Query 002234
Match_columns 949
No_of_seqs 1056 out of 4987
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 18:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.2E-37 4E-42 357.1 36.8 276 627-948 107-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 3.5E-37 1.2E-41 340.9 37.6 265 639-949 47-320 (321)
3 4gqb_B Methylosome protein 50; 100.0 1.2E-36 4.1E-41 339.8 34.5 276 631-949 33-330 (344)
4 1got_B GT-beta; complex (GTP-b 100.0 1.3E-35 4.6E-40 331.0 42.2 270 660-947 47-340 (340)
5 1nr0_A Actin interacting prote 100.0 4.7E-36 1.6E-40 362.2 39.2 306 627-949 146-610 (611)
6 1nr0_A Actin interacting prote 100.0 1E-35 3.6E-40 359.2 39.7 310 630-949 105-566 (611)
7 4g56_B MGC81050 protein; prote 100.0 3.3E-36 1.1E-40 338.3 32.3 281 627-949 41-342 (357)
8 3frx_A Guanine nucleotide-bind 100.0 3.6E-35 1.2E-39 324.5 39.8 272 661-948 10-315 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-35 8.8E-40 329.5 36.6 279 631-949 19-334 (345)
10 2pbi_B Guanine nucleotide-bind 100.0 9.4E-35 3.2E-39 326.1 39.5 271 660-947 56-354 (354)
11 4aow_A Guanine nucleotide-bind 100.0 1.8E-34 6.1E-39 320.3 41.3 275 660-949 30-336 (340)
12 2ynn_A Coatomer subunit beta'; 100.0 3.3E-35 1.1E-39 322.4 34.8 277 627-948 12-300 (304)
13 2ymu_A WD-40 repeat protein; u 100.0 1.6E-34 5.4E-39 346.0 43.7 293 632-947 266-577 (577)
14 2xzm_R RACK1; ribosome, transl 100.0 6.2E-35 2.1E-39 326.0 34.6 275 639-948 38-338 (343)
15 3iz6_a 40S ribosomal protein R 100.0 1.8E-35 6.1E-40 335.4 30.2 282 652-949 48-374 (380)
16 2hes_X YDR267CP; beta-propelle 100.0 2.5E-34 8.7E-39 319.3 37.1 278 660-949 6-327 (330)
17 1erj_A Transcriptional repress 100.0 8.1E-34 2.8E-38 323.3 38.7 278 629-948 65-387 (393)
18 2ynn_A Coatomer subunit beta'; 100.0 7.1E-34 2.4E-38 311.8 36.5 245 660-949 5-258 (304)
19 2ymu_A WD-40 repeat protein; u 100.0 1.9E-33 6.7E-38 336.5 43.6 295 632-949 225-538 (577)
20 4ery_A WD repeat-containing pr 100.0 1.4E-33 4.7E-38 310.2 38.7 277 628-949 23-311 (312)
21 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.2E-33 1.8E-37 322.0 44.4 292 635-949 124-441 (445)
22 1vyh_C Platelet-activating fac 100.0 1.2E-33 4.2E-38 323.7 35.2 249 655-949 94-368 (410)
23 1r5m_A SIR4-interacting protei 100.0 8E-33 2.7E-37 316.4 39.7 297 632-949 49-424 (425)
24 3ow8_A WD repeat-containing pr 100.0 4E-33 1.4E-37 308.3 35.7 244 662-949 26-278 (321)
25 3zwl_B Eukaryotic translation 100.0 2.4E-32 8.2E-37 306.1 40.2 270 661-949 25-345 (369)
26 3dm0_A Maltose-binding peripla 100.0 1.2E-32 4.1E-37 337.7 39.7 273 662-949 376-692 (694)
27 2pm9_A Protein WEB1, protein t 100.0 1.1E-33 3.6E-38 323.6 26.7 304 632-949 16-413 (416)
28 1gxr_A ESG1, transducin-like e 100.0 6.7E-32 2.3E-36 298.6 37.5 299 632-948 13-335 (337)
29 3v7d_B Cell division control p 100.0 1.2E-31 4E-36 312.1 39.3 288 635-949 127-420 (464)
30 2pm7_B Protein transport prote 100.0 8.8E-32 3E-36 294.0 33.6 247 662-948 3-283 (297)
31 3vl1_A 26S proteasome regulato 100.0 2E-31 6.8E-36 305.5 37.8 299 633-949 61-418 (420)
32 1sq9_A Antiviral protein SKI8; 100.0 1.9E-31 6.6E-36 303.0 35.3 275 661-949 9-394 (397)
33 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-31 4.6E-36 301.0 33.5 277 630-948 10-359 (372)
34 4e54_B DNA damage-binding prot 100.0 4.5E-32 1.5E-36 313.3 30.3 276 662-949 113-429 (435)
35 1pgu_A Actin interacting prote 100.0 1E-30 3.6E-35 314.7 41.0 306 631-949 119-613 (615)
36 1got_B GT-beta; complex (GTP-b 100.0 6.8E-31 2.3E-35 292.9 36.3 264 627-904 54-340 (340)
37 4gga_A P55CDC, cell division c 100.0 8.3E-31 2.8E-35 301.2 37.0 265 640-948 116-393 (420)
38 4h5i_A Guanine nucleotide-exch 100.0 8.3E-31 2.8E-35 295.2 36.0 276 632-949 18-342 (365)
39 4aez_A CDC20, WD repeat-contai 100.0 8.1E-31 2.8E-35 299.3 35.8 269 634-949 97-379 (401)
40 3odt_A Protein DOA1; ubiquitin 100.0 3.5E-30 1.2E-34 281.8 38.9 268 659-949 9-295 (313)
41 3ei3_B DNA damage-binding prot 100.0 4.9E-31 1.7E-35 298.7 32.8 273 631-949 76-381 (383)
42 2j04_B YDR362CP, TAU91; beta p 100.0 6E-32 2E-36 317.5 25.6 296 637-949 170-516 (524)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-30 4.6E-35 291.2 34.8 250 660-948 7-281 (345)
44 3sfz_A APAF-1, apoptotic pepti 100.0 1E-30 3.4E-35 342.0 38.7 301 631-949 618-1033(1249)
45 4gqb_B Methylosome protein 50; 100.0 7.4E-31 2.5E-35 292.9 31.1 230 636-909 90-333 (344)
46 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-30 4.6E-35 300.8 34.1 263 634-949 137-413 (435)
47 3frx_A Guanine nucleotide-bind 100.0 2.2E-30 7.4E-35 286.1 34.2 268 627-908 16-318 (319)
48 3bg1_A Protein SEC13 homolog; 100.0 1.8E-31 6E-36 294.4 25.4 247 662-948 7-291 (316)
49 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-30 5.6E-35 326.0 37.0 306 631-949 101-604 (902)
50 4ery_A WD repeat-containing pr 100.0 5.3E-30 1.8E-34 281.6 36.6 244 660-949 15-267 (312)
51 1r5m_A SIR4-interacting protei 100.0 2E-30 6.7E-35 296.5 34.3 282 650-948 25-359 (425)
52 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-30 3.7E-35 341.7 35.9 303 630-949 659-1115(1249)
53 4g56_B MGC81050 protein; prote 100.0 6.5E-31 2.2E-35 295.1 28.8 260 644-949 20-300 (357)
54 4ggc_A P55CDC, cell division c 100.0 7.8E-30 2.7E-34 279.9 36.8 268 636-948 33-313 (318)
55 3dwl_C Actin-related protein 2 100.0 1.5E-31 5E-36 302.0 22.8 280 631-948 14-377 (377)
56 2hes_X YDR267CP; beta-propelle 100.0 6.9E-30 2.4E-34 283.5 35.3 263 636-907 20-328 (330)
57 3k26_A Polycomb protein EED; W 100.0 4.9E-31 1.7E-35 295.3 26.1 269 640-949 34-365 (366)
58 3i2n_A WD repeat-containing pr 100.0 2.6E-30 9E-35 288.5 31.6 278 661-949 11-352 (357)
59 3mkq_A Coatomer beta'-subunit; 100.0 6.3E-30 2.1E-34 319.2 38.3 304 628-948 13-384 (814)
60 2pbi_B Guanine nucleotide-bind 100.0 9.2E-30 3.2E-34 285.4 34.5 266 626-904 62-354 (354)
61 3gre_A Serine/threonine-protei 100.0 8.3E-31 2.8E-35 302.4 26.4 278 627-947 62-437 (437)
62 1pgu_A Actin interacting prote 100.0 2.2E-29 7.6E-34 303.1 37.1 296 629-948 19-364 (615)
63 2xzm_R RACK1; ribosome, transl 100.0 6.1E-29 2.1E-33 277.4 37.5 244 660-948 13-283 (343)
64 4a11_B DNA excision repair pro 100.0 1.1E-29 3.7E-34 288.9 32.0 287 650-949 23-364 (408)
65 3iz6_a 40S ribosomal protein R 100.0 1.1E-30 3.9E-35 295.8 23.7 276 626-909 64-377 (380)
66 2oaj_A Protein SNI1; WD40 repe 100.0 6.4E-29 2.2E-33 311.5 39.6 308 630-948 19-517 (902)
67 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-28 7.4E-33 283.1 41.0 264 661-949 111-390 (445)
68 3jrp_A Fusion protein of prote 100.0 4.4E-29 1.5E-33 280.8 32.9 249 660-948 3-285 (379)
69 2pm9_A Protein WEB1, protein t 100.0 9.2E-30 3.1E-34 290.9 27.3 272 669-949 13-336 (416)
70 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-28 3.6E-33 273.2 34.9 252 661-949 4-336 (351)
71 3mmy_A MRNA export factor; mRN 100.0 8.5E-29 2.9E-33 277.0 34.4 274 659-947 30-343 (368)
72 1erj_A Transcriptional repress 100.0 1.9E-28 6.6E-33 278.8 36.9 237 665-949 61-340 (393)
73 1yfq_A Cell cycle arrest prote 100.0 1.4E-28 4.8E-33 273.1 34.9 263 662-942 5-315 (342)
74 3dw8_B Serine/threonine-protei 100.0 4E-29 1.4E-33 288.6 30.8 277 629-947 29-443 (447)
75 3gre_A Serine/threonine-protei 100.0 3.1E-29 1.1E-33 289.2 29.5 277 632-949 31-358 (437)
76 2pm7_B Protein transport prote 100.0 6.1E-29 2.1E-33 271.5 29.0 255 627-906 8-284 (297)
77 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-28 5.8E-33 275.6 32.8 246 663-948 3-272 (372)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 6.6E-29 2.2E-33 283.4 29.1 263 642-948 49-340 (402)
79 1gxr_A ESG1, transducin-like e 100.0 2E-28 6.9E-33 270.6 31.8 264 667-949 8-295 (337)
80 4aow_A Guanine nucleotide-bind 100.0 9.9E-28 3.4E-32 265.8 35.1 267 625-909 35-339 (340)
81 3mkq_A Coatomer beta'-subunit; 100.0 7.2E-28 2.5E-32 300.6 37.7 271 660-948 5-300 (814)
82 3dwl_C Actin-related protein 2 100.0 1.6E-29 5.4E-34 285.4 19.8 245 663-948 6-279 (377)
83 3bg1_A Protein SEC13 homolog; 100.0 1.1E-28 3.6E-33 272.1 25.0 264 621-906 6-292 (316)
84 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-27 5.9E-32 260.4 33.4 264 630-914 20-303 (313)
85 3vl1_A 26S proteasome regulato 100.0 6.3E-28 2.2E-32 276.3 31.2 264 669-949 57-364 (420)
86 3dm0_A Maltose-binding peripla 100.0 1.3E-27 4.5E-32 292.9 35.6 262 627-906 381-692 (694)
87 3k26_A Polycomb protein EED; W 100.0 4E-28 1.4E-32 271.5 26.9 246 661-949 11-317 (366)
88 3ei3_B DNA damage-binding prot 100.0 1.2E-27 4.1E-32 270.8 30.8 243 661-949 66-338 (383)
89 3zwl_B Eukaryotic translation 100.0 4.5E-27 1.5E-31 263.1 34.2 271 627-914 31-353 (369)
90 3v7d_B Cell division control p 100.0 6.3E-27 2.2E-31 272.1 35.9 263 634-946 168-459 (464)
91 1sq9_A Antiviral protein SKI8; 100.0 2.3E-27 7.7E-32 269.3 31.1 263 636-909 22-397 (397)
92 3i2n_A WD repeat-containing pr 100.0 7.9E-28 2.7E-32 268.4 26.4 276 629-910 19-356 (357)
93 3lrv_A PRE-mRNA-splicing facto 100.0 7.1E-28 2.4E-32 268.7 25.2 262 635-946 43-329 (343)
94 3jro_A Fusion protein of prote 100.0 1.1E-27 3.7E-32 295.9 28.2 248 661-949 2-284 (753)
95 3dw8_B Serine/threonine-protei 100.0 1.6E-27 5.5E-32 275.2 27.9 273 665-949 25-372 (447)
96 4e54_B DNA damage-binding prot 100.0 7.7E-28 2.6E-32 277.8 25.0 268 633-910 124-433 (435)
97 4gq1_A NUP37; propeller, trans 100.0 1.6E-27 5.6E-32 271.2 27.1 273 637-947 27-386 (393)
98 2j04_B YDR362CP, TAU91; beta p 100.0 9.2E-29 3.1E-33 290.4 16.8 235 680-948 175-426 (524)
99 2j04_A TAU60, YPL007P, hypothe 100.0 9.1E-28 3.1E-32 275.0 23.2 261 630-949 17-296 (588)
100 2xyi_A Probable histone-bindin 100.0 5.8E-27 2E-31 270.0 29.4 246 662-949 122-409 (430)
101 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-26 1.1E-30 264.2 35.5 235 663-948 128-363 (435)
102 4a11_B DNA excision repair pro 100.0 2.2E-26 7.7E-31 261.4 33.2 303 629-948 44-403 (408)
103 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-26 1.3E-30 256.0 33.6 272 659-948 10-334 (355)
104 3jrp_A Fusion protein of prote 100.0 1.9E-26 6.4E-31 259.3 29.1 257 626-907 9-287 (379)
105 3f3f_A Nucleoporin SEH1; struc 99.9 2.8E-26 9.7E-31 253.7 29.0 259 626-914 9-344 (351)
106 4aez_A CDC20, WD repeat-contai 99.9 1.1E-25 3.7E-30 256.7 32.1 252 631-926 137-399 (401)
107 1l0q_A Surface layer protein; 99.9 7.8E-25 2.7E-29 248.1 38.7 260 640-949 2-274 (391)
108 3bws_A Protein LP49; two-domai 99.9 3.5E-25 1.2E-29 254.7 35.9 274 635-949 129-431 (433)
109 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.9E-25 6.5E-30 258.9 32.8 237 666-948 100-389 (450)
110 2w18_A PALB2, fancn, partner a 99.9 6.4E-25 2.2E-29 236.8 33.9 247 680-949 56-356 (356)
111 4gga_A P55CDC, cell division c 99.9 2.3E-25 7.8E-30 255.8 31.3 244 630-914 149-402 (420)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 1.1E-25 3.7E-30 256.7 28.2 239 670-949 36-298 (402)
113 4h5i_A Guanine nucleotide-exch 99.9 1.1E-25 3.8E-30 253.3 25.8 223 644-908 98-344 (365)
114 3mmy_A MRNA export factor; mRN 99.9 2.8E-25 9.6E-30 248.4 26.8 264 627-905 38-344 (368)
115 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1E-24 3.6E-29 252.7 31.6 241 669-948 5-337 (450)
116 1yfq_A Cell cycle arrest prote 99.9 9.2E-25 3.1E-29 242.2 28.0 260 629-904 12-321 (342)
117 3jro_A Fusion protein of prote 99.9 2E-25 6.7E-30 275.7 24.2 262 623-909 4-287 (753)
118 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-25 1.1E-29 247.1 22.2 221 679-948 49-290 (343)
119 2j04_A TAU60, YPL007P, hypothe 99.9 4.7E-26 1.6E-30 260.9 15.6 266 626-939 50-350 (588)
120 4ggc_A P55CDC, cell division c 99.9 5.3E-24 1.8E-28 233.3 29.9 239 630-909 69-317 (318)
121 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-23 3.6E-28 236.2 27.8 232 692-949 3-270 (355)
122 4gq1_A NUP37; propeller, trans 99.9 4E-24 1.4E-28 243.1 23.6 254 634-905 95-387 (393)
123 2xyi_A Probable histone-bindin 99.9 1.1E-23 3.8E-28 242.6 27.4 234 634-908 134-411 (430)
124 3bws_A Protein LP49; two-domai 99.9 6.2E-23 2.1E-27 235.8 29.3 258 644-949 93-389 (433)
125 2w18_A PALB2, fancn, partner a 99.9 2.3E-22 7.7E-27 216.9 26.8 234 642-905 56-355 (356)
126 1l0q_A Surface layer protein; 99.9 1.4E-21 4.9E-26 221.2 34.0 267 633-948 36-340 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.8E-22 2E-26 226.9 29.6 260 641-949 76-386 (415)
128 1nir_A Nitrite reductase; hemo 99.9 7.5E-21 2.6E-25 224.8 37.8 300 636-949 145-513 (543)
129 3u4y_A Uncharacterized protein 99.9 6.4E-20 2.2E-24 202.5 32.2 269 640-949 10-303 (331)
130 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.6E-24 201.1 32.7 269 641-948 6-306 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-19 4.8E-24 207.1 31.8 243 640-932 143-410 (415)
132 1nir_A Nitrite reductase; hemo 99.9 1.1E-19 3.7E-24 214.8 30.6 255 676-949 145-457 (543)
133 2ojh_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 194.7 23.9 249 645-941 17-293 (297)
134 2ecf_A Dipeptidyl peptidase IV 99.8 4.6E-19 1.6E-23 218.7 28.2 307 632-948 40-457 (741)
135 1pby_B Quinohemoprotein amine 99.8 1E-18 3.5E-23 192.6 27.2 256 641-949 2-309 (337)
136 1wgm_A Ubiquitin conjugation f 99.8 1.8E-20 6.2E-25 164.9 9.9 81 8-90 12-93 (98)
137 3vgz_A Uncharacterized protein 99.8 7.7E-18 2.6E-22 187.1 33.6 262 634-940 46-334 (353)
138 3hfq_A Uncharacterized protein 99.8 6E-18 2E-22 188.2 32.2 262 648-948 14-315 (347)
139 1xfd_A DIP, dipeptidyl aminope 99.8 5.3E-19 1.8E-23 217.3 25.2 312 633-949 21-392 (723)
140 2kre_A Ubiquitin conjugation f 99.8 2.2E-20 7.4E-25 165.1 8.5 76 11-88 22-97 (100)
141 2z3z_A Dipeptidyl aminopeptida 99.8 2.9E-18 9.8E-23 210.3 28.7 297 640-949 35-434 (706)
142 2kr4_A Ubiquitin conjugation f 99.8 2.4E-20 8.3E-25 160.0 6.9 74 12-87 8-81 (85)
143 1k32_A Tricorn protease; prote 99.8 7.2E-18 2.5E-22 215.9 32.9 296 631-949 55-460 (1045)
144 1k32_A Tricorn protease; prote 99.8 5.3E-17 1.8E-21 207.8 32.9 278 650-948 183-500 (1045)
145 2ecf_A Dipeptidyl peptidase IV 99.8 1.4E-17 4.9E-22 205.3 25.2 261 668-948 36-411 (741)
146 2ojh_A Uncharacterized protein 99.8 3.1E-17 1.1E-21 176.5 24.7 218 683-949 17-257 (297)
147 3o4h_A Acylamino-acid-releasin 99.8 3.7E-17 1.3E-21 195.7 26.4 275 620-948 13-313 (582)
148 1t1h_A Gspef-atpub14, armadill 99.8 4.7E-19 1.6E-23 150.5 6.8 76 12-88 2-77 (78)
149 2f42_A STIP1 homology and U-bo 99.8 5.1E-19 1.7E-23 171.5 7.2 77 12-89 100-176 (179)
150 3vgz_A Uncharacterized protein 99.8 4.7E-16 1.6E-20 172.6 32.4 241 668-949 40-302 (353)
151 3scy_A Hypothetical bacterial 99.8 9.4E-16 3.2E-20 171.5 35.0 278 640-948 13-335 (361)
152 3u4y_A Uncharacterized protein 99.8 1.7E-16 5.7E-21 175.0 28.0 223 680-949 12-251 (331)
153 2oit_A Nucleoporin 214KDA; NH2 99.7 1.8E-16 6.3E-21 182.0 28.0 200 632-869 40-279 (434)
154 1ri6_A Putative isomerase YBHE 99.7 4.1E-16 1.4E-20 172.1 29.4 261 633-932 42-335 (343)
155 1jmx_B Amine dehydrogenase; ox 99.7 1.3E-16 4.3E-21 176.9 24.9 244 674-949 5-324 (349)
156 2z3z_A Dipeptidyl aminopeptida 99.7 4.2E-16 1.4E-20 191.0 28.4 259 632-909 85-437 (706)
157 1xfd_A DIP, dipeptidyl aminope 99.7 6.3E-17 2.2E-21 198.8 20.2 240 669-947 17-341 (723)
158 3o4h_A Acylamino-acid-releasin 99.7 1.4E-16 4.7E-21 190.7 22.0 229 668-948 21-274 (582)
159 2oit_A Nucleoporin 214KDA; NH2 99.7 2.7E-16 9.2E-21 180.6 20.7 210 650-908 23-279 (434)
160 1jmx_B Amine dehydrogenase; ox 99.7 1.1E-15 3.9E-20 169.1 24.9 261 635-915 6-333 (349)
161 2yu4_A E3 SUMO-protein ligase 99.7 9.8E-18 3.3E-22 147.0 6.4 74 15-89 4-86 (94)
162 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.4E-15 8.2E-20 168.7 27.4 268 642-948 4-339 (365)
163 1z68_A Fibroblast activation p 99.7 2.6E-16 9E-21 193.3 20.3 302 634-948 21-389 (719)
164 3hfq_A Uncharacterized protein 99.7 8.9E-15 3E-19 162.5 28.7 242 634-911 45-323 (347)
165 1pby_B Quinohemoprotein amine 99.7 8E-15 2.7E-19 161.3 26.4 248 633-916 38-319 (337)
166 3scy_A Hypothetical bacterial 99.7 3E-14 1E-18 159.2 31.3 260 633-928 54-360 (361)
167 2c2l_A CHIP, carboxy terminus 99.7 4E-17 1.4E-21 176.1 6.5 77 12-89 202-278 (281)
168 1z68_A Fibroblast activation p 99.6 1.4E-15 4.7E-20 186.9 18.0 236 673-948 20-344 (719)
169 3ztg_A E3 ubiquitin-protein li 99.6 4.4E-16 1.5E-20 136.7 8.3 78 11-89 6-86 (92)
170 3pe7_A Oligogalacturonate lyas 99.6 4.5E-14 1.5E-18 159.2 26.9 273 634-948 41-380 (388)
171 3fvz_A Peptidyl-glycine alpha- 99.6 4.6E-13 1.6E-17 147.7 32.8 228 688-948 69-320 (329)
172 2oiz_A Aromatic amine dehydrog 99.6 2.7E-13 9.2E-18 151.7 29.3 284 639-932 14-360 (361)
173 4a5s_A Dipeptidyl peptidase 4 99.6 2.4E-14 8.2E-19 176.3 22.4 238 669-948 17-351 (740)
174 4a5s_A Dipeptidyl peptidase 4 99.6 2.6E-13 8.9E-18 167.0 30.8 306 633-948 21-447 (740)
175 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.8E-13 1.3E-17 150.7 28.6 241 680-948 4-289 (365)
176 1q7f_A NHL, brain tumor CG1071 99.6 2.3E-12 8E-17 138.6 31.8 236 665-948 26-278 (286)
177 2dg1_A DRP35, lactonase; beta 99.6 2E-12 6.9E-17 142.4 30.6 260 634-941 11-301 (333)
178 2oiz_A Aromatic amine dehydrog 99.5 1.8E-12 6.1E-17 145.0 27.7 251 686-949 29-333 (361)
179 3fl2_A E3 ubiquitin-protein li 99.5 5.2E-15 1.8E-19 137.6 5.4 70 14-84 48-118 (124)
180 3azo_A Aminopeptidase; POP fam 99.5 4.6E-13 1.6E-17 162.6 22.4 251 661-947 16-320 (662)
181 3azo_A Aminopeptidase; POP fam 99.5 1.3E-12 4.4E-17 158.7 26.4 274 633-946 28-363 (662)
182 3c5m_A Oligogalacturonate lyas 99.5 4.6E-13 1.6E-17 151.0 20.9 272 633-948 40-380 (396)
183 2y43_A E3 ubiquitin-protein li 99.5 5.1E-15 1.7E-19 131.8 3.4 73 14-88 18-91 (99)
