCCCeeEEEeecccc
Confidence 99888887 3455999999999 899999999999999998332 1 123479999999999877655555554
Q ss_pred EEE
Q 002234 944 QAW 946 (949)
Q Consensus 944 ~iW 946 (949)
.+|
T Consensus 295 ~~~ 297 (933)
T KOG1274|consen 295 GVS 297 (933)
T ss_pred ccC
Confidence 443
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2e-20 Score=206.40 Aligned_cols=218 Identities=21% Similarity=0.402 Sum_probs=185.2
Q ss_pred cccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
+......+..+++||.|..+-+|.... .+..+.+|.++|-++.|+.+ +|+.|+.+|+|++||++.. +.++++.+
T Consensus 33 ~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtg 110 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTG 110 (825)
T ss_pred eeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhc
Confidence 333344567899999999999999873 44557899999999999986 8999999999999999998 78999999
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
|...+.++.|+|-+.+.++|+.|+.+++||++... |.... .|...+..+. |+|+|++
T Consensus 111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~-------lsP~Gr~------------- 168 (825)
T KOG0267|consen 111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLR-------LSPDGRW------------- 168 (825)
T ss_pred cccCcceeeeccceEEeccccccccceehhhhccC--ceeeecCCcceeEEEe-------ecCCCce-------------
Confidence 99999999999999999999999999999998532 22222 2555566666 8999886
Q ss_pred cCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 788 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
++.|+.|.++++||...|+.. ..|.+|...+.++.|||...++++||.|. ++++||++
T Consensus 169 ---------------v~~g~ed~tvki~d~~agk~~------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-tv~f~dle 226 (825)
T KOG0267|consen 169 ---------------VASGGEDNTVKIWDLTAGKLS------KEFKSHEGKVQSLEFHPLEVLLAPGSSDR-TVRFWDLE 226 (825)
T ss_pred ---------------eeccCCcceeeeecccccccc------cccccccccccccccCchhhhhccCCCCc-eeeeeccc
Confidence 777888999999999999988 67888999999999999999999999996 99999999
Q ss_pred CCeeEEeec-CCCcEEEEEEcCC--EEEEEEC
Q 002234 868 NYNMVGSLP-TLSEVRAMVVSSE--LVYLGCK 896 (949)
Q Consensus 868 ~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~ 896 (949)
+...+.... ....|.+..|+|+ .+++|..
T Consensus 227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 999888777 4678999999999 4455543
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.7e-18 Score=187.24 Aligned_cols=268 Identities=15% Similarity=0.194 Sum_probs=202.1
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARV 736 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~v 736 (949)
+..++.||++.|.++...|. .|++|+.||+|+||.+.|+ .|++++. ..+.|.||+|+|.++ .++.++.++.+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 45578899999999999885 9999999999999999999 8998885 566899999999764 2333333333544
Q ss_pred EECCCCe------------------------------------eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 737 WSIGNEE------------------------------------IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 737 Wd~~~~~------------------------------------~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
-+..-|. ........+...|..+. |...|.++++..-
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt-------WHrkGDYlatV~~ 541 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT-------WHRKGDYLATVMP 541 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee-------eecCCceEEEecc
Confidence 4433221 00111223344555555 8999999988776
Q ss_pred cCe---EEEec------------CCCCceEEEEeCC--EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEE
Q 002234 781 NGK---TKLLN------------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 843 (949)
Q Consensus 781 ~g~---i~~~~------------~~~~v~~v~~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 843 (949)
++. +.+.. ..+.|.++.|++. ++++++ -..|++||+.....+ +++......|..++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelv------KkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELV------KKLLTGSKWISSMS 614 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHH------HHHhcCCeeeeeee
Confidence 532 22222 3467899999984 355554 578999999987766 55556667899999
Q ss_pred EeCCceEEEEEECCCCEEEEEECCCC-eeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCC---------CcE
Q 002234 844 VHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR---------QIR 910 (949)
Q Consensus 844 ~~~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~---------~~~ 910 (949)
.||.|..++.++.|+ .+..+|+.-. ++.+++. |...+++++|++. .+++|+.||++.||.-.- -.+
T Consensus 615 ihp~GDnli~gs~d~-k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDK-KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred ecCCCCeEEEecCCC-eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 999999999999996 9999999754 5666666 7788999999998 799999999999986321 125
Q ss_pred EEEeccccccc----eeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 911 IETLQTGTSGK----VQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 911 ~~~l~~~h~~~----I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
+..+ .+|... |....|+|...+|++++.||+|++|
T Consensus 694 lK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 5666 477654 8889999999999999999999999
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.4e-19 Score=175.91 Aligned_cols=259 Identities=13% Similarity=0.185 Sum_probs=192.7
Q ss_pred eEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 002234 671 VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ 748 (949)
Q Consensus 671 V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~ 748 (949)
..|+.|++. +||+|+.||.|.|||+.|. ..-+.+.+|..+|++++||+||+.|+|+|.|..|++||+..|. +..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--cee
Confidence 789999984 9999999999999999998 6778899999999999999999999999999999999999985 555
Q ss_pred eecCCCceeeeeeccceEEEEeCCCEEEEEE-----------ecCeEEEecC--CC----CceEEEEe--CCEEEEEECC
Q 002234 749 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHL-----------RNGKTKLLNS--SK----YPKCLALV--QGKVYCGCQD 809 (949)
Q Consensus 749 ~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~-----------~~g~i~~~~~--~~----~v~~v~~~--~~~l~sgs~D 809 (949)
......+|.... |.|..+..++.. .++.-++... .+ ...+..|. +.++++|...
T Consensus 102 rirf~spv~~~q-------~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIRFDSPVWGAQ-------WHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEEccCccceee-------eccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence 555677888777 444333221111 1122121111 11 11122233 4679999999
Q ss_pred CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC-------e--eEEeec---C
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-------N--MVGSLP---T 877 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~-------~--~~~~~~---~ 877 (949)
|.+.+||..+-+++..+.-. ....|..+.++..+.+++..+.| +.||.|+++.- . +.+.+. .
T Consensus 175 Gkllv~~a~t~e~vas~rit-----s~~~IK~I~~s~~g~~liiNtsD-RvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRIT-----SVQAIKQIIVSRKGRFLIINTSD-RVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred ceEEEEecchheeeeeeeec-----hheeeeEEEEeccCcEEEEecCC-ceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 99999999998887543211 13678999999999999999888 69999998631 1 112222 2
Q ss_pred CCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEeccccc-cceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 878 LSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 878 ~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~-~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...-.+++||.+ +++.|+ .-..++||....|.+++.+. |.. .....+.|+|-...+++- ..|.|+||..
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 344567888888 555554 34689999999999999995 555 578889999998888877 7899999974
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=185.33 Aligned_cols=252 Identities=15% Similarity=0.214 Sum_probs=198.4
Q ss_pred cEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEE
Q 002234 641 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 718 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~f 718 (949)
..+++|+.||.|++||.. .+...+..|.|.|..+++....+++++.|.+|+.|.++.. +.+++.+ ...+..+.-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~tilg-~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTILG-KSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC---cceeeec-ccccccccc
Confidence 468899999999999998 4788899999999999999999999999999999998874 6777643 455777777
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEE-EEecCeEEEecCCC------
Q 002234 719 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV-HLRNGKTKLLNSSK------ 791 (949)
Q Consensus 719 spdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~-~~~~g~i~~~~~~~------ 791 (949)
+..++.++|+|.+ |.|||.....+...... .-+.+.++. |+|....++. +..|+.+.++|...
T Consensus 156 ~~~~~~FaTcGe~--i~IWD~~R~~Pv~smsw-G~Dti~svk-------fNpvETsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 156 HRKNSVFATCGEQ--IDIWDEQRDNPVSSMSW-GADSISSVK-------FNPVETSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ccccccccccCce--eeecccccCCccceeec-CCCceeEEe-------cCCCcchheeeeccCCceEEEecccCCccce
Confidence 7778889999875 99999876432111111 133455555 8887765554 44889999998532
Q ss_pred -----CceEEEEeCC--EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE
Q 002234 792 -----YPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 864 (949)
Q Consensus 792 -----~v~~v~~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw 864 (949)
....++|+|. .+++|+.|..++.||++.-.... ....+|.+.|.+++|+|.|.-++++|.| ++|+||
T Consensus 226 Vi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-----~v~~dhvsAV~dVdfsptG~EfvsgsyD-ksIRIf 299 (433)
T KOG0268|consen 226 VILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-----NVHKDHVSAVMDVDFSPTGQEFVSGSYD-KSIRIF 299 (433)
T ss_pred eeeeccccceecCccccceeeccccccceehhhhhhcccc-----hhhcccceeEEEeccCCCcchhcccccc-ceEEEe
Confidence 2356677773 38899999999999998755432 5667899999999999999999999999 599999
Q ss_pred ECCCCeeEEeec--CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEE
Q 002234 865 STSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE 912 (949)
Q Consensus 865 d~~~~~~~~~~~--~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~ 912 (949)
..+.+.....+. --..|.++.||-| ++++||+|+.|++|...-.+.+.
T Consensus 300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 998876654443 2467999999988 99999999999999976555443
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=4.2e-19 Score=187.85 Aligned_cols=269 Identities=16% Similarity=0.227 Sum_probs=211.8
Q ss_pred cccccccccEEEEecCCCCeEEEecCCc-----ee-eec-CCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHREL-----VH-VDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~~-----~~-~~~-~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
...++.....++|||. |.|+|||+... +. ... ....-|.++..+|| .|++|++-.++.|||+.....+.-
T Consensus 424 AvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik 502 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK 502 (705)
T ss_pred EEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchh
Confidence 4445556667777765 77999999732 11 111 23567888888887 899999999999999987744444
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
.++..-.-....++.+||.+..+++..||.|.|||+.+.. .......|.+.+.++. +++||.
T Consensus 503 aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascId-------is~dGt---------- 564 (705)
T KOG0639|consen 503 AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCID-------ISKDGT---------- 564 (705)
T ss_pred hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEE-------ecCCCc----------
Confidence 5555555678889999999999999999999999999863 3444455667777776 666665
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+|.+|+-|++|+.||++++...... .....|.++...|++.+++.|-..+ .+.+
T Consensus 565 ------------------klWTGGlDntvRcWDlregrqlqqh-------dF~SQIfSLg~cP~~dWlavGMens-~vev 618 (705)
T KOG0639|consen 565 ------------------KLWTGGLDNTVRCWDLREGRQLQQH-------DFSSQIFSLGYCPTGDWLAVGMENS-NVEV 618 (705)
T ss_pred ------------------eeecCCCccceeehhhhhhhhhhhh-------hhhhhheecccCCCccceeeecccC-cEEE
Confidence 4899999999999999999765321 2246799999999999999987775 7777
Q ss_pred EECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 864 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 864 wd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
-........+.-.|.+-|.++.|.+. ++++.+.|+.+..|...-|..+...+ ..+.|.++.+|.|.++++||+.|.
T Consensus 619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCc
Confidence 77765555555558899999999876 89999999999999999998777764 567899999999999999999999
Q ss_pred cEEEEeC
Q 002234 942 RIQAWGL 948 (949)
Q Consensus 942 ~I~iWdl 948 (949)
.-.||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 9888875
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.1e-19 Score=174.82 Aligned_cols=220 Identities=17% Similarity=0.277 Sum_probs=169.3
Q ss_pred eeecCCCCceEEE--EEeCCEEEEEeCCCcEEEEecCCCce-eeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcEEE
Q 002234 662 HVDSSENGKVLSI--ACFRDKIFSGHSDGTIKVWTGRGSIL-HLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 736 (949)
Q Consensus 662 ~~~~~h~~~V~~l--~~s~d~lasgs~Dg~I~vWd~~t~~~-~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~v 736 (949)
.+...|.+.|..+ .|...+|+|++.|++|+|+.+..+.. .++.++.||.++|+.++|.. .|.+|+|+|.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 3456788877664 56678999999999999999987643 68899999999999999965 7999999999999999
Q ss_pred EECCCCeeEEEE-eecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEE
Q 002234 737 WSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 815 (949)
Q Consensus 737 Wd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iw 815 (949)
|.-.+|...... ...|...|+++. |.|.+..+ .|++++.||.|.+.
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~-------wapheygl--------------------------~LacasSDG~vsvl 131 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVA-------WAPHEYGL--------------------------LLACASSDGKVSVL 131 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeec-------ccccccce--------------------------EEEEeeCCCcEEEE
Confidence 999988533222 235677788877 66666543 38999999999999
Q ss_pred ECCCC-ceeeeecccccccCCCCCEEEEEEeCCc---eEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEE
Q 002234 816 DLATG-TFATIQTGHRKLLGKANPVHALQVHNGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELV 891 (949)
Q Consensus 816 d~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l 891 (949)
+.++. .... .+....|...|++++|.|.. ..+-.+.. .. ...+
T Consensus 132 ~~~~~g~w~t----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~-------------~~----------------~krl 178 (299)
T KOG1332|consen 132 TYDSSGGWTT----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPA-------------AK----------------VKRL 178 (299)
T ss_pred EEcCCCCccc----hhhhhccccccceeeecCcCCCccccccCcc-------------cc----------------ccee
Confidence 88765 2211 14567899999999998752 21111100 00 2268
Q ss_pred EEEECCCeEEEEECCCCc--EEEEeccccccceeEEEEeCCC----CEEEEEeCCCcEEEEeC
Q 002234 892 YLGCKGGTVEIWDQKRQI--RIETLQTGTSGKVQCMALDDNE----EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~~~--~~~~l~~~h~~~I~~l~~spdg----~~L~sgs~Dg~I~iWdl 948 (949)
++|+.|+.|+||+..++. .-.++ .+|.+.|+.++|.|.- .+|++++.||+|.||-.
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 999999999999998764 33445 5999999999999964 58999999999999964
No 137
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.8e-17 Score=159.05 Aligned_cols=232 Identities=22% Similarity=0.305 Sum_probs=188.8
Q ss_pred eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC------CCC--------eeEEEEeecCCCceeeeeeccce
Q 002234 700 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI------GNE--------EIHCVQVHDIKDQIQNLAVSNSI 765 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~------~~~--------~~~~~~~~~~~~~v~~l~~~~~~ 765 (949)
+.++..+ ..+..|.+++|+|.|.+.+.||..++.+|-.. +.+ ...+.....|++.|++..
T Consensus 23 f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~----- 96 (350)
T KOG0641|consen 23 FEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA----- 96 (350)
T ss_pred eEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE-----
Confidence 3455555 46778999999999999999999999998643 221 134455567888999887
Q ss_pred EEEEeCCCEEEEEEecCeEEEec-----------------CCCCceEEEEeC-----CEE-EE-EECCCcEEEEECCCCc
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLN-----------------SSKYPKCLALVQ-----GKV-YC-GCQDGAIQEIDLATGT 821 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~-----------------~~~~v~~v~~~~-----~~l-~s-gs~Dg~I~iwd~~~~~ 821 (949)
|+|+|..+++++.|.++++.. |.+.|+.++|-+ +.+ ++ |..|..|++-|..+|+
T Consensus 97 --ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 97 --WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred --ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 999999999999999998753 456788898864 333 33 3456778888888888
Q ss_pred eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---C-----CCcEEEEEEcCC--EE
Q 002234 822 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T-----LSEVRAMVVSSE--LV 891 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~-----~~~v~~l~~s~d--~l 891 (949)
.. ..+.+|.+-|.++ ++-++-.+++++.|. +|++||++-..++.++. | .+.|.++++.|. .+
T Consensus 175 ~~------~a~sghtghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 175 GF------HALSGHTGHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred cc------eeecCCcccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 76 5677888888776 344567789999884 99999999999988876 2 256889999887 78
Q ss_pred EEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 892 YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++|-.|....+||++.+..++.+. .|+..|.++.|||...|+.+++.|..|++=|+
T Consensus 247 ~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred eeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 999999999999999999999994 89999999999999999999999999999876
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=1.9e-18 Score=172.14 Aligned_cols=219 Identities=25% Similarity=0.394 Sum_probs=169.8
Q ss_pred eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc----------eeee---EEecccCCCEEEEEEec-CCCE
Q 002234 662 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI----------LHLI---QQIREHTKAVTGLAILQ-SGEM 724 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~----------~~~i---~~l~~H~~~V~~v~fsp-dg~~ 724 (949)
.....|.|.|.++...+- +++||+.||.|.|||++... ..++ ..-.+|.-.|.++.|-| |..+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 455789999999999883 99999999999999997541 1121 11246888999999999 7779
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 725 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 725 L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
+.|+|.|.+++|||+++- +....+..++.|++-+ ++|- +.++-.++
T Consensus 117 FtssSFDhtlKVWDtnTl--Q~a~~F~me~~VYsha-------mSp~-------------------------a~sHcLiA 162 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTL--QEAVDFKMEGKVYSHA-------MSPM-------------------------AMSHCLIA 162 (397)
T ss_pred eecccccceEEEeecccc--eeeEEeecCceeehhh-------cChh-------------------------hhcceEEE
Confidence 999999999999999985 4455555566666555 3332 11223488
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE-EEEEECCCCEEEEEECCCCeeEEeecCCCcEEE
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRA 883 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~ 883 (949)
+|..|-.|++-|+.+|... ..+.||.+.|.++.|+|...+ +++++.|| .|++||++.-
T Consensus 163 ~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg-~irlWDiRra-------------- 221 (397)
T KOG4283|consen 163 AGTRDVQVRLCDIASGSFS------HTLSGHRDGVLAVEWSPSSEWVLATGSADG-AIRLWDIRRA-------------- 221 (397)
T ss_pred EecCCCcEEEEeccCCcce------eeeccccCceEEEEeccCceeEEEecCCCc-eEEEEEeecc--------------
Confidence 9999999999999999987 678899999999999987665 56777776 9999999742
Q ss_pred EEEcCCEEEEEECCCeEEEEECCCCcEEEEe--ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 884 MVVSSELVYLGCKGGTVEIWDQKRQIRIETL--QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 884 l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l--~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|..++.|..+++....+ ...|.+.|.+++|+.||.++++++.|.++++|+.
T Consensus 222 -------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 222 -------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred -------------cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 234555665554422222 3579999999999999999999999999999985
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=2.7e-17 Score=181.23 Aligned_cols=322 Identities=19% Similarity=0.209 Sum_probs=229.5
Q ss_pred HHHHHHhhHhhhccccccccccEEEEecCCCCeEEEecCCc--ee-------eecCCCCceEEEEEeCC--EEEEEeCCC
Q 002234 620 MKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHREL--VH-------VDSSENGKVLSIACFRD--KIFSGHSDG 688 (949)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~--~~-------~~~~h~~~V~~l~~s~d--~lasgs~Dg 688 (949)
...++.+|...+.....++++..|++++.|+++.+|.+.+. +. ...|..+..++..|+|+ .+++-+.-|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 44566788888888999999999999999999999998742 21 12244667899999997 789999999
Q ss_pred cEEEEecC-CCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe--e-EEEEeecCCCceeeeeeccc
Q 002234 689 TIKVWTGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--I-HCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 689 ~I~vWd~~-t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~--~-~~~~~~~~~~~v~~l~~~~~ 764 (949)
-.++|... ...+.....+.||.+.|..++|+|.|.+|+|+|.|.|-|++-.-..+ . +.-...-|...+.++.+-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 99999833 33445566678999999999999999999999999999998655222 1 11111224444555553321
Q ss_pred eEEE-----------------------------------EeCCCEEEEEE-----------ecC----------------
Q 002234 765 ILCF-----------------------------------IPQGAGIKVHL-----------RNG---------------- 782 (949)
Q Consensus 765 ~~~f-----------------------------------sp~g~~l~~~~-----------~~g---------------- 782 (949)
...| .|+|-.+-... .+|
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 1111 11111100000 000
Q ss_pred -------------------eEEEecCCCCceEEEEeC--CEEEEEECCC-----cEEEEECCCCceeeeecccccccCCC
Q 002234 783 -------------------KTKLLNSSKYPKCLALVQ--GKVYCGCQDG-----AIQEIDLATGTFATIQTGHRKLLGKA 836 (949)
Q Consensus 783 -------------------~i~~~~~~~~v~~v~~~~--~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~ 836 (949)
.-++|.|...|.+++.++ +.+++++... .|++|+..+-... ..+.+|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~------~~L~~Hs 572 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV------QELEGHS 572 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh------heecccc
Confidence 002233455688999885 4577776643 4889998776665 5678899
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee-EEe---ec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC-
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM-VGS---LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ- 908 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~-~~~---~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~- 908 (949)
-.|+.++|+||+.|+++.|.| +++.+|....... -.. .+ |...|+...|+|+ +++++|.|.+|+||.....
T Consensus 573 LTVT~l~FSpdg~~LLsvsRD-Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRD-RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEEEEEECCCCcEEEEeecC-ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999999999999999999 6999998754321 111 23 7778999999999 7999999999999998877
Q ss_pred -cEEEEe-ccccccceeEEEEeCC-----CCEEEEEeCCCcEEEEeC
Q 002234 909 -IRIETL-QTGTSGKVQCMALDDN-----EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 909 -~~~~~l-~~~h~~~I~~l~~spd-----g~~L~sgs~Dg~I~iWdl 948 (949)
+.+..+ ...++..|+.++|.|- +..++.|-..|.|.+|..
T Consensus 652 d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 652 DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 433321 1247789999999762 337788899999999974
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.9e-17 Score=166.51 Aligned_cols=260 Identities=15% Similarity=0.241 Sum_probs=183.4
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecC------CceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEEEec
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTG 695 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~vWd~ 695 (949)
.|..+++...+.|+|.++++++.|++|+|||.+ .+......|.+.|..|.|.+ +.+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 455677888999999999999999999999964 24455678999999999976 38999999999999965
Q ss_pred C-------CCceeeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceE
Q 002234 696 R-------GSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 766 (949)
Q Consensus 696 ~-------t~~~~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 766 (949)
. +.++....++....+.|+.|.|.| -|-.|++++.||++|||+.-..- -+........+..+
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNV------- 161 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhc-------
Confidence 2 224556677888889999999999 47899999999999999876531 11111111111111
Q ss_pred EEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC-----CEEEEEECC-----CcEEEEECCCCceeeeecccccccCCC
Q 002234 767 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GKVYCGCQD-----GAIQEIDLATGTFATIQTGHRKLLGKA 836 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~-----~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~ 836 (949)
..|.|+ +.....|+.+++ ..|++|+.+ +.++||....+...... ...+.+|.
T Consensus 162 -~~pp~~---------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--va~L~d~~ 223 (361)
T KOG2445|consen 162 -IDPPGK---------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--VAELPDHT 223 (361)
T ss_pred -cCCccc---------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee--ehhcCCCC
Confidence 112221 122344555543 347777766 47888876654422111 14667999
Q ss_pred CCEEEEEEeCC----ceEEEEEECCCCEEEEEECCCC--------------------eeEEeec-CCCcEEEEEEcCC--
Q 002234 837 NPVHALQVHNG----LVYTASTSLDGAAVKMWSTSNY--------------------NMVGSLP-TLSEVRAMVVSSE-- 889 (949)
Q Consensus 837 ~~V~~l~~~~~----~~~l~s~s~Dg~~I~iwd~~~~--------------------~~~~~~~-~~~~v~~l~~s~d-- 889 (949)
.+|++++|.|+ ...+++++.|| |+||.+... +.+..+. |.+.|+.+.|+-.
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee
Confidence 99999999875 45788888886 999998731 1223333 6789999999755
Q ss_pred EEEEEECCCeEEEEECCC---CcEEEEe
Q 002234 890 LVYLGCKGGTVEIWDQKR---QIRIETL 914 (949)
Q Consensus 890 ~l~sgs~dg~I~vwd~~~---~~~~~~l 914 (949)
.+.+.+.||.|++|...- .++...+
T Consensus 302 iLsStGdDG~VRLWkany~n~~kC~sv~ 329 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYNNLWKCTSVL 329 (361)
T ss_pred EEeecCCCceeeehhhhhhhhheeeeEE
Confidence 788889999999997542 3444444
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.8e-17 Score=181.02 Aligned_cols=237 Identities=20% Similarity=0.357 Sum_probs=190.9
Q ss_pred CCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEeccc-CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 002234 668 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H-~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
..+|++++|+.+ .||.+-.||.|-+|++..+- -+...+.++ ...|-+++|+ +|..|.|.+.+|+|.-||+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk- 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK- 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc-
Confidence 578999999985 99999999999999999863 455666666 4579999999 55678899999999999999985
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
.........+.+++++ .+|.+. .+++||.||.+..++...+....
T Consensus 102 ~~~~~d~~gg~IWsia-------i~p~~~----------------------------~l~IgcddGvl~~~s~~p~~I~~ 146 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIA-------INPENT----------------------------ILAIGCDDGVLYDFSIGPDKITY 146 (691)
T ss_pred eeEEecCCCcceeEEE-------eCCccc----------------------------eEEeecCCceEEEEecCCceEEE
Confidence 2333333455666665 444433 48889999988888877777654
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---------CCCcEEEEEEcCC-EEEEE
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------TLSEVRAMVVSSE-LVYLG 894 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---------~~~~v~~l~~s~d-~l~sg 894 (949)
. +.+....+.|.++.|++++..+++|+.|| .|++||..++..+.... ...-|+++.|-.+ .+++|
T Consensus 147 ~----r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg 221 (691)
T KOG2048|consen 147 K----RSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG 221 (691)
T ss_pred E----eecccccceEEEEEecCCccEEEecccCc-eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe
Confidence 3 44555678999999999999999999997 99999999988776222 1234777777544 99999
Q ss_pred ECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 895 CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 895 s~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...|+|.+||...+.+++.+. .|...|.+++.++++++++++|.|++|.-+..
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred cCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 999999999999999999994 89999999999999999999999999877653
No 142
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=170.43 Aligned_cols=279 Identities=15% Similarity=0.217 Sum_probs=200.4
Q ss_pred CceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
+...++++|.+.|+++.|-.+ +|.+|..-|.|++|++.+. +....+. .|...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 345677799999999999886 9999999999999999998 5666666 57888999988887 57889999999999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEE---EEEE---------ec----CeEEEec-----CCCCceE
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI---KVHL---------RN----GKTKLLN-----SSKYPKC 795 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l---~~~~---------~~----g~i~~~~-----~~~~v~~ 795 (949)
|++..+....+.. -.++++.|.... +.++++.. .... .| -.+.+-+ ..+.+.|
T Consensus 82 w~ia~s~~i~i~S----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 82 WTIAYSAFISIHS----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred EEccCcceEEEee----eeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9998864222222 233333322211 12222111 1100 00 1111211 1234566
Q ss_pred EEEeC---C--EEEEEECCCcEEEEECCCCceeeeecc----cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 796 LALVQ---G--KVYCGCQDGAIQEIDLATGTFATIQTG----HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 796 v~~~~---~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
..... . .+++|..+|.+.+||+.++..+..+.. ......|..+|.++.+.+....=++++.++ .+..|++
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~~~Sl 234 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLVMYSL 234 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cceeeee
Confidence 65331 2 278899999999999999854432221 134557899999999987655556777776 8889988
Q ss_pred CCC--eeE--Eeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 867 SNY--NMV--GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 867 ~~~--~~~--~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
... .+. ..+. .+..+..+.+-|| .+++++.|+.||||+.++..++..++ .|++.|++++|+||...+|+++.
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccC
Confidence 643 222 1122 3456778888888 89999999999999999999999994 89999999999999999999999
Q ss_pred CCcEEEEeC
Q 002234 940 DGRIQAWGL 948 (949)
Q Consensus 940 Dg~I~iWdl 948 (949)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999996
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.9e-18 Score=170.97 Aligned_cols=209 Identities=19% Similarity=0.303 Sum_probs=152.5
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
..+++|.+.|++++|+.||++|+|++.|++|++|+++.-. -+++...-.-+ .+..+.|+||-+.+++...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-------hpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-------HPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-------CceEEEECCCcceEEEEEc
Confidence 4578999999999999999999999999999999998732 11111111111 2334558888876544332
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce---eee---ecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF---ATI---QTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~---~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
...++++|.+...+. ... ...+....-|.-++-.+-.-.++.|++++
T Consensus 153 ---------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa 205 (420)
T KOG2096|consen 153 ---------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA 205 (420)
T ss_pred ---------------------------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe
Confidence 334555555432211 100 00011123466677778888999999999
Q ss_pred ECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECC---CC-----cEEEEecccccccee
Q 002234 855 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK---RQ-----IRIETLQTGTSGKVQ 923 (949)
Q Consensus 855 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~---~~-----~~~~~l~~~h~~~I~ 923 (949)
+.|. .|.+|+++ |+.+.++. ....-+..++||+ ++++++..-.|+||.+- .| ..+..+ .||...|.
T Consensus 206 s~dt-~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~ 282 (420)
T KOG2096|consen 206 SLDT-KICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVL 282 (420)
T ss_pred cCCC-cEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhhee
Confidence 9985 99999998 88888887 4566677889999 88889999999999863 22 245667 49999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 924 CMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 924 ~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
..+|||++..++|.+.||+++|||++
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999999999999999999999974
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=4e-18 Score=180.44 Aligned_cols=247 Identities=14% Similarity=0.158 Sum_probs=192.5
Q ss_pred EEEEecCCCCeEEEecCCc----eeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEE
Q 002234 642 KVLSNGHDSSADFWNHREL----VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 715 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~ 715 (949)
.+++.+.|..+++|.-... ..+.....+.-.|++... -++++|+..|+|+|||+... .+.+.+++|++.|++
T Consensus 49 vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 49 VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTY 126 (673)
T ss_pred EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEE
Confidence 4455677889999976522 112222222344555444 39999999999999999976 788889999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceE
Q 002234 716 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 795 (949)
Q Consensus 716 v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~ 795 (949)
|.++....+|++++..|-|.|-.+.++.......++....|.-+. |+|..+.
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~-------ys~skr~--------------------- 178 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR-------YSPSKRF--------------------- 178 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee-------cccccce---------------------
Confidence 999999999999999999999999987533333333334444444 5554443
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEe
Q 002234 796 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGS 874 (949)
Q Consensus 796 v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~ 874 (949)
.|.+++++|.|.+||+.....+. .-...|..|...|+|+| +..++++.+.| +.|.+||++.......
T Consensus 179 ------lL~~asd~G~VtlwDv~g~sp~~-----~~~~~HsAP~~gicfspsne~l~vsVG~D-kki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 179 ------LLSIASDKGAVTLWDVQGMSPIF-----HASEAHSAPCRGICFSPSNEALLVSVGYD-KKINIYDIRSQASTDR 246 (673)
T ss_pred ------eeEeeccCCeEEEEeccCCCccc-----chhhhccCCcCcceecCCccceEEEeccc-ceEEEeecccccccce
Confidence 37889999999999998776653 34467999999999997 56677888888 5999999999888888
Q ss_pred ecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc-EEEEeccccccceeEEEEeCCC
Q 002234 875 LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNE 931 (949)
Q Consensus 875 ~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spdg 931 (949)
+....+...++|+++ ++++|+..|.|..||++..+ ++..+ ..|...|++++|-|.-
T Consensus 247 l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 247 LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecccceeEEEeeecc
Confidence 888889999999999 78999999999999998755 55666 6899999999997753
No 145
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.78 E-value=1.8e-19 Score=150.15 Aligned_cols=72 Identities=44% Similarity=0.828 Sum_probs=62.9
Q ss_pred CCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCC
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
+|++|.||||+++|+|||+++|||||||.||++|+..++..||.|+++++..+++ ||..|++.|+.|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~-pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI-PNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE-E-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce-ECHHHHHHHHHHHHHcc
Confidence 5899999999999999999999999999999999999777999999999999996 99999999999999986
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=178.71 Aligned_cols=237 Identities=19% Similarity=0.269 Sum_probs=179.7
Q ss_pred hccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC-------CCc
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------GSI 699 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~-------t~~ 699 (949)
+...+..+.|.+++.|+..|.|.+|.+.+ .+.++..|-..|+|+.|+.| +|+|||.||.|.+|++. +..
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 44556667888999888999999999984 56778899999999999997 99999999999999764 224
Q ss_pred eeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEE
Q 002234 700 LHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 777 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~ 777 (949)
..+++.|.+|+-+|+++...+. ..+++|+|.|.++++||+..|. .+........+.++. ..|.++.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~fp~si~av~-------lDpae~~--- 231 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTITFPSSIKAVA-------LDPAERV--- 231 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEecCCcceeEE-------EcccccE---
Confidence 4788999999999999998875 4589999999999999999984 333333455555555 5555554
Q ss_pred EEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc--ee----e----eecccccccCCCC--CEEEEEEe
Q 002234 778 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT--FA----T----IQTGHRKLLGKAN--PVHALQVH 845 (949)
Q Consensus 778 ~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~--~~----~----~~~~~~~~~~h~~--~V~~l~~~ 845 (949)
+++|+.+|.|.+.++.+-. .. + .......+.||.+ +|+|++++
T Consensus 232 -------------------------~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 232 -------------------------VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred -------------------------EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 6666667766666554322 00 0 0001145678888 99999999
Q ss_pred CCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcC---CEEEEEECCCeEEEEEC
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS---ELVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~---d~l~sgs~dg~I~vwd~ 905 (949)
-|+..+++|+.|| .++|||+.+.++++++. ..++|+.+.+.| ..+..-...-.+-.|+.
T Consensus 287 ~DgtlLlSGd~dg-~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 287 TDGTLLLSGDEDG-KVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cCccEEEeeCCCC-CEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999999997 99999999999999998 678999999844 33333333334444443
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=171.16 Aligned_cols=244 Identities=16% Similarity=0.218 Sum_probs=183.5
Q ss_pred eecCCCCceEEEEEeC--C--EEEEEeCCCcEEEEecCC--------------CceeeeEEecccCCCEEEEEEec-CCC
Q 002234 663 VDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRG--------------SILHLIQQIREHTKAVTGLAILQ-SGE 723 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~--d--~lasgs~Dg~I~vWd~~t--------------~~~~~i~~l~~H~~~V~~v~fsp-dg~ 723 (949)
...+|.+.+..+.-++ + +.++-+..|.|+|||+.. .+.+++.++.+|.+.=+.++||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 3456777777777665 3 778888999999999852 13468889999999999999999 233
Q ss_pred EEEEEeCCCcEEEEECCCCeeEE--EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 724 MLYSGSLDKTARVWSIGNEEIHC--VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 724 ~L~Sgs~Dg~I~vWd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
.|+||.--+.|++|...+|.... .....|...|..+. |+|..+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLq-------WSptE~~--------------------------- 271 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQ-------WSPTEDG--------------------------- 271 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhc-------cCCccCc---------------------------
Confidence 58888888899999999886322 22334566666666 6666554
Q ss_pred EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC---CeeEEeec-C
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN---YNMVGSLP-T 877 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~---~~~~~~~~-~ 877 (949)
.+++|+.||+|+|||++.+..... .....|...|+.|.|+....++++|+.|| +++|||+++ ++++..|+ |
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~lLasG~DdG-t~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREPLLASGGDDG-TLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred eEEeeecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcceeeecCCCc-eEEEEEhhhccCCCcceeEEec
Confidence 489999999999999999843221 12367889999999998888999998886 999999986 56778888 8
Q ss_pred CCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcE--------EEE-------eccccc--cceeEEEEeCCC-CEEEE
Q 002234 878 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIR--------IET-------LQTGTS--GKVQCMALDDNE-EFLVI 936 (949)
Q Consensus 878 ~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~--------~~~-------l~~~h~--~~I~~l~~spdg-~~L~s 936 (949)
..+|+++.|+|. .+++++.|+.|.+||+..-.- ... +..-|. ..|..+.|++.- .++++
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 899999999986 788999999999999853210 000 112243 368889999865 47778
Q ss_pred EeCCCcEEEE
Q 002234 937 GTSDGRIQAW 946 (949)
Q Consensus 937 gs~Dg~I~iW 946 (949)
.+.||- .||
T Consensus 427 Ta~dGf-nVf 435 (440)
T KOG0302|consen 427 TAIDGF-NVF 435 (440)
T ss_pred ecccce-eEE
Confidence 888874 444
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=2.9e-16 Score=172.17 Aligned_cols=254 Identities=11% Similarity=0.067 Sum_probs=175.9
Q ss_pred ccccccccEE-EEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EE-EEEeCCCcEEEEecCCCceeeeEEec
Q 002234 634 SPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 634 ~~~~~~~~~l-~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~l-asgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
..+.+++..+ ++++.++.|++||..+ ....+..+. .+..++|+|+ .+ ++++.|+.|++||+.++ +.+..+.
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~--~~~~~~~ 112 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR--KVLAEIP 112 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC--eEEeEee
Confidence 4456677766 5677899999999874 233333333 3567899986 45 45567899999999987 5666665
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDK-TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg-~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
. ...+.+++|+|+|+++++++.++ .+.+||..+++.... .........+ .|+|+|+.+
T Consensus 113 ~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~-------~~s~dg~~l----------- 171 (300)
T TIGR03866 113 V-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN--VLVDQRPRFA-------EFTADGKEL----------- 171 (300)
T ss_pred C-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE--EEcCCCccEE-------EECCCCCEE-----------
Confidence 3 34568899999999999998875 467789887643221 1112222333 378887752
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc-cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR-KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
++++..++.|++||+.+++....+.... ...........+.|+|++.++..+..++..+.+||
T Consensus 172 ----------------~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 172 ----------------WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred ----------------EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 2344568999999999887654332110 00001122346889999887554433334899999
Q ss_pred CCCCeeEEeecCCCcEEEEEEcCC--EEEEE-ECCCeEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 866 TSNYNMVGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 866 ~~~~~~~~~~~~~~~v~~l~~s~d--~l~sg-s~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
..+++....+.+...+.+++|+|+ +++++ ..+|.|.+||..+++.+..+.. ....+.++|+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 999988877766678999999998 67765 4689999999999999999963 34568888875
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=171.86 Aligned_cols=218 Identities=18% Similarity=0.267 Sum_probs=160.9
Q ss_pred EecccCCCEEEEEEecCC--CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 705 QIREHTKAVTGLAILQSG--EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg--~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
..-+|.+.++.+..++-| .+.++=+..|.|+|||+...- .++.... ..+.... ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-~~l~~~~--~~~~~s~-------------------~~P 203 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-NALSEPG--LEVKDSE-------------------FRP 203 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-hhhcCcc--ccccccc-------------------cCc
Confidence 334688888888888755 455566678999999987531 1111110 0000000 001
Q ss_pred eEEEecCCCCceEEEEeC---CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCC
Q 002234 783 KTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG 858 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg 858 (949)
..++-.|.+.-..+.|++ |.+++|..-+.|++|...+|....- ...+.+|...|-.++|+| ....++++|.||
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeeccCceeec---CccccccccchhhhccCCccCceEEeeecCc
Confidence 111112334445566665 5689999999999999999876532 256788999999999997 456789999997
Q ss_pred CEEEEEECCCC---eeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCC---CcEEEEeccccccceeEEEEeCC
Q 002234 859 AAVKMWSTSNY---NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR---QIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 859 ~~I~iwd~~~~---~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~---~~~~~~l~~~h~~~I~~l~~spd 930 (949)
+|+|||++.+ .++.+-.|.+.|+.+.|+.+ +|++|+.||+++|||+++ ++++..++ .|..+|+++.|+|.
T Consensus 281 -sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 281 -SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPH 358 (440)
T ss_pred -eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccc
Confidence 9999999988 45555458899999999987 799999999999999875 56888884 89999999999985
Q ss_pred C-CEEEEEeCCCcEEEEeCC
Q 002234 931 E-EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 931 g-~~L~sgs~Dg~I~iWdl~ 949 (949)
. ..|+++|.|..|.+||++
T Consensus 359 e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cCceEEeccCCCcEEEEEee
Confidence 4 678888999999999984
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=3.2e-17 Score=166.16 Aligned_cols=268 Identities=16% Similarity=0.273 Sum_probs=191.4
Q ss_pred ccEEEEecCCCCeEEEecCC-----ceee--ecCCCCceEEEEEeC-----C-EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 640 MVKVLSNGHDSSADFWNHRE-----LVHV--DSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~-----~~~~--~~~h~~~V~~l~~s~-----d-~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
...+++.|.+ .+.+|.... .++. ...|......++|+- + ++|.|+.-|.|+|.|+.++ ++...+
T Consensus 55 ~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~ 131 (385)
T KOG1034|consen 55 PQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNY 131 (385)
T ss_pred CceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccce
Confidence 4455555543 566777652 1121 224778888888874 3 8999999999999999999 899999
Q ss_pred cccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEe--ecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 707 REHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 707 ~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
.+|...|+.+.|+|+ .++++++|.|.+||+|+++++....+.. ..|.+.|.++. |+++|..
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD-------~~~~gd~--------- 195 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD-------FSLDGDR--------- 195 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE-------EcCCCCe---------
Confidence 999999999999995 6899999999999999999984322222 25788888888 8888875
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeee----------------------cccccccCCCCCEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ----------------------TGHRKLLGKANPVHA 841 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~----------------------~~~~~~~~h~~~V~~ 841 (949)
+++++.|.++++|++...+..... .......-|...|.|
T Consensus 196 -------------------i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 196 -------------------IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred -------------------eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 677777777777777633221100 000122346677777
Q ss_pred EEEeCCceEEEEEECCCCEEEEEECCC-Ce-------------eEEeec-CCCcEEEEEEcCC----EEEEEECCCeEEE
Q 002234 842 LQVHNGLVYTASTSLDGAAVKMWSTSN-YN-------------MVGSLP-TLSEVRAMVVSSE----LVYLGCKGGTVEI 902 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg~~I~iwd~~~-~~-------------~~~~~~-~~~~v~~l~~s~d----~l~sgs~dg~I~v 902 (949)
+.|.. .++++-|-++ .|..|.... .+ ....+. ....++-+.|+-| .++.|...|.|++
T Consensus 257 vrw~g--d~ilSkscen-aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 257 VRWFG--DFILSKSCEN-AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHh--hheeecccCc-eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 77765 5667777676 999998721 11 122333 2445666666554 7999999999999
Q ss_pred EECCCCcEE--EEec-cccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 903 WDQKRQIRI--ETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 903 wd~~~~~~~--~~l~-~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
||++...+. .++. ......|...+||.||.+|+..++||+|.-||-
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999876652 2221 112347999999999999999999999999983
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.5e-17 Score=173.25 Aligned_cols=268 Identities=19% Similarity=0.238 Sum_probs=183.3
Q ss_pred ccEEEEecCC---CCeEEEecCCc-eeeecCCC----CceEEEEEeC---------CEEEEEeCCCcEEEEecCCCc-ee
Q 002234 640 MVKVLSNGHD---SSADFWNHREL-VHVDSSEN----GKVLSIACFR---------DKIFSGHSDGTIKVWTGRGSI-LH 701 (949)
Q Consensus 640 ~~~l~s~s~d---g~I~vWd~~~~-~~~~~~h~----~~V~~l~~s~---------d~lasgs~Dg~I~vWd~~t~~-~~ 701 (949)
.+.++.+-.+ ..+.+|-+.+. ...+..|. ....|+.|.. |++|.|+.|..|.|||+.-.. ..
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~ 216 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVL 216 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccc
Confidence 3444444332 34455555422 23333342 3345666642 499999999999999986220 01
Q ss_pred eeEE------------------ecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeec
Q 002234 702 LIQQ------------------IREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 702 ~i~~------------------l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~ 762 (949)
+..+ -.+|++.|.+++|+.+ .+.|+|||.|.||++||+.++++..... .|.+.|.++.
T Consensus 217 P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~-- 293 (463)
T KOG0270|consen 217 PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLE-- 293 (463)
T ss_pred cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEE--
Confidence 1111 2379999999999884 6789999999999999999996333222 3566777776
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
|.|... ..+++|+.|++|.++|.+..... .......+.|-.+
T Consensus 294 -----wh~~~p---------------------------~~LLsGs~D~~V~l~D~R~~~~s------~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 294 -----WHPYEP---------------------------SVLLSGSYDGTVALKDCRDPSNS------GKEWKFDGEVEKV 335 (463)
T ss_pred -----ecCCCc---------------------------eEEEeccccceEEeeeccCcccc------CceEEeccceEEE
Confidence 444332 24899999999999999953322 1112234679999
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCC-eeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEec-c
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-T 916 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~-~ 916 (949)
+|++.....+.++.|+++++-+|+++. +++.+++ |..+|.++++++. ++++++.|++|++|++....+..... .
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence 998766555544555569999999975 8899988 8999999999854 89999999999999987544322110 0
Q ss_pred ccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 002234 917 GTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl 948 (949)
-.-+...|+++.|+- -+++.|+..+.++|||+
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeec
Confidence 112346677777765 46788888899999997
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=1.2e-16 Score=173.50 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=95.0
Q ss_pred CCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCe-------eEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEE
Q 002234 836 ANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYN-------MVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIW 903 (949)
Q Consensus 836 ~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~-------~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vw 903 (949)
...|+.+.|+| |...++.++.|| .|++|.+..+. +...+. |...|+++.|+|- .+++++.|.+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg-~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG-QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc-eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 35688999986 666778888786 99999987543 334455 7788999999984 89999999999999
Q ss_pred ECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 904 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 904 d~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
|+.+++....+ .+|.+.|.+++|||||+.++|.+.||+|++|+
T Consensus 706 Dl~~~~~~~~l-~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 706 DLANAKLYSRL-VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred ehhhhhhhhee-ccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99999988888 59999999999999999999999999999986
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8.7e-17 Score=164.08 Aligned_cols=270 Identities=15% Similarity=0.210 Sum_probs=194.1
Q ss_pred cEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEEEecCCCceeeeEEecccC-CCE
Q 002234 641 VKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAV 713 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V 713 (949)
+.++++-..|+|++||..+ ....+.+|...+..+.|.. +.+.+++.||+|++||+++........+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 6788999999999999985 7778889999999999865 49999999999999999987545566666776 567
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEECCCCee-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 714 TGLAILQSGEMLYSGSL----DKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~----Dg~I~vWd~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
.+++....++.+++|.. |-.|.+||++..+. .......|.+.|+++. |.|..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr-------FHP~~---------------- 177 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR-------FHPSD---------------- 177 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE-------ecCCC----------------
Confidence 77777767888888754 67899999998642 1222234566666666 55544
Q ss_pred CCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEECCCCEEEEEECC
Q 002234 789 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 789 ~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~I~iwd~~ 867 (949)
|+.|++||.||.|.+||+.....- ........|...|..+.|+.++ ..+.+-+..+ +..+|++.
T Consensus 178 -----------pnlLlSGSvDGLvnlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~E-tf~~~ele 242 (376)
T KOG1188|consen 178 -----------PNLLLSGSVDGLVNLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHME-TFAIYELE 242 (376)
T ss_pred -----------CCeEEeecccceEEeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccC-ceeEEEcc
Confidence 346999999999999999866321 1113445677889999998655 3455555665 89999999
Q ss_pred CCeeEEeecCC-------------Cc-EEEEEEcC-CEEEE-EECCCeEEEEECC------CCcEEEEeccccccceeEE
Q 002234 868 NYNMVGSLPTL-------------SE-VRAMVVSS-ELVYL-GCKGGTVEIWDQK------RQIRIETLQTGTSGKVQCM 925 (949)
Q Consensus 868 ~~~~~~~~~~~-------------~~-v~~l~~s~-d~l~s-gs~dg~I~vwd~~------~~~~~~~l~~~h~~~I~~l 925 (949)
.+.+...+... .. |.+..-.. +..+. |+..|...++-+. ..+.+..++.+|...|+++
T Consensus 243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 88866555421 11 11111111 13444 3334555555332 3456677776788899999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeC
Q 002234 926 ALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 926 ~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|...+.+++|||+||.+++|..
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhhcccceeeccCCCceEEEEec
Confidence 99989999999999999999973
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1e-17 Score=194.96 Aligned_cols=259 Identities=17% Similarity=0.207 Sum_probs=194.8
Q ss_pred cCCCCeEEEecCC--ce-----eeecCCCCceEEEEEeCC------EEEEEeCCCcEEEEecCC----CceeeeEEeccc
Q 002234 647 GHDSSADFWNHRE--LV-----HVDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRG----SILHLIQQIREH 709 (949)
Q Consensus 647 s~dg~I~vWd~~~--~~-----~~~~~h~~~V~~l~~s~d------~lasgs~Dg~I~vWd~~t----~~~~~i~~l~~H 709 (949)
+.+.++.+|.+.. .. ..-..-....+.++|.+. .|+.|.+||.|.+||... +....+.++..|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 5566777776651 11 111123567889999862 699999999999999864 344677788899
Q ss_pred CCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 710 TKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 710 ~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
++.|..+.|++. +++|++|+.||.|.|||++.-+. + |++.+. .
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t----------P------------~~~~~~--------------~ 159 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET----------P------------FTPGSQ--------------A 159 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCC----------C------------CCCCCC--------------C
Confidence 999999999995 56999999999999999987420 0 111110 1
Q ss_pred CCCCceEEEEeC---CEEEEEECCCcEEEEECCCCceeeeecccccccCCC--CCEEEEEEeCCc-eEEEEEECCC--CE
Q 002234 789 SSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA--NPVHALQVHNGL-VYTASTSLDG--AA 860 (949)
Q Consensus 789 ~~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~-~~l~s~s~Dg--~~ 860 (949)
....|.+++++. .-|++++.+|.+.|||++..+.+.. +..|. ..+..+.|||+. ..+++++.|+ -.
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~------ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK------LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc------cccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 233455555553 2388999999999999998876632 22222 357899999864 3455555554 38
Q ss_pred EEEEECCC-CeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EE
Q 002234 861 VKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FL 934 (949)
Q Consensus 861 I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L 934 (949)
|.+||++. ..+++.+. |...|.++.|++. ++++++.|+.|.+|+.++++.+..+. ...+++..+.|.|... .+
T Consensus 234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchh
Confidence 99999986 45677776 7899999999864 89999999999999999999999995 4667999999999775 78
Q ss_pred EEEeCCCcEEEEeC
Q 002234 935 VIGTSDGRIQAWGL 948 (949)
Q Consensus 935 ~sgs~Dg~I~iWdl 948 (949)
+.++-||.|.|+.+
T Consensus 313 A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 313 AAASFDGKISIYSL 326 (1049)
T ss_pred hhheeccceeeeee
Confidence 88899999999976
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=7.9e-17 Score=170.68 Aligned_cols=257 Identities=14% Similarity=0.183 Sum_probs=187.3
Q ss_pred EecCCCCeEEEecCC--ceeeecCC--CCceEEEEEeCC---EEEEEeCCCcEEEEecCC--CceeeeEEecccCCCEEE
Q 002234 645 SNGHDSSADFWNHRE--LVHVDSSE--NGKVLSIACFRD---KIFSGHSDGTIKVWTGRG--SILHLIQQIREHTKAVTG 715 (949)
Q Consensus 645 s~s~dg~I~vWd~~~--~~~~~~~h--~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t--~~~~~i~~l~~H~~~V~~ 715 (949)
.++...++++||... ....+..| ...+.++.|+.. .+++.+.|..|++|.-.. ++...+....+. .-.|
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~C 84 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFC 84 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHH
Confidence 444555789999872 22222222 234899999985 345556788999997653 333444444443 3344
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceE
Q 002234 716 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 795 (949)
Q Consensus 716 v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~ 795 (949)
++......++++|+..+.|+|||++.. +......+|.+.|.++.
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~----------------------------------- 128 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVD----------------------------------- 128 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEE-----------------------------------
Confidence 444445589999999999999999853 22222334445555444
Q ss_pred EEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE
Q 002234 796 LALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 873 (949)
Q Consensus 796 v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~ 873 (949)
++ +.+|++++..|.|.+..+.++.....+. .+....|.-+.|++..+++.+...|++.|.+||+....++.
T Consensus 129 --YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 129 --YNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT-----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred --ecCCcceeEEeccCCcEEEEecccCcccccee-----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 33 3468999999999999999887653322 12235577899998877766655555699999999888887
Q ss_pred eec--CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 874 SLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 874 ~~~--~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+. |..+...++|+|. .+++.+.|..|.+||........++.. ..+.+.++|+++|.+|+.|+..|.|..||+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCceEEEEec
Confidence 776 8889999999987 799999999999999998888887753 347999999999999999999999999997
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.3e-17 Score=169.87 Aligned_cols=276 Identities=12% Similarity=0.157 Sum_probs=210.9
Q ss_pred HHHHhhHhhhccccccc--cccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEE
Q 002234 622 DIMKGLRELRKYSPLAF--EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKV 692 (949)
Q Consensus 622 ~~~~~~~~~~~~~~~~~--~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~v 692 (949)
|+...+........++| .-..++++|.|+++++|.++ ..++...-...+|.+..|.|+ .+++++...-.+.
T Consensus 205 DaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 205 DANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred ccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 33333333334444555 44589999999999999887 344555556789999999996 8999999999999
Q ss_pred EecCCCceeeeEEecccC-CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeC
Q 002234 693 WTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 771 (949)
Q Consensus 693 Wd~~t~~~~~i~~l~~H~-~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~ 771 (949)
||+.+.+...+..+.++. ..+....++|++++|+..|..|.|.+-...+++ .+......+.|..+. |+.|
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e--li~s~KieG~v~~~~-------fsSd 355 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE--LITSFKIEGVVSDFT-------FSSD 355 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh--hhheeeeccEEeeEE-------EecC
Confidence 999999777777777775 467788899999999999999999999998874 444444567777776 9999
Q ss_pred CCEEEEEEecCeEEEecCCCC-----------c----eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC
Q 002234 772 GAGIKVHLRNGKTKLLNSSKY-----------P----KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 836 (949)
Q Consensus 772 g~~l~~~~~~g~i~~~~~~~~-----------v----~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 836 (949)
|+.+.+.+.+|.+.+|+.... + .|.+.++.++++|+..|.|.|||..+...-....+...+..-.
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 999999999999999985432 2 2233345689999999999999976533222222224445556
Q ss_pred CCEEEEEEeCCceEEEEEECCC-CEEEEEECCCCeeEEeecC----CCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 837 NPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLPT----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~~~----~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
..|+++.|+++...++.+|... ..+++-.+.+......++. -+.++|++|||+ +++.|..+|.+.+|.+.
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 7899999999999887776421 3899998888777777762 367999999997 89999999999999874
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=3.4e-16 Score=158.28 Aligned_cols=272 Identities=16% Similarity=0.199 Sum_probs=194.4
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCCc---------------eeeecCCCCceEEEEEeC---------CEEEEEe
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL---------------VHVDSSENGKVLSIACFR---------DKIFSGH 685 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~---------------~~~~~~h~~~V~~l~~s~---------d~lasgs 685 (949)
+-+.+..++||+-|++-+.|..+++|++..- ........+.|..-+|.+ +++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3445778999999999999999999997610 111112345677777763 2899999
Q ss_pred CCCcEEEEecCCCceeeeEEecccCCC---EEEEEEecCCCEEEEEeCCCcEEEEEC-CCCeeEEEEeecCCCceeeeee
Q 002234 686 SDGTIKVWTGRGSILHLIQQIREHTKA---VTGLAILQSGEMLYSGSLDKTARVWSI-GNEEIHCVQVHDIKDQIQNLAV 761 (949)
Q Consensus 686 ~Dg~I~vWd~~t~~~~~i~~l~~H~~~---V~~v~fspdg~~L~Sgs~Dg~I~vWd~-~~~~~~~~~~~~~~~~v~~l~~ 761 (949)
.|.-|++||.-+|+.+.-..-..|.+. -.+++|+|||..|+.|. ...|+++|+ +.|... ++.....
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c---------~vy~t~~ 200 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDC---------PVYTTVT 200 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCC---------cchhhhh
Confidence 999999999999955444443445543 46799999999998765 468999999 555311 1111100
Q ss_pred ccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC---CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 762 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 762 ~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
. | -+...+-+.|++++| +.+++|+...++-+|.-..+... ..+-+|.+.
T Consensus 201 ~---------~-------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl------~llggh~gG 252 (406)
T KOG2919|consen 201 K---------G-------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL------QLLGGHGGG 252 (406)
T ss_pred c---------c-------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce------eeecccCCC
Confidence 0 0 001122344555554 35889999999999888777776 345589999
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCC-eeEEeec-CCC-cEEEEEEc--CC--EEEEEECCCeEEEEECCC-CcE
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLS-EVRAMVVS--SE--LVYLGCKGGTVEIWDQKR-QIR 910 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~-~~~-~v~~l~~s--~d--~l~sgs~dg~I~vwd~~~-~~~ 910 (949)
|+.+.|+++|..+.+++..+-.|-.||++.. .++..+. |.. .-..|.|. |+ ++++|+.||.|++||.++ +..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999999999998876569999999864 4555554 322 33344443 43 899999999999999998 676
Q ss_pred EEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 911 IETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 911 ~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
+..+ ..|+..++.++++|--.+++|++..
T Consensus 333 ~sv~-~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVT-GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc-ccccccccceecCcccceeeeccCc
Confidence 7777 4788999999999988888877643
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=6.1e-16 Score=161.24 Aligned_cols=280 Identities=16% Similarity=0.222 Sum_probs=188.2
Q ss_pred EEEEecCCCCeEEEecCC-----------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC--------C---
Q 002234 642 KVLSNGHDSSADFWNHRE-----------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR--------G--- 697 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~-----------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~--------t--- 697 (949)
+++|||.|..|++|.+.. -...+..|+..|+++.|+|+ .++||+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 899999999999998651 23457789999999999997 99999999999999766 2
Q ss_pred ---CceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 698 ---SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 698 ---~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
..+...+.+.+|.+.|..++|+|++.++++++.|.++++||+..|.. .....+|..-+..++ |.|-+++
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgva-------wDpl~qy 179 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVA-------WDPLNQY 179 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceee-------cchhhhh
Confidence 22456677889999999999999999999999999999999999963 333345666777776 8888888
Q ss_pred EEEEEecCeEEEecC--CCCceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE
Q 002234 775 IKVHLRNGKTKLLNS--SKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 850 (949)
Q Consensus 775 l~~~~~~g~i~~~~~--~~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 850 (949)
+++-+.+.+.+.+.. ...+.++... +............++|.=++.+ .-...++|+|+|.+
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk---------------sFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK---------------SFFRRLSFTPDGSL 244 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh---------------hhhhhcccCCCCcE
Confidence 877777663333321 1222222210 0011111111222333222221 12345667777777
Q ss_pred EEEEEC----CC----CEEEEEECCC-CeeEEeec-CCCcEEEEEEcC------------------C--EEEEEECCCeE
Q 002234 851 TASTSL----DG----AAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSS------------------E--LVYLGCKGGTV 900 (949)
Q Consensus 851 l~s~s~----Dg----~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~------------------d--~l~sgs~dg~I 900 (949)
+++.+. ++ ++..+|+-.. .++...++ .......+.++| - .++.++ .+.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence 766420 11 1233443321 22333333 233344444433 1 244444 4579
Q ss_pred EEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 901 EIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 901 ~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
+|||.++..++.....-|-..|+.++|++||.+|+..|.||...+
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 999999999998887778899999999999999999999997654
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=3.9e-17 Score=165.51 Aligned_cols=250 Identities=14% Similarity=0.188 Sum_probs=179.8
Q ss_pred ccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEe---cccCC
Q 002234 640 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI---REHTK 711 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l---~~H~~ 711 (949)
.-+++.||.-|.|+|.|+. +....+.+|.+.|..+.|.|+ +++++|.|.+||+|++.+. .++..+ .+|.+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRD 182 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccC
Confidence 3478889999999999997 567788999999999999984 9999999999999999999 777766 57999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe----
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL---- 787 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~---- 787 (949)
.|.++.|+++|.+++|+|.|.++++|++...+.... .+ .+.. |+|++...-.-...-....+
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~--lE-----~s~~-------~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK--LE-----LSIT-------YSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh--hh-----hhcc-------cCCCCccCcCCccccccccccccc
Confidence 999999999999999999999999999986431100 00 0011 34443321100000001111
Q ss_pred cCCCCceEEEEeCCEEEEEECCCcEEEEECC-CCceeeee-cc------cccccCCCCCEEEEEE--eCCceEEEEEECC
Q 002234 788 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTFATIQ-TG------HRKLLGKANPVHALQV--HNGLVYTASTSLD 857 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~-~~------~~~~~~h~~~V~~l~~--~~~~~~l~s~s~D 857 (949)
.|..+|.|+.|-++.+++-+.++.|..|... -++.+... .+ ...+.-....|.-+.| ++-...++.+...
T Consensus 249 iHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 249 IHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred cccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence 2677899999999999999999999999872 22211000 00 0122222334445544 5778888888877
Q ss_pred CCEEEEEECCCCeeE--Eeec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 858 GAAVKMWSTSNYNMV--GSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 858 g~~I~iwd~~~~~~~--~~~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
| .|.+||++...+. .++. ....|...+|+.| .++..++|++|.-||.-
T Consensus 329 g-~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 G-KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred C-cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 6 9999999987653 2232 3567999999988 78889999999999863
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.7e-15 Score=143.41 Aligned_cols=271 Identities=11% Similarity=0.195 Sum_probs=195.1
Q ss_pred cccccccccEEEEecCCCCeEEEecCC------------ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCc-
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI- 699 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~- 699 (949)
..++++.+.+++.|..+|+|-+..+.. .+-..++|.++|+.++|..++|++|+. |.|+-|..+...
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhh
Confidence 345677888999999999999998751 334458999999999999888888876 999999875321
Q ss_pred ---eeeeEEe--cccC-----CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEE
Q 002234 700 ---LHLIQQI--REHT-----KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 769 (949)
Q Consensus 700 ---~~~i~~l--~~H~-----~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fs 769 (949)
.+.+... .-|. ..|+++-..|..+-++.++.|+.++-||+++|+. ......|.+-+.++..
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~-------- 164 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVG-------- 164 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeee--------
Confidence 1111111 1233 3589999999877788888999999999999963 3333445566655541
Q ss_pred eCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc---cccCC-CCCEEEEEEe
Q 002234 770 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR---KLLGK-ANPVHALQVH 845 (949)
Q Consensus 770 p~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~---~~~~h-~~~V~~l~~~ 845 (949)
. -..+.+++|+.||++++||.++++.+......+ .+..| ...|.+++.+
T Consensus 165 R---------------------------~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ 217 (325)
T KOG0649|consen 165 R---------------------------NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN 217 (325)
T ss_pred c---------------------------ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc
Confidence 0 012469999999999999999999987655432 22223 3457777665
Q ss_pred CCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEE
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCM 925 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l 925 (949)
.+ ++++++ |..+.+|+++..++...|+-...+..+.|..|.+++++..+.|.-|.+. |..-.....+|. ..++.
T Consensus 218 ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~-~c~s~ 291 (325)
T KOG0649|consen 218 ED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVEST-ACYSA 291 (325)
T ss_pred Cc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCcc-ceeee
Confidence 55 566664 4589999999999999999999999999999999999999999999874 443344433332 34555
Q ss_pred EEeCC-CCEEEEEeCCCcEEEE
Q 002234 926 ALDDN-EEFLVIGTSDGRIQAW 946 (949)
Q Consensus 926 ~~spd-g~~L~sgs~Dg~I~iW 946 (949)
.|+.. -++|-.++..+++.|+
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccCCceEEEEecccceeeeee
Confidence 55433 2566666777777765
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=153.59 Aligned_cols=270 Identities=15% Similarity=0.132 Sum_probs=196.6
Q ss_pred hccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
...+.|+..|.+++.|..||.|.+||+. ...+++.+|..+|++++||++ .|+|+|.|..|.+||+..| .+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEE
Confidence 3466778889999999999999999998 467789999999999999997 9999999999999999999 677777
Q ss_pred cccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 707 REHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 707 ~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
. ..++|+.+.|+|. .+..+..-.+..-.+-++..+...++.... .+. +...++...|.+.|+++.+|...|.+.
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-d~d---ln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD-DGD---LNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC-ccc---cccccccccccCCCCEEEEecCcceEE
Confidence 4 7889999999993 444444444555566666654423333221 111 122223335999999999999999999
Q ss_pred EecCC-------------CCceEEEEe--CCEEEEEECCCcEEEEECCCCcee---eeeccccccc--CCCCCEEEEEEe
Q 002234 786 LLNSS-------------KYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFA---TIQTGHRKLL--GKANPVHALQVH 845 (949)
Q Consensus 786 ~~~~~-------------~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~---~~~~~~~~~~--~h~~~V~~l~~~ 845 (949)
+++.. ..|+.+.++ +..++.-+.|..|+.|+++.-... ....+..++. -....-.+++|+
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 88742 345555555 356899999999999998721110 0000001111 112345678899
Q ss_pred CCceEEEEEECCCCEEEEEECCCCeeEEeecCC--CcEEEEEEcCCE-EEEEECCCeEEEEECCC
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--SEVRAMVVSSEL-VYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~d~-l~sgs~dg~I~vwd~~~ 907 (949)
.+|.|++.++.....+.||....|.+++.+.+. .....+.|+|-. ++..-..|.|+||....
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 999999988876679999999999999999853 467788888872 33333779999998654
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1e-16 Score=173.43 Aligned_cols=259 Identities=17% Similarity=0.265 Sum_probs=183.4
Q ss_pred EEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC------CCceeeeEEecccCCCEEEEEEecCCCE
Q 002234 653 DFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR------GSILHLIQQIREHTKAVTGLAILQSGEM 724 (949)
Q Consensus 653 ~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~------t~~~~~i~~l~~H~~~V~~v~fspdg~~ 724 (949)
+-|++.- ++..|.+.|+.+.|.|. .|++++.||++++|++. ....+++.+|.+|.++|.|+++.++++.
T Consensus 282 k~w~ik~---tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 282 KKWNIKF---TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred eecceee---eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 3466542 67789999999999985 99999999999999993 2345789999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CE
Q 002234 725 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GK 802 (949)
Q Consensus 725 L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~ 802 (949)
+++||.||+|+.|++.... .|+..+= .....-.+..|...++.++++. ..
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~-------------------------dp~ds~d---p~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQ-------------------------DPDDSYD---PSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred EEeeccCceeeeeccCCCC-------------------------CcccccC---cchhccceeccccceeeeeecccccc
Confidence 9999999999999876321 0000000 0000112234555666777764 56
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-----
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT----- 877 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~----- 877 (949)
|++++.||+++.|+....... .+. ....| +...++.+-.........+..-+.-.+++......+..+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~~-~f~---~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPC-TFG---EPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred eeeecCCceEEeeccCCcCcc-ccC---Ccccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence 999999999999998877662 221 11122 33455666433322222211111223334444444444431
Q ss_pred ---CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 878 ---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 878 ---~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...+..+.++|+ +.+++..|+.|+++|..++++++.. ..|...++++++.|+|.+|++++.||.|++|.+
T Consensus 486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccCccceEEecCCCCeeEecccCCceecccccccccchhe-eeccceecceeecCCCceEEeecCCceeehhhc
Confidence 134666777776 8889999999999999999999998 489999999999999999999999999999986
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.7e-17 Score=189.53 Aligned_cols=226 Identities=17% Similarity=0.239 Sum_probs=176.9
Q ss_pred cEEEEecCCCCeEEEecCC--------ceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCceeeeEEe--c
Q 002234 641 VKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQI--R 707 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~~~i~~l--~ 707 (949)
..|+.|..||.|.+||... .+.....|+|.|..+.|++ +.||+|+.||.|.|||++.- ..-.++ .
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~--~tP~~~~~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP--ETPFTPGSQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc--CCCCCCCCC
Confidence 4688999999999999873 4556778999999999998 39999999999999999875 222232 2
Q ss_pred ccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCC--ceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 708 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD--QIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 708 ~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.-.+.|.+++|+. ....|++++.+|.+.|||++..+ ..+....+.. .+..+. |+|++..
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~-------WhP~~aT---------- 220 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLA-------WHPDHAT---------- 220 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeee-------eCCCCce----------
Confidence 2467899999998 46789999999999999999864 2222222222 223333 6666543
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCC---cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEECCCCE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDG---AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAA 860 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~ 860 (949)
.+++++.|. .|.+||++.-.... +.+.+|...|.++.|++.+ .++++++.|+ .
T Consensus 221 -----------------ql~~As~dd~~PviqlWDlR~assP~-----k~~~~H~~GilslsWc~~D~~lllSsgkD~-~ 277 (1049)
T KOG0307|consen 221 -----------------QLLVASGDDSAPVIQLWDLRFASSPL-----KILEGHQRGILSLSWCPQDPRLLLSSGKDN-R 277 (1049)
T ss_pred -----------------eeeeecCCCCCceeEeecccccCCch-----hhhcccccceeeeccCCCCchhhhcccCCC-C
Confidence 466666554 68999998655432 5667999999999998654 8899999997 9
Q ss_pred EEEEECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCc
Q 002234 861 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~ 909 (949)
|.+|+..+++.+..+. ...++..+.|.|. .+++++.||.|.||.+.+..
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999998 6788999999876 78999999999999987654
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.3e-16 Score=166.75 Aligned_cols=236 Identities=18% Similarity=0.234 Sum_probs=179.2
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccc----eEEEEeCCCEEE
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS----ILCFIPQGAGIK 776 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~fsp~g~~l~ 776 (949)
.+-..+.||++.|.++...|.|.+|++||.||+|+||.+.+| .|+......+.|.+++|++. .++....+..++
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 455678899999999999999999999999999999999999 78888777889999985442 111111111111
Q ss_pred EEE-----------------------ecCeEEEe----------------cCCCCceEEEEeC--CEEEEEECC---CcE
Q 002234 777 VHL-----------------------RNGKTKLL----------------NSSKYPKCLALVQ--GKVYCGCQD---GAI 812 (949)
Q Consensus 777 ~~~-----------------------~~g~i~~~----------------~~~~~v~~v~~~~--~~l~sgs~D---g~I 812 (949)
+.. -++.+..| .+.+.|+.+.++. ++|++.+.+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 000 00111223 2445677788874 567776554 468
Q ss_pred EEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcC--C
Q 002234 813 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS--E 889 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~--d 889 (949)
.|+++...... ..+.-..+.|..+.|||...+++.++.. .|+|||+.....++.+. +...|..++++| |
T Consensus 549 liHQLSK~~sQ------~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 549 LIHQLSKRKSQ------SPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEeccccccc------CchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 88888876654 2343445789999999998888887754 89999999888887776 678899999998 5
Q ss_pred EEEEEECCCeEEEEECCCC-cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 890 LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 890 ~l~sgs~dg~I~vwd~~~~-~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
.+++|+.|+.+..||+.-+ ++.+++ ..|...+++|+|++.-.++++|+.||++.|+-
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 8999999999999999865 456666 48999999999999999999999999999873
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=165.84 Aligned_cols=257 Identities=18% Similarity=0.253 Sum_probs=192.0
Q ss_pred ceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002234 670 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 747 (949)
Q Consensus 670 ~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~ 747 (949)
.|..++|-|| .++.+. +..+.+||.+.| ..++++++|.+.|++++|+.||+.++||+.|+.|.+|+..- .-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 7899999997 444333 347999999999 89999999999999999999999999999999999998654 344
Q ss_pred EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec----------CCCCceEEEEeC--CEEEEEECCCcEEEE
Q 002234 748 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN----------SSKYPKCLALVQ--GKVYCGCQDGAIQEI 815 (949)
Q Consensus 748 ~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~----------~~~~v~~v~~~~--~~l~sgs~Dg~I~iw 815 (949)
....|.+.|.++. |+|-...+++.+.+. .-+|. ....+.+.++.+ .+++.|-.||+|.+-
T Consensus 88 LkYSH~D~IQCMs-------FNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMS-------FNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eeeccCCeeeEee-------cCchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 5567889999998 788777766655332 23443 234566777764 458899999999998
Q ss_pred ECCCCceeeeecccccccCCCCCEEEEEEeCCce-----EEEEEECCCCEEEEEECCCCeeEE-eecCCCcEEEEEEcCC
Q 002234 816 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-----YTASTSLDGAAVKMWSTSNYNMVG-SLPTLSEVRAMVVSSE 889 (949)
Q Consensus 816 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-----~l~s~s~Dg~~I~iwd~~~~~~~~-~~~~~~~v~~l~~s~d 889 (949)
+-.......+ ....|...+|.+++|+|... .++..... .++.++.+. |+.+. .-.-.....|+.+.++
T Consensus 160 Nk~gEek~~I----~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~-qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 160 NKNGEEKVKI----ERPGGSNSPIWSICWNPSSGEGRNDILAVADWG-QTLSFYQLS-GKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred cCCCCcceEE----eCCCCCCCCceEEEecCCCCCCccceEEEEecc-ceeEEEEec-ceeecccccCCCCchhheeccC
Confidence 7544433332 23345678999999987532 34444443 366666653 44443 2223455677887776
Q ss_pred --EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 --LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 --~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++..|+.|+.+.+|-. .|-.+.++ .....+|+.++..|++++++.|+.||+|--|++
T Consensus 234 GEy~LiGGsdk~L~~fTR-~GvrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTR-DGVRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CcEEEEccCCCceEEEee-cCeEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 8999999999999974 56677777 346669999999999999999999999988775
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=8.9e-17 Score=179.77 Aligned_cols=269 Identities=17% Similarity=0.249 Sum_probs=196.8
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~ 700 (949)
++|+..+.+..+.-.|.++++|+.|..++||... .+.....||.+.|+.++.+.+ ++++++.|..|++|.+.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-- 264 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-- 264 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence 4455556666677789999999999999999977 467788999999999999986 9999999999999999999
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-.- ..... .+ ..+++.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~---~~y~p--rp------------~~~~~~------- 316 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP---RIYVP--RP------------LKFTEK------- 316 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccc---cccCC--CC------------CCcccc-------
Confidence 8999999999999999999954 78899999999988211 11000 00 000110
Q ss_pred cCeEEEecCCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEECC
Q 002234 781 NGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLD 857 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D 857 (949)
+.+.++.+.. ..+.+|+.|+.-..|.+..-.. +...+.-+.++.+. .+.++.-.+
T Consensus 317 ----------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 317 ----------DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------------RSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred ----------cceeeeeccccccccccccCCcccccchhhHhhh------------hccceEEEeccccccccceeeeee
Confidence 1111222221 2477888888877776542221 12222222222222 233333334
Q ss_pred CCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCE
Q 002234 858 GAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 933 (949)
Q Consensus 858 g~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~ 933 (949)
..+++|++.+|...+... |...+..+.++|- ...+++.||...|||+-.|.+++.+..+|. .+..-+||+||..
T Consensus 375 -~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 375 -HRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTS 452 (1113)
T ss_pred -eEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCce
Confidence 488999999999888777 6778888888875 677899999999999999998888876765 5677789999999
Q ss_pred EEEEeCCCcEEEEe
Q 002234 934 LVIGTSDGRIQAWG 947 (949)
Q Consensus 934 L~sgs~Dg~I~iWd 947 (949)
++....-|.++|..
T Consensus 453 ~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 453 IALSDDHGQLYILG 466 (1113)
T ss_pred EecCCCCCceEEec
Confidence 99888888888865
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2e-16 Score=171.14 Aligned_cols=252 Identities=17% Similarity=0.230 Sum_probs=182.0
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecC----------CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEE
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV 692 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~----------~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~v 692 (949)
+.+-..++..++.+.-..|++++.||++++|++. ..+..+.+|.++|.|+++.++ .+++|+.||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 3444555667777777789999999999999983 367789999999999999986 9999999999999
Q ss_pred EecCCC--------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 693 WTGRGS--------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 693 Wd~~t~--------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
|++..+ .......+.||++.||.+++|+....|+++|.|||++.|+........+......+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g---------- 440 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG---------- 440 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC----------
Confidence 965421 01345678899999999999999999999999999999998876431111111111
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE---EEEEECCCcEEEEECCCCceeeeecccc-cccCCCCCEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK---VYCGCQDGAIQEIDLATGTFATIQTGHR-KLLGKANPVH 840 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~---l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~ 840 (949)
...++.+.... .++...-+.-.++|+..+....++.... ........++
T Consensus 441 ---------------------------~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 441 ---------------------------YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ---------------------------CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 11122222111 2222222333344444444443332110 1111224577
Q ss_pred EEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 841 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
-+.++|+..+..++..|. .|+++|..++.++.... |...++++++.|+ ++++|+.||.+++|......++...
T Consensus 494 ~vVs~~~~~~~~~~hed~-~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDR-SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred eEEecCCCCeeEecccCC-ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 888999999999988885 99999999999988776 8889999999999 8999999999999999877766655
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.4e-15 Score=155.06 Aligned_cols=285 Identities=13% Similarity=0.119 Sum_probs=204.0
Q ss_pred HHhhHhhhccccccccccEEEEecCCCCeEEEecCC--------ceeeec-CCCCceEEEEEeCC--EEEEEeCCCcEEE
Q 002234 624 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--------LVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKV 692 (949)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--------~~~~~~-~h~~~V~~l~~s~d--~lasgs~Dg~I~v 692 (949)
.+.|-..+....|+..+.+|++||.|..+++|+.++ .+.+.. .|...|.|++|... ++++|+.+|+|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 455555666677777899999999999999999762 333333 45689999999864 9999999999999
Q ss_pred EecCCCceeeeEEecccC---CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEEEeecCCCceeeeeeccceEE
Q 002234 693 WTGRGSILHLIQQIREHT---KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILC 767 (949)
Q Consensus 693 Wd~~t~~~~~i~~l~~H~---~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~ 767 (949)
-|+++. +.+..+. |. +.|+.+..+|..+.|++.+.+|.|.+||.+... ...+...........+.
T Consensus 132 HDiEt~--qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~------- 201 (609)
T KOG4227|consen 132 HDIETK--QSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE------- 201 (609)
T ss_pred eecccc--eeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee-------
Confidence 999998 5665553 44 489999999998999999999999999998753 11111111122222222
Q ss_pred EEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCcee-eeecccccccCCCCCEEEEEEeC
Q 002234 768 FIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA-TIQTGHRKLLGKANPVHALQVHN 846 (949)
Q Consensus 768 fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~l~~~~ 846 (949)
|.|... ..|++.+..+-+-+||++..... ..+.....+......-.++.|+|
T Consensus 202 F~P~~P---------------------------~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 202 FHPETP---------------------------ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred ecCCCc---------------------------eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 333322 34788888899999999865532 11222222222233446788999
Q ss_pred CceEEEEEECCCCEEEEEECCCCe-eEEeecCC-------CcEEEEEEcCC-EEEEEECCCeEEEEECCCC---------
Q 002234 847 GLVYTASTSLDGAAVKMWSTSNYN-MVGSLPTL-------SEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQ--------- 908 (949)
Q Consensus 847 ~~~~l~s~s~Dg~~I~iwd~~~~~-~~~~~~~~-------~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~--------- 908 (949)
+|..+.+.-.. ..-.+||+.+.+ .+..+.|. ..+.+++|-.| .+++|+.+-.|++|.+...
T Consensus 255 ~G~Q~msiRR~-~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 255 SGNQFMSIRRG-KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred CCCeehhhhcc-CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCcccc
Confidence 88887776443 466788887744 34444432 34678888888 6999999999999987421
Q ss_pred --------------cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 909 --------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 909 --------------~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+.+..+ .||.+.++.+.|+|...+|++.+-.+.+++|.
T Consensus 334 G~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcchhhCchhheecceeEEE-ecccccccceeecCCcceEeccchhhheeccc
Confidence 123344 58999999999999999999999999999995
No 169
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=7.7e-16 Score=168.39 Aligned_cols=238 Identities=17% Similarity=0.214 Sum_probs=162.0
Q ss_pred cccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc------------
Q 002234 639 EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI------------ 699 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~------------ 699 (949)
.-..|++++.|.++++||+.+ ....+.||.+.|.+++|.+. .|++|+.||.|.|||+.-..
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 345899999999999999983 33458899999999999983 99999999999999986321
Q ss_pred -------------eeeeEEecccCCCEEE---EEEecCCCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceeeeeec
Q 002234 700 -------------LHLIQQIREHTKAVTG---LAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 700 -------------~~~i~~l~~H~~~V~~---v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~ 762 (949)
.+.+.....|.+.|.+ +.+..|...|||+|. |+.|+|||++... +.... ....+..+-
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~--~~~r~-ep~~~~~~~-- 265 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY--TAYRQ-EPRGSDKYP-- 265 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc--ccccc-CCCcccCcc--
Confidence 0112223345555666 666678899999988 9999999999863 11110 000111100
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
.+..+ .-.+.++..+ +.++++.+.|++|+.||+.+-..-.. ..+.++...-.
T Consensus 266 ------t~skr----------------s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~----~~~sg~~~~sf 319 (720)
T KOG0321|consen 266 ------THSKR----------------SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV----AEFSGKLNSSF 319 (720)
T ss_pred ------Ccccc----------------eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch----hhccCccccee
Confidence 00000 0112222222 35788888899999999987554321 22223322222
Q ss_pred EE--EEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCC
Q 002234 841 AL--QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 841 ~l--~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~ 908 (949)
.+ ..+|++.++++++.|+ ...+|.+.+...--.+. |...|++++|.|. -++++++|.+++||++..+
T Consensus 320 ~vks~lSpd~~~l~SgSsd~-~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDE-QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeecCCCCceEeccCCCc-ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 22 2369999999999997 99999998765433332 6788999999876 5888899999999998654
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=1.6e-13 Score=156.52 Aligned_cols=295 Identities=26% Similarity=0.426 Sum_probs=221.4
Q ss_pred cccc-EEEEecC-CCCeEEEecC---CceeeecCCCCceEEEEEeCC--EEEEEeC-CCcEEEEecCCCceeeeEEeccc
Q 002234 638 FEMV-KVLSNGH-DSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREH 709 (949)
Q Consensus 638 ~~~~-~l~s~s~-dg~I~vWd~~---~~~~~~~~h~~~V~~l~~s~d--~lasgs~-Dg~I~vWd~~t~~~~~i~~l~~H 709 (949)
.++. .++..+. |+.+.+|+.. ........|...|..++|+|+ .+++++. |+.+++|+..++ ..+..+.+|
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 197 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGH 197 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccC
Confidence 3444 4444444 9999999997 456778899999999999996 6888875 999999999987 788888899
Q ss_pred CCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 710 TKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 710 ~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
...|.+++|+|++. .+++++.|++|++||...+.........+.... .. .|+|++..++.+..++.+++|+
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-------SFSPDGSLLASGSSDGTIRLWD 269 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-------eECCCCCEEEEecCCCcEEEee
Confidence 99999999999998 566669999999998886542221222222221 11 3899998888888889998886
Q ss_pred C-------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 789 S-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 789 ~-------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
. ...+.++.+.+ ..+++++.|+.+.+||..+........ ...|...+..+.+.+++..+..
T Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 345 (466)
T COG2319 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVS 345 (466)
T ss_pred ecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEE
Confidence 3 34667777776 567778999999999998887664322 3467778999999333234444
Q ss_pred E-ECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC-EEE-EEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 854 T-SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVY-LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 854 ~-s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
+ ..| +.+.+|+...............+..+.++++ .+. .+..++.+.+|+........... .+...+....++++
T Consensus 346 ~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 423 (466)
T COG2319 346 GGSDD-GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD-GHTSRVTSLDFSPD 423 (466)
T ss_pred eecCC-CcEEeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeecc-CCCCcEEEEEECCC
Confidence 4 566 5899999988773333333333778888773 233 36789999999999988877774 33268999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 002234 931 EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 931 g~~L~sgs~Dg~I~iWdl 948 (949)
+..+++++.++.+++|++
T Consensus 424 ~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 424 GKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CcEEEEecCCCcEEEEec
Confidence 999999999999999986
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=5.2e-15 Score=168.94 Aligned_cols=272 Identities=17% Similarity=0.188 Sum_probs=188.9
Q ss_pred CCeEEEecCCc--eeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCceeeeE----EecccCCCEEEEEEec
Q 002234 650 SSADFWNHREL--VHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ----QIREHTKAVTGLAILQ 720 (949)
Q Consensus 650 g~I~vWd~~~~--~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~~~i~----~l~~H~~~V~~v~fsp 720 (949)
+.+.||+.+.. ......-...|+|+.|+| ++++.|+.+|.|-+||+..+...+.. ....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 36889998843 233334578899999987 49999999999999999977432122 2236899999999987
Q ss_pred CC--CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEE
Q 002234 721 SG--EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 798 (949)
Q Consensus 721 dg--~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~ 798 (949)
+- .-++|+|.||.|..|+++.-.. ............ .+. -......+.+++|
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~-------------~~~------------~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKH-------------KGQ------------QSSKAVGATSLKF 355 (555)
T ss_pred cCCCCceEEEecCCcEeeeecccccc-chhhcccccccc-------------ccc------------ccccccceeeEee
Confidence 54 4599999999999998765320 001000000000 000 0001223455666
Q ss_pred e---CCEEEEEECCCcEEEEECCCCcee--eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC-CCeeE
Q 002234 799 V---QGKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV 872 (949)
Q Consensus 799 ~---~~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-~~~~~ 872 (949)
. +..+++|+.+|.|..-+-...+.. ..+.++..+..|.++|+++.++|=+..+...+.|. +++||... ...++
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVIASPL 434 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCCCCcc
Confidence 4 457999999999887332222111 23444456778999999999998655444444475 99999987 66666
Q ss_pred Eeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCC--cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 873 GSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ--IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 873 ~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~--~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
..+. +...+++++|||- .++++..||.+.+||+... .++.+.. -+....+.+.|+++|+.|++|...|++.+|
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 6666 5566999999987 7899999999999998643 3555553 235567888899999999999999999999
Q ss_pred eCC
Q 002234 947 GLS 949 (949)
Q Consensus 947 dl~ 949 (949)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 973
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=4.8e-14 Score=157.18 Aligned_cols=267 Identities=12% Similarity=0.178 Sum_probs=171.7
Q ss_pred EEEecCCCCeEEEecCC-----ceeeecCCCCceEEEEEeCC--EEEEE-eCCCcEEEEecC-CCceeeeEEecccCCCE
Q 002234 643 VLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVWTGR-GSILHLIQQIREHTKAV 713 (949)
Q Consensus 643 l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~~s~d--~lasg-s~Dg~I~vWd~~-t~~~~~i~~l~~H~~~V 713 (949)
+++.+.|+.|.+|+..+ .+... .+.+....++++|+ +|+.+ ..++.|.+|++. ++....+.... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44557799999999852 22233 24566788999987 55554 468999999997 44333333332 33456
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEECCCCe-e-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 714 TGLAILQSGEMLYSGSL-DKTARVWSIGNEE-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~-~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
..++|+|+|+++++++. ++.|.+|++++.. . ............. .+.++|+|+.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~p~g~~l--------------- 140 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-------SANIDPDNRTL--------------- 140 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-------EeEeCCCCCEE---------------
Confidence 78999999999888875 8899999997421 1 1111111111222 23377887763
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeec-ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC-
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT-GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN- 868 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~- 868 (949)
+++...++.|.+||+.+...+.... ...... .......+.|+|++.++.+....+++|.+||+..
T Consensus 141 ------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 141 ------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ------------EEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 3455567999999998643221100 000111 1234678999999999988877446999999973
Q ss_pred -C--eeEEeec-------CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCc----EEEEeccccccceeEEEEeCCC
Q 002234 869 -Y--NMVGSLP-------TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNE 931 (949)
Q Consensus 869 -~--~~~~~~~-------~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~----~~~~l~~~h~~~I~~l~~spdg 931 (949)
+ +.+..+. +......+.++|+ +++++. .++.|.+|+++... .+.....+ .....+.|+|||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg 285 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSG 285 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCC
Confidence 2 2333332 1123346889998 677775 47899999986533 23333222 246789999999
Q ss_pred CEEEEEeC-CCcEEEEeC
Q 002234 932 EFLVIGTS-DGRIQAWGL 948 (949)
Q Consensus 932 ~~L~sgs~-Dg~I~iWdl 948 (949)
++|++++. +++|.+|++
T Consensus 286 ~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CEEEEEEccCCcEEEEEE
Confidence 99998875 899999976
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=3.1e-15 Score=155.09 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=158.4
Q ss_pred ceeeecCCCCceEEEEEeC--C-EEEEEeCCCcEEEEecCCCc-----eeeeEEecccCCCEEEEEEecC-CCEEEEEeC
Q 002234 660 LVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQS-GEMLYSGSL 730 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~--d-~lasgs~Dg~I~vWd~~t~~-----~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~ 730 (949)
......||+++|..++|+| | .|||||+|.+|.||++..+. ..++..+.+|...|..|.|+|. .+.|+|+|.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 4456789999999999998 3 99999999999999987542 2567889999999999999995 678999999
Q ss_pred CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC
Q 002234 731 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG 810 (949)
Q Consensus 731 Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg 810 (949)
|.+|.+|++.+|+ .+....|.+.|+++. |+.||.. +++.+.|.
T Consensus 153 Dn~v~iWnv~tge--ali~l~hpd~i~S~s-------fn~dGs~----------------------------l~TtckDK 195 (472)
T KOG0303|consen 153 DNTVSIWNVGTGE--ALITLDHPDMVYSMS-------FNRDGSL----------------------------LCTTCKDK 195 (472)
T ss_pred CceEEEEeccCCc--eeeecCCCCeEEEEE-------eccCCce----------------------------eeeecccc
Confidence 9999999999995 333344888888887 8888874 88999999
Q ss_pred cEEEEECCCCceeeeecccccccCCCC-CEEEEEEeCCceEEEEEEC--CCCEEEEEECCCCe---eEEeecCCCcEEEE
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHNGLVYTASTSL--DGAAVKMWSTSNYN---MVGSLPTLSEVRAM 884 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~--Dg~~I~iwd~~~~~---~~~~~~~~~~v~~l 884 (949)
.|++||.++++.+..- .+|.+ .-..+.|-.++.++.+|-. .++.+-+||..+-+ ....+...+.|.--
T Consensus 196 kvRv~dpr~~~~v~e~------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~P 269 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEG------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLP 269 (472)
T ss_pred eeEEEcCCCCcEeeec------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEe
Confidence 9999999999988542 34432 2334556666664444321 22689999977643 33444466777777
Q ss_pred EEcCC--E-EEEEECCCeEEEEECCCCc
Q 002234 885 VVSSE--L-VYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 885 ~~s~d--~-l~sgs~dg~I~vwd~~~~~ 909 (949)
-+.+| . .++|-.|+.|+.|.+....
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCC
Confidence 77888 3 4556689999999997765
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=9.8e-15 Score=167.49 Aligned_cols=267 Identities=14% Similarity=0.223 Sum_probs=179.0
Q ss_pred ccEEEEecCCCCeEEEecCCce--eeec---CCCCceEEEEEeCC----EEEEEeCCCcEEEEecC-C--CceeeeEEec
Q 002234 640 MVKVLSNGHDSSADFWNHRELV--HVDS---SENGKVLSIACFRD----KIFSGHSDGTIKVWTGR-G--SILHLIQQIR 707 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~--~~~~---~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~-t--~~~~~i~~l~ 707 (949)
-..++++.....|+|||++... ..+. .....|+.+.+-.+ ++.+|+.||.||||+-- + ++.+.+..+.
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS 1155 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec
Confidence 3456777777889999998422 2222 23457899998763 89999999999999632 2 2224444332
Q ss_pred c---c----CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee--cCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 708 E---H----TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH--DIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 708 ~---H----~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
+ + .+.=.-++|.....+|+++|.-..|+|||..... +.... .....++++. ++-
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS---------~~~------ 1218 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ--VVADIPYGSSTLVTALS---------ADL------ 1218 (1387)
T ss_pred cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce--eEeecccCCCccceeec---------ccc------
Confidence 2 1 1111346787766667777768899999998863 22221 1122222221 110
Q ss_pred EecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC--EEEEEEeCCceE-EEEEE
Q 002234 779 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP--VHALQVHNGLVY-TASTS 855 (949)
Q Consensus 779 ~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~-l~s~s 855 (949)
..++.+++|..||.|++||.+....-.. ......|... |..+.+.++|.- +++++
T Consensus 1219 -------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds~---v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1219 -------------------VHGNIIAAGFADGSVRVYDRRMAPPDSL---VCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred -------------------cCCceEEEeecCCceEEeecccCCcccc---ceeecccCCcccceeEEeecCCCcceeeec
Confidence 0134689999999999999886543211 1344556666 999999876555 99999
Q ss_pred CCCCEEEEEECCCCeeEEeec---C---CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec------cccccc
Q 002234 856 LDGAAVKMWSTSNYNMVGSLP---T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ------TGTSGK 921 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~---~---~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~------~~h~~~ 921 (949)
.|| .|++||++.......+. + ++..+++.++++ .+++|+. +.|+||++... .+..++ ....+.
T Consensus 1277 ~~G-~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1277 QDG-DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred cCC-eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCC
Confidence 997 99999999853222222 1 345999999887 7888888 99999998543 333332 122347
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 922 VQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 922 I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.|++|+|-.-.+++|+.|.+|.||.-
T Consensus 1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cceeeecchhHhhhhccCCceEEEeec
Confidence 899999999999999999999999964
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=2.4e-13 Score=154.96 Aligned_cols=277 Identities=27% Similarity=0.458 Sum_probs=206.5
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecCCc---eeeecCCC-CceEEEEE-eCC---EEEEEeC-CCcEEEEecCC-C
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHREL---VHVDSSEN-GKVLSIAC-FRD---KIFSGHS-DGTIKVWTGRG-S 698 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~---~~~~~~h~-~~V~~l~~-s~d---~lasgs~-Dg~I~vWd~~t-~ 698 (949)
.......+...+..++.++.|+.+.+|+.... ...+.++. ..+..+.+ +++ .++..+. |+.+.+||..+ .
T Consensus 66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 34445566667888999999999999998743 44555534 37777777 553 4444444 99999999998 5
Q ss_pred ceeeeEEecccCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 777 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~ 777 (949)
.....+..|...|..++|+|++..+++++. |+.+++|++.++. .......+...+.++. |+|++..
T Consensus 146 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~-------~~~~~~~--- 212 (466)
T COG2319 146 --KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLA-------FSPDGGL--- 212 (466)
T ss_pred --eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEE-------EcCCcce---
Confidence 678888899999999999999999999986 9999999999853 2222222566777776 6666652
Q ss_pred EEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC
Q 002234 778 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 857 (949)
Q Consensus 778 ~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D 857 (949)
.+++++.|+.|++||...+..... .+.+|.... ...|++++.++++++.|
T Consensus 213 ------------------------~~~~~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 213 ------------------------LIASGSSDGTIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred ------------------------EEEEecCCCcEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCEEEEecCC
Confidence 144458999999999887766631 456666664 33889988888888888
Q ss_pred CCEEEEEECCCCee-EEee-cCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec-cccccceeEEEEeCCCC
Q 002234 858 GAAVKMWSTSNYNM-VGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNEE 932 (949)
Q Consensus 858 g~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~-~~h~~~I~~l~~spdg~ 932 (949)
+ .+++||...... ...+ .|...+.++.|+|+ .+++++.|+.+.+||..+........ ..|...+..+.|.+++.
T Consensus 263 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
T COG2319 263 G-TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341 (466)
T ss_pred C-cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCC
Confidence 6 999999986654 4444 46789999999984 66668888999999998887666653 36777899999943435
Q ss_pred EEEEE-eCCCcEEEEeCC
Q 002234 933 FLVIG-TSDGRIQAWGLS 949 (949)
Q Consensus 933 ~L~sg-s~Dg~I~iWdl~ 949 (949)
.++.+ ..|+.+.+|++.
T Consensus 342 ~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EEEEeecCCCcEEeeecC
Confidence 66666 688999999863
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-13 Score=157.82 Aligned_cols=292 Identities=14% Similarity=0.201 Sum_probs=208.2
Q ss_pred cCCCCeEEEecCCcee------eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC--CceeeeEEecccCCCEEEE
Q 002234 647 GHDSSADFWNHRELVH------VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG--SILHLIQQIREHTKAVTGL 716 (949)
Q Consensus 647 s~dg~I~vWd~~~~~~------~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t--~~~~~i~~l~~H~~~V~~v 716 (949)
-.+..+.+|+...... ....|.-.+++.++||+ ++++|..||.|.+|.--. +.-.....+.-|...|+++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 3455677787764212 23347777999999996 999999999999996433 3223456677899999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-------
Q 002234 717 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------- 789 (949)
Q Consensus 717 ~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------- 789 (949)
.|+++|.+|+|||..|.+-+|.+.+++.+.+ ....++|..+. ++||+....+...|+.+.+...
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL--PRLgs~I~~i~-------vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGKKQFL--PRLGSPILHIV-------VSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCCcccc--cccCCeeEEEE-------EcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 9999999999999999999999999863333 34477888887 9999999999999999887753
Q ss_pred ----------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeeccccc--cc---CCCCCEEEEEEeC
Q 002234 790 ----------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRK--LL---GKANPVHALQVHN 846 (949)
Q Consensus 790 ----------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~---~h~~~V~~l~~~~ 846 (949)
.+..+.+.+++ +.++-.+..|.|++||+-+...+..+..... .. .+...++.++.+-
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 12234455555 5678888999999999998887754322110 01 2334677888877
Q ss_pred CceEEEEEEC--------CC-CEEEEEECCCC----eeEEeec--CCCcEEEEEEcC----CEEEEEECCCeEEEEECCC
Q 002234 847 GLVYTASTSL--------DG-AAVKMWSTSNY----NMVGSLP--TLSEVRAMVVSS----ELVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 847 ~~~~l~s~s~--------Dg-~~I~iwd~~~~----~~~~~~~--~~~~v~~l~~s~----d~l~sgs~dg~I~vwd~~~ 907 (949)
.+.++++.-. || ..+++|-.... .+...+. |...+...++.+ +..++++.||.++||-+..
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 7999888632 11 36788976533 3333333 665555555543 2789999999999998733
Q ss_pred Cc---------EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 908 QI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 908 ~~---------~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+ ....+...|..++++.+|+.||..| +.+.|++|.+||.
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDY 537 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecC
Confidence 21 1222222477899999999999655 5667889999996
No 177
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.65 E-value=1.1e-14 Score=184.11 Aligned_cols=322 Identities=13% Similarity=0.115 Sum_probs=235.6
Q ss_pred hHHHHHHHHHHhhcc-cchhhhHHHHHHHHHHHHHhcCChhHHHhhc-hhhHHhhhhhhhccCCchhHHHHHHHHHHhhc
Q 002234 120 TITELKHAITSLCMS-EILNESEMAVLQIERCWLEASMELDIQIMLS-KPAVINGFVEILFNSVDPRVLEATIFLLSELG 197 (949)
Q Consensus 120 ~~~el~~~i~~l~~s-~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~-~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~ 197 (949)
...+....|++|.+. ...+++++++.+|++++++..+++.+ ++ .++++..|+.+|.. .+..+++.++++|.+|
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~---Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nL- 85 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKA---IGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVL- 85 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHH---HHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHH-
Confidence 467778889999854 24566899999999999999988777 54 46777778887764 5688999999999999
Q ss_pred ccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCC---hHHH----HHhhhhHHHHHHHHhccccchhcc
Q 002234 198 SRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS---TRTL----IEMDMMESLMTVIKKKEEDFLKMC 266 (949)
Q Consensus 198 ~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~---~~~~----~~~~~~~~lv~~l~~~~~~~~~~~ 266 (949)
+.++.++..|+ ..|++++|+.+|+.| +..||.+|+.|+.. +.+. +..|.+|+|+++++.|+... .
T Consensus 86 S~~e~nk~~Iv-~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d-~-- 161 (2102)
T PLN03200 86 CKEEDLRVKVL-LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD-K-- 161 (2102)
T ss_pred hcCHHHHHHHH-HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhh-H--
Confidence 55577888888 589999999999998 67888999999865 3332 34566799999999985211 0
Q ss_pred cCchhhHHHHHHHHhcCCcccccccch-hhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCch
Q 002234 267 LKPKSVSVLLLGQMIGDSEESIVSSIA-NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELA 345 (949)
Q Consensus 267 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~ 345 (949)
.-+..++..|.. ++...++. ..++..|++|.|++++++++.+.+..|+.+|.+.+..+...+..+.+.|.++
T Consensus 162 -~L~~~Av~AL~n------Ls~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP 234 (2102)
T PLN03200 162 -VVEGLLTGALRN------LCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVK 234 (2102)
T ss_pred -HHHHHHHHHHHH------HhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 001112333322 35555665 4678999999999999999999999999999988888777899999999999
Q ss_pred hhHHHHHhcCC-cchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCc---------cchhHHHH
Q 002234 346 PVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD---------QCPVVAGL 415 (949)
Q Consensus 346 ~l~~ll~~~~~-~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~---------~~~~~a~~ 415 (949)
+|+++|+++++ ..|++|+.+|.++... ..+..+.|.+.|++ ..|+.+++....+ .+..+.+.
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~-----s~e~r~~Iv~aGgI---p~LI~lL~sp~~e~~~~~~~~~Lqe~AvwA 306 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQ-----SKEAKQAIADAGGI---PALINATVAPSKEFMQGEFAQALQENAMGA 306 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCCH---HHHHHHHhCcchhhhccccchHHHHHHHHH
Confidence 99999988655 7799999999999764 44566678888887 4588787643311 13456666
Q ss_pred HHhhhc--------c---------------------------cCCCCCC-ccH-HHHHHHHHHHhhcCCChHHHHHHHHH
Q 002234 416 LLQLDL--------L---------------------------AEPRKMS-IYR-EEAIDTLISCLRNSDYPAAQLAAAKT 458 (949)
Q Consensus 416 l~~l~~--------l---------------------------~~~~~~~-~~r-~~~~~~l~~~l~~~~~~~~~~~~~~~ 458 (949)
|.++.- | ..+.... .+. -.++.+|+..+++.+...+|+.++.|
T Consensus 307 LsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eA 386 (2102)
T PLN03200 307 LANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEA 386 (2102)
T ss_pred HHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHH
Confidence 665311 1 1111100 011 12357799999999876678888899
Q ss_pred HHhcCcc
Q 002234 459 IVSLQGR 465 (949)
Q Consensus 459 l~~l~~~ 465 (949)
|..|.|.
T Consensus 387 Lasl~gN 393 (2102)
T PLN03200 387 LASLYGN 393 (2102)
T ss_pred HHHhcCC
Confidence 8776554
No 178
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.63 E-value=1.4e-14 Score=153.16 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=192.2
Q ss_pred cEEEEecCCCCeEEEecC------CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 641 VKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
..+++|...|.|-+||+. +.+..+..|.++|.++.|+|. .+++.|+||+|+.-|++++....+..+..-..
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 477888889999999994 467888999999999999993 99999999999999999986566666654566
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC-EEEEEEecCeEEEecC-
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA-GIKVHLRNGKTKLLNS- 789 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~-~l~~~~~~g~i~~~~~- 789 (949)
.+.++.|+.+...++.|..=|...+||.+++........-|+..|.+++ ++|... .+++++.|++.++||.
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-------~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA-------LNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee-------cCCCCchheeecccCcceeeeehh
Confidence 7888999888888888888789999999998644444445566899988 666554 5778888999999983
Q ss_pred ---------------CCCceEEEEeC--CEEEEEECCCcEEEEECC----CCceeeeecccccccCCCCCEEEEEEeCCc
Q 002234 790 ---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA----TGTFATIQTGHRKLLGKANPVHALQVHNGL 848 (949)
Q Consensus 790 ---------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~----~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 848 (949)
...|.+..|+| +.|++.+.|..|++||.. ......... |....+..-......|+|+.
T Consensus 354 ~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 354 QLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred hhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCc
Confidence 34577888886 679999999999999984 222111111 11111111234456799999
Q ss_pred eEEEEEECCCCEEEEEECCCCeeEEeecC--CCcEEE-EEEcCC--EEEE-EECCCeEEEEECCC
Q 002234 849 VYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRA-MVVSSE--LVYL-GCKGGTVEIWDQKR 907 (949)
Q Consensus 849 ~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~-l~~s~d--~l~s-gs~dg~I~vwd~~~ 907 (949)
.+++.+..-. .|-|+|-..++.+..+.. ...|.+ ..|+|- .+++ |+..|.|+||--+.
T Consensus 433 ~li~vg~~~r-~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 433 NLIVVGRYPR-PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cEEEEeccCc-ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 9999987764 899999999998877653 234444 356775 3455 45678899886543
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.4e-14 Score=137.77 Aligned_cols=236 Identities=21% Similarity=0.279 Sum_probs=171.1
Q ss_pred eEEEEEeCC--EEEEEeCCCcEEEEecCCC--------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 671 VLSIACFRD--KIFSGHSDGTIKVWTGRGS--------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 671 V~~l~~s~d--~lasgs~Dg~I~vWd~~t~--------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
|.+-+++|. +|+.|..+|+|-+..+.+- ....+...++|.++|+.++|+ ..+|++|+. |.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeeh
Confidence 445567774 9999999999999987631 114556678999999999998 346777665 999999887
Q ss_pred CCee--EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CEEEEEECCCcEEEEE
Q 002234 741 NEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEID 816 (949)
Q Consensus 741 ~~~~--~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd 816 (949)
.... .+....+...+...-. -.-..|+++...| +.++.++.|+.++-||
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~---------------------------~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDA---------------------------VEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred hhhhhccchhhhhhcCccccCc---------------------------ccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 6420 1111111000000000 0012344555543 5677888999999999
Q ss_pred CCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---C--------CCcEEEEE
Q 002234 817 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T--------LSEVRAMV 885 (949)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~--------~~~v~~l~ 885 (949)
+++|+.. +.+.||++.|.++........+.+++.|| ++|+||.++++.+..+. + ...|-+++
T Consensus 143 lE~G~i~------r~~rGHtDYvH~vv~R~~~~qilsG~EDG-tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 143 LEDGRIQ------REYRGHTDYVHSVVGRNANGQILSGAEDG-TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred ecCCEEE------EEEcCCcceeeeeeecccCcceeecCCCc-cEEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence 9999987 67889999999999966666778999997 99999999999888775 1 35688999
Q ss_pred EcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 886 VSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 886 ~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+.|.+++|+.- .+.+|++++.++...+. -..++..+.|.. +.+++++..+.|.-|.+
T Consensus 216 ~~edWlvCGgGp-~lslwhLrsse~t~vfp--ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 216 VNEDWLVCGGGP-KLSLWHLRSSESTCVFP--IPARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccCceEEecCCC-ceeEEeccCCCceEEEe--cccceeEeeeec--ceEEEeccccceeeeee
Confidence 999999988754 68999999999888884 445688888863 46777777777777764
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=3.7e-14 Score=141.55 Aligned_cols=259 Identities=19% Similarity=0.218 Sum_probs=180.7
Q ss_pred CCCeEEEecCC-----ceeeecCCCCceEEEEEeC-C--EEEEEeCC-------CcEEEEecCCCc-------eeeeEEe
Q 002234 649 DSSADFWNHRE-----LVHVDSSENGKVLSIACFR-D--KIFSGHSD-------GTIKVWTGRGSI-------LHLIQQI 706 (949)
Q Consensus 649 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~~s~-d--~lasgs~D-------g~I~vWd~~t~~-------~~~i~~l 706 (949)
|+.|.+.+++. .-.++..|.+.|+.++-+| + .|+|...| ..+.||.+.... ++++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 56777766652 2356778899999999998 3 66666542 247799886431 2344444
Q ss_pred c-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee-----cCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 707 R-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-----DIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 707 ~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
. .|-+.|.|+.|.|++..+++-. |..|.+|++..+........ ++.....+-. |+|.-
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~-------WspHH-------- 182 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA-------WSPHH-------- 182 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc-------cCCCC--------
Confidence 4 5667999999999999998877 77899999988742111111 0111111111 33311
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
++..+....|+++..||+++.+... ..-..|...|..+.|+|+..+....+.|++.
T Consensus 183 -------------------dgnqv~tt~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 183 -------------------DGNQVATTSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred -------------------ccceEEEeCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 1235566789999999999887664 2335688899999999987765444445459
Q ss_pred EEEEECCCC-eeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCC---------------------------
Q 002234 861 VKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ--------------------------- 908 (949)
Q Consensus 861 I~iwd~~~~-~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~--------------------------- 908 (949)
|++||.++. .++..+. |...|+++.|+|. .+.+|+.|..|.+|...+-
T Consensus 239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 999999864 4677777 7789999999986 7999999999999975321
Q ss_pred --cEEEEeccccccceeEEEEeCCCC-EEEEEeCCCcEEEEeC
Q 002234 909 --IRIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 909 --~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I~iWdl 948 (949)
..+.++ ..|.+.|.+++||.-.. .+++-+.||++.|=.+
T Consensus 319 ~dg~l~ty-dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 319 QDGQLETY-DEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccc-cccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 023345 46889999999987555 5567799999877443
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=158.44 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=194.6
Q ss_pred hhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
.+.-..+.+||+.++.+..| .+-+||+. +..+.+.+|.+.|+|++|+.| .++||+.|..|.+|...-. -+..
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee
Confidence 34456788899988777554 57789998 578899999999999999997 9999999999999987643 2233
Q ss_pred ecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 706 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 706 l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
+ .|++.|.|+.|+|-...|+|++-.. .-+|..... .+..+.....+.+.+ |..||++++.+..+|++.
T Consensus 90 Y-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK---~V~K~kss~R~~~Cs-------WtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 90 Y-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQK---SVSKHKSSSRIICCS-------WTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred e-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhh---hHHhhhhheeEEEee-------ecCCCcEEEEeccCceEE
Confidence 3 6999999999999999999998753 668988763 222233334455554 999999999999999998
Q ss_pred Eec--------------CCCCceEEEEeCC-------EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE
Q 002234 786 LLN--------------SSKYPKCLALVQG-------KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 844 (949)
Q Consensus 786 ~~~--------------~~~~v~~v~~~~~-------~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 844 (949)
+-+ .+.+|.+++++++ .+++.....++..|.+. |+.+. +-..-.-...|+.+
T Consensus 158 iRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Ig------k~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 158 IRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIG------KDRALNFDPCCISY 230 (1081)
T ss_pred eecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeec------ccccCCCCchhhee
Confidence 765 2457899999852 37777777888887765 33331 11112234668999
Q ss_pred eCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 845 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 845 ~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
.++|.|+..|+.|+ .+++|. +.|-.+.++. ...+|+.++..|+ +++.|+.||+|-.|++-
T Consensus 231 f~NGEy~LiGGsdk-~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDK-QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCcEEEEccCCC-ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999986 888885 4566677766 5789999999999 89999999999999863
No 182
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.62 E-value=4.3e-16 Score=127.13 Aligned_cols=63 Identities=44% Similarity=0.876 Sum_probs=59.3
Q ss_pred cccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 002234 18 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 82 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~ 82 (949)
+|.||||+++|+|||+++|||+||+.||.+|+.. +..||.|+++++..+++ ||..|++.|+.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~-~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLI-PNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhce-eCHHHHHHHHhC
Confidence 5889999999999999999999999999999987 56899999999999996 999999999987
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.61 E-value=3.2e-14 Score=147.66 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=151.6
Q ss_pred ccccccEEEEecCCCCeEEEecC---------CceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCceeee
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
-.|+...|++||.|.+|.||... ..+..+.+|...|.-|+|+| |.|+|++.|.+|.+||+.+| ..+
T Consensus 90 ~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg--eal 167 (472)
T KOG0303|consen 90 CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG--EAL 167 (472)
T ss_pred CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC--cee
Confidence 34567799999999999999875 35667889999999999999 59999999999999999999 667
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
.++. |.+-|+++.|+.||.+|+|++.|+.|||||.++++..... ..|.+.- +....|..+|. +++...
T Consensus 168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k------~~Raifl~~g~-i~tTGf--- 235 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAK------PARAIFLASGK-IFTTGF--- 235 (472)
T ss_pred eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCC------cceeEEeccCc-eeeecc---
Confidence 7776 9999999999999999999999999999999999643333 2222211 11223666666 222211
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+-..+..+-+||..+-+....+ .-...++.|.---+++|...+..++..++.|+.
T Consensus 236 ---------------------sr~seRq~aLwdp~nl~eP~~~----~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 236 ---------------------SRMSERQIALWDPNNLEEPIAL----QELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred ---------------------ccccccceeccCcccccCccee----EEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 2245677888887654432111 111223445444556777666666655569999
Q ss_pred EECCCCee----EEeecCCCcEEEEEEcCC
Q 002234 864 WSTSNYNM----VGSLPTLSEVRAMVVSSE 889 (949)
Q Consensus 864 wd~~~~~~----~~~~~~~~~v~~l~~s~d 889 (949)
|.+.+..+ +.+|....+-..+.|-|.
T Consensus 291 yEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 291 FEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecCCCceeEEecccccCCcccccccccc
Confidence 99987553 334445556666666665
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=5.1e-13 Score=138.31 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=170.2
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEE--eCCCEEEEEEecCeEE--
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI--PQGAGIKVHLRNGKTK-- 785 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fs--p~g~~l~~~~~~g~i~-- 785 (949)
...+..+.|+.++..|..|+.|| .+++....-. ++.........|..+-++.+.+++. ++++.+.+........
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 45677778999999999999998 6788776543 2222222333444444444444432 2333333333222221
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE-ECCCCEEEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDGAAVKMW 864 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~Dg~~I~iw 864 (949)
-..-...|.++.++..++++.-.+. |+|||+++.+.+.... ....+...+.++.+++++.|++-- +.+.+.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~---t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIE---TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhh---ccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 2223567788888888888776655 9999999988874432 233456678888888877777653 3333599999
Q ss_pred ECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCe-EEEEECCCCcEEEEeccccc-cceeEEEEeCCCCEEEEEeC
Q 002234 865 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGT-VEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 865 d~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~-I~vwd~~~~~~~~~l~~~h~-~~I~~l~~spdg~~L~sgs~ 939 (949)
|+.+-+++..+. |.+.+-+++|+++ ++|++|+.|+ ||||.+.+|+.+..|+.|.. -.|.+++|+||+++|++.|+
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999998 9999999999999 8999999986 79999999999999976543 37899999999999999999
Q ss_pred CCcEEEEeCC
Q 002234 940 DGRIQAWGLS 949 (949)
Q Consensus 940 Dg~I~iWdl~ 949 (949)
.++|+||.++
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 9999999874
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=2e-13 Score=159.44 Aligned_cols=254 Identities=19% Similarity=0.239 Sum_probs=181.8
Q ss_pred EecC-CceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCC-----CceeeeEEecccCCCEEEEEEecCCCEE
Q 002234 655 WNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-----SILHLIQQIREHTKAVTGLAILQSGEML 725 (949)
Q Consensus 655 Wd~~-~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t-----~~~~~i~~l~~H~~~V~~v~fspdg~~L 725 (949)
|+++ ..+..+..|...|..++.+++ +++|||.||+|++||... +..+...++..-.+++.++.+.+.|+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 7777 456778889999999999874 999999999999999863 2234555555567889999999999999
Q ss_pred EEEeCCCcEEEEECCCCe---eEEEEe--e--cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEE
Q 002234 726 YSGSLDKTARVWSIGNEE---IHCVQV--H--DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 798 (949)
Q Consensus 726 ~Sgs~Dg~I~vWd~~~~~---~~~~~~--~--~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~ 798 (949)
|.++.||.|++.+++... ...... . ...+.+.++ -++
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m------------------------------------~a~ 1157 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM------------------------------------HAF 1157 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe------------------------------------ecc
Confidence 999999999999988721 000000 0 011111111 111
Q ss_pred e---CC-EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEe
Q 002234 799 V---QG-KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 874 (949)
Q Consensus 799 ~---~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~ 874 (949)
. .. .++.+...+.|..||+++....... +.....+.|++++.+|.+.+++.|+..| .+.+||++-+.++..
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l----k~~~~hG~vTSi~idp~~~WlviGts~G-~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL----KNQLRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWDLRFRVPILS 1232 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhh----hcCccccceeEEEecCCceEEEEecCCc-eEEEEEeecCceeec
Confidence 1 12 4778888999999999987665432 2333457899999999999999999887 999999999988888
Q ss_pred ec--CCCcEEEEEEcCC-----E-EEEEE-CCCeEEEEECCCCcEEEEecccccc------------------ceeEEEE
Q 002234 875 LP--TLSEVRAMVVSSE-----L-VYLGC-KGGTVEIWDQKRQIRIETLQTGTSG------------------KVQCMAL 927 (949)
Q Consensus 875 ~~--~~~~v~~l~~s~d-----~-l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~------------------~I~~l~~ 927 (949)
+. +..++..+..+|- . +.+|+ ..+.|.+|++.+|..-.++..+... ......+
T Consensus 1233 w~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1233 WEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred ccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec
Confidence 77 4567777776643 3 44444 6789999999999877777533110 1112223
Q ss_pred eCCCCEEEEEeCCCcEEEEeCC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
..-+.++.+|++|+.|+.||.+
T Consensus 1313 ~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ccCCceeeecCCccceeeccCC
Confidence 2335689999999999999964
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=1.8e-13 Score=136.88 Aligned_cols=239 Identities=15% Similarity=0.226 Sum_probs=176.3
Q ss_pred cCCCCceEEEEEeCC-------EEEEEeCCCcEEEEecCC--CceeeeEEe-----cccCCCEEEEEEec-CCCEEEEEe
Q 002234 665 SSENGKVLSIACFRD-------KIFSGHSDGTIKVWTGRG--SILHLIQQI-----REHTKAVTGLAILQ-SGEMLYSGS 729 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d-------~lasgs~Dg~I~vWd~~t--~~~~~i~~l-----~~H~~~V~~v~fsp-dg~~L~Sgs 729 (949)
..|.-+++.+.|.|+ +|||.+. .+|+|.+.. ....+...+ ..|..++++..|+. |.+++.+.|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 578899999999985 5666553 699999873 322222222 34677899999998 889999999
Q ss_pred CCCcEEEEECCCCee--EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE
Q 002234 730 LDKTARVWSIGNEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 807 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs 807 (949)
-|-|..|||++++.. ...+...|...|..++ |...|.. .+++.+
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa-------f~~~s~~---------------------------~FASvg 216 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA-------FLKGSRD---------------------------VFASVG 216 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEE-------eccCccc---------------------------eEEEec
Confidence 999999999999732 2344456777787777 6655443 488999
Q ss_pred CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe-CCceEEEEEECCCCEEEEEECCCC-eeEEeec-CCCcEEEE
Q 002234 808 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAM 884 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l 884 (949)
.||++++||++.-..-.+.- .-.....+...++|+ .|-.|+++...|...|.|-|++.. .++..+. |...|+.+
T Consensus 217 aDGSvRmFDLR~leHSTIIY---E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI 293 (364)
T KOG0290|consen 217 ADGSVRMFDLRSLEHSTIIY---EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGI 293 (364)
T ss_pred CCCcEEEEEecccccceEEe---cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccce
Confidence 99999999999766443211 011124678889997 467788998888889999999864 5666776 88999999
Q ss_pred EEcCC---EEEEEECCCeEEEEECCCCc------EEEEeccccccceeEEEEeC-CCCEEEEEeCCCcEEE
Q 002234 885 VVSSE---LVYLGCKGGTVEIWDQKRQI------RIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQA 945 (949)
Q Consensus 885 ~~s~d---~l~sgs~dg~I~vwd~~~~~------~~~~l~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~i 945 (949)
+|.|. .+.++++|..+.+||+.+.- ++..+. ..+.|+.+.|++ .+.+++.+. ++++.+
T Consensus 294 aWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 294 AWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99887 89999999999999997532 233332 345799999996 456777665 445544
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=133.13 Aligned_cols=303 Identities=14% Similarity=0.120 Sum_probs=207.8
Q ss_pred ccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
.++.++++|+++++.+.. .+.|-|..+ ..+.+ .--+.|.-+.|.-| .|.....|+.|.+|++... +-...+
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckI 87 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKI 87 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEe
Confidence 377889999999998776 555666653 12221 12456777888876 6677788999999999988 556677
Q ss_pred cccCCCEEEEEEecCCCE-EEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeecc----------------------
Q 002234 707 REHTKAVTGLAILQSGEM-LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN---------------------- 763 (949)
Q Consensus 707 ~~H~~~V~~v~fspdg~~-L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~---------------------- 763 (949)
.....++.++.|||||+. |.+...|-.|.||.+.+.+...+.-. +..+..+++++
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 788899999999999965 55666799999999998753222222 22233333111
Q ss_pred ----------------ceEEEEeCCCEEEEEEec--CeEEEecCCCCceEEEEeC-C-EEEEEECCCcEEEEECCCCcee
Q 002234 764 ----------------SILCFIPQGAGIKVHLRN--GKTKLLNSSKYPKCLALVQ-G-KVYCGCQDGAIQEIDLATGTFA 823 (949)
Q Consensus 764 ----------------~~~~fsp~g~~l~~~~~~--g~i~~~~~~~~v~~v~~~~-~-~l~sgs~Dg~I~iwd~~~~~~~ 823 (949)
..+-|+|||..+++...- -.+..+.-+-.+..+.++| + .+++|+.|+.+++.+--+-+..
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 134466666666554432 2223444556788888887 4 4899999999887543211110
Q ss_pred ee-------------------------------e-----------------------------cccccccCCCCCEEEEE
Q 002234 824 TI-------------------------------Q-----------------------------TGHRKLLGKANPVHALQ 843 (949)
Q Consensus 824 ~~-------------------------------~-----------------------------~~~~~~~~h~~~V~~l~ 843 (949)
.. + .+...+......+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 00 0 00001112234577899
Q ss_pred EeCCceEEEEEECC-CCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccccc
Q 002234 844 VHNGLVYTASTSLD-GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG 920 (949)
Q Consensus 844 ~~~~~~~l~s~s~D-g~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~ 920 (949)
|++|..|+++-... -+.+-+||+++.+....+....+|....|+|. .++.+.....+++|.......+..-..| -
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~G--F 403 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKG--F 403 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCC--c
Confidence 99999999886421 14799999998887777777889999999998 6777777778999998776666655433 4
Q ss_pred ceeEEEEeCCCCEEEEEeCCCc
Q 002234 921 KVQCMALDDNEEFLVIGTSDGR 942 (949)
Q Consensus 921 ~I~~l~~spdg~~L~sgs~Dg~ 942 (949)
.|..+.|.-+|..++..+.|.-
T Consensus 404 ~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecCCCcEEEEEcCCce
Confidence 7999999999999999998853
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=3.8e-13 Score=136.45 Aligned_cols=244 Identities=17% Similarity=0.256 Sum_probs=172.4
Q ss_pred eEEEEEeCC--EEEEEeCCCcEEEEecCCCc----------eeeeEEec-ccCCCEEEEEEe-------cCCCEEEEEeC
Q 002234 671 VLSIACFRD--KIFSGHSDGTIKVWTGRGSI----------LHLIQQIR-EHTKAVTGLAIL-------QSGEMLYSGSL 730 (949)
Q Consensus 671 V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~----------~~~i~~l~-~H~~~V~~v~fs-------pdg~~L~Sgs~ 730 (949)
.....|+|| .|.+-+.|..+++|++...- .....++. .....|..-+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456789998 89999999999999876320 00011111 123457777775 67789999999
Q ss_pred CCcEEEEECCCCeeEEE-EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC
Q 002234 731 DKTARVWSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 809 (949)
Q Consensus 731 Dg~I~vWd~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D 809 (949)
|.-|++||.-+|++++. ...+|.+.+... ..++|+|||..+ + ++..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taA----hsL~Fs~DGeql----------------------------f-aGyk 178 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAA----HSLQFSPDGEQL----------------------------F-AGYK 178 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhh----eeEEecCCCCeE----------------------------e-eccc
Confidence 99999999999985443 333444444322 234599999863 3 4466
Q ss_pred CcEEEEEC-CCCceeeeeccc-ccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEE
Q 002234 810 GAIQEIDL-ATGTFATIQTGH-RKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMV 885 (949)
Q Consensus 810 g~I~iwd~-~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 885 (949)
..|++||+ +.|..-..+... +.-.+..+-+.+++|+|-.. .++.++.. .++-||.-..+.++..+. |.+.|+.+.
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecCCCCceeeecccCCCeeeEE
Confidence 78999998 555433222211 11234567899999998655 66776655 589999888888888877 789999999
Q ss_pred EcCC--EEEEEE-CCCeEEEEECCC-CcEEEEecccccc-ceeEEEE--eCCCCEEEEEeCCCcEEEEeCC
Q 002234 886 VSSE--LVYLGC-KGGTVEIWDQKR-QIRIETLQTGTSG-KVQCMAL--DDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 886 ~s~d--~l~sgs-~dg~I~vwd~~~-~~~~~~l~~~h~~-~I~~l~~--spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|.++ .+++|+ .|-.|..||++. ..++..+. .|.+ .-..|-| .|+|++|++|+.||.|++||+.
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 9988 688876 477899999986 45666674 5554 3344444 6889999999999999999974
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=6.5e-14 Score=147.55 Aligned_cols=194 Identities=20% Similarity=0.286 Sum_probs=150.5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCc
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 793 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v 793 (949)
..++|+.+|..+++|+.||++|||++.... .......|...|.++. |+|||+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~-------FS~dgk~------------------- 200 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLD-------FSPDGKF------------------- 200 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccce-------eCCCCcE-------------------
Confidence 779999999999999999999999977653 4455567788999998 9999986
Q ss_pred eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc----eEEEEEECCCCEEEEEECCCC
Q 002234 794 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----VYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 794 ~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
|++-+.| ..++|+..++..+....+ .+.......+.|..+. .++++.-.+++.|+.||+...
T Consensus 201 ---------lasig~d-~~~VW~~~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 201 ---------LASIGAD-SARVWSVNTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred ---------EEEecCC-ceEEEEeccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 6666777 889999999976643321 2223345566666444 344444444457888776543
Q ss_pred ee------EEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 870 NM------VGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 870 ~~------~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
.. .+.+.....|.++++++| +++.|+.||.|-|++..+.+.++-.+..|...|+.+.|+||.+++++.+.|.
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 22 112224568999999998 8999999999999999999999999889999999999999999999999998
Q ss_pred cEEEEeC
Q 002234 942 RIQAWGL 948 (949)
Q Consensus 942 ~I~iWdl 948 (949)
.+.|..+
T Consensus 347 ~~~v~~l 353 (398)
T KOG0771|consen 347 EAAVTKL 353 (398)
T ss_pred ceeEEEE
Confidence 8887654
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3e-13 Score=155.81 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=157.5
Q ss_pred CCCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCC---CcEEEEecCCCceeeeEEecccCCCEEEEEEecCC
Q 002234 649 DSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 722 (949)
Q Consensus 649 dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg 722 (949)
+..|.+||.+. ..+.+..|...+.+..|+|| .|+.++.+ ..|++||+.++..+.+..+.+|. ..++|+|||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCC
Confidence 47899999873 35566778889999999997 67766543 46999999988544555555554 367999999
Q ss_pred CEEEEEe-CCCcEEEE--ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe
Q 002234 723 EMLYSGS-LDKTARVW--SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 799 (949)
Q Consensus 723 ~~L~Sgs-~Dg~I~vW--d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~ 799 (949)
+.|+.++ .||.+.|| |+.++....+. .+...+.... |+|||+.+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt--~~~~~~~~~~-------wSpDG~~i------------------------ 306 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLT--SGAGNNTEPS-------WSPDGQSI------------------------ 306 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeec--cCCCCcCCEE-------ECCCCCEE------------------------
Confidence 9888765 68876655 66666433332 2233333444 99999864
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCC
Q 002234 800 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 879 (949)
Q Consensus 800 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~ 879 (949)
++++..+|..++|++....... ..+ ++.. ....|+|++.+++..+.+ .+.+||+.++........ .
T Consensus 307 ---~f~s~~~g~~~I~~~~~~~~~~-----~~l-~~~~--~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g~~~~lt~~-~ 372 (429)
T PRK01742 307 ---LFTSDRSGSPQVYRMSASGGGA-----SLV-GGRG--YSAQISADGKTLVMINGD--NVVKQDLTSGSTEVLSST-F 372 (429)
T ss_pred ---EEEECCCCCceEEEEECCCCCe-----EEe-cCCC--CCccCCCCCCEEEEEcCC--CEEEEECCCCCeEEecCC-C
Confidence 3334456777888764322111 111 2222 356799999998887765 466699988875433222 2
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEEC--CCCcEEEEeccccccceeEEEEeCC
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQ--KRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~--~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
....+.|+|| .++.++.+|.+.+|++ .+|.....+ .+|.+.+...+|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCCCCCCCCcccCCC
Confidence 3456789999 7888888888888875 357778888 478888999999984
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.54 E-value=1.5e-13 Score=147.39 Aligned_cols=206 Identities=18% Similarity=0.246 Sum_probs=156.7
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceee
Q 002234 679 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 758 (949)
Q Consensus 679 d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~ 758 (949)
|.++.++.||.+.+-+-.. +.-+.+..|.+.|.+-.|+|||.-|+|++.||.|++|.-... ..........+|.+
T Consensus 76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEE
Confidence 4888999999999987654 466778899999999999999999999999999999986543 22222344667888
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
++ |.|++..+ +++. .+.+.+=-+.....+ .++..|.+-
T Consensus 151 ~~-------W~p~S~~v---------------------------l~c~--g~h~~IKpL~~n~k~------i~WkAHDGi 188 (737)
T KOG1524|consen 151 AR-------WAPNSNSI---------------------------VFCQ--GGHISIKPLAANSKI------IRWRAHDGL 188 (737)
T ss_pred EE-------ECCCCCce---------------------------EEec--CCeEEEeecccccce------eEEeccCcE
Confidence 77 77766543 3332 344444444433333 467789999
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCE-EEEEECCCeEEEEECCCCcEEEEeccc
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL-VYLGCKGGTVEIWDQKRQIRIETLQTG 917 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~-l~sgs~dg~I~vwd~~~~~~~~~l~~~ 917 (949)
|.++.|++....+++++.|- ..++||-.......+-.|..+|++++|+||. ++.+| -++.+ +...
T Consensus 189 iL~~~W~~~s~lI~sgGED~-kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R------------~~~p 254 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDF-RFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS-YNTAR------------FSSP 254 (737)
T ss_pred EEEeecCccccceeecCCce-eEEeecccCcccccCChhccceeeeeeccccceeeee-eeeee------------ecCC
Confidence 99999999999999999985 9999998766665666689999999999994 44444 33444 4345
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 918 TSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 918 h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
..+.|..++||+||..++.|+..|.+.+
T Consensus 255 ~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 255 RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CccceEEEEEcCCCceeeccccCceEEE
Confidence 6678999999999999999999998754
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=3e-12 Score=142.79 Aligned_cols=229 Identities=13% Similarity=0.154 Sum_probs=150.9
Q ss_pred EEEEeCCCcEEEEecCC-CceeeeEEecccCCCEEEEEEecCCCEEEEEe-CCCcEEEEECC-CCeeEEEEeecCCCcee
Q 002234 681 IFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIG-NEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 681 lasgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~-~~~~~~~~~~~~~~~v~ 757 (949)
+++...|+.|++||+.+ ++...+..+. +.+....++++|++++|+.++ .++.|.+|+++ ++.+.............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44557799999999974 5445666664 446677899999999987765 48899999997 34433333332222233
Q ss_pred eeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc-eeeeecccccccCCC
Q 002234 758 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKA 836 (949)
Q Consensus 758 ~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~~~~h~ 836 (949)
. ++|+|+|+.+. ++...++.|.+||+.+.. ..... ..+ .+.
T Consensus 84 ~-------i~~~~~g~~l~---------------------------v~~~~~~~v~v~~~~~~g~~~~~~---~~~-~~~ 125 (330)
T PRK11028 84 H-------ISTDHQGRFLF---------------------------SASYNANCVSVSPLDKDGIPVAPI---QII-EGL 125 (330)
T ss_pred E-------EEECCCCCEEE---------------------------EEEcCCCeEEEEEECCCCCCCCce---eec-cCC
Confidence 3 44888888642 223347889999986432 21110 111 122
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE-------eecCCCcEEEEEEcCC--EEEEEEC-CCeEEEEECC
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-------SLPTLSEVRAMVVSSE--LVYLGCK-GGTVEIWDQK 906 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~-------~~~~~~~v~~l~~s~d--~l~sgs~-dg~I~vwd~~ 906 (949)
.....++++|++.++.+.+.+++.|.+||+.+...+. ..........+.|+|| ++++++. +++|.+||++
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 3467788999998887766655699999997633221 2223456778999999 7777765 8999999997
Q ss_pred C--Cc--EEEEecc--c---cccceeEEEEeCCCCEEEEEeC-CCcEEEEeC
Q 002234 907 R--QI--RIETLQT--G---TSGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 948 (949)
Q Consensus 907 ~--~~--~~~~l~~--~---h~~~I~~l~~spdg~~L~sgs~-Dg~I~iWdl 948 (949)
. ++ .+..+.. . +......+.|+|||++++++.. +++|.+|++
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 3 32 3444321 0 1112346889999999999864 789999986
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.1e-13 Score=154.41 Aligned_cols=260 Identities=14% Similarity=0.236 Sum_probs=176.8
Q ss_pred CCCCeEEEecCCceeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeeeEEeccc---CCCEEEEEEec--
Q 002234 648 HDSSADFWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREH---TKAVTGLAILQ-- 720 (949)
Q Consensus 648 ~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H---~~~V~~v~fsp-- 720 (949)
.+..|..||.. ...+...+...+.|+| +.+++++..-+|+|||.+.+ +.+..|..+ ...|+.+.+-.
T Consensus 1048 st~~i~~W~~~----~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1048 STNPIGNWDQK----FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred ccccccchHHH----HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeeccc
Confidence 34456677764 2334444667788888 48888888889999999998 677766544 35688888866
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe---eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEE
Q 002234 721 SGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 797 (949)
Q Consensus 721 dg~~L~Sgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~ 797 (949)
|..++++|+.||.||||+--... .+.+... ..+.++. ..+.|.. .-+.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw---~~Ls~~~-------~~~r~~~-------------------~v~d 1172 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAW---SSLSDQL-------PGARGTG-------------------LVVD 1172 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEee---ccccccC-------ccCCCCC-------------------eeee
Confidence 56789999999999999743321 1111111 0011111 1111111 1112
Q ss_pred Ee--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe-CCceEEEEEECCCCEEEEEECCCCe---e
Q 002234 798 LV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN---M 871 (949)
Q Consensus 798 ~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~Dg~~I~iwd~~~~~---~ 871 (949)
+. .|+|++++.-..|+|||......... ...+....|+++.-+ ..+..++.|..|| .|++||.+... .
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d-----iP~~s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVAD-----IPYGSSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPDSL 1246 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEee-----cccCCCccceeecccccCCceEEEeecCC-ceEEeecccCCcccc
Confidence 22 36788888899999999998776642 223345678888775 4568888888887 99999998643 3
Q ss_pred EEeec-CCCc--EEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEec-ccc---ccceeEEEEeCCCCEEEEEeCCC
Q 002234 872 VGSLP-TLSE--VRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-TGT---SGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 872 ~~~~~-~~~~--v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~-~~h---~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
+.... |... |..+.+.+. .+++|+.||.|++||++.......+. ..| .+..+++..+++...+|+|+. +
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence 34443 5555 888888875 59999999999999998742221111 122 235999999999999999998 9
Q ss_pred cEEEEeCC
Q 002234 942 RIQAWGLS 949 (949)
Q Consensus 942 ~I~iWdl~ 949 (949)
.|+||+++
T Consensus 1326 ~ikIy~~~ 1333 (1387)
T KOG1517|consen 1326 LIKIYSLS 1333 (1387)
T ss_pred eEEEEecC
Confidence 99999974
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=5.4e-13 Score=133.54 Aligned_cols=242 Identities=15% Similarity=0.169 Sum_probs=169.3
Q ss_pred CceEEEEEeC----C-EEEEEeC----CCcEEEEecC--CCceeeeEEecccCCCEEEEEEecCC-----CEEEEEeCCC
Q 002234 669 GKVLSIACFR----D-KIFSGHS----DGTIKVWTGR--GSILHLIQQIREHTKAVTGLAILQSG-----EMLYSGSLDK 732 (949)
Q Consensus 669 ~~V~~l~~s~----d-~lasgs~----Dg~I~vWd~~--t~~~~~i~~l~~H~~~V~~v~fspdg-----~~L~Sgs~Dg 732 (949)
-.++++.|+. + +|+.|+. .+.|.|-.+. +++.....+ ..|.-+++.+-|.|+. ++|||.|.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcccC--
Confidence 4567888883 2 8888873 4566665443 443333333 3689999999999975 35666543
Q ss_pred cEEEEECCCCe--eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe---CCEEEEEE
Q 002234 733 TARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGC 807 (949)
Q Consensus 733 ~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~---~~~l~sgs 807 (949)
.+|+|.+...+ ....... +.+. --.....++++.++ ++.+.+++
T Consensus 122 ~LRlWri~~ee~~~~~~~~L------------------~~~k-------------ns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVL------------------NNNK-------------NSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred eEEEEeccCcCCceehhhhh------------------ccCc-------------ccccCCcccccccccCCcceeEeec
Confidence 69999998532 1111100 0000 00112334444443 56799999
Q ss_pred CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeec---C-CCcEE
Q 002234 808 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T-LSEVR 882 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~-~~~v~ 882 (949)
-|-+..+||+.++....+ ...+..|...|+.++|.. ....+++.+.|| .+|+||++....-..+. . ..+..
T Consensus 171 iDTTCTiWdie~~~~~~v---kTQLIAHDKEV~DIaf~~~s~~~FASvgaDG-SvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTV---KTQLIAHDKEVYDIAFLKGSRDVFASVGADG-SVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred ccCeEEEEEEeeccccce---eeEEEecCcceeEEEeccCccceEEEecCCC-cEEEEEecccccceEEecCCCCCCcce
Confidence 999999999999733111 156789999999999986 456788999997 99999998755433332 2 56788
Q ss_pred EEEEcCC---EEEEEEC-CCeEEEEECCCC-cEEEEeccccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCC
Q 002234 883 AMVVSSE---LVYLGCK-GGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 883 ~l~~s~d---~l~sgs~-dg~I~vwd~~~~-~~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl~ 949 (949)
.++|++. ++++-.. ...|.|.|++.. .++..+ .+|.+.|++++|.|.. ..|.|+|+|..+.+||+.
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-hcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 8888754 7777544 467999999875 467777 5999999999999975 789999999999999984
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6.2e-14 Score=149.31 Aligned_cols=285 Identities=14% Similarity=0.130 Sum_probs=201.1
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecCC---ceeeecCCCCceEEEEEeCC----EEEEEeCCCcEEEEecC-CC
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGR-GS 698 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~-t~ 698 (949)
|...+...-|..+|..+++||.|..|.+||+.. ......+|...|..-.|-|. .+++++.||.|++=.+. ++
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 334445555666899999999999999999974 44556688888988888883 89999999999998765 33
Q ss_pred ceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEE-eecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
...-...+..|.++|..++.-|+ ...|.|++.|+.+.-.|++++...... ....+.+ ..
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-~~------------------ 281 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-ER------------------ 281 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc-cc------------------
Confidence 22335566789999999999995 567999999999999999886411111 1111100 00
Q ss_pred EEEecCeEEEecCCCCceEEEEeC---CEEEEEECCCcEEEEECCCCcee------eeecccccccCCCCCEEEEEEe-C
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFA------TIQTGHRKLLGKANPVHALQVH-N 846 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~------~~~~~~~~~~~h~~~V~~l~~~-~ 846 (949)
+ ....++..+ +.+++|+.|-.+++||.+.-... ..+.++.-.......|++++|+ .
T Consensus 282 -------v-------~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 282 -------V-------GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred -------e-------eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 0 111223332 45899999999999998753322 1122211222334579999998 6
Q ss_pred CceEEEEEECCCCEEEEEECCC--C----------eeEEe-ec-C--CCcEEEEEEcC-C--EEEEEECCCeEEEEECCC
Q 002234 847 GLVYTASTSLDGAAVKMWSTSN--Y----------NMVGS-LP-T--LSEVRAMVVSS-E--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 847 ~~~~l~s~s~Dg~~I~iwd~~~--~----------~~~~~-~~-~--~~~v~~l~~s~-d--~l~sgs~dg~I~vwd~~~ 907 (949)
.+.++++.... .|.++.-.. | ..++. ++ | ...|..+-|-+ . |+++|+.-|.|.||+..+
T Consensus 348 ~sElLaSYnDe--~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 348 GSELLASYNDE--DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ccceeeeeccc--ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 66677776533 688885432 2 12222 33 2 34577787754 3 999999999999999999
Q ss_pred CcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 908 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 908 ~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++.+..+...+ ..|+|+.-+|--..||+.|-|.-||||-
T Consensus 426 ~eii~~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 426 GEIIRFMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred hHHHHHhhccc-ceEeccCCCCCCchhhccCCccceeeec
Confidence 99998886444 4899999999999999999999999995
No 196
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=2.9e-13 Score=171.56 Aligned_cols=314 Identities=13% Similarity=0.122 Sum_probs=225.8
Q ss_pred hhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHH
Q 002234 137 LNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVER 216 (949)
Q Consensus 137 l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~ 216 (949)
.+.+++++..+.-+... +......+...+.+..|+++|..+ +.++++.++..|.+++..++.++..|+ ..|++++
T Consensus 418 ~evQ~~Av~aL~~L~~~---~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIi-eaGaIP~ 492 (2102)
T PLN03200 418 ADVQEELIRALSSLCCG---KGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAIT-AAGGIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHHhCC---CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHH
Confidence 34466666555554433 333334455666677788888874 678899999999999777777788888 6899999
Q ss_pred HHHHHhhC----hhhHHHHHHhcCCChHHHHH----hhhhHHHHHHHHhccccchhcccCchhhHHHHHH----------
Q 002234 217 IVALFKKG----LLEAVVLIDLLRPSTRTLIE----MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLG---------- 278 (949)
Q Consensus 217 l~~llk~g----~~~Aa~~l~~L~~~~~~~~~----~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~---------- 278 (949)
|+.+|+.+ +.+|+.+|.+|.-..+|+.. .+.+|+|+++|++|+... + ..-+.+++.+-
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~-q---~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG-Q---EIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH-H---HHHHHHHHHHHhccchhHHHH
Confidence 99999887 78999999999865554322 355699999999984321 0 00011111110
Q ss_pred --HHhcCCccc----------------ccccchhh-hcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHh
Q 002234 279 --QMIGDSEES----------------IVSSIANT-IVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 339 (949)
Q Consensus 279 --~~~~~~~~~----------------~~~~~~~~-i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~ 339 (949)
.|+.+.+.. ........ +...||++.|++++++|+.+.|..|+.+|.+++..+...+..+.
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 011111100 00000011 22468999999999999999999999999999999989888999
Q ss_pred hhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhh
Q 002234 340 DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQL 419 (949)
Q Consensus 340 ~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l 419 (949)
+.+.++|++.||++++.+.+..|..+|.+|....+. .+. ..+.+.|.+ .+|+.+|.....+....++..|.++
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~---~q~-~~~v~~GaV---~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE---NRK-VSYAAEDAI---KPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH---HHH-HHHHHcCCH---HHHHHHHhCCChHHHHHHHHHHHHH
Confidence 999999999999999999988888888888764332 122 224567888 5599999888888888888888888
Q ss_pred hcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCccccc
Q 002234 420 DLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTT 468 (949)
Q Consensus 420 ~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 468 (949)
-.-.+- +..+-+++++.+|++.|++|+... ++.|+.||..|.-+|+.
T Consensus 722 l~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~-k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 722 LSDPEV-AAEALAEDIILPLTRVLREGTLEG-KRNAARALAQLLKHFPV 768 (2102)
T ss_pred HcCchH-HHHHHhcCcHHHHHHHHHhCChHH-HHHHHHHHHHHHhCCCh
Confidence 443332 333446888999999999999644 77999999999887764
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.51 E-value=5.9e-14 Score=152.75 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=113.5
Q ss_pred cccccccccEEEEecCCCCeEEEecC---------CceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCce
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~ 700 (949)
+.+-.||..+|+.++.||.|++|.+. +...++..|...|+++.|+| |.|+++++|-+|++||+.++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-- 710 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-- 710 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh--
Confidence 44556789999999999999999875 35667889999999999999 69999999999999999999
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
.....+.+|++.|..++|||||+.++|.+.||+|+||..+.++.... +.++++-. -...+.|.-+|+++++.+.
T Consensus 711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~---Eg~gpvgt---RgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY---EGKGPVGT---RGARILWACDGRIVIVVGF 784 (1012)
T ss_pred hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc---cCCCCccC---cceeEEEEecCcEEEEecc
Confidence 77888999999999999999999999999999999999988752222 22233221 1123447778887655544
Q ss_pred c
Q 002234 781 N 781 (949)
Q Consensus 781 ~ 781 (949)
+
T Consensus 785 d 785 (1012)
T KOG1445|consen 785 D 785 (1012)
T ss_pred c
Confidence 4
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=4.1e-13 Score=134.21 Aligned_cols=223 Identities=17% Similarity=0.204 Sum_probs=157.6
Q ss_pred CCCcEEEEecCCCcee-eeEEecccCCCEEEEEEec-CCCEEEEEeCC-------CcEEEEECCCCee-------EEEEe
Q 002234 686 SDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQ-SGEMLYSGSLD-------KTARVWSIGNEEI-------HCVQV 749 (949)
Q Consensus 686 ~Dg~I~vWd~~t~~~~-~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~D-------g~I~vWd~~~~~~-------~~~~~ 749 (949)
.|+.|.+-+++.+.-. .-..|..|.+.|+.++-+| +.+.|+|+..| ..+.||.+..... .++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4677888777654212 2345667899999999999 66777776553 2367898865421 11111
Q ss_pred e--cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCcee-eee
Q 002234 750 H--DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA-TIQ 826 (949)
Q Consensus 750 ~--~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~ 826 (949)
. .+-+.+.++. |.|++.. +++ -.|..|.+|++..+..+ ...
T Consensus 118 Ldteavg~i~cve-------w~Pns~k----------------------------las-m~dn~i~l~~l~ess~~vaev 161 (370)
T KOG1007|consen 118 LDTEAVGKINCVE-------WEPNSDK----------------------------LAS-MDDNNIVLWSLDESSKIVAEV 161 (370)
T ss_pred CCHHHhCceeeEE-------EcCCCCe----------------------------eEE-eccCceEEEEcccCcchheee
Confidence 1 1122344444 5555543 333 34888999999887763 222
Q ss_pred cccccccCCCCCEEEEEEeC--CceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCC---EEEEEECCCe
Q 002234 827 TGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLGCKGGT 899 (949)
Q Consensus 827 ~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d---~l~sgs~dg~ 899 (949)
.. ..-.+|....++-+|+| ++..+++.+ ++++..||+++.++...+. |...|..+.|+|+ ++++|++||.
T Consensus 162 ~s-s~s~e~~~~ftsg~WspHHdgnqv~tt~--d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 162 LS-SESAEMRHSFTSGAWSPHHDGNQVATTS--DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred cc-cccccccceecccccCCCCccceEEEeC--CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 11 12233566778888876 666666664 3599999999998888887 7888999999999 7999999999
Q ss_pred EEEEECCCCc-EEEEeccccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 002234 900 VEIWDQKRQI-RIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 900 I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl 948 (949)
|+|||.+..+ +++++ .+|...|+++.|+|.. +++.+||+|..|.+|..
T Consensus 239 vriWD~R~tk~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred EEEEeccCCCcccccc-CCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 9999998654 77777 5999999999999965 67889999999999853
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.1e-13 Score=143.83 Aligned_cols=201 Identities=19% Similarity=0.259 Sum_probs=142.4
Q ss_pred EEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe
Q 002234 672 LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV 749 (949)
Q Consensus 672 ~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~ 749 (949)
.+++|+++ .+++|+.||++|||+..+. ..+.....|.+.|.+++|+|||+.|++.+.| ..+||++++|.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67888876 9999999999999998877 6777788899999999999999999999999 89999999983111111
Q ss_pred -ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecc
Q 002234 750 -HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 828 (949)
Q Consensus 750 -~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 828 (949)
.+.+.....+. |+.|+.. ..+++ .+.....+.|+.||+.....-.....
T Consensus 225 ~~~k~~~~~~cR-------F~~d~~~-------~~l~l----------------aa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 225 PFSKDEMFSSCR-------FSVDNAQ-------ETLRL----------------AASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred Ccccchhhhhce-------ecccCCC-------ceEEE----------------EEecCCCCceeEEEeeeeccccccch
Confidence 12222222222 5555421 00000 11122334455554432221111111
Q ss_pred cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCC--EEEEEECCCeEEEEE
Q 002234 829 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 904 (949)
Q Consensus 829 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d--~l~sgs~dg~I~vwd 904 (949)
++.......|.+++++++|.+++.++.|| .|-|++..+.+.++.++ |...|+.+.|+|| ++++-+.+.++.|..
T Consensus 275 -~~~~~~~~siSsl~VS~dGkf~AlGT~dG-sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 275 -RKKIKRFKSISSLAVSDDGKFLALGTMDG-SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred -hhhhhccCcceeEEEcCCCcEEEEeccCC-cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 22222335899999999999999999997 99999999999888887 7889999999999 788888888888877
Q ss_pred CCC
Q 002234 905 QKR 907 (949)
Q Consensus 905 ~~~ 907 (949)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 644
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.1e-12 Score=134.55 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=145.5
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeEEEEee-cCC-C
Q 002234 679 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIK-D 754 (949)
Q Consensus 679 d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~-~~~-~ 754 (949)
..++++...|+|++||..++ +.+..+++|...++.+.|.. .+..+.+++.||+|++||++.......... .+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 46889999999999999998 89999999999999999987 467899999999999999998642221111 111 1
Q ss_pred ceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE----ECCCcEEEEECCCCce-eeeeccc
Q 002234 755 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG----CQDGAIQEIDLATGTF-ATIQTGH 829 (949)
Q Consensus 755 ~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg----s~Dg~I~iwd~~~~~~-~~~~~~~ 829 (949)
+..++. ..-.++ .+.+| ..|-.|.+||++..+. +.
T Consensus 119 ~f~~ld-------~nck~~----------------------------ii~~GtE~~~s~A~v~lwDvR~~qq~l~----- 158 (376)
T KOG1188|consen 119 PFICLD-------LNCKKN----------------------------IIACGTELTRSDASVVLWDVRSEQQLLR----- 158 (376)
T ss_pred cceEee-------ccCcCC----------------------------eEEeccccccCceEEEEEEeccccchhh-----
Confidence 222221 000111 23333 2466799999998876 32
Q ss_pred ccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCe----eEEeecCCCcEEEEEEcCC---EEEEEECCCeEE
Q 002234 830 RKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYN----MVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVE 901 (949)
Q Consensus 830 ~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~----~~~~~~~~~~v~~l~~s~d---~l~sgs~dg~I~ 901 (949)
.-...|...|+++.|+| +...+++||.|| .|.+||+.... +..++.+.+.|.++.|..+ .+++-+..++..
T Consensus 159 ~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 159 QLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence 23467999999999997 566889999997 99999997543 4556667888999999877 699999999999
Q ss_pred EEECCCCcEEEEe
Q 002234 902 IWDQKRQIRIETL 914 (949)
Q Consensus 902 vwd~~~~~~~~~l 914 (949)
+|+++.+.....+
T Consensus 238 ~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 238 IYELEDGSEETWL 250 (376)
T ss_pred EEEccCCChhhcc
Confidence 9999988765554
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=2e-14 Score=161.22 Aligned_cols=238 Identities=18% Similarity=0.238 Sum_probs=178.3
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
+..+.+|...|+|+.|... ++++|+.|..|+||..+++ .++....||.+.|+.++.+.+..+++++|.|..|++|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3456799999999999874 9999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~ 818 (949)
+.++.+ ..-...|.+.|++++ |+| ..+.+.||++++||.+
T Consensus 261 l~~~~p-vsvLrghtgavtaia-------fsP--------------------------------~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGAP-VSVLRGHTGAVTAIA-------FSP--------------------------------RASSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCch-HHHHhccccceeeec-------cCc--------------------------------cccCCCCCceEecccc
Confidence 999852 122234566666666 444 2366889999999988
Q ss_pred CCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEE
Q 002234 819 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC 895 (949)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs 895 (949)
-.-.+..-. +..+. ....+.++.|..++.-+.+++.|+ .-..|....-.. +...+.-+.++.| +.+++-
T Consensus 301 ~~~~~y~pr-p~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~-ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 301 LEPRIYVPR-PLKFT-EKDLVDSILFENNGDRFLTGSRDG-EARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred ccccccCCC-CCCcc-cccceeeeeccccccccccccCCc-ccccchhhHhhh-----hccceEEEeccccccccceeee
Confidence 222111111 11111 235677888888888889998886 666665432100 1111222222223 566677
Q ss_pred CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCE-EEEEeCCCcEEEEeCC
Q 002234 896 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGLS 949 (949)
Q Consensus 896 ~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~-L~sgs~Dg~I~iWdl~ 949 (949)
.+-.+.+|+..+|...+.+ .+|...+..+.++|-+.. ..+++.||...|||+.
T Consensus 373 ~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred eeeEeeeeecccchhhhhh-cccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 7888999999999999998 699999999999997654 4588999999999973
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.3e-12 Score=150.38 Aligned_cols=210 Identities=12% Similarity=0.066 Sum_probs=142.9
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEEEeecCCCceeeeeecc
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~ 763 (949)
+..|.+||.+.. . .+.+..|...+.+..|+|||+.|+.++.+ ..|++||+.+++...+... .+.....
T Consensus 183 ~~~i~i~d~dg~--~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~---- 253 (429)
T PRK01742 183 PYEVRVADYDGF--N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAP---- 253 (429)
T ss_pred eEEEEEECCCCC--C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCce----
Confidence 468999999876 2 45567788899999999999999988764 3699999998864444322 2222223
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEE--EEECCCCceeeeecccccccCCCCCEEE
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ--EIDLATGTFATIQTGHRKLLGKANPVHA 841 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~--iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 841 (949)
.|+|||+.++. +.+.+|.+. +||+.++... .+..+...+..
T Consensus 254 ---~wSPDG~~La~---------------------------~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~ 296 (429)
T PRK01742 254 ---AFSPDGSRLAF---------------------------ASSKDGVLNIYVMGANGGTPS-------QLTSGAGNNTE 296 (429)
T ss_pred ---eECCCCCEEEE---------------------------EEecCCcEEEEEEECCCCCeE-------eeccCCCCcCC
Confidence 49999987533 233456544 4566666543 33445566788
Q ss_pred EEEeCCceEEEEEECCCCEEEEEECCCC-eeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccc
Q 002234 842 LQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT 918 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h 918 (949)
..|+||+..++..+..++...||++... .....+.+.. ....|+|| .++.++.++ +.+||+.+++..... ..+
T Consensus 297 ~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~ 372 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STF 372 (429)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCC
Confidence 9999999987766643347788876432 2222233322 45778988 676666655 566999988754332 222
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 919 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
....+.|+|||++|++++.+|.+.+|++
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3467889999999999999999888864
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=8.1e-12 Score=142.79 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=189.1
Q ss_pred EEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCeeEEE
Q 002234 672 LSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG---EMLYSGSLDKTARVWSIGNEEIHCV 747 (949)
Q Consensus 672 ~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg---~~L~Sgs~Dg~I~vWd~~~~~~~~~ 747 (949)
..-.||+| ..+-+..+..|.||...|+ .++..+.+|..+++++.+.|.. .++++++.||+|++||...+. .+
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~--Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE--LL 95 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchH--hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE--EE
Confidence 33457777 5555666779999999999 8999999999999999999854 478899999999999999984 44
Q ss_pred EeecCCCceeeeeeccc-----eEEEEeCCCEEEEEEe----cCeEEEec-------------CCCCceEEEEeC-CEEE
Q 002234 748 QVHDIKDQIQNLAVSNS-----ILCFIPQGAGIKVHLR----NGKTKLLN-------------SSKYPKCLALVQ-GKVY 804 (949)
Q Consensus 748 ~~~~~~~~v~~l~~~~~-----~~~fsp~g~~l~~~~~----~g~i~~~~-------------~~~~v~~v~~~~-~~l~ 804 (949)
...+...++..+.+.+. ...+..-+.+-+.... .++.+-+. ......++.+.+ +.+.
T Consensus 96 kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 96 KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 44444444444443211 0111111111111100 01111000 011245566655 5577
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC--C--eeEEeec-CCC
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN--Y--NMVGSLP-TLS 879 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~--~--~~~~~~~-~~~ 879 (949)
....+..+.+|+..++. ........-..|...+++.++||++.+++++..|| .|.+|.--. . .....+. |+.
T Consensus 176 ~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-rI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDG-RILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred EEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCC-cEEEEeccccccccccceEEEeccc
Confidence 77788889999998866 22333344456778899999999999999999998 799996432 1 1223344 789
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|.+++|+++ ++++|+..|.+.+|.+.+++ +.+...-.++|..+.+|||+.+.+....|+.|.+-..
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 9999999999 89999999999999999998 4444566779999999999999999999999987643
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=5.6e-11 Score=123.42 Aligned_cols=224 Identities=11% Similarity=0.109 Sum_probs=157.5
Q ss_pred ccccEEEEecCCCCeEEEecCCceeeec--CCCCceEEEEEeCCEEEEEeCCCc--EEEEecCCCceeeeEEecccCCCE
Q 002234 638 FEMVKVLSNGHDSSADFWNHRELVHVDS--SENGKVLSIACFRDKIFSGHSDGT--IKVWTGRGSILHLIQQIREHTKAV 713 (949)
Q Consensus 638 ~~~~~l~s~s~dg~I~vWd~~~~~~~~~--~h~~~V~~l~~s~d~lasgs~Dg~--I~vWd~~t~~~~~i~~l~~H~~~V 713 (949)
-+...|..|+.|| -++|+......... ...-.|..+-|+..++|..+.+.. +++.+.+.+ ..+..+. ....|
T Consensus 15 qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~--~~ICe~~-fpt~I 90 (391)
T KOG2110|consen 15 QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK--TTICEIF-FPTSI 90 (391)
T ss_pred cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC--ceEEEEe-cCCce
Confidence 3455677777777 45777663222111 223457788899997776665544 899999887 4444442 45679
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~ 791 (949)
.+|.++. +.|+.+=.+. |.|||+++.+ ++.+... .+...+..+. +++.+.+++.-
T Consensus 91 L~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS-------~n~~n~ylAyp------------- 147 (391)
T KOG2110|consen 91 LAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALS-------PNNANCYLAYP------------- 147 (391)
T ss_pred EEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeec-------cCCCCceEEec-------------
Confidence 9998865 4566655544 9999999975 2222222 1222233322 22222232211
Q ss_pred CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee
Q 002234 792 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 871 (949)
Q Consensus 792 ~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~ 871 (949)
.....|.|.+||..+-+.. ..+..|.+++-+++|+++|.++|++|..|..||++.+.+|+.
T Consensus 148 -------------~s~t~GdV~l~d~~nl~~v------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 148 -------------GSTTSGDVVLFDTINLQPV------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred -------------CCCCCceEEEEEcccceee------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 1233689999999988776 566789999999999999999999999999999999999999
Q ss_pred EEeecC---CCcEEEEEEcCC--EEEEEECCCeEEEEECCC
Q 002234 872 VGSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 872 ~~~~~~---~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~ 907 (949)
+..|.- ...|.+++|+|+ ++.+.+..++|+||.++.
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999983 457899999999 888889999999998754
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.46 E-value=7.5e-13 Score=138.44 Aligned_cols=161 Identities=22% Similarity=0.314 Sum_probs=124.7
Q ss_pred CCCceEEEEEeCC---EEEEEeCCCcEEEEecCCC-------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 667 ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS-------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 667 h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~-------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
...+|..+.|.++ .++||+.|..|++|.+..+ .......+..|+..|+++.|+|+|+.|+||+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 4568999999885 8999999999999987643 34556778899999999999999999999999999999
Q ss_pred EECCCC-------------e-e-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 737 WSIGNE-------------E-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 737 Wd~~~~-------------~-~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
|....- + . .......|...+..+. |+|++.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~-------Ws~d~~---------------------------- 136 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA-------WSPDSN---------------------------- 136 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhh-------ccCCCc----------------------------
Confidence 987621 0 0 1111112344444444 555554
Q ss_pred EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
.+++|+.|.++++||+..|... ....+|...+..++|.|-..|+++-+.|- ..+.+++...