184 3ul1_B Importin subunit alpha- 99.5 5E-14 1.7E-18 165.2 12.8 320 124-464 59-387 (510)
185 3dsm_A Uncharacterized protein 99.5 1.2E-11 4.1E-16 136.2 31.0 257 648-949 15-301 (328)
186 1z6u_A NP95-like ring finger p 99.5 1.3E-14 4.4E-19 138.8 5.4 69 15-84 75-144 (150)
187 2gop_A Trilobed protease; beta 99.5 8E-12 2.7E-16 138.3 28.6 250 639-948 23-329 (347)
188 3no2_A Uncharacterized protein 99.5 4.9E-12 1.7E-16 135.6 25.7 219 677-938 3-231 (276)
189 3pe7_A Oligogalacturonate lyas 99.5 3.1E-12 1.1E-16 144.0 25.5 268 660-949 22-328 (388)
190 3e5z_A Putative gluconolactona 99.5 9.7E-12 3.3E-16 134.6 28.4 251 662-944 21-281 (296)
191 2xdw_A Prolyl endopeptidase; a 99.5 1.1E-11 3.9E-16 151.7 32.3 273 636-949 79-413 (710)
192 2bkl_A Prolyl endopeptidase; m 99.5 2.5E-12 8.4E-17 157.1 25.9 275 632-949 71-396 (695)
193 1xm9_A Plakophilin 1; armadill 99.5 1.3E-12 4.4E-17 150.8 20.9 316 125-464 5-449 (457)
194 3htk_C E3 SUMO-protein ligase 99.5 2.4E-14 8.1E-19 144.7 5.2 72 14-86 177-252 (267)
195 3l6x_A Catenin delta-1; cateni 99.5 1.2E-12 3.9E-17 152.3 19.9 323 123-463 49-431 (584)
196 3tpo_A Importin subunit alpha- 99.5 3.2E-13 1.1E-17 159.2 14.7 320 124-464 78-406 (529)
197 2ecw_A Tripartite motif-contai 99.4 1.9E-14 6.6E-19 124.3 2.9 70 9-79 10-84 (85)
198 3hct_A TNF receptor-associated 99.4 3.4E-14 1.2E-18 130.6 4.6 84 2-86 2-85 (118)
199 2yur_A Retinoblastoma-binding 99.4 9.2E-14 3.2E-18 116.1 6.7 64 9-72 6-71 (74)
200 3nmw_A APC variant protein; AR 99.4 9.7E-14 3.3E-18 153.2 8.9 261 184-464 47-334 (354)
201 1q7f_A NHL, brain tumor CG1071 99.4 5.1E-11 1.8E-15 128.0 30.1 231 635-909 36-282 (286)
202 3nmw_A APC variant protein; AR 99.4 1.6E-13 5.5E-18 151.5 10.3 238 164-421 69-334 (354)
203 2bay_A PRE-mRNA splicing facto 99.4 2.6E-14 8.9E-19 113.1 2.5 54 18-73 3-57 (61)
204 3lrq_A E3 ubiquitin-protein li 99.4 5E-14 1.7E-18 125.2 4.4 74 14-88 18-92 (100)
205 2ecy_A TNF receptor-associated 99.4 1.6E-13 5.6E-18 111.8 7.1 57 12-68 9-65 (66)
206 2ecv_A Tripartite motif-contai 99.4 2.7E-14 9.1E-19 123.4 2.5 69 9-78 10-83 (85)
207 2egp_A Tripartite motif-contai 99.4 5.1E-15 1.7E-19 125.9 -2.1 66 12-78 6-77 (79)
208 3nmz_A APC variant protein; pr 99.4 4.8E-13 1.6E-17 152.1 13.2 257 188-464 167-450 (458)
209 3now_A UNC-45 protein, SD10334 99.4 3.7E-13 1.3E-17 161.6 12.1 302 140-464 347-694 (810)
210 3l11_A E3 ubiquitin-protein li 99.4 4.2E-14 1.4E-18 129.6 2.8 69 14-83 11-86 (115)
211 2csy_A Zinc finger protein 183 99.4 1.2E-13 4.2E-18 117.7 5.2 64 13-79 10-73 (81)
212 1qks_A Cytochrome CD1 nitrite 99.4 4.7E-10 1.6E-14 132.2 37.0 297 639-948 166-536 (567)
213 2ckl_A Polycomb group ring fin 99.4 1.2E-13 4.1E-18 125.0 4.6 68 14-83 11-83 (108)
214 2djb_A Polycomb group ring fin 99.4 4.8E-13 1.6E-17 111.1 7.3 60 11-72 8-68 (72)
215 2z2n_A Virginiamycin B lyase; 99.4 1.4E-09 4.7E-14 117.0 37.0 262 636-948 22-293 (299)
216 3nmz_A APC variant protein; pr 99.4 5.2E-13 1.8E-17 151.9 9.4 249 158-427 179-455 (458)
217 1jm7_B BARD1, BRCA1-associated 99.4 8.6E-14 3E-18 127.7 2.2 70 14-87 18-88 (117)
218 3c5m_A Oligogalacturonate lyas 99.4 1.1E-11 3.7E-16 139.6 19.9 247 671-949 38-328 (396)
219 2ckl_B Ubiquitin ligase protei 99.4 1.9E-13 6.5E-18 133.9 4.3 72 14-85 50-122 (165)
220 3now_A UNC-45 protein, SD10334 99.4 4.1E-12 1.4E-16 152.6 16.4 303 137-464 393-737 (810)
221 2ysl_A Tripartite motif-contai 99.4 8.3E-13 2.8E-17 110.2 7.2 58 11-68 13-72 (73)
222 1rwi_B Serine/threonine-protei 99.3 1.2E-10 4.1E-15 123.7 25.0 233 670-949 25-263 (270)
223 3knv_A TNF receptor-associated 99.3 9.1E-14 3.1E-18 131.2 0.3 70 14-84 27-105 (141)
224 3fvz_A Peptidyl-glycine alpha- 99.3 2.9E-10 1E-14 125.1 28.2 241 634-907 29-322 (329)
225 3l6x_A Catenin delta-1; cateni 99.3 4.9E-12 1.7E-16 147.0 14.4 334 124-487 92-492 (584)
226 4ayc_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 127.0 4.3 64 16-83 51-114 (138)
227 2dg1_A DRP35, lactonase; beta 99.3 7.9E-11 2.7E-15 129.6 23.0 234 669-948 6-261 (333)
228 1xm9_A Plakophilin 1; armadill 99.3 7E-12 2.4E-16 144.6 15.1 271 171-463 5-405 (457)
229 1rmd_A RAG1; V(D)J recombinati 99.3 3.2E-13 1.1E-17 123.9 2.8 73 13-85 18-90 (116)
230 2ysj_A Tripartite motif-contai 99.3 1.7E-12 5.7E-17 104.8 6.8 49 11-59 13-63 (63)
231 1jm7_A BRCA1, breast cancer ty 99.3 4.9E-13 1.7E-17 122.0 3.4 69 15-84 18-88 (112)
232 3tpo_A Importin subunit alpha- 99.3 9.4E-12 3.2E-16 146.6 15.3 297 140-462 137-447 (529)
233 1yr2_A Prolyl oligopeptidase; 99.3 1.8E-10 6.1E-15 141.7 27.1 275 633-949 111-440 (741)
234 2mad_H Methylamine dehydrogena 99.3 4.1E-09 1.4E-13 117.9 35.5 265 638-949 30-349 (373)
235 3hcs_A TNF receptor-associated 99.3 7.5E-13 2.6E-17 130.4 4.4 82 1-83 1-82 (170)
236 2gop_A Trilobed protease; beta 99.3 1.7E-10 5.7E-15 127.6 24.0 223 687-948 42-289 (347)
237 1jdh_A Beta-catenin; beta-cate 99.3 1.8E-11 6.1E-16 144.2 16.0 310 127-465 22-340 (529)
238 3ul1_B Importin subunit alpha- 99.3 1.1E-11 3.7E-16 145.3 13.8 310 127-462 105-428 (510)
239 2d8t_A Dactylidin, ring finger 99.3 8.3E-13 2.8E-17 109.3 3.0 55 13-68 10-64 (71)
240 2z6h_A Catenin beta-1, beta-ca 99.3 2.3E-11 8E-16 146.9 16.8 303 134-465 25-337 (644)
241 1g25_A CDK-activating kinase a 99.3 2.3E-12 7.7E-17 104.7 4.7 55 17-72 2-61 (65)
242 2z2n_A Virginiamycin B lyase; 99.3 6.2E-09 2.1E-13 111.8 33.4 235 666-948 12-253 (299)
243 3sjl_D Methylamine dehydrogena 99.3 1.1E-09 3.8E-14 121.2 27.6 285 637-930 41-384 (386)
244 1qks_A Cytochrome CD1 nitrite 99.3 3.9E-09 1.3E-13 124.3 34.0 230 680-949 169-420 (567)
245 4b8j_A Importin subunit alpha- 99.3 1.8E-11 6.3E-16 144.2 14.2 318 121-464 73-400 (528)
246 2z6g_A B-catenin; FULL-length, 99.3 3.4E-11 1.2E-15 148.1 16.9 300 138-465 165-473 (780)
247 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.2E-09 7.6E-14 116.5 29.6 238 666-949 15-298 (314)
248 2ct2_A Tripartite motif protei 99.2 8E-12 2.7E-16 108.5 7.3 57 11-67 8-70 (88)
249 3ng2_A RNF4, snurf, ring finge 99.2 2.6E-12 8.7E-17 106.6 3.8 58 14-73 6-70 (71)
250 3dsm_A Uncharacterized protein 99.2 8.7E-10 3E-14 121.3 24.9 218 686-949 15-252 (328)
251 2ecj_A Tripartite motif-contai 99.2 7.2E-12 2.5E-16 99.2 5.8 48 12-59 9-58 (58)
252 2xdw_A Prolyl endopeptidase; a 99.2 8E-10 2.7E-14 135.2 26.9 239 633-909 129-416 (710)
253 3m62_A Ubiquitin conjugation f 99.2 3.7E-12 1.3E-16 151.2 5.8 75 13-89 886-961 (968)
254 2qc5_A Streptogramin B lactona 99.2 3.3E-08 1.1E-12 106.2 35.1 262 637-948 28-298 (300)
255 4hxt_A De novo protein OR329; 99.2 3.2E-11 1.1E-15 126.9 10.4 243 170-469 4-246 (252)
256 2ea6_A Ring finger protein 4; 99.2 1.2E-11 4.2E-16 101.8 5.5 53 12-65 9-68 (69)
257 3sjl_D Methylamine dehydrogena 99.2 5.6E-09 1.9E-13 115.6 28.6 252 687-949 58-362 (386)
258 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.9E-08 1E-12 111.1 34.7 287 639-947 52-375 (376)
259 3no2_A Uncharacterized protein 99.2 3.4E-09 1.2E-13 113.3 25.7 232 639-915 4-260 (276)
260 1e4u_A Transcriptional repress 99.2 2.2E-11 7.6E-16 101.7 6.2 56 14-69 7-66 (78)
261 2bkl_A Prolyl endopeptidase; m 99.2 4.4E-10 1.5E-14 137.1 20.5 235 632-910 124-400 (695)
262 2z6h_A Catenin beta-1, beta-ca 99.2 1.6E-10 5.6E-15 139.5 16.2 313 123-464 57-382 (644)
263 1rwi_B Serine/threonine-protei 99.2 3.4E-09 1.2E-13 112.4 23.7 228 636-909 31-266 (270)
264 3e5z_A Putative gluconolactona 99.2 4.5E-09 1.5E-13 113.4 24.9 203 702-948 19-244 (296)
265 1xip_A Nucleoporin NUP159; bet 99.2 5.6E-10 1.9E-14 124.1 17.8 184 712-938 39-232 (388)
266 2ect_A Ring finger protein 126 99.1 4.5E-11 1.6E-15 100.9 5.8 57 12-69 9-68 (78)
267 1wa5_B Importin alpha subunit; 99.1 3.6E-10 1.2E-14 133.2 15.7 316 123-464 88-412 (530)
268 2jdq_A Importin alpha-1 subuni 99.1 7.8E-10 2.7E-14 127.2 17.9 318 124-464 22-347 (450)
269 4b8j_A Importin subunit alpha- 99.1 3.5E-10 1.2E-14 133.2 15.3 298 140-463 135-442 (528)
270 2qc5_A Streptogramin B lactona 99.1 1E-07 3.5E-12 102.3 33.6 234 667-948 18-258 (300)
271 2xeu_A Ring finger protein 4; 99.1 1.4E-11 4.8E-16 99.8 2.2 54 17-72 2-62 (64)
272 1wa5_B Importin alpha subunit; 99.1 2.9E-10 1E-14 134.0 14.2 299 140-464 148-457 (530)
273 2jdq_A Importin alpha-1 subuni 99.1 3.7E-10 1.3E-14 129.9 14.6 311 128-464 70-390 (450)
274 4db8_A Armadillo-repeat protei 99.1 9.2E-11 3.1E-15 123.7 8.6 238 170-464 14-251 (252)
275 3tt9_A Plakophilin-2; cell adh 99.1 1.3E-10 4.3E-15 119.4 9.3 187 170-372 10-230 (233)
276 3g4e_A Regucalcin; six bladed 99.1 4.9E-08 1.7E-12 105.5 30.2 234 667-939 11-261 (297)
277 1jdh_A Beta-catenin; beta-cate 99.1 5.4E-10 1.8E-14 131.5 15.4 311 124-464 61-385 (529)
278 3c75_H MADH, methylamine dehyd 99.1 2.1E-08 7.2E-13 112.9 27.2 252 688-949 99-401 (426)
279 2z6g_A B-catenin; FULL-length, 99.1 6.5E-10 2.2E-14 136.6 15.7 276 164-464 230-518 (780)
280 3hrp_A Uncharacterized protein 99.1 8.8E-08 3E-12 108.5 31.3 235 669-949 131-409 (409)
281 2ghs_A AGR_C_1268P; regucalcin 99.1 1.4E-07 4.9E-12 103.3 31.8 223 671-939 51-291 (326)
282 4db8_A Armadillo-repeat protei 99.1 9.5E-10 3.2E-14 115.8 13.5 228 125-370 15-250 (252)
283 1bor_A Transcription factor PM 99.0 4E-11 1.4E-15 93.7 1.8 47 16-66 4-50 (56)
284 1xqr_A HSPBP1 protein; armadil 99.0 3.9E-10 1.3E-14 121.0 9.9 179 271-464 58-238 (296)
285 4hxt_A De novo protein OR329; 99.0 1.8E-09 6.3E-14 113.3 14.9 232 124-373 4-243 (252)
286 1kb0_A Quinohemoprotein alcoho 99.0 2.8E-08 9.7E-13 120.1 27.3 274 636-936 124-536 (677)
287 3iuj_A Prolyl endopeptidase; h 99.0 1.9E-08 6.5E-13 122.5 25.3 241 666-948 126-403 (693)
288 2ecn_A Ring finger protein 141 99.0 6.9E-11 2.4E-15 97.5 2.5 54 12-67 9-62 (70)
289 3c75_H MADH, methylamine dehyd 99.0 2.6E-08 8.9E-13 112.2 24.2 271 650-930 99-423 (426)
290 2ep4_A Ring finger protein 24; 99.0 3.6E-10 1.2E-14 94.2 6.7 55 12-67 9-66 (74)
291 1yr2_A Prolyl oligopeptidase; 99.0 1.1E-08 3.6E-13 125.8 22.4 237 632-909 166-443 (741)
292 1chc_A Equine herpes virus-1 r 99.0 1.8E-10 6.1E-15 94.4 4.2 49 16-65 3-52 (68)
293 1xip_A Nucleoporin NUP159; bet 99.0 6.6E-09 2.3E-13 115.5 18.1 175 633-856 42-233 (388)
294 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 5.8E-08 2E-12 105.3 25.3 229 636-907 25-299 (314)
295 2kiz_A E3 ubiquitin-protein li 99.0 4.8E-10 1.6E-14 92.1 6.5 52 14-66 10-64 (69)
296 2ecm_A Ring finger and CHY zin 99.0 2.3E-10 8E-15 89.3 4.3 47 17-64 4-54 (55)
297 3dr2_A Exported gluconolactona 99.0 5E-08 1.7E-12 105.8 24.4 249 664-944 40-301 (305)
298 1iym_A EL5; ring-H2 finger, ub 99.0 2.9E-10 9.9E-15 88.7 3.8 49 15-64 2-54 (55)
299 1yiq_A Quinohemoprotein alcoho 99.0 1E-07 3.4E-12 115.5 27.8 293 639-935 69-533 (689)
300 3opb_A SWI5-dependent HO expre 99.0 4.3E-09 1.5E-13 124.1 15.1 294 141-464 312-635 (778)
301 1mda_H Methylamine dehydrogena 98.9 6.6E-08 2.2E-12 107.1 22.9 245 689-949 47-345 (368)
302 2l0b_A E3 ubiquitin-protein li 98.9 6.5E-10 2.2E-14 96.6 5.2 51 14-65 36-89 (91)
303 3g4e_A Regucalcin; six bladed 98.9 2.4E-07 8.1E-12 100.0 26.6 218 639-895 24-260 (297)
304 1x4j_A Ring finger protein 38; 98.9 5.8E-10 2E-14 93.2 4.2 50 15-65 20-72 (75)
305 4ap4_A E3 ubiquitin ligase RNF 98.9 4.3E-10 1.5E-14 105.9 3.0 53 16-69 5-64 (133)
306 3tt9_A Plakophilin-2; cell adh 98.9 4.6E-10 1.6E-14 115.2 3.1 168 288-465 40-230 (233)
307 4db6_A Armadillo repeat protei 98.9 6.3E-09 2.1E-13 106.2 11.6 184 173-370 17-208 (210)
308 3opb_A SWI5-dependent HO expre 98.9 1.8E-08 6.2E-13 118.8 16.7 286 166-464 374-728 (778)
309 2hz6_A Endoplasmic reticulum t 98.9 8.9E-10 3E-14 123.3 5.0 204 676-932 7-216 (369)
310 2qe8_A Uncharacterized protein 98.9 1.2E-07 4.1E-12 104.8 22.0 237 669-942 17-313 (343)
311 1v87_A Deltex protein 2; ring- 98.9 1.6E-09 5.4E-14 98.8 5.6 52 15-66 22-95 (114)
312 4db6_A Armadillo repeat protei 98.9 3.6E-09 1.2E-13 107.9 8.9 195 249-464 15-209 (210)
313 3q7m_A Lipoprotein YFGL, BAMB; 98.9 4.2E-06 1.4E-10 93.3 34.5 250 676-948 51-335 (376)
314 4ic3_A E3 ubiquitin-protein li 98.8 5.3E-10 1.8E-14 92.9 1.6 46 15-65 21-67 (74)
315 1kb0_A Quinohemoprotein alcoho 98.8 5.2E-07 1.8E-11 109.0 27.9 294 640-949 77-506 (677)
316 2ghs_A AGR_C_1268P; regucalcin 98.8 9.5E-07 3.3E-11 96.7 27.4 213 640-896 61-291 (326)
317 1mda_H Methylamine dehydrogena 98.8 1.8E-07 6E-12 103.7 21.0 274 641-929 33-366 (368)
318 1xqr_A HSPBP1 protein; armadil 98.8 5E-08 1.7E-12 104.6 15.7 201 121-372 27-239 (296)
319 2mad_H Methylamine dehydrogena 98.8 3.4E-06 1.2E-10 94.1 31.4 240 633-914 70-357 (373)
320 2y1n_A E3 ubiquitin-protein li 98.8 2.9E-09 9.8E-14 115.4 5.1 51 18-68 332-382 (389)
321 1npe_A Nidogen, entactin; glyc 98.8 9.5E-06 3.2E-10 85.8 32.5 246 642-932 3-263 (267)
322 3hrp_A Uncharacterized protein 98.8 1E-06 3.6E-11 99.7 26.3 234 636-905 138-408 (409)
323 2ecg_A Baculoviral IAP repeat- 98.7 3.3E-09 1.1E-13 88.4 2.6 47 15-66 22-69 (75)
324 3iuj_A Prolyl endopeptidase; h 98.7 5E-07 1.7E-11 109.9 22.4 234 634-910 134-408 (693)
325 1wim_A KIAA0161 protein; ring 98.7 2.2E-09 7.5E-14 94.0 0.9 68 16-85 3-84 (94)
326 3dr2_A Exported gluconolactona 98.7 1.1E-06 3.6E-11 95.3 22.2 223 636-898 52-298 (305)
327 3hxj_A Pyrrolo-quinoline quino 98.7 1.8E-06 6.1E-11 94.1 23.4 250 640-948 70-322 (330)
328 2ecl_A Ring-box protein 2; RNF 98.7 2E-08 6.7E-13 85.0 5.8 48 17-65 14-76 (81)
329 1yiq_A Quinohemoprotein alcoho 98.7 7.3E-06 2.5E-10 99.2 30.3 265 677-949 69-504 (689)
330 3hxj_A Pyrrolo-quinoline quino 98.6 4.5E-07 1.5E-11 98.9 17.6 254 634-948 24-282 (330)
331 4ap4_A E3 ubiquitin ligase RNF 98.6 4.7E-09 1.6E-13 98.7 1.2 56 15-72 69-131 (133)
332 2vje_A E3 ubiquitin-protein li 98.6 1.8E-08 6.2E-13 80.7 3.5 48 16-64 6-56 (64)
333 2vje_B MDM4 protein; proto-onc 98.6 2.5E-08 8.5E-13 79.7 3.3 48 17-65 6-56 (63)
334 2ea5_A Cell growth regulator w 98.6 5.4E-08 1.8E-12 78.9 5.3 50 12-66 9-59 (68)
335 2qe8_A Uncharacterized protein 98.6 2.7E-06 9.2E-11 93.8 20.9 210 701-948 10-276 (343)
336 3dpl_R Ring-box protein 1; ubi 98.5 8.4E-08 2.9E-12 85.0 4.8 47 17-64 36-100 (106)
337 2yho_A E3 ubiquitin-protein li 98.5 2.3E-08 7.9E-13 83.8 1.0 47 15-66 15-62 (79)
338 1kv9_A Type II quinohemoprotei 98.5 2.2E-05 7.4E-10 94.7 27.2 274 637-938 114-520 (668)
339 4a2l_A BT_4663, two-component 98.5 0.00099 3.4E-08 82.1 42.9 292 642-947 185-523 (795)
340 2hz6_A Endoplasmic reticulum t 98.5 1.4E-07 4.6E-12 105.5 7.1 178 721-948 8-190 (369)
341 1fwx_A Nitrous oxide reductase 98.4 1.4E-06 4.9E-11 100.3 15.0 237 680-939 104-407 (595)
342 2ad6_A Methanol dehydrogenase 98.4 4.6E-05 1.6E-09 89.9 28.0 78 859-936 444-523 (571)
343 2iwa_A Glutamine cyclotransfer 98.4 3.8E-05 1.3E-09 80.3 23.9 201 701-948 10-235 (266)
344 4a2l_A BT_4663, two-component 98.4 0.00074 2.5E-08 83.2 39.3 287 642-948 227-569 (795)
345 1kv9_A Type II quinohemoprotei 98.4 5.9E-05 2E-09 90.9 28.0 289 640-948 66-486 (668)
346 2ece_A 462AA long hypothetical 98.4 3.8E-05 1.3E-09 85.5 23.5 240 680-938 98-399 (462)
347 3t6p_A Baculoviral IAP repeat- 98.4 6.2E-08 2.1E-12 104.9 1.0 46 15-65 292-338 (345)
348 3nol_A Glutamine cyclotransfer 98.4 7E-05 2.4E-09 77.4 23.4 190 701-939 32-244 (262)
349 2fp8_A Strictosidine synthase; 98.3 0.00019 6.3E-09 78.0 27.5 254 670-949 20-312 (322)
350 2ad6_A Methanol dehydrogenase 98.3 0.00016 5.4E-09 85.3 28.3 135 810-948 272-492 (571)
351 1flg_A Protein (quinoprotein e 98.3 0.00021 7.2E-09 84.3 29.0 77 859-935 466-544 (582)
352 1w6s_A Methanol dehydrogenase 98.3 0.00019 6.5E-09 84.7 28.4 78 859-936 453-533 (599)
353 2iwa_A Glutamine cyclotransfer 98.3 0.00033 1.1E-08 73.2 26.7 194 670-908 22-238 (266)
354 2ece_A 462AA long hypothetical 98.3 0.00018 6.3E-09 80.0 25.6 202 720-949 93-351 (462)
355 3mbr_X Glutamine cyclotransfer 98.2 0.00033 1.1E-08 71.8 25.3 190 701-939 10-223 (243)
356 2d8s_A Cellular modulator of i 98.2 1.1E-06 3.8E-11 73.4 5.6 54 15-68 12-73 (80)
357 3v9f_A Two-component system se 98.2 0.0025 8.4E-08 78.4 36.3 287 643-948 224-566 (781)
358 4a0k_B E3 ubiquitin-protein li 98.2 2.5E-07 8.6E-12 83.0 0.3 46 18-64 48-111 (117)
359 1flg_A Protein (quinoprotein e 98.2 0.00055 1.9E-08 80.8 28.7 256 674-948 113-514 (582)
360 3nok_A Glutaminyl cyclase; bet 98.2 0.00017 5.7E-09 74.6 21.0 188 701-938 44-253 (268)
361 2p4o_A Hypothetical protein; p 98.1 0.0013 4.5E-08 70.7 28.9 228 669-940 32-278 (306)
362 3v9f_A Two-component system se 98.1 0.0048 1.7E-07 75.7 37.6 291 641-948 174-522 (781)
363 1fwx_A Nitrous oxide reductase 98.1 8.9E-05 3.1E-09 85.5 19.0 201 721-948 100-359 (595)
364 3nok_A Glutaminyl cyclase; bet 98.1 0.00052 1.8E-08 70.9 22.8 175 669-889 55-245 (268)
365 3grl_A General vesicular trans 98.1 5.2E-05 1.8E-09 87.3 16.5 296 121-462 20-340 (651)
366 3nol_A Glutamine cyclotransfer 98.0 0.001 3.5E-08 68.7 24.1 181 670-896 44-244 (262)
367 1w6s_A Methanol dehydrogenase 98.0 0.0012 4.2E-08 77.7 27.8 135 810-948 278-501 (599)
368 1npe_A Nidogen, entactin; glyc 98.0 0.0054 1.8E-07 64.2 29.9 214 688-948 10-236 (267)
369 3v65_B Low-density lipoprotein 98.0 0.0057 2E-07 68.1 31.0 225 648-915 94-326 (386)
370 3v64_C Agrin; beta propeller, 98.0 0.012 4.2E-07 64.4 33.2 223 649-914 52-282 (349)
371 1k3i_A Galactose oxidase precu 97.9 0.0006 2E-08 82.0 22.8 259 673-939 190-530 (656)
372 2fp8_A Strictosidine synthase; 97.8 0.0029 9.8E-08 68.5 24.7 226 637-907 27-313 (322)
373 1ijq_A LDL receptor, low-densi 97.8 0.045 1.5E-06 58.9 33.4 223 649-914 9-245 (316)
374 2xe4_A Oligopeptidase B; hydro 97.7 0.0032 1.1E-07 76.8 26.0 195 670-905 175-398 (751)
375 3mbr_X Glutamine cyclotransfer 97.7 0.0023 7.9E-08 65.5 20.5 153 788-948 18-177 (243)
376 3p5b_L Low density lipoprotein 97.7 0.053 1.8E-06 60.5 33.7 225 649-915 91-328 (400)
377 2p4o_A Hypothetical protein; p 97.7 0.0089 3E-07 64.1 26.4 225 636-898 39-279 (306)
378 3v64_C Agrin; beta propeller, 97.7 0.035 1.2E-06 60.7 31.2 229 671-947 36-272 (349)
379 3v65_B Low-density lipoprotein 97.7 0.024 8.2E-07 63.0 29.8 228 673-947 81-315 (386)
380 2xbg_A YCF48-like protein; pho 97.7 0.051 1.7E-06 58.8 31.3 231 668-947 79-319 (327)
381 3vk6_A E3 ubiquitin-protein li 97.6 4E-05 1.4E-09 64.6 4.2 45 20-64 3-48 (101)
382 3tc9_A Hypothetical hydrolase; 97.6 0.016 5.4E-07 65.5 27.2 235 669-948 137-428 (430)
383 4hw6_A Hypothetical protein, I 97.5 0.035 1.2E-06 62.7 28.2 237 669-949 139-432 (433)
384 3sov_A LRP-6, low-density lipo 97.5 0.074 2.5E-06 57.2 29.5 223 649-914 12-245 (318)
385 1ijq_A LDL receptor, low-densi 97.5 0.15 5.1E-06 54.7 31.4 212 688-947 10-235 (316)
386 3qqz_A Putative uncharacterize 97.4 0.13 4.5E-06 53.1 27.9 206 704-947 20-250 (255)
387 3qqz_A Putative uncharacterize 97.3 0.2 6.9E-06 51.7 28.9 213 663-907 21-253 (255)
388 3m0c_C LDL receptor, low-densi 97.3 0.25 8.4E-06 60.0 33.5 227 648-914 402-639 (791)
389 3amr_A 3-phytase; beta-propell 97.3 0.054 1.9E-06 58.3 24.5 194 721-948 39-261 (355)
390 2xe4_A Oligopeptidase B; hydro 97.3 0.0076 2.6E-07 73.5 20.3 195 712-946 175-394 (751)
391 2xbg_A YCF48-like protein; pho 97.3 0.24 8.3E-06 53.3 30.3 229 667-944 34-273 (327)
392 3ltm_A Alpha-REP4; protein eng 97.2 0.0042 1.4E-07 62.5 14.8 187 210-468 17-207 (211)
393 3ei3_A DNA damage-binding prot 97.2 0.29 9.8E-06 62.1 34.6 299 640-949 523-912 (1158)
394 3ltj_A Alpharep-4; protein eng 97.2 0.013 4.3E-07 58.4 17.6 125 300-466 76-200 (201)
395 3sov_A LRP-6, low-density lipo 97.2 0.19 6.5E-06 54.0 27.8 217 687-948 12-236 (318)
396 1oyz_A Hypothetical protein YI 97.1 0.0098 3.4E-07 62.7 16.8 220 168-464 23-250 (280)
397 1k3i_A Galactose oxidase precu 97.1 0.018 6.2E-07 69.0 20.6 108 639-747 197-329 (656)
398 3p5b_L Low density lipoprotein 97.1 0.38 1.3E-05 53.5 30.1 219 680-947 85-317 (400)
399 2ct0_A Non-SMC element 1 homol 97.1 0.00056 1.9E-08 55.6 4.8 48 18-65 15-64 (74)
400 3kya_A Putative phosphatase; s 97.0 0.23 7.8E-06 56.4 27.4 245 670-948 140-473 (496)
401 3grl_A General vesicular trans 96.9 0.0027 9.3E-08 73.2 10.7 207 225-447 39-267 (651)
402 4a0p_A LRP6, LRP-6, low-densit 96.9 0.86 2.9E-05 53.8 32.7 221 648-914 13-244 (628)
403 2ism_A Putative oxidoreductase 96.9 0.33 1.1E-05 52.9 27.0 73 668-742 30-115 (352)
404 1vyx_A ORF K3, K3RING; zinc-bi 96.8 0.0012 4.1E-08 51.4 4.7 49 17-65 5-59 (60)
405 3a9g_A Putative uncharacterize 96.7 0.73 2.5E-05 50.2 28.2 73 668-742 28-115 (354)
406 4hw6_A Hypothetical protein, I 96.7 0.32 1.1E-05 54.7 25.9 102 641-744 153-262 (433)
407 1n7d_A LDL receptor, low-densi 96.7 0.0074 2.5E-07 72.7 12.7 227 649-915 385-622 (699)
408 3ei3_A DNA damage-binding prot 96.7 1.6 5.6E-05 55.2 34.2 228 668-939 513-756 (1158)
409 3m0c_C LDL receptor, low-densi 96.7 0.93 3.2E-05 54.9 30.8 215 687-947 403-629 (791)
410 3amr_A 3-phytase; beta-propell 96.6 0.52 1.8E-05 50.7 25.0 194 637-876 37-272 (355)
411 1bpo_A Protein (clathrin); cla 96.6 1.2 3.9E-05 49.1 29.7 222 687-945 85-326 (494)
412 2vpj_A Kelch-like protein 12; 96.6 0.3 1E-05 51.6 23.8 228 638-909 13-280 (301)
413 2xn4_A Kelch-like protein 2; s 96.6 0.38 1.3E-05 50.9 24.5 228 638-909 14-278 (302)
414 3tc9_A Hypothetical hydrolase; 96.6 0.04 1.4E-06 62.1 17.3 149 792-948 138-299 (430)
415 2xn4_A Kelch-like protein 2; s 96.6 0.46 1.6E-05 50.2 24.9 225 680-948 18-274 (302)
416 3ltm_A Alpha-REP4; protein eng 96.6 0.046 1.6E-06 54.7 15.8 150 166-369 17-170 (211)
417 3ii7_A Kelch-like protein 7; p 96.5 0.72 2.5E-05 48.7 26.1 227 640-909 12-274 (306)
418 2p9w_A MAL S 1 allergenic prot 96.5 0.26 9E-06 52.5 21.8 156 790-949 12-214 (334)
419 2vpj_A Kelch-like protein 12; 96.5 0.31 1.1E-05 51.5 22.9 216 688-948 31-276 (301)
420 2xzh_A Clathrin heavy chain 1; 96.5 1.1 3.8E-05 47.3 29.9 258 649-945 48-327 (365)
421 3ii7_A Kelch-like protein 7; p 96.5 0.51 1.7E-05 50.0 24.5 222 680-948 14-270 (306)
422 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.00052 1.8E-08 71.8 -0.4 48 17-64 307-372 (381)
423 3s94_A LRP-6, low-density lipo 96.3 1 3.4E-05 53.1 27.6 226 648-914 16-250 (619)
424 2p9w_A MAL S 1 allergenic prot 96.2 0.5 1.7E-05 50.3 21.6 136 809-946 99-261 (334)
425 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0018 6.3E-08 56.8 2.2 32 17-48 2-36 (101)
426 4asc_A Kelch repeat and BTB do 96.1 0.97 3.3E-05 48.0 24.3 215 680-940 7-253 (315)
427 2g8s_A Glucose/sorbosone dehyd 96.0 2.2 7.5E-05 46.3 26.6 67 877-943 269-347 (353)
428 1zgk_A Kelch-like ECH-associat 95.8 0.88 3E-05 48.2 22.2 232 633-909 18-289 (308)
429 1oyz_A Hypothetical protein YI 95.8 0.4 1.4E-05 50.1 19.2 217 166-459 52-277 (280)
430 3sre_A PON1, serum paraoxonase 95.8 0.84 2.9E-05 49.5 21.9 126 809-940 138-287 (355)
431 4gmo_A Putative uncharacterize 95.8 0.015 5E-07 70.0 8.5 221 173-435 39-272 (684)
432 2woz_A Kelch repeat and BTB do 95.8 1.6 5.4E-05 46.4 24.1 124 811-940 128-263 (318)
433 1zgk_A Kelch-like ECH-associat 95.7 0.57 2E-05 49.7 20.2 132 810-948 137-285 (308)
434 3s94_A LRP-6, low-density lipo 95.7 4.7 0.00016 47.3 38.3 294 642-948 54-421 (619)
435 3sre_A PON1, serum paraoxonase 95.4 2.3 7.9E-05 46.0 23.5 79 837-915 221-308 (355)
436 4a0p_A LRP6, LRP-6, low-densit 95.3 6.4 0.00022 46.3 43.6 170 640-820 49-238 (628)
437 1n7d_A LDL receptor, low-densi 95.3 0.064 2.2E-06 64.5 11.7 219 687-947 385-611 (699)
438 4asc_A Kelch repeat and BTB do 95.3 2.5 8.6E-05 44.7 23.3 100 642-745 7-130 (315)
439 3ott_A Two-component system se 95.2 7.6 0.00026 46.8 35.7 261 670-948 192-500 (758)
440 2woz_A Kelch repeat and BTB do 95.2 3.2 0.00011 43.9 23.8 227 640-911 16-291 (318)
441 3ltj_A Alpharep-4; protein eng 95.0 0.088 3E-06 52.1 9.8 127 296-464 10-136 (201)
442 1bpo_A Protein (clathrin); cla 94.9 5.6 0.00019 43.8 28.3 234 640-908 77-332 (494)
443 2ism_A Putative oxidoreductase 94.3 5.5 0.00019 43.0 23.2 92 636-729 38-153 (352)
444 3i2d_A E3 SUMO-protein ligase 94.2 0.032 1.1E-06 59.6 4.5 65 16-81 247-315 (371)
445 3kya_A Putative phosphatase; s 94.0 0.96 3.3E-05 51.3 16.5 153 792-947 140-338 (496)
446 1b3u_A Protein (protein phosph 93.9 0.6 2E-05 54.4 15.5 298 121-467 9-313 (588)
447 4gmo_A Putative uncharacterize 93.9 0.2 6.8E-06 60.0 11.3 209 122-370 34-257 (684)
448 3ott_A Two-component system se 93.7 15 0.00053 44.0 38.1 284 642-947 114-445 (758)
449 2zwa_A Leucine carboxyl methyl 93.7 3.6 0.00012 49.1 21.8 196 679-911 399-639 (695)
450 1xi4_A Clathrin heavy chain; a 93.5 3.4 0.00012 52.3 20.9 257 649-943 47-324 (1630)
451 2uvk_A YJHT; unknown function, 93.5 8.8 0.0003 41.2 22.9 91 639-731 19-128 (357)
452 2be1_A Serine/threonine-protei 93.2 1 3.6E-05 48.3 14.4 123 679-827 11-138 (339)
453 2xzh_A Clathrin heavy chain 1; 93.1 10 0.00036 40.1 28.1 236 638-908 76-333 (365)
454 4fo9_A E3 SUMO-protein ligase 93.0 0.07 2.4E-06 56.9 4.5 65 16-81 213-281 (360)
455 4fdd_A Transportin-1; heat rep 92.7 1.9 6.5E-05 53.0 17.9 310 138-476 143-483 (852)
456 2uvk_A YJHT; unknown function, 92.4 3.7 0.00013 44.2 17.9 64 680-745 22-99 (357)
457 1b3u_A Protein (protein phosph 91.1 2.2 7.6E-05 49.5 15.2 89 169-258 282-375 (588)
458 3pbp_A Nucleoporin NUP82; beta 91.1 6.5 0.00022 43.2 17.3 133 808-945 39-207 (452)
459 2be1_A Serine/threonine-protei 91.0 0.33 1.1E-05 52.3 7.0 111 801-917 11-140 (339)
460 1weo_A Cellulose synthase, cat 90.9 0.3 1E-05 39.9 4.9 48 17-64 15-69 (93)
461 1te4_A Conserved protein MTH18 90.8 0.078 2.7E-06 48.6 1.7 28 433-461 103-130 (131)
462 3das_A Putative oxidoreductase 90.3 22 0.00074 38.2 29.5 77 665-741 28-116 (347)
463 2vgl_B AP-2 complex subunit be 90.3 12 0.00039 43.7 20.3 293 122-462 120-417 (591)
464 3nw0_A Non-structural maintena 89.7 0.29 9.8E-06 49.8 4.9 49 18-66 180-230 (238)
465 4fdd_A Transportin-1; heat rep 89.7 25 0.00085 42.9 23.6 268 167-466 127-431 (852)
466 3qhy_B Beta-lactamase inhibito 89.4 22 0.00075 36.8 22.8 218 669-947 24-243 (282)
467 1xi4_A Clathrin heavy chain; a 89.4 14 0.00047 47.0 20.0 234 640-909 77-333 (1630)
468 1tl2_A L10, protein (tachylect 88.7 15 0.00051 36.6 16.1 99 839-943 90-203 (236)
469 1w63_A Adapter-related protein 88.4 28 0.00097 40.6 21.7 67 300-371 313-379 (618)
470 3pbp_A Nucleoporin NUP82; beta 88.2 5.8 0.0002 43.6 14.1 91 858-949 40-157 (452)
471 1ibr_B P95, importin beta-1 su 87.9 16 0.00054 40.4 18.6 277 167-466 127-439 (462)
472 1w63_A Adapter-related protein 85.9 43 0.0015 39.0 21.4 289 141-469 103-419 (618)
473 3a9g_A Putative uncharacterize 85.6 42 0.0014 35.9 24.4 92 636-729 36-153 (354)
474 2vgl_B AP-2 complex subunit be 85.2 8.5 0.00029 44.9 14.7 72 299-370 159-230 (591)
475 2g8s_A Glucose/sorbosone dehyd 83.5 17 0.00057 39.1 15.2 132 803-936 32-214 (353)
476 1tl2_A L10, protein (tachylect 83.3 1.3 4.5E-05 44.1 5.4 102 837-944 41-157 (236)
477 1cru_A Protein (soluble quinop 83.1 63 0.0021 36.0 27.3 61 668-728 26-97 (454)
478 1u6g_C TIP120 protein, CAND1; 82.6 18 0.00061 46.3 17.5 262 180-466 17-286 (1230)
479 2bpt_A Importin beta-1 subunit 82.5 39 0.0013 40.9 19.9 284 170-477 413-724 (861)
480 2qk2_A LP04448P; mini spindles 82.4 24 0.00083 35.3 15.2 180 133-373 25-207 (242)
481 2zwa_A Leucine carboxyl methyl 80.6 37 0.0012 40.3 18.0 133 810-948 468-633 (695)
482 2bpt_A Importin beta-1 subunit 80.2 23 0.00078 43.0 16.6 157 300-466 369-531 (861)
483 2qk1_A Protein STU2; STU2P, XM 79.6 34 0.0012 34.6 15.0 181 173-372 21-221 (249)
484 3das_A Putative oxidoreductase 79.4 21 0.00071 38.3 13.8 102 837-939 32-159 (347)
485 3b2a_A TON_1937, putative unch 79.3 12 0.0004 37.3 10.5 146 298-465 31-180 (265)
486 3b2a_A TON_1937, putative unch 79.2 23 0.00077 35.4 12.4 177 170-373 35-220 (265)
487 1te4_A Conserved protein MTH18 78.7 5.7 0.0002 35.7 7.9 58 301-369 43-100 (131)
488 4ady_A RPN2, 26S proteasome re 77.0 32 0.0011 41.8 15.6 77 301-384 612-692 (963)
489 2of3_A ZYG-9; multifunctional 76.5 64 0.0022 32.9 15.7 68 301-373 168-238 (266)
490 3mjh_B Early endosome antigen 76.3 0.63 2.2E-05 31.1 0.4 16 18-33 5-20 (34)
491 2cs3_A Protein C14ORF4, MY039 75.8 4 0.00014 32.5 4.8 37 15-51 12-52 (93)
492 2ko5_A Ring finger protein Z; 74.7 4.2 0.00014 33.7 4.9 52 16-69 26-77 (99)
493 3kci_A Probable E3 ubiquitin-p 74.2 1E+02 0.0035 33.3 32.7 248 670-948 54-343 (389)
494 2jne_A Hypothetical protein YF 72.9 0.15 5.1E-06 42.5 -4.0 42 17-64 31-72 (101)
495 1qgr_A Protein (importin beta 72.7 38 0.0013 41.1 15.6 153 300-466 321-481 (876)
496 2qk2_A LP04448P; mini spindles 72.5 13 0.00043 37.4 9.4 148 300-466 56-207 (242)
497 1qgr_A Protein (importin beta 70.1 57 0.002 39.4 16.4 114 248-372 323-438 (876)
498 4ffb_C Protein STU2; tubulin f 65.6 19 0.00063 37.2 9.1 67 300-372 102-169 (278)
499 2iw3_A Elongation factor 3A; a 63.6 1.1E+02 0.0039 37.4 16.5 290 120-462 12-322 (986)
500 1cru_A Protein (soluble quinop 62.4 1.9E+02 0.0065 31.9 21.5 36 710-745 26-61 (454)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-37 Score=357.13 Aligned_cols=276 Identities=19% Similarity=0.281 Sum_probs=244.9
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
|...+....+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ ++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--EC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ce
Confidence 44445566677889999999999999999987 467788999999999999996 9999999999999999998 78
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
+.++.+|...|++++|+|++++|++|+.|++|++||+.++.. ......|...|.++. |+|+|..
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~-------~~~~g~~-------- 248 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVR-------PNQDGTL-------- 248 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEE-------ECTTSSE--------
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEE-------ECCCCCE--------
Confidence 999999999999999999999999999999999999999852 222335566677666 6777664
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC---------------
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--------------- 847 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--------------- 847 (949)
+++|+.||+|++||+.++... ..+.+|...|.+++|+|+
T Consensus 249 --------------------l~s~s~D~~v~vwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 249 --------------------IASCSNDQTVRVWVVATKECK------AELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp --------------------EEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred --------------------EEEEcCCCeEEEEECCCCcee------eEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 889999999999999999877 456778999999999986
Q ss_pred -----ceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccc
Q 002234 848 -----LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS 919 (949)
Q Consensus 848 -----~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~ 919 (949)
+.++++++.|+ +|++||++++.++..+. |...|.+++|+|+ ++++|+.||+|++||+.+++++.++ .+|.
T Consensus 303 ~~~~~g~~l~sgs~D~-~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h~ 380 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHE 380 (410)
T ss_dssp -----CCEEEEEETTS-EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCS
T ss_pred ccCCCCCEEEEEeCCC-eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCC
Confidence 66899999997 99999999999998887 7788999999998 8999999999999999999999999 4899
Q ss_pred cceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 920 GKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 920 ~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.|++++|+|++++|++|+.||+|++|++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999996
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=340.92 Aligned_cols=265 Identities=20% Similarity=0.292 Sum_probs=237.4
Q ss_pred cccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCC
Q 002234 639 EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 712 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 712 (949)
++.+|++|+.|++|++|+... ....+.+|...|.+++|+++ ++++++.||+|++||+.++ +++..+..|...
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~~~~~~~~~~~~ 124 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSIDAGPVD 124 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTC
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--CEEEEEeCCCcc
Confidence 467899999999999999863 24467899999999999996 9999999999999999999 788999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCC
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 792 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~ 792 (949)
+.+++|+|++++|++|+.||+|++||+.+++ .......+...+.++. |+|+|+.
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~-------~spdg~~------------------ 178 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIA-------YSPDGKY------------------ 178 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEE-------ECTTSSE------------------
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEE-------ECCCCCE------------------
Confidence 9999999999999999999999999999886 2333344556677766 8888774
Q ss_pred ceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeE
Q 002234 793 PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 793 v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~ 872 (949)
+++|+.||.|++||+.+++.+ ..+.+|..+|++++|+|++.++++++.|+ +|++||++++...
T Consensus 179 ----------lasg~~dg~i~iwd~~~~~~~------~~~~~h~~~v~~l~~spd~~~l~s~s~dg-~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 179 ----------LASGAIDGIINIFDIATGKLL------HTLEGHAMPIRSLTFSPDSQLLVTASDDG-YIKIYDVQHANLA 241 (321)
T ss_dssp ----------EEEEETTSCEEEEETTTTEEE------EEECCCSSCCCEEEECTTSCEEEEECTTS-CEEEEETTTCCEE
T ss_pred ----------EEEEcCCCeEEEEECCCCcEE------EEEcccCCceeEEEEcCCCCEEEEEcCCC-eEEEEECCCccee
Confidence 889999999999999999877 45678899999999999999999999997 9999999999999
Q ss_pred Eeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 873 GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 873 ~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
..+. |...|.+++|+|+ ++++|+.||+|++||+.+++++.++ .+|.+.|++++|+|+|++|++++.||+|++||..
T Consensus 242 ~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8888 7788999999998 8999999999999999999999999 4899999999999999999999999999999974
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=339.77 Aligned_cols=276 Identities=14% Similarity=0.118 Sum_probs=223.4
Q ss_pred hccccccccccEEEEecCCCCeEEEecC-------------CceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecC
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHR-------------ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~-------------~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~ 696 (949)
+....|++||..|++++ |+++|+||.. ........|...|.+++|+|+ .+++|+.||+|+|||+.
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELD 111 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEecc
Confidence 44567888999998877 7889999742 111223346778999999997 99999999999999999
Q ss_pred CCceee--eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 697 GSILHL--IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 697 t~~~~~--i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
+++... ...+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++ .......|...|.++. |+|++..