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~------~~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~ 197 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLL------AILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLK 197 (434)
T ss_pred eeeeeeccceEEEEEeccceeE------eeccccccccceeecchhhhhhhhhccCc-ccceeeeeee
Confidence 3889999999999999999988 55667889999999999999999998873 5666655443
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.45 E-value=6.4e-12 Score=127.82 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=168.2
Q ss_pred CCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc-eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCC
Q 002234 667 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI-GNE 742 (949)
Q Consensus 667 h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~-~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~-~~~ 742 (949)
-..+|+|.+|++| .+|.+-....|.||...+.. ++..++++.|...|+.|+|+|.++.|++++.|..-+||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999998 89999999999999998886 7899999999999999999999999999999999999998 444
Q ss_pred ee-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc
Q 002234 743 EI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 821 (949)
Q Consensus 743 ~~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~ 821 (949)
+. ..+....++....++. |+|.++ ++++|+.-..|.+|-.+...
T Consensus 89 ~WkptlvLlRiNrAAt~V~-------WsP~en----------------------------kFAVgSgar~isVcy~E~EN 133 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVK-------WSPKEN----------------------------KFAVGSGARLISVCYYEQEN 133 (361)
T ss_pred eeccceeEEEeccceeeEe-------ecCcCc----------------------------eEEeccCccEEEEEEEeccc
Confidence 42 2222333444555554 555544 58888888888888877654
Q ss_pred eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC-----C-------------CeeEEee-cCCCcEE
Q 002234 822 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-----N-------------YNMVGSL-PTLSEVR 882 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-----~-------------~~~~~~~-~~~~~v~ 882 (949)
.-.+.. ..-..+...|++++|||++.+++.|+.|+ ..+++..- . |..+..+ ...+.+.
T Consensus 134 dWWVsK--hikkPirStv~sldWhpnnVLlaaGs~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 134 DWWVSK--HIKKPIRSTVTSLDWHPNNVLLAAGSTDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred ceehhh--hhCCccccceeeeeccCCcceecccccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence 432211 12234567899999999999999999997 88888641 1 2233334 3567899
Q ss_pred EEEEcCC--EEEEEECCCeEEEEECCCCc-EEEEeccccccceeEEEEeCC
Q 002234 883 AMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 883 ~l~~s~d--~l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spd 930 (949)
.+.|+|. .++-.+.|+++.+-|..... .+......+ -+..++.|-.+
T Consensus 211 ~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise 260 (361)
T KOG1523|consen 211 GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE 260 (361)
T ss_pred eeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeecC
Confidence 9999976 78889999999999987664 444443334 46667766543
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-11 Score=144.86 Aligned_cols=273 Identities=16% Similarity=0.151 Sum_probs=173.2
Q ss_pred cccccccEEEEecCCCCeEEEecCCc---------eeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCC--c--
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHREL---------VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS--I-- 699 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~~---------~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~--~-- 699 (949)
....++.++++||.||+||+||..+. ..++..-.+.+.++..-+ +.+|.|+.||.|++.+++.. .
T Consensus 1056 ~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred ecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccc
Confidence 34456689999999999999998731 122322456666666655 59999999999999998752 1
Q ss_pred -eeeeEEeccc-CC-CEEEEEEec-CCC-EEEEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCC
Q 002234 700 -LHLIQQIREH-TK-AVTGLAILQ-SGE-MLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 700 -~~~i~~l~~H-~~-~V~~v~fsp-dg~-~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~ 773 (949)
..+.+....+ .+ .|..-+|.. ++. .++.+..-+.|..||++... ....+.....+.|+++. .+|.+.
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~-------idp~~~ 1208 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV-------IDPWCN 1208 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE-------ecCCce
Confidence 1222222222 22 333444443 334 77888888999999998853 12222222334444444 333333
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC---CceE
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN---GLVY 850 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~ 850 (949)
.+++|+..|.+.+||++-+..+.... .++..+++.+..++ ...+
T Consensus 1209 ----------------------------WlviGts~G~l~lWDLRF~~~i~sw~-----~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1209 ----------------------------WLVIGTSRGQLVLWDLRFRVPILSWE-----HPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred ----------------------------EEEEecCCceEEEEEeecCceeeccc-----CcccCCcceEEeeccCCCCce
Confidence 48899999999999999887764322 23446788887764 3345
Q ss_pred EEEEEC-CCCEEEEEECCCCeeEEeecCC-----------C----------cEEEEEEcCC-EEEEEECCCeEEEEECCC
Q 002234 851 TASTSL-DGAAVKMWSTSNYNMVGSLPTL-----------S----------EVRAMVVSSE-LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 851 l~s~s~-Dg~~I~iwd~~~~~~~~~~~~~-----------~----------~v~~l~~s~d-~l~sgs~dg~I~vwd~~~ 907 (949)
.++++. ..+.|.+|++.+|.+...+-.. . .+.+....++ ++++|+.|..|+.||...
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 555443 3359999999988766555311 0 1122222233 789999999999999754
Q ss_pred CcEE-----------------------------E-------------------Ee-------ccccccceeEEEEeCC-C
Q 002234 908 QIRI-----------------------------E-------------------TL-------QTGTSGKVQCMALDDN-E 931 (949)
Q Consensus 908 ~~~~-----------------------------~-------------------~l-------~~~h~~~I~~l~~spd-g 931 (949)
.... . .+ ...|.+.|+++++-.. .
T Consensus 1336 p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q 1415 (1431)
T KOG1240|consen 1336 PEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ 1415 (1431)
T ss_pred cccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc
Confidence 2211 0 00 0235668888887543 3
Q ss_pred CEEEEEeCCCcEEEEe
Q 002234 932 EFLVIGTSDGRIQAWG 947 (949)
Q Consensus 932 ~~L~sgs~Dg~I~iWd 947 (949)
.+|++++.||.|+||.
T Consensus 1416 ~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1416 PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cEEEEecCCCeeeecC
Confidence 5899999999999994
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.42 E-value=3.8e-12 Score=126.00 Aligned_cols=235 Identities=14% Similarity=0.171 Sum_probs=156.5
Q ss_pred ccEEEEecCCCCeEEEecCC--ceeeec-CCCCceEEEEEeC-CEEEEEeCCCcEEEEecCCCceeeeEEe---------
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQI--------- 706 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~~s~-d~lasgs~Dg~I~vWd~~t~~~~~i~~l--------- 706 (949)
..+|.+|...|.|++|++.+ ....+. .|...|+.+.--| +.+.+-+.|+.+.+|++..+....++.+
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCr 104 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCR 104 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeecccccccc
Confidence 34688999999999999974 333444 5778899999988 5999999999999999876311111100
Q ss_pred ------------------------------------------cccCCCEEEEEEec-CCC--EEEEEeCCCcEEEEECCC
Q 002234 707 ------------------------------------------REHTKAVTGLAILQ-SGE--MLYSGSLDKTARVWSIGN 741 (949)
Q Consensus 707 ------------------------------------------~~H~~~V~~v~fsp-dg~--~L~Sgs~Dg~I~vWd~~~ 741 (949)
.+..+.+.+..+.. ++. +++.|-.+|.|.+||+.+
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 01223355554332 222 466777899999999988
Q ss_pred CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CEEEEEECCCcEEEEECCC
Q 002234 742 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 742 ~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~ 819 (949)
+. ..+.......-+ + ..-.+...+.++.+.+ +.=++|+.+..+..|.+..
T Consensus 185 ~~-~~~~~~~~~kv~------------~---------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 185 GD-KIIQLPQSSKVE------------S---------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred Cc-eeeccccccccc------------c---------------chhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 73 111111000000 0 0001233344444432 2235677777788887764
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEEC
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCK 896 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~ 896 (949)
........ ....-....|..+.+-||++.+++++.|+ .||+|+.++.+++..++ |...|++++|+|+ .+++++.
T Consensus 237 s~gslq~~--~e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 237 STGSLQIR--KEITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccCccccc--ceEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 42111111 11112234688899999999999999997 99999999999999998 8899999999999 7999999
Q ss_pred CCeEEEEEC
Q 002234 897 GGTVEIWDQ 905 (949)
Q Consensus 897 dg~I~vwd~ 905 (949)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=1.4e-11 Score=125.37 Aligned_cols=229 Identities=14% Similarity=0.078 Sum_probs=164.3
Q ss_pred cccccccccEEEEecCCCCeEEEecC-----CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEec-CCCceeeeE
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSILHLIQ 704 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~-~t~~~~~i~ 704 (949)
.-++..|.+.++.+.....|.||... +..+++..|...|++|+|+|. .|++++.|..-+||.. ..+.+++..
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence 34556688899999999999999875 367788999999999999995 9999999999999999 777888888
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE---EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH---CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 781 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~ 781 (949)
.+..|...+++|.|+|.++.+++||.-..|.||-.+...-- .......+..|.++. |.|++-.
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld-------WhpnnVL------- 160 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD-------WHPNNVL------- 160 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee-------ccCCcce-------
Confidence 88999999999999999999999999999999998876411 111223445556665 6665554
Q ss_pred CeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC-----CCceeeee-------cccccccCCCCCEEEEEEeCCce
Q 002234 782 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-----TGTFATIQ-------TGHRKLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 782 g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~-----~~~~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~ 849 (949)
+++|+.|+..++|..- ........ .....+....+.++.+.|+|+|.
T Consensus 161 ---------------------laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 161 ---------------------LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred ---------------------ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 5556666666665421 11000000 00012234567899999999999
Q ss_pred EEEEEECCCCEEEEEECCCCe-eEEeec-CCCcEEEEEEc-CCEEEEEECC
Q 002234 850 YTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSEVRAMVVS-SELVYLGCKG 897 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s-~d~l~sgs~d 897 (949)
.++-.+.|. ++.+-|..... .+.+.. ..-+..++.|- ++.++.++.|
T Consensus 220 ~lawv~Hds-~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 220 RLAWVGHDS-TVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred EeeEecCCC-ceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 999999996 99999887654 333333 33556666653 3345554444
No 210
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.38 E-value=2.6e-11 Score=138.93 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=148.5
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCee-----EEEEeecCCCceeeee
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI-----HCVQVHDIKDQIQNLA 760 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~-----~~~~~~~~~~~v~~l~ 760 (949)
++.+.||++... ..+-..+ .-...|+++.|+| +.++++.|..+|.|.+||++.+.. .+.....|..++..+.
T Consensus 221 ~~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 358999999876 2444444 3577899999999 788999999999999999998752 1222233444444433
Q ss_pred eccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeec-cccc-----ccC
Q 002234 761 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT-GHRK-----LLG 834 (949)
Q Consensus 761 ~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~-----~~~ 834 (949)
|..+- .+..+++++.||.|..|+++.-....... .... -..
T Consensus 299 -------W~~~~--------------------------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~ 345 (555)
T KOG1587|consen 299 -------WLQNE--------------------------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSS 345 (555)
T ss_pred -------EeccC--------------------------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccc
Confidence 21110 12348999999999999887544421110 0000 012
Q ss_pred CCCCEEEEEEeCC-ceEEEEEECCCCEEEEEE---CCCCe-----eE-EeecCCCcEEEEEEcCC---EEEEEECCCeEE
Q 002234 835 KANPVHALQVHNG-LVYTASTSLDGAAVKMWS---TSNYN-----MV-GSLPTLSEVRAMVVSSE---LVYLGCKGGTVE 901 (949)
Q Consensus 835 h~~~V~~l~~~~~-~~~l~s~s~Dg~~I~iwd---~~~~~-----~~-~~~~~~~~v~~l~~s~d---~l~sgs~dg~I~ 901 (949)
....++++.|.+. -..++.|+.+| .|.--+ .+... .. ....|.+.|+++.++|= .+.+++ |.+|+
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVR 423 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCc-EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeE
Confidence 2356889999754 34455666665 665522 22222 12 12237889999998874 455554 99999
Q ss_pred EEECC-CCcEEEEeccccccceeEEEEeCCC-CEEEEEeCCCcEEEEeC
Q 002234 902 IWDQK-RQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 902 vwd~~-~~~~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl 948 (949)
||.-. ...++..+. .+...|++++|||.. ..++++..||.|.+|||
T Consensus 424 iWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred eccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 99988 666777774 677789999999987 46677888999999997
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=4.2e-10 Score=125.68 Aligned_cols=292 Identities=15% Similarity=0.237 Sum_probs=176.1
Q ss_pred EEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEE
Q 002234 642 KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 717 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~ 717 (949)
.+++-..++.|.|.|..+ .+.....+...-..+.|+|| +++.++.||.|.++|+.++ +.+.+++... ....++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEE
Confidence 446677889999999974 34444444334455778996 7888889999999999999 7888886443 467899
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCee-EEEEeecC-----CCceeeeeeccceEEEEeCCCEEEEEEec-CeEEEec-
Q 002234 718 ILQSGEMLYSGS-LDKTARVWSIGNEEI-HCVQVHDI-----KDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLN- 788 (949)
Q Consensus 718 fspdg~~L~Sgs-~Dg~I~vWd~~~~~~-~~~~~~~~-----~~~v~~l~~~~~~~~fsp~g~~l~~~~~~-g~i~~~~- 788 (949)
+++||++++++. .++++.++|.++.+. +.+..... ...+..+. .+|....+++...+ +.+-+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv-------~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV-------ASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE-------E-SSSSEEEEEETTTTEEEEEET
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEE-------ecCCCCEEEEEEccCCeEEEEEe
Confidence 999999998776 589999999999752 22222211 22344443 56666655554443 5555444
Q ss_pred ------------CCCCceEEEEeCC--EE-EEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-----
Q 002234 789 ------------SSKYPKCLALVQG--KV-YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----- 848 (949)
Q Consensus 789 ------------~~~~v~~v~~~~~--~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----- 848 (949)
.........++++ ++ ++...++.|-++|..+++........ -..|..++..+ .||..
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g--~~p~~~~~~~~-php~~g~vw~ 234 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--KKPHPGPGANF-PHPGFGPVWA 234 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--SSBEETTEEEE-EETTTEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc--ccccccccccc-cCCCcceEEe
Confidence 2333444555553 34 44566778999999998876543211 12233333332 12221
Q ss_pred -----eEE-EEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEE----ECCCeEEEEECCCCcEEEEecc
Q 002234 849 -----VYT-ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG----CKGGTVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 849 -----~~l-~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sg----s~dg~I~vwd~~~~~~~~~l~~ 916 (949)
.+. ...+.| .+.+||..+++.+++++..+.-..+..+|| ++++. ...++|.|+|.++.+.+.++..
T Consensus 235 ~~~~~~~~~~~ig~~--~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTD--PVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EEBSSSSEEEEEE----TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred eccccceecccccCC--ccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 111 122222 566799999999999995444478888998 77776 4558999999999988888854
Q ss_pred ccccceeEEEEeCCCCEEEEEeCC--CcEEEEeC
Q 002234 917 GTSGKVQCMALDDNEEFLVIGTSD--GRIQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg~~L~sgs~D--g~I~iWdl 948 (949)
+....+..+.|++||+.+..+..+ |.|.|||-
T Consensus 313 ~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 313 GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 433459999999999977666544 36999985
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.4e-11 Score=124.69 Aligned_cols=245 Identities=15% Similarity=0.126 Sum_probs=165.6
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC----ceeeeEEecc-cCCCEEEEEEecCCCEEEEEeCCCcE
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS----ILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTA 734 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~----~~~~i~~l~~-H~~~V~~v~fspdg~~L~Sgs~Dg~I 734 (949)
.-+.+|.+.|.++.|+.+ +|++|+.|..+++|+++.. ..+++..... |...|.|++|.....++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345689999999999986 9999999999999998632 1145554433 56899999999989999999999999
Q ss_pred EEEECCCCeeEEEEeec---CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCc
Q 002234 735 RVWSIGNEEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 811 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~ 811 (949)
..-|+++.+ .+.... ..+.|+.+. .+|. ++.+++.+.+|.
T Consensus 130 I~HDiEt~q--si~V~~~~~~~~~VY~m~-------~~P~----------------------------DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 130 IKHDIETKQ--SIYVANENNNRGDVYHMD-------QHPT----------------------------DNTLIVVTRAKL 172 (609)
T ss_pred Eeeecccce--eeeeecccCcccceeecc-------cCCC----------------------------CceEEEEecCce
Confidence 999999974 333332 234566655 3332 235888899999
Q ss_pred EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE-EEEEECCCCEEEEEECCCCee-EEe------ecC-CCcEE
Q 002234 812 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGAAVKMWSTSNYNM-VGS------LPT-LSEVR 882 (949)
Q Consensus 812 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~Dg~~I~iwd~~~~~~-~~~------~~~-~~~v~ 882 (949)
|.+||.+........ .-........+++.|+|.... +++.+..+ -+-+||.+.... +.. ++. ...-.
T Consensus 173 V~~~D~Rd~~~~~~~---~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~-G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 173 VSFIDNRDRQNPISL---VLPANSGKNFYTAEFHPETPALILVNSETG-GPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred EEEEeccCCCCCCce---eeecCCCccceeeeecCCCceeEEeccccC-CCCceeeccccchHHhhhccccCcccchhhh
Confidence 999999876522100 011223456788999987654 45555444 799999986432 111 111 22335
Q ss_pred EEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccccc-------ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 883 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 883 ~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~-------~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++.|+|+ .+.+--....-.+||+.+..+ ..++..|.. .+.+++|--|- .+++|+.+=.|++|.+.
T Consensus 249 ~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRGKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred heeeCCCCCeehhhhccCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 6778877 444444444456778776443 223233332 67888887554 59999999999999873
No 213
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.36 E-value=4.5e-13 Score=97.63 Aligned_cols=39 Identities=33% Similarity=0.745 Sum_probs=31.2
Q ss_pred CcCccccccCceecCCCccccHHHHHHHHhcCC---CCCCCC
Q 002234 21 CPITTHIFDDPVTLETGQTYERRAIQEWIERGN---SSCPIT 59 (949)
Q Consensus 21 Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~---~~CP~c 59 (949)
||||+++|+|||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999887543 369987
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.7e-10 Score=131.78 Aligned_cols=212 Identities=12% Similarity=0.070 Sum_probs=143.2
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
..|.+||.++. ..+.+..|...+.+..|+|||+.|+..+. +..|.+||+.+++...+. ...+.+....
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~---- 252 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--NFPGMTFAPR---- 252 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--cCCCcccCcE----
Confidence 47888998765 34556678889999999999999988764 468999999988644333 2233444444
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
|+|||+.++ ++.+.+| .|.+||+.++... .+..+.......
T Consensus 253 ---~SPDG~~la---------------------------~~~~~~g~~~Iy~~d~~~~~~~-------~Lt~~~~~~~~~ 295 (435)
T PRK05137 253 ---FSPDGRKVV---------------------------MSLSQGGNTDIYTMDLRSGTTT-------RLTDSPAIDTSP 295 (435)
T ss_pred ---ECCCCCEEE---------------------------EEEecCCCceEEEEECCCCceE-------EccCCCCccCce
Confidence 999998753 2333444 4777898887653 233344556678
Q ss_pred EEeCCceEEEEEECCC--CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC---CeEEEEECCCCcEEEEec
Q 002234 843 QVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d---g~I~vwd~~~~~~~~~l~ 915 (949)
.|+||+..++..+..+ ..|.+||+.++.......+...+....|+|| .++..+.+ ..|.+||..++.. ..+.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 9999999887766432 3688889877655443334555677889998 55554432 3688899866543 4443
Q ss_pred cccccceeEEEEeCCCCEEEEEeCC------CcEEEEeC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSD------GRIQAWGL 948 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~D------g~I~iWdl 948 (949)
.+ ..+....|+|||++|+..+.+ ..+.++|+
T Consensus 375 ~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 375 SG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 22 357788999999988766543 24666665
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=1.6e-12 Score=137.78 Aligned_cols=259 Identities=17% Similarity=0.251 Sum_probs=189.0
Q ss_pred ccccccEEEEecCCCCeEEEecCCc-eeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCE
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHREL-VHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 713 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~~-~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V 713 (949)
++-+|..++.||..|.+--+|+.+. +.....-...|..+.|-.+ .++......-+.|||-..- .++.++.| ..|
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt---ElHClk~~-~~v 212 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT---ELHCLKRH-IRV 212 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc---EEeehhhc-Cch
Confidence 3447899999999999999999853 3333344678999999886 5555556678999998765 45555545 468
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCc
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 793 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v 793 (949)
..+.|-|..-+|++++..|.++--|+.+|++. -......+.+..+. -+|-+
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV-a~~~t~~G~~~vm~-------qNP~N--------------------- 263 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV-ASIRTGAGRTDVMK-------QNPYN--------------------- 263 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhh-HHHHccCCccchhh-------cCCcc---------------------
Confidence 99999999999999999999999999998521 11111122222222 11111
Q ss_pred eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE
Q 002234 794 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 873 (949)
Q Consensus 794 ~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~ 873 (949)
.-+-+|...|+|.+|...+.+.+ .++..|.++|.+|+++++|.|+++++.|. .++|||+++...+.
T Consensus 264 -------aVih~GhsnGtVSlWSP~skePL------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr-~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 264 -------AVIHLGHSNGTVSLWSPNSKEPL------VKILCHRGPVSSIAVDRGGRYMATTGLDR-KVKIWDLRNFYQLH 329 (545)
T ss_pred -------ceEEEcCCCceEEecCCCCcchH------HHHHhcCCCcceEEECCCCcEEeeccccc-ceeEeeeccccccc
Confidence 12567888999999999988877 67889999999999999999999999994 99999999988777
Q ss_pred eecCCCcEEEEEEcCCEEEEEECCCeEEEEEC-CCC--cEEE-EeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 874 SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQ-KRQ--IRIE-TLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 874 ~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~-~~~--~~~~-~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
++....+...+++|...+++.+....|.||.- -.+ ..-. -+...-.+.|..+.|.|-...|-.|...|
T Consensus 330 t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 330 TYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 77767788899999998888888889999952 221 1111 11111234889999998776666555444
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.2e-10 Score=134.61 Aligned_cols=212 Identities=15% Similarity=0.074 Sum_probs=140.8
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
.+|.+||..+. ..+.+..|...+.+..|+|||+.|+.++.+ ..|.+||+.+++...+... .+.....
T Consensus 184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~----- 253 (433)
T PRK04922 184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAP----- 253 (433)
T ss_pred EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCc-----
Confidence 46899998765 344566677889999999999999988753 4699999998864433322 2222233
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
.|+|||+.++. +.+.+| .|.+||+.++... .+..+.......
T Consensus 254 --~~SpDG~~l~~---------------------------~~s~~g~~~Iy~~d~~~g~~~-------~lt~~~~~~~~~ 297 (433)
T PRK04922 254 --SFSPDGRRLAL---------------------------TLSRDGNPEIYVMDLGSRQLT-------RLTNHFGIDTEP 297 (433)
T ss_pred --eECCCCCEEEE---------------------------EEeCCCCceEEEEECCCCCeE-------ECccCCCCccce
Confidence 39999987532 233333 5899999888753 233344445678
Q ss_pred EEeCCceEEEEEECCCC--EEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC---CeEEEEECCCCcEEEEec
Q 002234 843 QVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d---g~I~vwd~~~~~~~~~l~ 915 (949)
.|+||+.+++..+..++ .|.++|+.+++......+.......+|+|| .++..+.+ ..|.+||+.+++.. .+.
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 99999998887764332 467777777654332223344456899998 56554433 26999999888754 442
Q ss_pred cccccceeEEEEeCCCCEEEEEeCC---CcEEEEeC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 948 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~D---g~I~iWdl 948 (949)
+........|+|||++++..+.+ +.|.+|++
T Consensus 377 --~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 377 --PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 22245677999999988776653 34666665
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.9e-10 Score=130.76 Aligned_cols=212 Identities=14% Similarity=0.071 Sum_probs=140.3
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~---Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
..|.+||.++.. .+.+..+...+.+..|+|||+.|+..+. +..+.+||+.+++...+... .+.+...
T Consensus 179 ~~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~----- 248 (429)
T PRK03629 179 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAP----- 248 (429)
T ss_pred eeEEEEcCCCCC---CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCe-----
Confidence 368999988762 2334456778999999999999887653 45799999998864443322 2222233
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
.|+|||+.++.. .+.+| .|.+||+.++.... +..+...+...
T Consensus 249 --~~SPDG~~La~~---------------------------~~~~g~~~I~~~d~~tg~~~~-------lt~~~~~~~~~ 292 (429)
T PRK03629 249 --AFSPDGSKLAFA---------------------------LSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEP 292 (429)
T ss_pred --EECCCCCEEEEE---------------------------EcCCCCcEEEEEECCCCCEEE-------ccCCCCCcCce
Confidence 399999875432 22233 58889998887642 22233467788
Q ss_pred EEeCCceEEEEEECCCCE--EEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEEC-C--CeEEEEECCCCcEEEEec
Q 002234 843 QVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-G--GTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~--I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~-d--g~I~vwd~~~~~~~~~l~ 915 (949)
.|+||+..++..+.+++. |.++|+.++................|+|| +++..+. + ..|++||+.+++. ..+.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt 371 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLT 371 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeC
Confidence 999999988777755434 44456766654332223445567889998 5555443 3 4688999988864 3442
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCc---EEEEeC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSDGR---IQAWGL 948 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~Dg~---I~iWdl 948 (949)
..+ ......|+|||++|+.++.++. +.+|++
T Consensus 372 ~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 372 DTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 222 2456789999999999988765 566664
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.5e-10 Score=128.48 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=149.7
Q ss_pred CCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEe---CCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC
Q 002234 650 SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGH---SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 650 g~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs---~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
..|.+||.+. ..+.+..+.+.+.+.+|||| .|+..+ .+..|.+||+.+++.+.+..+.+| +....|+|||+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCC
Confidence 3688888873 33445567788999999997 555443 345799999998854444444444 44689999999
Q ss_pred EEEEE-eCCC--cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 724 MLYSG-SLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 724 ~L~Sg-s~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
.|+.. +.+| .|.+||+.+++...+. .....+... .|+|||+.++...
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~-------~wSPDG~~I~f~s--------------------- 305 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEP-------TWFPDSQNLAYTS--------------------- 305 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCce-------EECCCCCEEEEEe---------------------
Confidence 88755 4455 5889999987644332 222233333 3999998753322
Q ss_pred CEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCCeeEEeec
Q 002234 801 GKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~ 876 (949)
..+| .|..+|+.++.... +..+........|+|++.+++..+.++ ..|.+||+.++... .+.
T Consensus 306 ------~~~g~~~Iy~~d~~~g~~~~-------lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 306 ------DQAGRPQVYKVNINGGAPQR-------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred ------CCCCCceEEEEECCCCCeEE-------eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 2223 34445666665432 122233456788999999887766543 36888999887643 333
Q ss_pred CCCcEEEEEEcCC--EEEEEECCC---eEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 877 TLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~dg---~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
.........|+|| .++.++.++ .+.++++ +|.....+ .+|.+.+...+|+|
T Consensus 372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l-~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL-PATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC-ccCCCCcCCcccCC
Confidence 3223446789999 677766665 3777887 45555666 36778899999987
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=6.3e-10 Score=115.04 Aligned_cols=264 Identities=14% Similarity=0.174 Sum_probs=160.0
Q ss_pred cccEEEEecCCCCeEEEecCC-ceeee-cCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCC----c--------ee
Q 002234 639 EMVKVLSNGHDSSADFWNHRE-LVHVD-SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS----I--------LH 701 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~-~~~~~-~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~----~--------~~ 701 (949)
....++++..|-+|++||-.. ....+ ......|+|++|-|. .|+.|+..| |.+|..... . ..
T Consensus 109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~ 187 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHL 187 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccch
Confidence 345677899999999999773 32233 334678999999995 777777755 899976521 0 01
Q ss_pred eeEEecccCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 702 LIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
.+....+| .+|+++.|.+||..++++|. |..|.|||..++....+.. ...+.+.-+. |+|||..
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLk-------wSPdgd~------ 252 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK-------WSPDGDV------ 252 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEE-------EcCCCCE------
Confidence 12233455 68999999999999999986 6789999999986444432 2234455555 9999986
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
+++++-|+..++|+....-.. .+..--.+.|..-.|+|+|.++.-.... .
T Consensus 253 ----------------------lfaAt~davfrlw~e~q~wt~------erw~lgsgrvqtacWspcGsfLLf~~sg--s 302 (445)
T KOG2139|consen 253 ----------------------LFAATCDAVFRLWQENQSWTK------ERWILGSGRVQTACWSPCGSFLLFACSG--S 302 (445)
T ss_pred ----------------------EEEecccceeeeehhccccee------cceeccCCceeeeeecCCCCEEEEEEcC--C
Confidence 556666666666643322111 1111122366667777766655443322 2
Q ss_pred EEEEECCCC---------------eeEEee------cC----CCcEEEEEEcCC--EEEEEECC--------CeEEEEEC
Q 002234 861 VKMWSTSNY---------------NMVGSL------PT----LSEVRAMVVSSE--LVYLGCKG--------GTVEIWDQ 905 (949)
Q Consensus 861 I~iwd~~~~---------------~~~~~~------~~----~~~v~~l~~s~d--~l~sgs~d--------g~I~vwd~ 905 (949)
-++|.+... .++..+ .+ .+.+.+++|.|. ++++--+. +.|.+||.
T Consensus 303 p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdt 382 (445)
T KOG2139|consen 303 PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDT 382 (445)
T ss_pred ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcc
Confidence 334433210 011111 11 467889999887 67765443 34777887
Q ss_pred CCCcEEEEecccc--ccceeEEEEeC---CCCEEEEEeCCCcEEEEeC
Q 002234 906 KRQIRIETLQTGT--SGKVQCMALDD---NEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 906 ~~~~~~~~l~~~h--~~~I~~l~~sp---dg~~L~sgs~Dg~I~iWdl 948 (949)
...-.+.-...+- ...-..++|+| +|.+|..+=+.|.|.-|++
T Consensus 383 r~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 383 RKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred cccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 6554433321111 11234556655 5677777777788877765
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=133.68 Aligned_cols=215 Identities=18% Similarity=0.243 Sum_probs=150.9
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
....++.||++.|+++.|+.+|.+|+|||+|-.+.|||.-..++.......|...|.++. |.|...
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvK-------FvP~tn------- 106 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVK-------FVPYTN------- 106 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEe-------eeccCC-------
Confidence 345678899999999999999999999999999999998865544444445666666666 544332
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee----eecccccccCCCCCEEEEEEeCCc-eEEEEEE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT----IQTGHRKLLGKANPVHALQVHNGL-VYTASTS 855 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~----~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s 855 (949)
+..+++|..|..|++||+...+.-. ......-+..|...|..++..|++ ..+.+++
T Consensus 107 -------------------nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 107 -------------------NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred -------------------CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec
Confidence 1248899999999999998532211 111114566788999999999888 6778888
Q ss_pred CCCCEEEEEECCCCeeE-------Eeec----CCCcEEEEEEcCC---EEEEEECCCeEEEEECCC--------Cc----
Q 002234 856 LDGAAVKMWSTSNYNMV-------GSLP----TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR--------QI---- 909 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~-------~~~~----~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~--------~~---- 909 (949)
.|| +|+-+|++..... ..+. .--...++.++|. ++++|+.|-..++||.+. +.
T Consensus 168 EDG-tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 168 EDG-TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred CCc-ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 887 9999999863211 1111 1234678888876 899999999999999421 11
Q ss_pred ------EEEEecccccc-----------ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 910 ------RIETLQTGTSG-----------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 910 ------~~~~l~~~h~~-----------~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++..+..+|.. .++-+.|+|+|.-|...-..-.|+++|++
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 24444444431 25678899999655544444468888874
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.9e-10 Score=131.29 Aligned_cols=231 Identities=14% Similarity=0.059 Sum_probs=148.6
Q ss_pred CCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCC---CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC
Q 002234 650 SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 650 g~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
..|.+||... ..+.+..|...+.+.+|+|| .|+..+.+ ..|.+||+.++....+ ..+.+...+..|+|||+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCCCC
Confidence 4688898863 34556677888999999997 67766533 4699999998843333 33444456789999998
Q ss_pred EEE-EEeCCC--cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 724 MLY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 724 ~L~-Sgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
.++ +.+.+| .|.+||+.+++...+. .+....... .|+|||+.++..+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~-------~~spDG~~l~f~s--------------------- 310 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLT--NHFGIDTEP-------TWAPDGKSIYFTS--------------------- 310 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECc--cCCCCccce-------EECCCCCEEEEEE---------------------
Confidence 775 555565 5999999988643322 222222233 3999998754332
Q ss_pred CEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCCeeEEeec
Q 002234 801 GKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~ 876 (949)
..+| .|.++|+.+++.... ..+.......+|+|++.+++..+.++ ..|.+||+.+++.. .+.
T Consensus 311 ------d~~g~~~iy~~dl~~g~~~~l-------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 311 ------DRGGRPQIYRVAASGGSAERL-------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred ------CCCCCceEEEEECCCCCeEEe-------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 2233 366667766654321 11223344689999999888765443 36999999887755 444
Q ss_pred CCCcEEEEEEcCC--EEEEEEC---CCeEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 877 TLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~---dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
+........|+|| .++..+. .+.+++++... .....+. .+.+.+...+|+|
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLV-SADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcc-cCCCCCCCCccCC
Confidence 4334556789998 4554443 34688888854 4455553 4556778888887
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=1.8e-09 Score=110.30 Aligned_cols=227 Identities=13% Similarity=0.207 Sum_probs=148.3
Q ss_pred ceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCC--CEEEEEEecCCCEEEE-EeCC------CcEEEEE
Q 002234 670 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK--AVTGLAILQSGEMLYS-GSLD------KTARVWS 738 (949)
Q Consensus 670 ~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~--~V~~v~fspdg~~L~S-gs~D------g~I~vWd 738 (949)
...+++|+.| -++.|.++| .+||+.+-- +.....+.+.+ .+..+-| -.++|+- ||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~--ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF--KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch--hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 3456899987 666666555 899988642 12111111222 2222333 2345443 3332 4699999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec--CeEEEecC---CCCceEEEEeCCE--EE-EEECCC
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNS---SKYPKCLALVQGK--VY-CGCQDG 810 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~--g~i~~~~~---~~~v~~v~~~~~~--l~-sgs~Dg 810 (949)
=... .++.......+|.++.+..+.++..-.++..+....+ ..++.++. .+...++....+. |+ =|-.-|
T Consensus 82 D~k~--~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 82 DLKE--RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cccC--cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 4333 6666777788899888555544433333322222211 11222222 2233333333332 22 255679
Q ss_pred cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---CCCcEEEEEEc
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVS 887 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s 887 (949)
.|++-|+...+.- .+..+..|...|.+++.+.+|..+|++|..|.-|||||..+|..+..+. ....|++++||
T Consensus 160 qvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 160 QVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred eEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 9999999876652 1246788999999999999999999999999999999999999999998 46789999999
Q ss_pred CC--EEEEEECCCeEEEEECCC
Q 002234 888 SE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 888 ~d--~l~sgs~dg~I~vwd~~~ 907 (949)
|| +++++|+.|+++||.++.
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 99 899999999999998765
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=6.8e-10 Score=113.33 Aligned_cols=229 Identities=13% Similarity=0.186 Sum_probs=148.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec--
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-- 788 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~-- 788 (949)
...+++|+.|...++.|..+| .+||+.+.-+. .........-.+..+-+-.+..++--.|.. .-...+.+-+||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~--pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSR--PKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCC--CCCCCceEEEEecc
Confidence 345599999999999888887 89999875221 011111111111111111111111111110 000013445565
Q ss_pred ---------CCCCceEEEEeCCEEEEEECCCcEEEEECCC-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC
Q 002234 789 ---------SSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 858 (949)
Q Consensus 789 ---------~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg 858 (949)
....|..+.+.++++++.- .+.|.+|...+ .+.+..+.. ........+++-+.+..+++.-|..-
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et----~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET----RSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec----ccCCCceEeecCCCCceEEEcCCCcc
Confidence 3567888888888887764 57899998873 333322221 11112355555555666666655444
Q ss_pred CEEEEEECCCCee--EEeec-CCCcEEEEEEcCC--EEEEEECCCe-EEEEECCCCcEEEEeccccc-cceeEEEEeCCC
Q 002234 859 AAVKMWSTSNYNM--VGSLP-TLSEVRAMVVSSE--LVYLGCKGGT-VEIWDQKRQIRIETLQTGTS-GKVQCMALDDNE 931 (949)
Q Consensus 859 ~~I~iwd~~~~~~--~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~-I~vwd~~~~~~~~~l~~~h~-~~I~~l~~spdg 931 (949)
+.|+|-|+...+. ...+. |.+.|.|++.+-+ .+|++|..|+ |||||..+|+++..++.|.. ..|.+++||||+
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 5999999876554 23344 9999999999977 7999999997 89999999999999976643 379999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 002234 932 EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 932 ~~L~sgs~Dg~I~iWdl 948 (949)
.+|+++|+.|+|+||.+
T Consensus 239 s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSL 255 (346)
T ss_pred cEEEEEcCCCeEEEEEe
Confidence 99999999999999976
No 224
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.28 E-value=2.7e-12 Score=124.06 Aligned_cols=69 Identities=22% Similarity=0.391 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhc---------------CCCCCCCCCCCCCCCCCC
Q 002234 5 DNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER---------------GNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 5 ~~~~~~~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~---------------~~~~CP~c~~~~~~~~~~ 69 (949)
++.......+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..++...++
T Consensus 5 ~~~~~~~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 5 KDEDDTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred cccccceeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 33334444567789999999999999999999999999999999852 234799999999988885
Q ss_pred CccHH
Q 002234 70 KTNYV 74 (949)
Q Consensus 70 ~~n~~ 74 (949)
|.+.
T Consensus 85 -Piyg 88 (193)
T PLN03208 85 -PIYG 88 (193)
T ss_pred -Eeec
Confidence 7754
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.2e-09 Score=126.40 Aligned_cols=233 Identities=9% Similarity=-0.046 Sum_probs=150.2
Q ss_pred CCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeC---CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC
Q 002234 650 SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 650 g~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~---Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
..|.+||.+. ..+.+..|.+.+.+.+|+|| .|+..+. +..|.+||+.++.. ..+..+.+.+....|+|||+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCC
Confidence 3677888763 34556678889999999997 6665543 46899999998843 34445666788899999998
Q ss_pred EEE-EEeCCCc--EEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 724 MLY-SGSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 724 ~L~-Sgs~Dg~--I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
.|+ +.+.+|. |.+||+.++....+.. +...... ..|+|||+.++..+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~~~~~~~-------~~~spDG~~i~f~s~~------------------- 310 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTD--SPAIDTS-------PSYSPDGSQIVFESDR------------------- 310 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccC--CCCccCc-------eeEcCCCCEEEEEECC-------------------
Confidence 775 5566665 7777888875433322 2222222 3499999876433211
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCCeeEEeecCC
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTL 878 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~~~ 878 (949)
..+..|.+||+.++..... ..+...+....|+|++.+++..+.++ ..|.+||+.++. ...+...
T Consensus 311 ------~g~~~Iy~~d~~g~~~~~l-------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~ 376 (435)
T PRK05137 311 ------SGSPQLYVMNADGSNPRRI-------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSG 376 (435)
T ss_pred ------CCCCeEEEEECCCCCeEEe-------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCC
Confidence 0123577888876655322 12234456788999999988776543 368888976544 3444444
Q ss_pred CcEEEEEEcCC--EEEEEEC-C-----CeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 879 SEVRAMVVSSE--LVYLGCK-G-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 879 ~~v~~l~~s~d--~l~sgs~-d-----g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
..+....|+|| .++..+. . ..++++|+..+.. ..+. ..+.+...+|+|-
T Consensus 377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp~ 433 (435)
T PRK05137 377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSPL 433 (435)
T ss_pred CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc--CCCCccCcccCCC
Confidence 45678899998 4444332 2 3688889876654 4443 2345677788763
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.8e-10 Score=123.89 Aligned_cols=231 Identities=17% Similarity=0.291 Sum_probs=162.8
Q ss_pred ccCCCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeec--cceEEEEeCCCEEEEEEecCeE
Q 002234 708 EHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS--NSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~-Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+|...-+.|..+|||+|++ ||..--.|++||+..-.++.-... ....|.-...+ .+..+|..+.++|-....-|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-cccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 5888889999999999865 555677899999988543222211 12223222211 1123344444444333333333
Q ss_pred EEecCCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 785 KLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
.-...+..-+.+.++. --|++++....|+-+++..|..+ ..+......++++..++-..++++|+.+| .|.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~~hgLla~Gt~~g-~VE 200 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINEEHGLLACGTEDG-VVE 200 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccc------cccccccccceeeeecCccceEEecccCc-eEE
Confidence 3333444555555553 33888888889999999999988 45555668999999999999999999887 999
Q ss_pred EEECCCCeeEEeecCC------------CcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 863 MWSTSNYNMVGSLPTL------------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 863 iwd~~~~~~~~~~~~~------------~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
.||.++...+.++... ..|+++.|+.| .+++|+.+|.|.|||+++.+++..-..+..-+|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 9999988777666521 23999999997 799999999999999999998877754555589999997
Q ss_pred CC--CCEEEEEeCCCcEEEEe
Q 002234 929 DN--EEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 929 pd--g~~L~sgs~Dg~I~iWd 947 (949)
+. ++.++|. +...++|||
T Consensus 281 ~~~~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 281 DTDQQNKVVSM-DKRILKIWD 300 (703)
T ss_pred ccCCCceEEec-chHHhhhcc
Confidence 65 3556654 456789997
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.1e-09 Score=126.00 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=141.9
Q ss_pred CCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCC---CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC
Q 002234 650 SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 650 g~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
..|.+||.+. ....+..+.+.+.+.+|+|| .|+..+.+ ..|.+||+.+++...+ ....+.+....|+|||+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCC
Confidence 4566667652 33445577889999999997 66655532 3599999998843333 33344566889999999
Q ss_pred EEE-EEeCCCcEEEEEC--CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 724 MLY-SGSLDKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 724 ~L~-Sgs~Dg~I~vWd~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
.|+ +.+.+|...+|.+ .++....+ ..+....... .|+|||+.++.
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~-------~wSpDG~~l~f----------------------- 300 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRL--TQSSGIDTEP-------FFSPDGRSIYF----------------------- 300 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEEC--CCCCCCCcCe-------EEcCCCCEEEE-----------------------
Confidence 886 5677888777754 44432222 1122222222 39999987533
Q ss_pred CEEEEEECCCcEEEEE--CCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCC--EEEEEECCCCeeEEeec
Q 002234 801 GKVYCGCQDGAIQEID--LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd--~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~ 876 (949)
++..+|...+|. ..++...... + +........|+|++.+++..+.+++ .|.+||+.+++... +.
T Consensus 301 ----~s~~~g~~~Iy~~~~~~g~~~~lt-----~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt 368 (427)
T PRK02889 301 ----TSDRGGAPQIYRMPASGGAAQRVT-----F--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT 368 (427)
T ss_pred ----EecCCCCcEEEEEECCCCceEEEe-----c--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc
Confidence 222334445554 4444432211 1 1122345789999999887765542 69999998876543 33
Q ss_pred CCCcEEEEEEcCC--EEEEEE-CCC--eEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 877 TLSEVRAMVVSSE--LVYLGC-KGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs-~dg--~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
.........|+|| .++.++ ..| .+++.+. ++.....+. .+.+.+...+|+|-
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee-cCCCCCCCCccCCC
Confidence 3334467899999 455444 333 3666666 455555553 46667888889874
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=7.1e-12 Score=133.03 Aligned_cols=188 Identities=18% Similarity=0.263 Sum_probs=151.2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCC
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 792 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~ 792 (949)
-..+.++.+|.+|+.|+.-|.|-.+|+.++.+.+. ......|.++. |..+.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~v~Etv~Dv~-------~LHneq------------------- 183 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--INVMETVRDVT-------FLHNEQ------------------- 183 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeee--eehhhhhhhhh-------hhcchH-------------------
Confidence 35688999999999999999999999999864333 22345555555 433333
Q ss_pred ceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeE
Q 002234 793 PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 793 v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~ 872 (949)
+++......+++||-. |..+. .+..| ..|..+.|-|...++++++..| .++.-|+.+|+.+
T Consensus 184 ----------~~AVAQK~y~yvYD~~-GtElH------Clk~~-~~v~rLeFLPyHfLL~~~~~~G-~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 184 ----------FFAVAQKKYVYVYDNN-GTELH------CLKRH-IRVARLEFLPYHFLLVAASEAG-FLKYQDVSTGKLV 244 (545)
T ss_pred ----------HHHhhhhceEEEecCC-CcEEe------ehhhc-CchhhhcccchhheeeecccCC-ceEEEeechhhhh
Confidence 3344456678888854 44432 22222 5789999999999999999887 9999999999999
Q ss_pred Eeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 873 GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 873 ~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
..+. ..+.+..|.-+|- .+-+|..+|+|.+|.....+++..+. .|.++|.++++.++|+|++|.|.|..++|||+
T Consensus 245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 9988 5677888888886 67789999999999999999888884 79999999999999999999999999999997
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=2.4e-10 Score=119.53 Aligned_cols=210 Identities=13% Similarity=0.216 Sum_probs=153.4
Q ss_pred ccccccEEEEecCCCCeEEEecCC------ceeeecCCCCceEEEEEeC---CEEEEEeCC--CcEEEEecCCCceeeeE
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR---DKIFSGHSD--GTIKVWTGRGSILHLIQ 704 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~~s~---d~lasgs~D--g~I~vWd~~t~~~~~i~ 704 (949)
+.....+|+++-.+|.+.+|..+. ....+.. ..++..|.-.+ ..+++|+.. ..++|||+++. +.+.
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw 187 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIW 187 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccc--eeee
Confidence 334466888999999999998761 1112222 24455555554 488889999 89999999987 4554
Q ss_pred Eeccc---------CCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC
Q 002234 705 QIREH---------TKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 705 ~l~~H---------~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~ 773 (949)
+-+.- .-+++++.|-+. ...|++++.-+.+|+||++.+........-...++.++. ..|+|+
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~-------l~p~gn 260 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG-------LTPSGN 260 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee-------ecCCCc
Confidence 43321 124678889886 789999999999999999987422222222234444443 344443
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
.+++|..-|.+..||++++.... ..+.+..+.|.++..||.+.++++
T Consensus 261 ----------------------------~Iy~gn~~g~l~~FD~r~~kl~g-----~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 261 ----------------------------FIYTGNTKGQLAKFDLRGGKLLG-----CGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred ----------------------------EEEEecccchhheecccCceeec-----cccCCccCCcceEEEcCCCceEEe
Confidence 48889999999999999998874 346778899999999999999999
Q ss_pred EECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC
Q 002234 854 TSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 889 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d 889 (949)
++.| +.+||+|+.+.+++....-.+.++++.+.++
T Consensus 308 ~GLD-RyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 308 CGLD-RYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred eccc-eeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 9999 6999999999888777666677777777654
No 230
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.26 E-value=1e-10 Score=125.98 Aligned_cols=204 Identities=13% Similarity=0.144 Sum_probs=148.0
Q ss_pred ccEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEE
Q 002234 640 MVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 716 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v 716 (949)
...++.++.||.+.+.+-. ........|.+.|.+-.|+|| -|+++++||.|++|.-.+. ...++.....+|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---LRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---LRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---HHHHHhhcCceeEEE
Confidence 4578889999999988766 455667789999999999998 8999999999999997654 445566678899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEE
Q 002234 717 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCL 796 (949)
Q Consensus 717 ~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v 796 (949)
+|.|+++.++-+-. +.+.|=-+..+ ...+....|.+-|.++. |++.++
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n-~k~i~WkAHDGiiL~~~-------W~~~s~----------------------- 199 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAAN-SKIIRWRAHDGLVLSLS-------WSTQSN----------------------- 199 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccc-cceeEEeccCcEEEEee-------cCcccc-----------------------
Confidence 99998766555443 34544444333 24555556666666666 555554
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 797 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 797 ~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
.+++|+.|-..++||-. |..+ ..-..|..+|++++|.|+..| +.+|.+ +.++=. +
T Consensus 200 -----lI~sgGED~kfKvWD~~-G~~L------f~S~~~ey~ITSva~npd~~~-~v~S~n--t~R~~~----------p 254 (737)
T KOG1524|consen 200 -----IIASGGEDFRFKIWDAQ-GANL------FTSAAEEYAITSVAFNPEKDY-LLWSYN--TARFSS----------P 254 (737)
T ss_pred -----ceeecCCceeEEeeccc-Cccc------ccCChhccceeeeeeccccce-eeeeee--eeeecC----------C
Confidence 48889999999999965 4433 344568889999999999544 444432 555221 2
Q ss_pred CCCcEEEEEEcCC--EEEEEECCCeEEEE
Q 002234 877 TLSEVRAMVVSSE--LVYLGCKGGTVEIW 903 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~dg~I~vw 903 (949)
..+.|..++||+| .+++|+..|.+.+=
T Consensus 255 ~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 255 RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred CccceEEEEEcCCCceeeccccCceEEEe
Confidence 3567889999999 68888888876553
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.3e-09 Score=118.81 Aligned_cols=265 Identities=11% Similarity=0.092 Sum_probs=175.3
Q ss_pred cCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCC--CEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 665 SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~--~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
..|...-+.|..+|| .+++|.+--.|++||+..-. ..|..|.+ .|.-.-.+.|-..++---.|.+|-+-.-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccce----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 356777788889987 78888899999999998652 33444533 3444444445555555566666654322
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE----------EecC-CCCceEEEEeC--CEEEEE
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK----------LLNS-SKYPKCLALVQ--GKVYCG 806 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~----------~~~~-~~~v~~v~~~~--~~l~sg 806 (949)
.|......... .-.++.+ -.|....+.+++.....+ -+.. .+.++++..++ +.|++|
T Consensus 124 -~G~hy~~RIP~---~GRDm~y------~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 124 -YGRHYRTRIPK---FGRDMKY------HKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG 193 (703)
T ss_pred -cCeeeeeecCc---CCccccc------cCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence 22111111110 1111110 011112222222221111 1111 25677777764 778999
Q ss_pred ECCCcEEEEECCCCceeeeecccccccCCCC-----CEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC--CC
Q 002234 807 CQDGAIQEIDLATGTFATIQTGHRKLLGKAN-----PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LS 879 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--~~ 879 (949)
+.||.|..||.++......+........|.+ .|+++.|++++..+++|..+| .+.|||+++.+++..-.| ..
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCcc
Confidence 9999999999998877655544344444443 499999999999999999997 999999999988877765 46
Q ss_pred cEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 880 EVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 880 ~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
+|..+.|.+. -.+.......++|||-.+|+....+. ....++.+++-|++-+++++.+++.+..|
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 7888888654 34444456789999999999998885 33459999999999999999998877655
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1e-09 Score=126.39 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=130.7
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
..|.+||..+. ..+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+... .+.+...
T Consensus 176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~----- 245 (427)
T PRK02889 176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAP----- 245 (427)
T ss_pred cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccce-----
Confidence 46777787554 334455678889999999999999887753 3599999998864433322 2333333
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEE--ECCCCceeeeecccccccCCCCCEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI--DLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iw--d~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
.|+|||+.++ ++.+.+|...+| |..++.. ..+..+.......
T Consensus 246 --~~SPDG~~la---------------------------~~~~~~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~ 289 (427)
T PRK02889 246 --AWSPDGRTLA---------------------------VALSRDGNSQIYTVNADGSGL-------RRLTQSSGIDTEP 289 (427)
T ss_pred --EECCCCCEEE---------------------------EEEccCCCceEEEEECCCCCc-------EECCCCCCCCcCe
Confidence 3999998753 334556655555 4544443 2333344455677
Q ss_pred EEeCCceEEEEEECCCCEEEEEEC--CCCeeEEeecCCCcEEEEEEcCC--EEEEEECCC---eEEEEECCCCcEEEEec
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg---~I~vwd~~~~~~~~~l~ 915 (949)
.|+||+..++..+..++...+|.+ .++................|+|| +++..+.++ .|.+||+.+++... +.
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt 368 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT 368 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc
Confidence 899999988766654335566654 44443222222333446789998 666555443 69999998887543 32
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
.+ .......|+|||+.|+.++.++
T Consensus 369 ~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 369 DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CC--CCccCceECCCCCEEEEEEecC
Confidence 22 2346789999999988777554
No 233
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=1e-11 Score=135.29 Aligned_cols=75 Identities=21% Similarity=0.476 Sum_probs=67.1
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
...+..++.||||.++|.+||+++|||+||..||..|+... ..||.|+..+....+ ++|+.|.++|+.|+...+.
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~L-r~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKL-RSNWLVSEIVESFKNLRPS 94 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccC-ccchHHHHHHHHHHHhhHH
Confidence 35678999999999999999999999999999999999764 489999999988888 5999999999999876654
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.22 E-value=5.8e-10 Score=120.70 Aligned_cols=159 Identities=15% Similarity=0.265 Sum_probs=124.2
Q ss_pred EeCCCEEEEEEecCeEEEecC----------------CCCceEEEEeC---CEEEEEECCCcEEEEECCCC---------
Q 002234 769 IPQGAGIKVHLRNGKTKLLNS----------------SKYPKCLALVQ---GKVYCGCQDGAIQEIDLATG--------- 820 (949)
Q Consensus 769 sp~g~~l~~~~~~g~i~~~~~----------------~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~--------- 820 (949)
.|.|-.+.++...|.+.+.++ +..++|+.+-+ +.++++-.+|.+.+||....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 456667788888888877663 35688998875 56888999999999976311
Q ss_pred -----ceeeeec--------ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEE
Q 002234 821 -----TFATIQT--------GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVV 886 (949)
Q Consensus 821 -----~~~~~~~--------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 886 (949)
....+.. +...+.--.+.|+.++|+||+.++++.+.|| .+||||..+.+++..++ --+...|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-fLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDG-FLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCc-eEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 1111100 0011111235789999999999999999998 99999999988877776 4578999999
Q ss_pred cCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 887 SSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 887 s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
||| +|++|++|.-|.||.+...+.+..= .+|+++|+.|+|.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVARG-qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVARG-QGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEEec-cccccceeeEeecc
Confidence 999 9999999999999999999998888 49999999999983
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=5.9e-10 Score=115.25 Aligned_cols=193 Identities=15% Similarity=0.228 Sum_probs=138.2
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec-ccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCee
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
..+..++|++. .++++..|-+|++||-... +...++ .-...|+|++|-|. ++.|+.|+..| |.+|.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 34667888885 7889999999999998874 333333 23567999999994 56788888766 89998765210
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
...++ .+...+. .+.
T Consensus 175 -------~~r~~------------------------------------------------~~~s~~~--------~qv-- 189 (445)
T KOG2139|consen 175 -------ANRNI------------------------------------------------RMMSTHH--------LQV-- 189 (445)
T ss_pred -------ccccc------------------------------------------------ccccccc--------hhh--
Confidence 00000 0000000 011
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEE
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVE 901 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~ 901 (949)
.+..+| .+|+++.|.+|+..+++++.++..|.|||..++..+.-.. ..+.+.-+.|||| ++++++-|+..+
T Consensus 190 -----l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 190 -----LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred -----eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceee
Confidence 123455 6899999999999999999999999999999998877664 6788999999999 899999999999
Q ss_pred EEECCC-CcEEEEeccccccceeEEEEeCCCCEEEEEe
Q 002234 902 IWDQKR-QIRIETLQTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 902 vwd~~~-~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
+|+... .....-. . ..+.|...+|+|+|++|..+.
T Consensus 264 lw~e~q~wt~erw~-l-gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 264 LWQENQSWTKERWI-L-GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred eehhcccceeccee-c-cCCceeeeeecCCCCEEEEEE
Confidence 996543 3333333 2 344899999999998776544
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.4e-09 Score=114.01 Aligned_cols=251 Identities=9% Similarity=0.123 Sum_probs=174.1
Q ss_pred EEEEecCCCCeEEEecCC--------ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCc--eeeeEEecccCC
Q 002234 642 KVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTK 711 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~--~~~i~~l~~H~~ 711 (949)
.+...+.|..+..+...+ .........++|..+......|+++-.+|.+.+|..+.+. -..+..+..| .
T Consensus 71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~ 149 (412)
T KOG3881|consen 71 VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-P 149 (412)
T ss_pred EeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-C
Confidence 444444555555555442 1123445677888888888899999999999999988542 1234444433 4
Q ss_pred CEEEEEEecC-CCEEEEEeCC--CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 712 AVTGLAILQS-GEMLYSGSLD--KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 712 ~V~~v~fspd-g~~L~Sgs~D--g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
.+..+.-++. ...+++||.. ..+++||+++.+ +.......+..-.. + .+.+|
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~----------------L-------rVPvW- 204 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLG----------------L-------RVPVW- 204 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCcccc----------------c-------eeeee-
Confidence 5666777774 4566668888 889999999863 33322211111111 1 11222
Q ss_pred CCCCceEEEEeC----CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE
Q 002234 789 SSKYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 864 (949)
Q Consensus 789 ~~~~v~~v~~~~----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw 864 (949)
++.+.|-+ ..+++++.-+.+++||.+.+.... ..+.--..+++++...|++.++.++..-| .+..|
T Consensus 205 ----~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-----~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-~l~~F 274 (412)
T KOG3881|consen 205 ----ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-----AQFDFLENPISSTGLTPSGNFIYTGNTKG-QLAKF 274 (412)
T ss_pred ----eccceecCCCCCceEEEEecceeEEEecCcccCcce-----eEeccccCcceeeeecCCCcEEEEecccc-hhhee
Confidence 22333432 369999999999999999766432 23333467899999999999999998776 99999
Q ss_pred ECCCCeeEEe-ec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 865 STSNYNMVGS-LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 865 d~~~~~~~~~-~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
|++.++.... +. ..+.+.++..+|. ++++++-|..+||+|+.+.+++.... -...++++-+.++
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 9999998887 55 4688999999998 89999999999999999977776653 3446777777654
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=124.21 Aligned_cols=249 Identities=15% Similarity=0.187 Sum_probs=176.2
Q ss_pred ceeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEE
Q 002234 660 LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTAR 735 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~ 735 (949)
....+.+|.|.|..|.|+. +.++||+.|..|.+||...+. ..+.-..+|...|..-.|-|. ..-+++++.||.|+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3456789999999999997 499999999999999999883 334445689999999999883 46799999999999
Q ss_pred EEECCCCe-eE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEE
Q 002234 736 VWSIGNEE-IH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 813 (949)
Q Consensus 736 vWd~~~~~-~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~ 813 (949)
+=.+.... .. ......|.++|..++ .-|+. +..+++++.|+.+.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhkla-------v~p~s---------------------------p~~f~S~geD~~v~ 258 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLA-------VEPDS---------------------------PKPFLSCGEDAVVF 258 (559)
T ss_pred eeeeccccceecceecccccCccceee-------ecCCC---------------------------CCccccccccccee
Confidence 87754322 11 333445566666655 33322 23589999999999
Q ss_pred EEECCCCceeeeecccccccCCCC---CEEEEEEeCCce-EEEEEECCCCEEEEEECCCCee------EEeec-------
Q 002234 814 EIDLATGTFATIQTGHRKLLGKAN---PVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNM------VGSLP------- 876 (949)
Q Consensus 814 iwd~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~~~------~~~~~------- 876 (949)
-+|++.+.....+.. -..+.. ..+.++.+|... .+++++.|. .+++||.+.... +..+.
T Consensus 259 ~~Dlr~~~pa~~~~c---r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d 334 (559)
T KOG1334|consen 259 HIDLRQDVPAEKFVC---READEKERVGLYTIAVDPRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVED 334 (559)
T ss_pred eeeeccCCccceeee---eccCCccceeeeeEecCCCCccccccCChhh-hhhhhcccchhhccccchhhhcCCcccccc
Confidence 999998776543321 112222 567888887655 677777775 999999875322 23332
Q ss_pred CCCcEEEEEEcCC--EEEEEECCCeEEEEECCC--C----------cEEEEecccccc--ceeEEEE-eCCCCEEEEEeC
Q 002234 877 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR--Q----------IRIETLQTGTSG--KVQCMAL-DDNEEFLVIGTS 939 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~--~----------~~~~~l~~~h~~--~I~~l~~-spdg~~L~sgs~ 939 (949)
....|++++++.+ -+.+.-.|-.|+++...- | ..+.....||.+ .|.++-| -|...|+++|++
T Consensus 335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 2456999999966 466666677899996443 2 223331247765 5777765 578899999999
Q ss_pred CCcEEEEe
Q 002234 940 DGRIQAWG 947 (949)
Q Consensus 940 Dg~I~iWd 947 (949)
=|.|.||+
T Consensus 415 CGhIFiW~ 422 (559)
T KOG1334|consen 415 CGHIFIWD 422 (559)
T ss_pred cceEEEEe
Confidence 99999998
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=8.4e-11 Score=126.98 Aligned_cols=247 Identities=16% Similarity=0.173 Sum_probs=158.6
Q ss_pred HHHHHhhHhhhccccccccccEEEEecCCCCeEEEecCC---ceeeecCCCCceEEEEEeC---C-EEEEEeCCCcEEEE
Q 002234 621 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKVW 693 (949)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~~s~---d-~lasgs~Dg~I~vW 693 (949)
+..+.+|...++...+..+|..|++|+.|-.+.|||+-. ...+..||...|.++.|-| | .++||..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 345677888888899999999999999999999999862 3456679999999999998 3 99999999999999
Q ss_pred ecCCC--------ceeeeEEecccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 694 TGRGS--------ILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 694 d~~t~--------~~~~i~~l~~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
|+... -......+..|+..|..++-.|++ +.+.+++.||+|+-+|++... .|.... .-++..+.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph-~c~p~~--~~~~~l~n---- 195 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH-VCNPDE--DCPSILVN---- 195 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc-cCCccc--cccHHHHH----
Confidence 99841 124566677899999999999987 889999999999999998742 111000 00111111
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC---CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 841 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 841 (949)
+.++- -...|+.+++ ..|++|+.|-..++||.+.........+.. ......+..+
T Consensus 196 ---y~~~l------------------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~-~~~pp~~~~c 253 (758)
T KOG1310|consen 196 ---YNPQL------------------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM-NTCPPKDCRC 253 (758)
T ss_pred ---hchhh------------------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc-cCCCCcccch
Confidence 11110 1233445543 469999999999999965322111000000 0011112223
Q ss_pred EEE-eCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 842 LQV-HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 842 l~~-~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
+.+ .|++. ...+| .+.. -...++-+.|+|+ -+.+.-..-.|+++|+..++....+
T Consensus 254 v~yf~p~hl----kn~~g-n~~~-------------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 254 VRYFSPGHL----KNSQG-NLDR-------------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred hheecCccc----cCccc-cccc-------------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 332 34333 11111 0000 0123567889999 3444444557999999887755444
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=5.9e-08 Score=110.35 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=170.0
Q ss_pred cccEEEEecCCCCeEEEecCCcee--eecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEE
Q 002234 639 EMVKVLSNGHDSSADFWNHRELVH--VDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 716 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~~~--~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v 716 (949)
.+.+++.++.++.+.-+|..+... ................+.++.++.||.+..+|..+| +.+...... +.+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecC
Confidence 466788888899999998763222 222222222234445568889999999999999999 556554322 222221
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeee------eeccceEEEEe-CCCEEEEEEecCeEEEecC
Q 002234 717 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL------AVSNSILCFIP-QGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 717 ~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l------~~~~~~~~fsp-~g~~l~~~~~~g~i~~~~~ 789 (949)
-.. .+..++.++.||.+..||.++|+..-.. ....+.... ......+.+.. +|...+....+|. .+|..
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~-~~W~~ 216 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTY--SRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQ-PLWEQ 216 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEE--ccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCC-Eeeee
Confidence 111 3457777888999999999998632211 111111100 11111111211 1222222222332 23321
Q ss_pred CC--------------CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 790 SK--------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 790 ~~--------------~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
.. ...+..+.++.+++++.+|.+..||..+|+...... ... ........+..| .++
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~~----~~~p~~~~~~vy--v~~ 286 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD----ASS----YQGPAVDDNRLY--VTD 286 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec----cCC----ccCceEeCCEEE--EEC
Confidence 10 011223456789999999999999999998765432 111 122233343333 344
Q ss_pred CCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCE
Q 002234 856 LDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 933 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~ 933 (949)
.+| .+..+|..+++.+.... ......+.....+.+++++.+|.++++|..+++.+.++..+......+..+. + +.
T Consensus 287 ~~G-~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~ 363 (377)
T TIGR03300 287 ADG-VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DG 363 (377)
T ss_pred CCC-eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CE
Confidence 565 99999999998887663 2223344455667899999999999999999999988853322222333333 3 45
Q ss_pred EEEEeCCCcEEEE
Q 002234 934 LVIGTSDGRIQAW 946 (949)
Q Consensus 934 L~sgs~Dg~I~iW 946 (949)
|+.++.||.|..|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 8889999999876
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.18 E-value=9.4e-09 Score=114.90 Aligned_cols=252 Identities=12% Similarity=0.139 Sum_probs=156.5
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeee
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 759 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l 759 (949)
++++-..+|.|.|.|..+. +.+.++......-..+.|+|||+++++++.||.|.++|+.+++ .+..........++
T Consensus 8 ~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE-SSEEEEE
T ss_pred EEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEecCCCcceE
Confidence 4456678899999999998 7888887655444557899999999999999999999999985 33333334445555
Q ss_pred eeccceEEEEeCCCEEEEEE-ecCeEEEecCCC-------------------CceEEEEeC--CEEEEEEC-CCcEEEEE
Q 002234 760 AVSNSILCFIPQGAGIKVHL-RNGKTKLLNSSK-------------------YPKCLALVQ--GKVYCGCQ-DGAIQEID 816 (949)
Q Consensus 760 ~~~~~~~~fsp~g~~l~~~~-~~g~i~~~~~~~-------------------~v~~v~~~~--~~l~sgs~-Dg~I~iwd 816 (949)
. +++||++++++. ..+.+.++|... .+..+..++ ..++..-. .+.|-+.|
T Consensus 84 ~-------~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 84 A-------VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp E-------E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred E-------EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 5 999999998876 568888888432 122333332 22444434 36676777
Q ss_pred CCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-----CCCcEEEE-------
Q 002234 817 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAM------- 884 (949)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l------- 884 (949)
....+.... .............|+|+++|+..+....+.|-++|..+++.+..+. |......+
T Consensus 157 y~d~~~~~~-----~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 157 YSDPKNLKV-----TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp TTTSSCEEE-----EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEE
T ss_pred eccccccce-----eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcce
Confidence 666543321 1222335677899999999877765555699999999988776554 22222222
Q ss_pred ----EEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE----eCCCcEEEEeCC
Q 002234 885 ----VVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG----TSDGRIQAWGLS 949 (949)
Q Consensus 885 ----~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg----s~Dg~I~iWdl~ 949 (949)
.-...+.++.-..+.+.+||..+.+.++++. ...+. .-+..+||++++.+. ..+++|.++|..
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 2112233233334466789999999999996 33444 778889999999988 455889999863
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=1.4e-09 Score=111.85 Aligned_cols=307 Identities=15% Similarity=0.172 Sum_probs=191.9
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecCCcee----eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVH----VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~----~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~ 698 (949)
+++...+....+.+--.-+++.+.|.++|||--....+ +...-..+++++.+.++ .|+.|-..|++.-+.+...
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 33344444444444455678999999999997653222 22234678999999997 8999999999998865422
Q ss_pred --ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 699 --ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 699 --~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
+....+.+..|...|..+-|+....++++.+.|..+.---.+.+. .+........-.... |.-. +..
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~--~lg~Y~~~~~~t~~~-------~d~~--~~f 169 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN--RLGGYNFETPASALQ-------FDAL--YAF 169 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC--cccceEeeccCCCCc-------eeeE--EEE
Confidence 125677788999999999999999999999999877433333332 000000000000000 0000 112
Q ss_pred EEEecCeE--------------EEecCCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 777 VHLRNGKT--------------KLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 777 ~~~~~g~i--------------~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
++...|.+ ++-.+...+.++++.+ +.+++|..|..+.+||+..++-.. ..+.+|...|.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-----~el~gh~~kV~ 244 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-----YELQGHNDKVQ 244 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-----eeeccchhhhh
Confidence 22222222 2234567788889886 569999999999999998766543 45678899999
Q ss_pred EEEEeCCceEEEEEECCCCEEEEEECCCCeeEE----------ee--------------------cCC----CcEEEEEE
Q 002234 841 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG----------SL--------------------PTL----SEVRAMVV 886 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~----------~~--------------------~~~----~~v~~l~~ 886 (949)
.+..-+-...+.+++.|| .|.+||.+...... .. .|+ +...+..-
T Consensus 245 ~l~~~~~t~~l~S~~edg-~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c 323 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDG-GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKC 323 (404)
T ss_pred hhhhhhhheeeeeccCCC-eEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccc
Confidence 999988888999999997 99999986432110 00 000 11111111
Q ss_pred cCC--EEEEEECCCeEEEEECC-------CCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 887 SSE--LVYLGCKGGTVEIWDQK-------RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 887 s~d--~l~sgs~dg~I~vwd~~-------~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.+ ...+-+..-.+++-|.- +..++..+...|. .|+.+.+..+-..|+|+|.|..|+|||+.
T Consensus 324 ~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~t-gItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 324 SSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKT-GITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccCccccccccceeEEEEecccchhhhcCCCCcccccccccc-ceeEEEhhhhccceeecCCceEEEEEech
Confidence 111 11222222234443321 1234455533343 69999998888899999999999999973
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.15 E-value=8.3e-09 Score=119.16 Aligned_cols=205 Identities=17% Similarity=0.108 Sum_probs=136.6
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
..|.++|..+. ..+.+..+...+.+..|+|||++|+.++.+ ..|++||+.+++...+.. ....+...
T Consensus 170 ~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~----- 239 (417)
T TIGR02800 170 YELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAP----- 239 (417)
T ss_pred ceEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccce-----
Confidence 45888888655 334455677789999999999999887754 479999999885433322 22333333
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC--CcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
.|+|||+.++. +.+.+ ..|.+||+.++.... +..+.......
T Consensus 240 --~~spDg~~l~~---------------------------~~~~~~~~~i~~~d~~~~~~~~-------l~~~~~~~~~~ 283 (417)
T TIGR02800 240 --AFSPDGSKLAV---------------------------SLSKDGNPDIYVMDLDGKQLTR-------LTNGPGIDTEP 283 (417)
T ss_pred --EECCCCCEEEE---------------------------EECCCCCccEEEEECCCCCEEE-------CCCCCCCCCCE
Confidence 38999986532 22333 458889988876532 22333344567
Q ss_pred EEeCCceEEEEEECCCC--EEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCC---eEEEEECCCCcEEEEec
Q 002234 843 QVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg---~I~vwd~~~~~~~~~l~ 915 (949)
.|++++..++..+..++ .|.+||+.+++......+........|+|| +++.++.++ .|.+||+.++.. ..+.
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~ 362 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT 362 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc
Confidence 89999988776654332 688888887765443335566778899988 666666655 799999988654 3332
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
.+ .......|+|||++|+..+.++
T Consensus 363 -~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 363 -DT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -CC-CCCCCceECCCCCEEEEEEeCC
Confidence 12 2345668999999888877654
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=4.5e-09 Score=106.72 Aligned_cols=109 Identities=17% Similarity=0.290 Sum_probs=86.4
Q ss_pred CCCEEEEEEeCCceEEEEEE-CCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEEC---CCeEEEEECCCCc
Q 002234 836 ANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQI 909 (949)
Q Consensus 836 ~~~V~~l~~~~~~~~l~s~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~---dg~I~vwd~~~~~ 909 (949)
.++|.+++|+|++..++... .-.+.|.+||++ ++.+..+. ...++.+.|+|+ ++++|+. .|.|.+||.++.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 45799999999988765442 222489999996 66666665 467789999998 7777764 4679999999999
Q ss_pred EEEEeccccccceeEEEEeCCCCEEEEEeC------CCcEEEEeCC
Q 002234 910 RIETLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 949 (949)
Q Consensus 910 ~~~~l~~~h~~~I~~l~~spdg~~L~sgs~------Dg~I~iWdl~ 949 (949)
.+.+.. |. .++.++|||||+++++++. |+.++||+++
T Consensus 137 ~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred Eeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 888874 44 4789999999999999875 7889999863
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=1.2e-07 Score=105.98 Aligned_cols=267 Identities=11% Similarity=0.198 Sum_probs=166.6
Q ss_pred CCeEEEecC--C----ceeeecCCCCceEEEEEeCC--EEEEEeC----CCcEEEEecCC--CceeeeEEecccCCCEEE
Q 002234 650 SSADFWNHR--E----LVHVDSSENGKVLSIACFRD--KIFSGHS----DGTIKVWTGRG--SILHLIQQIREHTKAVTG 715 (949)
Q Consensus 650 g~I~vWd~~--~----~~~~~~~h~~~V~~l~~s~d--~lasgs~----Dg~I~vWd~~t--~~~~~i~~l~~H~~~V~~ 715 (949)
+.|.+|+++ + .... ..-......++++|+ +|++... +|.|..|++.. +.+..+.........-..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 788888883 1 1111 123455677888885 7777665 57999998875 555666666545556678
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEECCC-CeeEEEE-eecCC--Cce--eeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 716 LAILQSGEMLYSGSL-DKTARVWSIGN-EEIHCVQ-VHDIK--DQI--QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 716 v~fspdg~~L~Sgs~-Dg~I~vWd~~~-~~~~~~~-~~~~~--~~v--~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
++++|++++|+++.. +|+|.++++.. |.+.... ...+. ++. ......+..+.|+|+|+++.+.
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~---------- 161 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP---------- 161 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE----------
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE----------
Confidence 999999999988875 89999999987 4422221 11110 000 0011112234488888875332
Q ss_pred CCCCceEEEEeCCEEEEEECCCcEEEEECCCCc--eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 789 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT--FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 789 ~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
--....|.+|++.... .... . ............+.|+|++.++......+++|.++++
T Consensus 162 -----------------dlG~D~v~~~~~~~~~~~l~~~-~--~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 162 -----------------DLGADRVYVYDIDDDTGKLTPV-D--SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp -----------------ETTTTEEEEEEE-TTS-TEEEE-E--EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred -----------------ecCCCEEEEEEEeCCCceEEEe-e--ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 2234578888887655 3211 0 1112344668899999999988887777779999998
Q ss_pred C--CCe--eEEeec-------CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECC--CCc--EEEEeccccccceeEEEEe
Q 002234 867 S--NYN--MVGSLP-------TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK--RQI--RIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 867 ~--~~~--~~~~~~-------~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~--~~~--~~~~l~~~h~~~I~~l~~s 928 (949)
. ++. .+..+. .......+.++|| +++++. .+++|.+|+++ +++ .+..+.. .....+.++++
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s 300 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFS 300 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEe
Confidence 8 443 222222 1236888999998 666655 56789999983 333 3344432 23357999999
Q ss_pred CCCCEEEEEe-CCCcEEEEeC
Q 002234 929 DNEEFLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 929 pdg~~L~sgs-~Dg~I~iWdl 948 (949)
|||++|++++ .++.|.+|++
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEEE
Confidence 9999999887 5678999876
No 245
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.8e-10 Score=116.80 Aligned_cols=272 Identities=16% Similarity=0.208 Sum_probs=189.5
Q ss_pred hchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhCh----hhHHHHHHhcCCCh
Q 002234 164 LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRPST 239 (949)
Q Consensus 164 l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~----~~Aa~~l~~L~~~~ 239 (949)
++..+.+..+.. |..+.+..+++++.-+|++| ...+++++.++ ..|.++.||.+||.|. .-+.-+|-++....
T Consensus 163 iA~sGaL~pltr-LakskdirvqrnatgaLlnm-Ths~EnRr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 163 IARSGALEPLTR-LAKSKDIRVQRNATGALLNM-THSRENRRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhccchhhhHh-hcccchhhHHHHHHHHHHHh-hhhhhhhhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 556666666666 77799999999999999999 55666788888 7899999999999993 34555788877666
Q ss_pred HHHHHhh-----hhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccH
Q 002234 240 RTLIEMD-----MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA 314 (949)
Q Consensus 240 ~~~~~~~-----~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~ 314 (949)
.+..-+. .+|.||.+...|++.- +.+++ ++ | ..++...+-...|++.|++|.+|+++++..
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kv-----kcqA~-lA-L------rnlasdt~Yq~eiv~ag~lP~lv~Llqs~~- 305 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKV-----KCQAG-LA-L------RNLASDTEYQREIVEAGSLPLLVELLQSPM- 305 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHH-----HHHHH-HH-H------hhhcccchhhhHHHhcCCchHHHHHHhCcc-
Confidence 5443333 4499999998886431 22222 22 1 234667788889999999999999997543
Q ss_pred HHHHHHHHHHHHhh---hccCCchhhHhhhcCchhhHHHHHhcCCc-chhHHHHHHHHhhhccccchhHHHHHHhhccCC
Q 002234 315 EERIAAVGILLRCM---QEDGKCRNSIADKAELAPVMESFMAASDG-ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGT 390 (949)
Q Consensus 315 ~~~~~a~~~l~~~~---~~~~~~r~~~~~~~~~~~l~~ll~~~~~~-~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~ 390 (949)
.+..+++. -|+ .--.--...|++.|-+.|||.||+.+... .+++|+..|-+|....|+ ..+.|.+.|.
T Consensus 306 -~plilasV--aCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~-----n~~~i~esgA 377 (550)
T KOG4224|consen 306 -GPLILASV--ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH-----NVSVIRESGA 377 (550)
T ss_pred -hhHHHHHH--HHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh-----hhHHHhhcCc
Confidence 33333331 233 22223345688999999999999997555 899999999999775333 2445788888
Q ss_pred chhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcc
Q 002234 391 YSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 391 ~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~ 465 (949)
+ .-+..++..+|-+-|.-..+.+.||.+-+++ |.-....+-++.||.-+.+.+ .++|--||.||.||...
T Consensus 378 i---~kl~eL~lD~pvsvqseisac~a~Lal~d~~-k~~lld~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 378 I---PKLIELLLDGPVSVQSEISACIAQLALNDND-KEALLDSGIIPILIPWTGSES-EEVRGNAAAALINLSSD 447 (550)
T ss_pred h---HHHHHHHhcCChhHHHHHHHHHHHHHhcccc-HHHHhhcCCcceeecccCccc-hhhcccHHHHHHhhhhh
Confidence 8 4588899999999888888888999654333 222222223455555543332 35677899999997543
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.8e-08 Score=107.92 Aligned_cols=291 Identities=12% Similarity=0.127 Sum_probs=174.1
Q ss_pred ccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEE-----EeCC-----CcEEEEecCCCcee
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFS-----GHSD-----GTIKVWTGRGSILH 701 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~las-----gs~D-----g~I~vWd~~t~~~~ 701 (949)
..++..|. ++..+.+..++|++.......++--...++++.|+|- +|.+ -..| -.+.+|+++++ .
T Consensus 40 ~~~S~~G~-lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~--~ 116 (566)
T KOG2315|consen 40 FAYSNNGR-LFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG--V 116 (566)
T ss_pred EEEcCCCc-EEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc--e
Confidence 33444444 4455677788999887542333333338999999993 4443 1223 34679999997 4
Q ss_pred eeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC--EEEEEE
Q 002234 702 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA--GIKVHL 779 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~--~l~~~~ 779 (949)
....++.....-|+..|++|..+.+-- ..+.+.+|+...-+ .....-+...+..+. ++|.+. .+++..
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~--~~~~kl~~~~i~~f~-------lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFK--TIQHKLSVSGITMLS-------LSPGPEPPFVAVYV 186 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcc--ceeeeeeccceeeEE-------ecCCCCCceEEEEc
Confidence 444443322222789999886543222 23569999988743 222222244555555 444322 222211
Q ss_pred -----ecCeEEEecCCC---------------CceEEEEeC---CEEEE--EECC---------CcEEEEECCCCceeee
Q 002234 780 -----RNGKTKLLNSSK---------------YPKCLALVQ---GKVYC--GCQD---------GAIQEIDLATGTFATI 825 (949)
Q Consensus 780 -----~~g~i~~~~~~~---------------~v~~v~~~~---~~l~s--gs~D---------g~I~iwd~~~~~~~~~ 825 (949)
.-+.+++|.... .-..+.++. +.|+. ..-| .+++++++.......
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V- 265 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV- 265 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE-
Confidence 124556665320 112233332 12332 2223 357777777333321
Q ss_pred ecccccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEEC---CCe
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---GGT 899 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~---dg~ 899 (949)
-....+||+++.|++++. +.++.+.--..+.|||++ +.++..+. .++=+++-|+|. +++.++. .|.