T Consensus 112 ~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~-------~~~~~~~ 183 (344)
T 4gqb_B 112 ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVA-------ASPHKDS 183 (344)
T ss_dssp TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEE-------ECSSCTT
T ss_pred CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEE-------ecCCCCC
Confidence 884222 22345899999999999999999999999999999999985 2233345677888777 7777653
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEE
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTAS 853 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s 853 (949)
.+++|+.||+|++||+++++....+. ...|...+.+++|+| ++.++++
T Consensus 184 ---------------------------~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 184 ---------------------------VFLSCSEDNRILLWDTRCPKPASQIG----CSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp ---------------------------EEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEE
T ss_pred ---------------------------ceeeeccccccccccccccceeeeee----cceeeccceeeeecCCCCcceEE
Confidence 37899999999999999998774422 234567899999997 5678889
Q ss_pred EECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 854 TSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
++.|| +|++||+++++++.++. |...|++++|+|+ ++++|+.||+|+|||..+++.+. + .+|.+.|++++|+|
T Consensus 233 g~~dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 233 GDENG-TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDATWSP 309 (344)
T ss_dssp EETTS-EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEEECS
T ss_pred eccCC-cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEeC
Confidence 99886 99999999999999888 7889999999987 68999999999999999988654 5 48999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCC
Q 002234 930 NEE-FLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 930 dg~-~L~sgs~Dg~I~iWdl~ 949 (949)
+++ +|++|+.||+|++|++.
T Consensus 310 ~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECC
T ss_pred CCCeEEEEEcCCCeEEEEECC
Confidence 986 67799999999999974
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-35 Score=331.04 Aligned_cols=270 Identities=16% Similarity=0.257 Sum_probs=241.6
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
....+.+|.+.|++++|+|+ +|++|+.||+|++||..++ ..+..+..|...|.+++|+|+|++|++|+.|++|++|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999997 9999999999999999998 7888899999999999999999999999999999999
Q ss_pred ECCCCe---eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEeC--
Q 002234 738 SIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ-- 800 (949)
Q Consensus 738 d~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~~-- 800 (949)
|+.+++ ........|...+.++. |++++. +++++.|+.+++|+. ...|.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCR-------FLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEE-------EEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ECccCCCcceeEEEecCCCccEEEEE-------ECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 998763 12233446777888877 888775 888999999999973 45788999986
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC--
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-- 878 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~-- 878 (949)
..+++|+.||+|++||++++... ..+.+|...|++++|+|++.++++++.|| +|++||+++++.+..+.+.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~~~~ 269 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFPNGNAFATGSDDA-TCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCTTC
T ss_pred CEEEEEeCCCcEEEEECCCCeeE------EEEcCCcCCEEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEccCCc
Confidence 46999999999999999999877 45678899999999999999999999997 9999999999988887743
Q ss_pred -CcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 879 -SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 879 -~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
..|.+++|+|+ ++++|+.||.|++||..+++.+..+ .+|.+.|++++|+|||++|++|+.||+|++||
T Consensus 270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 47999999998 8999999999999999999999999 58999999999999999999999999999997
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-36 Score=362.15 Aligned_cols=306 Identities=16% Similarity=0.244 Sum_probs=250.2
Q ss_pred hHhhhcccccccccc-EEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCcee
Q 002234 627 LRELRKYSPLAFEMV-KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 701 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~-~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~ 701 (949)
|...+....+.+++. .+++++.|++|++||..+ ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ +
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g--~ 223 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--T 223 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--C
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--c
Confidence 344455566777765 699999999999999873 56678899999999999997 9999999999999999998 6
Q ss_pred eeEEec-------ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE-EE-------------------------
Q 002234 702 LIQQIR-------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQ------------------------- 748 (949)
Q Consensus 702 ~i~~l~-------~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~-~~------------------------- 748 (949)
++..+. +|.+.|++++|+|+|++|+|++.|++|++||+.+++... +.
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 777774 799999999999999999999999999999999875221 11
Q ss_pred ----------------eecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC---------------------
Q 002234 749 ----------------VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK--------------------- 791 (949)
Q Consensus 749 ----------------~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~--------------------- 791 (949)
...|...|.++. |+|+|+.+++++.|+.+++|+...
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~-------~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALS-------SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEE-------ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEE-------EeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 113455566655 999999999999999999887321
Q ss_pred -------------------------------------------------------------------------CceEEEE
Q 002234 792 -------------------------------------------------------------------------YPKCLAL 798 (949)
Q Consensus 792 -------------------------------------------------------------------------~v~~v~~ 798 (949)
.+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 1234556
Q ss_pred eC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC-CeeEEe-
Q 002234 799 VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGS- 874 (949)
Q Consensus 799 ~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~-~~~~~~- 874 (949)
++ ..+++|+.|++|++||+.++..... .. .+|...|++++|+|++.++++++.|+ +|++||+.+ ++....
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~----~~-~~h~~~v~~v~fspdg~~las~s~d~-~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEV----KT-IVHPAEITSVAFSNNGAFLVATDQSR-KVIPYSVANNFELAHTN 530 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEE----EE-EECSSCEEEEEECTTSSEEEEEETTS-CEEEEEGGGTTEESCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeee----ec-cCCCCceEEEEECCCCCEEEEEcCCC-CEEEEEcCCCCceeeee
Confidence 54 3588888888888888876643211 12 56889999999999999999999996 999999987 666554
Q ss_pred -ec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc-EE-EEecccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 875 -LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RI-ETLQTGT-SGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 875 -~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~-~~-~~l~~~h-~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+. |...|.+++|+|| +|++|+.|++|++||+.++. .+ ..+ .+| .+.|++++|+||++ |++++.||+|++|+
T Consensus 531 ~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 33 7889999999999 89999999999999998875 33 444 588 88999999999998 99999999999999
Q ss_pred CC
Q 002234 948 LS 949 (949)
Q Consensus 948 l~ 949 (949)
++
T Consensus 609 ~~ 610 (611)
T 1nr0_A 609 VP 610 (611)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-35 Score=359.17 Aligned_cols=310 Identities=17% Similarity=0.202 Sum_probs=258.4
Q ss_pred hhccccccccccEEEEecCC----CCeEEEecCCceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceee
Q 002234 630 LRKYSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~d----g~I~vWd~~~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
.+....+++++.++++++.+ +.|++||..+....+.+|.+.|++++|+|+ .|++|+.|++|++||..++ ++
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~ 182 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KF 182 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EE
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eE
Confidence 34556778899999998875 478999987777888999999999999996 6999999999999999888 78
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee------cCCCceeeeeeccceEEEEeCCCEEE
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH------DIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
..++.+|.+.|++++|+|||++|++|+.|++|++||+.+++....... .|.+.|.++. |+|+|+.++
T Consensus 183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~-------~spdg~~l~ 255 (611)
T 1nr0_A 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT-------WSPDGTKIA 255 (611)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE-------ECTTSSEEE
T ss_pred eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE-------ECCCCCEEE
Confidence 889999999999999999999999999999999999998853222211 5788899888 999999999
Q ss_pred EEEecCeEEEecCC-------------------------------------------------------CCceEEEEeC-
Q 002234 777 VHLRNGKTKLLNSS-------------------------------------------------------KYPKCLALVQ- 800 (949)
Q Consensus 777 ~~~~~g~i~~~~~~-------------------------------------------------------~~v~~v~~~~- 800 (949)
+++.|+++++|+.. ..|.+++|++
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD 335 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence 99999999999742 3467788875
Q ss_pred -CEEEEEECCCcEEEEECCCCceeeeecc-cc------------------------------------------------
Q 002234 801 -GKVYCGCQDGAIQEIDLATGTFATIQTG-HR------------------------------------------------ 830 (949)
Q Consensus 801 -~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~------------------------------------------------ 830 (949)
..+++++.|++|++||+.++.....+.. +.
T Consensus 336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 4699999999999999988765332100 00
Q ss_pred ---------------------------cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee--EEeecCCCcE
Q 002234 831 ---------------------------KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLPTLSEV 881 (949)
Q Consensus 831 ---------------------------~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~--~~~~~~~~~v 881 (949)
....|...+.+++|+|++.++++++.|+ +|++||+.++.. .....|...|
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~-~v~lwd~~~~~~~~~~~~~h~~~v 494 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS-KVHVYKLSGASVSEVKTIVHPAEI 494 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS-EEEEEEEETTEEEEEEEEECSSCE
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCC-eEEEEEccCCceeeeeccCCCCce
Confidence 0001345688999999999999999997 999999987654 3444588999
Q ss_pred EEEEEcCC--EEEEEECCCeEEEEECCC-CcEEEE-eccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 882 RAMVVSSE--LVYLGCKGGTVEIWDQKR-QIRIET-LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 882 ~~l~~s~d--~l~sgs~dg~I~vwd~~~-~~~~~~-l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++++|+|| ++++++.|++|++||+.+ ++.... ...+|.+.|++++|+|||++|++|+.||+|++||++
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 99999999 899999999999999987 665544 334599999999999999999999999999999974
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-36 Score=338.33 Aligned_cols=281 Identities=15% Similarity=0.136 Sum_probs=229.1
Q ss_pred hHhhhccccccccccEEEEecC------CCCeEEEecCC------ceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEE
Q 002234 627 LRELRKYSPLAFEMVKVLSNGH------DSSADFWNHRE------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVW 693 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~------dg~I~vWd~~~------~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vW 693 (949)
|...+....|++||.+|++++. |++|++|+..+ ......+|.+.|++++|+|+ .+++++.||+|+||
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lW 120 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELW 120 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEe
Confidence 4455667889999999999997 67788888652 23345579999999999997 88889999999999
Q ss_pred ecCCCceeee--EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeC
Q 002234 694 TGRGSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 771 (949)
Q Consensus 694 d~~t~~~~~i--~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~ 771 (949)
|+.+++.... ....+|.+.|++++|+|+|++|++|+.||+|++||+.+++. ......|...|.++. |+|+
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~-------~s~~ 192 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVA-------ACPG 192 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTT
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEE-------EccC
Confidence 9998732222 23458999999999999999999999999999999999852 223334667777776 7776
Q ss_pred CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC-ceE
Q 002234 772 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVY 850 (949)
Q Consensus 772 g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~ 850 (949)
+.. .+++++.||.|++||+++++.... .....|...+++++|+|+ +.+
T Consensus 193 ~~~---------------------------~~~s~~~dg~v~~wd~~~~~~~~~----~~~~~~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 193 KDT---------------------------IFLSCGEDGRILLWDTRKPKPATR----IDFCASDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp CSS---------------------------CEEEEETTSCEEECCTTSSSCBCB----CCCTTCCSCEEEEEECTTSTTE
T ss_pred CCc---------------------------eeeeeccCCceEEEECCCCceeee----eeeccccccccchhhhhcccce
Confidence 643 378999999999999999887643 233457788999999986 568
Q ss_pred EEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEE
Q 002234 851 TASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 926 (949)
Q Consensus 851 l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~ 926 (949)
+++++.|+ .|++||+++++++..+. +...|++++|+|+ ++++|+.||+|+|||+++++.+..+ +|.+.|++++
T Consensus 242 la~g~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~va 318 (357)
T 4g56_B 242 FACGDETG-NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVA 318 (357)
T ss_dssp EEEEESSS-CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEE
T ss_pred EEEeeccc-ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEE
Confidence 88888886 99999999999998888 7789999999987 6899999999999999999888766 6999999999
Q ss_pred EeC-CCCEEEEEeCCCcEEEEeCC
Q 002234 927 LDD-NEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 927 ~sp-dg~~L~sgs~Dg~I~iWdl~ 949 (949)
|+| |+++|+||+.||+|++|++.
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC
T ss_pred EeCCCCCEEEEEcCCCeEEEEECC
Confidence 998 89999999999999999984
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.6e-35 Score=324.46 Aligned_cols=272 Identities=17% Similarity=0.279 Sum_probs=237.4
Q ss_pred eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc---eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcE
Q 002234 661 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 734 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~---~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I 734 (949)
...+.+|.+.|++++|+|+ +|+||+.||+|++||+.+.. ..++..+.+|...|++++|+|+|++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 4568899999999999973 89999999999999987532 14577899999999999999999999999999999
Q ss_pred EEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-----------CCCceEEEEeCC--
Q 002234 735 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQG-- 801 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-----------~~~v~~v~~~~~-- 801 (949)
++||+.+++ .......|...|.++. |+|++..+++++.|+.+++|+. ...+.++.+.+.
T Consensus 90 ~~wd~~~~~-~~~~~~~h~~~v~~~~-------~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 90 RLWDVATGE-TYQRFVGHKSDVMSVD-------IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEETTTTE-EEEEEECCSSCEEEEE-------ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEECCCCC-eeEEEccCCCcEEEEE-------EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 999999986 2334456788999988 9999999999999999999984 456778888753
Q ss_pred ------EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEee
Q 002234 802 ------KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 875 (949)
Q Consensus 802 ------~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~ 875 (949)
.+++|+.|+.|++||+.+++.. ..+.+|..+|++++|+|++.++++++.|| +|++||+.+++.+..+
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIE------ADFIGHNSNINTLTASPDGTLIASAGKDG-EIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEE------EEECCCCSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhh------eeecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEe
Confidence 6999999999999999988766 45678999999999999999999999997 9999999999999999
Q ss_pred cCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecc-------ccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 876 PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------GTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 876 ~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~-------~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
.++..+.+++|+|+ ++++++ ++.+++|++..+..+..+.. .|...+.+++|+|||++|++|+.||+|++|
T Consensus 235 ~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 235 SAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp ECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 98889999999999 555555 55699999998887776632 245679999999999999999999999999
Q ss_pred eC
Q 002234 947 GL 948 (949)
Q Consensus 947 dl 948 (949)
|+
T Consensus 314 d~ 315 (319)
T 3frx_A 314 QV 315 (319)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=329.47 Aligned_cols=279 Identities=17% Similarity=0.277 Sum_probs=230.4
Q ss_pred hccccccccccEEEEecCCCCeEEEecCCc-----eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHREL-----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~-----~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
+....+++++.+|++|+.|++|++||.... .....+|.+.|++++|+|+ +|++|+.||+|++||..++...++
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 345667889999999999999999998742 1234689999999999996 999999999999999988766678
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEE-EeecCCCceeeeeeccceEEEEeCCCEEEEEEec
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 781 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~-~~~~-~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~ 781 (949)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. ..+. ....|...|.++. |+|+++.
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~------- 164 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-------WHPSQEL------- 164 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE-------ECSSSSC-------
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE-------ECCCCCE-------
Confidence 8999999999999999999999999999999999998764 2222 2334566777766 7777764
Q ss_pred CeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEE
Q 002234 782 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 861 (949)
Q Consensus 782 g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I 861 (949)
+++|+.|++|++||..++..... ..+.+|...|++++|+|++.++++++.|+ +|
T Consensus 165 ---------------------l~s~s~d~~i~~w~~~~~~~~~~----~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-~v 218 (345)
T 3fm0_A 165 ---------------------LASASYDDTVKLYREEEDDWVCC----ATLEGHESTVWSLAFDPSGQRLASCSDDR-TV 218 (345)
T ss_dssp ---------------------EEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECTTSSEEEEEETTS-CE
T ss_pred ---------------------EEEEeCCCcEEEEEecCCCEEEE----EEecCCCCceEEEEECCCCCEEEEEeCCC-eE
Confidence 88999999999999988764322 45678999999999999999999999997 99
Q ss_pred EEEECCCC---------------eeEEeec--CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc--------EEEEe
Q 002234 862 KMWSTSNY---------------NMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI--------RIETL 914 (949)
Q Consensus 862 ~iwd~~~~---------------~~~~~~~--~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~--------~~~~l 914 (949)
++||.... .++.++. |...|++++|+|+ .+++++.|+.|++|+...+. .....
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 99996321 2334444 6788999999998 89999999999999987542 12223
Q ss_pred ccccccceeEEEEeCCC-CEEEEEeCCCcEEEEeCC
Q 002234 915 QTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg-~~L~sgs~Dg~I~iWdl~ 949 (949)
..+|.+.|++++|+|++ .+|++|+.||+|++|++.
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 35899999999999998 599999999999999963
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.4e-35 Score=326.13 Aligned_cols=271 Identities=18% Similarity=0.262 Sum_probs=239.5
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
....+.+|.+.|++++|+|+ +|+||+.||+|++||..++ .....+..|...|.+++|+|+|+++++|+.|+++++|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 45678899999999999997 9999999999999999988 6778888899999999999999999999999999999
Q ss_pred ECCCCe-----eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEeC
Q 002234 738 SIGNEE-----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ 800 (949)
Q Consensus 738 d~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~~ 800 (949)
++..+. ........|...|.++. |+|++..+++++.|+++++|+. ...|.++.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACS-------FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEE-------ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred EEeccccccccccceeeeccCCcEEEEE-------EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 986531 11122234677787777 9999999999999999999983 45677888864
Q ss_pred ----CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 801 ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
..+++|+.||+|++||+++++.. ..+.+|...|++++|+|++.++++++.|+ +|++||+++++.+..+.
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCV------QAFETHESDVNSVRYYPSGDAFASGSDDA-TCRLYDLRADREVAIYS 279 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEECCCCcEEEEEc
Confidence 47999999999999999999887 45678899999999999999999999997 99999999998877776
Q ss_pred C---CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 877 T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 877 ~---~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+ ...+.+++|+|+ ++++|+.|++|++||+.+++.+..+ .+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3 347899999998 8999999999999999999999988 58999999999999999999999999999996
No 11
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-34 Score=320.27 Aligned_cols=275 Identities=21% Similarity=0.320 Sum_probs=238.5
Q ss_pred ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc---eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCc
Q 002234 660 LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 733 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~---~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~ 733 (949)
...++.||++.|++|+|+|+ +|+||+.||+|+|||+.+++ ..+...+.+|...|.+++|+|+|++|++|+.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45578999999999999984 89999999999999997653 2467788999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-------------CCCceEEEEeC
Q 002234 734 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ 800 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-------------~~~v~~v~~~~ 800 (949)
|++|+...+... .....+...+.... +++++..+++++.|+.+++|+. ...+.++.+.+
T Consensus 110 i~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 110 LRLWDLTTGTTT-RRFVGHTKDVLSVA-------FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp EEEEETTTTEEE-EEEECCSSCEEEEE-------ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred ceEEeeccccee-eeecCCCCceeEEE-------EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 999999988532 23333444555544 8899999999999999999984 34577788764
Q ss_pred ----CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 801 ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
..+++++.|+.|++||+.+++.. ..+.+|..+|++++|+|++.++++++.|+ +|++||+++++.+..+.
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~ 254 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLK------TNHIGHTGYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEGKHLYTLD 254 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCcee------eEecCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEEeccCceeeeec
Confidence 35789999999999999999887 45678899999999999999999999997 99999999999999999
Q ss_pred CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEec--------cccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 877 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ--------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 877 ~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~--------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+...+.++.|+|+ .+++++.|+.|++||++++..+..+. .+|...|++++|+|||++|++|+.||+|+|||
T Consensus 255 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 255 GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999999998 78888899999999999988776663 25788999999999999999999999999999
Q ss_pred CC
Q 002234 948 LS 949 (949)
Q Consensus 948 l~ 949 (949)
++
T Consensus 335 ~~ 336 (340)
T 4aow_A 335 VT 336 (340)
T ss_dssp EE
T ss_pred CC
Confidence 73
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.3e-35 Score=322.35 Aligned_cols=277 Identities=19% Similarity=0.255 Sum_probs=235.9
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
|...+....+++++.++++++.||+|++||..+ ....+..|..+|.+++|+|+ +|++|+.||+|++||+.++ ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~ 89 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EK 89 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cE
Confidence 334456677888999999999999999999984 46677889999999999996 9999999999999999999 78
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeC-CCEEEEEEec
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ-GAGIKVHLRN 781 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~-g~~l~~~~~~ 781 (949)
+..+.+|.+.|++++|+|++++|++|+.||+|++||++++.........|...|.++. |+|+ +.
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~~-------- 154 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-------FNPKDPS-------- 154 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE-------ECTTCTT--------
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE-------ECCCCCC--------
Confidence 8999999999999999999999999999999999999887433333345566676666 6663 33
Q ss_pred CeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC--CceEEEEEECCCC
Q 002234 782 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGA 859 (949)
Q Consensus 782 g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~Dg~ 859 (949)
.+++|+.||+|++||+.++..... ...+|...+..+.|++ ++.++++++.|+
T Consensus 155 --------------------~l~sgs~D~~v~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~- 208 (304)
T 2ynn_A 155 --------------------TFASGCLDRTVKVWSLGQSTPNFT-----LTTGQERGVNYVDYYPLPDKPYMITASDDL- 208 (304)
T ss_dssp --------------------EEEEEETTSEEEEEETTCSSCSEE-----EECCCTTCEEEEEECCSTTCCEEEEEETTS-
T ss_pred --------------------EEEEEeCCCeEEEEECCCCCccce-----eccCCcCcEEEEEEEEcCCCCEEEEEcCCC-
Confidence 489999999999999988765532 2235667899999975 788999999997
Q ss_pred EEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC--EE
Q 002234 860 AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FL 934 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~--~L 934 (949)
+|++||+++++++.++. |...|.+++|+|+ ++++|+.||+|++||..+++.+.++. .|...+++++|+|++. ++
T Consensus 209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYI 287 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCE
T ss_pred eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEE
Confidence 99999999999999988 7889999999998 79999999999999999999999994 7888999999999885 57
Q ss_pred EEEeCCCcEEEEeC
Q 002234 935 VIGTSDGRIQAWGL 948 (949)
Q Consensus 935 ~sgs~Dg~I~iWdl 948 (949)
++|+.|| +.+|++
T Consensus 288 asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 288 ASGFDNG-FTVLSL 300 (304)
T ss_dssp EEEETTE-EEEEEC
T ss_pred EEecCCc-eEEEEe
Confidence 7777665 667765
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-34 Score=346.00 Aligned_cols=293 Identities=23% Similarity=0.379 Sum_probs=258.4
Q ss_pred ccccccccccEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
....+.+++..+++++.|++|++|+.. .....+.+|.+.|++++|+|+ ++++++.||+|++||..+. .+..+.+
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~ 342 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTG 342 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeC
Confidence 345567789999999999999999987 456778899999999999997 9999999999999998765 5677889
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
|...|.+++|+|+|+++++|+.||+|++||..... ......+...|.++. |+|+|+.+++++.++.+++|+
T Consensus 343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~--~~~~~~~~~~v~~~~-------~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVA-------FSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE--EEEEECCSSCEEEEE-------ECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE--EEEecCCCCCeEEEE-------ECCCCCEEEEEeCCCEEEEEe
Confidence 99999999999999999999999999999976542 233345678888887 999999999999999999997
Q ss_pred C-----------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 789 S-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 789 ~-----------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
. ...|.+++|++ ..+++++.|+.|++||.. ++.. ..+.+|..+|++++|+|++.++++++
T Consensus 414 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~------~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLL------QTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEE------EEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEE------EEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 3 45688899986 479999999999999964 4444 45678899999999999999999999
Q ss_pred CCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC
Q 002234 856 LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
.|+ +|++||. +++++..+. |...|++++|+|| ++++++.||.|++||. +++++.++ .+|.+.|++++|+|||+
T Consensus 487 ~d~-~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 487 DDK-TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp TTS-EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSS
T ss_pred CCC-EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCC
Confidence 986 9999995 677777777 7889999999998 8999999999999996 67888888 48999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q 002234 933 FLVIGTSDGRIQAWG 947 (949)
Q Consensus 933 ~L~sgs~Dg~I~iWd 947 (949)
+|+|++.||+|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999997
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.2e-35 Score=326.05 Aligned_cols=275 Identities=15% Similarity=0.191 Sum_probs=223.1
Q ss_pred cccEEEEecCCCCeEEEecCC---------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 639 EMVKVLSNGHDSSADFWNHRE---------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~---------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
++.+|++|+.|++|++||..+ ....+.+|.+.|++++|+|+ ++++|+.||+|++||+.++ +.+..+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~ 115 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFV 115 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEc
Confidence 788999999999999999852 34567899999999999996 9999999999999999999 7889999
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEE-eecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
+|.+.|++++|+|++++|++|+.|++|++||+......... ...+...+.++. |+|++...