T Consensus 266 ------~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 266 ------PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred ------ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCc
Confidence 122358999999998875 444444433589999986 44554443 455677889887 5555554 389
Q ss_pred EEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC------CCcEEEEeCC
Q 002234 900 VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 949 (949)
Q Consensus 900 I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~------Dg~I~iWdl~ 949 (949)
|-|||+.+.+++.++... .-+-+.|+|||++++|++. |+.++||+++
T Consensus 338 mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999999998888522 3466789999999999975 7889999864
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=5.6e-09 Score=121.85 Aligned_cols=259 Identities=13% Similarity=0.168 Sum_probs=171.6
Q ss_pred cEEEEecCCCCeEEEecCC--------ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCC
Q 002234 641 VKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 712 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 712 (949)
.|++. +.-..|.+||... ..+....|...=.-- ....+++++..-+.+.+=+.... .... -.+.
T Consensus 18 ~~lla-g~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-l~~~~~v~~~~~~~v~~~~~~~~---~~~~---~s~w 89 (967)
T KOG0974|consen 18 DYLLA-GSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-LLSGKIVTCAKSDEVYVKEASNQ---IIER---FSDW 89 (967)
T ss_pred ceeee-cCCCceEEeeCCchhHhhhhhhhcccccccccccce-eccceEEEEEeecceeecchhhh---hhhh---cccc
Confidence 45544 3445688898873 222333441110000 11125555555444443333221 2222 2344
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCC
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 792 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~ 792 (949)
|....+..+...++.++.+..+.+||...+. ......+.....-.. .+..+...
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~--~~~~i~~~er~~l~~-------------~~~~g~s~----------- 143 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSS--VLSKIQSDERCTLYS-------------SLIIGDSA----------- 143 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCc--eehhcCCCceEEEEe-------------EEEEeccC-----------
Confidence 5445566677788888999999999998763 111111111111100 00000000
Q ss_pred ceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeE
Q 002234 793 PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 793 v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~ 872 (949)
.+=++++|+.-+.|.+|+....+.. ..+.+|.+.|.++.++.|+.++++.|.| +++++|++.+.+..
T Consensus 144 ------~~~~i~~gsv~~~iivW~~~~dn~p------~~l~GHeG~iF~i~~s~dg~~i~s~SdD-RsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 144 ------EELYIASGSVFGEIIVWKPHEDNKP------IRLKGHEGSIFSIVTSLDGRYIASVSDD-RSIRLWPIDSREVL 210 (967)
T ss_pred ------cEEEEEeccccccEEEEeccccCCc------ceecccCCceEEEEEccCCcEEEEEecC-cceeeeeccccccc
Confidence 0114888999999999998833322 3578999999999999999999999987 69999999998766
Q ss_pred E--eecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccc-cceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 873 G--SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 873 ~--~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~-~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
. -|.|...++.+.|.|+.+++++.|.+.++|+.+ +..+..+. +|. ..|+.++..++....+|++.||.+++||+
T Consensus 211 ~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 211 GCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred CcccccccceeEEEEeccceeEEeccceEEEEEecc-cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5 455889999999999999999999999999764 44455774 554 48999999999999999999999999986
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-08 Score=104.40 Aligned_cols=281 Identities=14% Similarity=0.213 Sum_probs=174.1
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCC-------ceeeecCCC------------CceEEEEEeCC----EEEEEeC
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSEN------------GKVLSIACFRD----KIFSGHS 686 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~------------~~V~~l~~s~d----~lasgs~ 686 (949)
++...-+..+|.+|++|..+|.|.++.-.. ....++.|. ..|..+.|.++ .+...+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 444555666899999999999999997552 223344453 46888999874 7778889
Q ss_pred CCcEEEEecCCCceee---------------------------------eEEe-cccCCCEEEEEEecCCCEEEEEeCCC
Q 002234 687 DGTIKVWTGRGSILHL---------------------------------IQQI-REHTKAVTGLAILQSGEMLYSGSLDK 732 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~---------------------------------i~~l-~~H~~~V~~v~fspdg~~L~Sgs~Dg 732 (949)
|.+|++|.+.....+. .+.+ ..|+--|+++.++.|+..++|+. |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999876431111 1111 24777788888888888777754 56
Q ss_pred cEEEEECCCCe--eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC---CEEEEEE
Q 002234 733 TARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGC 807 (949)
Q Consensus 733 ~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~---~~l~sgs 807 (949)
.|.+|+++--. ...+...+++ ...+ ..-|++..|+| +.++-.+
T Consensus 186 RINLWnlei~d~sFnIVDIKP~n--mEeL------------------------------teVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPAN--MEEL------------------------------TEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeeccccccCCceeEEEccccC--HHHH------------------------------HHHHhhhccCHhHccEEEEec
Confidence 68888876421 1111111110 0000 01123333333 3466778
Q ss_pred CCCcEEEEECCCCceee----eeccc------ccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC-CCCeeEEeec
Q 002234 808 QDGAIQEIDLATGTFAT----IQTGH------RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST-SNYNMVGSLP 876 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~----~~~~~------~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~-~~~~~~~~~~ 876 (949)
..|+|++-|++....-- .+..+ .-+.+--..|..+.|+++|+|+++-.. -+|++||+ ...+++.+++
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEEe
Confidence 88999999998543210 01000 011222357889999999999998743 49999999 4566666665
Q ss_pred -CC------------C---cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEE-EEe------------------c-ccc
Q 002234 877 -TL------------S---EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI-ETL------------------Q-TGT 918 (949)
Q Consensus 877 -~~------------~---~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~-~~l------------------~-~~h 918 (949)
|. . .-..++|+++ .+++|+..+..++|+...|... .++ . .|.
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~ 391 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGK 391 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCC
Confidence 21 1 2345788888 8999999999999995543211 000 0 010
Q ss_pred -------------ccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 919 -------------SGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 919 -------------~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
...|...+|+|..+.+|.+..++ +.||
T Consensus 392 r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 392 RKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 01356678999998888877553 5554
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=4.8e-08 Score=113.16 Aligned_cols=211 Identities=12% Similarity=0.040 Sum_probs=133.6
Q ss_pred cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEEEeecCCCceeeeeeccce
Q 002234 689 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 765 (949)
Q Consensus 689 ~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~ 765 (949)
.|.++|.+++ ..+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...+... .+....
T Consensus 180 ~l~~~d~~g~---~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~g~~~~------- 247 (430)
T PRK00178 180 TLQRSDYDGA---RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--EGLNGA------- 247 (430)
T ss_pred EEEEECCCCC---CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--CCCcCC-------
Confidence 4777888766 234455677889999999999999877654 3689999998864433222 222222
Q ss_pred EEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC--CcEEEEECCCCceeeeecccccccCCCCCEEEEE
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 843 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 843 (949)
..|+|||+.++.. .+.+ ..|.+||+.++.... +..+........
T Consensus 248 ~~~SpDG~~la~~---------------------------~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~ 293 (430)
T PRK00178 248 PAWSPDGSKLAFV---------------------------LSKDGNPEIYVMDLASRQLSR-------VTNHPAIDTEPF 293 (430)
T ss_pred eEECCCCCEEEEE---------------------------EccCCCceEEEEECCCCCeEE-------cccCCCCcCCeE
Confidence 3499999876432 2223 358888998876532 223334456678
Q ss_pred EeCCceEEEEEECCC--CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEEC-CC--eEEEEECCCCcEEEEecc
Q 002234 844 VHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-GG--TVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 844 ~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~-dg--~I~vwd~~~~~~~~~l~~ 916 (949)
|+||+..++..+..+ ..|.++|+.+++...............|+|| .++..+. ++ .|.+||+.+++. ..+..
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~ 372 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD 372 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC
Confidence 999988776655432 3677888877765433222333445688988 5555443 33 588999988864 33322
Q ss_pred ccccceeEEEEeCCCCEEEEEeCC-C--cEEEEeC
Q 002234 917 GTSGKVQCMALDDNEEFLVIGTSD-G--RIQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg~~L~sgs~D-g--~I~iWdl 948 (949)
. .......|+|||+.++..+.+ | .|.++++
T Consensus 373 ~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 373 T--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred C--CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2 223356899999988776643 3 3555543
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=1.3e-08 Score=103.04 Aligned_cols=249 Identities=15% Similarity=0.153 Sum_probs=161.4
Q ss_pred CCcEEEEecCCCceeeeEEec-ccCCCEEEEEEec---CCC-EEEEEeCCCcEEEEECCCCeeE-EEEeec-CCCcee-e
Q 002234 687 DGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQ---SGE-MLYSGSLDKTARVWSIGNEEIH-CVQVHD-IKDQIQ-N 758 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fsp---dg~-~L~Sgs~Dg~I~vWd~~~~~~~-~~~~~~-~~~~v~-~ 758 (949)
-|.+.+|++...+..++.+++ ..+..+..+.|.. +|. .++-+-.+|.|.++........ .+.... .+-.+. +
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 366778887766333322332 2345567777764 455 5566667888988876553211 111111 011111 1
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEec--------------CCCCceEEEEe---CCEEEEEECCCcEEEEECCCCc
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLN--------------SSKYPKCLALV---QGKVYCGCQDGAIQEIDLATGT 821 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~--------------~~~~v~~v~~~---~~~l~sgs~Dg~I~iwd~~~~~ 821 (949)
+ ..-|++.|..+++...+|.+...+ |.-..+...|+ |+.+++|+.|+.+..||++...
T Consensus 125 l-----slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 L-----SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred e-----EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 1 233888888888888888776333 22344555555 4679999999999999999433
Q ss_pred -eeeeecccccccCCCCCEEEEEEe-CCceEEEEEECCCCEEEEEECC-CCeeEEeecCCCcEEEEEEcCC---EEEEEE
Q 002234 822 -FATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTS-NYNMVGSLPTLSEVRAMVVSSE---LVYLGC 895 (949)
Q Consensus 822 -~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~Dg~~I~iwd~~-~~~~~~~~~~~~~v~~l~~s~d---~l~sgs 895 (949)
.+. ....-|...|.+|.-+ |...++++|+.|+ .|++||.+ -++++..-+..+.|+.+..+|. .++.++
T Consensus 200 ~~i~-----~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 200 TFIW-----HNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred ceee-----ecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH
Confidence 332 2345688899999987 5788999999997 99999999 4777777777899999999997 344555
Q ss_pred CCCeEEEEECCCCc----EEEEeccccccceeEEEEeCCCCEEEEEe-CCCcEE-EE
Q 002234 896 KGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQ-AW 946 (949)
Q Consensus 896 ~dg~I~vwd~~~~~----~~~~l~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~-iW 946 (949)
.-+-.+|-+.+.+. ........|.+-...-.|.....+|+|++ .|+.++ +|
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 55557777765543 23333356777777777755456788865 577755 77
No 251
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.06 E-value=9.4e-11 Score=84.70 Aligned_cols=38 Identities=32% Similarity=0.835 Sum_probs=33.5
Q ss_pred CcCccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 002234 21 CPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPIT 59 (949)
Q Consensus 21 Cpic~~~~~dP-v~~~cghtfc~~ci~~~~~~~~~~CP~c 59 (949)
||||.+.+.+| ++++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6799987
No 252
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.06 E-value=7e-11 Score=120.18 Aligned_cols=72 Identities=18% Similarity=0.353 Sum_probs=65.2
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCC
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
.+..-++|-||.++|+-||++|||||||..||..++.. +..||.|..++....+ +.|+.|..+|+.+.-.++
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~L-r~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDL-RNNRILDEIVKSLNFARN 90 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhh-hhhhHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999987 4599999999999888 799999999999976544
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=4.8e-08 Score=112.92 Aligned_cols=230 Identities=12% Similarity=0.021 Sum_probs=139.1
Q ss_pred CeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEe-CCC--cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCE
Q 002234 651 SADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGH-SDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 724 (949)
Q Consensus 651 ~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs-~Dg--~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~ 724 (949)
.+.++|.+. ..+.+..+...+.+..|+|| .|+..+ .++ .|.+||+.+++...+..+.+ ......|+|||+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCE
Confidence 566667763 23455667788999999997 555543 333 58888998885434443433 3446899999997
Q ss_pred EEE-EeCCCc--EEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 725 LYS-GSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 725 L~S-gs~Dg~--I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
|+. .+.+|. |.+||+.+++...+.. +...... ..|+|||+.++...
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~--~~~~~~~-------p~wSpDG~~I~f~s---------------------- 324 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITR--HRAIDTE-------PSWHPDGKSLIFTS---------------------- 324 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECcc--CCCCccc-------eEECCCCCEEEEEE----------------------
Confidence 764 566665 7778888875433322 1222222 34899998754332
Q ss_pred EEEEEECC--CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCC--EEEEEECCCCeeEEeecC
Q 002234 802 KVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPT 877 (949)
Q Consensus 802 ~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~~ 877 (949)
..+ ..|.++|+.+++..... +.+ .......|+||+.+++..+.+++ .|.++|+.++.... +..
T Consensus 325 -----~~~g~~~Iy~~dl~~g~~~~Lt-----~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~ 391 (448)
T PRK04792 325 -----ERGGKPQIYRVNLASGKVSRLT-----FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS 391 (448)
T ss_pred -----CCCCCceEEEEECCCCCEEEEe-----cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC
Confidence 222 34666788777654221 111 22335689999988877665443 45567887776432 332
Q ss_pred CCcEEEEEEcCC--EEE-EEECCC--eEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 878 LSEVRAMVVSSE--LVY-LGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 878 ~~~v~~l~~s~d--~l~-sgs~dg--~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
........|+|| .++ +...+| .+++++. +|.....+. .+.+.+...+|+|
T Consensus 392 ~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 392 TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc-CCCCCcCCCccCC
Confidence 222234578988 344 444444 4777787 455566663 4556778888987
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=6.7e-08 Score=111.73 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=130.7
Q ss_pred cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCeeEEEEeecCCCceeeeeeccce
Q 002234 689 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-K--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 765 (949)
Q Consensus 689 ~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-g--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~ 765 (949)
.+.++|..+.. .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...+... .+....
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~------- 266 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGA------- 266 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCC-------
Confidence 56777877652 23455667789999999999998877643 3 588899988764433322 222222
Q ss_pred EEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCEEEEE
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 843 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 843 (949)
..|+|||+.++. +.+.+| .|.+||+.+++.. .+..+........
T Consensus 267 ~~wSPDG~~La~---------------------------~~~~~g~~~Iy~~dl~tg~~~-------~lt~~~~~~~~p~ 312 (448)
T PRK04792 267 PRFSPDGKKLAL---------------------------VLSKDGQPEIYVVDIATKALT-------RITRHRAIDTEPS 312 (448)
T ss_pred eeECCCCCEEEE---------------------------EEeCCCCeEEEEEECCCCCeE-------ECccCCCCccceE
Confidence 349999987543 334444 4777888877653 2233344566789
Q ss_pred EeCCceEEEEEECCC--CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEE-CCC--eEEEEECCCCcEEEEecc
Q 002234 844 VHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGG--TVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 844 ~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs-~dg--~I~vwd~~~~~~~~~l~~ 916 (949)
|+||+.+++..+..+ ..|.++|+.+++...............|+|| +++..+ .++ .|.++|+.+++.. .+..
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~ 391 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS 391 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC
Confidence 999998877665432 3577778877765432222233345689998 454443 344 5666788887643 3322
Q ss_pred ccccceeEEEEeCCCCEEEEEeC-CCc--EEEEeC
Q 002234 917 GTSGKVQCMALDDNEEFLVIGTS-DGR--IQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg~~L~sgs~-Dg~--I~iWdl 948 (949)
.. ......|+|||++|+..+. +|. +.+++.
T Consensus 392 ~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 392 TR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CC--CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 21 2234579999998876654 343 555554
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=132.20 Aligned_cols=238 Identities=11% Similarity=0.108 Sum_probs=164.5
Q ss_pred CCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec-ccCCCEEEEEEecCCCEEE
Q 002234 650 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLY 726 (949)
Q Consensus 650 g~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fspdg~~L~ 726 (949)
+...-|..+..-.....|-..|.++.-+|. +.+||+.||.|++|....+ +.+..+. .....|+.+.|+.+|+.+.
T Consensus 2190 ~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2190 WLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCcee
Confidence 333334443333344445567788887774 9999999999999999888 4444442 2338899999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE
Q 002234 727 SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 806 (949)
Q Consensus 727 Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg 806 (949)
.+..||.+.+|.+... .......|+....++. |.. ..++++
T Consensus 2268 i~d~dg~l~l~q~~pk--~~~s~qchnk~~~Df~-------Fi~------------------------------s~~~ta 2308 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPK--PYTSWQCHNKALSDFR-------FIG------------------------------SLLATA 2308 (2439)
T ss_pred eeccCCceeecccCCc--ceeccccCCcccccee-------eee------------------------------hhhhcc
Confidence 9999999999998842 2222233333333333 222 113332
Q ss_pred ---ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEE
Q 002234 807 ---CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRA 883 (949)
Q Consensus 807 ---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~ 883 (949)
+.++.+.+||.--..... ..-..|.+.++++++-|....+++||.+| .|++||++..+.+++++.
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s-----~v~~~H~~gaT~l~~~P~~qllisggr~G-~v~l~D~rqrql~h~~~~------ 2376 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNS-----LVHTCHDGGATVLAYAPKHQLLISGGRKG-EVCLFDIRQRQLRHTFQA------ 2376 (2439)
T ss_pred ccCCCCCcccchhcccCcccc-----eeeeecCCCceEEEEcCcceEEEecCCcC-cEEEeehHHHHHHHHhhh------
Confidence 457889999965433221 11267899999999999999999999998 999999998887777664
Q ss_pred EEEcCCEEEEEECCCeEEEEECCCCcEEEEecccccc--c--e--eEEEEeCCCCEEEEEeCCCc
Q 002234 884 MVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG--K--V--QCMALDDNEEFLVIGTSDGR 942 (949)
Q Consensus 884 l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~--~--I--~~l~~spdg~~L~sgs~Dg~ 942 (949)
+. ..+++++|+..|.++||++.....++++...|.. . . ..+-. -.++.|++++.||+
T Consensus 2377 ~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v-~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV-GQCNRIFSCGADGT 2439 (2439)
T ss_pred hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee-ccCceEEEecCCCC
Confidence 22 3448999999999999999998888887654421 0 1 11111 22456778888874
No 256
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4e-09 Score=109.41 Aligned_cols=262 Identities=15% Similarity=0.139 Sum_probs=185.0
Q ss_pred hccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhh-C---hhhHHHHHHhcCCChHHHHHhhhh---H
Q 002234 177 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK-G---LLEAVVLIDLLRPSTRTLIEMDMM---E 249 (949)
Q Consensus 177 l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~-g---~~~Aa~~l~~L~~~~~~~~~~~~~---~ 249 (949)
+..+.+++++.++-..|.+|... -+++--|++ =+.+++|+.-... | .-.|..-|.+|.-.++|+..+++. .
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~-l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVN-MENKGLIVS-LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHhCcchhhhhhhhhhhccceec-cCCceEEEe-ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchh
Confidence 45578899999999999999553 334444553 3345555543333 3 457777888887767777666655 7
Q ss_pred HHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhh
Q 002234 250 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 329 (949)
Q Consensus 250 ~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~ 329 (949)
||..+ .+.+++.+.. +.++.|+ .....-|||..+|..|++|.||+.+++|+.+.+.-+...+. ++.
T Consensus 171 pltrL-akskdirvqr---------natgaLl---nmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttais-nIa 236 (550)
T KOG4224|consen 171 PLTRL-AKSKDIRVQR---------NATGALL---NMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAIS-NIA 236 (550)
T ss_pred hhHhh-cccchhhHHH---------HHHHHHH---HhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhh-hhh
Confidence 77774 3333332221 1222221 12455699999999999999999999999999999888765 457
Q ss_pred ccCCchhhHhhhc--CchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCc
Q 002234 330 EDGKCRNSIADKA--ELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD 407 (949)
Q Consensus 330 ~~~~~r~~~~~~~--~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~ 407 (949)
.+...|+.++|.+ -++.||.|..+++++.|+.|-.+|-+|... .+-..+|.+.|+++. ++.+||+.-.
T Consensus 237 Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd------t~Yq~eiv~ag~lP~---lv~Llqs~~~- 306 (550)
T KOG4224|consen 237 VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD------TEYQREIVEAGSLPL---LVELLQSPMG- 306 (550)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc------chhhhHHHhcCCchH---HHHHHhCcch-
Confidence 7888899999999 679999999999999999999899888665 455677999999965 7777743211
Q ss_pred cchhHHHH-HH-hhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCccc
Q 002234 408 QCPVVAGL-LL-QLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRF 466 (949)
Q Consensus 408 ~~~~~a~~-l~-~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~ 466 (949)
...+|.. -. ++++ -.....-|..++-..+|+..|+.+|..+.|-+|..+|-||+|.+
T Consensus 307 -plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 307 -PLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred -hHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 1111211 11 1211 22334445555668899999999999888999999999999954
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=5.4e-09 Score=122.04 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=144.7
Q ss_pred HhhHhhhccccccccccEEEEecCCCCeEEEecCCc-eeeecCCCCceE--E---EEEeCC--EEEEEeCCCcEEEEecC
Q 002234 625 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHREL-VHVDSSENGKVL--S---IACFRD--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~-~~~~~~h~~~V~--~---l~~s~d--~lasgs~Dg~I~vWd~~ 696 (949)
+.+...+--..+..+..+++....+..+-+||.... +.....+....+ + +-++++ ++++|+.-|.|.+|+..
T Consensus 84 ~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 84 ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 333343444667778888999999999999998842 222223333221 1 223445 99999999999999988
Q ss_pred CCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 697 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
... .+. .+.+|.+.|.++.|+.||.+++|.|.|.++|+|++++++...
T Consensus 164 ~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------------ 211 (967)
T KOG0974|consen 164 EDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------------------------------ 211 (967)
T ss_pred ccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------------------------------
Confidence 432 333 678999999999999999999999999999999999974211
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC-CCEEEEEEeCCceEEEEEE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s 855 (949)
...|.|...+..+.+.++++++++.|-+.++|+... .... .+.+|. ..+..++.+++....++++
T Consensus 212 -------~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~~l~------~y~~h~g~~iw~~~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 212 -------CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-TQLE------VYDEHSGKGIWKIAVPIGVIIKVTGG 277 (967)
T ss_pred -------cccccccceeEEEEeccceeEEeccceEEEEEeccc-ceeh------hhhhhhhcceeEEEEcCCceEEEeec
Confidence 112445566666777777899999999999997553 3332 344443 5689999999999999999
Q ss_pred CCCCEEEEEECC
Q 002234 856 LDGAAVKMWSTS 867 (949)
Q Consensus 856 ~Dg~~I~iwd~~ 867 (949)
.|+ .+++||+.
T Consensus 278 ~Ds-~lk~~~l~ 288 (967)
T KOG0974|consen 278 NDS-TLKLWDLN 288 (967)
T ss_pred cCc-chhhhhhh
Confidence 987 99999874
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.01 E-value=2.4e-08 Score=101.37 Aligned_cols=157 Identities=11% Similarity=0.182 Sum_probs=105.0
Q ss_pred EEEEEecCCCEEEEEeC---C-------CcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 714 TGLAILQSGEMLYSGSL---D-------KTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~---D-------g~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
..+.|+|+|++|+.-.. | |...+|.++... ..........++|.+++ |+|+|+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~-------WsP~g~~fa------ 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVA-------WSPNGNEFA------ 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEE-------ECcCCCEEE------
Confidence 35778888887664333 1 234444443221 11111122234577766 888887643
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AA 860 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~ 860 (949)
++.|..++.|.+||++ ++.+.. + +...++.+.|+|+|.+++.++.++ +.
T Consensus 76 --------------------vi~g~~~~~v~lyd~~-~~~i~~------~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 76 --------------------VIYGSMPAKVTLYDVK-GKKIFS------F--GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred --------------------EEEccCCcccEEEcCc-ccEeEe------e--cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 3345567899999997 443322 2 235788999999999999987543 37
Q ss_pred EEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEE------CCCeEEEEECCCCcEEEEe
Q 002234 861 VKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC------KGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs------~dg~I~vwd~~~~~~~~~l 914 (949)
|.+||+++.+.+.+..+.. ++.++|+|| ++++++ .|+.++||+. +|+.+...
T Consensus 127 l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 9999999999988887654 789999999 666665 3788999998 46666554
No 259
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.01 E-value=1e-08 Score=111.33 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=125.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEec--ccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCce
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIR--EHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI 756 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~--~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v 756 (949)
-+..|-.-|.|.+.|....+...+.... -.+..|+|+.|-|. ...++.+-.+|.+.++|..-.. ..
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----------~~ 255 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----------GA 255 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----------cC
Confidence 6777888888988887653211111111 13478999999994 4566667779999999863210 00
Q ss_pred eeeeeccceEEEEeCCCEEEEEEecCeE-----EEec-CCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecc
Q 002234 757 QNLAVSNSILCFIPQGAGIKVHLRNGKT-----KLLN-SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTG 828 (949)
Q Consensus 757 ~~l~~~~~~~~fsp~g~~l~~~~~~g~i-----~~~~-~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 828 (949)
.. ......+++..+.+..+.+.. .-|. ....|..++|++ .+|++.+.||.++|||..+.+..
T Consensus 256 t~-----p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl----- 325 (636)
T KOG2394|consen 256 TA-----PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL----- 325 (636)
T ss_pred CC-----CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH-----
Confidence 00 001123344444443333221 1222 233566666664 35999999999999999987766
Q ss_pred cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEc
Q 002234 829 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVS 887 (949)
Q Consensus 829 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 887 (949)
..+...-+...|++|+||++|+++++.|+ -|.||.+...+.+..=. |.++|..++|.
T Consensus 326 -g~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 326 -GVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -HHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccceEEEeccccccceeeEeec
Confidence 33444557899999999999999999998 99999999998887766 88999999988
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.01 E-value=1.7e-07 Score=108.21 Aligned_cols=231 Identities=13% Similarity=0.021 Sum_probs=140.6
Q ss_pred CCeEEEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCC---CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC
Q 002234 650 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 650 g~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
..|.++|.. ...+.+..+...+...+|+|| +|+.++.+ ..|++||+.++... .+..+.+.+.++.|+|||+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCC
Confidence 357777775 334556667778999999997 66665543 47999999988322 2334556677799999998
Q ss_pred EEE-EEeCCC--cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 724 MLY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 724 ~L~-Sgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
.|+ +.+.++ .|.+||+.++....+.. +....... .|+|||+.++.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~-------~~s~dg~~l~~~s~~~------------------ 299 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTN--GPGIDTEP-------SWSPDGKSIAFTSDRG------------------ 299 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCC--CCCCCCCE-------EECCCCCEEEEEECCC------------------
Confidence 776 444444 58889998875333322 22222222 3888888754322110
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCCeeEEeecCC
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTL 878 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~~~ 878 (949)
....|.+||+.+++... +..+...+....|+|++.+++..+.++ ..|.+||+.++... .+...
T Consensus 300 -------g~~~iy~~d~~~~~~~~-------l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 364 (417)
T TIGR02800 300 -------GSPQIYMMDADGGEVRR-------LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT 364 (417)
T ss_pred -------CCceEEEEECCCCCEEE-------eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC
Confidence 11257777887766432 222334567788999999888877653 27888998875443 33322
Q ss_pred CcEEEEEEcCC--EEEEEECCC---eEEEEECCCCcEEEEeccccccceeEEEE
Q 002234 879 SEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 879 ~~v~~l~~s~d--~l~sgs~dg---~I~vwd~~~~~~~~~l~~~h~~~I~~l~~ 927 (949)
.......|+|| .++..+.++ .+++.+.. +.....+. .+.+.+...+|
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~~g~~~~~~w 416 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP-LGNGDVREPAW 416 (417)
T ss_pred CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC-CCCCCcCCCCC
Confidence 33445678888 555555443 45555643 44445553 33445555555
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=9.9e-09 Score=113.32 Aligned_cols=206 Identities=12% Similarity=0.148 Sum_probs=144.5
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEEEee--cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEE
Q 002234 720 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVH--DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 797 (949)
Q Consensus 720 pdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~ 797 (949)
|.+.++|....||.+|+||+..++.+.-... ...+...+.. |. +.. +....-|.........+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~-------w~-----L~~---~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTK-------WG-----LSA---DYSPMKWLSLEKAKKAS 67 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEE-------EE-----EEe---ccchHHHHhHHHHhhcc
Confidence 4567999999999999999999863322211 1111111111 11 000 00000010011111112
Q ss_pred EeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-
Q 002234 798 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP- 876 (949)
Q Consensus 798 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~- 876 (949)
.....++-|...|.|.+|+...|+....+. -..|.++|+++.++.+-..+-+++.|. .+..|+....+.+..+.
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~s----t~~h~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLS----TDKHYGNVNEILDAQRLGCIYSVGADL-KVVYILEKEKVIIRIWKE 142 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEe----cCCCCCcceeeecccccCceEecCCce-eEEEEecccceeeeeecc
Confidence 222358889999999999999999875433 246899999999999888888888886 99999999999999888
Q ss_pred CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC-----CCEEEEE-eCCCcEEEEeC
Q 002234 877 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN-----EEFLVIG-TSDGRIQAWGL 948 (949)
Q Consensus 877 ~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd-----g~~L~sg-s~Dg~I~iWdl 948 (949)
....+.+++++|| .+++| .+.|++||+++++.+.+| .||.++|+++.|..+ |.++.++ ..+..|.+|-+
T Consensus 143 ~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 5778999999999 45555 478999999999999999 699999999999877 6666554 44555667743
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=2.1e-07 Score=107.81 Aligned_cols=233 Identities=12% Similarity=-0.013 Sum_probs=140.9
Q ss_pred CeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCC---CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCE
Q 002234 651 SADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 724 (949)
Q Consensus 651 ~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~ 724 (949)
.|.++|.+. ..+....+...+....|+|| .|+..+.+ ..|.+||+.++..+.+.. ..+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCE
Confidence 366777763 34455567788999999997 66555433 368999999884333333 3344557899999998
Q ss_pred EE-EEeCCC--cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 725 LY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 725 L~-Sgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
|+ +.+.+| .|.+||+.+++...+.. +...... ..|+|||+.++.....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~-------~~~spDg~~i~f~s~~-------------------- 307 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTN--HPAIDTE-------PFWGKDGRTLYFTSDR-------------------- 307 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEccc--CCCCcCC-------eEECCCCCEEEEEECC--------------------
Confidence 87 455555 58888999876443322 2222222 2389999875433211
Q ss_pred EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCCeeEEeecCCC
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLS 879 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~~~~~~~~~ 879 (949)
..+..|.++|+.+++..... ..+ .......|+|++.+++..+.++ ..|.+||+.++... .+....
T Consensus 308 -----~g~~~iy~~d~~~g~~~~lt-----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~ 374 (430)
T PRK00178 308 -----GGKPQIYKVNVNGGRAERVT-----FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTS 374 (430)
T ss_pred -----CCCceEEEEECCCCCEEEee-----cCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCC
Confidence 01235777788777653221 111 2233567899999888776543 25888999887643 333222
Q ss_pred cEEEEEEcCC--EEEEEE-CC--CeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 880 EVRAMVVSSE--LVYLGC-KG--GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs-~d--g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
......|+|| .++..+ .+ ..+++++... .....+. .+.+.+...+|+|-
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc-CCCCCcCCCccCCC
Confidence 2335689988 444433 33 3577778754 3344453 44556778888863
No 263
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.00 E-value=2e-09 Score=109.86 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=149.6
Q ss_pred EEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEEEee
Q 002234 674 IACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS-GSLDKTARVWSIGNEEIHCVQVH 750 (949)
Q Consensus 674 l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~S-gs~Dg~I~vWd~~~~~~~~~~~~ 750 (949)
.+|||+ ++|+.+.- .+.|-|.++- +..+.+. --+.|.-+.|.-|..+++. .+.|+.|.+|++...+..+.. .
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-d 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-D 88 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-c
Confidence 567875 88888765 7888888886 3333332 2456777889888776655 466889999999998744433 3
Q ss_pred cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 751 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 751 ~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
+....+..+. |+|||+.+ +.+..-|-.|.+|.+.+.+.....-
T Consensus 89 eg~agls~~~-------WSPdgrhi---------------------------L~tseF~lriTVWSL~t~~~~~~~~--- 131 (447)
T KOG4497|consen 89 EGQAGLSSIS-------WSPDGRHI---------------------------LLTSEFDLRITVWSLNTQKGYLLPH--- 131 (447)
T ss_pred cCCCcceeee-------ECCCcceE---------------------------eeeecceeEEEEEEeccceeEEecc---
Confidence 3345555555 99999875 6667778899999999887653211
Q ss_pred cccCCCCCEEEEEEeCCceEEEEEECCCC--EEEEEECCCCeeEEeec-CCCcEEEEEEcCCEEEEEECCCeEEEEECCC
Q 002234 831 KLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~ 907 (949)
....+..++|++|+++.+..+.-+. .+.|..-.....++.+. ..-..+.+.|+|| ++.+-|||.--
T Consensus 132 ----pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~L 200 (447)
T KOG4497|consen 132 ----PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVL 200 (447)
T ss_pred ----cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecchh
Confidence 1245688999999999998875540 12222222344455555 3456788999998 34556777544
Q ss_pred CcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 908 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 908 ~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
...+..+. -.-.+..+.|+|.+++|+.|+.|+.++|-
T Consensus 201 eykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 201 EYKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred hheeeeee--eccceeEEEeccccceEEeeccchhhhhh
Confidence 44444442 22368899999999999999999999874
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=2.3e-09 Score=130.05 Aligned_cols=210 Identities=21% Similarity=0.290 Sum_probs=154.1
Q ss_pred EEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEEEeecCCCceeee
Q 002234 681 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNL 759 (949)
Q Consensus 681 lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~v~~l 759 (949)
+.....+++..-|..+.+. ..++.|-..|.++.=+|...+-+||+.||.|++|....+.. .+..... ...|..+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~s~vtr~ 2257 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-NSRVTRS 2257 (2439)
T ss_pred CCcccCCccccceecccce----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-cchhhhh
Confidence 3334445556666655441 22344667788898899888999999999999999988752 2222222 2445444
Q ss_pred eeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCE
Q 002234 760 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 839 (949)
Q Consensus 760 ~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 839 (949)
. |+.+|. ++..+..||.+.+|.+. .+.. .....|....
T Consensus 2258 ~-------f~~qGn----------------------------k~~i~d~dg~l~l~q~~-pk~~------~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2258 R-------FNHQGN----------------------------KFGIVDGDGDLSLWQAS-PKPY------TSWQCHNKAL 2295 (2439)
T ss_pred h-------hcccCC----------------------------ceeeeccCCceeecccC-Ccce------eccccCCccc
Confidence 4 665554 46677788889999877 2222 3456788888
Q ss_pred EEEEEeCCceEEEEEECCCCEEEEEECCCC---eeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 840 HALQVHNGLVYTASTSLDGAAVKMWSTSNY---NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~---~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
+.+.|-......+.-+.||+.+.+||.--. .++. ..|...++++++-|. .+++|+.+|.|++||++..+.++++
T Consensus 2296 ~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2296 SDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred cceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 889887766666777788899999997532 2333 348899999999998 8999999999999999998888777
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 915 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+. +. ...++++|+..|.|+||+++
T Consensus 2375 ~~----------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2375 QA----------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred hh----------hh-hhheeeccCcccceEEEEcc
Confidence 52 44 56799999999999999974
No 265
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.97 E-value=1.4e-10 Score=89.39 Aligned_cols=60 Identities=22% Similarity=0.425 Sum_probs=35.2
Q ss_pred CCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHH
Q 002234 16 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 79 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i 79 (949)
.+-++|++|.++|++||.+ .|.|.||+.||...+.. .||+|+.+....++ +-|+.|.+||
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~-~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDI-QINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS-----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHH-HhhhhhhccC
Confidence 3467899999999999975 99999999999876543 59999999999998 6999999986
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=5.8e-06 Score=90.52 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=157.0
Q ss_pred CCeEEEecCCc--eeeecCCCCceEEEEEeCC---EEEEEe---------CCCcEEEEecCCCceeeeEEeccc------
Q 002234 650 SSADFWNHREL--VHVDSSENGKVLSIACFRD---KIFSGH---------SDGTIKVWTGRGSILHLIQQIREH------ 709 (949)
Q Consensus 650 g~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d---~lasgs---------~Dg~I~vWd~~t~~~~~i~~l~~H------ 709 (949)
++|.|.|..+. +........+- .+ +||| ..++.+ .+..|.+||..+. +.+.++.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhh
Confidence 89999998742 22222212221 24 8886 444444 5889999999999 677776532
Q ss_pred -CCCEEEEEEecCCCEEEEEe-C-CCcEEEEECCCCeeEEEEeecCCCceeeeee-ccceEEEEeCCCEEEEEEec-CeE
Q 002234 710 -TKAVTGLAILQSGEMLYSGS-L-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAV-SNSILCFIPQGAGIKVHLRN-GKT 784 (949)
Q Consensus 710 -~~~V~~v~fspdg~~L~Sgs-~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~fsp~g~~l~~~~~~-g~i 784 (949)
...-..++++|||++|+... . +..|.+.|+.+++.. ......+...-... .......+.||+.+.+...+ |+.
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--RMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--EEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 22344789999999998766 3 789999999998622 22221221111111 11233456777766644432 222
Q ss_pred -----EEecC------CCCceEEEEeCCEEEEEECCCcEEEEECCCCceee-----eeccccc-ccCCCCCEEEEEEeCC
Q 002234 785 -----KLLNS------SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT-----IQTGHRK-LLGKANPVHALQVHNG 847 (949)
Q Consensus 785 -----~~~~~------~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~-----~~~~~~~-~~~h~~~V~~l~~~~~ 847 (949)
.+++. ... .....++..+-.+..|+|.+.|+....... ....... -.-....+.-++++++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred EEeeeeeecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 23322 111 111113444434444999999965543221 1110000 0001233445999988
Q ss_pred ceEEEEEEC---------CCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEE-CCCeEEEEECCCCcEEEEe
Q 002234 848 LVYTASTSL---------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 848 ~~~l~s~s~---------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs-~dg~I~vwd~~~~~~~~~l 914 (949)
+..+..... .++.|.++|..+++.+..+.....+..++++|| .+++.+ .++.|.++|..+++.+.++
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 776665321 124899999999999999998889999999998 455555 5789999999999999988
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.93 E-value=2.1e-06 Score=94.00 Aligned_cols=248 Identities=9% Similarity=0.118 Sum_probs=150.7
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC----------CCcEEEEECCCCeeEEEEeecCCCcee
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----------DKTARVWSIGNEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~----------Dg~I~vWd~~~~~~~~~~~~~~~~~v~ 757 (949)
|+|.|.|..++ +.+.++..-..+-. + ++|||+.++.+.. +..|.+||..+.+........ ..+-.
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-EGPRF 101 (352)
T ss_pred ceEEEEECCCC--EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-CCchh
Confidence 89999999998 67777754333322 4 9999998877655 789999999998522222111 11111
Q ss_pred eeeeccceEEEEeCCCEEEEEEec--CeEEEecCCC--CceEEEEeC---------CEEEEEECCCcEEEEECCCCceee
Q 002234 758 NLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSSK--YPKCLALVQ---------GKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 758 ~l~~~~~~~~fsp~g~~l~~~~~~--g~i~~~~~~~--~v~~v~~~~---------~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
.+...+....++|||+.+.+...+ +.+.++|... .+..+...+ .....-+.||......+.+.....
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 112233355699999999987744 6777777533 233333332 223333566665554443322211
Q ss_pred eecccccccC-----CCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCC-----CeeEEeec--------CCCcEEEEE
Q 002234 825 IQTGHRKLLG-----KANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSN-----YNMVGSLP--------TLSEVRAMV 885 (949)
Q Consensus 825 ~~~~~~~~~~-----h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~-----~~~~~~~~--------~~~~v~~l~ 885 (949)
... ...+.+ ...+ .|.+ ++.++..... | +|.+-|+.. ......+. ......-++
T Consensus 182 ~~~-~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G-~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 182 IKP-TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-G-KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred Eee-eeeecCCccccccCC----ceEcCCCcEEEEecC-C-eEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 110 001111 0122 3344 6665555443 5 999999543 33333322 123344599
Q ss_pred EcCC--EEEEEE----------CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCC
Q 002234 886 VSSE--LVYLGC----------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 886 ~s~d--~l~sgs----------~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iWdl~ 949 (949)
++++ .+++.. ..+.|.++|..+++.+..+..++ .+..++++||++ +|++.+ .++.|.+.|..
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 9987 555532 22589999999999999997555 799999999999 888666 67889999863
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.8e-07 Score=103.54 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=131.9
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeEEecc--c-CCCEEEEEE--------------------ecCCCEEEEEeCCCcEE
Q 002234 679 DKIFSGHSDGTIKVWTGRGSILHLIQQIRE--H-TKAVTGLAI--------------------LQSGEMLYSGSLDKTAR 735 (949)
Q Consensus 679 d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~--H-~~~V~~v~f--------------------spdg~~L~Sgs~Dg~I~ 735 (949)
+++|....||.+++||..++ +..+.|.. | ++..++..| +.|...++-|...|.|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred heEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 38888999999999999888 45444432 2 334444444 22344777788889999
Q ss_pred EEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 736 VWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 736 vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
+|++..|+...... ..|.++|.++. ++.+ -+.|++++.|+.+.+
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~-------~~~~----------------------------~~ciyS~~ad~~v~~ 128 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEIL-------DAQR----------------------------LGCIYSVGADLKVVY 128 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeee-------cccc----------------------------cCceEecCCceeEEE
Confidence 99998887443333 44555555543 1111 135899999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC----
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---- 889 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---- 889 (949)
|+...+..+ +.+.+....+.+++++||+..+++++ ++|++||+.+.+.+.+|+ |.++|+++.|-.+
T Consensus 129 ~~~~~~~~~------~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 129 ILEKEKVII------RIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred Eecccceee------eeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 999999888 45556667899999999999999885 599999999999999999 6788999998543
Q ss_pred ---E-EEEEECCCeEEEEECCC
Q 002234 890 ---L-VYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 890 ---~-l~sgs~dg~I~vwd~~~ 907 (949)
+ +.+...+..+.+|-...
T Consensus 200 ~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceeeeccccccceeEEEEEc
Confidence 3 33344556677776544
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=7.8e-07 Score=102.12 Aligned_cols=235 Identities=9% Similarity=-0.044 Sum_probs=138.4
Q ss_pred CeEEEecCC-ceeeecCCCCceEEEEEeCC--E---EEEEeCCC--cEEEEecCCCceeeeEEecccCCCEEEEEEecCC
Q 002234 651 SADFWNHRE-LVHVDSSENGKVLSIACFRD--K---IFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 722 (949)
Q Consensus 651 ~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~---lasgs~Dg--~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg 722 (949)
.|.+.|.+. ..+.+..+...+..-.|||| . +++...+| .|.+.++.+++.+.+..+.+ ......|+|||
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCC
Confidence 455666652 23334445566778899997 3 23444444 47777888885445544443 44567999999
Q ss_pred CEEEEEeC-----CCcEEEEECCCC---eeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCce
Q 002234 723 EMLYSGSL-----DKTARVWSIGNE---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 794 (949)
Q Consensus 723 ~~L~Sgs~-----Dg~I~vWd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~ 794 (949)
+.|+..+. |..+..|++.++ ....+... ....... ..|+|||+.++...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~-------p~wSPDG~~Laf~s--------------- 299 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGN-------PSFSPDGTRLVFVS--------------- 299 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCC-------eEECCCCCEEEEEE---------------
Confidence 98886653 333445776653 21212111 1111122 34999998754332
Q ss_pred EEEEeCCEEEEEECCCcEEEE--ECCC-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCC
Q 002234 795 CLALVQGKVYCGCQDGAIQEI--DLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNY 869 (949)
Q Consensus 795 ~v~~~~~~l~sgs~Dg~I~iw--d~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~ 869 (949)
..+|...+| ++.. +... ..+..+...+....|+||+..++..+.++ ..|.+||+.++
T Consensus 300 ------------~~~g~~~ly~~~~~~~g~~~------~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 300 ------------NKDGRPRIYIMQIDPEGQSP------RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ------------CCCCCceEEEEECcccccce------EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 233433344 4432 1111 22223334567889999999888765432 37999999988
Q ss_pred eeEEeecCCCcEEEEEEcCC--EEE-EEEC--CCeEEEEECCCCcEEEEeccccccceeEEEEeCCC
Q 002234 870 NMVGSLPTLSEVRAMVVSSE--LVY-LGCK--GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 931 (949)
Q Consensus 870 ~~~~~~~~~~~v~~l~~s~d--~l~-sgs~--dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg 931 (949)
+..........+....|+|| .++ ++.. .+.|++||+.+++..... ...+.+...+|+|-.
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAFP 426 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCCC
Confidence 76544334456778899998 444 3332 357999999887754444 234457788888754
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.90 E-value=6.8e-07 Score=97.05 Aligned_cols=296 Identities=11% Similarity=0.149 Sum_probs=178.9
Q ss_pred ccccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCC---------------cEEEEe
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG---------------TIKVWT 694 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg---------------~I~vWd 694 (949)
.+..+++.|.+|++.... -|.+|+.........-....|..+.|||+ +|.+-+..+ .+.|||
T Consensus 36 ~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd 114 (561)
T COG5354 36 AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWD 114 (561)
T ss_pred hheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEe
Confidence 345566677788765544 47889887544444445667999999996 888766544 499999
Q ss_pred cCCCceeeeEEecccCCC--EE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCC-Cceeeeeeccc-----e
Q 002234 695 GRGSILHLIQQIREHTKA--VT-GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK-DQIQNLAVSNS-----I 765 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~--V~-~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~-~~v~~l~~~~~-----~ 765 (949)
..++ ..+..+.+-..+ .+ -+.|+-+.++.+=... ..++|+++ ++..........+ ..+....+++. .
T Consensus 115 ~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~l 190 (561)
T COG5354 115 IASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDEL 190 (561)
T ss_pred ccCc--eeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceE
Confidence 9999 788888776665 56 6889888777665533 45899997 4432222222112 34445553332 2
Q ss_pred EEEEeCCCEEEEEEecCeEEEecCCCC----------c--eEEEEeC--CEEEE-----------EECCCcEEEEECCCC
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNSSKY----------P--KCLALVQ--GKVYC-----------GCQDGAIQEIDLATG 820 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~~~~----------v--~~v~~~~--~~l~s-----------gs~Dg~I~iwd~~~~ 820 (949)
+.|.|.-. ...+.+++|..... + ..+.+.. +.+.+ -.....++++++...
T Consensus 191 a~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 191 AYWTPEKL-----NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred EEEccccC-----CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 22333211 11233444432210 0 1122221 12111 011245677777643
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEE-CCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG 897 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d 897 (949)
.+. ...+-.++|..++|.|.+.-++..+ .....+.++|++.. ....++ ...=+.+.|+|. +++.++.|
T Consensus 266 ~i~-------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 266 SIP-------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ccc-------eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-CcccccccccCcccEEEEecCC
Confidence 332 1124468999999988776665554 44458999999866 333333 344456778887 66666544
Q ss_pred ---CeEEEEECCCCcEEE-EeccccccceeEEEEeCCCCEEEEEe------CCCcEEEEeCC
Q 002234 898 ---GTVEIWDQKRQIRIE-TLQTGTSGKVQCMALDDNEEFLVIGT------SDGRIQAWGLS 949 (949)
Q Consensus 898 ---g~I~vwd~~~~~~~~-~l~~~h~~~I~~l~~spdg~~L~sgs------~Dg~I~iWdl~ 949 (949)
|.|-+||......+. .+. +. .-+-+.|+|||+++.+.. .|..|+|||+.
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~-~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFN-GL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccccceEEeccCCceEEEEEee-cC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 789999987765444 563 32 245668999999988775 38889999974
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.9e-08 Score=111.98 Aligned_cols=230 Identities=14% Similarity=0.156 Sum_probs=159.4
Q ss_pred CCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc-------------eeeeEEecccCCCEEEEEEecCCCEEEEEeC
Q 002234 666 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSL 730 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~-------------~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~ 730 (949)
..+....|+.|+.+ +++.|+.||.++|-.+.+.. ...-+++.||.+.|.-+.|+.+.+.|-|...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 45677899999985 99999999999999876531 1233578899999999999999999999999
Q ss_pred CCcEEEEECCCCee-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC
Q 002234 731 DKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 809 (949)
Q Consensus 731 Dg~I~vWd~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D 809 (949)
+|.|.||-+-.|.. ........++-|.++. |..||+.+.+. +.+|.+++|+-|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~Sms-------Wn~dG~kIcIv-------------------YeDGavIVGsvd 145 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMS-------WNLDGTKICIV-------------------YEDGAVIVGSVD 145 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEE-------EcCCCcEEEEE-------------------EccCCEEEEeec
Confidence 99999999887752 1122223345566666 88888776444 444568889998
Q ss_pred CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe-------eEEeec-----C
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-------MVGSLP-----T 877 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~-------~~~~~~-----~ 877 (949)
|. +||.-.-.. .....+.|++|...+.-+-.+| .+.++|....- +..... .
T Consensus 146 GN-RIwgKeLkg---------------~~l~hv~ws~D~~~~Lf~~ang-e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~ 208 (1189)
T KOG2041|consen 146 GN-RIWGKELKG---------------QLLAHVLWSEDLEQALFKKANG-ETHLYDNQGNFERKLEKDCEVNGTGIFSNF 208 (1189)
T ss_pred cc-eecchhcch---------------heccceeecccHHHHHhhhcCC-cEEEecccccHHHhhhhceEEeeeeeecCC
Confidence 87 777532111 1233567888777655554554 88888875321 111111 1
Q ss_pred CCcEEEEEEc--------CC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 878 LSEVRAMVVS--------SE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 878 ~~~v~~l~~s--------~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
+..+..+.|. || .++++-.+|.+.|-.-.+......+..+ -.|....|+++|.+|+.+|.|
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence 2235555553 35 6899999999998876655544445433 478999999999999999865
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=1.3e-06 Score=110.33 Aligned_cols=247 Identities=16% Similarity=0.157 Sum_probs=145.7
Q ss_pred EEEEEeC--C-EEEEEeCCCcEEEEecCCCceeeeEEecc--------------cCCCEEEEEEecCCCEEEEEe-CCCc
Q 002234 672 LSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--------------HTKAVTGLAILQSGEMLYSGS-LDKT 733 (949)
Q Consensus 672 ~~l~~s~--d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~--------------H~~~V~~v~fspdg~~L~Sgs-~Dg~ 733 (949)
..+++++ + .+++-+.++.|++||..+. .+..+.+ +-..-..++++++++.|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 4566764 2 6677778889999998754 3333322 112357899999888665554 4578
Q ss_pred EEEEECCCCeeEEEEeecCCCc--------eeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEE
Q 002234 734 ARVWSIGNEEIHCVQVHDIKDQ--------IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 805 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~~~~~~--------v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~s 805 (949)
|+++|..++....+......+. .......|..++|+|++..+ +++
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L---------------------------yVa 700 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV---------------------------YIA 700 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE---------------------------EEE
Confidence 9999998875443332110000 00000112223344422221 333
Q ss_pred EECCCcEEEEECCCCceeeeeccc---cccc------CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEee-
Q 002234 806 GCQDGAIQEIDLATGTFATIQTGH---RKLL------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL- 875 (949)
Q Consensus 806 gs~Dg~I~iwd~~~~~~~~~~~~~---~~~~------~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~- 875 (949)
.+.++.|++||..++..... .+. .... ..-.....++++|++..+..+..+++.|++||+.++......
T Consensus 701 d~~~~~I~v~d~~~g~v~~~-~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTRVF-SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ECCCCeEEEEECCCCeEEEE-ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 44556677777665543211 110 0000 112345679999988755544444569999999876532110
Q ss_pred ------------c-C--------CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccc------------ccc
Q 002234 876 ------------P-T--------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG------------TSG 920 (949)
Q Consensus 876 ------------~-~--------~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~------------h~~ 920 (949)
. . -.....++++++ .+++-+.++.|++||..++........+ .-.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 0 0 113467888887 5566677899999999887655433211 112
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 921 KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 921 ~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
....++++++|+.+++-+.+++|++||++
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 57889999999999999999999999974
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=6.5e-08 Score=99.75 Aligned_cols=273 Identities=11% Similarity=0.180 Sum_probs=165.8
Q ss_pred CCCceEEEEEeC--CEEEEEeCCCcEEEEecCC---CceeeeEEecccCC------------CEEEEEEecCC--CEEEE
Q 002234 667 ENGKVLSIACFR--DKIFSGHSDGTIKVWTGRG---SILHLIQQIREHTK------------AVTGLAILQSG--EMLYS 727 (949)
Q Consensus 667 h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t---~~~~~i~~l~~H~~------------~V~~v~fspdg--~~L~S 727 (949)
..+-|.+|.|.. ++|++|..+|.|-++.-.. ++.....+++.|.. .|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345688899886 4999999999999996442 23335556666653 48889999865 46777
Q ss_pred EeCCCcEEEEECCCCeeEEE----EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe--cCCCCceEEEEeCC
Q 002234 728 GSLDKTARVWSIGNEEIHCV----QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL--NSSKYPKCLALVQG 801 (949)
Q Consensus 728 gs~Dg~I~vWd~~~~~~~~~----~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~--~~~~~v~~v~~~~~ 801 (949)
.+.|++|++|.+.....+.- ........+.++.. ....|....+... -.+++ -|.-.|.++.++.+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~----p~~~~~~~~vea~----prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL----PVEGRHDLEVEAS----PRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeec----eeeccccceeeee----eeeeccccceeEeeeeeecCc
Confidence 88899999999876431110 00001112222210 0111111111110 01222 24556888888754
Q ss_pred -EEEEEECCCcEEEEECCCCce-eeeec-ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE----e
Q 002234 802 -KVYCGCQDGAIQEIDLATGTF-ATIQT-GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG----S 874 (949)
Q Consensus 802 -~l~sgs~Dg~I~iwd~~~~~~-~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~----~ 874 (949)
..+....|=.|.+|++.-... ..+.. .+..+..-..-|++..|||....+...|...++|++-|++...+.. .
T Consensus 176 ~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 176 KETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred cceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 467777888999999864322 11111 1122333345688999998654443333333499999998532211 1
Q ss_pred ec---C----------CCcEEEEEEcCCEEEEEECC-CeEEEEECC-CCcEEEEeccccc------------cc---eeE
Q 002234 875 LP---T----------LSEVRAMVVSSELVYLGCKG-GTVEIWDQK-RQIRIETLQTGTS------------GK---VQC 924 (949)
Q Consensus 875 ~~---~----------~~~v~~l~~s~d~l~sgs~d-g~I~vwd~~-~~~~~~~l~~~h~------------~~---I~~ 924 (949)
+. . -..|..+.|++++-+.-+.| -+|++||++ ..+++.+++ -|. +. -..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeE
Confidence 11 0 24577899998844444444 799999994 456666663 343 12 245
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 925 MALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 925 l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++|+.++.+++||+..+.++++++
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred EEEcCCcceEecccccceEEEecC
Confidence 789999999999999999999985
No 274
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.88 E-value=8.1e-10 Score=110.10 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=63.2
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCC
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
.+..-++|-||.+.++-|+.++||||||..||.+++.. +..||.||......-+ +-|..++..++.+....+
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrl-r~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRL-RGSSGSREINESHARNRD 92 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhc-ccchhHHHHHHhhhhccH
Confidence 34567899999999999999999999999999999987 5599999999998888 699999999988866443
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=9.5e-08 Score=106.57 Aligned_cols=275 Identities=12% Similarity=0.070 Sum_probs=169.9
Q ss_pred ccccccccEEEEecCCCCeEEEecCC-----------------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEe
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE-----------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 694 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~-----------------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd 694 (949)
..+.....+++.||.||.++|-.+.+ ..+++.||++.|.-+.|+.+ .|-|+..+|.|.||-
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence 33445677999999999999987641 33568899999999999985 899999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCC-ceeeeeeccceEEEEeCCC
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD-QIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~fsp~g~ 773 (949)
+-.+.+-.-..-....+.|.+++|+.||+.+.....||.|.|=.++.+. +...+.++ .... +.|++|.+
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~h-------v~ws~D~~ 169 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAH-------VLWSEDLE 169 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---ecchhcchheccc-------eeecccHH
Confidence 9888543333334567789999999999999999999999887777643 11111111 1112 23788877
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE--------e
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV--------H 845 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~--------~ 845 (949)
.+...-.+|.+.+++..+... +...-+..+.++. .+......|-.+.| -
T Consensus 170 ~~Lf~~ange~hlydnqgnF~-~Kl~~~c~Vn~tg----------------------~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFE-RKLEKDCEVNGTG----------------------IFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred HHHhhhcCCcEEEecccccHH-HhhhhceEEeeee----------------------eecCCCccccceeeccCccccCC
Confidence 665555556555555433200 0000000111100 00000011222222 2
Q ss_pred CCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC---------CeEEEEECCCCcEEEEe
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---------GTVEIWDQKRQIRIETL 914 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d---------g~I~vwd~~~~~~~~~l 914 (949)
|+...++.+-..| .+.|..-.+......+..+..+....|+++ .+++++.+ +.|.+|. .-|+.+.++
T Consensus 227 pdrP~lavcy~nG-r~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl 304 (1189)
T KOG2041|consen 227 PDRPRLAVCYANG-RMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL 304 (1189)
T ss_pred CCCCEEEEEEcCc-eehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE
Confidence 4555666655554 555554433333333444567888899988 56666543 3455554 457778888
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 915 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
+ -....|++++|-..|-.++.+ .|+.|.+
T Consensus 305 k-vpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 305 K-VPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred e-cCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 5 455689999998777666654 3666655
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.87 E-value=2.8e-06 Score=96.65 Aligned_cols=254 Identities=15% Similarity=0.204 Sum_probs=154.3
Q ss_pred EEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCC
Q 002234 674 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK 753 (949)
Q Consensus 674 l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~ 753 (949)
.....+.++.++.+|.|..+|..+| +.+..+.-......... .++..++.++.||.+..+|..+|+..-. ....
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~--~~~~ 134 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWR--AKLS 134 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeee--eccC
Confidence 3445679999999999999999999 66666543332222222 2567888899999999999999863222 2222
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC-----------CCc------eEEEEeCCEEEEEECCCcEEEEE
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYP------KCLALVQGKVYCGCQDGAIQEID 816 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~-----------~~v------~~v~~~~~~l~sgs~Dg~I~iwd 816 (949)
+.+.+.. .. .+..+.+...++.+..++.. ... .+....++.++.+..+|.+..+|
T Consensus 135 ~~~~~~p-------~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 135 SEVLSPP-------LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALD 206 (377)
T ss_pred ceeecCC-------EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEE
Confidence 2222111 00 12334444444544444421 111 11233456788999999999999
Q ss_pred CCCCceeeeecccccccCCC--CC---E-EEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCE
Q 002234 817 LATGTFATIQTGHRKLLGKA--NP---V-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL 890 (949)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~h~--~~---V-~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~ 890 (949)
..+|+.......... .+.. .. + ....+..+ .+...+.+| .+..||..+++.+....... .....+..+.
T Consensus 207 ~~tG~~~W~~~~~~~-~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g-~l~a~d~~tG~~~W~~~~~~-~~~p~~~~~~ 281 (377)
T TIGR03300 207 LQTGQPLWEQRVALP-KGRTELERLVDVDGDPVVDGG--QVYAVSYQG-RVAALDLRSGRVLWKRDASS-YQGPAVDDNR 281 (377)
T ss_pred ccCCCEeeeeccccC-CCCCchhhhhccCCccEEECC--EEEEEEcCC-EEEEEECCCCcEEEeeccCC-ccCceEeCCE
Confidence 999987643221100 0000 00 0 11122333 334445565 99999999998887766322 2344566778
Q ss_pred EEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 891 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 891 l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+++++.+|.++.+|..+++.+............+... .+..+++++.||.|.+||.
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 9999999999999999998876652111112222223 3678999999999999985
No 277
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.87 E-value=1.5e-09 Score=79.61 Aligned_cols=39 Identities=38% Similarity=0.994 Sum_probs=36.0
Q ss_pred CcCccccccCce-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 002234 21 CPITTHIFDDPV-TLETGQTYERRAIQEWIE-RGNSSCPIT 59 (949)
Q Consensus 21 Cpic~~~~~dPv-~~~cghtfc~~ci~~~~~-~~~~~CP~c 59 (949)
||||.+.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 556689987
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.86 E-value=1.9e-06 Score=96.33 Aligned_cols=233 Identities=17% Similarity=0.246 Sum_probs=147.1
Q ss_pred EEEEeCC----CcEEEEec--CCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC----CCcEEEEECCC--CeeEEEE
Q 002234 681 IFSGHSD----GTIKVWTG--RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----DKTARVWSIGN--EEIHCVQ 748 (949)
Q Consensus 681 lasgs~D----g~I~vWd~--~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~----Dg~I~vWd~~~--~~~~~~~ 748 (949)
++.|+.. +.|.+|++ .++.+..+..+. -......++++|++++|+++.. +|.|..|++.. +++..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4566666 78999988 566555555543 3444566899999999999877 47898888876 4444444
Q ss_pred eec-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC-ceeeee
Q 002234 749 VHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQ 826 (949)
Q Consensus 749 ~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~-~~~~~~ 826 (949)
... .......+. ++|+++++++. -..+|+|.+|++... ......
T Consensus 81 ~~~~~g~~p~~i~-------~~~~g~~l~va---------------------------ny~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 81 SVPSGGSSPCHIA-------VDPDGRFLYVA---------------------------NYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp EEEESSSCEEEEE-------ECTTSSEEEEE---------------------------ETTTTEEEEEEECTTSEEEEEE
T ss_pred eeccCCCCcEEEE-------EecCCCEEEEE---------------------------EccCCeEEEEEccCCcccceee
Confidence 332 223333343 77777764332 234678888888763 322211
Q ss_pred c-------ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eE--E--eecCCCcEEEEEEcCC--EE
Q 002234 827 T-------GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MV--G--SLPTLSEVRAMVVSSE--LV 891 (949)
Q Consensus 827 ~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~--~--~~~~~~~v~~l~~s~d--~l 891 (949)
. +...........+++.++|++.++.+.......|.+|++.... .. . .++.....+.+.|+|| ++
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE
Confidence 0 0000112235678999999999888876555699999997654 32 2 3346788999999999 55
Q ss_pred EEE-ECCCeEEEEECC--CCc--EEEEecc---ccc--cceeEEEEeCCCCEEEEEe-CCCcEEEEeC
Q 002234 892 YLG-CKGGTVEIWDQK--RQI--RIETLQT---GTS--GKVQCMALDDNEEFLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 892 ~sg-s~dg~I~vwd~~--~~~--~~~~l~~---~h~--~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl 948 (949)
++. -.+++|.+|++. ++. .+..+.. +.. .....++++|||++|+++. .+++|-+|++
T Consensus 207 Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 207 YVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred EEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 554 467899999988 443 2233321 111 2578899999999988776 4678999887
No 279
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=4.4e-06 Score=95.52 Aligned_cols=289 Identities=13% Similarity=0.122 Sum_probs=166.0
Q ss_pred cccEEEEecCCCCeEEEecCCceeeec--CCC---------C-ce-EEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 639 EMVKVLSNGHDSSADFWNHRELVHVDS--SEN---------G-KV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~~~~~~--~h~---------~-~V-~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
.+..++.++.++.+.-+|..+...... ... . .+ ..+....+.++.++.+|.+..+|.++| +.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG--~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDG--EVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCC--CCccc
Confidence 455666777778777777653221111 000 0 11 123445568888999999999999999 56666
Q ss_pred ecccCCCEEE-EEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCcee------eeeeccceEEEEe-CCCEEEE
Q 002234 706 IREHTKAVTG-LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ------NLAVSNSILCFIP-QGAGIKV 777 (949)
Q Consensus 706 l~~H~~~V~~-v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~------~l~~~~~~~~fsp-~g~~l~~ 777 (949)
..... .+.+ -.+ .+..++.++.+|.+..+|..+|+..-..... .+.. +-......+.+.. +|...+.
T Consensus 146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLD--VPSLTLRGESAPATAFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCC--CCcccccCCCCCEEECCEEEEEcCCCEEEEE
Confidence 54332 2221 111 2456777888999999999999632222111 1100 0000111111211 2222222
Q ss_pred EEecCeEEEecCC--CC------------ceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEE
Q 002234 778 HLRNGKTKLLNSS--KY------------PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 843 (949)
Q Consensus 778 ~~~~g~i~~~~~~--~~------------v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 843 (949)
...+|. .+|... .. ..+-.+.++.+++++.+|.+..+|..+|+...... +. ....+.
T Consensus 221 d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~----~~~~~~ 291 (394)
T PRK11138 221 LMEQGQ-LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YG----SVNDFA 291 (394)
T ss_pred EccCCh-hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CC----CccCcE
Confidence 122222 123211 00 01222346788999999999999999998765322 11 111233
Q ss_pred EeCCceEEEEEECCCCEEEEEECCCCeeEEeecC--CCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccc
Q 002234 844 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 921 (949)
Q Consensus 844 ~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~ 921 (949)
...+..|+ ++.+| .+..+|..+++.+..... .....+..+..+.++.++.+|.++++|..+|+.+...+......
T Consensus 292 ~~~~~vy~--~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~ 368 (394)
T PRK11138 292 VDGGRIYL--VDQND-RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF 368 (394)
T ss_pred EECCEEEE--EcCCC-eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 34444443 34565 899999999988765542 22334444567789999999999999999999888775332222
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 922 VQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 922 I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.....+ .+..|+.++.||.|..++.
T Consensus 369 ~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 369 LSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred eeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 222223 2457888999999998875
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=5.6e-06 Score=87.16 Aligned_cols=269 Identities=12% Similarity=0.150 Sum_probs=169.3
Q ss_pred CCCeEEEecCC-----ceeeecCCCCceEEEEEeCC--EEEEEeC---CCcEEEEecCC--CceeeeEEecccCCCEEEE
Q 002234 649 DSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRG--SILHLIQQIREHTKAVTGL 716 (949)
Q Consensus 649 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~~s~d--~lasgs~---Dg~I~vWd~~t--~~~~~i~~l~~H~~~V~~v 716 (949)
+.-|.+|++.+ .......+.+.++-++|+|+ .|.++-. +|.|-.|.++. |++..+.....-..+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57799999872 12233457788999999997 6777654 57787776664 6555554444334444889
Q ss_pred EEecCCCEEEEEeC-CCcEEEEECCC-CeeEEE-EeecCCCce---eeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 717 AILQSGEMLYSGSL-DKTARVWSIGN-EEIHCV-QVHDIKDQI---QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 717 ~fspdg~~L~Sgs~-Dg~I~vWd~~~-~~~~~~-~~~~~~~~v---~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
+++++|++++++.. -|.|.++-++. |.+... ....|.+.. ..-.-......|.|+++++++.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D----------- 163 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD----------- 163 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-----------
Confidence 99999999999876 58899999865 432221 222222220 00000112233778877654332
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC-
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY- 869 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~- 869 (949)
-.-..|.+|++..|........ .+ .......-|.|||++++.-....=+++|.+|.....
T Consensus 164 ----------------LG~Dri~~y~~~dg~L~~~~~~--~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 164 ----------------LGTDRIFLYDLDDGKLTPADPA--EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred ----------------cCCceEEEEEcccCcccccccc--cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 1224578888887765432221 11 334567889999999998877765579999998763
Q ss_pred -e--eEEe---e----cCCCcEEEEEEcCC--EEEEEEC-CCeEEEEECCC--CcEEEEe--ccccccceeEEEEeCCCC
Q 002234 870 -N--MVGS---L----PTLSEVRAMVVSSE--LVYLGCK-GGTVEIWDQKR--QIRIETL--QTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 870 -~--~~~~---~----~~~~~v~~l~~s~d--~l~sgs~-dg~I~vwd~~~--~~~~~~l--~~~h~~~I~~l~~spdg~ 932 (949)
+ .+++ + .+..+.-.+.+++| +++++.. ...|-+|.+.. ++ +... ..-+...-+...|+|+|+
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCC
Confidence 2 2222 2 23566778889998 5666543 34777887653 33 2222 123344578999999999
Q ss_pred EEEEEeCC-CcEEEEeC
Q 002234 933 FLVIGTSD-GRIQAWGL 948 (949)
Q Consensus 933 ~L~sgs~D-g~I~iWdl 948 (949)
+|++++.| ..|.+|.+
T Consensus 304 ~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 304 FLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEEccCCCcEEEEEE
Confidence 99988865 45777765
No 281
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.84 E-value=1.4e-09 Score=78.98 Aligned_cols=36 Identities=28% Similarity=0.748 Sum_probs=22.9
Q ss_pred CcCccccccC----ceecCCCccccHHHHHHHHhcC---CCCCC
Q 002234 21 CPITTHIFDD----PVTLETGQTYERRAIQEWIERG---NSSCP 57 (949)
Q Consensus 21 Cpic~~~~~d----Pv~~~cghtfc~~ci~~~~~~~---~~~CP 57 (949)
||||.+ |.+ |++|+|||+||+.||+++...+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999988754 23576
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.84 E-value=2.1e-07 Score=96.23 Aligned_cols=233 Identities=18% Similarity=0.253 Sum_probs=158.6
Q ss_pred eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 700 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
...++.++||.+.|+....-|...-+++.+.|.++|||--+ .++...-..+....++..+. +.+..+.+.++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~-------y~~e~~~L~vg 86 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME-------YVSESRRLYVG 86 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee-------eeccceEEEEE
Confidence 35677889999999999988887889999999999999643 44333333344566677776 88888999999
Q ss_pred EecCeEEEec----------------CCCCceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 779 LRNGKTKLLN----------------SSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 779 ~~~g~i~~~~----------------~~~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
..+|++.-+. +...+..+-|+ +..+++.+.|..+.---.+.+..+.-+. +. .+-+
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~----~~---~~~t 159 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN----FE---TPAS 159 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE----ee---ccCC
Confidence 9998887653 34556666665 3568888888776644444444331110 00 0011
Q ss_pred EEEEeCCceEEEEEECCCCEEEEEE--CCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec
Q 002234 841 ALQVHNGLVYTASTSLDGAAVKMWS--TSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg~~I~iwd--~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
++.+.-. +...+...| .|..-. ...-.++.++. |...+++++|.+. .+++|..|..+.+||+...+-+.-..
T Consensus 160 ~~~~d~~--~~fvGd~~g-qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSG-QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEeccccc-ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 222221122 333222 23344555665 7889999999987 89999999999999997766444444
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+|.+.|..+..-+--+.+++++.||.|-+|+++
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 6899999999888888999999999999999974
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=2.1e-06 Score=108.42 Aligned_cols=240 Identities=9% Similarity=0.048 Sum_probs=141.2
Q ss_pred ccEEEEecCCCCeEEEecCCceeeecCC---------------CCceEEEEEeCC--EEEE-EeCCCcEEEEecCCCcee
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVDSSE---------------NGKVLSIACFRD--KIFS-GHSDGTIKVWTGRGSILH 701 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h---------------~~~V~~l~~s~d--~las-gs~Dg~I~vWd~~t~~~~ 701 (949)
+..+++-..++.|++||.........+. -.....+++.++ .|+. -...+.|+++|..++
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~--- 656 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE--- 656 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---
Confidence 4466667778899999987433222221 123578889864 4444 445678999999887
Q ss_pred eeEEeccc-----------------CCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCC----C--cee
Q 002234 702 LIQQIREH-----------------TKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK----D--QIQ 757 (949)
Q Consensus 702 ~i~~l~~H-----------------~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~----~--~v~ 757 (949)
.+.++.+- -..-+.++|+| ++.++++.+.++.|++||..++....+...... + ...
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~ 736 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTS 736 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcccc
Confidence 33333210 11236799999 567778888899999999988753322211000 0 000
Q ss_pred eeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccc-------c
Q 002234 758 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-------R 830 (949)
Q Consensus 758 ~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-------~ 830 (949)
.....|..++++|+|+.+. ++-+.++.|++||+.++.......+. .
T Consensus 737 ~~~~~P~GIavspdG~~LY---------------------------VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 737 TSFAQPSGISLSPDLKELY---------------------------IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred ccccCccEEEEeCCCCEEE---------------------------EEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 0112233445666655432 23334456666666554422111000 0
Q ss_pred ccc--------CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC--------------CCcEEEEEEcC
Q 002234 831 KLL--------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--------------LSEVRAMVVSS 888 (949)
Q Consensus 831 ~~~--------~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--------------~~~v~~l~~s~ 888 (949)
.+. ........+++++++...++-+.+ +.|++||..++........ -.....+++++
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 000 011234688999988777776666 4999999988766543321 12467889988
Q ss_pred C--EEEEEECCCeEEEEECCCCcE
Q 002234 889 E--LVYLGCKGGTVEIWDQKRQIR 910 (949)
Q Consensus 889 d--~l~sgs~dg~I~vwd~~~~~~ 910 (949)
+ .+++-+.++.|++||+.+++.
T Consensus 869 dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEECCCCEEEEEECCCCcc
Confidence 7 566667889999999998764
No 284
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.1e-09 Score=100.67 Aligned_cols=52 Identities=23% Similarity=0.608 Sum_probs=45.8
Q ss_pred CcccCcCccccccC--ceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDD--PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 17 ~~~~Cpic~~~~~d--Pv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
.-+.||||++-+.. ||.+.|||.||+.||++.+..++ .||.|++.++.+.++
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFH 183 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhe
Confidence 45899999999987 66789999999999999988865 999999999988774
No 285
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.9e-09 Score=106.11 Aligned_cols=59 Identities=20% Similarity=0.447 Sum_probs=51.7
Q ss_pred CCCcccCcCccccccCceecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCCCCCCCccHH
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNYV 74 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~~n~~ 74 (949)
....|.|-||++.-+|||++.|||-||-.||.+|+... ...||+|+..++.+.++ |=+.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv-PlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV-PLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE-eeec
Confidence 45789999999999999999999999999999999843 34699999999999886 7553
No 286
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.81 E-value=1.2e-07 Score=111.85 Aligned_cols=270 Identities=19% Similarity=0.253 Sum_probs=187.5
Q ss_pred hhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhCh----hhHHHHHHhcCCChHHHHHhh---hhHHHHHHH
Q 002234 183 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRPSTRTLIEMD---MMESLMTVI 255 (949)
Q Consensus 183 ~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~----~~Aa~~l~~L~~~~~~~~~~~---~~~~lv~~l 255 (949)
+++.+.++.+|+|| +.+..+..++. ..+-++.|+.+|.+++ .-+...|-.|+-..+|+..|. .+++|+.++
T Consensus 263 eqLlrv~~~lLlNL-Aed~~ve~kM~-~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLRVAFYLLLNL-AEDPRVELKMV-NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHH-hcChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 57789999999999 55655666666 6788999999999883 345568888887777666665 449999999
Q ss_pred HhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCch
Q 002234 256 KKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR 335 (949)
Q Consensus 256 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r 335 (949)
..+.++. ...++-+| ++++.+.+.|.+|++.|.+|.|+++++.++. +..+..+|.++.. +..+|
T Consensus 341 ~s~~~~l-------~~~aLrlL------~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~--~~val~iLy~LS~-dd~~r 404 (708)
T PF05804_consen 341 PSENEDL-------VNVALRLL------FNLSFDPELRSQMVSLGLIPKLVELLKDPNF--REVALKILYNLSM-DDEAR 404 (708)
T ss_pred cCCCHHH-------HHHHHHHH------HHhCcCHHHHHHHHHCCCcHHHHHHhCCCch--HHHHHHHHHHhcc-CHhhH
Confidence 8865432 12234444 4568889999999999999999999987654 4456667666644 66799
Q ss_pred hhHhhhcCchhhHHHHHhc-CCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHH
Q 002234 336 NSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAG 414 (949)
Q Consensus 336 ~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~ 414 (949)
.+++....++.+++++-.+ +.+.....+.++.+|...+|-+ +.|.++|++ +.|+....+ -+.|+...
T Consensus 405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna------qlm~~g~gL---~~L~~ra~~---~~D~lLlK 472 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA------QLMCEGNGL---QSLMKRALK---TRDPLLLK 472 (708)
T ss_pred HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH------HHHHhcCcH---HHHHHHHHh---cccHHHHH
Confidence 9999999999999976554 4444556788888987776543 234456666 335544433 33476667
Q ss_pred HHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccccCChhhHHHHHHHHhCCCccccc
Q 002234 415 LLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKN 490 (949)
Q Consensus 415 ~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 490 (949)
++-+++.=..+.+. .+ .+.+..|++.+.+++.......+.-+|.||.-. + +.-+-+++..++-+....
T Consensus 473 lIRNiS~h~~~~k~-~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~----~--ld~~~ll~~~~llp~L~~ 540 (708)
T PF05804_consen 473 LIRNISQHDGPLKE-LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP----D--LDWAQLLQEYNLLPWLKD 540 (708)
T ss_pred HHHHHHhcCchHHH-HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC----C--cCHHHHHHhCCHHHHHHH
Confidence 77777553334333 33 457888999999998766666777777777421 1 122455666676665443
No 287
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.1e-06 Score=100.99 Aligned_cols=219 Identities=11% Similarity=0.016 Sum_probs=126.8
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCE--E-EEEeCCC--cEEEEECCCCeeEEEEeecCCCceeeeeec
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM--L-YSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~--L-~Sgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~ 762 (949)
+.|.+.|.+++. .+.+..+...+.+-.|+|||+. + ++...+| .|.+.++.+++...+... .+....
T Consensus 165 ~~l~~~d~dG~~---~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~---- 235 (428)
T PRK01029 165 GELWSVDYDGQN---LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLM---- 235 (428)
T ss_pred ceEEEEcCCCCC---ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccc----
Confidence 457777877663 2334445556677899999975 2 2444444 577778888764444332 222222
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC---ceeeeecccccccCCCCCE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG---TFATIQTGHRKLLGKANPV 839 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~~~~h~~~V 839 (949)
..|+|||+.++...... |..|..+..||+.++ ..... ..++....
T Consensus 236 ---p~wSPDG~~Laf~s~~~-----------------------g~~di~~~~~~~~~g~~g~~~~l------t~~~~~~~ 283 (428)
T PRK01029 236 ---PTFSPRKKLLAFISDRY-----------------------GNPDLFIQSFSLETGAIGKPRRL------LNEAFGTQ 283 (428)
T ss_pred ---eEECCCCCEEEEEECCC-----------------------CCcceeEEEeecccCCCCcceEe------ecCCCCCc
Confidence 34999999875443210 111223444666543 22111 11122234
Q ss_pred EEEEEeCCceEEEEEECCCCEEEEE--ECCC-CeeEEeec-CCCcEEEEEEcCC--EEEEEEC-C--CeEEEEECCCCcE
Q 002234 840 HALQVHNGLVYTASTSLDGAAVKMW--STSN-YNMVGSLP-TLSEVRAMVVSSE--LVYLGCK-G--GTVEIWDQKRQIR 910 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~Dg~~I~iw--d~~~-~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~-d--g~I~vwd~~~~~~ 910 (949)
....|+||+..++..+..++...+| ++.. +.....+. +...+....|||| .++..+. + ..|.+||+.+++.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 5679999999877766433344455 4432 22334343 3456678899998 4555443 2 4799999998876
Q ss_pred EEEeccccccceeEEEEeCCCCEEEEEeC---CCcEEEEeCC
Q 002234 911 IETLQTGTSGKVQCMALDDNEEFLVIGTS---DGRIQAWGLS 949 (949)
Q Consensus 911 ~~~l~~~h~~~I~~l~~spdg~~L~sgs~---Dg~I~iWdl~ 949 (949)
.... .....+....|+|||++|+..+. ++.|.+||++
T Consensus 364 ~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 364 YQLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEcc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 4333 22345778999999998875433 3457777763
No 288
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.79 E-value=3.9e-09 Score=81.07 Aligned_cols=47 Identities=30% Similarity=0.530 Sum_probs=40.7
Q ss_pred CcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
+++.|+||++.+.++++++|||. ||..|+.+|+.. ...||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999884 559999999875
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=2.1e-06 Score=97.24 Aligned_cols=303 Identities=14% Similarity=0.159 Sum_probs=189.7
Q ss_pred ccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeC-----C---------EEEEEeCCCcEEEEecCCCceeee
Q 002234 640 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-----D---------KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~-----d---------~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
+..++.|+ ...|.|-|.. +.++....|...|+.+.|.| + .||++...|.|.+||...+ ..+
T Consensus 26 ~GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~ 102 (1062)
T KOG1912|consen 26 SGLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVI 102 (1062)
T ss_pred cceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhh
Confidence 33455554 4567777776 56788889999999999986 1 6888999999999999998 778
Q ss_pred EEecccCCCEEEEEEec---CC-CEEEEEeCCCcEEEEECCCCeeEEEEeecCC-Cceeeeeecc---ceEE--------
Q 002234 704 QQIREHTKAVTGLAILQ---SG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIK-DQIQNLAVSN---SILC-------- 767 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fsp---dg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~-~~v~~l~~~~---~~~~-------- 767 (949)
..+..|.++|..++|-+ +. ..|+.-....++.+|+..+|+.. -.+... ....++.+.| ...+
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~--Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF--WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee--eccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 88899999999999987 33 56777777789999999988521 111111 1111122111 1122
Q ss_pred ---------------------------------------------------------EEeCCCEEEEEEecCeEEEecC-
Q 002234 768 ---------------------------------------------------------FIPQGAGIKVHLRNGKTKLLNS- 789 (949)
Q Consensus 768 ---------------------------------------------------------fsp~g~~l~~~~~~g~i~~~~~- 789 (949)
|+|.-+.+........+.++|.