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------- 177 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR-------YSPIMKSA----------- 177 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE-------ECCCCCSC-----------
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee-------eccccccc-----------
Confidence 99999999999999999999999999999999854221111 114566777776 77765310
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 866 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~ 866 (949)
..+......+++++.||.|++||.. +... ..+.+|..+|++++|+|++.++++++.|+ .|++||+
T Consensus 178 -------~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~------~~~~~h~~~v~~~~~s~~g~~l~sgs~dg-~v~iwd~ 242 (343)
T 2xzm_R 178 -------NKVQPFAPYFASVGWDGRLKVWNTN-FQIR------YTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDI 242 (343)
T ss_dssp -------SCCCSSCCEEEEEETTSEEEEEETT-TEEE------EEEECCSSCEEEEEECTTSSEEEEEETTC-EEEEEES
T ss_pred -------cccCCCCCEEEEEcCCCEEEEEcCC-Ccee------EEEcCccccceEEEECCCCCEEEEEcCCC-eEEEEEC
Confidence 0000112368999999999999943 3333 45678999999999999999999999997 9999999
Q ss_pred C-CCeeEEeecCCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEE--Eec----------cccccceeEEEEeCCCC
Q 002234 867 S-NYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIE--TLQ----------TGTSGKVQCMALDDNEE 932 (949)
Q Consensus 867 ~-~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~--~l~----------~~h~~~I~~l~~spdg~ 932 (949)
. .......+.+...|.+++|+|+ .+++++.|+.|++||+.+++... .+. .+|...|++++|+|+|+
T Consensus 243 ~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 243 LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred CCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 4 4455556656778999999999 45556678889999998876443 332 16778899999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 002234 933 FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 933 ~L~sgs~Dg~I~iWdl 948 (949)
+|++|+.||+|++|++
T Consensus 323 ~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CEEEEETTSEEEEEEE
T ss_pred eEEEecCCceEEEEEE
Confidence 9999999999999996
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-35 Score=335.41 Aligned_cols=282 Identities=18% Similarity=0.288 Sum_probs=239.8
Q ss_pred eEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEE
Q 002234 652 ADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 727 (949)
Q Consensus 652 I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~S 727 (949)
+..|+..+ +...+.+|.+.|++++|+|+ +|+||+.||+|+|||..++ +....+.+|...|.+++|+|+|++|++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEE
Confidence 44566653 55778999999999999997 9999999999999999999 788999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCee------EEEEeecCCCceeeeeeccceEEEEeCC-CEEEEEEecCeEEEecC-----------
Q 002234 728 GSLDKTARVWSIGNEEI------HCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNS----------- 789 (949)
Q Consensus 728 gs~Dg~I~vWd~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~fsp~g-~~l~~~~~~g~i~~~~~----------- 789 (949)
|+.|+++++||+.+... .......|.+.+.++. |.|++ ..+++++.|+++++|+.
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~-------~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ-------YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB-------CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE-------EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 99999999999976320 1112234566777776 77764 56899999999999974
Q ss_pred ------CCCceEEEEeC---CEEEEEECCCcEEEEECCCC-ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCC
Q 002234 790 ------SKYPKCLALVQ---GKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 859 (949)
Q Consensus 790 ------~~~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~ 859 (949)
...+.++.+.+ +.+++|+.||+|++||++.. ... ..+.+|...|++++|+|++.++++++.|+
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~- 271 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV------RTYHGHEGDINSVKFFPDGQRFGTGSDDG- 271 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC------EEECCCSSCCCEEEECTTSSEEEEECSSS-
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce------EEECCcCCCeEEEEEecCCCeEEEEcCCC-
Confidence 23577788753 57999999999999999844 444 45678999999999999999999999997
Q ss_pred EEEEEECCCCeeEEeecCC--------CcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec---cccccceeEEE
Q 002234 860 AVKMWSTSNYNMVGSLPTL--------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ---TGTSGKVQCMA 926 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~~~--------~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~---~~h~~~I~~l~ 926 (949)
+|++||++++..+..+... ..+.+++|+|+ ++++|+.||.|++||..+++.+..+. .+|.+.|++++
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 9999999999988877621 24889999998 89999999999999999998877762 47999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCC
Q 002234 927 LDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 927 ~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|+|||++|++|+.||+|++|+++
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECC
T ss_pred ECCCCCEEEEeeCCCCEEEEecC
Confidence 99999999999999999999974
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=319.29 Aligned_cols=278 Identities=16% Similarity=0.227 Sum_probs=224.2
Q ss_pred ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEe-cc-cCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI-RE-HTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l-~~-H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
....+.+|.++|++++|+|++|++|+.||+|++||+.++.......+ .+ |.+.|++++|+|++++|++|+.|++|++|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 35667899999999999999999999999999999988644556666 44 99999999999999999999999999999
Q ss_pred ECCCCe-----eE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC----------------CCCceE
Q 002234 738 SIGNEE-----IH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS----------------SKYPKC 795 (949)
Q Consensus 738 d~~~~~-----~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~----------------~~~v~~ 795 (949)
|+..+. .. ......|...|.++. |+|+|+++++++.|+.+++|+. ...|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-------~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVA-------WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEE-------ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEE-------ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 986421 12 223345778898888 9999999999999999999975 234788
Q ss_pred EEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC--ceEEEEEECCCCEEEEEECCCC--
Q 002234 796 LALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNY-- 869 (949)
Q Consensus 796 v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~Dg~~I~iwd~~~~-- 869 (949)
+.|++ ..|++|+.|++|++||..++..... ..+.+|...|.+++|+|+ +.++++++.|+ +|++||+.++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~ 233 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECV----AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-TVRVWKYMGDDE 233 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECCSSSSCEEEEEETTS-CEEEEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEE----EEccCCCCcEEEEEecCCCCeeEEEEEeCCC-eEEEEEecCCCc
Confidence 88876 5799999999999999887632111 456789999999999998 77899999996 9999998754
Q ss_pred ------eeEEeec--CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCc--EEEEecccccc-ceeEEEEeC--CCCEEE
Q 002234 870 ------NMVGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI--RIETLQTGTSG-KVQCMALDD--NEEFLV 935 (949)
Q Consensus 870 ------~~~~~~~--~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~--~~~~l~~~h~~-~I~~l~~sp--dg~~L~ 935 (949)
.+...+. |...|.+++|+++ .+++|+.||+|++||..+++ .......+|.. .|++++|+| ++++|+
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred cccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 3444554 6789999999987 89999999999999998874 34444357876 899999999 789999
Q ss_pred EEeCCCcEEEEeCC
Q 002234 936 IGTSDGRIQAWGLS 949 (949)
Q Consensus 936 sgs~Dg~I~iWdl~ 949 (949)
+|+.||+|++||+.
T Consensus 314 s~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 314 TGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTSEEEEEEC-
T ss_pred EecCCCcEEEEEec
Confidence 99999999999974
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.1e-34 Score=323.32 Aligned_cols=278 Identities=21% Similarity=0.335 Sum_probs=227.4
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCC------------------CceEEEEEeCC--EEEEEeC
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSEN------------------GKVLSIACFRD--KIFSGHS 686 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~------------------~~V~~l~~s~d--~lasgs~ 686 (949)
..+....++++|.+|++|+ ++++++|+..+ ....+..|. ..|++++|+|+ +|++|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 3455667888999999976 78999999873 333333332 34999999997 9999999
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceE
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 766 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 766 (949)
||+|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|++||+++++ +.....+...+.++.
T Consensus 144 d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~------ 213 (393)
T 1erj_A 144 DRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--CSLTLSIEDGVTTVA------ 213 (393)
T ss_dssp TSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEE------
T ss_pred CCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--eEEEEEcCCCcEEEE------
Confidence 999999999999 7889999999999999999999999999999999999999985 333333455566655
Q ss_pred EEEe-CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccc-ccccCCCCCEEEEEE
Q 002234 767 CFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-RKLLGKANPVHALQV 844 (949)
Q Consensus 767 ~fsp-~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~l~~ 844 (949)
|+| +|+ .+++|+.||.|++||+.++.....+... ....+|...|.+++|
T Consensus 214 -~~~~~~~----------------------------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 214 -VSPGDGK----------------------------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp -ECSTTCC----------------------------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred -EECCCCC----------------------------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 666 554 4889999999999999999877544221 223679999999999
Q ss_pred eCCceEEEEEECCCCEEEEEECCCCe------------eEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc
Q 002234 845 HNGLVYTASTSLDGAAVKMWSTSNYN------------MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 845 ~~~~~~l~s~s~Dg~~I~iwd~~~~~------------~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~ 909 (949)
+|++.++++++.|+ +|++||+++.. +...+. |...|.+++|+|+ ++++|+.||.|++||..+++
T Consensus 265 ~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 265 TRDGQSVVSGSLDR-SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp CTTSSEEEEEETTS-EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred CCCCCEEEEEeCCC-EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 99999999999997 99999997632 333444 7788999999987 89999999999999999999
Q ss_pred EEEEeccccccceeEEEEeC------CCCEEEEEeCCCcEEEEeC
Q 002234 910 RIETLQTGTSGKVQCMALDD------NEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 910 ~~~~l~~~h~~~I~~l~~sp------dg~~L~sgs~Dg~I~iWdl 948 (949)
++..+ .+|.+.|.+++|++ ++++|++|+.||+|++|++
T Consensus 344 ~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 344 PLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999 48999999999986 6889999999999999996
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.1e-34 Score=311.77 Aligned_cols=245 Identities=19% Similarity=0.265 Sum_probs=216.7
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
...++.+|.+.|++++|+|+ +|++|+.||+|++||+.++ ..+..+..|..+|.++.|+|++++|++|+.|++|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45678899999999999997 9999999999999999999 7889999999999999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
|+.+++ .......|.+.|.++. |+|+++. +++|+.||+|++||+
T Consensus 83 d~~~~~-~~~~~~~h~~~v~~~~-------~~~~~~~----------------------------l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 83 NYNTGE-KVVDFEAHPDYIRSIA-------VHPTKPY----------------------------VLSGSDDLTVKLWNW 126 (304)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEE-------ECSSSSE----------------------------EEEEETTSCEEEEEG
T ss_pred ECCCCc-EEEEEeCCCCcEEEEE-------EcCCCCE----------------------------EEEECCCCeEEEEEC
Confidence 999986 3333445777888887 8888764 889999999999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcC--C--E
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSS--E--L 890 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~--d--~ 890 (949)
+++.... ..+.+|...|.+++|+| ++.++++++.|+ +|++||++++.....+. +...+..+.|+| + +
T Consensus 127 ~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 127 ENNWALE-----QTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp GGTTEEE-----EEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred CCCcchh-----hhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence 8875432 45678999999999998 678999999997 99999998877666554 457899999976 3 8
Q ss_pred EEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 891 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 891 l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+++|+.||+|++||+++++++.++ .+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999999999999999 4899999999999999999999999999999973
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-33 Score=336.49 Aligned_cols=295 Identities=23% Similarity=0.394 Sum_probs=258.9
Q ss_pred ccccccccccEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
....+.+++.++++++.|+.|++||.. +....+.+|...|.+++|+|+ .+++++.|++|++||... +.+..+.+
T Consensus 225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---~~~~~~~~ 301 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQTLTG 301 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---cEEEEEec
Confidence 345567789999999999999999987 467788899999999999997 999999999999999765 47788899
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
|...|++++|+|+++++++++.||+|++||...... .....+...+.++. |+|+|+.++++..++.+++|+
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~--~~~~~~~~~v~~~~-------~s~~g~~l~~~~~dg~v~~~~ 372 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVA-------FSPDGQTIASASDDKTVKLWN 372 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--EEECCCSSCEEEEE-------ECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--EEEeCCCCCEEEEE-------ECCCCCEEEEEeCCCEEEEEc
Confidence 999999999999999999999999999999987643 33445677888877 999999999999999999997
Q ss_pred C-----------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 789 S-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 789 ~-----------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
. ...|.+++|++ ..+++++.|+.|++||. +++.. ..+.+|...|++++|+|++.++++++
T Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~------~~~~~~~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL------QTLTGHSSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEE------EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEE------EEecCCCCCeEEEEECCCCCEEEEEc
Confidence 3 45788999986 45999999999999995 45554 45678999999999999999999999
Q ss_pred CCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC
Q 002234 856 LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
.|+ +|++||.. ++.+..+. |...|.+++|+|| ++++++.|++|++||. +++.+..+ .+|.+.|++++|+|||+
T Consensus 446 ~d~-~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 446 DDK-TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp TTS-EEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSS
T ss_pred CCC-EEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCCC
Confidence 996 99999974 55666665 7899999999998 8999999999999995 67888888 48999999999999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 002234 933 FLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 933 ~L~sgs~Dg~I~iWdl~ 949 (949)
+|++++.||+|++||.+
T Consensus 522 ~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 522 TIASASDDKTVKLWNRN 538 (577)
T ss_dssp CEEEEETTSEEEEECTT
T ss_pred EEEEEECcCEEEEEeCC
Confidence 99999999999999963
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-33 Score=310.22 Aligned_cols=277 Identities=18% Similarity=0.285 Sum_probs=235.6
Q ss_pred HhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 628 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 628 ~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
...+....+.+++.++++++.||.|++|+.. .....+.+|...|.+++|+|+ +|++|+.||+|++||+.++ +++
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~ 100 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCL 100 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEE
Confidence 3444556677899999999999999999986 456678899999999999996 9999999999999999998 788
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
..+.+|...|.++.|+|++++|++|+.||+|++||+++++. ......+..++.++. |+|+++.
T Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~-------~~~~~~~--------- 163 (312)
T 4ery_A 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVH-------FNRDGSL--------- 163 (312)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEE-------ECTTSSE---------
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEE-------EcCCCCE---------
Confidence 99999999999999999999999999999999999998752 223334566777776 7777764
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+++|+.||.|++||+++++..... ...+..++..++|+|++.++++++.|+ .|++
T Consensus 164 -------------------l~~~~~d~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i 218 (312)
T 4ery_A 164 -------------------IVSSSYDGLCRIWDTASGQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 218 (312)
T ss_dssp -------------------EEEEETTSCEEEEETTTCCEEEEE-----CCSSCCCEEEEEECTTSSEEEEEETTT-EEEE
T ss_pred -------------------EEEEeCCCcEEEEECCCCceeeEE-----eccCCCceEEEEECCCCCEEEEEcCCC-eEEE
Confidence 889999999999999998876432 234667899999999999999999997 9999
Q ss_pred EECCCCeeEEeec-CCCcE--EEEEEc-CC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE
Q 002234 864 WSTSNYNMVGSLP-TLSEV--RAMVVS-SE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 864 wd~~~~~~~~~~~-~~~~v--~~l~~s-~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg 937 (949)
||+++++.+..+. |.... ....++ ++ ++++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|++++++++
T Consensus 219 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEE
T ss_pred EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEE
Confidence 9999999988887 33322 223333 33 8999999999999999999999999 4899999999999999999999
Q ss_pred e--CCCcEEEEeCC
Q 002234 938 T--SDGRIQAWGLS 949 (949)
Q Consensus 938 s--~Dg~I~iWdl~ 949 (949)
+ .||+|++|+.+
T Consensus 298 ~~~~d~~i~~W~~d 311 (312)
T 4ery_A 298 ALENDKTIKLWKSD 311 (312)
T ss_dssp ECTTTCCEEEEECC
T ss_pred EccCCccEEEecCC
Confidence 7 69999999864
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.2e-33 Score=321.97 Aligned_cols=292 Identities=22% Similarity=0.335 Sum_probs=258.9
Q ss_pred cccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCC
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 712 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 712 (949)
.+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+++++++|+.||+|++||+.++ +.+..+.+|...
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~ 201 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTST 201 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC--cEEEEECCCCCc
Confidence 467789999999999999999987 4567788999999999999999999999999999999999 889999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec----
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN---- 788 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~---- 788 (949)
|.++.|+ ++.+++|+.||+|++||+.+++. ......+...+.++. | +++.+++++.++.+++|+
T Consensus 202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~-------~--~~~~l~~~~~dg~i~iwd~~~~ 269 (445)
T 2ovr_B 202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQ-------Y--DGRRVVSGAYDFMVKVWDPETE 269 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEE-------E--CSSCEEEEETTSCEEEEEGGGT
T ss_pred EEEEEec--CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEE-------E--CCCEEEEEcCCCEEEEEECCCC
Confidence 9999995 57899999999999999998862 223345677777765 4 888999999999999997
Q ss_pred --------CCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE
Q 002234 789 --------SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 789 --------~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
+...+.++.+.+..+++|+.||.|++||+.+++.. ..+.+|...+.++.+++ .++++++.|| .
T Consensus 270 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~--~~l~~~~~dg-~ 340 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI------HTLTGHQSLTSGMELKD--NILVSGNADS-T 340 (445)
T ss_dssp EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE------EEECCCCSCEEEEEEET--TEEEEEETTS-C
T ss_pred cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE------EEEcCCcccEEEEEEeC--CEEEEEeCCC-e
Confidence 35678999998889999999999999999999887 45667888999988864 4788888887 9
Q ss_pred EEEEECCCCeeEEeec----CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEec----cccccceeEEEEeCCCC
Q 002234 861 VKMWSTSNYNMVGSLP----TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ----TGTSGKVQCMALDDNEE 932 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~----~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~----~~h~~~I~~l~~spdg~ 932 (949)
|++||+++++.+..+. |...|.+++|+++++++|+.||.|++||+.+++.+..+. .+|.+.|++++|+|++.
T Consensus 341 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred EEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence 9999999999998886 668899999999999999999999999999999888882 36788999999999999
Q ss_pred EEEEEeCCCc----EEEEeCC
Q 002234 933 FLVIGTSDGR----IQAWGLS 949 (949)
Q Consensus 933 ~L~sgs~Dg~----I~iWdl~ 949 (949)
++++|+.||+ |.+||++
T Consensus 421 ~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECC
T ss_pred EEEEcccCCCCccEEEEEECC
Confidence 9999999998 9999974
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=323.70 Aligned_cols=249 Identities=21% Similarity=0.368 Sum_probs=221.6
Q ss_pred EecC-CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC
Q 002234 655 WNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 731 (949)
Q Consensus 655 Wd~~-~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D 731 (949)
|... .....+.+|.++|++++|+|+ ++++|+.||+|+|||+.++ +...++.+|.+.|++++|+|+|++|++|+.|
T Consensus 94 ~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence 4443 234567899999999999996 9999999999999999999 7889999999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCc
Q 002234 732 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 811 (949)
Q Consensus 732 g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~ 811 (949)
|+|++||+.+++ .......|...|.++. |+|+|+. +++|+.|++
T Consensus 172 ~~i~iwd~~~~~-~~~~~~~h~~~V~~v~-------~~p~~~~----------------------------l~s~s~D~~ 215 (410)
T 1vyh_C 172 MTIKLWDFQGFE-CIRTMHGHDHNVSSVS-------IMPNGDH----------------------------IVSASRDKT 215 (410)
T ss_dssp SCCCEEETTSSC-EEECCCCCSSCEEEEE-------ECSSSSE----------------------------EEEEETTSE
T ss_pred CeEEEEeCCCCc-eeEEEcCCCCCEEEEE-------EeCCCCE----------------------------EEEEeCCCe
Confidence 999999998874 2223345667777776 7777764 889999999
Q ss_pred EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-
Q 002234 812 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE- 889 (949)
Q Consensus 812 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d- 889 (949)
|++||+.++.+. ..+.+|...|.++.+++++.++++++.|+ +|++||+.++.+...+. |...|.+++|+|+
T Consensus 216 i~~wd~~~~~~~------~~~~~h~~~v~~~~~~~~g~~l~s~s~D~-~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 216 IKMWEVQTGYCV------KTFTGHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVECISWAPES 288 (410)
T ss_dssp EEEEETTTCCEE------EEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred EEEEECCCCcEE------EEEeCCCccEEEEEECCCCCEEEEEcCCC-eEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence 999999999887 45678899999999999999999999997 99999999999988887 7889999999984
Q ss_pred ---------------------EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 ---------------------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 ---------------------~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++++|+.||+|++||+.+++++.++ .+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 6999999999999999999999999 489999999999999999999999999999997
Q ss_pred C
Q 002234 949 S 949 (949)
Q Consensus 949 ~ 949 (949)
.
T Consensus 368 ~ 368 (410)
T 1vyh_C 368 K 368 (410)
T ss_dssp T
T ss_pred C
Confidence 3
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-33 Score=316.39 Aligned_cols=297 Identities=12% Similarity=0.151 Sum_probs=249.8
Q ss_pred cccccccccc-EEEEecCCCCeEEEec----CCc--------eeeecC----------CCCceEEEEEeCC--EEEEEeC
Q 002234 632 KYSPLAFEMV-KVLSNGHDSSADFWNH----REL--------VHVDSS----------ENGKVLSIACFRD--KIFSGHS 686 (949)
Q Consensus 632 ~~~~~~~~~~-~l~s~s~dg~I~vWd~----~~~--------~~~~~~----------h~~~V~~l~~s~d--~lasgs~ 686 (949)
....+++++. ++++++.||.|++|+. .+. ...+.. |.+.|++++|+|+ +|++|+.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 3455677888 9999999999999999 532 222222 6889999999996 9999999
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCc-----------
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ----------- 755 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~----------- 755 (949)
||+|++|| .++ ..+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.... ...+...
T Consensus 129 dg~i~i~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 129 NGELRLWN-KTG--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH-FELKETGGSSINAENHSG 204 (425)
T ss_dssp TSCEEEEE-TTS--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE-ECCC--------------
T ss_pred CCeEEEEe-CCC--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE-eeccccCccceeeccccC
Confidence 99999999 455 68888999999999999999999999999999999999998863222 2222222
Q ss_pred ----eeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEeC--CEEEEEECCCcEEEEEC
Q 002234 756 ----IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 756 ----v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~ 817 (949)
+.++. |+|++ .++++..++.+.+|+. ...+.++++++ ..+++++.||.|++||+
T Consensus 205 ~~~~~~~~~-------~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 205 DGSLGVDVE-------WVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp -CCCBSCCE-------EEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred CcceeeEEE-------EcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 55555 88875 4788888999999973 45688999986 46999999999999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEE
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG 894 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sg 894 (949)
.+++.. ..+.+|...|.+++|+|++ ++++++.|+ .|++||+.+++.+..+. +...+.+++|+|+ +++++
T Consensus 277 ~~~~~~------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 277 GNGNSQ------NCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp SSBSCS------EEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccc------eEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 988776 4556788999999999999 888999886 99999999999998887 6789999999998 89999
Q ss_pred ECCCeEEEEECCCCc--------------------EEEEecccccc--ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 895 CKGGTVEIWDQKRQI--------------------RIETLQTGTSG--KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 895 s~dg~I~vwd~~~~~--------------------~~~~l~~~h~~--~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.||.|++||+.+++ .+..+. +|.. .|++++|+|++++|++++.||.|++||+.
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999999888 888884 6765 99999999999999999999999999984
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=308.35 Aligned_cols=244 Identities=20% Similarity=0.336 Sum_probs=215.3
Q ss_pred eeecCCCCceEEEEEeCC------EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEE
Q 002234 662 HVDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 735 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d------~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~ 735 (949)
....+|.+.|++++|+|+ +|+||+.||+|+|||+.++.......+.+|...|.+++|++++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 455789999999999873 89999999999999998875556678999999999999999999999999999999
Q ss_pred EEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEE
Q 002234 736 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 815 (949)
Q Consensus 736 vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iw 815 (949)
+||+.+++. ......+...+.++. |+|+|+. +++|+.||.|++|
T Consensus 106 lWd~~~~~~-~~~~~~~~~~~~~~~-------~spdg~~----------------------------l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 106 LWDLENGKQ-IKSIDAGPVDAWTLA-------FSPDSQY----------------------------LATGTHVGKVNIF 149 (321)
T ss_dssp EEETTTTEE-EEEEECCTTCCCCEE-------ECTTSSE----------------------------EEEECTTSEEEEE
T ss_pred EEECCCCCE-EEEEeCCCccEEEEE-------ECCCCCE----------------------------EEEEcCCCcEEEE
Confidence 999999852 222233455566665 8888875 8889999999999
Q ss_pred ECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEE
Q 002234 816 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY 892 (949)
Q Consensus 816 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~ 892 (949)
|+.+++.. ..+..|...|.+++|+|++.++++++.|| .|++||+++++.+..+. |...|.+++|+|+ +++
T Consensus 150 ~~~~~~~~------~~~~~~~~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 150 GVESGKKE------YSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ETTTCSEE------EEEECSSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEE
T ss_pred EcCCCcee------EEecCCCceEEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEE
Confidence 99999876 34556778999999999999999999997 99999999999999988 7789999999998 899
Q ss_pred EEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 893 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 893 sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+|+.||+|++||+++++...++ .+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 223 s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EECTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcCCCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999998 5899999999999999999999999999999973
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=306.07 Aligned_cols=270 Identities=16% Similarity=0.252 Sum_probs=242.9
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
...+.+|.+.|++++|+|+ +|++|+.||.|++||+.++ +.+..+.+|.+.|++++|+|++++|++++.||+|++||
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 3457899999999999996 9999999999999999998 78899999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec-----CeEEEecCCC----------------------
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-----GKTKLLNSSK---------------------- 791 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~-----g~i~~~~~~~---------------------- 791 (949)
+.+++. .....+...+.++. |+|+++.++++..+ +.+.+|+...