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 2222222222222222233331
Q ss_pred -----------CCCceEEEEeC----CEEEEEECCCcEEEEECCC----------------Cceeeeecc---cc-----
Q 002234 790 -----------SKYPKCLALVQ----GKVYCGCQDGAIQEIDLAT----------------GTFATIQTG---HR----- 830 (949)
Q Consensus 790 -----------~~~v~~v~~~~----~~l~sgs~Dg~I~iwd~~~----------------~~~~~~~~~---~~----- 830 (949)
.+.+.-+.+-| +.++++-.||.+.+|--+. +........ .+
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~ 340 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGA 340 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceee
Confidence 12222233322 3488888888888886543 111100000 00
Q ss_pred -------------------------------------------------------------cccCCCCCEEEEEEeC---
Q 002234 831 -------------------------------------------------------------KLLGKANPVHALQVHN--- 846 (949)
Q Consensus 831 -------------------------------------------------------------~~~~h~~~V~~l~~~~--- 846 (949)
...+|.....+...+|
T Consensus 341 ~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~ 420 (1062)
T KOG1912|consen 341 SCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPE 420 (1062)
T ss_pred cCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcc
Confidence 0012333333332221
Q ss_pred --------Cc-------eEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEE----------CCCe
Q 002234 847 --------GL-------VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGC----------KGGT 899 (949)
Q Consensus 847 --------~~-------~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs----------~dg~ 899 (949)
.+ .+++.|...| +|.++|+.++.....+. |...|.++.|-++ .+++.+ .-+.
T Consensus 421 ~t~~~~~p~~n~~~~~~pLvAvGT~sG-TV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~ 499 (1062)
T KOG1912|consen 421 LTKVENDPGGNTPAGTVPLVAVGTNSG-TVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRND 499 (1062)
T ss_pred cceeecCCCCCccceeeeeEEeecCCc-eEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeee
Confidence 11 2345555555 99999999998888887 8889999999887 344432 2356
Q ss_pred EEEEECCCCcE--EEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 900 VEIWDQKRQIR--IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 900 I~vwd~~~~~~--~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.|-|+++|.. .+.++.....+|+.+..|.-|+||+..-.|.-+.+||+
T Consensus 500 l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 500 LVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred EEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence 78889998853 33344445569999999999999999999999999997
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.4e-08 Score=107.98 Aligned_cols=245 Identities=13% Similarity=0.163 Sum_probs=159.9
Q ss_pred eeeecCCCCceEEEEEeC--CEEEEEeCCCcEEEEecCCC-----ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCc
Q 002234 661 VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS-----ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 733 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~-----~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~ 733 (949)
...+.||+..|..++--. +-+++++.|.||++|.++.. ...|..+++.|+.+|.++.|-.+-++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456789999999887655 38999999999999988632 125888999999999999999988877654 788
Q ss_pred EEEEECCCCeeEE-EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE-EEE-EECCC
Q 002234 734 ARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYC-GCQDG 810 (949)
Q Consensus 734 I~vWd~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~-l~s-gs~Dg 810 (949)
|.+||.--+.+.. +......+. .+.|.|+...+.. +.. ++...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a----------------------------------~~~ikcl~nv~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGA----------------------------------GGNIKCLENVDRHILIAGCSAES 851 (1034)
T ss_pred ceeecccccchhHhhhcCcccCC----------------------------------CceeEecccCcchheeeeccchh
Confidence 9999976653111 111111111 1223333332222 333 47788
Q ss_pred cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE 889 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d 889 (949)
+|+++|.+.+.....+.. -.-.+....+.++++.+.|.+++.+-..| +|.+.|.++|+.+..+. .......++--.|
T Consensus 852 TVKl~DaRsce~~~E~kV-cna~~Pna~~R~iaVa~~GN~lAa~LSnG-ci~~LDaR~G~vINswrpmecdllqlaapsd 929 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTCELKV-CNAPGPNALTRAIAVADKGNKLAAALSNG-CIAILDARNGKVINSWRPMECDLLQLAAPSD 929 (1034)
T ss_pred hheeeecccccceeeEEe-ccCCCCchheeEEEeccCcchhhHHhcCC-cEEEEecCCCceeccCCcccchhhhhcCchh
Confidence 999999998887654321 12234456789999999999998887776 99999999999888776 3333444443334
Q ss_pred -EEEEEECCCeEEE-EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 890 -LVYLGCKGGTVEI-WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 890 -~l~sgs~dg~I~v-wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
.++....|.++.| |..-.+......+.. ..+..- .-.-|.-|+++...+.+.+|
T Consensus 930 q~L~~saldHslaVnWhaldgimh~q~kpp-pepahf--lqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 930 QALAQSALDHSLAVNWHALDGIMHLQDKPP-PEPAHF--LQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred HHHHhhcccceeEeeehhcCCeeeeccCCC-Ccchhh--hhccCceeEEeccCcEEEEE
Confidence 6777777888888 887666544444211 111000 01124556666655555555
No 291
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.73 E-value=7e-09 Score=105.58 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=42.4
Q ss_pred CCCCcccCcCccccccCc--------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFDDP--------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dP--------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
+..++..||||++.+.+| ++++|||.||+.||.+|+.. +.+||.||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 345678999999987764 56799999999999999986 459999998876
No 292
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.8e-09 Score=105.16 Aligned_cols=54 Identities=22% Similarity=0.499 Sum_probs=48.3
Q ss_pred CCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
.+..+.|.||++-++||--+||||.||-+||.+|..+.. .||.||+.+.+..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCccee
Confidence 456699999999999999999999999999999998854 799999999877653
No 293
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.71 E-value=6e-09 Score=77.65 Aligned_cols=40 Identities=40% Similarity=0.934 Sum_probs=34.3
Q ss_pred cCcCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 002234 20 VCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITR 60 (949)
Q Consensus 20 ~Cpic~~~~~---dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~ 60 (949)
.||||++-|. .++.++|||.|++.||.+|+... ..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999994 56678999999999999999884 5999996
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=1.2e-07 Score=106.25 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=167.2
Q ss_pred ccccccEEEEecCCCCeEEEecC---Cceeee-cCCCCceEEEEEeC----C-EEEEEeCCCcEEEEecCCCce-eeeEE
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHR---ELVHVD-SSENGKVLSIACFR----D-KIFSGHSDGTIKVWTGRGSIL-HLIQQ 705 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~---~~~~~~-~~h~~~V~~l~~s~----d-~lasgs~Dg~I~vWd~~t~~~-~~i~~ 705 (949)
+.+.|.-++.++.-|.. +-|.+ +....+ ....-.|-.+.|++ + .+++.+. ..-.+|++....- ..-..
T Consensus 32 i~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~ 109 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFV 109 (1081)
T ss_pred eccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEE
Confidence 44456666666666643 34544 222221 12233466778887 3 4454444 4456898864321 34445
Q ss_pred ecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 706 IREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 706 l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+.+|+..|+.+.|+| ....+++++.|-.+..||++... .++++..
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~----------~p~ys~~------------------------ 155 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH----------RPFYSTS------------------------ 155 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCC----------cceeeee------------------------
Confidence 679999999999999 46789999999999999999863 2222211
Q ss_pred EEecCCCCceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEE
Q 002234 785 KLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAV 861 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I 861 (949)
.|+.. -..++++ ++.+.+.+..+.|.+||.+.|.... ..+.+|...|+.+.|.. -...+.+.+.|+ +|
T Consensus 156 -~w~s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl-----~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~-tv 226 (1081)
T KOG0309|consen 156 -SWRSA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL-----CSLKGHVSSVNSIDFNRFKYSEIMSSSNDG-TV 226 (1081)
T ss_pred -ccccc--CceeeecccCcchhhhccCCceEEEeccCCCcce-----EEecccceeeehHHHhhhhhhhhcccCCCC-ce
Confidence 01111 1122222 3456777888899999999887654 34566888899999863 344556677776 99
Q ss_pred EEEECCCCe--eEEeecCCCcEEEEEEcCC--EEEE--EECCCeEEE---------EECCC-CcEEEEeccccccceeEE
Q 002234 862 KMWSTSNYN--MVGSLPTLSEVRAMVVSSE--LVYL--GCKGGTVEI---------WDQKR-QIRIETLQTGTSGKVQCM 925 (949)
Q Consensus 862 ~iwd~~~~~--~~~~~~~~~~v~~l~~s~d--~l~s--gs~dg~I~v---------wd~~~-~~~~~~l~~~h~~~I~~l 925 (949)
+.||..... ..++.+...+++.-.+-|= ..++ --.++.+.+ |+..+ .+++++| .||.+.|...
T Consensus 227 kfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eF 305 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEF 305 (1081)
T ss_pred eeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHHH
Confidence 999987533 3344445555655555442 1111 111223333 44333 4588999 5999988887
Q ss_pred EEeCCC----------CEEEEEeCCCcEEEEeCC
Q 002234 926 ALDDNE----------EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 926 ~~spdg----------~~L~sgs~Dg~I~iWdl~ 949 (949)
.|-..+ -.|+|-+.|.++++|-|+
T Consensus 306 lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 306 LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 775422 279999999999999874
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.4e-06 Score=93.57 Aligned_cols=288 Identities=10% Similarity=0.086 Sum_probs=169.7
Q ss_pred cccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeC-----------CCcEEEEecCCCc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS-----------DGTIKVWTGRGSI 699 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~-----------Dg~I~vWd~~t~~ 699 (949)
+.-+++.|+||+|--..| |.+|.-..-.+...-..-.|.-+.|||+ +|+|-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG- 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG- 292 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc-
Confidence 455677899999877666 6689876432222222345888999996 8888653 257899999999
Q ss_pred eeeeEEecc--cCCCEE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec-CCCceeeeeeccceEEEEeCCCEE
Q 002234 700 LHLIQQIRE--HTKAVT-GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 700 ~~~i~~l~~--H~~~V~-~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
...+.+.. ....++ -..||.|++++|--..| +|.|++...- ..+.... .-..|.... |+|.+..+
T Consensus 293 -~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--~lld~Kslki~gIr~Fs-------wsP~~~ll 361 (698)
T KOG2314|consen 293 -LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF--MLLDKKSLKISGIRDFS-------WSPTSNLL 361 (698)
T ss_pred -chhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce--eeecccccCCccccCcc-------cCCCcceE
Confidence 56666654 222333 36899999999987775 5889987663 2222111 123344545 66666655
Q ss_pred EEEEec-----CeEEE-----------------------ecCCCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeee
Q 002234 776 KVHLRN-----GKTKL-----------------------LNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQ 826 (949)
Q Consensus 776 ~~~~~~-----g~i~~-----------------------~~~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~ 826 (949)
+...-. ..+.+ |..++.-.|+.... .+.-+++.=..+.|+.++......
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-- 439 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-- 439 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc--
Confidence 443321 01111 11122222222211 000011222234555555443321
Q ss_pred cccccccCCCCCEEEEEEeCCceEEEEEECC--CCEEEEEECCC-C---eeEEeecCCCcEEEEEEcCC--EEEEE---E
Q 002234 827 TGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSN-Y---NMVGSLPTLSEVRAMVVSSE--LVYLG---C 895 (949)
Q Consensus 827 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--g~~I~iwd~~~-~---~~~~~~~~~~~v~~l~~s~d--~l~sg---s 895 (949)
....-...|...+|.|.|..++.-+.+ ..++.+|.+.+ . +.+..+. ....+.+.|+|. +++.+ |
T Consensus 440 ----e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 440 ----EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ----eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecc
Confidence 112234678889999988776665433 24788888773 2 2333333 356788999998 44443 5
Q ss_pred CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 896 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 896 ~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
..|.+.++|........+-...|. ..+.+-|.|.|+|++|+++-+
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 689999999875333333323354 568899999999999998643
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.66 E-value=1.3e-05 Score=86.40 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=120.2
Q ss_pred cccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCC-cEEEEecCCCceeeeEEecccCCCEEE
Q 002234 639 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG-TIKVWTGRGSILHLIQQIREHTKAVTG 715 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg-~I~vWd~~t~~~~~i~~l~~H~~~V~~ 715 (949)
+|.+++..|. |..-+.+.-....+..+|.+.|.-..+..+ -++.|..|| .+-|+|..++ .+..+.+.-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEE
Confidence 4666666554 334444444444556688888888887754 899999999 8999999998 55666778889999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceE
Q 002234 716 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 795 (949)
Q Consensus 716 v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~ 795 (949)
+..+++|++++.+-....+.+.|+++|..+.+. ....+-|..+. |+|++++++-+.-+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~-------~~~nsr~iAYafP~-------------- 464 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFD-------WHPNSRWIAYAFPE-------------- 464 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEE-------EcCCceeEEEecCc--------------
Confidence 999999999999999999999999999744333 33355677766 89999887655433
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 796 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 796 v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
|..-..|++||+.+++......+ . ..=.+-+|.|++.++--
T Consensus 465 ----------gy~tq~Iklydm~~~Kiy~vTT~----t---a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 465 ----------GYYTQSIKLYDMDGGKIYDVTTP----T---AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ----------ceeeeeEEEEecCCCeEEEecCC----c---ccccCcccCCCCcEEEE
Confidence 23345688888888776543221 1 12234456666665443
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=2.6e-05 Score=82.38 Aligned_cols=215 Identities=17% Similarity=0.151 Sum_probs=132.6
Q ss_pred CCCcEEEEecCCCceeeeEEeccc--CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeecc
Q 002234 686 SDGTIKVWTGRGSILHLIQQIREH--TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 686 ~Dg~I~vWd~~t~~~~~i~~l~~H--~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~ 763 (949)
.+|+|..||..+| +.+....-- .....+. ..+++..+++++.++.+..||..+|+..-.... ...+...
T Consensus 1 ~~g~l~~~d~~tG--~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~---- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTG--KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGA---- 71 (238)
T ss_dssp -TSEEEEEETTTT--EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSG----
T ss_pred CCCEEEEEECCCC--CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccce----
Confidence 3789999999999 677766421 1112211 334667788889999999999999863222211 2221111
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeee-cccccccCCCCCEEEE
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLGKANPVHAL 842 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~l 842 (949)
....++.+++++.|+.+..+|..+|+..... ........ .......
T Consensus 72 --------------------------------~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~ 118 (238)
T PF13360_consen 72 --------------------------------PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSP 118 (238)
T ss_dssp --------------------------------EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEE
T ss_pred --------------------------------eeecccccccccceeeeEecccCCcceeeeeccccccccc-cccccCc
Confidence 1233456888889999999999999988652 21100001 1112223
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCC-c-----------EEEEEEcCCEEEEEECCCeEEEEECCCCcE
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS-E-----------VRAMVVSSELVYLGCKGGTVEIWDQKRQIR 910 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~-~-----------v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~ 910 (949)
.+. +..++.+..++ .|..+|.++|+.+....... . ...+.+..+.++.++.++.+.-+|..+++.
T Consensus 119 ~~~--~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 119 AVD--GDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp EEE--TTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE
T ss_pred eEe--cCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCE
Confidence 333 33444444455 99999999999988776321 1 134444556788888888544449999997
Q ss_pred EEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 911 IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 911 ~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.... ...+... ..+++..|+.++.+|.|..||+.
T Consensus 196 ~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 196 LWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred EEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 65332 2223332 34678888888899999999974
No 298
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.64 E-value=2.4e-07 Score=94.02 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=85.5
Q ss_pred ccccccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEe---CCEEEEEeCCCcEEEEecCCCceeeeEE-ec
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSILHLIQQ-IR 707 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s---~d~lasgs~Dg~I~vWd~~t~~~~~i~~-l~ 707 (949)
++..+..++++-.+|.+.+-+.+ +..+....|.-+.+-..|+ ||.+++|+.||.+..||++... ..+.. -+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecce
Confidence 44456678888889998844433 3445778999999999998 4699999999999999999432 34444 56
Q ss_pred ccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 002234 708 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 708 ~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~ 742 (949)
.|+..|.++.-+| .+.+++||+.|-.|++||.+..
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 7999999999887 6889999999999999999864
No 299
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=2.3e-05 Score=82.61 Aligned_cols=223 Identities=14% Similarity=0.178 Sum_probs=140.5
Q ss_pred CCcEEEEecCCC--ceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCC--CeeEEEEeecCCC-ceee
Q 002234 687 DGTIKVWTGRGS--ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGN--EEIHCVQVHDIKD-QIQN 758 (949)
Q Consensus 687 Dg~I~vWd~~t~--~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~I~vWd~~~--~~~~~~~~~~~~~-~v~~ 758 (949)
+.-|++|++.+. +...+.. -.+.+..+-++|+|+++.|.++-.+ |.|-.|.++. |.+..+......+ +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467999998743 2223332 3567788999999999999998664 6777776664 5544443332222 2233
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC-CceeeeecccccccCCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKAN 837 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~ 837 (949)
++ ++++|+++++.... -|.|.++-++. |..... .....|.+
T Consensus 94 vs-------vd~~g~~vf~AnY~---------------------------~g~v~v~p~~~dG~l~~~----v~~~~h~g 135 (346)
T COG2706 94 VS-------VDEDGRFVFVANYH---------------------------SGSVSVYPLQADGSLQPV----VQVVKHTG 135 (346)
T ss_pred EE-------ECCCCCEEEEEEcc---------------------------CceEEEEEcccCCccccc----eeeeecCC
Confidence 33 77888776544433 35666666644 322211 01111222
Q ss_pred ----------CEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEe----ecCCCcEEEEEEcCC--EEEEEE-CCCeE
Q 002234 838 ----------PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS----LPTLSEVRAMVVSSE--LVYLGC-KGGTV 900 (949)
Q Consensus 838 ----------~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~----~~~~~~v~~l~~s~d--~l~sgs-~dg~I 900 (949)
-+.+..+.|++.++++....--.|.+|++..|..... ++.+...+.|.|+|+ +.++.+ -+++|
T Consensus 136 ~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV 215 (346)
T COG2706 136 SGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV 215 (346)
T ss_pred CCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence 2888999999999888764434899999998765433 235678899999999 555544 58999
Q ss_pred EEEECCCC-cEEEEec------ccc--ccceeEEEEeCCCCEEEEEeC-CCcEEEEeC
Q 002234 901 EIWDQKRQ-IRIETLQ------TGT--SGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 948 (949)
Q Consensus 901 ~vwd~~~~-~~~~~l~------~~h--~~~I~~l~~spdg~~L~sgs~-Dg~I~iWdl 948 (949)
-+|..+.. ..+..++ ..- ......|..+|||++|+++.. ...|-+|.+
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 99998873 2233222 111 235778889999999988753 235555544
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.64 E-value=0.00011 Score=79.24 Aligned_cols=209 Identities=9% Similarity=0.088 Sum_probs=140.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEEEee-cCC----Cc--eee------ee-eccceEEEEeCCCEEEEEEecCeE
Q 002234 719 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIK----DQ--IQN------LA-VSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 719 spdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~-~~~----~~--v~~------l~-~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+.||+.++- +.-|.|.++|..+..++.+... +.. .+ +.- .+ ...+.+++...|+-++...|++..
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCee
Confidence 346766554 3446799999998765544433 111 00 000 00 122345566666666666666666
Q ss_pred EEecCCCCceEEEEe--CCEEEEEECCC-cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEE
Q 002234 785 KLLNSSKYPKCLALV--QGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 861 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~--~~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I 861 (949)
....+...|+-..+. +..++.|..|| .+-+||..+++.. .+...-+.|.++..+++|.+++.+.... .+
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-------r~e~~lg~I~av~vs~dGK~~vvaNdr~-el 425 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-------RIEKDLGNIEAVKVSPDGKKVVVANDRF-EL 425 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-------EeeCCccceEEEEEcCCCcEEEEEcCce-EE
Confidence 666666667665554 46799999999 8999999998864 3344457899999999999988876443 78
Q ss_pred EEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECC----CeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEE
Q 002234 862 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 934 (949)
Q Consensus 862 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~d----g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L 934 (949)
-+.|+.+++....-+ ..+-|+.+.|+|+ +++-+--+ ..|+++|+.+++...... ..+.=.+-+|.|||++|
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 888999887654444 4567999999999 66665544 479999999988655442 12222556789999988
Q ss_pred EEEe
Q 002234 935 VIGT 938 (949)
Q Consensus 935 ~sgs 938 (949)
.--+
T Consensus 504 YfLs 507 (668)
T COG4946 504 YFLS 507 (668)
T ss_pred EEEe
Confidence 7554
No 301
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.1e-06 Score=94.91 Aligned_cols=334 Identities=13% Similarity=0.162 Sum_probs=229.7
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCcc
Q 002234 123 ELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKS 202 (949)
Q Consensus 123 el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~ 202 (949)
.+...+..+.+.+. +.+..++...+++...... +.+...+.. +++..||+.|....++.++..|..+|.++++...+
T Consensus 67 ~~~~~~~~~~S~~~-~~q~~a~~~~rkllS~~~~-ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 67 NLELMLAALYSDDP-QQQLTATQAFRKLLSKERN-PPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hhHHHHHHHhCCCH-HHHHHHHHHHHHHHccCCC-CCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh
Confidence 35556666665443 4467787788777654443 666665555 88888999998888899999999999999887655
Q ss_pred ceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcC---CChH-HHHHhhhhHHHHHHHHhccccchhcccCchhhHH
Q 002234 203 VIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLR---PSTR-TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSV 274 (949)
Q Consensus 203 ~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~---~~~~-~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~ 274 (949)
.=+.++ .+|+++.|+.+|.+. ...|+.+|.+.. +.-. -+..-+.++||++++....... ..--+.
T Consensus 144 ~T~~vv-~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~------~lRn~t 216 (514)
T KOG0166|consen 144 QTKVVV-DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLS------MLRNAT 216 (514)
T ss_pred hccccc-cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchH------HHHHHH
Confidence 555555 799999999999887 688999999995 3223 4466677799999998875421 011112
Q ss_pred HHHHHHhcCCcccccccchhhh-cchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHh
Q 002234 275 LLLGQMIGDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 353 (949)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~i-~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~ 353 (949)
-.|..|--+.+. ...+ .-...+|.|...+...+.+...-|..+|.-+.......-.++.+.|.++-|++||..
T Consensus 217 W~LsNlcrgk~P------~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 217 WTLSNLCRGKNP------SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHcCCCC------CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 222233222211 1111 122566999999999999999999999988888888889999999999999999999
Q ss_pred cCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCc-cchhHHHHHHhhhcccCC-CCCCcc
Q 002234 354 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD-QCPVVAGLLLQLDLLAEP-RKMSIY 431 (949)
Q Consensus 354 ~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~-~~~~~a~~l~~l~~l~~~-~~~~~~ 431 (949)
.+.+.+..|++.+-+.+.- ..+.-+.+-+.|.++. |..+|...+.+ .+--|+..+.+.-. +.+ ....+.
T Consensus 291 ~~~~v~~PaLRaiGNIvtG-----~d~QTq~vi~~~~L~~---l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVi 361 (514)
T KOG0166|consen 291 SSPKVVTPALRAIGNIVTG-----SDEQTQVVINSGALPV---LSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVI 361 (514)
T ss_pred CCcccccHHHhhccceeec-----cHHHHHHHHhcChHHH---HHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHH
Confidence 9999988888887775433 4445555677777754 66666656666 34446777766532 221 122233
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccccCChhhHHHHHHHHhCCCcc
Q 002234 432 REEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKS 487 (949)
Q Consensus 432 r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 487 (949)
-.+=++.|+..|.++++ +.|..||-|+.|+.- +|.+=-... |-..|.-++
T Consensus 362 da~l~p~Li~~l~~~ef-~~rKEAawaIsN~ts----~g~~~qi~y-Lv~~giI~p 411 (514)
T KOG0166|consen 362 DANLIPVLINLLQTAEF-DIRKEAAWAISNLTS----SGTPEQIKY-LVEQGIIKP 411 (514)
T ss_pred HcccHHHHHHHHhccch-HHHHHHHHHHHhhcc----cCCHHHHHH-HHHcCCchh
Confidence 44557889999999997 457789999999732 454333333 344445444
No 302
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.60 E-value=3.8e-08 Score=73.90 Aligned_cols=44 Identities=34% Similarity=0.873 Sum_probs=39.0
Q ss_pred cCcCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCCC
Q 002234 20 VCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKL 63 (949)
Q Consensus 20 ~Cpic~~~~~dPv~~~-cghtfc~~ci~~~~~~~~~~CP~c~~~~ 63 (949)
.|+||++.+.+|+.+. |||.||+.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998999875 9999999999999988667899998753
No 303
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.59 E-value=1.9e-08 Score=78.35 Aligned_cols=44 Identities=41% Similarity=0.902 Sum_probs=31.1
Q ss_pred CCcccCcCccccccCceec-CCCccccHHHHHHHHhc-CCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPIT 59 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~-~~~~CP~c 59 (949)
...+.|||++..|+|||+- .|||+|+|.+|.+|+.. +...||+.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 3478999999999999985 99999999999999943 34579984
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.58 E-value=4.1e-05 Score=95.20 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=173.8
Q ss_pred CCCCceEEEEEeCC--EEEEEeCCCcEEEE----ecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 666 SENGKVLSIACFRD--KIFSGHSDGTIKVW----TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~lasgs~Dg~I~vW----d~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
...+.|.++.|.++ .++.+..+|.|.+. |..+...+.+.. -...|.+++||||+..|+.++.+|++.+-+-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 34578999999986 78899999999999 766664444444 3678999999999999999999998876532
Q ss_pred CC-------------CeeEEE---------Eee--cCC-------Cce------ee--eeeccceEEEEeCCCEEEEEEe
Q 002234 740 GN-------------EEIHCV---------QVH--DIK-------DQI------QN--LAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 740 ~~-------------~~~~~~---------~~~--~~~-------~~v------~~--l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
.- |+.+.+ +.+ ..+ ++. .. ..-....++|-.||.++++...
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 10 000000 000 000 000 00 1112235679999999999886
Q ss_pred ---c---CeEEEecCCCCc-----------eEEEEeC-CE-EEEEEC---CCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 781 ---N---GKTKLLNSSKYP-----------KCLALVQ-GK-VYCGCQ---DGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 781 ---~---g~i~~~~~~~~v-----------~~v~~~~-~~-l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
. ..+++|+..+.. .+++|.| |. +++... ...|.+|. ++|-....+. ..+......
T Consensus 230 ~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~--l~~~~~~~~ 306 (928)
T PF04762_consen 230 EPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT--LRFDPEEEK 306 (928)
T ss_pred EcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe--cCCCCCCce
Confidence 2 467889865432 3445544 33 444332 24455555 3343332222 122345568
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCee--EEeec--CCCcEEEEEEcCC---EEEEEECCCeEEEEEC----CC
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQ----KR 907 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~--~~~~~--~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~----~~ 907 (949)
|..+.|++++..++..-.| .|.+|-..++.- .+.+. ....+..+.|+|. .+...+.+|.+..++. ..
T Consensus 307 v~~l~Wn~ds~iLAv~~~~--~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLED--RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred eeEEEECCCCCEEEEEecC--CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 9999999999999997755 599999988653 22332 3444556899876 5667766666655442 11
Q ss_pred Cc--------EEEEec----------------------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 908 QI--------RIETLQ----------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 908 ~~--------~~~~l~----------------------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+. .+..+. -.-...|.+++|++++..+++-..||+|.+|..
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 10 111110 012357999999999988999999999999874
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.58 E-value=4.7e-05 Score=80.36 Aligned_cols=226 Identities=14% Similarity=0.145 Sum_probs=132.1
Q ss_pred CCCeEEEecCCceeeecC---C-CCceEEEEE-eCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC
Q 002234 649 DSSADFWNHRELVHVDSS---E-NGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 723 (949)
Q Consensus 649 dg~I~vWd~~~~~~~~~~---h-~~~V~~l~~-s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~ 723 (949)
+|+|..||..+....... . .+...+... ..+.+++++.++.+..||..+| +.+..+.. .+.+...- ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC--CEEEEeec-ccccccee-eeccc
Confidence 567777777532221111 1 222332233 5568888899999999999999 56666553 22211111 23456
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEE
Q 002234 724 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 803 (949)
Q Consensus 724 ~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l 803 (949)
.++.++.|+.++.+|..+|+..-....... +..... ......+.++.+
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~-------------------------------~~~~~~~~~~~~ 125 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGVR-------------------------------SSSSPAVDGDRL 125 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCSTB---------------------------------SEEEEETTEE
T ss_pred ccccccceeeeEecccCCcceeeeeccccc-cccccc-------------------------------cccCceEecCEE
Confidence 777777888999999999863222111110 000000 011222335568
Q ss_pred EEEECCCcEEEEECCCCceeeeeccccccc-C---CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCC
Q 002234 804 YCGCQDGAIQEIDLATGTFATIQTGHRKLL-G---KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 879 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~---h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~ 879 (949)
+++..++.|..+|+.+|+.+.......... . ....+..-....++ .+..++.++..+.+ |..+++.+.... ..
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~ 202 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS 202 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC
Confidence 888889999999999999876543311000 0 00112222222344 44444445545666 999999776444 33
Q ss_pred cEEE-EEEcCCEEEEEECCCeEEEEECCCCcEEEE
Q 002234 880 EVRA-MVVSSELVYLGCKGGTVEIWDQKRQIRIET 913 (949)
Q Consensus 880 ~v~~-l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~ 913 (949)
.+.. .....+.+++++.++.+..||..+|+.+.+
T Consensus 203 ~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 3444 555666888888999999999999987653
No 306
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=2.5e-07 Score=96.81 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=69.8
Q ss_pred CcccCcCcccc-ccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHHHHCC
Q 002234 17 KDFVCPITTHI-FDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 17 ~~~~Cpic~~~-~~dPv----~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~~n~~l~~~i~~~~~~~~ 87 (949)
++..||+|..- ...|- +.+|||+||+.|+...+..+...||.|+.++.... ++ ++..+.+-|+--+....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F-~D~~vekEV~iRkrv~~ 80 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF-EDPTVEKEVDIRKRVLK 80 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc-ccHHHHHHHHHHHHHHH
Confidence 45689999982 22342 23799999999999977777779999999998766 43 77777776665554333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccchhhhhhhHHHHHHHHHHhhcccchh
Q 002234 88 GGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILN 138 (949)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~l~~s~~l~ 138 (949)
.......+-+ +...-...+++++.+|-.|.......
T Consensus 81 i~Nk~e~dF~---------------~l~~yNdYLE~vEdii~nL~~~~d~~ 116 (309)
T TIGR00570 81 IYNKREEDFP---------------SLREYNDYLEEVEDIVYNLTNNIDLE 116 (309)
T ss_pred HHccchhccC---------------CHHHHHHHHHHHHHHHHHhhcCCcHH
Confidence 2222111110 11233445788889998887654433
No 307
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3.2e-05 Score=85.48 Aligned_cols=260 Identities=12% Similarity=0.121 Sum_probs=160.8
Q ss_pred CceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEE-----eCCC-----cEEEE
Q 002234 669 GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-----SLDK-----TARVW 737 (949)
Q Consensus 669 ~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sg-----s~Dg-----~I~vW 737 (949)
.++...++|++ .++.-+.++.++|++..++ ..+.+... ..+.++.|+|-|++|.+= ..|+ .+++|
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~--~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATL--KVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCC--cEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34677788887 7888888899999999988 34444332 278999999999988752 2233 46699
Q ss_pred ECCCCeeEEEEeec-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-----------CCCceEEEEeCC----
Q 002234 738 SIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQG---- 801 (949)
Q Consensus 738 d~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-----------~~~v~~v~~~~~---- 801 (949)
++.++......... ..+ +... |+.|... +.....+.+.+++. ...+..+.++++
T Consensus 111 ~vet~~~~s~~q~k~Q~~--W~~q-------fs~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNG--WVPQ-------FSIDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred eeccceehhheehhhhcC--cccc-------cccchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCc
Confidence 99985321111111 111 2333 5555432 22223344444442 345666777765
Q ss_pred EEEE-----EECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc--eE-EEEEECCC--------CEEEEEE
Q 002234 802 KVYC-----GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL--VY-TASTSLDG--------AAVKMWS 865 (949)
Q Consensus 802 ~l~s-----gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~-l~s~s~Dg--------~~I~iwd 865 (949)
.+++ ++.-+.+++|............. +.+- ...-..+.|++.+ .+ +++...|. .++.+.+
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~-ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~ 257 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN-KSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA 257 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccccccchhhh-cccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence 2332 45566799998763322211110 1110 0112345555332 22 22222221 3788889
Q ss_pred CCCCeeEEeecCCCcEEEEEEcCC---E-EEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC--
Q 002234 866 TSNYNMVGSLPTLSEVRAMVVSSE---L-VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS-- 939 (949)
Q Consensus 866 ~~~~~~~~~~~~~~~v~~l~~s~d---~-l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~-- 939 (949)
+......-.+...++|.++.|+++ + ++-|-.--.+.|||++ +.++..+. .++=+++-|+|.|++++.+|-
T Consensus 258 t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 258 TQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred ecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCC
Confidence 886677777778999999999998 3 4456677899999984 66777774 345578889999999998875
Q ss_pred -CCcEEEEeCC
Q 002234 940 -DGRIQAWGLS 949 (949)
Q Consensus 940 -Dg~I~iWdl~ 949 (949)
.|.|.|||+.
T Consensus 334 L~G~mEvwDv~ 344 (566)
T KOG2315|consen 334 LPGDMEVWDVP 344 (566)
T ss_pred CCCceEEEecc
Confidence 4889999973
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=1.1e-06 Score=93.19 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=112.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
....+..+++++++|.+..++...++++.... .+.... .++.-.+..+.|..+...+.+..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-------~~v~~~~~ai~~~~~~~sv~v~d---------- 126 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-------SCVPKRPTAISFIREDTSVLVAD---------- 126 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-------eecccCcceeeeeeccceEEEEe----------
Confidence 34556677788888888888887777776642 111111 11111112222333333222111
Q ss_pred CCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC
Q 002234 790 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
..+....+.+|....+.. ..+.||-.-++.|+++||..+++++..|+ .|++-.....
T Consensus 127 ---------------kagD~~~~di~s~~~~~~-------~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~ 183 (390)
T KOG3914|consen 127 ---------------KAGDVYSFDILSADSGRC-------EPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPAT 183 (390)
T ss_pred ---------------ecCCceeeeeecccccCc-------chhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCcc
Confidence 123344555565555443 56789999999999999999999999997 9999888776
Q ss_pred eeEEeec--CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 870 NMVGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 870 ~~~~~~~--~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
..+..+. |..-|..++.-++ .+++|+.|+++++||+.+|+.+.++
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccccc
Confidence 6677666 7788999999998 6799999999999999999988766
No 309
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=5.2e-07 Score=97.88 Aligned_cols=264 Identities=14% Similarity=0.190 Sum_probs=160.6
Q ss_pred cccEEEEecCCCCeEEEecC---------CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEec--
Q 002234 639 EMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR-- 707 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~-- 707 (949)
.-+.+++++.|++|++|..+ .+..++..|+.+|.++-|-.+.-..++.||-|.+||.--+ +++....
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFig--r~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIG--RLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeeccccc--chhHhhhcC
Confidence 34567899999999999876 2677888999999999999885555667899999998777 4443221
Q ss_pred ccCCCEEEEEEec--CCCEEEEE-eCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 708 EHTKAVTGLAILQ--SGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 708 ~H~~~V~~v~fsp--dg~~L~Sg-s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
...+.+..+.--| +...++.| +...+|+++|.+.++..+....... -
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------------~---------------- 873 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------------P---------------- 873 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC--------------C----------------
Confidence 1222233333333 44455555 6789999999998763322211100 0
Q ss_pred EEecCCCCceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 785 KLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
.++..++++++. ++++++|-.+|.|.+.|.++|+.+..+.+ ..-....++ .|...+++....|. ++.
T Consensus 874 ---~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp------mecdllqla-apsdq~L~~saldH-sla 942 (1034)
T KOG4190|consen 874 ---GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP------MECDLLQLA-APSDQALAQSALDH-SLA 942 (1034)
T ss_pred ---CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc------ccchhhhhc-CchhHHHHhhcccc-eeE
Confidence 012233444443 35688899999999999999998743321 111111111 25555666666664 777
Q ss_pred E-EECCCCeeEEeecC-CCcEEEEEEcCCEEEEEECCCeEEEEECCC-C---cEEEEecc-ccccceeEEEEeCCCCEEE
Q 002234 863 M-WSTSNYNMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEIWDQKR-Q---IRIETLQT-GTSGKVQCMALDDNEEFLV 935 (949)
Q Consensus 863 i-wd~~~~~~~~~~~~-~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~-~---~~~~~l~~-~h~~~I~~l~~spdg~~L~ 935 (949)
+ |..-++....+.+. ..+..-+.--+..++++...+.+.||.-.. . ..+.+++. ...+..++++.-|-+.-+.
T Consensus 943 VnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred eeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhh
Confidence 7 87766655444432 222211111122566677777788885221 1 11222211 2345678888888887788
Q ss_pred EEeCCCcEEE
Q 002234 936 IGTSDGRIQA 945 (949)
Q Consensus 936 sgs~Dg~I~i 945 (949)
.|++.|.|.+
T Consensus 1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred ccCCCCceee
Confidence 8999998875
No 310
>PHA02926 zinc finger-like protein; Provisional
Probab=98.53 E-value=5.3e-08 Score=94.90 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=42.0
Q ss_pred CCCCcccCcCccccccC---------ceecCCCccccHHHHHHHHhcC-----CCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFDD---------PVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLS 64 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~d---------Pv~~~cghtfc~~ci~~~~~~~-----~~~CP~c~~~~~ 64 (949)
...++..|+||++...+ +++.+|+|+||..||.+|.... ...||.||+.+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45678999999998744 4677999999999999999753 246999999876
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=6.7e-05 Score=76.98 Aligned_cols=230 Identities=13% Similarity=0.109 Sum_probs=119.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEec---ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec-----
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD----- 751 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~---~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~----- 751 (949)
.++..-.|..|-|-..+..-...+.+.+ .....=..++||||+.+||.+...|+|+++|+....+..+....
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d 89 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGD 89 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCc
Confidence 4444455666666655443112222222 22233467999999999999999999999999875432222110
Q ss_pred CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeee-cccc
Q 002234 752 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ-TGHR 830 (949)
Q Consensus 752 ~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~ 830 (949)
....|..+. |.+.... . .+ .-.|++-..+|.++-|-+..+...... ....
T Consensus 90 ~~~Aiagl~-------Fl~~~~s---~------------------~w-s~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf 140 (282)
T PF15492_consen 90 LSDAIAGLI-------FLEYKKS---A------------------QW-SYELLVINYRGQLRSYLVSVGTNQGYQENHSF 140 (282)
T ss_pred cccceeeeE-------eeccccc---c------------------cc-ceeEEEEeccceeeeEEEEcccCCcceeeEEE
Confidence 011111111 2111000 0 00 013666777777777766433211000 0001
Q ss_pred cccC-CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEE---cCCE-EEEEECCCe------
Q 002234 831 KLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVV---SSEL-VYLGCKGGT------ 899 (949)
Q Consensus 831 ~~~~-h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~---s~d~-l~sgs~dg~------ 899 (949)
.+.. +...|+++.++|+..++..+|..... ++. .......+++-.+ +|.+ .+....|+.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~-------~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~ 210 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ-------DGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR 210 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEeccCCCC-------Ccc---ccccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence 2222 35689999999998777776544311 000 0001112222222 2222 222222221
Q ss_pred EEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 900 VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 900 I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
-.+|.+-+.+.. ..+....+.|..|..||||+.||+...+|.|.+|++.
T Consensus 211 ~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 211 RGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred cceeeccceeee-eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 234443332221 1223355689999999999999999999999999974
No 312
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.1e-08 Score=108.76 Aligned_cols=73 Identities=27% Similarity=0.520 Sum_probs=62.9
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCCCC
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGL 90 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~ 90 (949)
...+++.||||++.|++|++++|||+||+.|+..++. ....||.||. ... .+ .+|..+.++++.++..+....
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~-~~n~~l~~~~~~~~~~~~~~~ 81 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NL-RPNVLLANLVERLRQLRLSRP 81 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-cc-CccHHHHHHHHHHHhcCCccc
Confidence 4678999999999999999999999999999999877 5568999996 333 66 499999999999998776544
No 313
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.52 E-value=8.7e-08 Score=69.34 Aligned_cols=39 Identities=44% Similarity=1.005 Sum_probs=36.0
Q ss_pred CcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCC
Q 002234 21 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPIT 59 (949)
Q Consensus 21 Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c 59 (949)
||||++..++|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556689987
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=2.4e-06 Score=87.12 Aligned_cols=277 Identities=11% Similarity=0.157 Sum_probs=163.0
Q ss_pred CCCceEEEEEeC--CEEEEEeCCCcEEEEecCCCc---eeeeEEecccCC------------CEEEEEEecCC--CEEEE
Q 002234 667 ENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTK------------AVTGLAILQSG--EMLYS 727 (949)
Q Consensus 667 h~~~V~~l~~s~--d~lasgs~Dg~I~vWd~~t~~---~~~i~~l~~H~~------------~V~~v~fspdg--~~L~S 727 (949)
....|++|-|.. +++++|...|.|.+|.-.... .+....+++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 356789999976 499999999999999766432 234455666653 47888887654 35777
Q ss_pred EeCCCcEEEEECCCCeeEEEEeecCC--------CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe
Q 002234 728 GSLDKTARVWSIGNEEIHCVQVHDIK--------DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 799 (949)
Q Consensus 728 gs~Dg~I~vWd~~~~~~~~~~~~~~~--------~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~ 799 (949)
.+.|++|++|.+....++.+...... +++.+..-- .....+.. ..+++.....+.---|.-.+.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l-~lprls~h--d~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL-LLPRLSEH--DEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh-hccccccc--ceEEEeccceeccccceeEeeeeeec
Confidence 78899999999977543333322222 222111100 00000111 11111112222222355567888887
Q ss_pred CCE-EEEEECCCcEEEEECCCCcee-ee-ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeE----
Q 002234 800 QGK-VYCGCQDGAIQEIDLATGTFA-TI-QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV---- 872 (949)
Q Consensus 800 ~~~-l~sgs~Dg~I~iwd~~~~~~~-~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~---- 872 (949)
.+. .+....|-.|.+|++.-...- .+ -..+..+..-..-|++..|+|....+...+...+.|++-|++.....
T Consensus 182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred CchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 644 667778889999988643221 11 11111222233468888999865444333333349999999843211
Q ss_pred Eeec-------C------CCcEEEEEEcCCE-EEEEECCCeEEEEECCCCc-EEEEeccccc------------cce---
Q 002234 873 GSLP-------T------LSEVRAMVVSSEL-VYLGCKGGTVEIWDQKRQI-RIETLQTGTS------------GKV--- 922 (949)
Q Consensus 873 ~~~~-------~------~~~v~~l~~s~d~-l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~------------~~I--- 922 (949)
..+. + ...|..+.|+++. ++.+-.-.+|+|||++..+ ++.++. -|. +.|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~-~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIP-MHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeec-hHHHHHHHHHhhhhccceeee
Confidence 1111 1 2467889999994 3333444799999998654 666662 332 223
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 923 QCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 923 ~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
..+.||.|.+.+.+|+..+..-+|-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3578898999999999887776664
No 315
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.44 E-value=1.5e-07 Score=69.96 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=35.0
Q ss_pred cCcCccccc---cCceecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 002234 20 VCPITTHIF---DDPVTLETGQTYERRAIQEWIERGNSSCPITRQ 61 (949)
Q Consensus 20 ~Cpic~~~~---~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~ 61 (949)
.|+||.+.+ ..|++++|||+||..|+.+.. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 457889999999999999987 33558999985
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.43 E-value=4.2e-06 Score=85.39 Aligned_cols=237 Identities=15% Similarity=0.236 Sum_probs=140.3
Q ss_pred cccccccccEEEEecCCCCeEEEecCC-------ceeeecCCC------------CceEEEEEeCC----EEEEEeCCCc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSEN------------GKVLSIACFRD----KIFSGHSDGT 689 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~------------~~V~~l~~s~d----~lasgs~Dg~ 689 (949)
..-+...|.|+++|...|.|.+|.-.. ....+++|. ..|..+.|..+ .+...+.|.+
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt 110 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT 110 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence 344555688999999999999997652 122355563 36888888863 7777889999
Q ss_pred EEEEecCCCceeee----------------------------------------EEe-cccCCCEEEEEEecCCCEEEEE
Q 002234 690 IKVWTGRGSILHLI----------------------------------------QQI-REHTKAVTGLAILQSGEMLYSG 728 (949)
Q Consensus 690 I~vWd~~t~~~~~i----------------------------------------~~l-~~H~~~V~~v~fspdg~~L~Sg 728 (949)
|++|.+.....+.+ +.+ ..|.--|+++.|+.|...++|+
T Consensus 111 iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa 190 (460)
T COG5170 111 IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA 190 (460)
T ss_pred eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec
Confidence 99998754311110 011 2455567777777777666654
Q ss_pred eCCCcEEEEECCCCe--eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC---CEE
Q 002234 729 SLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKV 803 (949)
Q Consensus 729 s~Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~---~~l 803 (949)
.|=.|.+|++.-.. ...+...+++-. .+ ..-|++..|++ +.+
T Consensus 191 -DdLrINLWnl~i~D~sFnIVDiKP~nme--eL------------------------------teVItSaeFhp~~cn~f 237 (460)
T COG5170 191 -DDLRINLWNLEIIDGSFNIVDIKPHNME--EL------------------------------TEVITSAEFHPEMCNVF 237 (460)
T ss_pred -cceeeeeccccccCCceEEEeccCccHH--HH------------------------------HHHHhhcccCHhHcceE
Confidence 35567777765421 112221111100 00 00122233332 235
Q ss_pred EEEECCCcEEEEECCCCceee----ee----cc--cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC-CeeE
Q 002234 804 YCGCQDGAIQEIDLATGTFAT----IQ----TG--HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMV 872 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~~~~~~----~~----~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~-~~~~ 872 (949)
.-.+..|.|++-|++....-. .+ .+ ..-+.+-...|..+.|+++++|+++-.. -++++||++. ..++
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k~pi 315 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAKNPI 315 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccccCCc
Confidence 556778899999988433210 00 00 0112233467889999999999998754 4999999986 4566
Q ss_pred Eeec-C------------CCcE---EEEEEcCC--EEEEEECCCeEEEEE
Q 002234 873 GSLP-T------------LSEV---RAMVVSSE--LVYLGCKGGTVEIWD 904 (949)
Q Consensus 873 ~~~~-~------------~~~v---~~l~~s~d--~l~sgs~dg~I~vwd 904 (949)
.+++ | ...| ..+.||+| .+.+|+..+..-+|-
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 7664 2 1122 34677776 677777766666665
No 317
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.42 E-value=3e-05 Score=77.96 Aligned_cols=196 Identities=13% Similarity=0.024 Sum_probs=125.6
Q ss_pred ccEEEEecCCCCeEEEecCC---ceeeecCCCCceEEEE---EeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCC--
Q 002234 640 MVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIA---CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-- 711 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~---~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~-- 711 (949)
..+|+.||..|...+|...+ ..+....|...|+-+. -+.-.+..++.|.++++.++..+..+.. -|..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~----~h~~~~ 159 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA----VHNQNL 159 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----eecccc
Confidence 34899999999999999873 3333344555443332 2223677888999999999887632222 2333
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~ 791 (949)
.+.++++++|++++++.++...|-.|.+............ .|. ..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----------------a~t------------------~D 204 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----------------APT------------------SD 204 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----------------ccc------------------CC
Confidence 3889999999999999999999999998875422222110 000 01
Q ss_pred CceEEEEe--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE-EEEEECCCCEEEEEECCC
Q 002234 792 YPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGAAVKMWSTSN 868 (949)
Q Consensus 792 ~v~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~Dg~~I~iwd~~~ 868 (949)
.-.+..|+ +..+++++.||++.|||++.......... ..-+.|.+.+..+.|++.+.. +.-.+..-+.+.+-|+++
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 11122222 23589999999999999997654432221 233458899999999964432 222222224889999998
Q ss_pred CeeEEee
Q 002234 869 YNMVGSL 875 (949)
Q Consensus 869 ~~~~~~~ 875 (949)
+...+.+
T Consensus 284 ~~~~q~I 290 (344)
T KOG4532|consen 284 YVNHQVI 290 (344)
T ss_pred CceeeEE
Confidence 7655443
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=6.1e-06 Score=94.60 Aligned_cols=182 Identities=16% Similarity=0.112 Sum_probs=130.6
Q ss_pred CCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 667 ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 667 h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
..+.++|.+++..+++-|+.+|.|++.+.... + .+...|... ..+|.+++|||.||+|.|-.+.+++ .
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~--~ 105 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD--E 105 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc--c
Confidence 35678899999999999999999999998876 3 444456554 5689999999999999999988874 3
Q ss_pred EEeecCCCceeeeeeccceEEEEe-CCCEEEEEEecCeEEEe--------------cCCCCceEEEEeCCEEEEEECCCc
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLL--------------NSSKYPKCLALVQGKVYCGCQDGA 811 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fsp-~g~~l~~~~~~g~i~~~--------------~~~~~v~~v~~~~~~l~sgs~Dg~ 811 (949)
....+.+.++.++++.|+ |+. +.+.+++++..| +.++ ...+.|.++.+.++.++-++.+|
T Consensus 106 ~~~~df~rpiksial~Pd---~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G- 180 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPD---FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG- 180 (846)
T ss_pred ceeEecCCcceeEEeccc---hhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-
Confidence 333445778888884443 111 134455555554 3322 34678999999999888887777
Q ss_pred EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC
Q 002234 812 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 868 (949)
Q Consensus 812 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~ 868 (949)
|++||..+++.+....+.........-...+.|.++...+++.+ .+|+|..++.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIKK 234 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEec
Confidence 69999999988765554433333333455788888888877763 4899998873
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=0.00013 Score=83.46 Aligned_cols=202 Identities=9% Similarity=-0.049 Sum_probs=120.1
Q ss_pred cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCE-EEEEeCC---CcEEEEECCCCeeEEEEeecCCCceeeeeeccc
Q 002234 689 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM-LYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 689 ~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~-L~Sgs~D---g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~ 764 (949)
.|.+=|.+.. . .+.+... +.+..-.|+|||+. ++..+.+ ..|.++|+.+++...+.. ..+......
T Consensus 170 ~l~~~d~dg~--~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~---- 239 (419)
T PRK04043 170 NIVLADYTLT--Y-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSD---- 239 (419)
T ss_pred eEEEECCCCC--c-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeE----
Confidence 4555566554 2 2222223 37788999999984 6544443 568899999986554443 233333333
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 844 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 844 (949)
|+|||+.++..... ..+..|.++|+.++..... ..+........|
T Consensus 240 ---~SPDG~~la~~~~~-------------------------~g~~~Iy~~dl~~g~~~~L-------T~~~~~d~~p~~ 284 (419)
T PRK04043 240 ---VSKDGSKLLLTMAP-------------------------KGQPDIYLYDTNTKTLTQI-------TNYPGIDVNGNF 284 (419)
T ss_pred ---ECCCCCEEEEEEcc-------------------------CCCcEEEEEECCCCcEEEc-------ccCCCccCccEE
Confidence 99999876543211 1245688889887765422 222222334579
Q ss_pred eCCceEEEEEECC-C-CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEEC-C--------CeEEEEECCCCcEE
Q 002234 845 HNGLVYTASTSLD-G-AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-G--------GTVEIWDQKRQIRI 911 (949)
Q Consensus 845 ~~~~~~l~s~s~D-g-~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~-d--------g~I~vwd~~~~~~~ 911 (949)
+||+..++-.+.. | ..|.++|+.+++..+....... ...|+|| .++..+. + ..|.+.|+.++..
T Consensus 285 SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~- 361 (419)
T PRK04043 285 VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI- 361 (419)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-
Confidence 9999766665532 2 2688888887766443332222 2489998 4444332 2 3788889988864
Q ss_pred EEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 912 ETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 912 ~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
..+..+ +......|+|||+.++..+.+
T Consensus 362 ~~LT~~--~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 362 RRLTAN--GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EECCCC--CCcCCeEECCCCCEEEEEEcc
Confidence 344222 233468899999988766543
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.40 E-value=0.00016 Score=82.61 Aligned_cols=263 Identities=15% Similarity=0.154 Sum_probs=145.4
Q ss_pred EEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccC--CCEE-----EEEEec--CCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 675 ACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT--KAVT-----GLAILQ--SGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 675 ~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~--~~V~-----~v~fsp--dg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
.+..+.++.++.+|.+.-+|..+| +.+....-.. +... .+.-.| ++..++.++.+|.+..+|.++|+..
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTG--KEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCC--cEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc
Confidence 345678888999999999999999 5665543221 0000 000011 3567788889999999999998622
Q ss_pred EEEeecCCCceee-eeeccceEEEE-eCCCEEEEEEecCeEEEecCCCCc--------eEEEEeCCEEEEEECCCcEEEE
Q 002234 746 CVQVHDIKDQIQN-LAVSNSILCFI-PQGAGIKVHLRNGKTKLLNSSKYP--------KCLALVQGKVYCGCQDGAIQEI 815 (949)
Q Consensus 746 ~~~~~~~~~~v~~-l~~~~~~~~fs-p~g~~l~~~~~~g~i~~~~~~~~v--------~~v~~~~~~l~sgs~Dg~I~iw 815 (949)
-... ....+.+ ..+....+.+. .+|...+.-..+|. .+|...... .+-...++.++.++.+|.+..+
T Consensus 144 W~~~--~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 144 WQTK--VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGA-VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAV 220 (394)
T ss_pred cccc--CCCceecCCEEECCEEEEECCCCEEEEEEccCCC-EeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEE
Confidence 2111 1222211 11111111121 12222222222232 244332111 1122335678889999999999
Q ss_pred ECCCCceeeeecccccccCCC-CCE----EEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCE
Q 002234 816 DLATGTFATIQTGHRKLLGKA-NPV----HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL 890 (949)
Q Consensus 816 d~~~~~~~~~~~~~~~~~~h~-~~V----~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~ 890 (949)
|..+|+.............+. ... .+-....+..| .++.+| .+..+|..+|+.+....... ...+....+.
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy--~~~~~g-~l~ald~~tG~~~W~~~~~~-~~~~~~~~~~ 296 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY--ALAYNG-NLVALDLRSGQIVWKREYGS-VNDFAVDGGR 296 (394)
T ss_pred EccCChhhheeccccCCCccchhcccccCCCcEEECCEEE--EEEcCC-eEEEEECCCCCEEEeecCCC-ccCcEEECCE
Confidence 999998765432110000000 000 11112233333 334565 89999999998877665322 2235566778
Q ss_pred EEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 891 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 891 l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++.++.+|.+..+|..+|+.+............+... .+.+++.++.||.|.+.|.
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 9999999999999999998766542111112222222 2457788888998888774
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.39 E-value=5.6e-06 Score=82.82 Aligned_cols=238 Identities=14% Similarity=0.110 Sum_probs=135.8
Q ss_pred eEEEEEeCC-EEEEEeCCCcEEEEecCCC----------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 671 VLSIACFRD-KIFSGHSDGTIKVWTGRGS----------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 671 V~~l~~s~d-~lasgs~Dg~I~vWd~~t~----------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
|+.+.++.+ .|+++..++.+......++ ...+.+.+..|+++-.+-+.+-.++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 667777765 7888888777766554433 11233444445444333333344678999999999999988
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~ 819 (949)
+.- .. ..++.++..+. ....++...+..+.++ .+.+--.-+..+.|+++.
T Consensus 119 ~~~-~~----~~~~i~~~~~~--~as~~~~~~~~~i~s~-----------------------~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 119 DKD-LA----LMSRIPSIHSG--SASRKICRHGNSILSG-----------------------GCGNWNAQDNFYANTLDP 168 (319)
T ss_pred hHH-Hh----hhhhccccccc--ccccceeecccEEecC-----------------------CcceEeeccceeeecccc
Confidence 752 11 11111111111 1111122222221110 011111123345555543
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCC---EEEEE
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLG 894 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d---~l~sg 894 (949)
.+.... ... ....|++++-+|....++.++.+++.+.+||.++......+- |...++.+-|+|. .++++
T Consensus 169 ~~t~~~-----~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 169 IKTLIP-----SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred cccccc-----ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 332210 001 113489999998777766666666799999999875544433 7899999999876 89999
Q ss_pred ECCCeEEEEECCCCcEEE------------------E------eccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 895 CKGGTVEIWDQKRQIRIE------------------T------LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 895 s~dg~I~vwd~~~~~~~~------------------~------l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++||.+.-||..+. .+. . +.....-.|+++.. -|..|++|++-+.|++++
T Consensus 243 sedGslw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 99999999998642 111 0 00011113443333 478899999999998875
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.39 E-value=1.1e-06 Score=63.61 Aligned_cols=38 Identities=34% Similarity=0.622 Sum_probs=36.7
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
+++.++.+|.+.|++++|+|++++|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999999999999999999999999999997
No 323
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.6e-08 Score=100.86 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=59.7
Q ss_pred CCCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 002234 13 HTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 83 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~ 83 (949)
..+..+|.||||+.+++..+++ .|+|.||+.||-.-+..++..||.||+.+...--++++.....+|.+.-
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 3567899999999999999988 9999999999999999999899999999875443367776677776553
No 324
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.37 E-value=5e-05 Score=76.48 Aligned_cols=228 Identities=10% Similarity=0.038 Sum_probs=142.8
Q ss_pred EEEEEeC-------CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCe
Q 002234 672 LSIACFR-------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE 743 (949)
Q Consensus 672 ~~l~~s~-------d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~ 743 (949)
..+.|.| ++|+.|+..|...+|...+++ ...+....|...|+-+.=..| .--+.-++.|.++++.++..+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 4466666 399999999999999999763 334444455554433222122 2346678889999999988764
Q ss_pred eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCcee
Q 002234 744 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 823 (949)
Q Consensus 744 ~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~ 823 (949)
... ..+...-.+.+.. +++|+++ +++.+....|-.|.+......
T Consensus 150 ~~~-~~h~~~~~~ns~~-------~snd~~~----------------------------~~~Vgds~~Vf~y~id~~sey 193 (344)
T KOG4532|consen 150 NKF-AVHNQNLTQNSLH-------YSNDPSW----------------------------GSSVGDSRRVFRYAIDDESEY 193 (344)
T ss_pred ccc-eeeccccceeeeE-------EcCCCce----------------------------EEEecCCCcceEEEeCCccce
Confidence 211 1111111133443 7777776 444455556666665543322
Q ss_pred eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE-ee----c-CCCcEEEEEEcCC----EEEE
Q 002234 824 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-SL----P-TLSEVRAMVVSSE----LVYL 893 (949)
Q Consensus 824 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~-~~----~-~~~~v~~l~~s~d----~l~s 893 (949)
... .........-.+..|+.....+|++..|| ++.|||++...... .. + |.+.+..+.|++. .++.
T Consensus 194 ~~~---~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg-~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 194 IEN---IYEAPTSDHGFYNSFSENDLQFAVVFQDG-TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred eee---eEecccCCCceeeeeccCcceEEEEecCC-cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 110 01112233456788998889999999997 99999998744322 21 2 6788999999964 5555
Q ss_pred EECCCeEEEEECCCCcEEEEecc------ccc-cceeEEEEeCCCCEEEEEeCC
Q 002234 894 GCKGGTVEIWDQKRQIRIETLQT------GTS-GKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~~~~~l~~------~h~-~~I~~l~~spdg~~L~sgs~D 940 (949)
.-.-+.+.+.|+++++..+.+.. .|. ..|..-.|+.++..+.+.+++
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 55668899999999875554421 122 347888888888776666554
No 325
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=2e-06 Score=96.77 Aligned_cols=233 Identities=12% Similarity=0.171 Sum_probs=143.5
Q ss_pred cccccccccEEEEecCCCCeEEEecC-----CceeeecCCCCceEEEEEeC---CEEEEEeCCCcEEEEecCCCceeeeE
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ 704 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~~s~---d~lasgs~Dg~I~vWd~~t~~~~~i~ 704 (949)
.++....+..+++.+...+| +|++. ...-++.+|...|+.+.|+| +.+++++.|..+..||+.+.. .++.
T Consensus 75 ws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~y 152 (1081)
T KOG0309|consen 75 WSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFY 152 (1081)
T ss_pred cccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-ccee
Confidence 34445556678877777766 79875 24567889999999999987 599999999999999999875 4555
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.+..-...-..|+|+-....+...+..+.|++||.+.|.........+-..++.+. |..
T Consensus 153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~-------fnr-------------- 211 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID-------FNR-------------- 211 (1081)
T ss_pred eeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHH-------Hhh--------------
Confidence 55555566688999884334444566678999999988522222222233333332 110
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-----------CceEEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-----------GLVYTAS 853 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----------~~~~l~s 853 (949)
+..+.+.+.+.||+|+.||.......... ......+|..-.+.| ++...--
T Consensus 212 -------------~~~s~~~s~~~d~tvkfw~y~kSt~e~~~-----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~ 273 (1081)
T KOG0309|consen 212 -------------FKYSEIMSSSNDGTVKFWDYSKSTTESKR-----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ 273 (1081)
T ss_pred -------------hhhhhhcccCCCCceeeecccccccccce-----eccccCcceeccccccCceeEeccccCCeeeee
Confidence 11235888999999999998765433211 111122333333322 2221111
Q ss_pred EECCCCEEEEEECCC-CeeEEeec-CCCcEEEEEEc-----------CC-EEEEEECCCeEEEEECCC
Q 002234 854 TSLDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVS-----------SE-LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s-----------~d-~l~sgs~dg~I~vwd~~~ 907 (949)
.-.++ .-..|+..+ .+++.+|. |...|..+.|- .| .+++-+.|.++++|-+.+
T Consensus 274 ~~c~n-~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 274 LRCEN-SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccc-hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 11111 334555544 45778887 44555444442 12 599999999999998754
No 326
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=8.9e-05 Score=81.65 Aligned_cols=258 Identities=12% Similarity=0.093 Sum_probs=152.7
Q ss_pred ceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC-----------CCcEEE
Q 002234 670 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-----------DKTARV 736 (949)
Q Consensus 670 ~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-----------Dg~I~v 736 (949)
.-+-+.|||. +|+|-...| |.+|--.+- ..++.+. |.+ |.-+.|||+.++|+|-|. ...++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccH--HHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 3467899996 888888776 789976654 5556663 654 788999999999999754 157999
Q ss_pred EECCCCee-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC------------CCceEEEEeCCEE
Q 002234 737 WSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS------------KYPKCLALVQGKV 803 (949)
Q Consensus 737 Wd~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~------------~~v~~v~~~~~~l 803 (949)
||+.+|.. +.+........+.. ...||.|+++++--.. ..+.+++.. ..|+...++|.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP------~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~-- 357 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWP------IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPT-- 357 (698)
T ss_pred EEccccchhcceeccCCCccccc------eEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCC--
Confidence 99999962 22332222222222 3458999998876555 445555532 34666667664
Q ss_pred EEEECCCcEEEEECCCCceeeeecc-----c---ccccCCCCCEEEEEEeCCceEEEEEECC-------C--CEEEEEEC
Q 002234 804 YCGCQDGAIQEIDLATGTFATIQTG-----H---RKLLGKANPVHALQVHNGLVYTASTSLD-------G--AAVKMWST 866 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~~~~~~~~~~-----~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D-------g--~~I~iwd~ 866 (949)
+..+..|-..+......... . +.-.-|.-.=..+.|..+|.|++.--.. | ..+.|+.+
T Consensus 358 -----~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 358 -----SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred -----cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 23334444433322211000 0 1111111111234445666666543110 0 13555555
Q ss_pred CCC-eeEEeecCCCcEEEEEEcCC--EE--EEEE-CCCeEEEEECCC----CcEEEEeccccccceeEEEEeCCCCEEEE
Q 002234 867 SNY-NMVGSLPTLSEVRAMVVSSE--LV--YLGC-KGGTVEIWDQKR----QIRIETLQTGTSGKVQCMALDDNEEFLVI 936 (949)
Q Consensus 867 ~~~-~~~~~~~~~~~v~~l~~s~d--~l--~sgs-~dg~I~vwd~~~----~~~~~~l~~~h~~~I~~l~~spdg~~L~s 936 (949)
+.. -++..+.-...|..++|-|. .+ ++|. ...++.+|.+++ ...+..+.. ...+.+.|+|.|++++.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVV 509 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEE
Confidence 533 24445556778889999887 23 2332 346899998873 234455532 35688999999999987
Q ss_pred Ee---CCCcEEEEeCC
Q 002234 937 GT---SDGRIQAWGLS 949 (949)
Q Consensus 937 gs---~Dg~I~iWdl~ 949 (949)
++ ..|.+.++|.+
T Consensus 510 a~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTD 525 (698)
T ss_pred EEecccccceEEEecc
Confidence 64 57889888864
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=7.6e-06 Score=87.66 Aligned_cols=243 Identities=17% Similarity=0.178 Sum_probs=164.1
Q ss_pred CCCCceEEEEEeC-CEEEEEeCCCcEEEEecCC-CceeeeEEecccCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCC
Q 002234 666 SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNE 742 (949)
Q Consensus 666 ~h~~~V~~l~~s~-d~lasgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~ 742 (949)
-|.+.|+.+.... +++.+++.||.++.|.-.. .....+..+..|-+.|.+++.+.+|-++.|++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 4788888888776 5999999999999997654 323567777889999999999999999999888 999999998873
Q ss_pred eeEEEEeecCCCceeeeeeccceEEE-EeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE-EEECCCcEEEEECCCC
Q 002234 743 EIHCVQVHDIKDQIQNLAVSNSILCF-IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY-CGCQDGAIQEIDLATG 820 (949)
Q Consensus 743 ~~~~~~~~~~~~~v~~l~~~~~~~~f-sp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~-sgs~Dg~I~iwd~~~~ 820 (949)
.... . ..+.+-|..++| ...|.- +. .++ ..-.+|.+.++|-..+
T Consensus 87 Dmin--m-------iKL~~lPg~a~wv~skGd~------------------~s-------~IAVs~~~sg~i~VvD~~~d 132 (558)
T KOG0882|consen 87 DMIN--M-------IKLVDLPGFAEWVTSKGDK------------------IS-------LIAVSLFKSGKIFVVDGFGD 132 (558)
T ss_pred chhh--h-------cccccCCCceEEecCCCCe------------------ee-------eEEeecccCCCcEEECCcCC
Confidence 2110 0 001111111111 111110 00 233 3346788999998766
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC------CeeEEeec----------CCCcEEEE
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMVGSLP----------TLSEVRAM 884 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~------~~~~~~~~----------~~~~v~~l 884 (949)
.+... ..-.-|..+|..+.+.+-+...++....| .|.-|.... .+....++ ......++
T Consensus 133 ~~q~~----~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 133 FCQDG----YFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred cCccc----eecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 54321 12234889999999999888888876665 999998762 11112222 24567899
Q ss_pred EEcCC--EEEEEECCCeEEEEECCCCcEEEEecc-------------------------------cccc-ceeEEEEeCC
Q 002234 885 VVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------------------------------GTSG-KVQCMALDDN 930 (949)
Q Consensus 885 ~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~-------------------------------~h~~-~I~~l~~spd 930 (949)
.|+|+ .+.+-+.|..|++++..+|+.++.+.. .|.. .-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 99998 677778999999999999886655421 0111 3356678888
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 002234 931 EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 931 g~~L~sgs~Dg~I~iWdl 948 (949)
|++|+-|+-=| |+|.++
T Consensus 288 ~~flly~t~~g-ikvin~ 304 (558)
T KOG0882|consen 288 GNFLLYGTILG-IKVINL 304 (558)
T ss_pred CCEEEeeccee-EEEEEe
Confidence 99998887654 555544
No 328
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.33 E-value=4.3e-06 Score=88.78 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=80.3
Q ss_pred CCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEE
Q 002234 857 DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 934 (949)
Q Consensus 857 Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L 934 (949)
|...+.+|+...+.+...+.|-+.+..++++|| +++++..|..|+|-.......+..+--||...|..++.-+ +..|
T Consensus 130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~L 208 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLL 208 (390)
T ss_pred CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Ccee
Confidence 335788888877777777778899999999999 8999999999999998888888888789999999999975 4569
Q ss_pred EEEeCCCcEEEEeCC
Q 002234 935 VIGTSDGRIQAWGLS 949 (949)
Q Consensus 935 ~sgs~Dg~I~iWdl~ 949 (949)
++||.|++|++||+.
T Consensus 209 lS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDIT 223 (390)
T ss_pred eecCCCCcEEEEecc
Confidence 999999999999974
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.2e-07 Score=90.04 Aligned_cols=77 Identities=31% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 89 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 89 (949)
+.++|+-++|.|..++|++||++|.|-||.|.-|.+++.+-...-|++|.+++..+++ ||+.|+..|..|.+.|.+.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~i-pN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLI-PNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhc-cchHHHHHHHHHHHhcccc
Confidence 4689999999999999999999999999999999999987566999999999999997 9999999999999999875
No 330
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.33 E-value=0.00017 Score=79.01 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=164.1
Q ss_pred EEecCC-ce-eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe
Q 002234 654 FWNHRE-LV-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS 729 (949)
Q Consensus 654 vWd~~~-~~-~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs 729 (949)
+|+... .. ..+....-++..++|||. +|++.... .|.+|+.... ..+..+. | ..|..+.|+|.+++|.|=+
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~--~~l~~~~-~-~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSK--AKLVRFR-H-PDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccch--hheeeee-c-CCceecccCcccceeeeec
Confidence 465542 22 223336778999999996 66666554 5899998877 3444442 4 4589999999999999876
Q ss_pred CCC---------------cEEEEECCCCeeEEEEeec-CCCc--eeeeeeccceEEEEeCCCEEEEEEecCeEEEecC--
Q 002234 730 LDK---------------TARVWSIGNEEIHCVQVHD-IKDQ--IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-- 789 (949)
Q Consensus 730 ~Dg---------------~I~vWd~~~~~~~~~~~~~-~~~~--v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-- 789 (949)
..+ .+.+||+.+|. .+..+. ...+ .+ ....|+-+..+++-. ....+.+++.
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~--iv~sf~~~~q~~~~W------p~~k~s~~D~y~ARv-v~~sl~i~e~t~ 161 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGM--IVFSFNGISQPYLGW------PVLKFSIDDKYVARV-VGSSLYIHEITD 161 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCce--eEeeccccCCccccc------ceeeeeecchhhhhh-ccCeEEEEecCC
Confidence 543 48999999985 222221 1111 11 122366665554332 2233344431
Q ss_pred -----------CCCceEEEEeCC----EEEE-----EECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCce
Q 002234 790 -----------SKYPKCLALVQG----KVYC-----GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 790 -----------~~~v~~v~~~~~----~l~s-----gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 849 (949)
...+....++|. .|+. +..++++++|.+..+..+.... +. ...-..+.|++.+.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~----lf--k~~~~qLkW~~~g~ 235 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN----LF--KVSGVQLKWQVLGK 235 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee----eE--eecccEEEEecCCc
Confidence 134555556553 1222 4567788888888666553211 10 01123456666666
Q ss_pred EEEEEECC----------CCEEEEEECCCCeeEEeecCCCcEEEEEEcCC----EEEEEECCCeEEEEECCCCcEEEEec
Q 002234 850 YTASTSLD----------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 850 ~l~s~s~D----------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d----~l~sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
++..--.. .+.+.++++....+.......++|..++|+|+ .+++|-.+-.+.++|++.. ....+.
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P 314 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP 314 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC
Confidence 65442110 13678888874444333345789999999887 3555678889999999776 444443
Q ss_pred cccccceeEEEEeCCCCEEEEEeCC---CcEEEEeC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 948 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~D---g~I~iWdl 948 (949)
...=+.+.|||.+++++.++-| |.|-+||.
T Consensus 315 ---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 315 ---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ---CcccccccccCcccEEEEecCCccccceEEecc
Confidence 2234567799999998887754 66888874
No 331
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.31 E-value=6.4e-05 Score=89.32 Aligned_cols=367 Identities=15% Similarity=0.175 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhcc--CCchhHHHHHHHHHHhhc
Q 002234 120 TITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN--SVDPRVLEATIFLLSELG 197 (949)
Q Consensus 120 ~~~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~--s~~~~~~~~av~~L~~l~ 197 (949)
+...+...|+.+... ..+..++...|..+++.-+. .......+.++..+-++|.. -.+-++.-+.+++...++
T Consensus 121 ~~~~~d~yiE~lYe~--~~ek~~~~~~il~La~~~~N---L~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 121 SINDLDEYIELLYED--IPEKIRGTSLILQLARNPEN---LEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCcch---HHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 467888888888743 45567777788888764322 11223455556666666655 234566667777777665
Q ss_pred ccCccceeeccccCCcHHH-HHHHHhhC--hhhHHH-HHHhc----CCChHHHHHhhh-hHHHHHHHHhccccchhcccC
Q 002234 198 SRDKSVIHTLTRVESDVER-IVALFKKG--LLEAVV-LIDLL----RPSTRTLIEMDM-MESLMTVIKKKEEDFLKMCLK 268 (949)
Q Consensus 198 ~~~~~~~~~i~~~~~~i~~-l~~llk~g--~~~Aa~-~l~~L----~~~~~~~~~~~~-~~~lv~~l~~~~~~~~~~~~~ 268 (949)
+... ...+. ...-|.. -+.++--. +.+.-. -+... ...+.++...+. .+.+-.++++.. ++
T Consensus 196 ~f~~--fH~~l-~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQe--qL----- 265 (708)
T PF05804_consen 196 NFSQ--FHPIL-AHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQE--QL----- 265 (708)
T ss_pred hHHH--HHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHH--HH-----
Confidence 4322 11111 0011111 11221111 111000 00000 011111111111 122222222211 10
Q ss_pred chhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhH
Q 002234 269 PKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 348 (949)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~ 348 (949)
-.+++++|- +++.+..+...++..|.+++|+++|+.++.+....++.+|-++.-.. .+++.|.+.+.+++|+
T Consensus 266 -lrv~~~lLl------NLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 266 -LRVAFYLLL------NLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLL 337 (708)
T ss_pred -HHHHHHHHH------HHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHH
Confidence 023455553 34788899999999999999999999999999999999888775444 4688899999999999
Q ss_pred HHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCC
Q 002234 349 ESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM 428 (949)
Q Consensus 349 ~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~ 428 (949)
.++.+.+......++.+|.+|... .++...+.+.|.++. |+.+|.. +..+..+-.+|-+++.-.+.+.+
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd------~~~R~~mV~~GlIPk---Lv~LL~d--~~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD------PELRSQMVSLGLIPK---LVELLKD--PNFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC------HHHHHHHHHCCCcHH---HHHHhCC--CchHHHHHHHHHHhccCHhhHHH
Confidence 999999888888899999999765 345667899999976 6666653 56777889999999887766666
Q ss_pred CccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccccCChhhHHHHHHHHhCCCcccccccc------ccccccccC
Q 002234 429 SIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTR------TEQIGNICG 502 (949)
Q Consensus 429 ~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 502 (949)
-.|. ++++.|+..|-++..++++..+.-.+.||+-.- .+++ -+.+..|++.-.+..++ -+.|||++.
T Consensus 407 f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-----rnaq-lm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~ 479 (708)
T PF05804_consen 407 FAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNK-----RNAQ-LMCEGNGLQSLMKRALKTRDPLLLKLIRNISQ 479 (708)
T ss_pred Hhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-----HHHH-HHHhcCcHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 6655 589999998888877776666666777775431 1222 22333344332211111 145677776
Q ss_pred CCCCchHHhhhhhHHHHHHHHHhhccCc
Q 002234 503 EDDDTSEEEKAADDWERKMALVLVSHDF 530 (949)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~ 530 (949)
... ...+ ...+|-..++..+...+.
T Consensus 480 h~~-~~k~--~f~~~i~~L~~~v~~~~~ 504 (708)
T PF05804_consen 480 HDG-PLKE--LFVDFIGDLAKIVSSGDS 504 (708)
T ss_pred cCc-hHHH--HHHHHHHHHHHHhhcCCc
Confidence 331 2222 335788888887655543
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=6.3e-07 Score=102.42 Aligned_cols=218 Identities=12% Similarity=0.146 Sum_probs=145.4
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCC--cEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TAR 735 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg--~I~ 735 (949)
....+..|+...+|++|+.+ +|+.|+..|.|+++++.+| .......+|..+|+-+.=+.||..+++.+.-. -..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44567789999999999985 9999999999999999999 77788899999999999888998877665533 367
Q ss_pred EEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE--EEEEECCCcEE
Q 002234 736 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK--VYCGCQDGAIQ 813 (949)
Q Consensus 736 vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~--l~sgs~Dg~I~ 813 (949)
+|+...- .+++.+. ..-.++.|++.. -+.|+......
T Consensus 1171 LW~~~s~----------~~~~Hsf-------------------------------~ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1171 LWDASST----------GGPRHSF-------------------------------DEDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred Hhccccc----------cCccccc-------------------------------cccceeehhhhHHHHHhcccccceE
Confidence 8987652 1111110 011233333211 34455557789
Q ss_pred EEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EE
Q 002234 814 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LV 891 (949)
Q Consensus 814 iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l 891 (949)
+||+.++....++-. ...+....-++..|+|...++.- || .+||++..+.++.|..-..-..-.|+|+ -+
T Consensus 1210 ~YDvqT~~~l~tylt--~~~~~~y~~n~a~FsP~D~LIln---dG---vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLT--DTVTSSYSNNLAHFSPCDTLILN---DG---VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEV 1281 (1516)
T ss_pred EEecccCcHHHHhcC--cchhhhhhccccccCCCcceEee---Cc---eeeeeccHHHHhhhhhheecccccccCCCceE
Confidence 999999987654221 11222233367788888777653 45 6899998887777763222223346666 45
Q ss_pred EEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEE
Q 002234 892 YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 936 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~s 936 (949)
+..+ .|||++|.+.++....- .-..+.|+..|+.++.
T Consensus 1282 IINS-----EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1282 IINS-----EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred Eeec-----hhhhhHHHHHHhcCccc---cceEEEeccCccchhh
Confidence 5444 48999998887766311 2355677777776553
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=1.9e-06 Score=62.36 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=36.0
Q ss_pred CcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 908 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 908 ~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++++.++ .+|.+.|++++|+|++++|++|+.||+|++||
T Consensus 1 g~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3577888 59999999999999999999999999999997
No 334
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.1e-07 Score=92.06 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=46.6
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHH-HHhcCCCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQE-WIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~-~~~~~~~~CP~c~~~~~~~~~ 68 (949)
..++.|+||.+.+.+|+-++|||.||-.||-. |-.+....||.||+......+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 57999999999999999999999999999999 877766679999988765543
No 335
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.25 E-value=0.0041 Score=66.00 Aligned_cols=222 Identities=12% Similarity=0.103 Sum_probs=130.4
Q ss_pred EEEEeC-C--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 002234 673 SIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL-QSGEMLYSGSLDKTARVWSIGNEEIHCVQ 748 (949)
Q Consensus 673 ~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fs-pdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~ 748 (949)
++.|.+ + ++++.-..+.|..||..++. . ..+.... ...+.+. +++. ++.+..++ +.++|..+++...+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~-~~~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--V-EVIDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--E-EEEESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--E-EEEecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEe
Confidence 567776 3 66666678999999999883 2 2222122 6778888 5654 45555544 566699998755544
Q ss_pred eec----CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 749 VHD----IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 749 ~~~----~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
... .....+.+. +.|+|+..++......... ...|.|..++.. ++...