T Consensus 103 ~~~~~~--~~~~~~~~~v~~~~-------~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 103 VSNGQC--VATWKSPVPVKRVE-------FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp TTTCCE--EEEEECSSCEEEEE-------ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred CCCCcE--EEEeecCCCeEEEE-------EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 999853 33333678888887 99999999999998 9999997311
Q ss_pred ---CceEEEEeC--CEEEEEECCCcEEEEECCC-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 792 ---YPKCLALVQ--GKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 792 ---~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
.+.++++++ ..+++|+.||.|++||+.+ +... ..+..|...|.+++|+|++.++++++.|+ .|++||
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d 246 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVD 246 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEE
Confidence 688888875 5799999999999999998 4554 45667889999999999999999999997 999999
Q ss_pred CCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCC--------------eEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 866 TSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG--------------TVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 866 ~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg--------------~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
+++++.+..+.+...+.+++|+|+ ++++++.++ .+++||..+++.+..+ .+|.+.|++++|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 247 VSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISP 325 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECT
T ss_pred CCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECC
Confidence 999999999999999999999998 888888887 8999999999999999 48999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 002234 930 NEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 930 dg~~L~sgs~Dg~I~iWdl~ 949 (949)
|+++|++++.||.|++|+++
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp TSSEEEEEETTSEEEEEEEC
T ss_pred CCCEEEEEcCCCeEEEEECc
Confidence 99999999999999999974
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-32 Score=337.74 Aligned_cols=273 Identities=20% Similarity=0.300 Sum_probs=237.1
Q ss_pred eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc---eeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEE
Q 002234 662 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 735 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~---~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~ 735 (949)
..+.+|++.|++++|+++ +|+||+.||+|++||+.+.. ......+.+|...|.+++|+|+|++|+||+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 357799999999999974 89999999999999997642 135677899999999999999999999999999999
Q ss_pred EEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC---------------CCCceEEEEeC
Q 002234 736 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQ 800 (949)
Q Consensus 736 vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~---------------~~~v~~v~~~~ 800 (949)
+||+.++. .......|...|.++. |+|+++.+++++.|+++++|+. ...|.++.|++
T Consensus 456 vwd~~~~~-~~~~~~~h~~~v~~~~-------~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 456 LWDLAAGV-STRRFVGHTKDVLSVA-------FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEETTTTE-EEEEEECCSSCEEEEE-------ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEECCCCc-ceeEEeCCCCCEEEEE-------EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 99999985 3334456788999988 9999999999999999999983 34588999986
Q ss_pred C----EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 801 G----KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ~----~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
+ .+++|+.||+|++||+++++.. ..+.+|...|++++|+|++.++++++.|| +|++||+.+++.+..+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLR------STLAGHTGYVSTVAVSPDGSLCASGGKDG-VVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-BCEEEETTTTEEEECCB
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEec
Confidence 3 5999999999999999998876 45678999999999999999999999997 99999999999999998
Q ss_pred CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEecccc------------------ccceeEEEEeCCCCEEEEE
Q 002234 877 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGT------------------SGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 877 ~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h------------------~~~I~~l~~spdg~~L~sg 937 (949)
++..+.+++|+|+ .+++++.++.|++||+++++.+..+...+ ...+++++|||||++|++|
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 8889999999999 55556667789999999999888774211 1137899999999999999
Q ss_pred eCCCcEEEEeCC
Q 002234 938 TSDGRIQAWGLS 949 (949)
Q Consensus 938 s~Dg~I~iWdl~ 949 (949)
+.||+|++||+.
T Consensus 681 s~Dg~i~iW~i~ 692 (694)
T 3dm0_A 681 YTDGVIRVWGIG 692 (694)
T ss_dssp ETTSEEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 999999999984
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=323.61 Aligned_cols=304 Identities=12% Similarity=0.126 Sum_probs=254.0
Q ss_pred cccccccccc-EEEEe----------cCCCCeEEEecCCc----eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEe
Q 002234 632 KYSPLAFEMV-KVLSN----------GHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 694 (949)
Q Consensus 632 ~~~~~~~~~~-~l~s~----------s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd 694 (949)
....+++++. +++++ +.|+.|++||..+. ......|.+.|++++|+|+ +|++|+.||+|++||
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~ 95 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYS 95 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEEC
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEee
Confidence 3456677776 89999 89999999999742 2333468999999999997 999999999999999
Q ss_pred cCCC--ceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCe------eEE--EEeecCCCceeeeeecc
Q 002234 695 GRGS--ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE------IHC--VQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 695 ~~t~--~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~------~~~--~~~~~~~~~v~~l~~~~ 763 (949)
+.+. ....+..+.+|.+.|++++|+|+ +++|++++.||+|++||+.+++ ... .....+...+.++.
T Consensus 96 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 172 (416)
T 2pm9_A 96 TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA--- 172 (416)
T ss_dssp CSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE---
T ss_pred cccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE---
Confidence 9871 11578889999999999999998 8999999999999999999874 111 11234667788877
Q ss_pred ceEEEEeC-CCEEEEEEecCeEEEecC------------------CCCceEEEEeCC---EEEEEECCC---cEEEEECC
Q 002234 764 SILCFIPQ-GAGIKVHLRNGKTKLLNS------------------SKYPKCLALVQG---KVYCGCQDG---AIQEIDLA 818 (949)
Q Consensus 764 ~~~~fsp~-g~~l~~~~~~g~i~~~~~------------------~~~v~~v~~~~~---~l~sgs~Dg---~I~iwd~~ 818 (949)
|+|+ +..+++++.++.+++|+. ...+.+++++++ .+++++.|+ .|++||++
T Consensus 173 ----~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 173 ----WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp ----ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred ----eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 9999 788999999999999973 456889999863 699999999 99999999
Q ss_pred CCc-eeeeeccccccc-CCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC---EE
Q 002234 819 TGT-FATIQTGHRKLL-GKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LV 891 (949)
Q Consensus 819 ~~~-~~~~~~~~~~~~-~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d---~l 891 (949)
++. .. ..+. +|...|.+++|+| ++.++++++.|| .|++||+.+++++..+. |...|.+++|+|+ ++
T Consensus 249 ~~~~~~------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 249 NANTPL------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp STTSCS------BCCCSCCSSCEEEEEECSSCSSCEEEEESSS-EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred CCCCCc------EEeecCccCceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence 874 33 4555 7999999999999 999999999997 99999999999999887 6788999999986 79
Q ss_pred EEEECCCeEEEEECCCCcEEEEec----------------------------------cccccceeEEEEeCCCCEEEEE
Q 002234 892 YLGCKGGTVEIWDQKRQIRIETLQ----------------------------------TGTSGKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 892 ~sgs~dg~I~vwd~~~~~~~~~l~----------------------------------~~h~~~I~~l~~spdg~~L~sg 937 (949)
++++.||.|++||+.++....... ..|...+.+++|+|||++|+++
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 401 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT 401 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred EEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence 999999999999998765322210 1156788899999999999999
Q ss_pred eCCCcEEEEeCC
Q 002234 938 TSDGRIQAWGLS 949 (949)
Q Consensus 938 s~Dg~I~iWdl~ 949 (949)
+.||+|+||++.
T Consensus 402 ~~d~~v~~w~~~ 413 (416)
T 2pm9_A 402 PDGKGVSITNPK 413 (416)
T ss_dssp TTSSCBCCBCCC
T ss_pred CCCCeEEEEEec
Confidence 999999999974
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.7e-32 Score=298.61 Aligned_cols=299 Identities=12% Similarity=0.122 Sum_probs=252.6
Q ss_pred ccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce-eeeEEe
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL-HLIQQI 706 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~-~~i~~l 706 (949)
....++++|..++++..++.+..|+... ......+|.+.|++++|+|+ ++++++ ||+|++||+.++.. ..+..+
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~ 91 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL 91 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc
Confidence 3456778999999988888777776553 23334589999999999997 888888 99999999987621 233333
Q ss_pred c--ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 707 R--EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 707 ~--~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
. +|...|.+++|+|++++|++++.||+|++||+.+++.. ......+...+.++. |+|+++.+++++.++.
T Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA-------ISPDSKVCFSCCSDGN 164 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE-------ECTTSSEEEEEETTSC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE-------ECCCCCEEEEEeCCCc
Confidence 3 79999999999999999999999999999999988632 333445677788887 9999999999999999
Q ss_pred EEEecC------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCce
Q 002234 784 TKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 784 i~~~~~------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 849 (949)
+.+|+. ...+.++.+++ ..+++++.||.|++||+++++..... .|..++.+++|+|++.
T Consensus 165 v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------DFTSQIFSLGYCPTGE 237 (337)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECTTSS
T ss_pred EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-------cCCCceEEEEECCCCC
Confidence 999973 45688999975 47999999999999999998876432 3567899999999999
Q ss_pred EEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEE
Q 002234 850 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~ 927 (949)
++++++.|+ .|++||+.+++......|...+.+++|+|+ ++++++.||.|++||+.+++.+... .|...|.+++|
T Consensus 238 ~l~~~~~~~-~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~ 314 (337)
T 1gxr_A 238 WLAVGMESS-NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDI 314 (337)
T ss_dssp EEEEEETTS-CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEE
T ss_pred EEEEEcCCC-cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEE
Confidence 999999887 999999999887766668899999999998 8999999999999999999988665 47889999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl 948 (949)
+|++++|++++.||.|++|++
T Consensus 315 s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 315 SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999996
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-31 Score=312.08 Aligned_cols=288 Identities=18% Similarity=0.248 Sum_probs=240.5
Q ss_pred cccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
.+.+++.++++|+.||+|++||..+ ....+.+|.+.|++++|+++ ++++|+.||+|++||+.++ +++..+.+|.+
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~ 204 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNS 204 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCSS
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCCC
Confidence 4667899999999999999999874 56677899999999999987 9999999999999999999 78999999999
Q ss_pred CEEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 712 AVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 712 ~V~~v~fsp--dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
.|.+++|++ +++++++|+.||+|++||+.++........... ..... +.|++...... ....+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~------~~~~~ 269 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVF-------HTPEENPYFVG------VLRGH 269 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC--SSEEE-------SCGGGCTTEEE------EECCC
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC--cceEe-------eccCCCeEEEE------EccCc
Confidence 999999995 778999999999999999998742211111111 11111 22222211111 22345
Q ss_pred CCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC
Q 002234 790 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
...+.++...++.+++|+.||.|++||+.+++.. ..+.+|...|.+++|+|++.++++++.|| .|++||++++
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~ 342 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------YILSGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLENG 342 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTTT
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC
Confidence 6778888888899999999999999999999887 45677899999999999999999999997 9999999999
Q ss_pred eeEEeec-CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 870 NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 870 ~~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+++..+. |...|.++.++++++++|+.||+|++||+.++....... |...+..++|+|+++++++|+ ||.|++||+
T Consensus 343 ~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 9999998 788999999999999999999999999999988777663 666788999999999999998 999999997
Q ss_pred C
Q 002234 949 S 949 (949)
Q Consensus 949 ~ 949 (949)
.
T Consensus 420 ~ 420 (464)
T 3v7d_B 420 R 420 (464)
T ss_dssp T
T ss_pred C
Confidence 4
No 30
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.8e-32 Score=294.02 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=202.7
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcEEEE
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVW 737 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vW 737 (949)
.++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++..+++.++.+|.+.|++++|+| +|++|+||+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457799999999999996 99999999999999998654467889999999999999986 48999999999999999
Q ss_pred ECCCCeeEEE-EeecCCCceeeeeeccceEEEEeC--CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 738 SIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 738 d~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~fsp~--g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
|+.+++.... ....|...|.++. |+|+ |. .+++|+.||+|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~g~----------------------------~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------MLLVASSDGKVSV 127 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEEEE
T ss_pred EcCCCceEEEEEeecCCCceeEEE-------eCcCCCCc----------------------------EEEEEECCCcEEE
Confidence 9988742222 2234566676666 6665 43 4889999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCC-------------ceEEEEEECCCCEEEEEECCCCe----eEEeec-
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG-------------LVYTASTSLDGAAVKMWSTSNYN----MVGSLP- 876 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-------------~~~l~s~s~Dg~~I~iwd~~~~~----~~~~~~- 876 (949)
||++++..... ..+.+|...|++++|+|+ +.++++++.|+ +|++||++++. ....+.
T Consensus 128 wd~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 128 VEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp EEBCSSSCBCC----EEEECCSSCEEEEEECCCC------------CCEEEEEETTS-CEEEEEEETTTTEEEEEEEECC
T ss_pred EEecCCCceee----eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-cEEEEEEcCCCceEEEEEEecC
Confidence 99987643211 345689999999999986 46899999997 99999998765 556666
Q ss_pred CCCcEEEEEEcCC-----EEEEEECCCeEEEEECCCCc--EE-EEec-cccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 877 TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI--RI-ETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 877 ~~~~v~~l~~s~d-----~l~sgs~dg~I~vwd~~~~~--~~-~~l~-~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
|...|.+++|+|+ ++++|+.|++|++||++++. .. ..+. .+|.+.|.+++|+|+|++|++++.||+|++|+
T Consensus 203 H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 7889999999995 69999999999999998753 12 2221 36788999999999999999999999999998
Q ss_pred C
Q 002234 948 L 948 (949)
Q Consensus 948 l 948 (949)
.
T Consensus 283 ~ 283 (297)
T 2pm7_B 283 E 283 (297)
T ss_dssp E
T ss_pred E
Confidence 5
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-31 Score=305.49 Aligned_cols=299 Identities=14% Similarity=0.133 Sum_probs=244.6
Q ss_pred cccccccccEEEEecCCCCeEEEecCCce--eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRELV--HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~~~--~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
...+++++.++++++.|+.|++||..+.. .....| ..+....|+++ +|++|+.||+|++||+.++ .....+.+
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~ 137 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQA 137 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeeccc
Confidence 45677899999999999999999998432 333344 33444466765 9999999999999999998 77888889
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
|.+.|++++|+|++++|++|+.||+|++||+.+++. ......|...|.++. |+|+++.+++++.++.+++|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIA-------IIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEE-------EETTTTEEEEEETTSCEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEE-------EcCCCCEEEEEcCCCcEEEeE
Confidence 999999999999999999999999999999998752 223345788899988 999999999999999999998
Q ss_pred CC---------------CCceEEEE---------------------eC--CEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 789 SS---------------KYPKCLAL---------------------VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 789 ~~---------------~~v~~v~~---------------------~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
.. ..+.++.+ ++ ..+++|+.||.|++||++++......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---- 285 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL---- 285 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc----
Confidence 43 23444444 22 36999999999999999998876432
Q ss_pred cccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCCee-EEeec--CCCcEEEEEEcCC-EEEEEECCCeEEEEEC
Q 002234 831 KLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNM-VGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~~~-~~~~~--~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~ 905 (949)
..+|...|.+++|+|++. ++++++.|| .|++||+++++. +..+. +...+.++.+.++ ++++++.||.|++||+
T Consensus 286 -~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 286 -PSKFTCSCNSLTVDGNNANYIYAGYENG-MLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CCTTSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred -ccccCCCceeEEEeCCCCCEEEEEeCCC-eEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 345788999999999998 999999997 999999998753 55555 5678888877766 8999999999999998
Q ss_pred CCCc---------EEEEeccccccceeEEEEeCCCC---EEEEEeCCCcEEEEeCC
Q 002234 906 KRQI---------RIETLQTGTSGKVQCMALDDNEE---FLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 906 ~~~~---------~~~~l~~~h~~~I~~l~~spdg~---~L~sgs~Dg~I~iWdl~ 949 (949)
.... ....+ .+|.+.|.+++|+||++ .+++++.+|.+.+|+++
T Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cCCCCCccceeccCccEE-ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 7732 12223 46888999999999999 78888899999999974
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-31 Score=302.95 Aligned_cols=275 Identities=16% Similarity=0.179 Sum_probs=235.8
Q ss_pred eeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCc----eeeeEEecccCCCEEEEEEecC----C---CEEEEEe
Q 002234 661 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI----LHLIQQIREHTKAVTGLAILQS----G---EMLYSGS 729 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~----~~~i~~l~~H~~~V~~v~fspd----g---~~L~Sgs 729 (949)
...+.+|.+.|++++|+|++|++|+.||+|++||+.++. ...+..+.+|...|++++|+|+ | ++|++++
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 456789999999999999999999999999999999883 2378888899999999999999 9 9999999
Q ss_pred CCCcEEEEECCCCee----EEEEeecC-----CCceeeeeeccceEEEE----eCCCE-EEEEEecCeEEEecCC-----
Q 002234 730 LDKTARVWSIGNEEI----HCVQVHDI-----KDQIQNLAVSNSILCFI----PQGAG-IKVHLRNGKTKLLNSS----- 790 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~----~~~~~~~~-----~~~v~~l~~~~~~~~fs----p~g~~-l~~~~~~g~i~~~~~~----- 790 (949)
.||+|++||+.+++. .......+ ...|.++. |+ |+++. +++++.++.+++|+..
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK-------WGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE-------EECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEE-------EeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 999999999988752 02222334 47888887 99 99999 9999999999999633
Q ss_pred -------------------------CCceEEEEeCC-EEEEEECCCcEEEEECCCCceeeeecccccccC---C---CCC
Q 002234 791 -------------------------KYPKCLALVQG-KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG---K---ANP 838 (949)
Q Consensus 791 -------------------------~~v~~v~~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h---~~~ 838 (949)
..+.++.++++ .+++|+.||.|++||+++++... .+.. | ..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY------NFESQHSMINNSNS 235 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEE------EEECCC---CCCCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeE------EEeccccccccCCc
Confidence 23667888753 88999999999999999988773 4445 7 899
Q ss_pred EEEEEEeCCceEEEEEECC---CCEEEEEECCCCeeEEeec--------------CCCcEEEEEEcCC--EEEEEECCCe
Q 002234 839 VHALQVHNGLVYTASTSLD---GAAVKMWSTSNYNMVGSLP--------------TLSEVRAMVVSSE--LVYLGCKGGT 899 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~D---g~~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~s~d--~l~sgs~dg~ 899 (949)
|.+++|+|++.++++++.| | .|++||+++++.+..+. |...|.+++|+|+ ++++|+.||.
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEE-EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEECCCCCEEEEEecCCCCc-eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 9999999999999999988 7 99999999999888886 5788999999988 8999999999
Q ss_pred EEEEECCCCcEEEEecc-----cc---------------ccceeEEEEeCCC----------CEEEEEeCCCcEEEEeCC
Q 002234 900 VEIWDQKRQIRIETLQT-----GT---------------SGKVQCMALDDNE----------EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 900 I~vwd~~~~~~~~~l~~-----~h---------------~~~I~~l~~spdg----------~~L~sgs~Dg~I~iWdl~ 949 (949)
|++||+.+++.+..+.. +| ...|++++|+|+| ++|++++.||.|++||++
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 99999999999999841 56 8899999999998 799999999999999973
No 33
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-31 Score=301.00 Aligned_cols=277 Identities=14% Similarity=0.114 Sum_probs=228.8
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
.+....+.+++.++++++.|+.|++||..+ ....+.+|.+.|++++|+|+ +|++++.||+|++||+.+++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 344566778899999999999999999874 56778899999999999986 999999999999999998854455
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee---EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
..+.+|...|.+++|+|++++|++++.||.|++||++.+.. .......+...|.++. |+|+++.
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~------ 156 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD-------WHPNSVL------ 156 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE-------ECTTSSE------
T ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE-------EcCCCCE------
Confidence 56678999999999999999999999999999999988751 1122234566677666 6776653
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC------------------CCceeeeecccccccCCCCCEEEE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA------------------TGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~------------------~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
+++|+.||.|++||+. ++... ..+.+|...|.++
T Consensus 157 ----------------------l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 157 ----------------------LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM------FESSSSCGWVHGV 208 (372)
T ss_dssp ----------------------EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE------EECCCCSSCEEEE
T ss_pred ----------------------EEEEcCCCCEEEEEcccccccccccccccccccchhhhe------EecCCCCCeEEEE
Confidence 8889999999999964 44444 4556788999999
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCC--Cc---------
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR--QI--------- 909 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~--~~--------- 909 (949)
+|+|++.++++++.|| .|++||+++++++..+. +...+.+++|+|+ .+++++.||.|++||+.+ ++
T Consensus 209 ~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 287 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDS-TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDV 287 (372)
T ss_dssp EECSSSSEEEEEETTT-EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeCCC-EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCc
Confidence 9999999999999997 99999999999998888 6679999999988 444444999999999987 42
Q ss_pred -----------------------EE------EEeccccccceeEEEEe-CCC---CEEEEEeCCCcEEEEeC
Q 002234 910 -----------------------RI------ETLQTGTSGKVQCMALD-DNE---EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 910 -----------------------~~------~~l~~~h~~~I~~l~~s-pdg---~~L~sgs~Dg~I~iWdl 948 (949)
.. ..+..+|.+.|++++|+ ++| ++|++|+.||+|++||+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 288 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 11 33435899999999966 676 99999999999999996
No 34
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.5e-32 Score=313.30 Aligned_cols=276 Identities=15% Similarity=0.127 Sum_probs=224.2
Q ss_pred eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEE
Q 002234 662 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVW 737 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vW 737 (949)
....+|...|+|++|+|. +||+|+.||+|+|||+.++.......+.+|.+.|++++|+| ++++|+|||.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 345678999999999983 89999999999999999875556677789999999999998 78999999999999999
Q ss_pred ECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-----------CCCceEEEEeC---CE
Q 002234 738 SIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ---GK 802 (949)
Q Consensus 738 d~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~-----------~~~v~~v~~~~---~~ 802 (949)
|++++........ .....+.++. |+|+++.+++++.+|.+++|+. ...|.+++|++ ..
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLD-------VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEE-------EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred eccCCceeEEeccCCCCccEEEEE-------ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceE
Confidence 9998754433332 2334455655 9999999999999999999973 46799999985 35
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CC---
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL--- 878 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~--- 878 (949)
+++|+.|++|++||++++.....+ ....+|..+|++++|+|++.++++++.|| +|++||+.++.....+. |.
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~spdg~~l~s~~~D~-~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASF---LYSLPHRHPVNAACFSPDGARLLTTDQKS-EIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCC---SBCCBCSSCEEECCBCTTSSEEEEEESSS-CEEEEESSSSSSEEEECCCCCCC
T ss_pred EEEecCcceeeEEecccccccceE---EEeeeccccccceeECCCCCeeEEEcCCC-EEEEEECCCCccceEEecccccc
Confidence 889999999999999987654222 23467999999999999999999999997 99999999988766554 21
Q ss_pred ---CcEEEEEEcCC--EEEEEE------------CCCeEEEEECCCCcEEEEeccccccceeEE-EEeCCCCEEEEEeCC
Q 002234 879 ---SEVRAMVVSSE--LVYLGC------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSD 940 (949)
Q Consensus 879 ---~~v~~l~~s~d--~l~sgs------------~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l-~~spdg~~L~sgs~D 940 (949)
..+....|+|+ .+++++ .++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d 420 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-G 420 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-S
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C
Confidence 12334456655 444443 346899999999999999877888899988 6999999999876 8
Q ss_pred CcEEEEeCC
Q 002234 941 GRIQAWGLS 949 (949)
Q Consensus 941 g~I~iWdl~ 949 (949)
++|+|||+.
T Consensus 421 ~~i~iW~~~ 429 (435)
T 4e54_B 421 YHILIWSQQ 429 (435)
T ss_dssp SEEEECCCC
T ss_pred CcEEEEECC
Confidence 899999974
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-30 Score=314.71 Aligned_cols=306 Identities=14% Similarity=0.168 Sum_probs=249.6
Q ss_pred hccccccccccEEEEecCC----CCeEEEecCCceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeee
Q 002234 631 RKYSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~d----g~I~vWd~~~~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
+....+++++.++++++.+ +.|.+||.......+.+|.+.|++++|+|+ .+++++.||+|++||..++ +.+
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~ 196 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFS 196 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--cee
Confidence 3456677899999999988 799999987888889999999999999996 7999999999999999998 788
Q ss_pred EEecccCC---CEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEee---cCCCceeeeeeccceEEEEeCCCEEE
Q 002234 704 QQIREHTK---AVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVH---DIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 704 ~~l~~H~~---~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
..+.+|.. .|++++|+|+ +++|++++.||.|++||+.+++....... .+...|.++. |+ +++.++
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~-~~~~l~ 268 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS-------WL-DSQKFA 268 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE-------ES-SSSEEE
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE-------Ec-CCCEEE
Confidence 99999999 9999999999 99999999999999999999863332213 6778888887 77 777788
Q ss_pred EEEecCeEEEecCCC----------------CceEEEE-eCCEEEEEECCCcEEEEECCCCceeeee-------------
Q 002234 777 VHLRNGKTKLLNSSK----------------YPKCLAL-VQGKVYCGCQDGAIQEIDLATGTFATIQ------------- 826 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~----------------~v~~v~~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~------------- 826 (949)
+++.++.+++|+... .+.++.+ .++.+++|+.||.|++||+.+++....+
T Consensus 269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 348 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348 (615)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETT
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEec
Confidence 887778887777431 2223333 2334555555555555554422111000
Q ss_pred --------------------------------------------------------------------------------
Q 002234 827 -------------------------------------------------------------------------------- 826 (949)
Q Consensus 827 -------------------------------------------------------------------------------- 826 (949)
T Consensus 349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence
Q ss_pred -------------------------------------cc-----------c--ccccCCCCCEEEEEEeCCceEEEEEEC
Q 002234 827 -------------------------------------TG-----------H--RKLLGKANPVHALQVHNGLVYTASTSL 856 (949)
Q Consensus 827 -------------------------------------~~-----------~--~~~~~h~~~V~~l~~~~~~~~l~s~s~ 856 (949)
.+ . ..+.+|...|++++|+|++.++++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 00 0 234568899999999999999999999
Q ss_pred CCCEEEEEECCCCeeEEeec--CCCcEEEEEEcC----------C--EEEEEECCCeEEEEECCCC-cEEEEeccccccc
Q 002234 857 DGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSS----------E--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGK 921 (949)
Q Consensus 857 Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~----------d--~l~sgs~dg~I~vwd~~~~-~~~~~l~~~h~~~ 921 (949)
|| .|++||+.+++.+..+. |...|++++|+| + ++++|+.||.|++||+.++ +.+..+ .+|.+.
T Consensus 509 dg-~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~~ 586 (615)
T 1pgu_A 509 MG-KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDG 586 (615)
T ss_dssp TS-CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTC
T ss_pred CC-eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-hcCccc
Confidence 97 99999999999999887 788999999999 7 8999999999999999998 677777 589999
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 922 VQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 922 I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|++++|+||++ |++++.||+|++|+++
T Consensus 587 v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 587 VNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred eEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 99999999999 9999999999999974
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.8e-31 Score=292.88 Aligned_cols=264 Identities=14% Similarity=0.166 Sum_probs=226.8
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc--e
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--L 700 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~--~ 700 (949)
|...+....+++++.++++++.||+|++||.. .....+..|.+.|.+++|+|+ ++++|+.||+|++||+.++. .
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 33445556677899999999999999999987 456677889999999999996 99999999999999998752 2
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
.....+.+|.+.|.++.|++++. +++++.||+|++||+.+++. ......|...|.++. |+|+++.+++++.
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~l~sg~~ 204 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLS-------LAPDTRLFVSGAC 204 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSSEEEEEET
T ss_pred eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEE-------ECCCCCEEEEEeC
Confidence 46677889999999999998875 89999999999999999852 233445788898888 9999999999999
Q ss_pred cCeEEEecC------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC
Q 002234 781 NGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 846 (949)
Q Consensus 781 ~g~i~~~~~------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 846 (949)
|+.+++|+. ...|.+++|++ ..+++|+.||+|++||+++++....+. ...+...|.+++|+|
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS----HDNIICGITSVSFSK 280 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----CTTCCSCEEEEEECT
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc----cCCcccceEEEEECC
Confidence 999999983 45688999986 579999999999999999987764432 223446899999999
Q ss_pred CceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEE
Q 002234 847 GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 904 (949)
Q Consensus 847 ~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd 904 (949)
++.++++++.|+ .|++||+.+++.+..+. |...|.+++|+|+ ++++|+.||+|+|||
T Consensus 281 ~g~~l~~g~~d~-~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 281 SGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEECCCC-eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999997 99999999999988887 7889999999998 799999999999997
No 37
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.3e-31 Score=301.19 Aligned_cols=265 Identities=15% Similarity=0.271 Sum_probs=220.7
Q ss_pred ccEEEEecCCCCeEEEecCC--ceee--ecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCE
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 713 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~--~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V 713 (949)
.+.|++| .|++|+|||..+ .... ..+|.+.|++|+|+|+ +|++|+.||+|++||+.++ +++..+.+|...|
T Consensus 116 ~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~~v 192 (420)
T 4gga_A 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARV 192 (420)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCce
Confidence 3466655 599999999884 3343 3468889999999997 9999999999999999999 8999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCc
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 793 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v 793 (949)
.++.+ ++..|++|+.|+++++||.............|...+..+. ++|+|+.
T Consensus 193 ~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~-------~~~~g~~------------------- 244 (420)
T 4gga_A 193 GSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGRH------------------- 244 (420)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSSE-------------------
T ss_pred EEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee-------ecCCCCe-------------------
Confidence 98877 4689999999999999999886544444455666777666 7777764
Q ss_pred eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEE--EECCCCEEEEEECCCCe
Q 002234 794 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTAS--TSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 794 ~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s--~s~Dg~~I~iwd~~~~~ 870 (949)
+++++.||.+++||..+++..... ......|...|.+++|+|++ .++++ ++.|+ +|++||+.++.
T Consensus 245 ---------l~s~~~D~~v~i~~~~~~~~~~~~--~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~-~I~iwd~~t~~ 312 (420)
T 4gga_A 245 ---------LASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR-HIRIWNVCSGA 312 (420)
T ss_dssp ---------EEEEETTSCEEEEESSCCSSCSCC--SEEECCCSSCEEEEEECTTCTTEEEEEECTTTC-EEEEEETTTTE
T ss_pred ---------eeeeeccccceEEeecccccccee--eeeecccCCceeeeeeCCCcccEEEEEeecCCC-EEEEEeCCccc
Confidence 889999999999999887643211 13456788999999999754 34443 34564 99999999999
Q ss_pred eEEeecCCCcEEEEEEcCC--EEEEEE--CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEE
Q 002234 871 MVGSLPTLSEVRAMVVSSE--LVYLGC--KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 871 ~~~~~~~~~~v~~l~~s~d--~l~sgs--~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iW 946 (949)
+...+.++..+.++.|+++ .+++++ .||.|+|||+.+++++.++ .+|.+.|++++|+|||++|+||+.||+|+||
T Consensus 313 ~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 9999998899999999988 565554 7899999999999999999 5999999999999999999999999999999
Q ss_pred eC
Q 002234 947 GL 948 (949)
Q Consensus 947 dl 948 (949)
|+
T Consensus 392 dv 393 (420)
T 4gga_A 392 RC 393 (420)
T ss_dssp CC
T ss_pred EC
Confidence 97
No 38
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.3e-31 Score=295.22 Aligned_cols=276 Identities=10% Similarity=0.103 Sum_probs=218.1
Q ss_pred ccccccccccEEEEecCCC-------CeEEEecCCc------------eeeecCCCCceEEEEEeCCEEEEEe-------
Q 002234 632 KYSPLAFEMVKVLSNGHDS-------SADFWNHREL------------VHVDSSENGKVLSIACFRDKIFSGH------- 685 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg-------~I~vWd~~~~------------~~~~~~h~~~V~~l~~s~d~lasgs------- 685 (949)
....|.+|+..|++||.|. .|++|+.... ...+.+|...|.+++++++.+++|+
T Consensus 18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l 97 (365)
T 4h5i_A 18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKI 97 (365)
T ss_dssp EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHH
T ss_pred EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEE
Confidence 3566778999999987644 4999997621 1246688999999999998777764
Q ss_pred ----CCCcEEEEecCCCc--eeeeEEe-----cccCCCEEEEEEecCCCEEEEE--eCCCcEEEEECCCCeeEEEEeecC
Q 002234 686 ----SDGTIKVWTGRGSI--LHLIQQI-----REHTKAVTGLAILQSGEMLYSG--SLDKTARVWSIGNEEIHCVQVHDI 752 (949)
Q Consensus 686 ----~Dg~I~vWd~~t~~--~~~i~~l-----~~H~~~V~~v~fspdg~~L~Sg--s~Dg~I~vWd~~~~~~~~~~~~~~ 752 (949)
.|+++++|++.+.. ....... ..+...+.+++|+|||++++++ +.|++|++||+.+++ ......+
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--~~~~~~~ 175 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--EKFEIET 175 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--EEEEEEC
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--EEEEeCC
Confidence 57889999987652 1122221 2345679999999999998654 478999999999985 3333456
Q ss_pred CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccc
Q 002234 753 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 832 (949)
Q Consensus 753 ~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 832 (949)
...|.++. |+|||+. +++++ ++.+.+|+..++..... ...
T Consensus 176 ~~~V~~v~-------fspdg~~----------------------------l~s~s-~~~~~~~~~~~~~~~~~----~~~ 215 (365)
T 4h5i_A 176 RGEVKDLH-------FSTDGKV----------------------------VAYIT-GSSLEVISTVTGSCIAR----KTD 215 (365)
T ss_dssp SSCCCEEE-------ECTTSSE----------------------------EEEEC-SSCEEEEETTTCCEEEE----ECC
T ss_pred CCceEEEE-------EccCCce----------------------------EEecc-ceeEEEEEeccCcceee----eec
Confidence 77888887 9999885 55555 55677788777776532 234
Q ss_pred cCCCCCEEEEEEeCCceEEEEEECCCC---EEEEEECCCCeeE----Eeec-CCCcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 833 LGKANPVHALQVHNGLVYTASTSLDGA---AVKMWSTSNYNMV----GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 833 ~~h~~~V~~l~~~~~~~~l~s~s~Dg~---~I~iwd~~~~~~~----~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
.+|...|.+++|+|++.++++++.|++ .+++||+..+... ..+. |...|++++|+|| ++++|+.|++|+|
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 568889999999999999999988764 6889998776532 2333 6788999999999 8999999999999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
||+.+++++.++..+|.+.|++++|||||++|+||+.|++|+|||+.
T Consensus 296 wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999999999877999999999999999999999999999999983
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-31 Score=299.25 Aligned_cols=269 Identities=16% Similarity=0.237 Sum_probs=227.6
Q ss_pred ccccccccEEEEecCCCCeEEEecCC--ceeeec-CCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
..+.+++..+++++.|+.|++||..+ ...... .|.+.|++++|+|+ +|++|+.||.|++||+.++ +.+..+.+
T Consensus 97 ~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~ 174 (401)
T 4aez_A 97 NLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAG 174 (401)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECC
T ss_pred EEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecC
Confidence 44566678899999999999999974 333333 48999999999996 9999999999999999998 78899999
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
|...|.+++| +++++++|+.||+|++||++...........|...|.++. |+|+++.
T Consensus 175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~-------------- 231 (401)
T 4aez_A 175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA-------WRSDGLQ-------------- 231 (401)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSSE--------------
T ss_pred CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE-------EcCCCCE--------------
Confidence 9999999999 4679999999999999999865434444555677777777 7777764
Q ss_pred CCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEE--CCCCEEEEEE
Q 002234 789 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTS--LDGAAVKMWS 865 (949)
Q Consensus 789 ~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s--~Dg~~I~iwd 865 (949)
+++|+.||.|++||+.++... ..+.+|...|.+++|+|++ .++++++ .|+ .|++||
T Consensus 232 --------------l~s~~~d~~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d 290 (401)
T 4aez_A 232 --------------LASGGNDNVVQIWDARSSIPK------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWN 290 (401)
T ss_dssp --------------EEEEETTSCEEEEETTCSSEE------EEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEE
T ss_pred --------------EEEEeCCCeEEEccCCCCCcc------EEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEE
Confidence 889999999999999998876 4556788999999999965 4555554 565 999999
Q ss_pred CCCCeeEEeecCCCcEEEEEEcCC--EEEE--EECCCeEEEEECCCCcEEEE--eccccccceeEEEEeCCCCEEEEEeC
Q 002234 866 TSNYNMVGSLPTLSEVRAMVVSSE--LVYL--GCKGGTVEIWDQKRQIRIET--LQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 866 ~~~~~~~~~~~~~~~v~~l~~s~d--~l~s--gs~dg~I~vwd~~~~~~~~~--l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
+.+++.+..+.+...+.+++|+|+ .+++ |+.||.|++||+.+++.... + .+|.+.|.+++|+|||++|++++.
T Consensus 291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEECTTSSEEEEECT
T ss_pred CCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEECCCCCEEEEEeC
Confidence 999999999999999999999998 6777 44899999999998765444 4 479999999999999999999999
Q ss_pred CCcEEEEeCC
Q 002234 940 DGRIQAWGLS 949 (949)
Q Consensus 940 Dg~I~iWdl~ 949 (949)
||.|++||+.
T Consensus 370 dg~i~iw~~~ 379 (401)
T 4aez_A 370 DENLKFWRVY 379 (401)
T ss_dssp TSEEEEEECC
T ss_pred CCcEEEEECC
Confidence 9999999974
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-30 Score=281.78 Aligned_cols=268 Identities=15% Similarity=0.168 Sum_probs=230.3
Q ss_pred CceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
+....+.+|.+.|++++|..+ +|++|+.||+|++||+.++ .....+..|...|.+++|+|+++++++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 356678899999999999333 9999999999999999988 7888889999999999999999999999999999999
Q ss_pred ECCCCe--eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec----------CCCCceEEEEe---CCE
Q 002234 738 SIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN----------SSKYPKCLALV---QGK 802 (949)
Q Consensus 738 d~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~----------~~~~v~~v~~~---~~~ 802 (949)
++.... ........+...+.++. | +++.+++++.++.+++|+ +...+.++.+. ++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~-------~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLS-------F--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEE-------E--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EeeecCCCCcccchhhcccCEEEEE-------e--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCE
Confidence 987653 12233345677787766 5 688999999999999997 34567788775 467
Q ss_pred EEEEECCCcEEEEECCCCceeeeecccccccC-CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCc
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 880 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 880 (949)
+++++.||.|++||. +... ..+.. |...+.+++|+|++. +++++.|| .|++||+++++.+..+. |...
T Consensus 158 l~~~~~d~~i~i~d~--~~~~------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 158 FLTASADKTIKLWQN--DKVI------KTFSGIHNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp EEEEETTSCEEEEET--TEEE------EEECSSCSSCEEEEEEEETTE-EEEEETTS-EEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEECCCCEEEEec--CceE------EEEeccCcccEEEEEEcCCCe-EEEccCCC-eEEEEECCchhhhhhhhcCCce
Confidence 999999999999993 3333 23334 788999999999998 78888886 99999999999999888 7889
Q ss_pred EEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 881 VRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 881 v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.+++|+|+ .+++++.||.|++||+.+++.+..+. .|...|++++|+|+++ +++++.||.|++||+.
T Consensus 228 i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred EEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 999999999 89999999999999999999999994 7888999999999998 6679999999999974
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.9e-31 Score=298.71 Aligned_cols=273 Identities=11% Similarity=0.162 Sum_probs=217.4
Q ss_pred hccccccccc-cEEEEecCCCCeEEEecCC--ceeee--cCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCCCceee
Q 002234 631 RKYSPLAFEM-VKVLSNGHDSSADFWNHRE--LVHVD--SSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 631 ~~~~~~~~~~-~~l~s~s~dg~I~vWd~~~--~~~~~--~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
+....+.+++ .++++|+.||.|++||..+ ..... .+|.+.|.+++|+| + +|++++.||+|++||+.+.....
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQV 155 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEE
Confidence 3445566777 8999999999999999983 33333 37999999999999 3 99999999999999999763333
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
.....+|...|.+++|+|++++|++|+.||+|++||++.. .......|...|.++. |+|+++.
T Consensus 156 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~h~~~v~~~~-------~~~~~~~-------- 218 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH--EIFKEKLHKAKVTHAE-------FNPRCDW-------- 218 (383)
T ss_dssp EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--EEEEEECSSSCEEEEE-------ECSSCTT--------
T ss_pred EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--EEEEeccCCCcEEEEE-------ECCCCCC--------
Confidence 3333445588999999999999999999999999999644 3333345677777777 7777762
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC----CceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECC
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT----GTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLD 857 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~----~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D 857 (949)
.+++|+.|+.|++||+++ +.... . .+|...|.+++|+| ++.++++++.|
T Consensus 219 -------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~------~-~~~~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 219 -------------------LMATSSVDATVKLWDLRNIKDKNSYIA------E-MPHEKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp -------------------EEEEEETTSEEEEEEGGGCCSTTCEEE------E-EECSSCEEEEEECTTTSCEEEEEESS
T ss_pred -------------------EEEEEeCCCEEEEEeCCCCCcccceEE------E-ecCCCceEEEEEcCCCCCEEEEEcCC
Confidence 388999999999999998 44432 2 25889999999999 99999999999
Q ss_pred CCEEEEEECCCCeeEEeec-C-----------------CCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccc-
Q 002234 858 GAAVKMWSTSNYNMVGSLP-T-----------------LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTG- 917 (949)
Q Consensus 858 g~~I~iwd~~~~~~~~~~~-~-----------------~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~- 917 (949)
+ .|++||+++++....+. + ...+..++++|+ .+ +|+.||.|++||+.+++.+..+...
T Consensus 273 ~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 273 N-EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp S-EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred C-cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC
Confidence 7 99999999877655543 1 133445666666 23 7778999999999999999999532
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 918 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 918 h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|.+.+..++|+||+++|++|+ ||.|++||++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 566788889999999999997 9999999984
No 42
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-32 Score=317.52 Aligned_cols=296 Identities=10% Similarity=0.076 Sum_probs=216.3
Q ss_pred cccccEEEEecCCCCeEEEecCCc------eeeecCCCCceEEEEEeCC--------EEEEEeCCCcEEEEecCCCce--
Q 002234 637 AFEMVKVLSNGHDSSADFWNHREL------VHVDSSENGKVLSIACFRD--------KIFSGHSDGTIKVWTGRGSIL-- 700 (949)
Q Consensus 637 ~~~~~~l~s~s~dg~I~vWd~~~~------~~~~~~h~~~V~~l~~s~d--------~lasgs~Dg~I~vWd~~t~~~-- 700 (949)
.+++..+++++.|++|+||+.... ...+.+|.+.|.+++|+|+ +||+|+.||+|++||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 466778899999999999998632 1345678899999999984 899999999999999987621
Q ss_pred -------eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCC-
Q 002234 701 -------HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG- 772 (949)
Q Consensus 701 -------~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g- 772 (949)
.+..++.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.++. ..|+|+|
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~-----~~~s~~g~ 323 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS-----TAYSDFED 323 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE-----EECCTTSC
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE-----EEcCCCCC
Confidence 123478899999999999986 48999999999999999976422233456788898883 1277888
Q ss_pred CEEEEEEecCeEEEecCC--------------CCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCC
Q 002234 773 AGIKVHLRNGKTKLLNSS--------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 836 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~~~--------------~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 836 (949)
..+++++.|+++++|+.. ..+.+++|++ ..+++++.|++|++||++++.+. ..+.+|.
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~------~~l~gH~ 397 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV------HPLVSRE 397 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC------EEEEECS
T ss_pred eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc------eeeecCC
Confidence 899999999999999842 2477899997 36899999999999999998876 4456799
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec------CCCcEEEEEEcCC-EEEEEECCCeEEEEECC-CC
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK-RQ 908 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~-~~ 908 (949)
.+|++++|+|++.++++++.|+ +|++||+... ...... +...+++++|+|+ .++.... .+.+|+.. ++
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dg-tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g 473 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADG-SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLTVND 473 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTT-EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC-----
T ss_pred CceEEEEeCCCCCeEEEEECCC-EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccC--CceecccccCC
Confidence 9999999999999999999997 9999998653 222211 1124778999998 3333322 23344433 46
Q ss_pred cEEEEeccccccceeEEEEeCCCC---EEEEEeCCCcEEEEeCC
Q 002234 909 IRIETLQTGTSGKVQCMALDDNEE---FLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 909 ~~~~~l~~~h~~~I~~l~~spdg~---~L~sgs~Dg~I~iWdl~ 949 (949)
..+.++ .+|.+.|++++|+|+++ .+++|+.||+|+||++.
T Consensus 474 ~~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 474 VSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cceeee-cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 677777 58999999999999964 99999999999999974
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-30 Score=291.18 Aligned_cols=250 Identities=19% Similarity=0.227 Sum_probs=208.2
Q ss_pred ceeeecCCCC-ceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEE-ecccCCCEEEEEEecCCCEEEEEeCCCcEE
Q 002234 660 LVHVDSSENG-KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTAR 735 (949)
Q Consensus 660 ~~~~~~~h~~-~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~-l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~ 735 (949)
.+..+.+|.+ .|++++|+|+ +|++|+.||+|+|||+.++...+... ..+|.+.|.+++|+|+|++|++|+.|++|+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 4566778987 9999999997 99999999999999999874323333 368999999999999999999999999999
Q ss_pred EEECCCCeeEEEE-eecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 736 VWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 736 vWd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
+||+.++...+.. ...|...|.++. |+|+|+. |++|+.|++|++
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~-------~sp~~~~----------------------------l~s~s~D~~v~i 131 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVA-------WAPSGNL----------------------------LATCSRDKSVWV 131 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEE-------ECTTSSE----------------------------EEEEETTSCEEE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEE-------EeCCCCE----------------------------EEEEECCCeEEE
Confidence 9999887644333 345677888877 8888764 889999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEeec-CCCcEEEEEEcCC--
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP-TLSEVRAMVVSSE-- 889 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~~-~~~~v~~l~~s~d-- 889 (949)
||+.++...... ..+.+|...|.+++|+|++.++++++.|+ +|++||..++. +..++. |...|++++|+|+
T Consensus 132 wd~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 132 WEVDEEDEYECV---SVLNSHTQDVKHVVWHPSQELLASASYDD-TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp EEECTTSCEEEE---EEECCCCSCEEEEEECSSSSCEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS
T ss_pred EECCCCCCeEEE---EEecCcCCCeEEEEECCCCCEEEEEeCCC-cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC
Confidence 999877543211 35678999999999999999999999997 99999998875 345565 7889999999998
Q ss_pred EEEEEECCCeEEEEECCC---------------CcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 LVYLGCKGGTVEIWDQKR---------------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 ~l~sgs~dg~I~vwd~~~---------------~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++++|+.||+|++||... .+++.++...|...|++++|+|++..|++++.|+.|++|++
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 899999999999999632 13455665458889999999999999999999999999985
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-30 Score=341.97 Aligned_cols=301 Identities=15% Similarity=0.214 Sum_probs=257.5
Q ss_pred hccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
+....+++++.++++|+.||+|++||..+ ....+.+|.+.|++++|+|+ ++++|+.||+|++||+.++ +++..+
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~ 695 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTY 695 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEEEE
Confidence 34556778999999999999999999974 56778899999999999997 9999999999999999999 789999
Q ss_pred cccCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 707 REHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 707 ~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.+|...|++++|+| ++.++++|+.||+|++||+.+++ .......|...|.++. |+|+|+.+++++.+|.+
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~-------~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCR-------FSPDDELLASCSADGTL 767 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEE-------ECSSTTEEEEEESSSEE
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEE-------EecCCCEEEEEECCCeE
Confidence 99999999999999 56689999999999999999986 2333446788888887 99999999999999999
Q ss_pred EEecC-------------------------------------------------------------------CCCceEEE
Q 002234 785 KLLNS-------------------------------------------------------------------SKYPKCLA 797 (949)
Q Consensus 785 ~~~~~-------------------------------------------------------------------~~~v~~v~ 797 (949)
++|+. ...+.++.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 99863 12355666
Q ss_pred EeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee----
Q 002234 798 LVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM---- 871 (949)
Q Consensus 798 ~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~---- 871 (949)
+++ ..+++|+.||.|++||+.++... ..+.+|...|++++|+|++.++++++.|| +|++||+.+...
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~s~s~dg-~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVHGVMFSPDGSSFLTASDDQ-TIRVWETKKVCKNSAI 920 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEEHHHHHSCCSS
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCcee------eecCCCccceEEEEECCCCCEEEEEeCCC-eEEEEEccccceeeee
Confidence 664 46888899999999999988776 45678999999999999999999999997 999999653110
Q ss_pred -------------------------E---------EeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec
Q 002234 872 -------------------------V---------GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 872 -------------------------~---------~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
. ........+.+++|+|+ ++++|+.+|.|++||+.+++....+
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~- 999 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG- 999 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC-
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec-
Confidence 0 00113467899999998 8999999999999999999998888
Q ss_pred cccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+|.+.|++++|+|||++|++++.||+|++||+.
T Consensus 1000 ~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 5899999999999999999999999999999973
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=7.4e-31 Score=292.85 Aligned_cols=230 Identities=18% Similarity=0.156 Sum_probs=188.4
Q ss_pred ccccccEEEEecCCCCeEEEecCC--c----eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE--L----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~--~----~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
+.++ .++++|+.||+|++||+.+ . .....+|.+.|++++|+|+ +|++|+.||+|++||+.++ +++.++.
T Consensus 90 ~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--~~~~~~~ 166 (344)
T 4gqb_B 90 WVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSSYR 166 (344)
T ss_dssp EETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEEC
T ss_pred EeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEEEc
Confidence 3444 5788999999999999873 2 2235589999999999997 9999999999999999999 8999999
Q ss_pred ccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 708 EHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 708 ~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
+|.+.|++++|+|++ .+|++|+.||+|++||+++++.. .+....+...+.++. |+|++..