T Consensus 77 ~~~~~~~~~~~~ND~~-------vd~~G~ly~t~~~~~~~~~--------------------~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVA-------VDPDGNLYVTDSGGGGASG--------------------IDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp EEETTCSCTEEEEEEE-------E-TTS-EEEEEECCBCTTC--------------------GGSEEEEEEETT-SEEEE
T ss_pred eccCCCcccCCCceEE-------EcCCCCEEEEecCCCcccc--------------------ccccceEEECCC-CeEEE
Confidence 442 122333443 7777763222211100000 000456666666 44332
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe-------eEEeecCC-CcEEEEEEcCC-EEEE-E
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-------MVGSLPTL-SEVRAMVVSSE-LVYL-G 894 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~-------~~~~~~~~-~~v~~l~~s~d-~l~s-g 894 (949)
... .-...+.++|+|++..+.......+.|..+++.... ....+... .....+++..+ .+++ .
T Consensus 129 ~~~-------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 129 VAD-------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEE-------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred Eec-------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 221 124578999999998766554444589999885321 11222222 35888999887 4444 4
Q ss_pred ECCCeEEEEECCCCcEEEEeccccccceeEEEEe-CCCCEEEEEe
Q 002234 895 CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGT 938 (949)
Q Consensus 895 s~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s-pdg~~L~sgs 938 (949)
...+.|.++|.+ |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 202 ~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 202 WGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 468899999987 8888888655 3489999994 6766665543
No 336
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=9.8e-05 Score=84.20 Aligned_cols=238 Identities=12% Similarity=0.050 Sum_probs=152.1
Q ss_pred CCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCC------------CEEEEEeCCCc
Q 002234 667 ENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG------------EMLYSGSLDKT 733 (949)
Q Consensus 667 h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg------------~~L~Sgs~Dg~ 733 (949)
|...-.++.|+|. +||-|+ ...|.|-|..+- +.++.+..|...|+.+.|.|-. -.|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~GLiAygs-hslV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGS-HSLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccceEEEec-CceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 3344678999997 555555 467889998887 8999999999999999997631 25777788899
Q ss_pred EEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEE
Q 002234 734 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 813 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~ 813 (949)
|.+||...+. .......+.+++..+. |-+...- +.+.+++-....++.
T Consensus 91 Iil~d~~~~s-~~~~l~~~~~~~qdl~-------W~~~rd~------------------------Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 91 IILVDFVLAS-VINWLSHSNDSVQDLC-------WVPARDD------------------------SRDVLLAIHGSSTLV 138 (1062)
T ss_pred EEEEEehhhh-hhhhhcCCCcchhhee-------eeeccCc------------------------chheeEEecCCcEEE
Confidence 9999998874 2333344566666665 3332110 012366667778899
Q ss_pred EEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECC-C------CeeEEeec-CCC-----
Q 002234 814 EIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTS-N------YNMVGSLP-TLS----- 879 (949)
Q Consensus 814 iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~-~------~~~~~~~~-~~~----- 879 (949)
+|+..+|+....+. .......++.++| |...+...+..| .+-+-+.- . ++..+.-. |..
T Consensus 139 LwntdtG~k~Wk~~------ys~~iLs~f~~DPfd~rh~~~l~s~g-~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 139 LWNTDTGEKFWKYD------YSHEILSCFRVDPFDSRHFCVLGSKG-FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred EEEccCCceeeccc------cCCcceeeeeeCCCCcceEEEEccCc-eEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 99999998875332 1223556677765 333333333333 44444321 1 11111111 100
Q ss_pred --------------------cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCC--CEEE
Q 002234 880 --------------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE--EFLV 935 (949)
Q Consensus 880 --------------------~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg--~~L~ 935 (949)
..-.++|+|. .++.......+.|+|++-..++.... -..+.+.-+.|-||+ ..|+
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeEeccCCCcceEE
Confidence 0123556776 45555667789999999888888774 344455666777766 5899
Q ss_pred EEeCCCcEEEEe
Q 002234 936 IGTSDGRIQAWG 947 (949)
Q Consensus 936 sgs~Dg~I~iWd 947 (949)
+...||.+.+|-
T Consensus 291 clH~nG~ltirv 302 (1062)
T KOG1912|consen 291 CLHSNGRLTIRV 302 (1062)
T ss_pred EEecCCeEEEEE
Confidence 999999999984
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.21 E-value=0.0018 Score=68.77 Aligned_cols=237 Identities=15% Similarity=0.186 Sum_probs=146.4
Q ss_pred EEEEEeCC---EEEEEeCCCc-EEEEecCCCceeeeEEecccCCCE--EEEEEecCCCEEEEEeC-----CCcEEEEECC
Q 002234 672 LSIACFRD---KIFSGHSDGT-IKVWTGRGSILHLIQQIREHTKAV--TGLAILQSGEMLYSGSL-----DKTARVWSIG 740 (949)
Q Consensus 672 ~~l~~s~d---~lasgs~Dg~-I~vWd~~t~~~~~i~~l~~H~~~V--~~v~fspdg~~L~Sgs~-----Dg~I~vWd~~ 740 (949)
..++.+|+ .++.+-.-|+ ..+||..++ +....+....+.- -.-.||+||++|++.=. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44566662 5666666664 567888888 4444443222221 12579999999998744 5889999999
Q ss_pred CCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe-CCEEEEEECCCcEEEEECC
Q 002234 741 NEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 741 ~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~ 818 (949)
.+- ..+..+ .+.-. |..+.+.|||+.+++.... |..- .-. ..++-..+.+.++.+.|..
T Consensus 86 ~~~-~ri~E~~s~GIG-------PHel~l~pDG~tLvVANGG--I~Th---------pd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 86 RGY-RRIGEFPSHGIG-------PHELLLMPDGETLVVANGG--IETH---------PDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred CCc-EEEeEecCCCcC-------hhhEEEcCCCCEEEEEcCC--CccC---------cccCceecChhhcCCceEEEecC
Confidence 442 333322 22222 3334489999887776422 1100 000 0124455677788888889
Q ss_pred CCceeeeecccccc--cCCCCCEEEEEEeCCceEEEEEECCCC------EEEEEECCCCeeEEeec--------CCCcEE
Q 002234 819 TGTFATIQTGHRKL--LGKANPVHALQVHNGLVYTASTSLDGA------AVKMWSTSNYNMVGSLP--------TLSEVR 882 (949)
Q Consensus 819 ~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~Dg~------~I~iwd~~~~~~~~~~~--------~~~~v~ 882 (949)
+|+.+... .+ .-|...|.-+++.+++...+..-..|. -+-+++... .+..+. -...+-
T Consensus 147 sG~ll~q~----~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 147 SGALLEQV----ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred CCceeeee----ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceE
Confidence 99887542 23 346778999999999888777655441 334444332 222222 246789
Q ss_pred EEEEcCC--EEEE-EECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 883 AMVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 883 ~l~~s~d--~l~s-gs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
+++++++ .+++ +-..|.+.+||..+++.+.... -..+..++-.+++ +++|.+.
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 9999988 4544 4467899999999999887763 2346777777766 6665554
No 338
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=3.2e-06 Score=87.63 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=116.3
Q ss_pred EEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEEEeecCCCceee
Q 002234 682 FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQN 758 (949)
Q Consensus 682 asgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~v~~ 758 (949)
++.+.+-.|-+-|++|| ..+.|. ..+.|.++.|...++++..|..+|.|...|++.+. ..+....-|...|++
T Consensus 228 fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 66677778999999998 445554 67789999999989999999999999999998751 223333333334433
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
+. .+.+++.+|.+.+.+|+|++||.+--++.. +.....||.+.
T Consensus 304 lq----------------------------------~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---~V~qYeGHvN~ 346 (425)
T KOG2695|consen 304 LQ----------------------------------ILQFSQQKLMASDMTGKIKLYDLRATKCKK---SVMQYEGHVNL 346 (425)
T ss_pred hh----------------------------------hhccccceEeeccCcCceeEeeehhhhccc---ceeeeeccccc
Confidence 32 234455679999999999999998776621 11455666555
Q ss_pred EEEEEE--eCCceEEEEEECCCCEEEEEECCCCeeEEeecCC-----CcEEEEEEcC
Q 002234 839 VHALQV--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSS 888 (949)
Q Consensus 839 V~~l~~--~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s~ 888 (949)
-..+-+ ++....+++++.| ...+||.++++..+.+++.. ..+.+++|..
T Consensus 347 ~a~l~~~v~~eeg~I~s~GdD-cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 347 SAYLPAHVKEEEGSIFSVGDD-CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccccccccccccceEEEccCe-eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 444444 4666677777766 59999999999999988743 2455555543
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.4e-05 Score=79.38 Aligned_cols=239 Identities=10% Similarity=0.076 Sum_probs=139.3
Q ss_pred eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEE
Q 002234 661 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARV 736 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~v 736 (949)
.+.+.+|...|..++|||. ++..++.+.+|+|.|+++. .++..+..| ..+|+++|.-| .++++.|-..|.|.|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 4467788999999999994 7899999999999999998 678888777 88999999985 567888888999999
Q ss_pred EECCCCeeEEE--EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec---------------CCCCceEEEEe
Q 002234 737 WSIGNEEIHCV--QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN---------------SSKYPKCLALV 799 (949)
Q Consensus 737 Wd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~---------------~~~~v~~v~~~ 799 (949)
||++..+.... ...-...+|..++.-+... ..+.|..++..... ..+|+ ..+...++.+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~-~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNK-IFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccc-cccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeec
Confidence 99987651111 1112234555544322221 22223333222211 11221 12333344444
Q ss_pred C--CEEEEEECC-Cc-------EEEEECCCCceeeeecccccccCCCCC---EEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 800 Q--GKVYCGCQD-GA-------IQEIDLATGTFATIQTGHRKLLGKANP---VHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 800 ~--~~l~sgs~D-g~-------I~iwd~~~~~~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
+ ++++..... .+ .---|-.+|..+...... .+.+...+ -..+.-.++..+++..+.+-+.+.+||.
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~-~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT-YFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeeccc-ccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 3 333332221 10 001222333333211100 00000001 1112223455777777666679999999
Q ss_pred CCCeeEEeecCCCcEEEEEEcCC----EEEEEECCCeEEEEECCC
Q 002234 867 SNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 867 ~~~~~~~~~~~~~~v~~l~~s~d----~l~sgs~dg~I~vwd~~~ 907 (949)
.++..++++....+|..++...- ++++-+ |..++||..++
T Consensus 419 ~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 419 HSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred chhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 99999999998888888776432 444444 55788876543
No 340
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.21 E-value=0.0017 Score=68.99 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=129.0
Q ss_pred cccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEe-CC-EEEEEeCCCcEEEEecCCCceeeeEEec--c-cCCCE
Q 002234 639 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--E-HTKAV 713 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s-~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~--~-H~~~V 713 (949)
++..+++.-..+.|..|+..+.........+ ...+++. ++ .++.+..++ +.++|..+++.+.+.... . .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCC
Confidence 5667777778899999998864443322233 6777777 54 666666654 556699998655555552 2 34678
Q ss_pred EEEEEecCCCEEEEEeCC--------CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 714 TGLAILQSGEMLYSGSLD--------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~D--------g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
+.+++.|+|++.++.... |.|..++.. ++...... .-. .++.++|+|+++.+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~-------~pNGi~~s~dg~~l---------- 148 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG-------FPNGIAFSPDGKTL---------- 148 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES-------SEEEEEEETTSSEE----------
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc-------cccceEECCcchhe----------
Confidence 999999999977776654 456667766 43222211 112 23345599998864
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce-eeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 864 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw 864 (949)
+++-+..+.|..|++..... +........+....+....++++.++.+.++....+ .|.++
T Consensus 149 -----------------yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~-~I~~~ 210 (246)
T PF08450_consen 149 -----------------YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG-RIVVF 210 (246)
T ss_dssp -----------------EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT-EEEEE
T ss_pred -----------------eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC-EEEEE
Confidence 33445667788888754332 111000011122223478899998887777655454 99999
Q ss_pred ECCCCeeEEeecC-CCcEEEEEEc
Q 002234 865 STSNYNMVGSLPT-LSEVRAMVVS 887 (949)
Q Consensus 865 d~~~~~~~~~~~~-~~~v~~l~~s 887 (949)
|.. |+.+..+.. ...+++++|.
T Consensus 211 ~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 211 DPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp ETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred CCC-ccEEEEEcCCCCCEEEEEEE
Confidence 987 888887774 3689999994
No 341
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8e-07 Score=97.43 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=54.3
Q ss_pred CcccCcCccccccCceecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCCCCCCCcc----HHHHHHHHHHHHHCC
Q 002234 17 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER----GNSSCPITRQKLSSTKLPKTN----YVLKRLIASWQEQNP 87 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~----~~~~CP~c~~~~~~~~~~~~n----~~l~~~i~~~~~~~~ 87 (949)
.+..||||++...=|+.+.|||.||-.||-+++.. +...||.|+..+...++. |- ..-+.-++..+..|+
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~-pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL-PVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee-eeeeccccccHHHHHHhcccC
Confidence 38999999999999999999999999999997664 345899999998876652 33 333444556666665
No 342
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.18 E-value=2.7e-06 Score=85.58 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=57.4
Q ss_pred ccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 19 FVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQK-LSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 19 ~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~-~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
+.||.|+.++++|+.+ +|||+||..||+..+-.....||.|... +-...+. |+...+..|+++...+..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~-pD~dk~~EvE~~lkkq~~ 345 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLT-PDIDKKLEVEKALKKQRK 345 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccC-ccHHHHHHHHHHHHHHHH
Confidence 8999999999999998 9999999999999776666799999653 3344564 999999999999775443
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=0.0047 Score=62.43 Aligned_cols=299 Identities=14% Similarity=0.153 Sum_probs=147.6
Q ss_pred ccEEEEecCCCCeEEEecCCceee-ecCCCCceEEEEE-eCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEE
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHV-DSSENGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 717 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~-~~~h~~~V~~l~~-s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~ 717 (949)
.++++.|+..+.+.--|..+.... ..--.+.|-+-+. -.|+++.|++.|.+++-+.++| ..++.+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTG--SQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecch--hheeeeeehhhhccceE
Confidence 357778888888877777642222 1122333433322 4579999999999999999999 56666643322112234
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCcee---eeeeccc-eEEEEeCCCEEEEEEecCe-EEEecCC--
Q 002234 718 ILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ---NLAVSNS-ILCFIPQGAGIKVHLRNGK-TKLLNSS-- 790 (949)
Q Consensus 718 fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~---~l~~~~~-~~~fsp~g~~l~~~~~~g~-i~~~~~~-- 790 (949)
..+++..+..|+.|++.+.-|..+.. ++....-.+.+. .+...+. ..+-+..|..+++.-.++. ..+|.+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~--cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~ 178 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG--CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF 178 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc--eEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC
Confidence 45789999999999999999998853 333222222221 1111111 1222333444444333332 3444432
Q ss_pred CCceEE-EEeCCEEEEEECCCcEEEEECCCCceeeeecccc-cc--cCCCCCE-EEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 791 KYPKCL-ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR-KL--LGKANPV-HALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 791 ~~v~~v-~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~--~~h~~~V-~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
+++..- -+....+..++-||.+.-+| ..|+.+..+.... .+ +..+.|- ..+.+-.++-+.+..-.. .--+|.
T Consensus 179 ~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~--ghL~w~ 255 (354)
T KOG4649|consen 179 GPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIA--GHLLWA 255 (354)
T ss_pred CccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEecccc--ceEEEE
Confidence 222211 11112344455566655555 3343332211000 00 0001122 334444444443333222 234677
Q ss_pred CCCCeeEEeecCC---CcEEEEEEc-CCEEEEEECCCeEEEEECCCCcEEEEecccccc---ceeEEE-----E-eC---
Q 002234 866 TSNYNMVGSLPTL---SEVRAMVVS-SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG---KVQCMA-----L-DD--- 929 (949)
Q Consensus 866 ~~~~~~~~~~~~~---~~v~~l~~s-~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~---~I~~l~-----~-sp--- 929 (949)
.++|.....+-.. ......-.| |.++..++.||.+.|.-.... +... ..|.+ .+..+- | ||
T Consensus 256 ~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~-~s~~g~lq~~~~~el~~eIFsSPvii 332 (354)
T KOG4649|consen 256 TQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEI-SSNGGELQNLEAIELSNEIFSSPVII 332 (354)
T ss_pred ecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--cccc-ccCCCccceEEEeecCcccccCCeEE
Confidence 6666433332211 111111112 336777889998888743321 2222 12222 122221 2 22
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 002234 930 NEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 930 dg~~L~sgs~Dg~I~iWdl~ 949 (949)
+| .|+.|+.|..|+-||++
T Consensus 333 ~g-rl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 333 DG-RLLIGCRDDYVRCLDLD 351 (354)
T ss_pred cc-EEEEEEccCeEEEEecc
Confidence 44 57788999999999984
No 344
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0019 Score=73.91 Aligned_cols=193 Identities=12% Similarity=0.023 Sum_probs=115.3
Q ss_pred CceEEEEEeCC--E-EEEEeC---CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEE-EeCC--CcEEEEEC
Q 002234 669 GKVLSIACFRD--K-IFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS-GSLD--KTARVWSI 739 (949)
Q Consensus 669 ~~V~~l~~s~d--~-lasgs~---Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~S-gs~D--g~I~vWd~ 739 (949)
+.+..-.|+|| . ++..+. +..|.++|+.+++.+.+.. ..+.+....|+|||+.++. .+.+ ..|.++|+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 37889999996 3 554443 3568899999985444433 4455667789999987654 3333 46777788
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~ 819 (949)
.+++...+... ...... ..|+|||+.++..+..+ ....|.++|+.+
T Consensus 265 ~~g~~~~LT~~--~~~d~~-------p~~SPDG~~I~F~Sdr~-------------------------g~~~Iy~~dl~~ 310 (419)
T PRK04043 265 NTKTLTQITNY--PGIDVN-------GNFVEDDKRIVFVSDRL-------------------------GYPNIFMKKLNS 310 (419)
T ss_pred CCCcEEEcccC--CCccCc-------cEECCCCCEEEEEECCC-------------------------CCceEEEEECCC
Confidence 88754443322 111111 23999999865433210 113577788887
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--------CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-- 889 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-- 889 (949)
++..... ..+. . ...|+|++.+++..+..+ ..|.+.|+.++.. +.+..........|+||
T Consensus 311 g~~~rlt-----~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~ 380 (419)
T PRK04043 311 GSVEQVV-----FHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGG 380 (419)
T ss_pred CCeEeCc-----cCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCC
Confidence 7764221 1111 1 238999999887776542 3688888887764 33443333345789998
Q ss_pred EEEEEEC-C--CeEEEEECCCC
Q 002234 890 LVYLGCK-G--GTVEIWDQKRQ 908 (949)
Q Consensus 890 ~l~sgs~-d--g~I~vwd~~~~ 908 (949)
.++..+. . ..+.+.+++..
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCC
Confidence 3443332 2 24666777543
No 345
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.17 E-value=0.00075 Score=84.14 Aligned_cols=267 Identities=14% Similarity=0.107 Sum_probs=160.0
Q ss_pred CceEEEEEeCC----EEEEEeCCC--cEEEEecCCCc-eeeeEEec-----ccCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002234 669 GKVLSIACFRD----KIFSGHSDG--TIKVWTGRGSI-LHLIQQIR-----EHTKAVTGLAILQSGEMLYSGSLDKTARV 736 (949)
Q Consensus 669 ~~V~~l~~s~d----~lasgs~Dg--~I~vWd~~t~~-~~~i~~l~-----~H~~~V~~v~fspdg~~L~Sgs~Dg~I~v 736 (949)
..+...+|.+. +++++.... .|.+....... ...+..+. ...+.|.++.|-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35566666652 444444333 34444333221 12333432 34578999999999999999999999999
Q ss_pred E----ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC-CceEEEEe-----CCEEEEE
Q 002234 737 W----SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK-YPKCLALV-----QGKVYCG 806 (949)
Q Consensus 737 W----d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~-~v~~v~~~-----~~~l~sg 806 (949)
. +..+....++... ...|.++. ||||+..+++.+.++++.+....- .+...... .+..++.
T Consensus 102 ~~~~~~~~~~~~E~VG~v--d~GI~a~~-------WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSV--DSGILAAS-------WSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred EEccCCCCCceeEEEEEE--cCcEEEEE-------ECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 9 6666655554444 56677776 999999999999998887664321 12222222 1223333
Q ss_pred ECCCcEEEEECCCCceeee--ecc------cccccCCCCCEEEEEEeCCceEEEEEEC---CC--CEEEEEECCCCeeEE
Q 002234 807 CQDGAIQEIDLATGTFATI--QTG------HRKLLGKANPVHALQVHNGLVYTASTSL---DG--AAVKMWSTSNYNMVG 873 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~--~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~---Dg--~~I~iwd~~~~~~~~ 873 (949)
+....=.-|.-+.|+.... ..+ ...+. +...-..|+|-.||.|+++.+. +| +.+|||+-. |....
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s 250 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS 250 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe
Confidence 3222211111111221000 000 01122 4456678999999999999876 44 789999976 55444
Q ss_pred eec-CCCcEEEEEEcCC--EEEEEEC---CCeEEEEECCCCcEEEEecc---ccccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 874 SLP-TLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQIRIETLQT---GTSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 874 ~~~-~~~~v~~l~~s~d--~l~sgs~---dg~I~vwd~~~~~~~~~l~~---~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
+-. -.+--.+++|.|. +|++.-. ...|.+|..+. -.-..|.- .....|..+.|++|+..|+....|. |+
T Consensus 251 tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vq 328 (928)
T PF04762_consen 251 TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQ 328 (928)
T ss_pred ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ce
Confidence 433 2333457888877 5555432 35677777543 32333321 2345799999999999999987665 99
Q ss_pred EEeC
Q 002234 945 AWGL 948 (949)
Q Consensus 945 iWdl 948 (949)
+|-.
T Consensus 329 LWt~ 332 (928)
T PF04762_consen 329 LWTR 332 (928)
T ss_pred EEEe
Confidence 9964
No 346
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.16 E-value=1.3e-05 Score=80.35 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=93.7
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE------ECCCCEEEEEECCCCe
Q 002234 797 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST------SLDGAAVKMWSTSNYN 870 (949)
Q Consensus 797 ~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~------s~Dg~~I~iwd~~~~~ 870 (949)
...++.++++..||.+.+++.+...... +++..-...-.+.+....+.++.++ ..| ..+.|+++..+
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~-----~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d--~~~a~~~~p~~ 170 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALM-----SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD--NFYANTLDPIK 170 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhh-----hhcccccccccccceeecccEEecCCcceEeecc--ceeeecccccc
Confidence 3344569999999999999977622211 1111111111122222333333332 111 35555554322
Q ss_pred eEE-eecCCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC-CCEEEEEeCCCcEEE
Q 002234 871 MVG-SLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN-EEFLVIGTSDGRIQA 945 (949)
Q Consensus 871 ~~~-~~~~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd-g~~L~sgs~Dg~I~i 945 (949)
... .......|.+++-+|. .+++|+.||.+-+||.+.......+...|+.+|+.+-|+|. +..|+++++||.+--
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 211 1112345888888887 78899999999999999887666665789999999999984 579999999999999
Q ss_pred EeC
Q 002234 946 WGL 948 (949)
Q Consensus 946 Wdl 948 (949)
||-
T Consensus 251 wda 253 (319)
T KOG4714|consen 251 WDA 253 (319)
T ss_pred EcC
Confidence 985
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.0025 Score=74.88 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=78.2
Q ss_pred EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE----------------EECCCCEEEEEE
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS----------------TSLDGAAVKMWS 865 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s----------------~s~Dg~~I~iwd 865 (949)
.+++++.+|.+...|..+|+.+...... ...+..+|+..|+.+ ...+| .+.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G-~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKG-GLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---------ccccccCCceEEEccccccccCcccccCCCCCCCce-EEEEEe
Confidence 4788899999999999999987643211 011223333333321 11233 788889
Q ss_pred CCCCeeEEeecCC---------CcE--EEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC
Q 002234 866 TSNYNMVGSLPTL---------SEV--RAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 866 ~~~~~~~~~~~~~---------~~v--~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
..+++.+.+.... ... ..+....+.+++++.||.++.+|.++|+.+.+++.+..-...=+.+..+|+
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 9999888777633 111 245567789999999999999999999999888643322222233444553
No 348
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=9.1e-07 Score=102.11 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=48.8
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
-.-+.||.|..-++|.|++.|||.||..||+.-.....+.||.|+..+...++.
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 355789999999999999999999999999998887788999999999987773
No 349
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2e-06 Score=94.42 Aligned_cols=77 Identities=19% Similarity=0.426 Sum_probs=62.9
Q ss_pred CCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHHHHC
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQN 86 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~~n~~l~~~i~~~~~~~ 86 (949)
++..+..+|.|-||...+.+||+++|||+||..||.+.++. ...||.||.++.... ...+|+.+..+|.+|+..-
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45677999999999999999999999999999999998885 458999999887422 1124778889999987654
Q ss_pred CC
Q 002234 87 PG 88 (949)
Q Consensus 87 ~~ 88 (949)
..
T Consensus 156 ~~ 157 (398)
T KOG4159|consen 156 SS 157 (398)
T ss_pred hc
Confidence 33
No 350
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.10 E-value=2.5e-06 Score=70.95 Aligned_cols=45 Identities=27% Similarity=0.681 Sum_probs=35.1
Q ss_pred CCCCcccCcCccccccCc------------e-ecCCCccccHHHHHHHHhcCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFDDP------------V-TLETGQTYERRAIQEWIERGNSSCPITR 60 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dP------------v-~~~cghtfc~~ci~~~~~~~~~~CP~c~ 60 (949)
++.++- |+||++.|.+| + ..+|||.|-..||.+|+.... +||.||
T Consensus 16 ~~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 16 DIADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp SSCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred cCcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 344443 99999999444 3 348999999999999998755 999997
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00093 Score=77.75 Aligned_cols=214 Identities=14% Similarity=0.205 Sum_probs=132.1
Q ss_pred ceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCC-EEEEEEecCCCEEEEEeCCCc-----EEEEECCCCe
Q 002234 670 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGSLDKT-----ARVWSIGNEE 743 (949)
Q Consensus 670 ~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~-V~~v~fspdg~~L~Sgs~Dg~-----I~vWd~~~~~ 743 (949)
.|+|++-+...++.|+.||.|.+.+-.- +.++.++.+... |..+....+.++|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6777766667999999999886665432 456888888777 555544445578999888764 8999987631
Q ss_pred ----eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CEEEEEECCCcEEEEEC
Q 002234 744 ----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 744 ----~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~ 817 (949)
+.+...+. +..+ +.+ ....++.+++++. ..+++|-.||.|..+.-
T Consensus 104 ~n~sP~c~~~~r----i~~~----------~np---------------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 104 KNNSPQCLYEHR----IFTI----------KNP---------------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred CCCCcceeeeee----eecc----------CCC---------------CCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 22221110 0000 000 0123445555554 45888999999888742
Q ss_pred C--CCceeeeecccccccCCCCCEEEEEEeCCceE--EEEEECCCCEEEEEECCCCee-EEeec-CCCcEEEEEEcCC-E
Q 002234 818 A--TGTFATIQTGHRKLLGKANPVHALQVHNGLVY--TASTSLDGAAVKMWSTSNYNM-VGSLP-TLSEVRAMVVSSE-L 890 (949)
Q Consensus 818 ~--~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~s~Dg~~I~iwd~~~~~~-~~~~~-~~~~v~~l~~s~d-~ 890 (949)
. ...-... .-......+|+.+.+..++.. ++++. ..|.+|.+....+ ...+. ++...+|..+++. .
T Consensus 155 Di~RDrgsr~----~~~~~~~~pITgL~~~~d~~s~lFv~Tt---~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 155 DILRDRGSRQ----DYSHRGKEPITGLALRSDGKSVLFVATT---EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred cchhccccce----eeeccCCCCceeeEEecCCceeEEEEec---ceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence 1 1111100 111223579999999766554 33332 3899999985442 33344 6778999999877 3
Q ss_pred -EEEEECCCeEEEEECCCCcEEEEecccccccee
Q 002234 891 -VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 923 (949)
Q Consensus 891 -l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~ 923 (949)
+++++ +..+.+||.....+...+..||.....
T Consensus 228 qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 228 QFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred cEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 44444 457999999888888888557764443
No 352
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=4.9e-05 Score=85.47 Aligned_cols=261 Identities=15% Similarity=0.186 Sum_probs=179.5
Q ss_pred cCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC-----hhhHHHHHHhcC----CChHHHHHhhhhH
Q 002234 179 NSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLR----PSTRTLIEMDMME 249 (949)
Q Consensus 179 ~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g-----~~~Aa~~l~~L~----~~~~~~~~~~~~~ 249 (949)
.|.+.++.+.|+.+|.|++- +...++.++-..|++++|+.++... ...|+.+|.+|. |.+.--.....+|
T Consensus 162 ~s~~~~v~eQavWALgNIag-ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAG-DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred cCCcHHHHHHHHHHHhcccc-CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 36889999999999999954 5555666666889999999998665 567999999994 4443333333458
Q ss_pred HHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhh
Q 002234 250 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 329 (949)
Q Consensus 250 ~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~ 329 (949)
.|+.+|...+++-. .+|+-++ .-|. +..++.--.++..|++|.||++|+......+..|...+-+...
T Consensus 241 ~L~~ll~~~D~~Vl------~Da~WAl-syLs-----dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVL------TDACWAL-SYLT-----DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred HHHHHHhcCCHHHH------HHHHHHH-HHHh-----cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 88888887653311 2222221 1111 2234555567777888999999998877777777777777666
Q ss_pred ccCCchhhHhhhcCchhhHHHHH-hcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCcc
Q 002234 330 EDGKCRNSIADKAELAPVMESFM-AASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ 408 (949)
Q Consensus 330 ~~~~~r~~~~~~~~~~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~ 408 (949)
.++.-...+-+.+.++.|..|+. +..+..|..|.=+++++..-+..+ .+.|-+. +.++.|+..|+++.-+-
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q-----iqaVida---~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ-----IQAVIDA---NLIPVLINLLQTAEFDI 380 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH-----HHHHHHc---ccHHHHHHHHhccchHH
Confidence 67777777888999999999887 455556777777888886643322 2333333 56788999999999888
Q ss_pred chhHHHHHHhhhcccCCC--CCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 002234 409 CPVVAGLLLQLDLLAEPR--KMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSL 462 (949)
Q Consensus 409 ~~~~a~~l~~l~~l~~~~--~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l 462 (949)
|-=||.+..++-.-..+. +|. +..+-++++...|...|..- ...+..+|-|+
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yL-v~~giI~plcdlL~~~D~~i-i~v~Ld~l~ni 434 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYL-VEQGIIKPLCDLLTCPDVKI-ILVALDGLENI 434 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHH-HHcCCchhhhhcccCCChHH-HHHHHHHHHHH
Confidence 888999998885544432 222 24456888888886666533 44555666554
No 353
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.01 E-value=3e-06 Score=88.03 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC---CCCccHHHHHHHHHH
Q 002234 13 HTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK---LPKTNYVLKRLIASW 82 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~---~~~~n~~l~~~i~~~ 82 (949)
.++-....|++|..+|.||-++ .|=||||++||-+++.. +..||.|+..+.... -++++..|+.++.+.
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3566778899999999999987 99999999999999998 569999998876553 136778888888776
No 354
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.00 E-value=4.5e-06 Score=93.49 Aligned_cols=73 Identities=21% Similarity=0.425 Sum_probs=60.6
Q ss_pred CCCCcccCcCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCC
Q 002234 14 TPPKDFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~-~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
.+++++.||+|..++.||+. +.|||.||+.|+..|+.. +..||.|+..+.....+.....+++++.+|...-.
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~ 90 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIRCI 90 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccccc
Confidence 47889999999999999999 499999999999999988 67999999998877765224567777777755443
No 355
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.00 E-value=7.6e-05 Score=86.67 Aligned_cols=142 Identities=10% Similarity=0.213 Sum_probs=107.4
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--------CEEEEEECCC
Q 002234 797 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSN 868 (949)
Q Consensus 797 ~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--------~~I~iwd~~~ 868 (949)
..++..+++|...|+|.+-|.++.+.+ ..+..|++.|..+..+. ..++++|... ..|+|||+++
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~i------ht~~aHs~siSDfDv~G--NlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETI------HTFDAHSGSISDFDVQG--NLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCcee------eeeeccccceeeeeccC--CeEEEeecccccccccccchhhhhhhhh
Confidence 333445899999999999999999888 67888999988776654 4555554332 3799999999
Q ss_pred CeeEEeecCCCcEEEEEEcCC---EEEEEECCCeEEEEECC---CCc-EEEEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 869 YNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK---RQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 869 ~~~~~~~~~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~---~~~-~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
.+.+..+.......-+.|.|. .+++.+..|...+-|.. +.. -+..+ ......+..+++|++|+.|+.|..+|
T Consensus 256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccC
Confidence 888777775555566778877 68899999999999943 221 12222 22344599999999999999999999
Q ss_pred cEEEEe
Q 002234 942 RIQAWG 947 (949)
Q Consensus 942 ~I~iWd 947 (949)
.|.+|-
T Consensus 335 ~v~~wa 340 (1118)
T KOG1275|consen 335 HVNLWA 340 (1118)
T ss_pred cEeeec
Confidence 999994
No 356
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.98 E-value=3.8e-06 Score=90.99 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=45.0
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHh----cCCCCCCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE----RGNSSCPITRQKLSSTK 67 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~----~~~~~CP~c~~~~~~~~ 67 (949)
+-..+-.|-+|.+.-+||+..+|.|+|||.||.++.. ..+-+||.|...++...
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 3446778999999999999999999999999988764 23458999998887553
No 357
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=82.68 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=89.7
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCee---EEeec
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNM---VGSLP 876 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~---~~~~~ 876 (949)
+.++.|+.+|.|..+|++.+..-.... ....-|...|+++..-. ++.++.+.+.+| +|++||.+.-++ +.++.
T Consensus 265 nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~g-kikLyD~R~~K~~~~V~qYe 341 (425)
T KOG2695|consen 265 NLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTSLQILQFSQQKLMASDMTG-KIKLYDLRATKCKKSVMQYE 341 (425)
T ss_pred CeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhhhhhhccccceEeeccCcC-ceeEeeehhhhcccceeeee
Confidence 458899999999999999773321111 22345788999999876 888888888897 999999987666 66666
Q ss_pred CCC-c--EEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccc---cceeEEEEe
Q 002234 877 TLS-E--VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS---GKVQCMALD 928 (949)
Q Consensus 877 ~~~-~--v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~---~~I~~l~~s 928 (949)
++. . -.-+-+.+. .+++++.|...+||.++.|+.+.++..... ..+.+++|+
T Consensus 342 GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 342 GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 321 1 111222333 788899999999999999999988853322 246666664
No 358
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.95 E-value=0.00012 Score=85.03 Aligned_cols=184 Identities=15% Similarity=0.225 Sum_probs=128.2
Q ss_pred cccEEEEecCCCCeEEEecCCceee--ecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEE
Q 002234 639 EMVKVLSNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 716 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v 716 (949)
++..++.||....+..+|..+.... ..-..+.|+-++.+...+++|...|+|.+-|.++. +.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeee
Confidence 6778888998888888998753333 22234458888888889999999999999999998 8999999999999875
Q ss_pred EEecCCCEEEEEeC---------CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 717 AILQSGEMLYSGSL---------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 717 ~fspdg~~L~Sgs~---------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
.. .|+.|+|+|. |..|+|||++.-+ .+.... +...+..+.|.|.-.
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI~-------~~~~P~flrf~Psl~-------------- 278 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPIQ-------FPYGPQFLRFHPSLT-------------- 278 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhh--ccCCcc-------cccCchhhhhccccc--------------
Confidence 54 6899999976 5568999998753 111111 011111122333221
Q ss_pred cCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 788 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
..+++.+..|..++-|..+-..... +...+......+..+++++++..++-+..+| .|.+|.
T Consensus 279 -------------t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-~v~~wa 340 (1118)
T KOG1275|consen 279 -------------TRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEG-HVNLWA 340 (1118)
T ss_pred -------------ceEEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccC-cEeeec
Confidence 2478888888888888432211100 0011222345589999999999999999887 999997
No 359
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.0026 Score=71.92 Aligned_cols=86 Identities=21% Similarity=0.400 Sum_probs=67.4
Q ss_pred EEEEECCCCe----eEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEE
Q 002234 861 VKMWSTSNYN----MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 934 (949)
Q Consensus 861 I~iwd~~~~~----~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L 934 (949)
-.+|+...++ .+.+++..+.+.+++++|+ .++.|+.||.|.+||...+..... .+.-..+.++|+|+|.++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEE
Confidence 3455554433 2345567889999999998 899999999999999987743322 233467899999999999
Q ss_pred EEEeCCCcEEEEeCC
Q 002234 935 VIGTSDGRIQAWGLS 949 (949)
Q Consensus 935 ~sgs~Dg~I~iWdl~ 949 (949)
++|+..|.+.+||++
T Consensus 315 ~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 315 VVGSEQGELQCFDMA 329 (545)
T ss_pred EEEcCCceEEEEEee
Confidence 999999999999974
No 360
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.92 E-value=7e-06 Score=77.87 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=46.8
Q ss_pred CcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHH
Q 002234 17 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIA 80 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~ 80 (949)
-.|.|-||.+-++.||++.|||.||..|..+-...+ ..|-+|++.....-. ....+.+|+.
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G~f~--V~~d~~kmL~ 255 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYGRFW--VVSDLQKMLN 255 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcccee--HHhhHHHHHh
Confidence 469999999999999999999999999988866554 489999887654433 3334444443
No 361
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5e-06 Score=84.86 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=44.6
Q ss_pred ccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 19 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 19 ~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
-.|+||++-+.-||.++|+|.||+-||+--...+..+||+||.+++...+.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 359999999999999999999999999995555566899999999977664
No 362
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.91 E-value=0.00022 Score=74.97 Aligned_cols=187 Identities=11% Similarity=0.193 Sum_probs=134.3
Q ss_pred HhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHHh
Q 002234 170 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 245 (949)
Q Consensus 170 ~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~~ 245 (949)
++.++.+|-.+.|+-+++.+..+|.+..... ..+.+.+.-|.++.+..+|... +..|..+|.+|+...+|...|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 5668888998999999999999999985543 2445555778999999999887 667888999999999999988
Q ss_pred hhh-HHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHH
Q 002234 246 DMM-ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 324 (949)
Q Consensus 246 ~~~-~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l 324 (949)
+.. +.+++.+....-+. .-+-|++-+|.+| +..+.+...+ .+.++.++.+|..|+..-|.++..+|
T Consensus 92 k~~i~~Vc~~~~s~~lns-----~~Q~agLrlL~nL------tv~~~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNS-----EVQLAGLRLLTNL------TVTNDYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHcc------CCCcchhhhH--HhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 865 55555444432110 2234566666544 3333333333 34799999999999999999999988
Q ss_pred HHhhhccCCchhhHhhhcCchhhHHHHHhcCCcc-hhHHHHHHHHhhhc
Q 002234 325 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-RFEIVCFLSELVKL 372 (949)
Q Consensus 325 ~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~~l~~l~~~ 372 (949)
+++-+...-.|..+.. ..+++|+.|+.+...+. -..++.++.++...
T Consensus 159 ~nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 159 VNLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8886665555665555 57899999999875554 45667666666443
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0012 Score=75.49 Aligned_cols=257 Identities=11% Similarity=0.088 Sum_probs=148.6
Q ss_pred ceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE---
Q 002234 670 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC--- 746 (949)
Q Consensus 670 ~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~--- 746 (949)
..+|++-+.++++.|+.-|.+++|+-.++. .......+-.+.+.....+++..++|.|+..|.|.++.++.+....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 346666667799999999999999998873 2333344455667777888888899999999999999887754111
Q ss_pred EEe--ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC----------------CCceEEEEeCCEEEEEEC
Q 002234 747 VQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS----------------KYPKCLALVQGKVYCGCQ 808 (949)
Q Consensus 747 ~~~--~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~----------------~~v~~v~~~~~~l~sgs~ 808 (949)
+.. ..|+..|+++. |++++..+.+|...|++.....+ ..|-.+.+.++++++++-
T Consensus 116 ~t~~d~~~~~rVTal~-------Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl 188 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALE-------WSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTL 188 (726)
T ss_pred eccccccCCceEEEEE-------ecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhh
Confidence 111 13567788887 99999999999999988665432 233444444455444433
Q ss_pred CCcEEEEECCCCceeeeecccccccCCCC-CEEEEEEeC-----CceEEEEEECCCCEEEEEECC-CCeeEEeecC----
Q 002234 809 DGAIQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHN-----GLVYTASTSLDGAAVKMWSTS-NYNMVGSLPT---- 877 (949)
Q Consensus 809 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~-----~~~~l~s~s~Dg~~I~iwd~~-~~~~~~~~~~---- 877 (949)
-.. .+++...++..++-. +. ..+ .-...+|-| +...+.++- -| .|+|..+ .|..+++...
T Consensus 189 ~r~-~Lc~tE~eti~QIG~--k~---R~~~~~~GACF~~g~~~~q~~~IycaR-PG--~RlWead~~G~V~~Thqfk~al 259 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGK--KP---RKSLIDFGACFFPGQCKAQKPQIYCAR-PG--LRLWEADFAGEVIKTHQFKDAL 259 (726)
T ss_pred hhh-heeecchhHHHHhcC--CC---cCCccccceEEeeccccCCCceEEEec-CC--CceEEeecceeEEEeeehhhhh
Confidence 222 233333333211100 00 011 112333433 334444443 33 5888764 2333333210
Q ss_pred ----------C-----------------CcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 878 ----------L-----------------SEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 878 ----------~-----------------~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
. +-..+...+.+.+.+-+.-| |+|+|.++.+.+-....+| .|..++. +
T Consensus 260 a~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~--DI~dVs~--~ 334 (726)
T KOG3621|consen 260 ARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGH--DILDVSH--C 334 (726)
T ss_pred ccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeecCCC--ceeEEee--c
Confidence 0 01122222334445544445 8999998877665553233 4666654 4
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 002234 931 EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 931 g~~L~sgs~Dg~I~iWdl 948 (949)
|+-|+.-..||.+++..+
T Consensus 335 ~neiFvL~~d~~l~~~sv 352 (726)
T KOG3621|consen 335 GNEIFVLNLDRGLKVESV 352 (726)
T ss_pred CceEEEEecCCceeEEEe
Confidence 666666677776666543
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00058 Score=78.89 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=114.9
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEE------eCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLAL------VQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 844 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~------~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 844 (949)
.++.++.+..+|.+.+++..+.+...-- .+.++++|+.||+|.+..+-+++....+. ...++.+|++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-------f~rpiksial 120 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-------FKRPIKSIAL 120 (846)
T ss_pred hcceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-------cCCcceeEEe
Confidence 4566777777888888877665422221 24679999999999999998887764332 2468999999
Q ss_pred eCC-----ceEEEEEECCCCEEEEEECC---CCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEecc
Q 002234 845 HNG-----LVYTASTSLDGAAVKMWSTS---NYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 845 ~~~-----~~~l~s~s~Dg~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~ 916 (949)
+|+ ...+++|+.-| +.++.-+ +...+..-...++|.++.|..++++-++.+| |+|||+.+++.+..++.
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred ccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCC
Confidence 998 45677776553 6666533 1222212225789999999999999999887 89999999998888865
Q ss_pred cccc-----ceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 917 GTSG-----KVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 917 ~h~~-----~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+.. .-..+.|.++.+ |+.| ..-+|+|..+
T Consensus 198 p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I 232 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSI 232 (846)
T ss_pred CCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEE
Confidence 5532 234577876554 4444 4446776654
No 365
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0035 Score=73.22 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=136.0
Q ss_pred ccccccccEEEEecCCCCeEEEecCC-ceeeecCCCCc-eEEEEEeCC--EEEEEeCCCc-----EEEEecCCC---c-e
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGK-VLSIACFRD--KIFSGHSDGT-----IKVWTGRGS---I-L 700 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~-V~~l~~s~d--~lasgs~Dg~-----I~vWd~~t~---~-~ 700 (949)
+-+++.+..++.|+.+|.|.+.+-.- ..+-+..+... |..+-...+ +|++-+.|+. ++|||++.- . .
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 34455677899999999988877663 33666667666 444444443 8888887764 899998632 1 2
Q ss_pred eeeE--Eecc-----cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CeeEEEEeecCCCceeeeeeccceEEEEe
Q 002234 701 HLIQ--QIRE-----HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---EEIHCVQVHDIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 701 ~~i~--~l~~-----H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~fsp 770 (949)
.++. .+.+ ...++.+++.+.+-+.+|.|-.||.|..+.-+- ...+....+..+++|+++. +..
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~-------~~~ 181 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA-------LRS 181 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE-------Eec
Confidence 4441 2222 355789999999999999999999998885321 1123334445566777766 555
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 850 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 850 (949)
+++.+ ++ ...-..|.+|.+....... .....|+.+++|..+++...-
T Consensus 182 d~~s~---------------------------lF-v~Tt~~V~~y~l~gr~p~~-----~~ld~~G~~lnCss~~~~t~q 228 (933)
T KOG2114|consen 182 DGKSV---------------------------LF-VATTEQVMLYSLSGRTPSL-----KVLDNNGISLNCSSFSDGTYQ 228 (933)
T ss_pred CCcee---------------------------EE-EEecceeEEEEecCCCcce-----eeeccCCccceeeecCCCCcc
Confidence 55431 22 2233567888887443111 335667889999999877764
Q ss_pred EEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC
Q 002234 851 TASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 889 (949)
Q Consensus 851 l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d 889 (949)
+++++. ..+.+||.....+...+.-+..-.-..++.+
T Consensus 229 fIca~~--e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g 265 (933)
T KOG2114|consen 229 FICAGS--EFLYFYDSDGRGPCFAFEVGEKKEMLVFSFG 265 (933)
T ss_pred EEEecC--ceEEEEcCCCcceeeeecCCCeEEEEEEecC
Confidence 555543 3799999987777777763333333333433
No 366
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.82 E-value=0.005 Score=63.55 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=127.2
Q ss_pred ccccccEEEEecCCCCeEEEecC----Cc---eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHR----EL---VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~----~~---~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
++.+|+.||. -.|..|.+=..+ +. .++.....-.=..++|||| .||.+...|+|+++|+.+.. +..+
T Consensus 5 ~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~---lf~I 80 (282)
T PF15492_consen 5 LSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE---LFVI 80 (282)
T ss_pred ecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce---eEEc
Confidence 3455665544 345555554333 22 2333444555688999998 89999999999999998652 2222
Q ss_pred cc-------cCCCEEEEEEecCC------CEEEEEeCCCcEEEEECCCC--e----eEEEEeec-CCCceeeeeeccceE
Q 002234 707 RE-------HTKAVTGLAILQSG------EMLYSGSLDKTARVWSIGNE--E----IHCVQVHD-IKDQIQNLAVSNSIL 766 (949)
Q Consensus 707 ~~-------H~~~V~~v~fspdg------~~L~Sgs~Dg~I~vWd~~~~--~----~~~~~~~~-~~~~v~~l~~~~~~~ 766 (949)
.. -..+|..+.|.+.. ..|+.-..+|.++-+-+..+ + ...+.... ....|.++.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v------ 154 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV------ 154 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE------
Confidence 21 23567778786531 25666777888877765332 1 12222211 244555554
Q ss_pred EEEeCCCEEEEEEecCeEEEec--CCCCceEEEEeCC----EEEEEECCCcE------EEEECCCCceeeeecccccccC
Q 002234 767 CFIPQGAGIKVHLRNGKTKLLN--SSKYPKCLALVQG----KVYCGCQDGAI------QEIDLATGTFATIQTGHRKLLG 834 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g~i~~~~--~~~~v~~v~~~~~----~l~sgs~Dg~I------~iwd~~~~~~~~~~~~~~~~~~ 834 (949)
+.|.-+.+.+++....-.-.. ....+++..+-++ +.++...|+.. .+|.+-+.... .....
T Consensus 155 -y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f------s~~~~ 227 (282)
T PF15492_consen 155 -YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF------SRQGQ 227 (282)
T ss_pred -EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee------ecccc
Confidence 888888877776553311000 1123333333221 13333333321 22222221111 01122
Q ss_pred CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 835 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 835 h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
....|..|..+||+..+++.+.+| .|.+|++.+-+..+.+.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG-~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSG-SLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCC-eEEEEecCcchhhcccc
Confidence 346899999999999999999997 99999999877776665
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0028 Score=72.51 Aligned_cols=273 Identities=10% Similarity=0.076 Sum_probs=147.7
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCCc---eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeE
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL---VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 704 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~---~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~ 704 (949)
.+.+..+.....+++.|+.-|.+.+|+-... .....+-.+.+.....|++ ++|.|+..|.|.|+-+..+......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 4456667778899999999999999987632 2223334555666666764 8888999999999988764211111
Q ss_pred Ee----cccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEEEeecCCCceeeeeeccceEEEEeCCCEEEE
Q 002234 705 QI----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 777 (949)
Q Consensus 705 ~l----~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~ 777 (949)
.+ +.|...|++++|++|+..+++|...|+|..-.++... ..........+.|-.+.......-.+.--+.+..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc 194 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILC 194 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhhee
Confidence 11 2478899999999999999999999999988877721 1122222334455554433332222222233333
Q ss_pred EEecCeEEEecC--CCC--ceEEEEeCC-------EEEEEECCCcEEEEECCC-Cceeeeec-------cccccc-----
Q 002234 778 HLRNGKTKLLNS--SKY--PKCLALVQG-------KVYCGCQDGAIQEIDLAT-GTFATIQT-------GHRKLL----- 833 (949)
Q Consensus 778 ~~~~g~i~~~~~--~~~--v~~v~~~~~-------~l~sgs~Dg~I~iwd~~~-~~~~~~~~-------~~~~~~----- 833 (949)
....++++-... .+. -....|-++ .|+++--. .++|...- |..+.+.. +...+.
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~ 272 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSL 272 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEeeehhhhhccCCCCcccCCCc
Confidence 332233222111 111 122223222 24444333 35565432 22222110 000000
Q ss_pred -----------CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEE
Q 002234 834 -----------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEI 902 (949)
Q Consensus 834 -----------~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~v 902 (949)
.|.-....+.+-.++ .+.+.+.- -|+|+|.++...+--......|..++.+.+-|++-..||.+++
T Consensus 273 esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~--Giyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~l~~ 349 (726)
T KOG3621|consen 273 ESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEV--GIYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRGLKV 349 (726)
T ss_pred CCccccCCCCCccccccceeEEeecc-eEEEeecc--eEEEEEeccceEEEeecCCCceeEEeecCceEEEEecCCceeE
Confidence 011111122222222 23333333 4888888776666555566777777777776666566666666
Q ss_pred EECCC
Q 002234 903 WDQKR 907 (949)
Q Consensus 903 wd~~~ 907 (949)
..+.+
T Consensus 350 ~sv~s 354 (726)
T KOG3621|consen 350 ESVAS 354 (726)
T ss_pred EEeeh
Confidence 66544
No 368
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00015 Score=78.03 Aligned_cols=227 Identities=12% Similarity=0.068 Sum_probs=151.4
Q ss_pred ccEEEEecCCCCeEEEecCC-----ceeeecCCCCceEEEEEeCC--EEEEEeC-CCcEEEEecCCCceeeeEEecccCC
Q 002234 640 MVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~~s~d--~lasgs~-Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
..++.+++.||.++.|.... .+..+..|.+.|.+++.+-+ .+.|.+. |..++++|+.+-...-...+.--.+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 45788999999999998763 34456678888998888877 7778777 9999999998652111222222233
Q ss_pred CEEEEEEec-CCC-EE-EEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 712 AVTGLAILQ-SGE-ML-YSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 712 ~V~~v~fsp-dg~-~L-~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
.+..+ .++ |.. .+ ++.-.+|.+.++|-..+. .......-|..+|..+. +++.+..+.+....|-+..|
T Consensus 100 ~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~-------y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 100 FAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR-------YNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred ceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE-------eeccccceeeccccceeEee
Confidence 33222 122 111 23 333457899999976653 23333345677888877 67777777777666777777
Q ss_pred cCC---------------------------CCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeeccc---------
Q 002234 788 NSS---------------------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGH--------- 829 (949)
Q Consensus 788 ~~~---------------------------~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--------- 829 (949)
... ....++.+++ ..+.+-..|..|++++.++|+.++.+...
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k 251 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK 251 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence 532 2456677765 45777789999999999999876544211
Q ss_pred -----------------ccccCCC-CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 830 -----------------RKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 830 -----------------~~~~~h~-~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
+.+..|. ..-+.+.|+..+.++.-++.=| |++.++.++.+++.+.
T Consensus 252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IKVINLDTNTVVRILG 314 (558)
T ss_pred cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EEEEEeecCeEEEEec
Confidence 1112222 2345677888999999887765 9999999988877664
No 369
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.3e-05 Score=78.97 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=44.8
Q ss_pred CCCCCCCCCCcccCcCccccccCceec-CCCccccHHHHHHHHhc-CCCCCCCCCCCCC
Q 002234 8 PGIGKHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPITRQKLS 64 (949)
Q Consensus 8 ~~~~~~~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~-~~~~CP~c~~~~~ 64 (949)
|......-..+-.||+|++.-..|.+. +|||.||+.||..-..- ...+||.|+....
T Consensus 229 p~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 229 PKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 443444556788999999999999988 69999999999984432 2458999987765
No 370
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.5e-05 Score=81.32 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=48.9
Q ss_pred CcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 002234 17 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 83 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~ 83 (949)
-.|.|-||.+.|.+||++.|||+||..|-...+..+. .|++|.+......- +...|..++..-+
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~g~~~--~akeL~~~L~~kk 303 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTHGSFN--VAKELLVSLKLKK 303 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCC-cceecccccccccc--hHHHHHHHHHhhh
Confidence 3578999999999999999999999999988777644 89999887764332 4444544444433
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.71 E-value=0.015 Score=62.63 Aligned_cols=223 Identities=14% Similarity=0.198 Sum_probs=132.2
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCeeEEEEeecCCCcee
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs----------~Dg~I~vWd~~~~~~~~~~~~~~~~~v~ 757 (949)
+.+.|.|.+++ +.+..+.. +..-.+..+|||+.+++++ ..-.|.+||..+-....-.....+....
T Consensus 17 ~rv~viD~d~~--k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSG--KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTT--EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCC--cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 47999999998 56655542 2334467899999888753 2346899999997544333333221222
Q ss_pred eeeeccceEEEEeCCCEEEEEEecC--eEEEecCCCC--c------eEEE---EeCCEEEEEECCCcEEEEECC-CCcee
Q 002234 758 NLAVSNSILCFIPQGAGIKVHLRNG--KTKLLNSSKY--P------KCLA---LVQGKVYCGCQDGAIQEIDLA-TGTFA 823 (949)
Q Consensus 758 ~l~~~~~~~~fsp~g~~l~~~~~~g--~i~~~~~~~~--v------~~v~---~~~~~l~sgs~Dg~I~iwd~~-~~~~~ 823 (949)
.+ .......++.||+++.+..... .+.+.|.... + -|.. ..+..+.+-|.||++....+. .|+..
T Consensus 93 ~~-~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 93 VV-PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ec-ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 22 2445567999999999888773 4556664321 1 1222 224668899999999988887 44433
Q ss_pred eeec----c----------------cccccCCCCCEEEEEEeCCc----------------------------------e
Q 002234 824 TIQT----G----------------HRKLLGKANPVHALQVHNGL----------------------------------V 849 (949)
Q Consensus 824 ~~~~----~----------------~~~~~~h~~~V~~l~~~~~~----------------------------------~ 849 (949)
.... . ..-+....+.|+.+.++.+. .
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 1110 0 00011222334443333221 1
Q ss_pred EEEEEE--CCC------CEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEE-ECCCeEEEEECCCCcEEEEec
Q 002234 850 YTASTS--LDG------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLG-CKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 850 ~l~s~s--~Dg------~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sg-s~dg~I~vwd~~~~~~~~~l~ 915 (949)
+.+.-. .+| ..|-++|+.+++.+..++-..++.++.++.| .|++. ..++.+.|||..+|+.++++.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 111111 011 3788889999999999886667889999987 56554 457999999999999999885
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.70 E-value=0.021 Score=67.07 Aligned_cols=264 Identities=15% Similarity=0.190 Sum_probs=142.9
Q ss_pred EeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCC------CEE--EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002234 676 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK------AVT--GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 747 (949)
Q Consensus 676 ~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~------~V~--~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~ 747 (949)
+..+.++.++.+|.+.-.|..++ +.+..+..... .+. .+.+. ++..++.++.||.|.-+|.++|+..-.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 34567888888999999999999 56655543222 111 11111 226788888999999999999963322
Q ss_pred EeecCCC-c---ee-eeeeccceEEEEe----------CCCEEEEEEecCeEEEecCCC---------------------
Q 002234 748 QVHDIKD-Q---IQ-NLAVSNSILCFIP----------QGAGIKVHLRNGKTKLLNSSK--------------------- 791 (949)
Q Consensus 748 ~~~~~~~-~---v~-~l~~~~~~~~fsp----------~g~~l~~~~~~g~i~~~~~~~--------------------- 791 (949)
....... . +. ...+....+.+.. +|...+.-..+|. .+|....
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc-eeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 2111110 0 11 1111111111110 1111111111222 2332110
Q ss_pred --Cc-eEEEEe--CCEEEEEECCC------------------cEEEEECCCCceeeeeccccc----ccCCCCCEE-EEE
Q 002234 792 --YP-KCLALV--QGKVYCGCQDG------------------AIQEIDLATGTFATIQTGHRK----LLGKANPVH-ALQ 843 (949)
Q Consensus 792 --~v-~~v~~~--~~~l~sgs~Dg------------------~I~iwd~~~~~~~~~~~~~~~----~~~h~~~V~-~l~ 843 (949)
.+ ....+. .+.++.++.++ .|.-+|..+|+....+..... +.+...++. .+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 01 012332 46788888765 799999999998866432110 011111111 111
Q ss_pred -EeCCc-eEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEE------------------CCCeEEEE
Q 002234 844 -VHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGC------------------KGGTVEIW 903 (949)
Q Consensus 844 -~~~~~-~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs------------------~dg~I~vw 903 (949)
.+.+. .+++.++.+| .+...|..+|+.+...... ...++.+|+.++.++ .+|.+.-.
T Consensus 295 ~~~g~~~~~V~~g~~~G-~l~ald~~tG~~~W~~~~~--~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 295 PKDGKPVPAIVHAPKNG-FFYVLDRTTGKLISARPEV--EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred ccCCCeeEEEEEECCCc-eEEEEECCCCcEeeEeEee--ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 11111 2455555666 8999999999998876522 122445556555532 36789999
Q ss_pred ECCCCcEEEEecccc-c------cce--eEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 904 DQKRQIRIETLQTGT-S------GKV--QCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 904 d~~~~~~~~~l~~~h-~------~~I--~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
|..+|+.+.+...+. . ... ..+. ..+..++.++.||.|+.+|.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEEC
Confidence 999999887775331 0 111 1222 24678888999999988875
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.70 E-value=0.0092 Score=72.39 Aligned_cols=230 Identities=13% Similarity=0.117 Sum_probs=125.2
Q ss_pred CCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC----CC
Q 002234 668 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI----GN 741 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~----~~ 741 (949)
.+.|.++.|..+ .++.+..+|.|.+-|..+..+..+. .-.+.|.+++|+||++.++-.+.++++.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 468999999875 8888889999999999887443333 34678999999999999999999888865432 11
Q ss_pred CeeEEE-EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE---ecCCCCceEEEEeC-C-EEEE----EECC-C
Q 002234 742 EEIHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL---LNSSKYPKCLALVQ-G-KVYC----GCQD-G 810 (949)
Q Consensus 742 ~~~~~~-~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~---~~~~~~v~~v~~~~-~-~l~s----gs~D-g 810 (949)
.+ .+ ......+..-.+.|......|.-.+-..+....-...+. ......-.++.|-+ | ++++ .-.+ .
T Consensus 145 E~--~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EK--PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cc--ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 11 11 000011111222211111112211100000000000000 00111222344432 2 2333 2334 7
Q ss_pred cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC--CCEEEEEECCC---CeeEEeec-CCCcEEEE
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSN---YNMVGSLP-TLSEVRAM 884 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--g~~I~iwd~~~---~~~~~~~~-~~~~v~~l 884 (949)
.|++||-. |..... -....+-=.+++|-|.|..+++...+ +..|.+|.-+. |...-.++ ....+..+
T Consensus 223 kirV~drE-g~Lns~------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNST------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred eEEEeccc-chhhcc------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 99999977 544321 11122344578999999888876432 23788887532 33333333 23449999
Q ss_pred EEcCC--EEEE---EECCCeEEEEECCCCc
Q 002234 885 VVSSE--LVYL---GCKGGTVEIWDQKRQI 909 (949)
Q Consensus 885 ~~s~d--~l~s---gs~dg~I~vwd~~~~~ 909 (949)
+|+.+ .+++ ......|++|-+.+..
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeE
Confidence 99877 4444 3444559999987643
No 374
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0013 Score=75.90 Aligned_cols=279 Identities=14% Similarity=0.175 Sum_probs=148.7
Q ss_pred CCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEE
Q 002234 649 DSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY 726 (949)
Q Consensus 649 dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~ 726 (949)
.|+|.||--..-.+....-.-.+++++|+|. .|++|-.-|.+.+|...+. +.-.....|+.+|..+.||++|..++
T Consensus 40 ~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l~ 117 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVLM 117 (1416)
T ss_pred CceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeEE
Confidence 4778777433111111122234577999997 8889999999999999887 44444567999999999999999999
Q ss_pred EEeCCCcEEEEECCC-CeeEEEEe--ecCCCceeeeeeccceEEEEeCCCE------EEEEEecCeE---EEecCCCCce
Q 002234 727 SGSLDKTARVWSIGN-EEIHCVQV--HDIKDQIQNLAVSNSILCFIPQGAG------IKVHLRNGKT---KLLNSSKYPK 794 (949)
Q Consensus 727 Sgs~Dg~I~vWd~~~-~~~~~~~~--~~~~~~v~~l~~~~~~~~fsp~g~~------l~~~~~~g~i---~~~~~~~~v~ 794 (949)
|+..-|.|.+|.... |+.+.... ++.++.+.-.. ...++++.. .++.+.+..+ .-|.....-.
T Consensus 118 t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~c-----fRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~r 192 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWC-----FRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAER 192 (1416)
T ss_pred EcCCCceeEEEEeeeccccccchhhhhHhhceeeEEE-----EecCCChHHhhhhhhhhccCchhhhcccccCccchhhc
Confidence 999999999998763 22222222 22222222221 012333221 1222222111 1222222222
Q ss_pred EEEEe---CC-EEEEEECCCcEEEEECCCCceeeeecccc----cccCCCCCEEEEEE-eCCceEEEEE-----------
Q 002234 795 CLALV---QG-KVYCGCQDGAIQEIDLATGTFATIQTGHR----KLLGKANPVHALQV-HNGLVYTAST----------- 854 (949)
Q Consensus 795 ~v~~~---~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~V~~l~~-~~~~~~l~s~----------- 854 (949)
++.-+ .| .++.++.+|+|+..|-. |.+..+..... -+.+....|..+.- ..+..+++-.
T Consensus 193 s~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk 271 (1416)
T KOG3617|consen 193 SDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVK 271 (1416)
T ss_pred cccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhh
Confidence 22222 23 37888899999988844 33332221111 11222233333322 1222222211
Q ss_pred ------ECCCCEEEEEECCCC----eeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC-------cEEEEec
Q 002234 855 ------SLDGAAVKMWSTSNY----NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ-------IRIETLQ 915 (949)
Q Consensus 855 ------s~Dg~~I~iwd~~~~----~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~-------~~~~~l~ 915 (949)
+..| .|-+=.. .| .....+..+..++|++++.. .++.|...|.+.+|--... .-..++.
T Consensus 272 ~sgk~GgrqG-giA~sEs-sGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~ 349 (1416)
T KOG3617|consen 272 VSGKLGGRQG-GIACSES-SGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLN 349 (1416)
T ss_pred hccccCCccC-ccccccc-cccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEec
Confidence 0011 1111000 01 01111224678999999877 7888999999999964221 2233332
Q ss_pred c--ccccceeEEEEeCCCCEEEEE
Q 002234 916 T--GTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 916 ~--~h~~~I~~l~~spdg~~L~sg 937 (949)
. ...+.|+.+.|.|--+.++.-
T Consensus 350 ~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 350 GKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred CchhhccceEEEEeccccchhhhh
Confidence 1 234579999998865544433
No 375
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=3.5e-05 Score=88.64 Aligned_cols=193 Identities=11% Similarity=0.140 Sum_probs=128.6
Q ss_pred eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 700 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
++..+++..|+...+|++|+-+.++|+.|+..|.|+++++.+|. ..-....|..+++.+. -+.+|...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~ve-------Ps~dgs~~---- 1158 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVE-------PSVDGSTQ---- 1158 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-cccccccccccccccc-------ccCCccee----
Confidence 35667788899999999999999999999999999999999985 3333445677777766 55566542
Q ss_pred ecCeEEEecCCCCceEEEEeCCEEEEEEC-CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC
Q 002234 780 RNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 858 (949)
Q Consensus 780 ~~g~i~~~~~~~~v~~v~~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg 858 (949)
+.+++. ..-..+|++.+--.. ...+ ..-.++.|++...+-+.+...+
T Consensus 1159 -----------------------Ltsss~S~PlsaLW~~~s~~~~-----~Hsf----~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1159 -----------------------LTSSSSSSPLSALWDASSTGGP-----RHSF----DEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred -----------------------eeeccccCchHHHhccccccCc-----cccc----cccceeehhhhHHHHHhccccc
Confidence 222222 225678887652111 0122 2345788876655544444333
Q ss_pred CEEEEEECCCCeeEEeec-C----CCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC
Q 002234 859 AAVKMWSTSNYNMVGSLP-T----LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 859 ~~I~iwd~~~~~~~~~~~-~----~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
...+||+.++.+..++- . ...-++..|+|+ .++. .|| .+||++..+.++.|. .-+..+. -.|+|.|.
T Consensus 1207 -~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD-~ft~~~~-G~FHP~g~ 1279 (1516)
T KOG1832|consen 1207 -DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFD-QFTDYGG-GGFHPSGN 1279 (1516)
T ss_pred -ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhh-hheeccc-ccccCCCc
Confidence 79999999998877743 1 233467889997 4433 244 479999988888874 2232333 34999998
Q ss_pred EEEEEeCCCcEEEEeC
Q 002234 933 FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 933 ~L~sgs~Dg~I~iWdl 948 (949)
-++.-+ .|||+
T Consensus 1280 eVIINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1280 EVIINS-----EIWDM 1290 (1516)
T ss_pred eEEeec-----hhhhh
Confidence 888766 36765
No 376
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.65 E-value=0.021 Score=60.76 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=122.7
Q ss_pred cccEEEEecCCCC-eEEEecCC--ceeeecCCCCceE--EEEEeCC--EEEEE-----eCCCcEEEEecCCCceeeeEEe
Q 002234 639 EMVKVLSNGHDSS-ADFWNHRE--LVHVDSSENGKVL--SIACFRD--KIFSG-----HSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 639 ~~~~l~s~s~dg~-I~vWd~~~--~~~~~~~h~~~V~--~l~~s~d--~lasg-----s~Dg~I~vWd~~t~~~~~i~~l 706 (949)
.+..++.+-.-|+ ..+||..+ ....+....+.-. .-.||+| +|++. +..|.|-|||... .++.+.++
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~ 94 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEF 94 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEe
Confidence 3445555555543 34666652 2222222222111 2578886 66654 3468999999993 34788899
Q ss_pred cccCCCEEEEEEecCCCEEEEEeC-------CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEE-EeCCCEEEEE
Q 002234 707 REHTKAVTGLAILQSGEMLYSGSL-------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF-IPQGAGIKVH 778 (949)
Q Consensus 707 ~~H~~~V~~v~fspdg~~L~Sgs~-------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~f-sp~g~~l~~~ 778 (949)
..|.-.-..+.+.|||+.|+.+-. .|..++ ++.+.+ ++.... ..+|..+
T Consensus 95 ~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~-------------------psL~~ld~~sG~ll--- 151 (305)
T PF07433_consen 95 PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQ-------------------PSLVYLDARSGALL--- 151 (305)
T ss_pred cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcC-------------------CceEEEecCCCcee---
Confidence 888777788999999987776632 111111 111111 011111 1122211
Q ss_pred EecCeEEE--ecCCCCceEEEEeC-CEEEEEECC-C-------cEEEEECCCCceeeeec-ccccccCCCCCEEEEEEeC
Q 002234 779 LRNGKTKL--LNSSKYPKCLALVQ-GKVYCGCQD-G-------AIQEIDLATGTFATIQT-GHRKLLGKANPVHALQVHN 846 (949)
Q Consensus 779 ~~~g~i~~--~~~~~~v~~v~~~~-~~l~sgs~D-g-------~I~iwd~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~ 846 (949)
.+..+ -++...++.+++.+ +.++.|... | .+-+++.. .....+. +......-.+.+-+|++++
T Consensus 152 ---~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 152 ---EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred ---eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeC
Confidence 01111 01233344444443 233333221 0 12222221 1111111 0112233456799999999
Q ss_pred CceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEE
Q 002234 847 GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVE 901 (949)
Q Consensus 847 ~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~ 901 (949)
++.+++.+++-|+.+.+||..++..+....- ..+..++..++.++..+..|.+.
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~f~~ssG~G~~~ 280 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDGFLVSSGQGQLI 280 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCceEEeCCCccEE
Confidence 9999999999999999999999998876552 33556666666444444455443
No 377
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0019 Score=68.97 Aligned_cols=241 Identities=16% Similarity=0.080 Sum_probs=128.0
Q ss_pred EEEEecCCCceeeeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEE
Q 002234 690 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 768 (949)
Q Consensus 690 I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~f 768 (949)
|++.+..+- +....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++. .+.........+++.. |
T Consensus 175 v~~l~~~~f--kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~~~~wSC~-------w 243 (463)
T KOG1645|consen 175 VQKLESHDF--KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAYNQIWSCC-------W 243 (463)
T ss_pred eEEeccCCc--chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheeccCCceeee-------e
Confidence 555555554 55667788999999999999766 7889999999999999996 4444444456677665 6
Q ss_pred EeCCC-EEEEEEecCeEEEecCCC---------------CceEEEEeC-------CEEEEEECCCcEEEEECCCCceeee
Q 002234 769 IPQGA-GIKVHLRNGKTKLLNSSK---------------YPKCLALVQ-------GKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 769 sp~g~-~l~~~~~~g~i~~~~~~~---------------~v~~v~~~~-------~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
.-|.. .+..|..+|.+.++|... +|..++.-+ +.++++..- ....|++.-......
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLP 322 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCC
Confidence 55544 555666677777777421 222222211 112222211 123344332111000
Q ss_pred ecccccccCCCCCEEEEEEeCC-ceEEEEEECCCC-----EEEE-EECCCCeeEEeec--C-CCc------EEEEEEcCC
Q 002234 826 QTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGA-----AVKM-WSTSNYNMVGSLP--T-LSE------VRAMVVSSE 889 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~Dg~-----~I~i-wd~~~~~~~~~~~--~-~~~------v~~l~~s~d 889 (949)
. ..-.+..+...+++.++- ...+++.-++-+ .|-. -|-.+|.++.... + ++. -..+.-.++
T Consensus 323 ~---vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~ 399 (463)
T KOG1645|consen 323 C---VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVED 399 (463)
T ss_pred c---ccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccc
Confidence 0 000111234445555542 223333332110 0101 1112232222111 1 000 001111222
Q ss_pred ---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeC-C-CCEEEEEeCCCcEEEEeC
Q 002234 890 ---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-N-EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 ---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp-d-g~~L~sgs~Dg~I~iWdl 948 (949)
.+..|...+.+.+||..+++.++++. -+.+|..++... + +.+|++-+ |..++||..
T Consensus 400 nn~iv~~gd~tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~ 460 (463)
T KOG1645|consen 400 NNYIVVVGDSTNELILQDPHSFEVVQTLA--LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKN 460 (463)
T ss_pred ccEEEEecCCcceeEEeccchhheeeecc--cCcceeecceeecCCcchhhhee-cceEEEEec
Confidence 34456677899999999999999995 346788887643 2 34666555 557888753
No 378
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.00082 Score=70.14 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=64.7
Q ss_pred hhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchh--HHHHHHHHhhh
Q 002234 294 NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERF--EIVCFLSELVK 371 (949)
Q Consensus 294 ~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~~l~~l~~ 371 (949)
+-++..|++|.++.+|-+++.+.|++|+.+|-+..-....||.++.+.|+++|++.||.+.....+. ++.=.|++|-+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 3467789999999999999999999999999999899999999999999999999999866543222 34445666644
No 379
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.4e-05 Score=91.01 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=43.0
Q ss_pred CCCcccCcCccccccC-----ceecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDD-----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~d-----Pv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
...+-.|+||.+.|.. |-.++|||.|+..|+..|+++ ..+||.||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 3457899999999999 788999999999999999999 459999998443
No 380
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.51 E-value=9.2e-05 Score=61.85 Aligned_cols=52 Identities=27% Similarity=0.590 Sum_probs=38.2
Q ss_pred CCCCcccCcCcccccc-----------C-ceec-CCCccccHHHHHHHHhc--CCCCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFD-----------D-PVTL-ETGQTYERRAIQEWIER--GNSSCPITRQKLSS 65 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~-----------d-Pv~~-~cghtfc~~ci~~~~~~--~~~~CP~c~~~~~~ 65 (949)
++++|-.|+||+..|. | |++. .|||.|=..||.+|++. .+..||.||++...
T Consensus 17 d~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 17 DVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3444555555555554 4 6665 99999999999999985 35689999998653
No 381
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.47 E-value=0.085 Score=59.57 Aligned_cols=207 Identities=10% Similarity=0.112 Sum_probs=102.8
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee-c------CCCceeeeeeccceEEEEeCCC
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-D------IKDQIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~-~------~~~~v~~l~~~~~~~~fsp~g~ 773 (949)
.+..-+....++|++++.| |=-+++.|..+|++.|.|++.......... + ....+.++.|.. +...+
T Consensus 77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v----m~~~~- 150 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV----MTLGG- 150 (395)
T ss_dssp EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE----EE-TT-
T ss_pred CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE----EecCC-
Confidence 4555556668999999997 445899999999999999988753222111 1 112233333110 00111
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC--C-CceeeeecccccccCCCCCEEEEEE-eCC--
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--T-GTFATIQTGHRKLLGKANPVHALQV-HNG-- 847 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~--~-~~~~~~~~~~~~~~~h~~~V~~l~~-~~~-- 847 (949)
|+... -.+++|+..|.+.+|.+- . +.....+. .....+.++|..+.. +.+
T Consensus 151 -------D~ySS---------------i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~--~~~~~~~~~i~~I~~i~~~~G 206 (395)
T PF08596_consen 151 -------DGYSS---------------ICLLVGTNSGNVLTFKILPSSNGRFSVQFA--GATTNHDSPILSIIPINADTG 206 (395)
T ss_dssp -------SSSEE---------------EEEEEEETTSEEEEEEEEE-GGG-EEEEEE--EEE--SS----EEEEEETTT-
T ss_pred -------Ccccc---------------eEEEEEeCCCCEEEEEEecCCCCceEEEEe--eccccCCCceEEEEEEECCCC
Confidence 11100 137788888888888664 1 21211111 111234455555553 211
Q ss_pred -------------------ceEEEEEECCCCEEEEEECCCCeeEEeecCC-CcEEEEEEc-------CCEEEEEECCCeE
Q 002234 848 -------------------LVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-SEVRAMVVS-------SELVYLGCKGGTV 900 (949)
Q Consensus 848 -------------------~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s-------~d~l~sgs~dg~I 900 (949)
..+++.++. +.++++...+.+........ .....+.+- ...|++-..+|.|
T Consensus 207 ~~a~At~~~~~~l~~g~~i~g~vVvvSe--~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 207 ESALATISAMQGLSKGISIPGYVVVVSE--SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -B-B-BHHHHHGGGGT----EEEEEE-S--SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred CcccCchhHhhccccCCCcCcEEEEEcc--cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcE
Confidence 124444443 47999999887766554422 222333342 1167888899999
Q ss_pred EEEECCCCcEEEEeccc---cccceeEEEEeCCCCEEEEEeC
Q 002234 901 EIWDQKRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 901 ~vwd~~~~~~~~~l~~~---h~~~I~~l~~spdg~~L~sgs~ 939 (949)
++|.+..-+.+..+... +...+....++++|+.++-.+.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 99999998888777532 2235677888999997766654
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.46 E-value=0.036 Score=62.30 Aligned_cols=271 Identities=11% Similarity=0.054 Sum_probs=127.6
Q ss_pred CCCeEEEecCCceee-ecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEeccc----------------
Q 002234 649 DSSADFWNHRELVHV-DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH---------------- 709 (949)
Q Consensus 649 dg~I~vWd~~~~~~~-~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H---------------- 709 (949)
.+.+.+||+.+.... +......+....|||+ .++-. .++.|.+++..++....+ +..|-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe-ccccceeEEcCccceeccccc
Confidence 456778888753322 2222578899999997 44444 467899999887732222 22220
Q ss_pred CCCEEEEEEecCCCEEEEEeCC-CcEEEEEC---CCC-----eeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 710 TKAVTGLAILQSGEMLYSGSLD-KTARVWSI---GNE-----EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~D-g~I~vWd~---~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
-+.-..+-|||||++|+....| ..|+.+.+ ... +.....-....++...+. ..++...
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~-------------l~v~~~~ 166 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS-------------LFVVDLA 166 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE-------------EEEEESS
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE-------------EEEEECC
Confidence 1123567899999999887654 33443332 221 111111111111111111 0011111
Q ss_pred cCeEEE---e----cCCCCceEEEEeC-CE-EEEE--ECCC---cEEEEECCCCceeeeecccccccCCCCCEEEEEEe-
Q 002234 781 NGKTKL---L----NSSKYPKCLALVQ-GK-VYCG--CQDG---AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH- 845 (949)
Q Consensus 781 ~g~i~~---~----~~~~~v~~v~~~~-~~-l~sg--s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~- 845 (949)
.+.... . .....+..+.+.+ +. ++.. ..+. .+.++|..++........ ...+.-..-....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e--~~~~Wv~~~~~~~~~~ 244 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE--TSDGWVDVYDPPHFLG 244 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE--ESSSSSSSSSEEEE-T
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe--cCCcceeeeccccccc
Confidence 111111 1 1122344455542 33 3332 2222 356677777665433321 111111222344443
Q ss_pred -CCceEEEEEECCC-CEEEEEECCCCeeEEeec-CCCcEEE-EEEcCC---EEEEEECC----CeEEEEECCCCcEEEEe
Q 002234 846 -NGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRA-MVVSSE---LVYLGCKG----GTVEIWDQKRQIRIETL 914 (949)
Q Consensus 846 -~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~-l~~s~d---~l~sgs~d----g~I~vwd~~~~~~~~~l 914 (949)
++..++.....+| ..|.+.+...+... .+. +.-.|.. +.++++ ..+++..+ ..++.-++..+..+..+
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~L 323 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCL 323 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEES
T ss_pred CCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEec
Confidence 3444444444555 36666777766644 444 5566755 556665 34455543 35666677633445556
Q ss_pred ccccccceeEEEEeCCCCEEEEEe
Q 002234 915 QTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
. ...+.-..+.|||||++++-..
T Consensus 324 T-~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 324 T-CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-TTSSTTEEEEE-TTSSEEEEEE
T ss_pred c-CCCCCceEEEECCCCCEEEEEE
Confidence 3 2222225899999999887543
No 383
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.45 E-value=0.032 Score=63.88 Aligned_cols=213 Identities=10% Similarity=0.038 Sum_probs=112.0
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.+....-....+.++|+|+.++. +.||...++...... ..... .....+|.+.++ .++...++++
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k~~G-----------~g~~~vw~~~n~-yAv~~~~~~I 91 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NKAFG-----------SGLSFVWSSRNR-YAVLESSSTI 91 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EEEEE-----------E-SEEEE-TSSE-EEEE-TTS-E
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--ccccC-----------ceeEEEEecCcc-EEEEECCCeE
Confidence 33344556788999999998888 556777788744321 11111 112234777444 5666667778
Q ss_pred EEecC-CC--------CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 785 KLLNS-SK--------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 785 ~~~~~-~~--------~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
.++.. .. ...+-...+|.++....++.|.+||..+++.+..... .+|..+.|++++.+++-.+
T Consensus 92 ~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 92 KIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp EEEETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-
T ss_pred EEEEcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEe
Confidence 87532 11 1112222236666666667999999999998854331 2489999999999999888
Q ss_pred CCCCEEEEEECCCC-----------eeEEeecC-CCcEEEEEEcCCEEEEEECCCeEEEEECCCCc--EEEEeccccccc
Q 002234 856 LDGAAVKMWSTSNY-----------NMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI--RIETLQTGTSGK 921 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~-----------~~~~~~~~-~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~--~~~~l~~~h~~~ 921 (949)
.+ .+.+++.... .....+.. ...|.+..|..|.++-.+.+ .++.+ -.|+ .+..+ ..+
T Consensus 164 ~~--~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl--~~Ge~~~i~~l----d~~ 234 (443)
T PF04053_consen 164 KD--SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYL--VNGETGIIAHL----DKP 234 (443)
T ss_dssp S---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEE--ETTEEEEEEE-----SS-
T ss_pred CC--eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEE--EcCCcceEEEc----CCc
Confidence 66 5777765433 02222222 56778888888833333333 66653 2333 23333 235
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 922 VQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 922 I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.=+.+.|+.+.++....|+.|..+.++
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 6667788877899999999999888763
No 384
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00015 Score=86.65 Aligned_cols=74 Identities=24% Similarity=0.471 Sum_probs=67.6
Q ss_pred CCCCCcccCcCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 13 HTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~~-cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
.++|++|.-||...+|.|||++| .|++-||+-|.+++-.. .+-|.||.+++...+. ||..||..|+.|..++..
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~-pn~eLK~kI~~~~~ek~~ 939 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVS-PNEELKAKIRCWIKEKRN 939 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcC-CCHHHHHHHHHHHHHhhh
Confidence 46999999999999999999997 99999999999998874 4899999999999995 999999999999876543
No 385
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.38 E-value=0.0094 Score=69.14 Aligned_cols=165 Identities=9% Similarity=0.008 Sum_probs=102.9
Q ss_pred eEEEEeCCCEEEEEEec----CeEEEecCCCCceEEEEe---------CCE-EEEEECCCcEEEEECCC----C-ceeee
Q 002234 765 ILCFIPQGAGIKVHLRN----GKTKLLNSSKYPKCLALV---------QGK-VYCGCQDGAIQEIDLAT----G-TFATI 825 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~----g~i~~~~~~~~v~~v~~~---------~~~-l~sgs~Dg~I~iwd~~~----~-~~~~~ 825 (949)
.+.++|+|+++.+.+.+ .++...+....-..+.|+ +++ ... .++.|.++|..+ + .....
T Consensus 239 ~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y 316 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY 316 (635)
T ss_pred cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE
Confidence 34488999998888643 233333333333444443 222 222 367899999988 3 33221
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee------------EEeecCCCcEEEEEEcCC--EE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM------------VGSLPTLSEVRAMVVSSE--LV 891 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~------------~~~~~~~~~v~~l~~s~d--~l 891 (949)
..-......+.++||+.+++.++.-..++.+.|+.+.+. +....-.......+|+++ -.
T Consensus 317 -------IPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ay 389 (635)
T PRK02888 317 -------VPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAY 389 (635)
T ss_pred -------EECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEE
Confidence 122356778999999999988877556999999987552 444444555667788887 34
Q ss_pred EEEECCCeEEEEECCC----------CcEEEEec----cccccceeEEEEeCCCCEEEEEe
Q 002234 892 YLGCKGGTVEIWDQKR----------QIRIETLQ----TGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~----------~~~~~~l~----~~h~~~I~~l~~spdg~~L~sgs 938 (949)
.+-.-|..|..||+.+ ...+.++. .+|.....+=.-.|||++|++..
T Consensus 390 tslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 390 TTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred EeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 4456788999999876 23444442 23432222223467888888764
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.37 E-value=0.096 Score=56.51 Aligned_cols=231 Identities=13% Similarity=0.131 Sum_probs=130.7
Q ss_pred cccEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeE-----------
Q 002234 639 EMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ----------- 704 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~----------- 704 (949)
.++.|+.|..+| +.+++.. ........+...|..+...++ .++.- .||.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence 577889998888 8888883 222333334445999999995 43333 3599999998764211100
Q ss_pred -EecccCCCEEEEE--EecCCCEEEEEeCCCcEEEEECCCCe--e-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 705 -QIREHTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNEE--I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 705 -~l~~H~~~V~~v~--fspdg~~L~Sgs~Dg~I~vWd~~~~~--~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
.-......+...+ -...+...+.....++|.+|.+..+. . .......
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--------------------------- 136 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--------------------------- 136 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE---------------------------
Confidence 0112233455444 11234444444455588888876631 1 1222222
Q ss_pred EecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccccc------ccCCCCCEEEEEEeCCceEEE
Q 002234 779 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK------LLGKANPVHALQVHNGLVYTA 852 (949)
Q Consensus 779 ~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~ 852 (949)
....+.++.+.++.++.|..++ ..+.|+.++........... ......++..+... ++.+++
T Consensus 137 ----------lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll 204 (275)
T PF00780_consen 137 ----------LPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLL 204 (275)
T ss_pred ----------cCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEE
Confidence 2334555556666677776544 67788887665543321110 01122344444444 456666
Q ss_pred EEECCCCEEEEEECCCCeeEE--eecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEec
Q 002234 853 STSLDGAAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 853 s~s~Dg~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
+. | .+-+|=-..|++.+ .+.-...+.++++...++++.+.+ .|.||++.+++.++++.
T Consensus 205 ~~--~--~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 205 CY--D--NIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred Ee--c--ceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 65 2 34444333454443 333345677888877777776664 59999999999999984
No 387
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.32 E-value=0.092 Score=53.45 Aligned_cols=101 Identities=10% Similarity=-0.043 Sum_probs=63.4
Q ss_pred cccEEEEecCCCCeEEEecCCc--eeeecCCCCce---EEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCE
Q 002234 639 EMVKVLSNGHDSSADFWNHREL--VHVDSSENGKV---LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 713 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V---~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V 713 (949)
-|++++.|...|.+.+.+.++. ...+.. .+.| -.++|+...+..|+.|++.+.-|..+. .++...+-..+.-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~--~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY--GCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccccc--ceEEecccCCcee
Confidence 4677888999998888877643 222111 1122 234555669999999999999999988 7887765444333
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~ 742 (949)
.+=+..|-...|+.+...|.|.--..++.
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCC
Confidence 34445552334555555566655555554
No 388
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.29 E-value=0.00097 Score=61.66 Aligned_cols=102 Identities=11% Similarity=0.112 Sum_probs=82.0
Q ss_pred hhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccc
Q 002234 295 TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR 374 (949)
Q Consensus 295 ~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r 374 (949)
.+++.|+++.|++++..++.+.|..++.+|.++......++..+.+.+.++.++.++...+.+.+..|+.+|.++....-
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999888878888899999999999999999988999999999999977532
Q ss_pred cchhHHHHHHhhccCCchhHHHHHHHHhhc
Q 002234 375 RTFNEQILHIIKDEGTYSSMHTLLVYLQTA 404 (949)
Q Consensus 375 ~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~ 404 (949)
.....+.+.|.+ ..|+.+|+..
T Consensus 82 -----~~~~~~~~~g~l---~~l~~~l~~~ 103 (120)
T cd00020 82 -----DNKLIVLEAGGV---PKLVNLLDSS 103 (120)
T ss_pred -----HHHHHHHHCCCh---HHHHHHHhcC
Confidence 223334445544 3466665444
No 389
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.29 E-value=7.9e-05 Score=83.54 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=123.0
Q ss_pred CceEEEEEeCC----EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-CCCEEEEEeC----CCcEEEEEC
Q 002234 669 GKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSL----DKTARVWSI 739 (949)
Q Consensus 669 ~~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~----Dg~I~vWd~ 739 (949)
..+.|++++-+ .++.|..+|.|-+-.+.......-....+|....++++|++ |.++||.|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 44566666542 78899999999998877553222344567889999999999 7778887732 667999999
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe--CCEEEEEECCCcEEEEEC
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~--~~~l~sgs~Dg~I~iwd~ 817 (949)
.++-. .|..... |+. +. .+ ...++.+. ...+.+|.....++++|+
T Consensus 137 ~s~lt---------vPke~~~-------fs~-~~------l~----------gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 137 NSLLT---------VPKESPL-------FSS-ST------LD----------GQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred ccccC---------CCccccc-------ccc-cc------cc----------CccccccccCcchhhcccccchhhhhhh
Confidence 98621 1111111 222 10 00 00112221 123778888889999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEEC-CC-CeeEEeecCC-----CcEEEEEEcCC
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWST-SN-YNMVGSLPTL-----SEVRAMVVSSE 889 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~-~~-~~~~~~~~~~-----~~v~~l~~s~d 889 (949)
+..... ...-.+..+..+.++| .+.|+++.. || .|.+||. ++ ..++..+.+. ..+..++|.|.
T Consensus 184 Rqs~~~-------~~svnTk~vqG~tVdp~~~nY~cs~~-dg-~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 184 RQSLDS-------VSSVNTKYVQGITVDPFSPNYFCSNS-DG-DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred hhhhhh-------hhhhhhhhcccceecCCCCCceeccc-cC-ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 843221 1111234567788888 777877776 65 9999993 33 2233333332 34889999987
Q ss_pred ---EEEEEEC-CCeEEEEECC
Q 002234 890 ---LVYLGCK-GGTVEIWDQK 906 (949)
Q Consensus 890 ---~l~sgs~-dg~I~vwd~~ 906 (949)
.+++.+. .++|+.+|+.
T Consensus 255 rtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CcchhhhhccCcceEEEeccc
Confidence 4555554 4789999975
No 390
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.26 E-value=0.0016 Score=73.60 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=63.5
Q ss_pred cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002234 665 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~ 742 (949)
...+..|.|.+++|+ .++.|+.||+|.+||...+. ..+..+.-..+.++|+|+|..+++|+.-|.+.+||+.-+
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 357889999999995 99999999999999998762 223344556789999999999999999999999999775
Q ss_pred e
Q 002234 743 E 743 (949)
Q Consensus 743 ~ 743 (949)
.
T Consensus 332 p 332 (545)
T PF11768_consen 332 P 332 (545)
T ss_pred c
Confidence 4
No 391
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.25 E-value=0.068 Score=60.37 Aligned_cols=223 Identities=13% Similarity=0.129 Sum_probs=122.2
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE-EEe-------------ecCCCceeeeeecc--c-eEEEEeCCCE
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQV-------------HDIKDQIQNLAVSN--S-ILCFIPQGAG 774 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~-~~~-------------~~~~~~v~~l~~~~--~-~~~fsp~g~~ 774 (949)
.|+.+.|.++..-|+.|...|.|-+|.+...+... ... ....+.+.++..-. . .-.|.|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P---- 78 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP---- 78 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE----
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc----
Confidence 58899999998899999999999999886653111 000 00112222222000 0 000111
Q ss_pred EEEEEecCeEEEec-CCCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccc--cccCCCCCEEEEEEe-----
Q 002234 775 IKVHLRNGKTKLLN-SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR--KLLGKANPVHALQVH----- 845 (949)
Q Consensus 775 l~~~~~~g~i~~~~-~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--~~~~h~~~V~~l~~~----- 845 (949)
..+++ ..+.|.+++.++ |.+++|+.+|.+.+.|++....+....... .-......++++.|.
T Consensus 79 ---------~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 79 ---------LTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp ---------EEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred ---------hhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 11222 367899999987 999999999999999998888775532211 112234568888885
Q ss_pred CCc---eEEEEEECCCCEEEEEECCC---Ce----eEEee-cCCCcEEEEE-EcC----------------------CEE
Q 002234 846 NGL---VYTASTSLDGAAVKMWSTSN---YN----MVGSL-PTLSEVRAMV-VSS----------------------ELV 891 (949)
Q Consensus 846 ~~~---~~l~s~s~Dg~~I~iwd~~~---~~----~~~~~-~~~~~v~~l~-~s~----------------------d~l 891 (949)
.|+ ..+.+|...| .+.+|.+-- +. ..... .+.+.+..+. ++. +.+
T Consensus 150 ~D~ySSi~L~vGTn~G-~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSG-NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TSSSEEEEEEEEETTS-EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCcccceEEEEEeCCC-CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 333 5677777776 898887641 11 11222 2445555544 211 135
Q ss_pred EEEECCCeEEEEECCCCcEEEEeccccccceeEEEE-----eCCCCEEEEEeCCCcEEEEeCC
Q 002234 892 YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL-----DDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~-----spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++...+..++|+...+.+..++.. ...-....+.+ ...+..|++-..||.|+++.+.
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 666667889999999888777664 22223334444 2356788888999999999873
No 392
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00018 Score=75.31 Aligned_cols=49 Identities=24% Similarity=0.549 Sum_probs=41.0
Q ss_pred CCCcccCcCccccc-cCc------------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIF-DDP------------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 15 ~~~~~~Cpic~~~~-~dP------------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
--+|-.|.||++-| .-| -.++|||.+=-.|++.|+++. .+||+||.++-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 34678899999984 333 679999999999999999984 59999999853
No 393
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.18 E-value=0.00014 Score=77.33 Aligned_cols=35 Identities=11% Similarity=0.448 Sum_probs=31.8
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHHHHh
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 50 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~ 50 (949)
++++.||||+..++||++++|||+.|+.|-..-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 67999999999999999999999999999876543
No 394
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.14 E-value=0.06 Score=62.72 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCceEEEEEECCCCEEEEEECCC-----CeeEEeecCCCcEEEEEEcCC--EE-EEEECCCeEEEEECCCCcE-------
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSN-----YNMVGSLPTLSEVRAMVVSSE--LV-YLGCKGGTVEIWDQKRQIR------- 910 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~-----~~~~~~~~~~~~v~~l~~s~d--~l-~sgs~dg~I~vwd~~~~~~------- 910 (949)
+++.+.... ++.|.+.|..+ ...+..++.......+.++|| ++ +++..+++|.|.|+.+.+.
T Consensus 286 kdGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEEC---CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 355554442 35899999998 567778888889999999999 44 4455689999999988652
Q ss_pred -----EEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 911 -----IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 911 -----~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
......| ..-...+|+++|+...|-.-|..|-.||++
T Consensus 363 ~~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 363 PRDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 4444322 234567899999988888889999999973
No 395
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.14 E-value=0.014 Score=70.17 Aligned_cols=132 Identities=11% Similarity=0.180 Sum_probs=89.9
Q ss_pred ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC------CceEEEEEECCCCEEEEEECCCC--eeEE----e
Q 002234 807 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN------GLVYTASTSLDGAAVKMWSTSNY--NMVG----S 874 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~------~~~~l~s~s~Dg~~I~iwd~~~~--~~~~----~ 874 (949)
.....++-.|+..|+.+..+..+. ..+|..++-.. +...+++.+ + +.+..||.+-. +++. .
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~-----~~~v~~~~p~~K~aqlt~e~tflGls-~-n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHD-----DIPVVDIAPDSKFAQLTNEQTFLGLS-D-NSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCC-----CcceeEecccccccccCCCceEEEEC-C-CceEEeccCCCCCceeeccccc
Confidence 356788999999999985544321 13355554421 222333333 3 48999998853 2332 2
Q ss_pred ecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 875 LPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 875 ~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+.......|++-+.+ +||+|+.+|.||+||. .|+.-.+...+-..+|..|..+.||+++++.+. ..+.+++
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 224677899999988 8999999999999995 455555555577789999999999999886654 4555554
No 396
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.12 E-value=0.032 Score=67.93 Aligned_cols=228 Identities=11% Similarity=0.093 Sum_probs=133.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
.+.|.++.|.-+++-++.+..+|.|.+-|..+......... ...|.++. |+||++.++..+..+++.+-+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aas-------wS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV--DNGISAAS-------WSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec--cCceEEEe-------ecCCCcEEEEEeCCcEEEEEec
Confidence 36899999999999999999999999999888755444443 44555555 9999999988887777655432
Q ss_pred CCCc---eEEEEe---CCEEEEEECCCcEEEEECCCCceeeee-cccccccC---CCCCEEEEEEeCCceEEEEEE---C
Q 002234 790 SKYP---KCLALV---QGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLG---KANPVHALQVHNGLVYTASTS---L 856 (949)
Q Consensus 790 ~~~v---~~v~~~---~~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s---~ 856 (949)
.-.+ +.+... .++.+.++....=.-+.-..|+..... ..+.+..+ ..+.-++|.|-.||.|+++.. .
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 1100 011000 123444444332222222222111000 00001111 122345789999998888742 2
Q ss_pred CC-CEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEE---EECCCeEEEEECCCCc---EEEEeccccccceeEEE
Q 002234 857 DG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL---GCKGGTVEIWDQKRQI---RIETLQTGTSGKVQCMA 926 (949)
Q Consensus 857 Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~s---gs~dg~I~vwd~~~~~---~~~~l~~~h~~~I~~l~ 926 (949)
.| +.|++||.. |..-.+-. ....-.+++|-|. .+++ -+.|+.|.+|..+.-. -.-.+. .....|..++
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~ 296 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELA 296 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheee
Confidence 33 799999987 33322211 2344557888776 3443 2456789999865422 111111 1222489999
Q ss_pred EeCCCCEEEE---EeCCCcEEEEeC
Q 002234 927 LDDNEEFLVI---GTSDGRIQAWGL 948 (949)
Q Consensus 927 ~spdg~~L~s---gs~Dg~I~iWdl 948 (949)
|+.++..|++ ......|++|-+
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEe
Confidence 9999999987 445555999964
No 397
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0052 Score=64.37 Aligned_cols=217 Identities=15% Similarity=0.222 Sum_probs=132.1
Q ss_pred hhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC------hhhHHHHHHhcC----CChHHH
Q 002234 173 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG------LLEAVVLIDLLR----PSTRTL 242 (949)
Q Consensus 173 l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g------~~~Aa~~l~~L~----~~~~~~ 242 (949)
|+.+|. +.+.+|.+.+|.+|.|++-..+. ++.++=..|++++++.+|.+. ...|..+|-+|. |.+ +-
T Consensus 162 fiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P-~w 238 (526)
T COG5064 162 FIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP-DW 238 (526)
T ss_pred HHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC-ch
Confidence 444443 57889999999999999654444 444444889999999888665 457788888884 222 22
Q ss_pred HHhh-hhHHHHHHHHhcccc------------------chhc------------ccCchh-----hHHHHHHHHhcCCcc
Q 002234 243 IEMD-MMESLMTVIKKKEED------------------FLKM------------CLKPKS-----VSVLLLGQMIGDSEE 286 (949)
Q Consensus 243 ~~~~-~~~~lv~~l~~~~~~------------------~~~~------------~~~~~~-----a~~~~~~~~~~~~~~ 286 (949)
..|. .+|.|-.++-....+ ...+ +++-++ -++--.+.+++|.|.
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcc
Confidence 2222 224444444332111 0000 111111 144445566666654
Q ss_pred cccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHH
Q 002234 287 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFL 366 (949)
Q Consensus 287 ~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l 366 (949)
- -..|+.-|+++.+..+|.+.....|.-|-.-+.+..+-+..--.++-+..-++||++||.+..=+.|-.|-=++
T Consensus 319 Q-----TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 319 Q-----TQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred c-----eehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34578889999999999887777776666666666666666667788888899999999886555444332233
Q ss_pred HHhhh-ccccchhHHHHHHhhccCCchhHHHHHHH
Q 002234 367 SELVK-LNRRTFNEQILHIIKDEGTYSSMHTLLVY 400 (949)
Q Consensus 367 ~~l~~-~~r~~~~~~~l~~i~~~~~~~~~~~l~~~ 400 (949)
+++.. -.++- .+++-+...|.+...--++..
T Consensus 394 sNatsgg~~~P---D~iryLv~qG~IkpLc~~L~~ 425 (526)
T COG5064 394 SNATSGGLNRP---DIIRYLVSQGFIKPLCDLLDV 425 (526)
T ss_pred HhhhccccCCc---hHHHHHHHccchhHHHHHHhc
Confidence 33332 22333 347777888888664444433
No 398
>PRK09687 putative lyase; Provisional
Probab=97.04 E-value=0.026 Score=60.74 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=130.7
Q ss_pred HhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHHh
Q 002234 170 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 245 (949)
Q Consensus 170 ~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~~ 245 (949)
++.+.+.| ...+..+...++..|.++.. .-.++.+..+++.. +..|+.+|..|...+.. ..
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~ 89 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QD 89 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hH
Confidence 45566666 44677788888888887721 22335666777665 56777788888643321 11
Q ss_pred hhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHH
Q 002234 246 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 325 (949)
Q Consensus 246 ~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~ 325 (949)
+.++.|..++.+..+.. -..+++..|+.+- .........++..|...+...+.+.|..|+..|.
T Consensus 90 ~a~~~L~~l~~~D~d~~------VR~~A~~aLG~~~----------~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 90 NVFNILNNLALEDKSAC------VRASAINATGHRC----------KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred HHHHHHHHHHhcCCCHH------HHHHHHHHHhccc----------ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 23356665544332211 1233444444320 0001113345566777777778888888888774
Q ss_pred HhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcC
Q 002234 326 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 405 (949)
Q Consensus 326 ~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~ 405 (949)
++ .+...+++|+.+|...+...|..|+..|-.+ .. ... .+...|+..|....
T Consensus 154 ~~-----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~-~~~---------------~~~~~L~~~L~D~~ 205 (280)
T PRK09687 154 VI-----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSN-KY-DNP---------------DIREAFVAMLQDKN 205 (280)
T ss_pred cc-----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC-CCH---------------HHHHHHHHHhcCCC
Confidence 32 1234667888888888777888787777766 11 011 12233455554444
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcc
Q 002234 406 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 406 ~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~ 465 (949)
++-+--|+..|..+ . .+.+++.|+..|.+++. ...++.||..+++.
T Consensus 206 ~~VR~~A~~aLg~~---~--------~~~av~~Li~~L~~~~~---~~~a~~ALg~ig~~ 251 (280)
T PRK09687 206 EEIRIEAIIGLALR---K--------DKRVLSVLIKELKKGTV---GDLIIEAAGELGDK 251 (280)
T ss_pred hHHHHHHHHHHHcc---C--------ChhHHHHHHHHHcCCch---HHHHHHHHHhcCCH
Confidence 44455566666554 2 24689999999988773 55788898888763
No 399
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.094 Score=58.08 Aligned_cols=130 Identities=14% Similarity=0.228 Sum_probs=88.0
Q ss_pred CcEEEEECCCC-----ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe-eEEe--ecCCCcE
Q 002234 810 GAIQEIDLATG-----TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGS--LPTLSEV 881 (949)
Q Consensus 810 g~I~iwd~~~~-----~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~-~~~~--~~~~~~v 881 (949)
|.|.+|++... +..... -....++|++++...+. ++++. |+.|.+|++...+ .... +.....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~~~~-lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSFNGR-LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEETTE-EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhhCCE-EEEee---cCEEEEEEccCcccchhhheecceEEE
Confidence 88999999884 222111 12235789999988554 55554 4699999998777 4332 2245689
Q ss_pred EEEEEcCCEEEEEECCCeEEEEECCC-CcEEEEe-ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 882 RAMVVSSELVYLGCKGGTVEIWDQKR-QIRIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 882 ~~l~~s~d~l~sgs~dg~I~vwd~~~-~~~~~~l-~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.++....+++++|.....+.++..+. +..+..+ +......++++.|-+|++.++.+..+|.|.++..
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 99999999999999888888775443 2223222 2233447899999877789999999999998864
No 400
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.97 E-value=0.0018 Score=45.04 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=34.8
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
.+...+..|...|+++.|+++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56777888999999999999999999999999999996
No 401
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0076 Score=64.60 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=121.2
Q ss_pred cchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHh-cCCcchhHHHHHHHHh
Q 002234 291 SIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSEL 369 (949)
Q Consensus 291 ~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~l~~l 369 (949)
-|+.-+++.||..+|++.+++...+-|+.||.+|.-|.|++..+-..+-..++.++|+..|.+ ....+|.+|+.+++.|
T Consensus 115 DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissL 194 (342)
T KOG2160|consen 115 DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSL 194 (342)
T ss_pred hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 677788999999999999999999999999999999999999999999999999999997665 5666778899999999
Q ss_pred hhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcc-cCCCCCCccHHHHHHHHHHHhhcCCC
Q 002234 370 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLL-AEPRKMSIYREEAIDTLISCLRNSDY 448 (949)
Q Consensus 370 ~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l-~~~~~~~~~r~~~~~~l~~~l~~~~~ 448 (949)
++.+.-. ..++ ..-+++ ..|.-.|++...+.+..+-.+.+--+++ .++....+.....++..+.-+.....
T Consensus 195 IRn~~~g-~~~f----l~~~G~---~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~ 266 (342)
T KOG2160|consen 195 IRNNKPG-QDEF----LKLNGY---QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLD 266 (342)
T ss_pred HhcCcHH-HHHH----HhcCCH---HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccc
Confidence 8864322 2223 233344 3366667775555555433333333333 33444456677777777776665555
Q ss_pred hHHHHHHHHHHHhcCccccc
Q 002234 449 PAAQLAAAKTIVSLQGRFTT 468 (949)
Q Consensus 449 ~~~~~~~~~~l~~l~~~~~~ 468 (949)
...++.|..+++.+--.++.
T Consensus 267 ~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 267 FEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhhHHHHHHHHHHHHHHhh
Confidence 55577777777776555544
No 402
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.56 Score=53.64 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=38.5
Q ss_pred cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002234 689 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 689 ~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~ 742 (949)
.|+||+..+. .+.++.-..+.|.++.|+.+ ..|+....||+++++|+...
T Consensus 62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCC---EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 4999998876 45554433489999999875 56777889999999998754
No 403
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.94 E-value=0.91 Score=53.71 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=43.9
Q ss_pred EEEEEECCCCeeEEeecCCCc-EE-EEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccc
Q 002234 860 AVKMWSTSNYNMVGSLPTLSE-VR-AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 917 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~~~~~-v~-~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 917 (949)
.|.-+|+.+++.....+...+ .. .+...++.++.++.+|.++.+|.++|+.+..++.+
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 688899999998887764322 11 23445567778888999999999999999988644
No 404
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.86 E-value=0.00051 Score=77.31 Aligned_cols=187 Identities=14% Similarity=0.208 Sum_probs=115.8
Q ss_pred EEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeC-C--EEEEEe----CCCcEEEEecCCC--ceeeeEEecc
Q 002234 642 KVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR-D--KIFSGH----SDGTIKVWTGRGS--ILHLIQQIRE 708 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~-d--~lasgs----~Dg~I~vWd~~t~--~~~~i~~l~~ 708 (949)
.++.|..+|.|.+-... ....+..+|....++++|++ | .||.|- .|..+.|||+.++ ....-..+.+
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~ 151 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS 151 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc
Confidence 56778888999887765 23455667888999999998 3 777774 4678999999876 1112222222
Q ss_pred -cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 709 -HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 709 -H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
....+.+++|..+.+++.+|...+.+.++|++.....+.... ...+..+. ..|
T Consensus 152 ~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~t-------Vdp----------------- 205 (783)
T KOG1008|consen 152 STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGIT-------VDP----------------- 205 (783)
T ss_pred ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hhhcccce-------ecC-----------------
Confidence 445567889988899999999999999999985321111000 01111221 111
Q ss_pred cCCCCceEEEEeCCEEEEEECCCcEEEEEC-CCCceee-eecccccccCCCCCEEEEEEeCC-ceEEEEEECCCCEEEEE
Q 002234 788 NSSKYPKCLALVQGKVYCGCQDGAIQEIDL-ATGTFAT-IQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMW 864 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~-~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~Dg~~I~iw 864 (949)
|.++ .++...||.|.+||. .+-+... ... +........+..++|.|- .-.+++.+.|..+|+++
T Consensus 206 ----------~~~n-Y~cs~~dg~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 206 ----------FSPN-YFCSNSDGDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ----------CCCC-ceeccccCceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 1122 455666999999993 3222111 000 111111235889999874 33456667777799999
Q ss_pred ECC
Q 002234 865 STS 867 (949)
Q Consensus 865 d~~ 867 (949)
|+.
T Consensus 273 di~ 275 (783)
T KOG1008|consen 273 DIC 275 (783)
T ss_pred ccc
Confidence 985
No 405
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.82 E-value=1.2 Score=51.10 Aligned_cols=221 Identities=13% Similarity=0.190 Sum_probs=114.2
Q ss_pred ceEEEEEeCC--EEE-EEeCCC----cEEEEecCCCceeeeEE-ecccCCCEEEEEEecCCCEEEEEeCCC---------
Q 002234 670 KVLSIACFRD--KIF-SGHSDG----TIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDK--------- 732 (949)
Q Consensus 670 ~V~~l~~s~d--~la-sgs~Dg----~I~vWd~~t~~~~~i~~-l~~H~~~V~~v~fspdg~~L~Sgs~Dg--------- 732 (949)
.+....+||| +++ +-+..| +++++|+.++ +.+.. +.. .. -..+.|.+|++.|+....|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~-~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIEN-PK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEE-EE-SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCcccc-cc-cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 3346778886 444 445545 4999999999 44432 222 11 12399999988877665443
Q ss_pred --cEEEEECCCCeeEEEEeecC-CCc--eeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE
Q 002234 733 --TARVWSIGNEEIHCVQVHDI-KDQ--IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 807 (949)
Q Consensus 733 --~I~vWd~~~~~~~~~~~~~~-~~~--v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs 807 (949)
.|+.|++.++...-...++. ... ...+. .++|++++++....+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~-------~s~d~~~l~i~~~~~------------------------- 248 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVS-------RSKDGRYLFISSSSG------------------------- 248 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEE-------E-TTSSEEEEEEESS-------------------------
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEE-------ecCcccEEEEEEEcc-------------------------
Confidence 37888888764221122211 112 22333 677887765433322
Q ss_pred CC-CcEEEEECCCC-----ceeeeecccccccCCCCCE-EEEEEeCCceEEEEEECCC--CEEEEEECCCCee---E-Ee
Q 002234 808 QD-GAIQEIDLATG-----TFATIQTGHRKLLGKANPV-HALQVHNGLVYTASTSLDG--AAVKMWSTSNYNM---V-GS 874 (949)
Q Consensus 808 ~D-g~I~iwd~~~~-----~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~---~-~~ 874 (949)
.+ ..+.+.|...+ ... .+......+ ..+....+..++.+. .+. +.|.-.++.+... . ..
T Consensus 249 ~~~s~v~~~d~~~~~~~~~~~~-------~l~~~~~~~~~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l 320 (414)
T PF02897_consen 249 TSESEVYLLDLDDGGSPDAKPK-------LLSPREDGVEYYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVL 320 (414)
T ss_dssp SSEEEEEEEECCCTTTSS-SEE-------EEEESSSS-EEEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEE
T ss_pred ccCCeEEEEeccccCCCcCCcE-------EEeCCCCceEEEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEE
Confidence 12 35677777764 221 112222233 344444444444443 211 3666667776552 2 22
Q ss_pred ecCCC--cEEEEEEcCCEEEEE-ECCC--eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEE
Q 002234 875 LPTLS--EVRAMVVSSELVYLG-CKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 934 (949)
Q Consensus 875 ~~~~~--~v~~l~~s~d~l~sg-s~dg--~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L 934 (949)
+.+.. .+..+....++++.. ..++ .|++||...+.....+...-.+.|..+...++++.+
T Consensus 321 ~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 321 IPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp E--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred cCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence 33433 577888888855544 4444 689999984444444433344556777666666544
No 406
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.82 E-value=0.004 Score=57.47 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=91.4
Q ss_pred HHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHH
Q 002234 242 LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAV 321 (949)
Q Consensus 242 ~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~ 321 (949)
+...+.++.|+..+..+.. .....++..+..+-. .+++....+.+.|+++.|++++..++.+.+..|+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~-------~~~~~a~~~l~~l~~-----~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~ 70 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDE-------NVQREAAWALSNLSA-----GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70 (120)
T ss_pred HHHcCChHHHHHHHHcCCH-------HHHHHHHHHHHHHhc-----CCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHH
Confidence 4556677888888887641 122334444444311 1257778888889999999999999999999999
Q ss_pred HHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhh
Q 002234 322 GILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 370 (949)
Q Consensus 322 ~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~ 370 (949)
.+|.++.+.....+..+.+.+.++.+++++...+.+.+..+..+|.+|.
T Consensus 71 ~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 71 WALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999998888788888888999999999999988888888888887763
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.81 E-value=0.6 Score=51.67 Aligned_cols=210 Identities=14% Similarity=0.197 Sum_probs=113.6
Q ss_pred CcEEEEecCCCceeeeEEecc-cCCCEEEEEE---ecC----CCEEEEEeC----------CCcEEEEECCCC-----ee
Q 002234 688 GTIKVWTGRGSILHLIQQIRE-HTKAVTGLAI---LQS----GEMLYSGSL----------DKTARVWSIGNE-----EI 744 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~-H~~~V~~v~f---spd----g~~L~Sgs~----------Dg~I~vWd~~~~-----~~ 744 (949)
+.|++.|..+. ..+.++.- ....+++++. ..+ ..+++.|+. .|.|.++++... ++
T Consensus 2 s~i~l~d~~~~--~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTF--EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTS--SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCC--eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 35778888777 33333321 2233444433 322 356776643 278888888874 34
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc-ee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FA 823 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~-~~ 823 (949)
+.+.....+++|.++ ...+++++++ .++.|.+|++...+ ..
T Consensus 80 ~~i~~~~~~g~V~ai-------------------------------------~~~~~~lv~~-~g~~l~v~~l~~~~~l~ 121 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAI-------------------------------------CSFNGRLVVA-VGNKLYVYDLDNSKTLL 121 (321)
T ss_dssp EEEEEEEESS-EEEE-------------------------------------EEETTEEEEE-ETTEEEEEEEETTSSEE
T ss_pred EEEEEEeecCcceEh-------------------------------------hhhCCEEEEe-ecCEEEEEEccCcccch
Confidence 444444444455444 4445564444 45889999999888 44
Q ss_pred eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE--ECCCCeeE--EeecCCCcEEEEEEc--CCEEEEEECC
Q 002234 824 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW--STSNYNMV--GSLPTLSEVRAMVVS--SELVYLGCKG 897 (949)
Q Consensus 824 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw--d~~~~~~~--~~~~~~~~v~~l~~s--~d~l~sgs~d 897 (949)
.. ........+.++....+ +++.+.... .+.++ +....+.. ..-.....++++.+- .+.++++..+
T Consensus 122 ~~-----~~~~~~~~i~sl~~~~~--~I~vgD~~~-sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 122 KK-----AFYDSPFYITSLSVFKN--YILVGDAMK-SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EE-----EEE-BSSSEEEEEEETT--EEEEEESSS-SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred hh-----heecceEEEEEEecccc--EEEEEEccc-CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 32 12222336777777755 555555443 56655 44222222 221245667888775 3489999999
Q ss_pred CeEEEEECCC-------Cc-EEE-EeccccccceeEE---EEeCC--CC------EEEEEeCCCcEEE
Q 002234 898 GTVEIWDQKR-------QI-RIE-TLQTGTSGKVQCM---ALDDN--EE------FLVIGTSDGRIQA 945 (949)
Q Consensus 898 g~I~vwd~~~-------~~-~~~-~l~~~h~~~I~~l---~~spd--g~------~L~sgs~Dg~I~i 945 (949)
|.+.++.... +. .+. .........|+++ .+.|. +. .++.++.+|.|.+
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999998762 22 222 2212234567777 55552 22 4888889999873
No 408
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.79 E-value=0.0031 Score=43.81 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=33.0
Q ss_pred cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 909 IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 909 ~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
++...+ ..|...|.++.|++++.++++++.||.+++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455666 36888999999999999999999999999996
No 409
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.71 Score=52.79 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=46.5
Q ss_pred CCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC--CCcEEEEEEcCC-EEEEEECCCeEEEEEC
Q 002234 836 ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 836 ~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~d-~l~sgs~dg~I~vwd~ 905 (949)
.+++..++++|++.+++....+| .+.+.+..-.+....+.. ......|.|.++ -++..- +..+.++..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g-~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~ 286 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSG-NLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGP 286 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCC-CEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECC
Confidence 35899999999999999998886 888887765556555553 356677777765 232222 344555543
No 410
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00094 Score=69.36 Aligned_cols=57 Identities=25% Similarity=0.469 Sum_probs=47.4
Q ss_pred CCCCCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
.+...|+.-.||+|.+--.+|-++ -+|..||+.||-.+... ...||+++.+..-.++
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 445677888999999999999887 55999999999999885 6699999888765443
No 411
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.77 E-value=0.061 Score=61.36 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=104.3
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeC---C-CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSL---D-KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~---D-g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
..+..-...+..-.|+|+++.++-.+. . ..+.++|+++++...+.... +. .....|+|||+.+
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g~-------~~~P~fspDG~~l---- 252 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--GN-------NGAPAFSPDGSKL---- 252 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--Cc-------cCCccCCCCCCEE----
Confidence 333334456677789998887655432 2 35899999998633333221 11 1122399999875
Q ss_pred ecCeEEEecCCCCceEEEEeCCEEEEEECCCc--EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC
Q 002234 780 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA--IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 857 (949)
Q Consensus 780 ~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D 857 (949)
+++...||. |.++|+.++.... +..-.+.-..=.|+|||.+++-.+..
T Consensus 253 -----------------------~f~~~rdg~~~iy~~dl~~~~~~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr 302 (425)
T COG0823 253 -----------------------AFSSSRDGSPDIYLMDLDGKNLPR-------LTNGFGINTSPSWSPDGSKIVFTSDR 302 (425)
T ss_pred -----------------------EEEECCCCCccEEEEcCCCCccee-------cccCCccccCccCCCCCCEEEEEeCC
Confidence 455555665 5556777766432 11111222245678999988887765
Q ss_pred CCE--EEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEE-CCCe--EEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 858 GAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGT--VEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 858 g~~--I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs-~dg~--I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
++. |.+.|.......+.......-..-.++|| +++..+ .+|. |.+.|..++...+.+. +......-.|.|+
T Consensus 303 ~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~n 380 (425)
T COG0823 303 GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPN 380 (425)
T ss_pred CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCC
Confidence 544 45555555544222222222226677888 444444 3454 7777776665444442 2223344556666
Q ss_pred CCEEEEE
Q 002234 931 EEFLVIG 937 (949)
Q Consensus 931 g~~L~sg 937 (949)
|+.+...
T Consensus 381 g~~i~~~ 387 (425)
T COG0823 381 GRMIMFS 387 (425)
T ss_pred CceEEEe
Confidence 6655443
No 412
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.75 E-value=0.15 Score=60.84 Aligned_cols=226 Identities=15% Similarity=0.186 Sum_probs=122.9
Q ss_pred ccEEEEecCCC------CeEEEecCCceeeec---CCCCceEEEEEeCC-EEEEEeCC------CcEEEEecCCCceeee
Q 002234 640 MVKVLSNGHDS------SADFWNHRELVHVDS---SENGKVLSIACFRD-KIFSGHSD------GTIKVWTGRGSILHLI 703 (949)
Q Consensus 640 ~~~l~s~s~dg------~I~vWd~~~~~~~~~---~h~~~V~~l~~s~d-~lasgs~D------g~I~vWd~~t~~~~~i 703 (949)
+..++.||.++ .+..+|+.+...... .+...-.+++..++ ..++||.| .++..||..+++|..+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 45667777763 566777764322111 13334556667776 78888888 3577889988866665
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCc-----EEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKT-----ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~-----I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
..+........... -+|...+.||.||. |-.||..+.+......... ....
T Consensus 365 a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~-------------------- 420 (571)
T KOG4441|consen 365 APMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSG-------------------- 420 (571)
T ss_pred CCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceee--------------------
Confidence 55543333222222 27888899999864 5667766654222221110 1111
Q ss_pred EecCeEEEecCCCCceEEEEeCCE-EEEEECC------CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEE
Q 002234 779 LRNGKTKLLNSSKYPKCLALVQGK-VYCGCQD------GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 851 (949)
Q Consensus 779 ~~~g~i~~~~~~~~v~~v~~~~~~-l~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 851 (949)
..++..+++ .++|+.| .++..||..++.......-... ..-..++...+..|.
T Consensus 421 ---------------~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-----R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 421 ---------------HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-----RSGFGVAVLNGKIYV 480 (571)
T ss_pred ---------------eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-----cccceEEEECCEEEE
Confidence 111222233 3344433 4578899999887643222111 122236666777776
Q ss_pred EEEECC---CCEEEEEECCCCeeEEe--ecCC-CcEEEEEEcCCEEEEEECCC-----eEEEEECCCCc
Q 002234 852 ASTSLD---GAAVKMWSTSNYNMVGS--LPTL-SEVRAMVVSSELVYLGCKGG-----TVEIWDQKRQI 909 (949)
Q Consensus 852 ~s~s~D---g~~I~iwd~~~~~~~~~--~~~~-~~v~~l~~s~d~l~sgs~dg-----~I~vwd~~~~~ 909 (949)
+.|..+ ..+|..||..+.+-... +... +.+..........++|+.|| +|..||..+.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 655432 13588899877554332 3333 33333334444677777665 67777776654
No 413
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.0034 Score=72.59 Aligned_cols=107 Identities=12% Similarity=0.178 Sum_probs=83.5
Q ss_pred EEEEEeCCceEEEEEEC---CCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 840 HALQVHNGLVYTASTSL---DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~---Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
+-..|||...+++.++. .|+.|.||- .+|++.+...-.-.+++++|+|. .++.|-.-|.+.+|...+.+ .++.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-eeee
Confidence 34567888887776642 235788873 45666555555556778999999 57788888999999987765 4555
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 915 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...|..+|..+.|||+|..|+|+..-|.|.+|..
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 5689999999999999999999999999999975
No 414
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=1.5 Score=49.74 Aligned_cols=233 Identities=18% Similarity=0.173 Sum_probs=138.9
Q ss_pred ceEEEEEeCC----EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCE-EEEEeCCCcEEEEECCCCee
Q 002234 670 KVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM-LYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 670 ~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~-L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
....+.+.++ +++....+ .+.+-+.... ........-...-..+++++.++. .++...++.|.+.|..+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n--~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSN--TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCc-eeeecccccc--eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc-
Confidence 4455666553 33333333 5666665533 121111111133456788888774 4555556899999977653
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
......... .+..+.++|+++.+.+.... ..++++.+.|..+++...
T Consensus 108 -~~~~~~vG~-------~P~~~~~~~~~~~vYV~n~~-------------------------~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 108 -VLGSIPVGL-------GPVGLAVDPDGKYVYVANAG-------------------------NGNNTVSVIDAATNKVTA 154 (381)
T ss_pred -eeeEeeecc-------CCceEEECCCCCEEEEEecc-------------------------cCCceEEEEeCCCCeEEE
Confidence 222221111 23334477777654222110 036888889988888775
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE-e----ecCCCcEEEEEEcCC--EEEEEECC
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-S----LPTLSEVRAMVVSSE--LVYLGCKG 897 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~-~----~~~~~~v~~l~~s~d--~l~sgs~d 897 (949)
... .+ ..+ ..++++|++..+.....+++.|.+.|.......+ . .........+.++++ ++++....
T Consensus 155 ~~~-----vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 155 TIP-----VG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEe-----cC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 311 11 133 8899999999766666455699999987766553 1 223455667888887 44444333
Q ss_pred ---CeEEEEECCCCcEEEE-eccccccceeEEEEeCCCCEEEEEeCC-CcEEEEe
Q 002234 898 ---GTVEIWDQKRQIRIET-LQTGTSGKVQCMALDDNEEFLVIGTSD-GRIQAWG 947 (949)
Q Consensus 898 ---g~I~vwd~~~~~~~~~-l~~~h~~~I~~l~~spdg~~L~sgs~D-g~I~iWd 947 (949)
+.+.+.|..++..... ...+.. ....+.++|+|+++.+.... +.+.+-|
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 6999999999887766 322222 46778899999998888544 6666554
No 415
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.71 E-value=0.0012 Score=70.17 Aligned_cols=53 Identities=21% Similarity=0.542 Sum_probs=43.2
Q ss_pred CCCcccCcCccccccC--ce-ec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDD--PV-TL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~d--Pv-~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
-...|.|||++..|.. ++ .+ +|||.|++.||.+-- ....||+|++++...++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4678999999999954 23 33 999999999999873 345799999999987764
No 416
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.15 Score=53.96 Aligned_cols=317 Identities=16% Similarity=0.213 Sum_probs=173.3
Q ss_pred hhhhhhhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHH
Q 002234 114 QATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLL 193 (949)
Q Consensus 114 ~~~~~~~~~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L 193 (949)
++++.+..+|....+++++. +|++...- ++.+..++...+ .|- +.+ |..+.+..+...+..+|
T Consensus 69 ~e~i~~~~~E~s~ll~~l~d-----~ck~~~A~--r~la~~~ga~~~--------~it-~~~-la~~~~~~~l~ksL~al 131 (461)
T KOG4199|consen 69 KEHIGQKLEETTELLEQLAD-----ECKKSLAH--RVLAGKNGAHDA--------LIT-LLE-LAESPNESVLKKSLEAI 131 (461)
T ss_pred HHHHHhhhHHHHHHHHHHHH-----HHhhhHHH--HHHhccCCCcch--------hhh-HHH-HhhCCchhHHHHHHHHH
Confidence 45555567777778888872 35554333 333333322111 111 222 34456666677777777
Q ss_pred HhhcccCccceeeccccCCcHHHHHHHHhhChhhHHHHHHhc----------CCChHHHHHhhhhHHHHHHHH-hccccc
Q 002234 194 SELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLL----------RPSTRTLIEMDMMESLMTVIK-KKEEDF 262 (949)
Q Consensus 194 ~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~~~Aa~~l~~L----------~~~~~~~~~~~~~~~lv~~l~-~~~~~~ 262 (949)
-.+....+.-. ..-+...++.+|.....++-.++.-+ ..+.++++....+|.++.+|. +|+.+.
T Consensus 132 ~~lt~~qpdl~-----da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~ 206 (461)
T KOG4199|consen 132 NSLTHKQPDLF-----DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRT 206 (461)
T ss_pred HHhhcCCcchh-----ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHH
Confidence 77755443211 11234466677765544443333332 245567777777788885554 444322
Q ss_pred hhcccCchhhHHHHHHHHhcCCcc----cccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhH
Q 002234 263 LKMCLKPKSVSVLLLGQMIGDSEE----SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSI 338 (949)
Q Consensus 263 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~ 338 (949)
++-++ + .+-.|++..|. .-..+++..|+.+|++..|++.++.|-.-.-..-.+.-+.-+.-.......|
T Consensus 207 VRel~---~----a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I 279 (461)
T KOG4199|consen 207 VRELY---D----AIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSI 279 (461)
T ss_pred HHHHH---H----HHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110 1 11112222211 1124788999999999999999997654222222222233344455555679
Q ss_pred hhhcCchhhHHHHHh-cCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCc-cchhHHHHH
Q 002234 339 ADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD-QCPVVAGLL 416 (949)
Q Consensus 339 ~~~~~~~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~-~~~~~a~~l 416 (949)
++.|.+..|+.++-+ +....|..+=..|.-|..+.- ...+-..|.+.|+.+..-+++.--++.|.. |+.+++.
T Consensus 280 ~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG---~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i-- 354 (461)
T KOG4199|consen 280 AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG---SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAII-- 354 (461)
T ss_pred HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC---CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHH--
Confidence 999999999998777 666667655555555544432 234455588888887655554432222211 1111111
Q ss_pred HhhhcccCCC-CCCccHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHhcCcc
Q 002234 417 LQLDLLAEPR-KMSIYREEAIDTLISCLRNSDYP-AAQLAAAKTIVSLQGR 465 (949)
Q Consensus 417 ~~l~~l~~~~-~~~~~r~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~l~~~ 465 (949)
-.| -|-.|. ..-.+..++-+..+++|+..... ++|..|+-.+-|+.-|
T Consensus 355 ~~l-~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 355 SIL-CLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHH-HhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 122 223332 22344566788889999988854 6898999888887554
No 417
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0028 Score=71.11 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=67.7
Q ss_pred CCCCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
-+++|++|..|....+|+|||++ .+|-+..|+-|..++-.+. +.|.-|.+++..++. ||-.|+..|..+....+.
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~-tDPFNRmPLtlddVt-pn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDG-TDPFNRMPLTLDDVT-PNAELREKINRFYKCKGQ 923 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCC-CCccccCCCchhhcC-CCHHHHHHHHHHHhcccc
Confidence 35799999999999999999998 7789999999999987754 999999999999995 999999999999876554
No 418
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.66 E-value=0.057 Score=63.45 Aligned_cols=223 Identities=11% Similarity=0.193 Sum_probs=147.1
Q ss_pred ccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHHh---hhhHH
Q 002234 178 FNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM---DMMES 250 (949)
Q Consensus 178 ~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~~---~~~~~ 250 (949)
....++.|++.+...|.++...+.... .+....+-++.++..|+.. ...|+.+|..|...+.....+ +..+.
T Consensus 86 L~h~~~~Vr~l~l~~l~~~~~~~~~~~-~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~ 164 (503)
T PF10508_consen 86 LTHPSPKVRRLALKQLGRIARHSEGAA-QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSK 164 (503)
T ss_pred hcCCCHHHHHHHHHHHHHHhcCCHHHH-HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHH
Confidence 335778999999999988855454433 3443566668888888776 456777888887766655443 23466
Q ss_pred HHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhc
Q 002234 251 LMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQE 330 (949)
Q Consensus 251 lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~ 330 (949)
|..++.+.++. .+ .=+++-++.-+ ..+.+....+...|.++.+++.+++++.-.|.+|..+|..+.+
T Consensus 165 L~~l~~~~~~~-vR---------~Rv~el~v~i~--~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 165 LKSLMSQSSDI-VR---------CRVYELLVEIA--SHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHHhccCHH-HH---------HHHHHHHHHHH--hcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 66666553321 11 11222121111 3345666777778888999999999999999999999998877
Q ss_pred cCCchhhHhhhcCchhhHHHHHhcCCcchhHH------HHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhc
Q 002234 331 DGKCRNSIADKAELAPVMESFMAASDGERFEI------VCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA 404 (949)
Q Consensus 331 ~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~------~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~ 404 (949)
......|+.+.|.++-++.++.......|..+ +.|+-++... .-.+++... -..++.+...+++.
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~----~~~~v~~~~-----p~~~~~l~~~~~s~ 302 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV----SPQEVLELY-----PAFLERLFSMLESQ 302 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc----ChHHHHHHH-----HHHHHHHHHHhCCC
Confidence 77788999999999999998877655544444 3444444432 122333322 23456667777778
Q ss_pred CCccchhHHHHHHhhhccc
Q 002234 405 NHDQCPVVAGLLLQLDLLA 423 (949)
Q Consensus 405 ~~~~~~~~a~~l~~l~~l~ 423 (949)
.+..++.|-..+.++..-.
T Consensus 303 d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 303 DPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred ChhHHHHHHHHHHHHhCCH
Confidence 8888888877888775433
No 419
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.022 Score=63.40 Aligned_cols=133 Identities=9% Similarity=0.196 Sum_probs=91.8
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE--------EEEEECCCCEEEEEECCCCee--E
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY--------TASTSLDGAAVKMWSTSNYNM--V 872 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~--------l~s~s~Dg~~I~iwd~~~~~~--~ 872 (949)
+..+.....++-.|+..|+.+..+. -|.. |+-+.+.|+..+ ++..+ ++.|.-||.+-... +
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk------~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs--~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWK------FEDD-INMVDITPDFKFAQLTSEQTLVGLS--DNSVFRIDPRVQGKNKL 419 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEee------ccCC-cceeeccCCcchhcccccccEEeec--CCceEEecccccCccee
Confidence 4556666788889999999885433 2222 666666655332 23322 35899999873221 1
Q ss_pred -----EeecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 873 -----GSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 873 -----~~~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
+.+.......|++-..+ ++++||.+|.|++||. .+..-.+..++-..+|..|..+.||++|+..+ +..+.+-
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 12224567888888877 8999999999999998 66666666578888999999999999887655 4444443
No 420
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0097 Score=67.48 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEE-EEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 002234 668 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT-GLAILQSGEMLYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~-~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
...|.-+.|+|. .+|.+..+|.|-+..++ - +.+.++.-|...++ +++|.|||+.|+.|-.||+|++-|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c--ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 345778899994 99999999999999988 3 68888887887787 999999999999999999999999999852
Q ss_pred EEEEeecCCCceeeee
Q 002234 745 HCVQVHDIKDQIQNLA 760 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~ 760 (949)
..-........|.++.
T Consensus 97 l~~~~~s~e~~is~~~ 112 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGI 112 (665)
T ss_pred eeccccccccchheee
Confidence 2221233344555544
No 421
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.54 E-value=0.35 Score=54.27 Aligned_cols=242 Identities=9% Similarity=0.077 Sum_probs=129.6
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeee------
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA------ 760 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~------ 760 (949)
.+.+.|||+.+++ +..+......+....|+|+|+.++-.. ++.|.+++..++....+.......-.+.+.
T Consensus 22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 3678999999983 333333367888999999999998886 478999999887544444333111111111
Q ss_pred ---eccceEEEEeCCCEEEEEEecC-eEE---Eec--CCC----CceEEEEeCCEEEEEECCC--cEEEEECCCCceeee
Q 002234 761 ---VSNSILCFIPQGAGIKVHLRNG-KTK---LLN--SSK----YPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATI 825 (949)
Q Consensus 761 ---~~~~~~~fsp~g~~l~~~~~~g-~i~---~~~--~~~----~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~ 825 (949)
-....+.|||||+.++....|. .++ +.+ ... .+..+.+. ..|..+. .+.++|+.+++....
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP----k~G~~np~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP----KAGDPNPRVSLFVVDLASGKTTEL 173 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE------BTTS---EEEEEEEESSSTCCCEE
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC----CCCCcCCceEEEEEECCCCcEEEe
Confidence 1134567999999998877662 222 221 111 12233322 0122222 356789988876432
Q ss_pred ecccccccCCCCCEEEEEEeCCce-E-EEEEECCCC--EEEEEECCCCeeEEeec--CCCcE---EEEEEc-CC---EEE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLV-Y-TASTSLDGA--AVKMWSTSNYNMVGSLP--TLSEV---RAMVVS-SE---LVY 892 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~-~-l~s~s~Dg~--~I~iwd~~~~~~~~~~~--~~~~v---~~l~~s-~d---~l~ 892 (949)
... .........+..+.|.+++. + +.....+.+ .+.+.|..++....... ....+ ....+. ++ ++.
T Consensus 174 ~~~-~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 174 DPP-NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp ----HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred eec-cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence 211 11223356788999988877 3 333444433 45666777665433332 22222 234443 44 566
Q ss_pred EEECCCe--EEEEECCCCcEEEEeccccccceeE-EEEeCCCCEEE-EEeC
Q 002234 893 LGCKGGT--VEIWDQKRQIRIETLQTGTSGKVQC-MALDDNEEFLV-IGTS 939 (949)
Q Consensus 893 sgs~dg~--I~vwd~~~~~~~~~l~~~h~~~I~~-l~~spdg~~L~-sgs~ 939 (949)
....+|. |++++..++. ...+. ...-.|.. +.|+++++.++ ++..
T Consensus 253 ~s~~~G~~hly~~~~~~~~-~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGK-PRQLT-SGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EEEcCCCcEEEEEcccccc-eeccc-cCceeecccceEcCCCCEEEEEecC
Confidence 6667775 5555665555 33443 23335644 67888877654 5544
No 422
>PRK09687 putative lyase; Provisional
Probab=96.52 E-value=0.37 Score=51.93 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=131.9
Q ss_pred chhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC-----hhhHHHHHHhcCCCh
Q 002234 165 SKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPST 239 (949)
Q Consensus 165 ~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g-----~~~Aa~~l~~L~~~~ 239 (949)
..+.++..+.. |..+.++.+...++.+|..|....+. ....++.|..++... +..|+.+|..+....
T Consensus 51 ~~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~ 122 (280)
T PRK09687 51 GGQDVFRLAIE-LCSSKNPIERDIGADILSQLGMAKRC-------QDNVFNILNNLALEDKSACVRASAINATGHRCKKN 122 (280)
T ss_pred CcchHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc
Confidence 34555666666 45677899999999999999542220 123456666664333 457778888875432
Q ss_pred HHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHH
Q 002234 240 RTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIA 319 (949)
Q Consensus 240 ~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~ 319 (949)
.+- ....+..|...+...+ ..+ .-+++.-|. .+-...+++.|+..++..+...|..
T Consensus 123 ~~~-~~~a~~~l~~~~~D~~-~~V------R~~a~~aLg----------------~~~~~~ai~~L~~~L~d~~~~VR~~ 178 (280)
T PRK09687 123 PLY-SPKIVEQSQITAFDKS-TNV------RFAVAFALS----------------VINDEAAIPLLINLLKDPNGDVRNW 178 (280)
T ss_pred ccc-chHHHHHHHHHhhCCC-HHH------HHHHHHHHh----------------ccCCHHHHHHHHHHhcCCCHHHHHH
Confidence 111 0111122333332221 111 111222221 2345678999999999999999999
Q ss_pred HHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHH
Q 002234 320 AVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 399 (949)
Q Consensus 320 a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~ 399 (949)
|+..|-.. ..+ ....+++|+.+|...+...|..|+..|.++-. .. .+..|+.
T Consensus 179 A~~aLg~~-~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---~~----------------av~~Li~ 230 (280)
T PRK09687 179 AAFALNSN-KYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---KR----------------VLSVLIK 230 (280)
T ss_pred HHHHHhcC-CCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---hh----------------HHHHHHH
Confidence 99988765 110 12345788989988899999888877776411 12 2233444
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002234 400 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 459 (949)
Q Consensus 400 ~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l 459 (949)
+|+... -+--++..|..+ .+ ++|+..|...+...+++.++..|-++|
T Consensus 231 ~L~~~~--~~~~a~~ALg~i---g~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 231 ELKKGT--VGDLIIEAAGEL---GD--------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHcCCc--hHHHHHHHHHhc---CC--------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 444422 123456666665 32 368999999998566667776666655
No 423
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0015 Score=66.75 Aligned_cols=48 Identities=19% Similarity=0.473 Sum_probs=38.5
Q ss_pred cccCcCcccccc--Cc-eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 18 DFVCPITTHIFD--DP-VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 18 ~~~Cpic~~~~~--dP-v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
-..|-||++-|. |- +++||.|.|=+.|+.+|+..-...||+||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 357999998763 33 4579999999999999998545589999988763
No 424
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.49 Score=49.15 Aligned_cols=272 Identities=12% Similarity=0.110 Sum_probs=140.1
Q ss_pred cccc-EEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC---EEEEEeCCCc-EEEEecCCCceeeeEEecccCCC
Q 002234 638 FEMV-KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGT-IKVWTGRGSILHLIQQIREHTKA 712 (949)
Q Consensus 638 ~~~~-~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~-I~vWd~~t~~~~~i~~l~~H~~~ 712 (949)
.|++ ..++.+.+|.|. .... -...-..++|+|- -++.+-.-|+ ..++|..+. +...++...++.
T Consensus 45 ~dgs~g~a~~~eaGk~v-~~~~--------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~--~~pv~~~s~~~R 113 (366)
T COG3490 45 RDGSFGAATLSEAGKIV-FATA--------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA--QEPVTLVSQEGR 113 (366)
T ss_pred cCCceeEEEEccCCcee-eeee--------cccccCCeecCCCCcceEEEEecCCceEEEECCCCC--cCcEEEecccCc
Confidence 3555 455566666653 2111 1112234566653 4555555554 457888877 333333211111
Q ss_pred --EEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 713 --VTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 713 --V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
--.=.|||||.+|+..-.| |.|-|||.+.+-.+.-....+. +.+..+.+.+||+.+++.. |-|.
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G-------iGpHev~lm~DGrtlvvan--GGIe 184 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG-------IGPHEVTLMADGRTLVVAN--GGIE 184 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC-------cCcceeEEecCCcEEEEeC--Ccee
Confidence 1113589999999887554 7899999886421221222222 2233444899999887654 2222
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccccccc--CCCCCEEEEEEeCCceEEEEEECCCC----
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL--GKANPVHALQVHNGLVYTASTSLDGA---- 859 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~Dg~---- 859 (949)
..- .|....+-.-+..-++.+.|..+|..+.. ..+. -+.-.|.-++..+|+...+.+-..|-
T Consensus 185 thp--------dfgR~~lNldsMePSlvlld~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 185 THP--------DFGRTELNLDSMEPSLVLLDAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred ccc--------ccCccccchhhcCccEEEEeccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 110 01111233334455667777777776643 1222 34557888888888777666543330
Q ss_pred EEEEEECCCCeeEEeecC--------CCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 860 AVKMWSTSNYNMVGSLPT--------LSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
---+=-...++++..+.- ...|-+++.+.+ .++..+ ..+...+||..+|..+..-.- .....++-
T Consensus 253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGva~- 328 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGVAA- 328 (366)
T ss_pred CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---ccccccee-
Confidence 000111112333333321 245667888754 444444 556788999999987654421 12233332
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 002234 929 DNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 929 pdg~~L~sgs~Dg~I~iW 946 (949)
...-++..+.+|.|..+
T Consensus 329 -~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 329 -AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred -ccCceEEecCCceEEec
Confidence 23335555567776643
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.40 E-value=3.1 Score=49.25 Aligned_cols=101 Identities=8% Similarity=0.059 Sum_probs=57.4
Q ss_pred ccEEEEecCCCCeEEEecCCceeee--cC-CCCce----------EEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVD--SS-ENGKV----------LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~--~~-h~~~V----------~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
+..++.++.++.|.-.|..+..... .. -...+ ..+++..+.++.++.||.+.-.|..+| +.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TG--k~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTG--KVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCC--CEEeec
Confidence 4455566667777766765322111 11 00011 124556678888999999999999999 566554
Q ss_pred cc--cCCCEEEEEEec--CCCEEEEEe------CCCcEEEEECCCCe
Q 002234 707 RE--HTKAVTGLAILQ--SGEMLYSGS------LDKTARVWSIGNEE 743 (949)
Q Consensus 707 ~~--H~~~V~~v~fsp--dg~~L~Sgs------~Dg~I~vWd~~~~~ 743 (949)
.. +... ..+.-+| .+..++.++ .+|.|..+|.++|+
T Consensus 147 ~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 147 KNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred cccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 32 2110 0111122 123455543 26899999999996
No 426
>PHA02713 hypothetical protein; Provisional
Probab=96.40 E-value=0.19 Score=60.06 Aligned_cols=218 Identities=8% Similarity=0.119 Sum_probs=103.4
Q ss_pred EEEeCC-EEEEEeCC------CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCC-----cEEEEECCC
Q 002234 674 IACFRD-KIFSGHSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGN 741 (949)
Q Consensus 674 l~~s~d-~lasgs~D------g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg-----~I~vWd~~~ 741 (949)
++...+ .++.||.+ .++..||..++.+..+..+........ + ..-+|+..+.||.++ ++..||..+
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-L-AVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-E-EEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 344444 66667653 347788988886554444432222222 2 223677778888764 477888887
Q ss_pred CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc
Q 002234 742 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 821 (949)
Q Consensus 742 ~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~ 821 (949)
++........ .+..... +..-+|+..++|+.++... +........+...++ ...-..+..||+.+++
T Consensus 377 ~~W~~~~~mp--~~r~~~~------~~~~~g~IYviGG~~~~~~-~~~~~~~~~~~~~~~----~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 377 DKWKMLPDMP--IALSSYG------MCVLDQYIYIIGGRTEHID-YTSVHHMNSIDMEED----THSSNKVIRYDTVNNI 443 (557)
T ss_pred CeEEECCCCC--ccccccc------EEEECCEEEEEeCCCcccc-ccccccccccccccc----ccccceEEEECCCCCe
Confidence 7543322211 1111110 0122333322222221000 000000000000000 0001458889998887
Q ss_pred eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC----CEEEEEECCC---CeeEEeecCCCcEEEEEEcCC-EEEE
Q 002234 822 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSN---YNMVGSLPTLSEVRAMVVSSE-LVYL 893 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~---~~~~~~~~~~~~v~~l~~s~d-~l~s 893 (949)
...... +. +...-.+++...+..|+++|..+. ..+..||..+ +..+..++......+++...+ ..++
T Consensus 444 W~~v~~----m~-~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~ 518 (557)
T PHA02713 444 WETLPN----FW-TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMML 518 (557)
T ss_pred EeecCC----CC-cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEE
Confidence 653211 11 111122455566777766553221 2567899886 334444443333334444444 6778
Q ss_pred EECCC--eEEEEECCCCcEE
Q 002234 894 GCKGG--TVEIWDQKRQIRI 911 (949)
Q Consensus 894 gs~dg--~I~vwd~~~~~~~ 911 (949)
|+.+| ++..||..+.+-.
T Consensus 519 Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeecceeehhhcCccccccc
Confidence 88887 7888888876643
No 427
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.92 Score=49.39 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=115.0
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEEEeecCCCceee
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQN 758 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~v~~ 758 (949)
++.+--..+.|.-||..++. ...+. +.+.+.++..-..+..|+++.. -+.+++.+++.. ..........+.
T Consensus 39 L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~-- 110 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPL-- 110 (307)
T ss_pred EEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCc--
Confidence 45566667888889888762 23332 3333445444444555555443 267778766643 222221111111
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
..++.....|+|...+..... ++ .. .-..-.-|.++.+|. .+... +...++-..
T Consensus 111 --~r~ND~~v~pdG~~wfgt~~~-----~~-------~~-----~~~~~~~G~lyr~~p-~g~~~------~l~~~~~~~ 164 (307)
T COG3386 111 --NRPNDGVVDPDGRIWFGDMGY-----FD-------LG-----KSEERPTGSLYRVDP-DGGVV------RLLDDDLTI 164 (307)
T ss_pred --CCCCceeEcCCCCEEEeCCCc-----cc-------cC-----ccccCCcceEEEEcC-CCCEE------EeecCcEEe
Confidence 111222356666543222110 00 00 000011234555554 34443 223333455
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCC--CeeE-----Eeec-CCCcEEEEEEcCC-EEE-EEECCC-eEEEEECCC
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSN--YNMV-----GSLP-TLSEVRAMVVSSE-LVY-LGCKGG-TVEIWDQKR 907 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~--~~~~-----~~~~-~~~~v~~l~~s~d-~l~-sgs~dg-~I~vwd~~~ 907 (949)
-+.|+|+||+..+...-...+.|.-|++.. +..- ..+. ..+..-.++...+ .++ ++..+| .|.+|+.+
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 678999999976666654445787777652 1111 1111 2345556666666 444 444443 89999998
Q ss_pred CcEEEEeccccccceeEEEEe-CCCCEEEEEe
Q 002234 908 QIRIETLQTGTSGKVQCMALD-DNEEFLVIGT 938 (949)
Q Consensus 908 ~~~~~~l~~~h~~~I~~l~~s-pdg~~L~sgs 938 (949)
|+++..+.... ..+++++|- |+.+.|+..+
T Consensus 244 G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 244 GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CcEEEEEECCC-CCCccceEeCCCcCEEEEEe
Confidence 99888886433 578888884 4556555443
No 428
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.39 E-value=0.0017 Score=70.34 Aligned_cols=46 Identities=24% Similarity=0.528 Sum_probs=38.9
Q ss_pred CCcccCcCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv----~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
-+--.||+|++-|.+-| ++.|-|+|=-.|++.|.. .+||+||...+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 34457999999999887 469999999999999964 48999987666
No 429
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.39 E-value=0.17 Score=57.75 Aligned_cols=181 Identities=13% Similarity=0.037 Sum_probs=100.6
Q ss_pred eecCCCCceEEEEEeCC---EEEEE--eCC-CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEE-EeCCCcE-
Q 002234 663 VDSSENGKVLSIACFRD---KIFSG--HSD-GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS-GSLDKTA- 734 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d---~lasg--s~D-g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~S-gs~Dg~I- 734 (949)
.+......+..-.|+|+ ..... ... ..+.++|++++....+..+.++... -.|+|||+.|+- ...||..
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~---P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGA---PAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCC---ccCCCCCCEEEEEECCCCCcc
Confidence 33344556667778875 22221 222 4599999999966666666666554 579999987654 4557665
Q ss_pred -EEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--c
Q 002234 735 -RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--A 811 (949)
Q Consensus 735 -~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~ 811 (949)
.+.|+.++.... ..+...+.. .-.|+|||+.++.. .+..| .
T Consensus 264 iy~~dl~~~~~~~---Lt~~~gi~~------~Ps~spdG~~ivf~---------------------------Sdr~G~p~ 307 (425)
T COG0823 264 IYLMDLDGKNLPR---LTNGFGINT------SPSWSPDGSKIVFT---------------------------SDRGGRPQ 307 (425)
T ss_pred EEEEcCCCCccee---cccCCcccc------CccCCCCCCEEEEE---------------------------eCCCCCcc
Confidence 455666654222 111112211 12399999986433 33334 3
Q ss_pred EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE--EEEEECCCCeeEEeecCCCcEEEEEEcCC
Q 002234 812 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE 889 (949)
Q Consensus 812 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~--I~iwd~~~~~~~~~~~~~~~v~~l~~s~d 889 (949)
|.++|...+...... ..+ ..-..-.++||+.+++..+..++. |.+.|+.++...+.+.+......-.+.++
T Consensus 308 I~~~~~~g~~~~riT-----~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 308 IYLYDLEGSQVTRLT-----FSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred eEEECCCCCceeEee-----ccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCC
Confidence 555566655542211 111 111155678999998887754333 66666666554555554444444455555
No 430
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0019 Score=69.44 Aligned_cols=47 Identities=15% Similarity=0.500 Sum_probs=39.9
Q ss_pred ccCcCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 19 FVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 19 ~~Cpic~~~~~dP---v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
+.|-||++-+++= .+|||+|.|=..||..|+.+....||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 6999999998763 3579999999999999999865579999986554
No 431
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.00086 Score=49.78 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 19 FVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 19 ~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
-.|.||.+--.|.|+-.|||- .|+.|-.+-+...+..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 459999999999999999995 6999988855546779999997754
No 432
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0026 Score=63.20 Aligned_cols=53 Identities=17% Similarity=0.477 Sum_probs=45.8
Q ss_pred CCcccCcCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv----~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
...|.||+|.+.+.+.+ .-+|||.||..|.++.+.. ...||+|+.++...++|
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII 275 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence 37899999999998865 3399999999999997765 45999999999999886
No 433
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.33 E-value=0.29 Score=43.89 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=70.7
Q ss_pred EEEEEEe---C-CceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEE
Q 002234 839 VHALQVH---N-GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIET 913 (949)
Q Consensus 839 V~~l~~~---~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~ 913 (949)
|+++++. . +..-++.+|.| ..|++|+- ...+..+.....|+++.-.+. .++.+..+|+|-+|+. ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeee
Confidence 5666664 2 33567777777 49999974 467778887888888887665 8999999999999986 334555
Q ss_pred eccccccceeEEEEeC-C--C-CEEEEEeCCCcEEE
Q 002234 914 LQTGTSGKVQCMALDD-N--E-EFLVIGTSDGRIQA 945 (949)
Q Consensus 914 l~~~h~~~I~~l~~sp-d--g-~~L~sgs~Dg~I~i 945 (949)
.+..| .+.++.+.. + | .-|++|=++|.|-+
T Consensus 77 iKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 54333 466665543 3 2 36889989998753
No 434
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=1.8 Score=45.34 Aligned_cols=262 Identities=12% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCceEEEEEeCCEEEEEeCCCcEEEEecCCCcee-eeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 668 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 668 ~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~-~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
.+-+..+.++.++...+..+.-++|.|+.+.... .+..+. -.+.-.++.. .|++...+..|.-..+.|+.+.+...
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 4566778888898888888889999999876322 222222 1233344433 68899988866667789988765222
Q ss_pred EEe-ecCC-CceeeeeeccceEEEEeCCCEEEEEEecCeEEEec--------------CCCCceEEEEeCCEEEEEECCC
Q 002234 747 VQV-HDIK-DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--------------SSKYPKCLALVQGKVYCGCQDG 810 (949)
Q Consensus 747 ~~~-~~~~-~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~--------------~~~~v~~v~~~~~~l~sgs~Dg 810 (949)
+.. .... .....+. -.|++-.+..+++-+++.+ ....+.++..++++.+..-.+-
T Consensus 163 lagrya~~~~d~~~v~---------ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVA---------ISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE 233 (370)
T ss_pred eeeeeccCCCCceeEE---------EecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc
Confidence 221 1111 1123333 2344444444555555544 2346777777888877766777
Q ss_pred cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe---eEEeecC-CCcEEEEEE
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---MVGSLPT-LSEVRAMVV 886 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~---~~~~~~~-~~~v~~l~~ 886 (949)
-+.+-|..+.+....+.... ......++.+..+.+..|++-+. +-+.+-|+.+.. ....+.. ...-..+..
T Consensus 234 gvlivd~s~~ssp~~~gsye--t~~p~~~s~v~Vs~~~~Yvadga---~gl~~idisnp~spfl~ss~~t~g~~a~gi~a 308 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYE--TSNPVSISTVPVSGEYAYVADGA---KGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA 308 (370)
T ss_pred ceEEEecCCCCCceEeeccc--cCCcccccceecccceeeeeccc---cCceeEeccCCCCCchhccccCCCccccceEE
Confidence 77788877766544332110 01112233445566666665542 234444544322 2222222 224556666
Q ss_pred cCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 887 SSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 887 s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.+++..+..+ +-.+-|....+..... .+....+.+.+.+-+.+.+.+...+|-+.||+.
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~-~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKR-PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccc-cCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 66666666655 4455555443332222 233334455555556778899999999999985
No 435
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.23 E-value=2 Score=45.19 Aligned_cols=202 Identities=10% Similarity=0.077 Sum_probs=103.2
Q ss_pred eecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEeccc-CCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 663 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H-~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
.+.+-...++.++|+|+ +++.....+.|...+.. | +.++.+.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 44455667999999995 66777778888888875 5 345544322 34577888887887777766789999998
Q ss_pred CCCCe--eEE--EEeec------CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC
Q 002234 739 IGNEE--IHC--VQVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 808 (949)
Q Consensus 739 ~~~~~--~~~--~~~~~------~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~ 808 (949)
+.... ... ..... .+..+.. ++|.|.++. ++++-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EG-------la~D~~~~~----------------------------L~v~kE 137 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEG-------LAYDPKTNR----------------------------LFVAKE 137 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EE-------EEEETTTTE----------------------------EEEEEE
T ss_pred EeccccccchhhceEEecccccCCCcceEE-------EEEcCCCCE----------------------------EEEEeC
Confidence 84431 111 11110 1111222 225555444 444444
Q ss_pred CCcEEEEECCC---Cceeeeec--ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-C----
Q 002234 809 DGAIQEIDLAT---GTFATIQT--GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-L---- 878 (949)
Q Consensus 809 Dg~I~iwd~~~---~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~-~---- 878 (949)
..-..+|.+.. +....... ...........+.++.++|....+..-|..++.|..+| .+|+.+..+.- .
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG 216 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC
Confidence 43334443332 11111100 00111223356889999987655555555667999999 66777665541 1
Q ss_pred -----CcEEEEEEcCC-EEEEEECCCeEEEE
Q 002234 879 -----SEVRAMVVSSE-LVYLGCKGGTVEIW 903 (949)
Q Consensus 879 -----~~v~~l~~s~d-~l~sgs~dg~I~vw 903 (949)
...-.|+|.++ .++..++-+..++|
T Consensus 217 l~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 217 LSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp -SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 24778999988 67778877766665
No 436
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.16 E-value=0.13 Score=45.95 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=64.1
Q ss_pred cEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeC-CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEe
Q 002234 641 VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL 719 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~-d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fs 719 (949)
..|+.|+.|..||+|+-++.+.... -.+.|+++.... ..++.+-.+|||-+|+-... ++..+... .++++.+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiKSK~-~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIKSKN-QVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeeccCC-CeEEEEEE
Confidence 4899999999999999987655543 456677777766 49999999999999987543 44444333 36666654
Q ss_pred c-CC---CEEEEEeCCCcEE
Q 002234 720 Q-SG---EMLYSGSLDKTAR 735 (949)
Q Consensus 720 p-dg---~~L~Sgs~Dg~I~ 735 (949)
. ++ .-|++|-.+|.|-
T Consensus 90 D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCCCceEEEEEecCCeEE
Confidence 4 33 3688888888763
No 437
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0017 Score=65.31 Aligned_cols=55 Identities=22% Similarity=0.483 Sum_probs=45.1
Q ss_pred CCCcccCcCccccccCce----------ecCCCccccHHHHHHHHhcC-CCCCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPV----------TLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLP 69 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv----------~~~cghtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~~~ 69 (949)
--++-.|.+|++-+.+-| .++|+|.|=..||.-|.-.| .++||-|++.++.+.++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 346778999999887666 68999999999999998754 45899999888766664
No 438
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.14 Score=54.19 Aligned_cols=235 Identities=19% Similarity=0.236 Sum_probs=144.4
Q ss_pred cCCcHHHHHHHHhh---C----hhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhc
Q 002234 210 VESDVERIVALFKK---G----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIG 282 (949)
Q Consensus 210 ~~~~i~~l~~llk~---g----~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~ 282 (949)
..|+.++++-+++. + ...+-.+|-.|-...++...-+.+..+|.+|....++.-..+..-.--+.+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~A------- 174 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKA------- 174 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHH-------
Confidence 55666666655532 1 234555666666666666666666777777777644321111110000011
Q ss_pred CCcccccccchhhhcchhhHHHHHHhhh-cccH-HHHHHHHHHHHHhhhccCCch----------hhHhhhcCchhhHHH
Q 002234 283 DSEESIVSSIANTIVSSKVFESVISSLE-AEWA-EERIAAVGILLRCMQEDGKCR----------NSIADKAELAPVMES 350 (949)
Q Consensus 283 ~~~~~~~~~~~~~i~~~g~i~~l~~~l~-~~~~-~~~~~a~~~l~~~~~~~~~~r----------~~~~~~~~~~~l~~l 350 (949)
.-.+..|+--+...+.++.+.+.+. .|.- -.|+.-.. +|-|-.+++.| .+|++++....|+++
T Consensus 175 ---c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a--~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Ea 249 (461)
T KOG4199|consen 175 ---CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDA--IRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEA 249 (461)
T ss_pred ---HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHH--HHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHH
Confidence 1224467888888899998886665 3333 23333222 34444555443 678899988999999
Q ss_pred HHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccch-hHHHHHHhhhcc--cCCCC
Q 002234 351 FMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCP-VVAGLLLQLDLL--AEPRK 427 (949)
Q Consensus 351 l~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~-~~a~~l~~l~~l--~~~~~ 427 (949)
++.+-+..- -+.+...| .+-+-.+++.+.|.+.|++++ |+.++-.....+-- ++-..|-.|..| .+.-|
T Consensus 250 l~A~~dp~~--L~~l~~tl---~~lAVr~E~C~~I~e~GGl~t---l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvK 321 (461)
T KOG4199|consen 250 LQAGIDPDS--LVSLSTTL---KALAVRDEICKSIAESGGLDT---LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVK 321 (461)
T ss_pred HHccCCccH--HHHHHHHH---HHHHHHHHHHHHHHHccCHHH---HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchH
Confidence 998766322 12222333 333445689999999999966 89988775554444 666666666665 44567
Q ss_pred CCccHHHHHHHHHH-HhhcCCChHHHHHHHHHHHhcCc
Q 002234 428 MSIYREEAIDTLIS-CLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 428 ~~~~r~~~~~~l~~-~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
.-|.+.++.+.|+. +++|.+.|++-+++.-++..|.-
T Consensus 322 s~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L 359 (461)
T KOG4199|consen 322 STIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCL 359 (461)
T ss_pred HHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Confidence 77889999999888 67888888866556555555544
No 439
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.07 E-value=0.13 Score=62.35 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=95.1
Q ss_pred EEEEeCCCcEEEEecCCCceeeeEEecccCCC-EEEEEEecC-------CCEEEEEeCCCcEEEEECCCCeeEEEEeecC
Q 002234 681 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQS-------GEMLYSGSLDKTARVWSIGNEEIHCVQVHDI 752 (949)
Q Consensus 681 lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~-V~~v~fspd-------g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~ 752 (949)
|........++-.|++.| +.+..+.-|... |..+ .|+ +..-+.|-.+..+..||.+-.....+...
T Consensus 497 l~~~~~~~~ly~mDLe~G--KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-- 570 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERG--KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-- 570 (794)
T ss_pred eecCCCCCceEEEecCCC--cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc--
Confidence 334456678999999999 788888877654 5554 343 33456677778899999886321111100
Q ss_pred CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe-CCEEEEEECCCcEEEEECCCCceeeeeccccc
Q 002234 753 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 831 (949)
Q Consensus 753 ~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 831 (949)
.+.+.......|++.. .|+|++|+.+|.|++||- .|... ...
T Consensus 571 -------------------------------~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~A-----KT~ 613 (794)
T PF08553_consen 571 -------------------------------SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRA-----KTA 613 (794)
T ss_pred -------------------------------ccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhh-----hhc
Confidence 0112233344555555 478999999999999994 33322 145
Q ss_pred ccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 832 LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 832 ~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
+++-+.||..|..+.||.|++.++. +.+.+++.
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 6677899999999999999988874 37888875
No 440
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=1.6 Score=49.55 Aligned_cols=218 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred ccccccc-EEEEecCCCCeEEEecCCcee-eecCCCCceEEEEEeCC--EEEEEe---CCCcEEEEecCCCceeeeEEec
Q 002234 635 PLAFEMV-KVLSNGHDSSADFWNHRELVH-VDSSENGKVLSIACFRD--KIFSGH---SDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 635 ~~~~~~~-~l~s~s~dg~I~vWd~~~~~~-~~~~h~~~V~~l~~s~d--~lasgs---~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
.+.+.+. ..++...++.|.+.|...... ....-......++++++ .+..+. .++++.+.|..++ ..+.+..
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEEEe
Confidence 3444555 455555678899999652111 11111125677888875 333333 3789999999988 5665544
Q ss_pred ccCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
.-..+ ..++++|+|+.++... .+++|.+.|..+..... ........+...+....+.|+|..+.+....
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~----- 227 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG----- 227 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc-----
Confidence 33344 8899999999666555 78999999977653221 1111122222333445578888764332211
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
+.++.+...|..++....... ..+.. ....+.++|++.++......+..+.+-|.
T Consensus 228 --------------------~~~~~v~~id~~~~~v~~~~~----~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 228 --------------------SGSNNVLKIDTATGNVTATDL----PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred --------------------CCCceEEEEeCCCceEEEecc----ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 124688888888877664211 11111 34567888998888777555559999999
Q ss_pred CCCeeEEeecCC----CcEEEEEEcCC
Q 002234 867 SNYNMVGSLPTL----SEVRAMVVSSE 889 (949)
Q Consensus 867 ~~~~~~~~~~~~----~~v~~l~~s~d 889 (949)
.+......+... ..+..+++.+.
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 283 ATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCceeeeecccccccccceeccceee
Confidence 988888776632 23555555544
No 441
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0036 Score=65.23 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=42.5
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
.+|-.||||..---.+|..||||.-|+.||.+++-+. +.|-.|+.....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 3788999999998999999999999999999998773 489999876654
No 442
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.16 Score=61.44 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 002234 668 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 743 (949)
Q Consensus 668 ~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~ 743 (949)
...+.+.+.-.-.++.|+..|.|-..|..++ ..+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 4455555555568999999999999998875 12222323346899999999999999999999999999999975
No 443
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0043 Score=67.21 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=42.0
Q ss_pred CCCcccCcCccccccCce-----e---cCCCccccHHHHHHHHhcC------CCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPV-----T---LETGQTYERRAIQEWIERG------NSSCPITRQKLS 64 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv-----~---~~cghtfc~~ci~~~~~~~------~~~CP~c~~~~~ 64 (949)
.-++..|-||++...+++ . .+|-|+||-.||..|.... .+.||.||....
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 357999999999999998 3 4799999999999998533 258999998765
No 444
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.87 E-value=0.2 Score=63.39 Aligned_cols=245 Identities=18% Similarity=0.110 Sum_probs=129.6
Q ss_pred hhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHHhh
Q 002234 171 NGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD 246 (949)
Q Consensus 171 ~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~~~ 246 (949)
+.|++.|- +.++.|.+.|+..|.++. ....++.|+.+|+-. +..|+.+|..+.... .
T Consensus 624 ~~L~~~L~-D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------~ 684 (897)
T PRK13800 624 AELAPYLA-DPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------P 684 (897)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------C
Confidence 44555553 577889999999998773 234567788888655 456666665552100 0
Q ss_pred hhHHHHHHHHhccccchhc-----c--cCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHH
Q 002234 247 MMESLMTVIKKKEEDFLKM-----C--LKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIA 319 (949)
Q Consensus 247 ~~~~lv~~l~~~~~~~~~~-----~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~ 319 (949)
-.+.|...|...+. .++. + +..... .. +-+.+...+.........++.+.+..+.|...+...+.+.|..
T Consensus 685 ~~~~L~~~L~~~d~-~VR~~A~~aL~~~~~~~~-~~-l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 685 PAPALRDHLGSPDP-VVRAAALDVLRALRAGDA-AL-FAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIA 761 (897)
T ss_pred chHHHHHHhcCCCH-HHHHHHHHHHHhhccCCH-HH-HHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHH
Confidence 11344444443211 0000 0 000000 11 1123333333333334445555555667777777778888887
Q ss_pred HHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccc----------------cchhHHHHH
Q 002234 320 AVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR----------------RTFNEQILH 383 (949)
Q Consensus 320 a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r----------------~~~~~~~l~ 383 (949)
++..|...-..+ ...++.|+.+++......|..|+..|.++-.... |..+.+.|
T Consensus 762 aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL- 831 (897)
T PRK13800 762 VAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARAL- 831 (897)
T ss_pred HHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHH-
Confidence 777766441111 1124567777777777777777777755432110 11122222
Q ss_pred HhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 002234 384 IIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIV 460 (949)
Q Consensus 384 ~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 460 (949)
.+-++-..+..|+..|+...++=+.-|+..|..+. -.+.+.+.|..+|... ++.++..|++||-
T Consensus 832 --~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~----------~~~~a~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 832 --AGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP----------GDPAARDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred --HhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC----------CCHHHHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 22333344466666666665555556666665541 1235677777777744 5567777777774
No 445
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.84 E-value=0.12 Score=54.50 Aligned_cols=154 Identities=15% Similarity=0.074 Sum_probs=110.8
Q ss_pred hcchhhHHHHHHhhh-cccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccc
Q 002234 296 IVSSKVFESVISSLE-AEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR 374 (949)
Q Consensus 296 i~~~g~i~~l~~~l~-~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r 374 (949)
+.+.+.+..|+.+|+ +.++..++.|..+|.++ .+-...+..|.+.|.++.+..++...+.+.|..|+.+|.++.....
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 467788999999999 56788888888888876 5666889999999999999999999999999999999998855422
Q ss_pred cchhHHHHHHhhccCCchhHHHHHHHHhhcCCccch--hHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHH
Q 002234 375 RTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCP--VVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 452 (949)
Q Consensus 375 ~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~--~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~ 452 (949)
....|+. . ......-+.+.+.+... .+-++|.+|.+-.+.+. .+. ..+..++..|..|+. .+|
T Consensus 87 ------n~~~Ik~--~---i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~-~l~--~~i~~ll~LL~~G~~-~~k 151 (254)
T PF04826_consen 87 ------NQEQIKM--Y---IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH-MLA--NYIPDLLSLLSSGSE-KTK 151 (254)
T ss_pred ------hHHHHHH--H---HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh-hHH--hhHHHHHHHHHcCCh-HHH
Confidence 1222321 1 12222323334443333 34477888865444333 332 379999999999976 568
Q ss_pred HHHHHHHHhcCcc
Q 002234 453 LAAAKTIVSLQGR 465 (949)
Q Consensus 453 ~~~~~~l~~l~~~ 465 (949)
.++.++|+||+-.
T Consensus 152 ~~vLk~L~nLS~n 164 (254)
T PF04826_consen 152 VQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHHhccC
Confidence 8999999999764
No 446
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0045 Score=67.55 Aligned_cols=51 Identities=18% Similarity=0.401 Sum_probs=39.6
Q ss_pred CCCcccCcCcccccc-----------------CceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFD-----------------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~-----------------dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
+...-.|+||+.... +-+.+||.|.|-+.|+++|.+.-+..||+||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445567999987542 233469999999999999999555689999998864
No 447
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.82 E-value=3.4 Score=44.37 Aligned_cols=225 Identities=13% Similarity=0.136 Sum_probs=117.6
Q ss_pred EeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee--cCC
Q 002234 676 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH--DIK 753 (949)
Q Consensus 676 ~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~--~~~ 753 (949)
-..+.|+.|+.+| +.+++..... ...... +...|..+...|+-+.|+.-++ +++.++++..-........ ..+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3446899999999 8999983221 222222 3334999999998777777654 9999999876421110000 000
Q ss_pred C--ceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEE----EeCCEEEEEECCCcEEEEECCCCcee--ee
Q 002234 754 D--QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA----LVQGKVYCGCQDGAIQEIDLATGTFA--TI 825 (949)
Q Consensus 754 ~--~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~----~~~~~l~sgs~Dg~I~iwd~~~~~~~--~~ 825 (949)
. ....+. ..+.+..++ ..+...++......|.+|....+... ..
T Consensus 80 ~~~~~~~~~----------------------------~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~ 131 (275)
T PF00780_consen 80 SRSLPTKLP----------------------------ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL 131 (275)
T ss_pred ccccccccc----------------------------ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccce
Confidence 0 000000 011111111 11123344444558888777653111 01
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-------------CCcEEEEEEcCC-EE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------------LSEVRAMVVSSE-LV 891 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~s~d-~l 891 (949)
. +.+ .-...+.+++|.++...+++ . +...+.|+.++.....+.. ..++..+..+.+ ++
T Consensus 132 ~---ke~-~lp~~~~~i~~~~~~i~v~~--~--~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L 203 (275)
T PF00780_consen 132 L---KEI-SLPDPPSSIAFLGNKICVGT--S--KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFL 203 (275)
T ss_pred e---EEE-EcCCCcEEEEEeCCEEEEEe--C--CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEE
Confidence 0 111 12367899999955544443 2 3688899987665444321 123445555545 44
Q ss_pred EEEECCCeEEEEECCCCcEEE--EeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 892 YLGCKGGTVEIWDQKRQIRIE--TLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~~~~~~--~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++ . |..-.+.|. .|++.+ .+. =.....++++. ..+|+..+.+ .|.||++.
T Consensus 204 l~-~-~~~g~fv~~-~G~~~r~~~i~--W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~ 255 (275)
T PF00780_consen 204 LC-Y-DNIGVFVNK-NGEPSRKSTIQ--WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLE 255 (275)
T ss_pred EE-e-cceEEEEcC-CCCcCcccEEE--cCCchhEEEEE--CCEEEEECCC-EEEEEECc
Confidence 43 2 333333343 443332 222 12245666664 5688877765 49999873
No 448
>PHA02713 hypothetical protein; Provisional
Probab=95.80 E-value=0.77 Score=54.86 Aligned_cols=86 Identities=8% Similarity=0.055 Sum_probs=46.1
Q ss_pred EEEEEECCCCee--EEeecCCCcEEEEEEcCC-EEEEEECC------CeEEEEECCC-Cc--EEEEeccccccceeEEEE
Q 002234 860 AVKMWSTSNYNM--VGSLPTLSEVRAMVVSSE-LVYLGCKG------GTVEIWDQKR-QI--RIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 860 ~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~d-~l~sgs~d------g~I~vwd~~~-~~--~~~~l~~~h~~~I~~l~~ 927 (949)
.+..||..+.+- +..+.....-.+++...+ ..+.|+.+ ..+..||..+ .+ .+..+. ........+.+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~ 511 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH 511 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE
Confidence 577888776543 233322222223444444 44556543 2478899887 33 333332 12222223333
Q ss_pred eCCCCEEEEEeCCC--cEEEEeC
Q 002234 928 DDNEEFLVIGTSDG--RIQAWGL 948 (949)
Q Consensus 928 spdg~~L~sgs~Dg--~I~iWdl 948 (949)
+|+..++||.|| ++..||.
T Consensus 512 --~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 512 --DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred --CCEEEEEeeecceeehhhcCc
Confidence 688899999888 6666664
No 449
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.77 E-value=0.85 Score=54.41 Aligned_cols=216 Identities=17% Similarity=0.279 Sum_probs=112.7
Q ss_pred EEEEEeCC------CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC------CcEEEEECCCCeeEEE
Q 002234 680 KIFSGHSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCV 747 (949)
Q Consensus 680 ~lasgs~D------g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D------g~I~vWd~~~~~~~~~ 747 (949)
.++.||.+ .++..+|..++.+.....+... ..-.++++. +|...++||.| .++..||..++++...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 45556555 4688899998866666666533 233444444 56788889988 3456677776642221
Q ss_pred EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE-EEEEECCC-----cEEEEECCCCc
Q 002234 748 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQDG-----AIQEIDLATGT 821 (949)
Q Consensus 748 ~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~-l~sgs~Dg-----~I~iwd~~~~~ 821 (949)
.... .+-. . ..++..+|. .++|+.|| +|..||..+.+
T Consensus 365 a~M~--~~R~----------------~-------------------~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 365 APMN--TKRS----------------D-------------------FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCcc--Cccc----------------c-------------------ceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 1110 0000 0 111222222 45566665 47889988877
Q ss_pred eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC-----CEEEEEECCCCeeE--EeecCCCcEEEEEEcCC-EEEE
Q 002234 822 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG-----AAVKMWSTSNYNMV--GSLPTLSEVRAMVVSSE-LVYL 893 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg-----~~I~iwd~~~~~~~--~~~~~~~~v~~l~~s~d-~l~s 893 (949)
....-. +.. ...-..++...+..|++ ||.++ .++..||..++.-. ..+.....-..++.-.+ ..+.
T Consensus 408 W~~va~----m~~-~r~~~gv~~~~g~iYi~-GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvv 481 (571)
T KOG4441|consen 408 WTPVAP----MLT-RRSGHGVAVLGGKLYII-GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVV 481 (571)
T ss_pred ccccCC----CCc-ceeeeEEEEECCEEEEE-cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEE
Confidence 643211 111 11222333344444544 44333 36888998775533 33332222333555555 6666
Q ss_pred EECCC-----eEEEEECCCCcEEEEec-cccccceeEEEEeCCCCEEEEEeCCCc
Q 002234 894 GCKGG-----TVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGR 942 (949)
Q Consensus 894 gs~dg-----~I~vwd~~~~~~~~~l~-~~h~~~I~~l~~spdg~~L~sgs~Dg~ 942 (949)
|+.|+ +|..||..+.+....-. ......+....+ +++..++|+.||.
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 77665 47889988766333221 112222222222 5677888888875
No 450
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.62 E-value=3.6 Score=43.27 Aligned_cols=202 Identities=9% Similarity=0.042 Sum_probs=95.8
Q ss_pred EEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 704 QQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
+.+.+-.+.+..++|+|+++ +++.....+.|...+.+ |+..........+....+. +..++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~-------y~g~~---------- 76 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGIT-------YLGNG---------- 76 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEE-------E-STT----------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEE-------EECCC----------
Confidence 35556666799999999766 45555557778777764 4322111121122233333 33333
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCCCce-e-----eeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTF-A-----TIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~-~-----~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
.++... .++.+.++++..... + ..+.. .....+...+-.++|++.+..+..+-
T Consensus 77 -------------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 77 -------------------RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISL-GFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp -------------------EEEEEETTTTEEEEEEE----TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEEE
T ss_pred -------------------EEEEEEcCCCcEEEEEEeccccccchhhceEEec-ccccCCCcceEEEEEcCCCCEEEEEe
Confidence 333333 366677766632211 0 00110 01123446689999998644444443
Q ss_pred CCCCEEEEEECCC---CeeEEe-----ec----CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEe--cccc
Q 002234 856 LDGAAVKMWSTSN---YNMVGS-----LP----TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETL--QTGT 918 (949)
Q Consensus 856 ~Dg~~I~iwd~~~---~~~~~~-----~~----~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l--~~~h 918 (949)
.. .-..+|.+.. ...... +. ....+.++.++|. +++....+..|.++| .+|+++..+ ..+.
T Consensus 137 E~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~ 214 (248)
T PF06977_consen 137 ER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF 214 (248)
T ss_dssp ES-SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG
T ss_pred CC-CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc
Confidence 33 2455665543 111111 11 2356788999887 677777888999999 677766554 2222
Q ss_pred c------cceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 919 S------GKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 919 ~------~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
. ...-.|+|.++|+ |+..++-+..++|
T Consensus 215 ~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 215 HGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp GG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred cCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 1 2578899999996 4445566666655
No 451
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.59 E-value=4.9 Score=44.60 Aligned_cols=91 Identities=5% Similarity=-0.035 Sum_probs=40.7
Q ss_pred ccccccccEEEEecC-CCCeEEE--ecCC-ceeeecCCC-CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 634 SPLAFEMVKVLSNGH-DSSADFW--NHRE-LVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~-dg~I~vW--d~~~-~~~~~~~h~-~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
.++..||++|+.++. ||.-.+| |+.+ .+..+..+. ........+++ .++-...+.+++--|+.+.+.+.+..+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 445667876665544 6665555 4442 222222222 22224455564 444444556888889999855555555
Q ss_pred cccCCCEEEEEEe--cCCCEEE
Q 002234 707 REHTKAVTGLAIL--QSGEMLY 726 (949)
Q Consensus 707 ~~H~~~V~~v~fs--pdg~~L~ 726 (949)
....+-...|. .|+..++
T Consensus 121 --p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 121 --PDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp ---TTEEEEEEEEE-TTSSEEE
T ss_pred --CcccccccceeeCCCccEEE
Confidence 44455445554 3555544
No 452
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.50 E-value=0.015 Score=42.30 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=35.7
Q ss_pred ccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhh
Q 002234 290 SSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 328 (949)
Q Consensus 290 ~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~ 328 (949)
++++..+++.|++|+|+.+++.++.+.+..|+.+|.++.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999988764
No 453
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.50 E-value=0.011 Score=43.96 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=22.4
Q ss_pred CcCccccccCc--eec--CCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 002234 21 CPITTHIFDDP--VTL--ETGQTYERRAIQEWIERGNSSCPITRQKL 63 (949)
Q Consensus 21 Cpic~~~~~dP--v~~--~cghtfc~~ci~~~~~~~~~~CP~c~~~~ 63 (949)
||+|.+.|..- -.. +||+-.|+.|..+..+..+..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999888221 122 89999999999998876667999999875
No 454
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.012 Score=58.72 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCCCCcccCcCccccccCceecCCCccccHHHHHHHHh
Q 002234 13 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 50 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~ 50 (949)
..+-+.-.|.+|++.+.|||+.+-||.|||.||.+++-
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 34556668999999999999999999999999999763
No 455
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.22 E-value=1.2 Score=51.07 Aligned_cols=164 Identities=18% Similarity=0.214 Sum_probs=83.8
Q ss_pred EEEEecCCCCeEEE-ecCCce--eeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEE
Q 002234 642 KVLSNGHDSSADFW-NHRELV--HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 718 (949)
Q Consensus 642 ~l~s~s~dg~I~vW-d~~~~~--~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~f 718 (949)
.+++-..+++|.++ +.+... ..... ..+..+-. +..|...+. +.|.+||+.++ +.++.+... +|..|.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~-G~LL~~~~~-~~i~~yDw~~~--~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG-GNLLGVKSS-DFICFYDWETG--KLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE--SSSEEEEET-TEEEEE-TTT----EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC--cccceEEc-CcEEEEECC-CCEEEEEhhHc--ceeeEEecC--CCcEEEE
Confidence 34455557777775 333211 11111 12333333 445555544 48999999999 788888633 4899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC------------eeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 719 LQSGEMLYSGSLDKTARVWSIGNE------------EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 719 spdg~~L~Sgs~Dg~I~vWd~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
+++|++++-.+.| ++.+++.+.. ....+ ++....|.+..|..+...|+..+ .+.- ..+|...+
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~--~E~~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~~~ 227 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI--HEISERIKSGCWVEDCFIYTTSN-HLKY-LVNGETGI 227 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE--EEE-S--SEEEEETTEEEEE-TT-EEEE-EETTEEEE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE--EEecceeEEEEEEcCEEEEEcCC-eEEE-EEcCCcce
Confidence 9999999998876 6888876554 22222 22256777777777766666655 4444 44444433
Q ss_pred ecC-CCCceEEEEeC--CEEEEEECCCcEEEEECC
Q 002234 787 LNS-SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 787 ~~~-~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~ 818 (949)
..+ ...+.-+.+.+ ++++....|+.|..+.+.
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 332 44555556666 778888888888777664
No 456
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.21 E-value=0.054 Score=54.42 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=67.7
Q ss_pred ccEEEEecCCCCeEEEecC---CceeeecCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCCCceeeeEEecccC-CC
Q 002234 640 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA 712 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~ 712 (949)
+..++.|+.+|.|.+|++. ........-...|.++-... + +..+++.||.|+.|++.-+ +.+.....|+ .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCC
Confidence 5578899999999999987 22222223334444444433 3 8899999999999999887 5666666676 55
Q ss_pred EEEEEEecCCCEEEEE--eCCCcEEEEECCC
Q 002234 713 VTGLAILQSGEMLYSG--SLDKTARVWSIGN 741 (949)
Q Consensus 713 V~~v~fspdg~~L~Sg--s~Dg~I~vWd~~~ 741 (949)
+.....+..+..++++ |.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 5555555556666666 6667777777654
No 457
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.17 E-value=0.0057 Score=70.25 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=39.9
Q ss_pred CcccCcCccccccCcee---cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVT---LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~---~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
..-.||+|..-+.|-.+ .+|+|-||..||..|-... .+||.||..+....+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhheeee
Confidence 34568888888888765 3899999999999997764 499999988775443
No 458
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.15 E-value=11 Score=46.02 Aligned_cols=106 Identities=10% Similarity=0.125 Sum_probs=68.3
Q ss_pred CEEEEEEeCC-ceEEEEEE---------CCCCEEEEEECCCCeeEEee---cCCCcEEEEEEcCCEEEEEECCCeEEEEE
Q 002234 838 PVHALQVHNG-LVYTASTS---------LDGAAVKMWSTSNYNMVGSL---PTLSEVRAMVVSSELVYLGCKGGTVEIWD 904 (949)
Q Consensus 838 ~V~~l~~~~~-~~~l~s~s---------~Dg~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~d~l~sgs~dg~I~vwd 904 (949)
.+.+..|.+| +.+++.|. +..+.|.+|.....+.+... .-.+.+.++..-.+.+ .++-+..|++|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkl-lA~In~~vrLye 854 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKL-LAGINQSVRLYE 854 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeE-EEecCcEEEEEE
Confidence 4555568655 55555553 11236777776653333222 2345566665444433 344567899999
Q ss_pred CCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 905 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 905 ~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
..+.+.++.- ..|..++..+...-.|..++.|.--++|.+
T Consensus 855 ~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 855 WTTERELRIE-CNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ccccceehhh-hcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 9888666655 467778999999889999999987777655
No 459
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.13 E-value=0.0086 Score=63.55 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=41.1
Q ss_pred cCcCccccccCceecCCCccccHHHHHHHHhcC-CCCCCCCCCCCCCCC
Q 002234 20 VCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTK 67 (949)
Q Consensus 20 ~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~ 67 (949)
+|-||-+-=+|=-+-+|||-.|-.|+..|.... ..+||.||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 699999988887777999999999999998643 569999998876544
No 460
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.3 Score=54.74 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=96.9
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC--EE-----EEEeCCCcEEEEECCCCeeEEEEeecC
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--ML-----YSGSLDKTARVWSIGNEEIHCVQVHDI 752 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~--~L-----~Sgs~Dg~I~vWd~~~~~~~~~~~~~~ 752 (949)
++.++.....++--|++.| +.+.++.-|.+ |+-+.+.|+.+ .| +.|=.|..|.-||.+-.....+...+.
T Consensus 348 il~~~~~~~~l~klDIE~G--KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG--KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccc--eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 6667777788888999999 78888877766 88888888653 22 345557788889987532111111100
Q ss_pred CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe-CCEEEEEECCCcEEEEECCCCceeeeeccccc
Q 002234 753 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 831 (949)
Q Consensus 753 ~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 831 (949)
+ -|.....-.|.+.. +|++++|+.+|.|++||- .+.... ..
T Consensus 425 k--------------------------------qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-----TA 466 (644)
T KOG2395|consen 425 K--------------------------------QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-----TA 466 (644)
T ss_pred c--------------------------------ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-----hc
Confidence 0 01112223343333 478999999999999997 444332 45
Q ss_pred ccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 832 LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 832 ~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
+++-..+|..|..+.+|.++++.+. ..+.+-++
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t 499 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATCK--TYLLLIDT 499 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEecc--cEEEEEEE
Confidence 7788899999999999999888763 36777665
No 461
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.10 E-value=3.8 Score=44.63 Aligned_cols=210 Identities=10% Similarity=0.069 Sum_probs=110.7
Q ss_pred ccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEE-eCC-EEEEEeCCCcEEEEecCCCce-eeeEEec-cc-CCCEE
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIAC-FRD-KIFSGHSDGTIKVWTGRGSIL-HLIQQIR-EH-TKAVT 714 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~-s~d-~lasgs~Dg~I~vWd~~t~~~-~~i~~l~-~H-~~~V~ 714 (949)
+..+.+--..+.|.-|+..+.......+.+.+.++.. ..+ .|+++ ..| +.+++.+++.. ..+.... +. ...-+
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCC
Confidence 3356666677888888887543333444444454444 344 44444 333 56677766632 2222221 11 24456
Q ss_pred EEEEecCCCEEEEEeCC---------CcEEEEECC-CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 715 GLAILQSGEMLYSGSLD---------KTARVWSIG-NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 715 ~v~fspdg~~L~Sgs~D---------g~I~vWd~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.+...|+|.+-++.... ..=.+|-+. .+....+ +..--..++.++||||++.+....
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l--------~~~~~~~~NGla~SpDg~tly~aD----- 181 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL--------LDDDLTIPNGLAFSPDGKTLYVAD----- 181 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe--------ecCcEEecCceEECCCCCEEEEEe-----
Confidence 78888888866654430 011233332 2211111 111012345667889888654333
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC--CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
+..+.|+-|++.. +..... ..........+..-.++...++.+-+++..+|..|.
T Consensus 182 ----------------------T~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 182 ----------------------TPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred ----------------------CCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 2234555554431 111100 000111123355667788877777765555555899
Q ss_pred EEECCCCeeEEeecCC-CcEEEEEEcC
Q 002234 863 MWSTSNYNMVGSLPTL-SEVRAMVVSS 888 (949)
Q Consensus 863 iwd~~~~~~~~~~~~~-~~v~~l~~s~ 888 (949)
.|+.. ++.+..+.-. ..+++++|-.
T Consensus 239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EECCC-CcEEEEEECCCCCCccceEeC
Confidence 99998 9998888854 7888888865
No 462
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.09 E-value=0.51 Score=55.74 Aligned_cols=125 Identities=13% Similarity=0.133 Sum_probs=75.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~ 791 (949)
...-+.-+.-++.-+.-+...++.|||.+.+..+....+...+.|.++.+. +.|+|+.+...+..+.+.++....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt-----st~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT-----STPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee-----ecCCCCEEEEEEcCcEEEEEEccc
Confidence 344444444444444444456799999999876666666778899999854 678888877666666665553211
Q ss_pred CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC-CCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 792 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 792 ~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
. +++-.+-.-..|+-+|+ ..|+ .+|.+..|.++|.+++++ |+.+.|+|-.
T Consensus 106 ~--------dy~~~~p~w~~i~~i~i---------------~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~ 156 (631)
T PF12234_consen 106 Y--------DYTNKGPSWAPIRKIDI---------------SSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW 156 (631)
T ss_pred h--------hhhcCCcccceeEEEEe---------------ecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence 0 00000000001122222 2222 478899999999988877 4689998753
No 463
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.11 Score=59.45 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=76.7
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEE-EEEEcCC--EEEEEECCCeEEEEECCCCcEEE
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR-AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE 912 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~-~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~ 912 (949)
..+.-+.|+|....+|.+..+| .|-+..+. .+.+.+++ ++.+++ +++|.|| .+++|-.||+|++-|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~g-elli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKG-ELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCC-cEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4678899999999999998887 89999887 88888888 777777 9999999 79999999999999999998887
Q ss_pred EeccccccceeEEEEeC
Q 002234 913 TLQTGTSGKVQCMALDD 929 (949)
Q Consensus 913 ~l~~~h~~~I~~l~~sp 929 (949)
.....-...|.++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 74334455788888863
No 464
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.99 E-value=1.9 Score=48.21 Aligned_cols=203 Identities=10% Similarity=0.085 Sum_probs=88.8
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCe--eEEEEeecCCCce--eeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceE
Q 002234 721 SGEMLYSGS-LDKTARVWSIGNEE--IHCVQVHDIKDQI--QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 795 (949)
Q Consensus 721 dg~~L~Sgs-~Dg~I~vWd~~~~~--~~~~~~~~~~~~v--~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~ 795 (949)
+.++|+..+ ..+.|.|.|+.+.. .+..+..+...-. ..+. .+...-..|+|+.+++...+..
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s-~PHT~Hclp~G~imIS~lGd~~------------ 152 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLS-RPHTVHCLPDGRIMISALGDAD------------ 152 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EE-EEEEEEE-SS--EEEEEEEETT------------
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCC-CCceeeecCCccEEEEeccCCC------------
Confidence 456777777 57899999998542 3333333210000 0111 1112224566665544332210
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC------------------
Q 002234 796 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD------------------ 857 (949)
Q Consensus 796 v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------------------ 857 (949)
|..-|.+.++|-.+.+........ .+...--+.+-++|....++|....
T Consensus 153 ----------G~g~Ggf~llD~~tf~v~g~We~~---~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~ 219 (461)
T PF05694_consen 153 ----------GNGPGGFVLLDGETFEVKGRWEKD---RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGK 219 (461)
T ss_dssp ----------S-S--EEEEE-TTT--EEEE--SB----TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-
T ss_pred ----------CCCCCcEEEEcCccccccceeccC---CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccc
Confidence 112234555555544443222111 0112234566677877777776432
Q ss_pred -CCEEEEEECCCCeeEEeecCC---CcEEEEEEcC--C---EEEEEECCCeEEEEEC-CCCc----EEEEeccc------
Q 002234 858 -GAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSS--E---LVYLGCKGGTVEIWDQ-KRQI----RIETLQTG------ 917 (949)
Q Consensus 858 -g~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~--d---~l~sgs~dg~I~vwd~-~~~~----~~~~l~~~------ 917 (949)
|+++.+||..+.+.++++.-. ..+..+.|.. + .++.+.-.++|..|-. +.++ .+..+...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 469999999999999999833 3455677753 3 3444445555555544 4433 22222110
Q ss_pred --c--------ccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 002234 918 --T--------SGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 918 --h--------~~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl~ 949 (949)
. ..-|+.|.+|.|.++|+..+ -+|.|+.|||+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 0 23589999999999998776 58999999985
No 465
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.98 E-value=2.6 Score=50.41 Aligned_cols=203 Identities=13% Similarity=0.155 Sum_probs=109.2
Q ss_pred eeEEecccCCCEEEEEEecCCCEEEEEe------CCCcEEEE--ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC
Q 002234 702 LIQQIREHTKAVTGLAILQSGEMLYSGS------LDKTARVW--SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~~L~Sgs------~Dg~I~vW--d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~ 773 (949)
++....+....+.+.+++|||+.++..- .|+.-.+| +.... ...+. . ......- .|+|||+
T Consensus 341 pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt-~--g~~~t~P-------sWspDG~ 409 (591)
T PRK13616 341 PVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVL-E--GHSLTRP-------SWSLDAD 409 (591)
T ss_pred eCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeee-c--CCCCCCc-------eECCCCC
Confidence 3333334445788999999999887665 24444444 54222 12221 1 1112222 3999988
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
.+.+......+. .+......+.+.+.++..+... . .....|..+.|+||+..++.
T Consensus 410 ~lw~v~dg~~~~----------------~v~~~~~~gql~~~~vd~ge~~-------~--~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 410 AVWVVVDGNTVV----------------RVIRDPATGQLARTPVDASAVA-------S--RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred ceEEEecCcceE----------------EEeccCCCceEEEEeccCchhh-------h--ccCCCcCeEEECCCCCEEEE
Confidence 776554221110 0112223456666677665542 1 23457999999999998887
Q ss_pred EECCCCEEEE---EECCCCee-E---Eeec-C-CCcEEEEEEcCC-EEEEEECCCeEEEEECCC-CcEEEEecc-ccccc
Q 002234 854 TSLDGAAVKM---WSTSNYNM-V---GSLP-T-LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-QIRIETLQT-GTSGK 921 (949)
Q Consensus 854 ~s~Dg~~I~i---wd~~~~~~-~---~~~~-~-~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~-~~~~~~l~~-~h~~~ 921 (949)
.. +| .|.+ -....|.. + ..+. . ...+..+.|.++ .|+++..++...+|.+.- |.....+.. .....
T Consensus 465 i~-~g-~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~ 542 (591)
T PRK13616 465 II-GG-KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAP 542 (591)
T ss_pred EE-CC-EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCc
Confidence 66 34 7776 44344431 1 1122 1 233688999888 566666655555555432 222122111 12456
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEE
Q 002234 922 VQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 922 I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
+..++=+++ .++..+.+|.+.
T Consensus 543 v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 543 VVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEEEecCCc--eEEEEcCCceEE
Confidence 777777763 466666777544
No 466
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.011 Score=62.92 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=39.8
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
+.+.|....|-||.+-.++.+-+||||..| |+..... ...||+||+.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 346778889999999999999999999999 7665433 346999998764
No 467
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.95 E-value=8 Score=47.67 Aligned_cols=212 Identities=10% Similarity=0.079 Sum_probs=113.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeEEecccCCC--------EEEEEEec----------------CCCEEEEEeCCCc
Q 002234 678 RDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA--------VTGLAILQ----------------SGEMLYSGSLDKT 733 (949)
Q Consensus 678 ~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~--------V~~v~fsp----------------dg~~L~Sgs~Dg~ 733 (949)
.+.++.++.++.|.-.|..+| +.+..+..+... ...+.+.. .+..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 457777888888888898888 566665432211 11233321 3447888889999
Q ss_pred EEEEECCCCeeEEEEeecCCCceee-eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC----
Q 002234 734 ARVWSIGNEEIHCVQVHDIKDQIQN-LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ---- 808 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~---- 808 (949)
+.-.|.++|+.. ..+..++.+.- .... -.+.+.+ . .-..-.+.++.+++|+.
T Consensus 272 LiALDA~TGk~~--W~fg~~G~vdl~~~~g-----~~~~g~~-------------~---~ts~P~V~~g~VIvG~~v~d~ 328 (764)
T TIGR03074 272 LIALDADTGKLC--EDFGNNGTVDLTAGMG-----TTPPGYY-------------Y---PTSPPLVAGTTVVIGGRVADN 328 (764)
T ss_pred EEEEECCCCCEE--EEecCCCceeeecccC-----cCCCccc-------------c---cccCCEEECCEEEEEeccccc
Confidence 999999998522 11111221110 0000 0000000 0 00001122455666643
Q ss_pred ------CCcEEEEECCCCceeeeecccc-----------ccc-CCCCCEEEEEEeCCce--EEEEEE--C----------
Q 002234 809 ------DGAIQEIDLATGTFATIQTGHR-----------KLL-GKANPVHALQVHNGLV--YTASTS--L---------- 856 (949)
Q Consensus 809 ------Dg~I~iwd~~~~~~~~~~~~~~-----------~~~-~h~~~V~~l~~~~~~~--~l~s~s--~---------- 856 (949)
+|.|+-+|.++|+....+.... .+. +..+.-...+++++.. |+-++. .
T Consensus 329 ~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~ 408 (764)
T TIGR03074 329 YSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPA 408 (764)
T ss_pred ccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccC
Confidence 6889999999999886653210 000 0001012233443322 221110 0
Q ss_pred ---CCCEEEEEECCCCeeEEeecC-CCc-----------EEEEEE-cCC---EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 857 ---DGAAVKMWSTSNYNMVGSLPT-LSE-----------VRAMVV-SSE---LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 857 ---Dg~~I~iwd~~~~~~~~~~~~-~~~-----------v~~l~~-s~d---~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
-...|.-.|.++|+....++. +.. ...+.. ... .++.++++|.++++|.++|+.+...
T Consensus 409 ~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 409 DEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 013677788999998887762 111 122222 221 6888999999999999999988765
No 468
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=94.89 E-value=0.095 Score=64.93 Aligned_cols=225 Identities=14% Similarity=0.146 Sum_probs=118.1
Q ss_pred HHHhhcccCccceeeccccCCcHHHHHHHHhh-------ChhhHHHHHHhcCCChHHHHHhhhhHHHHHHHH--------
Q 002234 192 LLSELGSRDKSVIHTLTRVESDVERIVALFKK-------GLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIK-------- 256 (949)
Q Consensus 192 ~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~-------g~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~-------- 256 (949)
-+++|+ .+..-|. +.++.|-++.|+.+|-. .+..|-++|+++--+..+...-.+.--.|++|+
T Consensus 217 ~fLemS-ss~esCa-amR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~ 294 (2195)
T KOG2122|consen 217 TFLEMS-SSPESCA-AMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCET 294 (2195)
T ss_pred HHHHhc-cCchhhH-HHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 345663 3333443 34478878888877732 266788899999433222222222222223322
Q ss_pred ------hccccchhcccCchh-hHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhh
Q 002234 257 ------KKEEDFLKMCLKPKS-VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 329 (949)
Q Consensus 257 ------~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~ 329 (949)
.+..-........+- ||+..|- -++...|+|.++..+||+..+.++|..+..-.. .+.
T Consensus 295 ~~~~lqar~~~~apa~~~H~lcaA~~~lM------K~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhg---------p~t 359 (2195)
T KOG2122|consen 295 CWTWLQARGPAIAPASDEHQLCAALCTLM------KLSFDEEHRHAMNELGGLQAIAELLQVDHEMHG---------PET 359 (2195)
T ss_pred HHHHHHhcCCCCCCcccchhhHHHHHHHH------HhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcC---------CCC
Confidence 121111111112222 4444331 234556999999999999998887642211111 012
Q ss_pred ccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhc---cccchhHHHHHHhhccCCchhHHHHHHHHhhcCC
Q 002234 330 EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL---NRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANH 406 (949)
Q Consensus 330 ~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~ 406 (949)
.++.|++ -|-.|..+|.+|..- ++++ +.-..+| |..++..|-++++
T Consensus 360 nd~~~~a---------------------LRrYa~MALTNLTFGDv~NKa~--------LCs~rgf--MeavVAQL~s~pe 408 (2195)
T KOG2122|consen 360 NDGECNA---------------------LRRYAGMALTNLTFGDVANKAT--------LCSQRGF--MEAVVAQLISAPE 408 (2195)
T ss_pred CcHHHHH---------------------HHHHHHHHhhccccccccchhh--------hhhhhhH--HHHHHHHHhcChH
Confidence 2222221 122344556666542 2222 2223333 6778899999999
Q ss_pred ccchhHHHHHHhhhcccCCCCCCccHHHH-HHHHHH-HhhcCCChHHHHHHHHHHHhcCcc
Q 002234 407 DQCPVVAGLLLQLDLLAEPRKMSIYREEA-IDTLIS-CLRNSDYPAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 407 ~~~~~~a~~l~~l~~l~~~~~~~~~r~~~-~~~l~~-~l~~~~~~~~~~~~~~~l~~l~~~ 465 (949)
|-..+.|++|-+|+-=.|..-.-++||-+ |-+|.+ +|++...+..+ ....||-||.+|
T Consensus 409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLK-avLSALWNLSAH 468 (2195)
T KOG2122|consen 409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLK-AVLSALWNLSAH 468 (2195)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHH-HHHHHHhhhhhc
Confidence 99999999999997766665556667654 555555 34433322211 223445555444
No 469
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.85 E-value=9.6 Score=43.74 Aligned_cols=237 Identities=10% Similarity=0.088 Sum_probs=118.2
Q ss_pred cccccccccEEEEe-cCC----CCeEEEecCCceeeecC-CCCceEEEEEeCC---EEEEEeCC----------CcEEEE
Q 002234 633 YSPLAFEMVKVLSN-GHD----SSADFWNHRELVHVDSS-ENGKVLSIACFRD---KIFSGHSD----------GTIKVW 693 (949)
Q Consensus 633 ~~~~~~~~~~l~s~-s~d----g~I~vWd~~~~~~~~~~-h~~~V~~l~~s~d---~lasgs~D----------g~I~vW 693 (949)
...+++++++++.+ +.. ..++++|+.+...+... .......+.|.++ ++.+...+ ..|+.|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 45677889987754 222 46999999865333222 1112234999987 44444332 237888
Q ss_pred ecCCCceeeeEEecccCCC--EEEEEEecCCCEEEEEeCC----CcEEEEECCCC-----eeEEEEeecCCCceeeeeec
Q 002234 694 TGRGSILHLIQQIREHTKA--VTGLAILQSGEMLYSGSLD----KTARVWSIGNE-----EIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 694 d~~t~~~~~i~~l~~H~~~--V~~v~fspdg~~L~Sgs~D----g~I~vWd~~~~-----~~~~~~~~~~~~~v~~l~~~ 762 (949)
++.+....-...+.+.... ...+..++|+++++..+.. ..+.+-|...+ ....+... ..+....+.
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~-- 284 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVD-- 284 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEE--
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEE--
Confidence 8887743323444443332 6678899999987754432 33666677664 12222211 111111111
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE----ECCCcEEEEECCCCceeeeecccccccCCCC-
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG----CQDGAIQEIDLATGTFATIQTGHRKLLGKAN- 837 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~- 837 (949)
..|. .++.- ..++.|...++.+....... ..+..+..
T Consensus 285 -------~~~~----------------------------~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~---~~l~~~~~~ 326 (414)
T PF02897_consen 285 -------HHGD----------------------------RLYILTNDDAPNGRLVAVDLADPSPAEWW---TVLIPEDED 326 (414)
T ss_dssp -------EETT----------------------------EEEEEE-TT-TT-EEEEEETTSTSGGGEE---EEEE--SSS
T ss_pred -------ccCC----------------------------EEEEeeCCCCCCcEEEEecccccccccce---eEEcCCCCc
Confidence 1122 22221 23355666676665531000 12233333
Q ss_pred -CEEEEEEeCCceEEEEEECCC-CEEEEEECCCCeeEEeec--CCCcEEEEEEcCC----EEEEEEC--CCeEEEEECCC
Q 002234 838 -PVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE----LVYLGCK--GGTVEIWDQKR 907 (949)
Q Consensus 838 -~V~~l~~~~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d----~l~sgs~--dg~I~vwd~~~ 907 (949)
.+..+....+..++..- .++ ..|+++|+..+.....+. ..+.|..+...++ ++...|. -++++.||+.+
T Consensus 327 ~~l~~~~~~~~~Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 327 VSLEDVSLFKDYLVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEEEETTEEEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred eeEEEEEEECCEEEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 45566665555443333 332 478999998444444444 3444555544333 3333333 36888899988
Q ss_pred CcEE
Q 002234 908 QIRI 911 (949)
Q Consensus 908 ~~~~ 911 (949)
++..
T Consensus 406 ~~~~ 409 (414)
T PF02897_consen 406 GELT 409 (414)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8743
No 470
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=0.57 Score=48.65 Aligned_cols=209 Identities=15% Similarity=0.220 Sum_probs=108.0
Q ss_pred EEeCC--EEEEEeC-----CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE-ECCCCeeEE
Q 002234 675 ACFRD--KIFSGHS-----DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW-SIGNEEIHC 746 (949)
Q Consensus 675 ~~s~d--~lasgs~-----Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW-d~~~~~~~~ 746 (949)
.|||| +|+..-. -|.|-|||...+ ++.+.++..|.-.-..+.|.+||+.++.+.. -|..- |....+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~--- 193 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTE--- 193 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccc---
Confidence 57887 4444322 378999999854 5778888889888889999999998887643 24333 111100
Q ss_pred EEeecCCCceeeeeeccceEEEE-eCCCEEEEEEecCeEEEe--cCCCCceEEEEeC-CEEEEEECC-C-----cEEEEE
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFI-PQGAGIKVHLRNGKTKLL--NSSKYPKCLALVQ-GKVYCGCQD-G-----AIQEID 816 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fs-p~g~~l~~~~~~g~i~~~--~~~~~v~~v~~~~-~~l~sgs~D-g-----~I~iwd 816 (949)
+. +.++ .|+..... .+|+.+-- ..+- ...-.++.+...+ +.+++|+.- | ---+=-
T Consensus 194 lN-------ldsM--ePSlvlld~atG~liek------h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~ 258 (366)
T COG3490 194 LN-------LDSM--EPSLVLLDAATGNLIEK------HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGH 258 (366)
T ss_pred cc-------hhhc--CccEEEEeccccchhhh------ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceee
Confidence 00 0000 01111111 12221100 0000 0111223333321 233333210 0 000000
Q ss_pred CCCCceeeeecc-cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEE
Q 002234 817 LATGTFATIQTG-HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGC 895 (949)
Q Consensus 817 ~~~~~~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs 895 (949)
...++....+.. ..........|-+|+.+.+..+++..++.|+...+||..+|..+..-.- .....++.....+++.+
T Consensus 259 ~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-~daaGva~~~~gf~vss 337 (366)
T COG3490 259 FRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-PDAAGVAAAKGGFAVSS 337 (366)
T ss_pred ccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-cccccceeccCceEEec
Confidence 111222111110 1122223456888999988888888889999999999999987764431 12233444555778888
Q ss_pred CCCeEEEEEC
Q 002234 896 KGGTVEIWDQ 905 (949)
Q Consensus 896 ~dg~I~vwd~ 905 (949)
.+|.+..+.-
T Consensus 338 g~G~~~~~s~ 347 (366)
T COG3490 338 GQGRIIFYSR 347 (366)
T ss_pred CCceEEeccc
Confidence 8888887743
No 471
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.042 Score=55.17 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=44.8
Q ss_pred CCcccCcCccccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 002234 16 PKDFVCPITTHIFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 72 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~----~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 72 (949)
...|+|||.+-.|.+-.. -+|||.|....+++.- ...||+|++.+...+.|.-|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeC
Confidence 568999999999998654 4999999999998864 45899999999987764344
No 472
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.021 Score=58.87 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=38.5
Q ss_pred cCcCccc-cccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 20 VCPITTH-IFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 20 ~Cpic~~-~~~dPv~----~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
.||+|.. ...+|-+ -+|||+.|.+|.-.-+..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 4899874 3334432 29999999999999999999999999988875544
No 473
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.69 E-value=2.3 Score=50.84 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=96.4
Q ss_pred CCCceEEEEEeCC--EEEEEe------CCC--cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-CcEE
Q 002234 667 ENGKVLSIACFRD--KIFSGH------SDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-KTAR 735 (949)
Q Consensus 667 h~~~V~~l~~s~d--~lasgs------~Dg--~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-g~I~ 735 (949)
....+.+.+.+|+ .++..- .|+ .+.+++.... ......+. ..+.-.|+|||+.+++.+.. ..++
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecCC--CCCCceECCCCCceEEEecCcceEE
Confidence 3346788889986 333332 244 4555554332 22222332 37788999999988887643 1222
Q ss_pred EE-----------ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 736 VW-----------SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 736 vW-----------d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
+. +++.++... .....|..+. |+|||..++... ++.+.+- .+
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~-------wSpDG~RiA~i~-~g~v~Va---------------~V 475 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS----RVPGPISELQ-------LSRDGVRAAMII-GGKVYLA---------------VV 475 (591)
T ss_pred EeccCCCceEEEEeccCchhhh----ccCCCcCeEE-------ECCCCCEEEEEE-CCEEEEE---------------EE
Confidence 22 333332111 2244566666 999999876543 1211110 00
Q ss_pred EEECCCcEEEEECCCCceeeeecccccc-cCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC---CCc
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---LSE 880 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~---~~~ 880 (949)
.-..+|..++=+ . ..+ .+-...+.++.|.+++.+++.....+..+...++. |.....+.. ...
T Consensus 476 vr~~~G~~~l~~---~---------~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~ 542 (591)
T PRK13616 476 EQTEDGQYALTN---P---------REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAP 542 (591)
T ss_pred EeCCCCceeecc---c---------EEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCc
Confidence 112233222210 0 111 12223467899998887665443222234333443 222222232 466
Q ss_pred EEEEEEcCCEEEEEECCCeEEE
Q 002234 881 VRAMVVSSELVYLGCKGGTVEI 902 (949)
Q Consensus 881 v~~l~~s~d~l~sgs~dg~I~v 902 (949)
+..++-+++.++....+|.+.+
T Consensus 543 v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 543 VVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred eEEEecCCceEEEEcCCceEEe
Confidence 7778888777777777775544
No 474
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.65 E-value=0.32 Score=57.51 Aligned_cols=197 Identities=12% Similarity=0.126 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----------hhhHHHHHHhcCCChHHHHHhhhh----
Q 002234 183 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----------LLEAVVLIDLLRPSTRTLIEMDMM---- 248 (949)
Q Consensus 183 ~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----------~~~Aa~~l~~L~~~~~~~~~~~~~---- 248 (949)
..+..++..+|+|+++...+.++++.+-+|-|+.|+..++.- ++.+.++|.+|++.-+.-+.....
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 567889999999999988889999999999999999888632 678888999997543311111100
Q ss_pred -------------------------------------------------HHHHH----HHHhccccchhcccCchhhHHH
Q 002234 249 -------------------------------------------------ESLMT----VIKKKEEDFLKMCLKPKSVSVL 275 (949)
Q Consensus 249 -------------------------------------------------~~lv~----~l~~~~~~~~~~~~~~~~a~~~ 275 (949)
|.+|. +|.+..++ ..-.|+..
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~------~TlEasaG 541 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKND------NTLEASAG 541 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcch------HHHHHhhh
Confidence 11110 11111100 01133444
Q ss_pred HHHHHhcCCcccccccchhhh-cchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhc
Q 002234 276 LLGQMIGDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA 354 (949)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~i-~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~ 354 (949)
.| |-+++++--.....+..+ ..+.|+++|+++|++++......++++| +.|..+-..+..|. +.+++-|+..|...
T Consensus 542 aL-QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~L-rNls~d~rnk~lig-k~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 542 AL-QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGAL-RNLSRDIRNKELIG-KYAIPDLVRCLPGS 618 (717)
T ss_pred hH-hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHH-hhhccCchhhhhhh-cchHHHHHHhCcCC
Confidence 44 344454444444555555 8999999999999999999988777655 45578888888788 88999999999887
Q ss_pred CC-----cch-hHHHHHHHHhhhccccchhHHHHHHhhccCCchh
Q 002234 355 SD-----GER-FEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSS 393 (949)
Q Consensus 355 ~~-----~~~-~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~ 393 (949)
.. .+- ..+...|.|++.- ..+.-+.+-+.++++.
T Consensus 619 ~~~~~~sedtv~~vc~tl~niv~~-----~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 619 GPSTSLSEDTVRAVCHTLNNIVRK-----NVLNAKDLLEIKGIPK 658 (717)
T ss_pred CCCcCchHHHHHHHHHhHHHHHHH-----hHHHHHHHHhccChHH
Confidence 65 111 1235556666543 2233344555666654
No 475
>PHA03098 kelch-like protein; Provisional
Probab=94.65 E-value=1.7 Score=51.83 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCEEEEEeCCC------cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCe
Q 002234 678 RDKIFSGHSDG------TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEE 743 (949)
Q Consensus 678 ~d~lasgs~Dg------~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~ 743 (949)
...++.||.++ .+..||..++++..+..+.........+. -++...+.||.+ .++..||..+++
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 34666666542 57788888886544433332222222222 367777788765 245667776654
No 476
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.64 E-value=0.087 Score=52.96 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=83.0
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe-eEEeec-CCCc
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSE 880 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~ 880 (949)
+..-+.||.|.-++++.-+.... .-.-|... .....-..-+++++.+| .|.+|+..-.. ....+. ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-----se~~~~e~---~~v~~~~~~~~vG~~dg-~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-----SERFIDEG---QRVVTASAKLMVGTSDG-AVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-----hhhhhhcc---eeecccCceEEeecccc-eEEEecCCccchHHHhhhccccc
Confidence 44557788888888765443211 11111111 11122334456666776 99999876321 111122 2334
Q ss_pred EEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccc-cceeEEEEeCCCCEEEEE--eCCCcEEEEeC
Q 002234 881 VRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIG--TSDGRIQAWGL 948 (949)
Q Consensus 881 v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~-~~I~~l~~spdg~~L~sg--s~Dg~I~iWdl 948 (949)
+.++....+ +..+++.||.|+-|+..-++.+... .+|. .++.....+..+.+++.+ |.|..++.|++
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 444444332 7888999999999999988887777 4666 566666666667777777 78888888876
No 477
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.62 E-value=0.54 Score=51.74 Aligned_cols=197 Identities=11% Similarity=0.139 Sum_probs=111.1
Q ss_pred HhhhhhhhccC-CchhHHHHHHHHHHhhcccCccceeecccc---C--CcHHHHHHHHhhC----hhhHHHHHHhcC---
Q 002234 170 INGFVEILFNS-VDPRVLEATIFLLSELGSRDKSVIHTLTRV---E--SDVERIVALFKKG----LLEAVVLIDLLR--- 236 (949)
Q Consensus 170 ~~~l~~~l~~s-~~~~~~~~av~~L~~l~~~~~~~~~~i~~~---~--~~i~~l~~llk~g----~~~Aa~~l~~L~--- 236 (949)
..-|+.+|... .++++.++....+.+|...++.....+... + ....+++.++.++ ...|+..|..|-
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 34455555554 788999999999999987776544444431 1 1357777877776 667777777773
Q ss_pred CChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhh------
Q 002234 237 PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE------ 310 (949)
Q Consensus 237 ~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~------ 310 (949)
+...+....+.++.++..|++....... .-...++-.|..| ....+.|..+++.|+++.|+.+++
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~---~~~~~av~~L~~L------L~~~~~R~~f~~~~~v~~l~~iL~~~~~~~ 207 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDS---ELQYIAVQCLQNL------LRSKEYRQVFWKSNGVSPLFDILRKQATNS 207 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH------HHHHHHHHHH------HTSHHHHHHHHTHHHHHHHHHHHH------
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCc---chHHHHHHHHHHH------hCcchhHHHHHhcCcHHHHHHHHHhhcccC
Confidence 2223333346679999999873211000 0013355555555 455689999999999999999992
Q ss_pred cccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchh--HHHHHHHHhhhccccc
Q 002234 311 AEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERF--EIVCFLSELVKLNRRT 376 (949)
Q Consensus 311 ~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~~l~~l~~~~r~~ 376 (949)
++..-|=.=-+...+=++-.+......+.+..-++.++++++... ++|. -++..|.+|+..++..
T Consensus 208 ~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 208 NSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ---HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTT
T ss_pred CCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHH
Confidence 222222111122223345666667777777777777777766654 3344 3577788887665543
No 478
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.61 E-value=0.034 Score=45.20 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=32.6
Q ss_pred cCcCcccccc----Cceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 20 VCPITTHIFD----DPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 20 ~Cpic~~~~~----dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
.||-|+.=|. -||.- -|.|.|=-.||.+|++.++ .||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeE
Confidence 4555555331 24444 7999999999999999844 8999998764
No 479
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.42 Score=52.82 Aligned_cols=250 Identities=16% Similarity=0.223 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhCh---hhHH-HHHHhcCCChHHHHHhhh---hHHHHHHH
Q 002234 183 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL---LEAV-VLIDLLRPSTRTLIEMDM---MESLMTVI 255 (949)
Q Consensus 183 ~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~---~~Aa-~~l~~L~~~~~~~~~~~~---~~~lv~~l 255 (949)
+|+.++|++.|+||+-.-+ +-.+ .++..-+.-||..|...+ ..+. ..|-.|+-..+|+..|+. +.-|+.++
T Consensus 277 eqLLrva~ylLlNlAed~~-~ElK-MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDIS-VELK-MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHHHhhhhh-HHHH-HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhc
Confidence 5778999999999964311 0001 112223346667775542 2222 245556666666665554 47777776
Q ss_pred HhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCch
Q 002234 256 KKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR 335 (949)
Q Consensus 256 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r 335 (949)
.....+-. .+.+.++ |+++.....+..++..|-+|.|+..+.+++-.+ .|+.+|- .+..++..+
T Consensus 355 p~~h~dL~-------~~tl~Ll------fNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~--iA~~~lY-h~S~dD~~K 418 (791)
T KOG1222|consen 355 PIQHPDLR-------KATLMLL------FNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHG--IALNMLY-HLSCDDDAK 418 (791)
T ss_pred CCCCHHHH-------HHHHHHh------hhccccccccHHHhhccchHHHHHHhCCcccch--hhhhhhh-hhccCcHHH
Confidence 55433321 1223333 778889999999999999999999997766544 3444433 345688889
Q ss_pred hhHhhhcCchhhHHHHHhcCCcchhHH-HHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHH
Q 002234 336 NSIADKAELAPVMESFMAASDGERFEI-VCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAG 414 (949)
Q Consensus 336 ~~~~~~~~~~~l~~ll~~~~~~~~~~~-~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~ 414 (949)
.|.+....++-++.-+-+++...-..+ +.+-.+| +++||.. +.+.++.+. |.|+.- +-.-+-++.-.
T Consensus 419 ~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl-~lnkRNa-----QlvceGqgL---~~LM~r---a~k~~D~lLmK 486 (791)
T KOG1222|consen 419 AMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINL-CLNKRNA-----QLVCEGQGL---DLLMER---AIKSRDLLLMK 486 (791)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH-Hhccccc-----eEEecCcch---HHHHHH---HhcccchHHHH
Confidence 999999999999886666655544334 4444555 4445431 113333233 222221 11222233222
Q ss_pred HHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 415 LLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 415 ~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
++-.++.=+.+++ ..|- .=|..|++-+.+.+...-...+.-+|.||.-
T Consensus 487 ~vRniSqHeg~tq-n~Fi-dyvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 487 VVRNISQHEGATQ-NMFI-DYVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred HHHHhhhccchHH-HHHH-HHHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 3322222111111 0000 1245566666665555555566777777654
No 480
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.56 E-value=0.013 Score=70.04 Aligned_cols=49 Identities=24% Similarity=0.491 Sum_probs=41.1
Q ss_pred ccCcCccccccCceecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCCCCC
Q 002234 19 FVCPITTHIFDDPVTLETGQTYERRAIQEWIER-GNSSCPITRQKLSSTKL 68 (949)
Q Consensus 19 ~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~-~~~~CP~c~~~~~~~~~ 68 (949)
+.|+||.+ ..+||++.|||.||+.|+...++. ....||.|+..+....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 889999999999999999996664 33479999887765444
No 481
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.014 Score=46.99 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=38.3
Q ss_pred CCCcccCcCccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDD-PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLS 64 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~d-Pv~~-~cghtfc~~ci~~~~~~~--~~~CP~c~~~~~ 64 (949)
+|-+-.||-|.-.=.| |.++ -|-|.|=..||.+|++.. ...||.||+...
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3445567777766666 6666 899999999999999853 347999998764
No 482
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.47 E-value=7 Score=47.62 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=85.0
Q ss_pred eCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE--CCCCeeEEeec
Q 002234 799 VQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS--TSNYNMVGSLP 876 (949)
Q Consensus 799 ~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd--~~~~~~~~~~~ 876 (949)
-++++++ +-+..|++|+..+++.+ +.-..|..++..+...-.+..++.+..-+ .+.+-. -..|.....-.
T Consensus 838 fngkllA-~In~~vrLye~t~~~eL------r~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~~~eg~f~evAr 909 (1096)
T KOG1897|consen 838 FNGKLLA-GINQSVRLYEWTTEREL------RIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYKGDEGNFEEVAR 909 (1096)
T ss_pred hCCeEEE-ecCcEEEEEEcccccee------hhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEeccCCceEEeeh
Confidence 3444444 45678999999988666 45566778899998887777777775443 454443 33333333222
Q ss_pred --CCCcEEEEEEcCC-EEEEEECCCeEEEEECCC-------------------CcEEEEeccccccceeEE--EEeCCCC
Q 002234 877 --TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-------------------QIRIETLQTGTSGKVQCM--ALDDNEE 932 (949)
Q Consensus 877 --~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~-------------------~~~~~~l~~~h~~~I~~l--~~spdg~ 932 (949)
+..+++++.+-.+ .++.+..+|.+.+-..++ |+.+..+ .|..-|.+. ..+|-+.
T Consensus 910 D~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f--~hg~lv~~~~~s~~~~~~ 987 (1096)
T KOG1897|consen 910 DYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF--RHGSLVMQLGDSMIPLEP 987 (1096)
T ss_pred hhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee--eecceEeeccccccCCCC
Confidence 5677888877555 666666778777765442 2223333 244444441 2345556
Q ss_pred EEEEEeCCCcEEE
Q 002234 933 FLVIGTSDGRIQA 945 (949)
Q Consensus 933 ~L~sgs~Dg~I~i 945 (949)
.+..|+.+|.|-+
T Consensus 988 ~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 988 KVLFGTVNGSIGI 1000 (1096)
T ss_pred cEEEEEccceEEE
Confidence 6888999998864
No 483
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.43 E-value=0.021 Score=43.35 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=37.9
Q ss_pred CcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 67 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 67 (949)
.+..|-.|...-...++++|||..|+.|..-+ ...-||.|+.++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 34557788888888999999999999996643 3447999999987654
No 484
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.41 E-value=12 Score=43.35 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=70.2
Q ss_pred cCCCCceEEEEEeC----C--EEEEEeCCCcEEEEecC-----CCceeeeEEecccCC--C--EEEEEEecCCCEEEEEe
Q 002234 665 SSENGKVLSIACFR----D--KIFSGHSDGTIKVWTGR-----GSILHLIQQIREHTK--A--VTGLAILQSGEMLYSGS 729 (949)
Q Consensus 665 ~~h~~~V~~l~~s~----d--~lasgs~Dg~I~vWd~~-----t~~~~~i~~l~~H~~--~--V~~v~fspdg~~L~Sgs 729 (949)
.|.-..|..+.|.| + .+........|.||.+. ++++-.-++- +... + -..+.|+|....|+.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtc-Ei~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTC-EIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeee-eccCCcccCCCcccccCCCceEEEEe
Confidence 35556799999998 2 55566667889999875 2211111111 1111 1 13466899888776655
Q ss_pred CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec-CeEEEec
Q 002234 730 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLN 788 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~-g~i~~~~ 788 (949)
....-.+.++.....+........+.|.+-. |..||+.++++..+ -+..+||
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCAC-------WT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCAC-------WTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCceEEEEE-------ecCcCCEEEEEeCCeEEEEEec
Confidence 5444446666655434444445566777654 99999998877655 3345665
No 485
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.32 E-value=9.8 Score=41.54 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=88.2
Q ss_pred CEEEEEeCCCcEEEEecC-CCceeeeE--EecccCCCE-EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCC
Q 002234 679 DKIFSGHSDGTIKVWTGR-GSILHLIQ--QIREHTKAV-TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD 754 (949)
Q Consensus 679 d~lasgs~Dg~I~vWd~~-t~~~~~i~--~l~~H~~~V-~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 754 (949)
+.+.+-+.||++.-..+. .|+..... .|..-.+++ ..-.+...+..++-.+.+|.|+--|+.............-.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 588899999999998887 44221111 111112222 22334445555666788888888888776533332221100
Q ss_pred ceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE--------CCC--cEEEEECCCCceee
Q 002234 755 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC--------QDG--AIQEIDLATGTFAT 824 (949)
Q Consensus 755 ~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs--------~Dg--~I~iwd~~~~~~~~ 824 (949)
.. .....|-|.|-.++..... .++|++-- .|+ .|-+||+.+++.+.
T Consensus 228 ~~------e~~~~WrPGG~Q~~A~~~~------------------~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~ 283 (342)
T PF06433_consen 228 DA------EKADGWRPGGWQLIAYHAA------------------SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA 283 (342)
T ss_dssp HH------HHHTTEEE-SSS-EEEETT------------------TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE
T ss_pred cc------ccccCcCCcceeeeeeccc------------------cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE
Confidence 00 0001155555443322211 12222211 112 36677999998885
Q ss_pred eecccccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCCeeEEeecC
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLPT 877 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~~~~~~~~~ 877 (949)
..... .++.+|.++.+.. ++.+.+..++.+.+||..+|+.++++..
T Consensus 284 Ri~l~-------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 284 RIPLE-------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEE-------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEeCC-------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 43321 3577899986544 5555554445999999999999999874
No 486
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.32 E-value=0.038 Score=56.15 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=36.7
Q ss_pred CcccCcCccccccCceec-CCCccccHHHHHHHHhc-CCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPITR 60 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~-~~~~CP~c~ 60 (949)
=+++|||+.....+||+- .|||.|.|..|+..+.. ....||+=+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 367999999999999975 99999999999998764 234699833
No 487
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.17 E-value=0.13 Score=60.61 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=110.4
Q ss_pred hchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccC----ccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhc
Q 002234 164 LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD----KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLL 235 (949)
Q Consensus 164 l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~----~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L 235 (949)
+-+|.|+..-+.+|-.+.+..+.|++.-+|=+|...+ ..++..+.++...+++|+.+|+.+ +..++.+|-+|
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 5567788888889999999999999999999997653 446667767889999999999998 56777899999
Q ss_pred CCChHHHHHhh--hhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhccc
Q 002234 236 RPSTRTLIEMD--MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW 313 (949)
Q Consensus 236 ~~~~~~~~~~~--~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~ 313 (949)
+....|+..|+ .+|-||+.|..+.... .+.-..-.+..+.|..++ ..+..|++.+...+|++.|+-+.++ .
T Consensus 594 s~d~rnk~ligk~a~~~lv~~Lp~~~~~~-~~sedtv~~vc~tl~niv-----~~~~~nAkdl~~~~g~~kL~~I~~s-~ 666 (717)
T KOG1048|consen 594 SRDIRNKELIGKYAIPDLVRCLPGSGPST-SLSEDTVRAVCHTLNNIV-----RKNVLNAKDLLEIKGIPKLRLISKS-Q 666 (717)
T ss_pred ccCchhhhhhhcchHHHHHHhCcCCCCCc-CchHHHHHHHHHhHHHHH-----HHhHHHHHHHHhccChHHHHHHhcc-c
Confidence 98888888887 4499999999875310 000011123444444442 3456899999999999999999987 4
Q ss_pred HHHHH
Q 002234 314 AEERI 318 (949)
Q Consensus 314 ~~~~~ 318 (949)
...|+
T Consensus 667 ~S~k~ 671 (717)
T KOG1048|consen 667 HSPKE 671 (717)
T ss_pred CCHHH
Confidence 44343
No 488
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.11 E-value=3.6 Score=48.49 Aligned_cols=195 Identities=13% Similarity=0.204 Sum_probs=123.7
Q ss_pred hhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHH
Q 002234 245 MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 324 (949)
Q Consensus 245 ~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l 324 (949)
.+.++.++..|...... -..+|.-+|..| +.+..+...+...+.+..|..++...+...|.++-.++
T Consensus 118 ~~l~~~i~~~L~~~d~~-------Va~~A~~~L~~l------~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~ 184 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLS-------VAKAAIKALKKL------ASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELL 184 (503)
T ss_pred ccHHHHHHHHHcCCcHH-------HHHHHHHHHHHH------hCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHH
Confidence 34447777777665321 122234444433 44556677788888899999999887888888899999
Q ss_pred HHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhc
Q 002234 325 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA 404 (949)
Q Consensus 325 ~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~ 404 (949)
..+...+.....++...|-++.++..|.+..--.|.+|++.|.+|...+ .. ++-+.+.|.++. |...++..
T Consensus 185 v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~---~g---~~yL~~~gi~~~---L~~~l~~~ 255 (503)
T PF10508_consen 185 VEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP---HG---LQYLEQQGIFDK---LSNLLQDS 255 (503)
T ss_pred HHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh---hH---HHHHHhCCHHHH---HHHHHhcc
Confidence 9998888999999999999999999888866677899999999997732 12 344566676655 34444333
Q ss_pred CCcc---chhHHHHHHhhhcccCCCCCCccHHHHHHHHHH----HhhcCCChHHHHHHHHHHHhcCc
Q 002234 405 NHDQ---CPVVAGLLLQLDLLAEPRKMSIYREEAIDTLIS----CLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 405 ~~~~---~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~----~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
..+. ..+.-+.+.+...+....-..+ -+....+++ .+..+| +..+.-|-++++.+|.
T Consensus 256 ~~dp~~~~~~l~g~~~f~g~la~~~~~~v--~~~~p~~~~~l~~~~~s~d-~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 256 EEDPRLSSLLLPGRMKFFGNLARVSPQEV--LELYPAFLERLFSMLESQD-PTIREVAFDTLGQIGS 319 (503)
T ss_pred ccCCcccchhhhhHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHhC
Confidence 2222 2244555555544432110011 122333433 333343 3446677889999874
No 489
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.11 E-value=0.056 Score=41.14 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=23.5
Q ss_pred cccCcCccccccCceec-CCCccc--cHHHHHH-HHhcCCCCCCCCCCC
Q 002234 18 DFVCPITTHIFDDPVTL-ETGQTY--ERRAIQE-WIERGNSSCPITRQK 62 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~~-~cghtf--c~~ci~~-~~~~~~~~CP~c~~~ 62 (949)
.+.|||+...|+-||.- .|-|.- +-...-+ ....+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 37899999999999975 999984 4433333 333444579999864
No 490
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=94.02 E-value=0.47 Score=59.20 Aligned_cols=187 Identities=17% Similarity=0.099 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhChh----hHHHHHHhcC-----CChHHHHHhhhhHHHHH
Q 002234 183 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLL----EAVVLIDLLR-----PSTRTLIEMDMMESLMT 253 (949)
Q Consensus 183 ~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~~----~Aa~~l~~L~-----~~~~~~~~~~~~~~lv~ 253 (949)
..+.+++..+|.||..-+..++..+...+|.+.++|+-|+.... --|.+|-+|+ ..++-+..++-+-+|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 46689999999999888999999999999999999999998843 3456888886 23333445555555555
Q ss_pred HH-HhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhc-chhhHHHHHHhhh----cccHHHHHHHHHHHH--
Q 002234 254 VI-KKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIV-SSKVFESVISSLE----AEWAEERIAAVGILL-- 325 (949)
Q Consensus 254 ~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~i~~l~~~l~----~~~~~~~~~a~~~l~-- 325 (949)
.. +..+|-.++. --.|+-.| .+...+|.+.|- --|++.+||++|- +.+...=+.|.+||-
T Consensus 445 ~al~~~kEsTLKa----vLSALWNL--------SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 445 CALRNKKESTLKA----VLSALWNL--------SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred HHHHhcccchHHH----HHHHHhhh--------hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 43 3333322211 11233333 255567776664 4588899999996 446666677777773
Q ss_pred -HhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHH
Q 002234 326 -RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILH 383 (949)
Q Consensus 326 -~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~ 383 (949)
..+..+..||..+.++..++-|++.|.+.+=-.=.++.-.|-+|. .|.....|+|-
T Consensus 513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS--AR~p~DQq~Lw 569 (2195)
T KOG2122|consen 513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS--ARSPEDQQMLW 569 (2195)
T ss_pred HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh--cCCHHHHHHHH
Confidence 567778888888888999999999888865444445556666663 34444444443
No 491
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.99 E-value=0.035 Score=57.83 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=39.7
Q ss_pred CCcccCcCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv----~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
++|+ ||+|.+.|.--= --+||...|+.|.....+.-+..||.||...+.+.+
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 4444 999999886321 238999999999887555446689999999987765
No 492
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.94 E-value=12 Score=41.37 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=43.2
Q ss_pred eecCCCcEEEEEEcCC---------EEEEEECCCeEEEEECCCCcEE---EEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 874 SLPTLSEVRAMVVSSE---------LVYLGCKGGTVEIWDQKRQIRI---ETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 874 ~~~~~~~v~~l~~s~d---------~l~sgs~dg~I~vwd~~~~~~~---~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
.+.++..+..+.|... ++++.-..+.|...+++.+..+ ..+.......+..+++.|||.+.++.+.+|
T Consensus 248 ~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 248 AYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp EETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred eecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence 3445566777777522 3444444567888877655322 222234445899999999999998888899
Q ss_pred cEE
Q 002234 942 RIQ 944 (949)
Q Consensus 942 ~I~ 944 (949)
.|.
T Consensus 328 ~iy 330 (331)
T PF07995_consen 328 KIY 330 (331)
T ss_dssp TEE
T ss_pred eEe
Confidence 874
No 493
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.044 Score=59.26 Aligned_cols=46 Identities=24% Similarity=0.549 Sum_probs=38.8
Q ss_pred CcccCcCccccccC---ceecCCCccccHHHHHHHHhcCC--CCCCCCCCC
Q 002234 17 KDFVCPITTHIFDD---PVTLETGQTYERRAIQEWIERGN--SSCPITRQK 62 (949)
Q Consensus 17 ~~~~Cpic~~~~~d---Pv~~~cghtfc~~ci~~~~~~~~--~~CP~c~~~ 62 (949)
.-|.|||..+--.| |+.+.|||.-|+..+.+-...|. ..||-|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 45799999988776 99999999999999999877776 579999543
No 494
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=1.4 Score=47.75 Aligned_cols=188 Identities=11% Similarity=0.100 Sum_probs=117.9
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCc
Q 002234 134 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 213 (949)
Q Consensus 134 s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~ 213 (949)
+..+++.++++-.+..+...-+.--. +.+-+.+..++. .+.+.+..+.+.|..++...+..|+.+-..+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAnd----l~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~----- 163 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNAND----LISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVI----- 163 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHh----HhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-----
Confidence 45567778888888887755442111 233222233333 44467888899999999988777664433333
Q ss_pred HHHHHHHHhhChhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccch
Q 002234 214 VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIA 293 (949)
Q Consensus 214 i~~l~~llk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (949)
.-+.++.|+..|...... +....|++.+..|+--+ .-.-
T Consensus 164 ------------------------------E~~~L~~Ll~~ls~~~~~------~~r~kaL~AissLIRn~-----~~g~ 202 (342)
T KOG2160|consen 164 ------------------------------ELGALSKLLKILSSDDPN------TVRTKALFAISSLIRNN-----KPGQ 202 (342)
T ss_pred ------------------------------HcccHHHHHHHHccCCCc------hHHHHHHHHHHHHHhcC-----cHHH
Confidence 333345555555532211 22333444444332211 2334
Q ss_pred hhhcchhhHHHHHHhhhcc--cHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhh
Q 002234 294 NTIVSSKVFESVISSLEAE--WAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK 371 (949)
Q Consensus 294 ~~i~~~g~i~~l~~~l~~~--~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~ 371 (949)
.+..+.+|..+|..+++++ +..-|.-|+.++..+++.+.+-+..+...+-...++.+........++.++.++.+++.
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 4566778999999999985 45556777777778888888877766666666777777777888889988877777766
Q ss_pred c
Q 002234 372 L 372 (949)
Q Consensus 372 ~ 372 (949)
.
T Consensus 283 ~ 283 (342)
T KOG2160|consen 283 E 283 (342)
T ss_pred H
Confidence 4
No 495
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.013 Score=59.87 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=34.6
Q ss_pred CcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
.+.+|-||++.-.|-|.|+|||. -|..|=.+ -..||+||+.+-
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 38899999999999999999996 47777332 127999998754
No 496
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=0.21 Score=60.38 Aligned_cols=98 Identities=20% Similarity=0.393 Sum_probs=72.4
Q ss_pred ccccEEEEecCCCCeEEEecCCce---eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCC
Q 002234 638 FEMVKVLSNGHDSSADFWNHRELV---HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 712 (949)
Q Consensus 638 ~~~~~l~s~s~dg~I~vWd~~~~~---~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 712 (949)
..+..++.|+..|.+-..|....+ ..-..-.++|++++|+.+ .++.|-.+|.|.+||+..+ +.++.+..|..+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAP 174 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCc
Confidence 345567888888888877776422 222334689999999987 8888999999999999998 788888777776
Q ss_pred EEEEEE---ecCCCEEEEEeCCCcEEEEEC
Q 002234 713 VTGLAI---LQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 713 V~~v~f---spdg~~L~Sgs~Dg~I~vWd~ 739 (949)
++.+-+ ..++..++++..-|. +|..
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 666544 345567888877776 5654
No 497
>PHA03098 kelch-like protein; Provisional
Probab=93.47 E-value=4.8 Score=48.01 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=55.6
Q ss_pred ccccccEEEEecCCC------CeEEEecCCceeeec----CCCCceEEEEEeCCEEEEEeCC-----CcEEEEecCCCce
Q 002234 636 LAFEMVKVLSNGHDS------SADFWNHRELVHVDS----SENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSIL 700 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg------~I~vWd~~~~~~~~~----~h~~~V~~l~~s~d~lasgs~D-----g~I~vWd~~t~~~ 700 (949)
...++..++.||.++ .+..||+.+...... ........+.+....++.||.+ .++..||..++.+
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 334556667777543 455667653221111 1122223333444466677765 3577899988866
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCC------CcEEEEECCCCee
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEI 744 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D------g~I~vWd~~~~~~ 744 (949)
.....+...... .+++ .-+++..+.||.+ ..+..||..+++.
T Consensus 371 ~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 REEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 554444321111 1122 2356777777742 3577888877653
No 498
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=93.45 E-value=0.089 Score=39.86 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=33.0
Q ss_pred cCcCccc--cccCceecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 002234 20 VCPITTH--IFDDPVTLETG-----QTYERRAIQEWIERG-NSSCPITR 60 (949)
Q Consensus 20 ~Cpic~~--~~~dPv~~~cg-----htfc~~ci~~~~~~~-~~~CP~c~ 60 (949)
.|-||++ --.+|.+.||. |-+=+.|+.+|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 55778888985 678899999999864 45799995
No 499
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.38 E-value=0.18 Score=37.73 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=27.9
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 919 SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
...|..++|+|...+||.|+.||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3479999999999999999999999998764
No 500
>PHA02790 Kelch-like protein; Provisional
Probab=93.31 E-value=5.3 Score=46.86 Aligned_cols=103 Identities=10% Similarity=-0.012 Sum_probs=53.6
Q ss_pred cccEEEEecCCC-----CeEEEecCCceeee----cCCCCceEEEEEeCCEEEEEeCC--CcEEEEecCCCceeeeEEec
Q 002234 639 EMVKVLSNGHDS-----SADFWNHRELVHVD----SSENGKVLSIACFRDKIFSGHSD--GTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 639 ~~~~l~s~s~dg-----~I~vWd~~~~~~~~----~~h~~~V~~l~~s~d~lasgs~D--g~I~vWd~~t~~~~~i~~l~ 707 (949)
++..++.||.++ ++..||+.+..... .........+...+...+.||.+ .++..||..++.+..+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345567777643 45567765322111 11111222333333466667654 46888998887665555543
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCe
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEE 743 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg---~I~vWd~~~~~ 743 (949)
........+ .-+|+..+.||.++ ++..||..+++
T Consensus 351 ~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 351 KPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 222221122 23677778887654 35667776654
Done!