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~~~----------- 228 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-------WHPQQSE----------- 228 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE-------ECSSCTT-----------
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee-------ecCCCCc-----------
Confidence 999999999999987 57899999999999999987522 222223333455544 5554432
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEECCCCEEEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMW 864 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~I~iw 864 (949)
.+++|+.||+|++||+++++.+ ..+.+|...|++++|+|++ .++++++.|+ +|++|
T Consensus 229 ----------------~l~sg~~dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-~i~vw 285 (344)
T 4gqb_B 229 ----------------VFVFGDENGTVSLVDTKSTSCV------LSSAVHSQCVTGLVFSPHSVPFLASLSEDC-SLAVL 285 (344)
T ss_dssp ----------------EEEEEETTSEEEEEESCC--CC------EEEECCSSCEEEEEECSSSSCCEEEEETTS-CEEEE
T ss_pred ----------------ceEEeccCCcEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCeEEEEEeCCC-eEEEE
Confidence 4788999999999999999887 5667899999999999987 5789999996 99999
Q ss_pred ECCCCeeEEeecCCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCc
Q 002234 865 STSNYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 865 d~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~ 909 (949)
|+.++++.....|...|++++|+|+ .+++|+.||+|++|++.+..
T Consensus 286 d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 286 DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999988876668999999999987 57799999999999998754
No 46
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.3e-30 Score=300.84 Aligned_cols=263 Identities=21% Similarity=0.346 Sum_probs=226.8
Q ss_pred ccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
..+++++.++++|+.||+|++||.. +....+.+|.+.|++++|.++++++|+.||+|++||+.++ +.+..+.+|..
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~ 214 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCE 214 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC--CEEEEECCCCS
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCC
Confidence 4566789999999999999999987 4567788999999999998889999999999999999999 78999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC--VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
.|.+++|+ ++.+++|+.||+|++||+.++.... ..... +
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------------------------------------~ 255 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-------------------------------------H 255 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC-------------------------------------C
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC-------------------------------------C
Confidence 99999996 4699999999999999998864211 11112 3
Q ss_pred CCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC
Q 002234 790 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
...|.++.+.++.+++|+.||.|++||+.+++.. ..+.+|...|.++.++ +.++++++.|| .|++||++++
T Consensus 256 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~--~~~l~~g~~dg-~i~iwd~~~~ 326 (435)
T 1p22_A 256 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV------RTLNGHKRGIACLQYR--DRLVVSGSSDN-TIRLWDIECG 326 (435)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEEE--TTEEEEEETTS-CEEEEETTTC
T ss_pred CCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE------EEEcCCCCcEEEEEeC--CCEEEEEeCCC-eEEEEECCCC
Confidence 3445556666667999999999999999999887 4566788999999995 56888999887 9999999999
Q ss_pred eeEEeec-CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCc---------EEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 870 NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 870 ~~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~---------~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
+++..+. |...|.+++|+++++++|+.||.|++||+.++. .+..+ .+|.+.|.+++| ++++|++|+.
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCS
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeC
Confidence 9999988 788999999988899999999999999997766 78888 589999999999 7889999999
Q ss_pred CCcEEEEeCC
Q 002234 940 DGRIQAWGLS 949 (949)
Q Consensus 940 Dg~I~iWdl~ 949 (949)
||+|++||+.
T Consensus 404 Dg~i~iwd~~ 413 (435)
T 1p22_A 404 DDTILIWDFL 413 (435)
T ss_dssp SSEEEEEC--
T ss_pred CCEEEEEECC
Confidence 9999999973
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=2.2e-30 Score=286.09 Aligned_cols=268 Identities=17% Similarity=0.192 Sum_probs=219.2
Q ss_pred hHhhhcccccccc-ccEEEEecCCCCeEEEecCC-------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC
Q 002234 627 LRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 627 ~~~~~~~~~~~~~-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~ 696 (949)
|...+....+.++ +.+|++|+.|++|++|+... ....+.+|...|.+++|+|+ +|++|+.||+|++||+.
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3333444455554 47999999999999999752 35678899999999999997 99999999999999999
Q ss_pred CCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 697 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
++ +++..+.+|...|.+++|+|++++|++|+.||+|++||++.. .......|...+.++.+.+.. ...+++..++
T Consensus 96 ~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~l~ 170 (319)
T 3frx_A 96 TG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNE-KADDDSVTII 170 (319)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC-------CCEEE
T ss_pred CC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCC-CCCCCccEEE
Confidence 99 789999999999999999999999999999999999999875 333445677888888732211 0122566899
Q ss_pred EEEecCeEEEec------------CCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 777 VHLRNGKTKLLN------------SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 777 ~~~~~g~i~~~~------------~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
+++.|+.+++|+ |...|.++++++ ..+++|+.||.|++||+.+++.+..+. +..+|.++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~ 243 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-------AQDEVFSL 243 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-------CCSCEEEE
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------CCCcEEEE
Confidence 999999999997 346789999986 469999999999999999998774432 23689999
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---------CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---------~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~ 908 (949)
+|+|++.++++++.+ .+++|++..+..+..+. +...+.+++|+|| ++++|+.||+|+|||+.++
T Consensus 244 ~~sp~~~~la~~~~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 244 AFSPNRYWLAAATAT--GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECSSSSEEEEEETT--EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCCEEEEEcCC--CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999988754 69999999887776654 2457899999999 8999999999999998764
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.8e-31 Score=294.45 Aligned_cols=247 Identities=19% Similarity=0.248 Sum_probs=197.7
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcEEEE
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVW 737 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vW 737 (949)
..+.+|.+.|++++|+|+ +|++|+.|++|++||+.++...++..+.+|.+.|++++|+| ++++|+||+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 356789999999999986 99999999999999999874456788999999999999986 48999999999999999
Q ss_pred ECCCCeeEE-EEeecCCCceeeeeeccceEEEEeC--CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 738 SIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 738 d~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~fsp~--g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
|++++.... .....|...|.++. |+|+ |. .+++|+.||+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~-------~~p~~~g~----------------------------~lasgs~D~~i~l 131 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVC-------WAPHDYGL----------------------------ILACGSSDGAISL 131 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEE-------ECCTTTCS----------------------------CEEEECSSSCEEE
T ss_pred ECCCCcceEEEEccCCCCceEEEE-------ECCCCCCc----------------------------EEEEEcCCCCEEE
Confidence 999874222 23335667777776 7776 33 3889999999999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCC-----------------ceEEEEEECCCCEEEEEECCCC---eeEEe
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG-----------------LVYTASTSLDGAAVKMWSTSNY---NMVGS 874 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----------------~~~l~s~s~Dg~~I~iwd~~~~---~~~~~ 874 (949)
||+.++..... ...+.+|...|.+++|+|+ +.++++++.|+ +|++||++.. ++...
T Consensus 132 wd~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 132 LTYTGEGQWEV---KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN-LIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp EEECSSSCEEE---CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS-BCCEEEECTTSCEEEEEC
T ss_pred EecCCCCCcce---eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC-eEEEEEeCCCCccceeee
Confidence 99987642211 1355788999999999987 36899999986 9999999755 45666
Q ss_pred ec-CCCcEEEEEEcCC------EEEEEECCCeEEEEECCCC---c-EEEEeccccccceeEEEEeCCCCEEEEEeCCCcE
Q 002234 875 LP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ---I-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 943 (949)
Q Consensus 875 ~~-~~~~v~~l~~s~d------~l~sgs~dg~I~vwd~~~~---~-~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 943 (949)
+. |...|.+++|+|+ ++++|+.||+|++||+.+. . ....+ .+|.+.|++++|+|+|++|++++.||+|
T Consensus 208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 66 7789999999985 5999999999999998763 1 12233 4688899999999999999999999999
Q ss_pred EEEeC
Q 002234 944 QAWGL 948 (949)
Q Consensus 944 ~iWdl 948 (949)
++|+.
T Consensus 287 ~lw~~ 291 (316)
T 3bg1_A 287 TLWKE 291 (316)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-30 Score=325.96 Aligned_cols=306 Identities=11% Similarity=0.076 Sum_probs=234.1
Q ss_pred hccccccccccEEEEecCCCCeEEEecCCce-------------eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEe
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHRELV-------------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWT 694 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~-------------~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd 694 (949)
+....+.+++.++++|+.||+|++||..+.. ....+|.+.|++++|+|+ .+++|+.||+| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 3456677899999999999999999997432 234679999999999994 89999999999 999
Q ss_pred cCCCceeeeEEeccc------------------CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee------
Q 002234 695 GRGSILHLIQQIREH------------------TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH------ 750 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H------------------~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~------ 750 (949)
+.++ +++..+..| ...|++++|+|+|++|++|+.||+|++||+++++.......
T Consensus 180 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 180 LVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp TTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred CCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 9998 677777665 57899999999999999999999999999999863322111
Q ss_pred -----------cCCCceeeeeeccceEEEEe----CC-CEEEEEEec-----CeEEEec---------------------
Q 002234 751 -----------DIKDQIQNLAVSNSILCFIP----QG-AGIKVHLRN-----GKTKLLN--------------------- 788 (949)
Q Consensus 751 -----------~~~~~v~~l~~~~~~~~fsp----~g-~~l~~~~~~-----g~i~~~~--------------------- 788 (949)
.+..+|.++. |++ ++ ..+++++.+ ..+.+|+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~-------w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~ 330 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVY-------WMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYAN 330 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEE-------EEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHS
T ss_pred CCCCcCCCCCccccCCeeEEE-------EEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcC
Confidence 1234677776 654 33 345555454 2455554
Q ss_pred ----------CCCCceEEEEeC------------CEEEEEECCCcEEEEECCCCceeee-eccc----------------
Q 002234 789 ----------SSKYPKCLALVQ------------GKVYCGCQDGAIQEIDLATGTFATI-QTGH---------------- 829 (949)
Q Consensus 789 ----------~~~~v~~v~~~~------------~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~---------------- 829 (949)
+...+..+.+.+ ..+++++.||.|++||+.++..... ...+
T Consensus 331 ~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s 410 (902)
T 2oaj_A 331 PKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAA 410 (902)
T ss_dssp CSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEE
T ss_pred ccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEE
Confidence 234455555432 2688999999999999987753321 0001
Q ss_pred ------------------ccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE--e----e------cCCC
Q 002234 830 ------------------RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG--S----L------PTLS 879 (949)
Q Consensus 830 ------------------~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~--~----~------~~~~ 879 (949)
..+.+|...+.+++|+|++.++++++.|+ +|++||+.++.... . + .|..
T Consensus 411 ~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg-tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~ 489 (902)
T 2oaj_A 411 SVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG-SVRIYDASHGDIQDNASFEVNLSRTLNKAKEL 489 (902)
T ss_dssp EEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS-EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSC
T ss_pred EcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC-cEEEEECCCccccCCceEEeechhhcCCCCCC
Confidence 12345555566667789999999999997 99999998874210 0 1 4667
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECCCCc---------------------------------------------EEE
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI---------------------------------------------RIE 912 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~---------------------------------------------~~~ 912 (949)
.|++++|+|| ++++|+.||+|+|||+.+++ ++.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 8999999999 89999999999999997662 356
Q ss_pred EeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 913 TLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 913 ~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+ .+|.+.|++++||||| +||+|+.||+|++||+.
T Consensus 570 ~l-~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 570 AV-HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp EE-CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred EE-EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 66 4799999999999999 99999999999999974
No 50
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=5.3e-30 Score=281.57 Aligned_cols=244 Identities=20% Similarity=0.355 Sum_probs=210.4
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
....+.+|.+.|++++|+|+ +|++|+.||+|++||..++ +....+.+|...|.+++|+|++++|++|+.||+|++|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567899999999999997 9999999999999999998 7888899999999999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
|+.+++. ......+...|.++. |+|+++. +++|+.||.|++||+
T Consensus 93 d~~~~~~-~~~~~~~~~~v~~~~-------~~~~~~~----------------------------l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 93 DVSSGKC-LKTLKGHSNYVFCCN-------FNPQSNL----------------------------IVSGSFDESVRIWDV 136 (312)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEE-------ECSSSSE----------------------------EEEEETTSCEEEEET
T ss_pred ECCCCcE-EEEEcCCCCCEEEEE-------EcCCCCE----------------------------EEEEeCCCcEEEEEC
Confidence 9998852 223334566777766 7777664 889999999999999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCC--EEEE
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYL 893 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d--~l~s 893 (949)
++++.. ..+..|..+|.+++|+|++.++++++.|| .|++||+++++.+..+. +...+..++|+|+ ++++
T Consensus 137 ~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 137 KTGKCL------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp TTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred CCCEEE------EEecCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 999877 45667889999999999999999999997 99999999998887765 4678999999998 8999
Q ss_pred EECCCeEEEEECCCCcEEEEeccccccceeE--EEE-eCCCCEEEEEeCCCcEEEEeCC
Q 002234 894 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQC--MAL-DDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~--l~~-spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++.||.|++||+.+++.+..+. +|...+.+ ..| .+++.+|++|+.||.|++||+.
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred EcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 9999999999999999999884 66654332 233 4678999999999999999974
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2e-30 Score=296.49 Aligned_cols=282 Identities=17% Similarity=0.184 Sum_probs=231.9
Q ss_pred CCeEEEecCCceeeecC--CCCceEEEEEeCC---EEEEEeCCCcEEEEec----CCCce----eeeEEecc--------
Q 002234 650 SSADFWNHRELVHVDSS--ENGKVLSIACFRD---KIFSGHSDGTIKVWTG----RGSIL----HLIQQIRE-------- 708 (949)
Q Consensus 650 g~I~vWd~~~~~~~~~~--h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~----~t~~~----~~i~~l~~-------- 708 (949)
..+.+|+.+.....+.. |.+.|++++|+|+ +|++|+.||+|++||+ .++.. .....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 34557888765555554 5699999999996 8999999999999999 87730 03444443
Q ss_pred --cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 709 --HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 709 --H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
|.+.|++++|+|++++|++|+.||+|++||.... .......+...|.++. |+|+++.+++++.++.+++
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~v~~~~-------~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--LLNVLNFHRAPIVSVK-------WNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCCSCEEEEE-------ECTTSSEEEEEETTCCEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--eeeeccCCCccEEEEE-------ECCCCCEEEEEecCCeEEE
Confidence 6889999999999999999999999999994443 3333445778898888 9999999999999999999
Q ss_pred ecCCC------------C---------------ceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 787 LNSSK------------Y---------------PKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 787 ~~~~~------------~---------------v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
|+... . +.++.+.+ +.+++++.||.|++||+.++... ..+.+|..+
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~------~~~~~~~~~ 249 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT------GKLIGHHGP 249 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS------EEECCCSSC
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee------eeeccCCCc
Confidence 98532 1 66777764 77999999999999999998776 455678899
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEecc
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~ 916 (949)
|.+++|+|++.++++++.|+ .|++||+.+++.+..+. |...+.+++|+|+ .+++++.||.|++||+.+++.+..+.
T Consensus 250 i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 327 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDG-TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI- 327 (425)
T ss_dssp EEEEEEETTTTEEEEEETTS-CEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred eEEEEECCCCCEEEEEcCCC-EEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc-
Confidence 99999999999999999987 99999999999888887 7889999999999 89999999999999999999999884
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 917 GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|...|.+++|+|++++|++++.||.|++||+
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 78889999999999999999999999999997
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=1.1e-30 Score=341.71 Aligned_cols=303 Identities=17% Similarity=0.203 Sum_probs=242.2
Q ss_pred hhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC----EEEEEeCCCcEEEEecCCCceeee
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d----~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
.+....+++++.++++++.|++|++||.. .....+.+|.+.|++++|+|+ ++++|+.||+|++||+.++ .++
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~ 736 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--ECR 736 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SEE
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--chh
Confidence 34456677899999999999999999997 456778899999999999983 8999999999999999999 788
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe----------------------------------
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV---------------------------------- 749 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~---------------------------------- 749 (949)
..+.+|.+.|++++|+|+++++++++.||+|++||+.+++......
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999999999999998774211110
Q ss_pred --------------------ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec------------CCCCceEEE
Q 002234 750 --------------------HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYPKCLA 797 (949)
Q Consensus 750 --------------------~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~------------~~~~v~~v~ 797 (949)
..+...+.++ .|+|+++.+++++.++.+++|+ +...|.++.
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~-------~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYC-------DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEE-------EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEE-------EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE
Confidence 0122223333 3455555555555555555543 344455555
Q ss_pred EeC--CEEEEEECCCcEEEE------------------------------------------------------------
Q 002234 798 LVQ--GKVYCGCQDGAIQEI------------------------------------------------------------ 815 (949)
Q Consensus 798 ~~~--~~l~sgs~Dg~I~iw------------------------------------------------------------ 815 (949)
|++ ..+++++.||.|++|
T Consensus 890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 969 (1249)
T 3sfz_A 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence 543 234455555555555
Q ss_pred -------------------ECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 816 -------------------DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 816 -------------------d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
|+.++... ..+.+|...|++++|+|++.++++++.|| .|++||+.++.......
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~~~~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~~ 1042 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPNNRVF------SSGVGHKKAVRHIQFTADGKTLISSSEDS-VIQVWNWQTGDYVFLQA 1042 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTTTSCE------EECCCCSSCCCCEEECSSSSCEEEECSSS-BEEEEETTTTEEECCBC
T ss_pred cCCCCEEEEEcCCCCEEEEEcCCCcee------eecccCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCceEEEec
Confidence 44444433 34567999999999999999999999997 99999999999887777
Q ss_pred CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 877 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 877 ~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|...+.++.|+|+ .+++++.||+|++||+.+++....+ .+|.+.|++++|+|||+++++++.||+|++||+.
T Consensus 1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 8999999999998 8999999999999999999999998 4899999999999999999999999999999973
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.98 E-value=6.5e-31 Score=295.14 Aligned_cols=260 Identities=16% Similarity=0.195 Sum_probs=196.0
Q ss_pred EEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeC------CCcEEEEecCCCce--eeeEEecccCCCE
Q 002234 644 LSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS------DGTIKVWTGRGSIL--HLIQQIREHTKAV 713 (949)
Q Consensus 644 ~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~------Dg~I~vWd~~t~~~--~~i~~l~~H~~~V 713 (949)
+.++.+.....|+... .....|.+.|++++|+|| +|++|+. ||+|++|+..++.. .......+|...|
T Consensus 20 ~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V 97 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV 97 (357)
T ss_dssp ----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE
T ss_pred EecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE
Confidence 4445567778898753 234579999999999998 9999997 78899999887621 2233445799999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeE---EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 714 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIH---CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
++++|+|++. +++++.||+|++||+.+++.. ......|...|.++. |+|+|+.
T Consensus 98 ~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~-------~spdg~~---------------- 153 (357)
T 4g56_B 98 TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS-------VFSDGTQ---------------- 153 (357)
T ss_dssp EEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE-------ECSSSSE----------------
T ss_pred EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE-------ECCCCCE----------------
Confidence 9999999975 567888999999999887522 223345667777776 7777764
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCC
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~ 869 (949)
+++|+.||.|++||+.+++.. ..+.+|...|++++|++++. ++++++.|+ +|++||++++
T Consensus 154 ------------l~sgs~dg~v~iwd~~~~~~~------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~ 214 (357)
T 4g56_B 154 ------------AVSGGKDFSVKVWDLSQKAVL------KSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKP 214 (357)
T ss_dssp ------------EEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTCSSCEEEEETTS-CEEECCTTSS
T ss_pred ------------EEEEeCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCceeeeeccCC-ceEEEECCCC
Confidence 889999999999999999887 55678999999999998764 788888886 9999999998
Q ss_pred eeEEeec---CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCC-CEEEEEeCCCc
Q 002234 870 NMVGSLP---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGR 942 (949)
Q Consensus 870 ~~~~~~~---~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg-~~L~sgs~Dg~ 942 (949)
++...+. +...+.+++|+|+ ++++|+.|+.|++||+.+++.+.++ .+|...|++++|+|++ ++|++|+.||+
T Consensus 215 ~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 8777654 5677999999986 7899999999999999999999999 4899999999999997 68999999999
Q ss_pred EEEEeCC
Q 002234 943 IQAWGLS 949 (949)
Q Consensus 943 I~iWdl~ 949 (949)
|+|||+.
T Consensus 294 i~iwd~~ 300 (357)
T 4g56_B 294 VAVLDAD 300 (357)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 9999974
No 54
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=7.8e-30 Score=279.91 Aligned_cols=268 Identities=15% Similarity=0.273 Sum_probs=218.4
Q ss_pred ccccccEEEEecCCCCeEEEecCC--ceeee--cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEeccc
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE--LVHVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 709 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~--~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H 709 (949)
++.++ .|++ +.|++|+|||..+ ....+ .+|...|++++|+|+ ++++|+.||+|++||+.++ +++..+.+|
T Consensus 33 WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~~h 108 (318)
T 4ggc_A 33 WSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSH 108 (318)
T ss_dssp ECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECC
T ss_pred ECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEecCc
Confidence 34443 5555 4699999999874 34443 468889999999996 9999999999999999999 889999999
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
...+.++. +++..+++++.++.+++|+...+.........|...+..+. +.++++
T Consensus 109 ~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------------- 163 (318)
T 4ggc_A 109 SARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGR---------------- 163 (318)
T ss_dssp SSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS----------------
T ss_pred cceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE-------EcCCCC----------------
Confidence 99988755 45789999999999999999887644444555666666665 666665
Q ss_pred CCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCce---EEEEEECCCCEEEEEEC
Q 002234 790 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV---YTASTSLDGAAVKMWST 866 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~Dg~~I~iwd~ 866 (949)
.+++++.||.|++||+.+++...... .....|...|.++.+++++. .+++++.+ ++|++||.
T Consensus 164 ------------~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~lwd~ 228 (318)
T 4ggc_A 164 ------------HLASGGNDNLVNVWPSAPGEGGWVPL--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIWNV 228 (318)
T ss_dssp ------------EEEEEETTSCEEEEESSCBTTBSCCS--EEECCCCSCEEEEEECTTSTTEEEEEECTTT-CEEEEEET
T ss_pred ------------EEEEEecCcceeEEECCCCcccccce--eeecccCCceEEEEecCCCCcEEEEEecCCC-CEEEEEec
Confidence 48899999999999999876542221 34456778999999987543 23444555 49999999
Q ss_pred CCCeeEEeecCCCcEEEEEEcCC--EEEEE--ECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCc
Q 002234 867 SNYNMVGSLPTLSEVRAMVVSSE--LVYLG--CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGR 942 (949)
Q Consensus 867 ~~~~~~~~~~~~~~v~~l~~s~d--~l~sg--s~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~ 942 (949)
..........+...+..+.|+++ .++++ +.||.|++||+.+++++.++ .+|.+.|++++|+|||++|+||+.||+
T Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 229 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 99999888888999999999987 55544 47999999999999999999 489999999999999999999999999
Q ss_pred EEEEeC
Q 002234 943 IQAWGL 948 (949)
Q Consensus 943 I~iWdl 948 (949)
|+|||+
T Consensus 308 v~iWd~ 313 (318)
T 4ggc_A 308 LRLWRC 313 (318)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999997
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.5e-31 Score=302.04 Aligned_cols=280 Identities=13% Similarity=0.137 Sum_probs=210.5
Q ss_pred hccccccccccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc-eeee
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLI 703 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~-~~~i 703 (949)
+....+++++.+|++++.|+.|++||..+ ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++. ....
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 44566777899999999999999999874 45677899999999999996 99999999999999999884 3467
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee--EEEEeec-CCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--HCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~--~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
..+.+|...|++++|+|++++|++|+.||+|++||+++++. ....... |...|.++. |+|+++.
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~------ 160 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD-------WHPNNVL------ 160 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE-------ECTTSSE------
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE-------EcCCCCE------
Confidence 88889999999999999999999999999999999998741 1122222 667777776 7777764
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee------------eecccccccCCCCCEEEEEEeCCc
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT------------IQTGHRKLLGKANPVHALQVHNGL 848 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~------------~~~~~~~~~~h~~~V~~l~~~~~~ 848 (949)
+++|+.||.|++||+.++.... .......+ +|...|++++|+|++
T Consensus 161 ----------------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 161 ----------------------LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp ----------------------EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred ----------------------EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 8889999999999986433110 00011334 899999999999999
Q ss_pred eEEEEEECCCCEEEEEECCCCee----EEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc------------
Q 002234 849 VYTASTSLDGAAVKMWSTSNYNM----VGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI------------ 909 (949)
Q Consensus 849 ~~l~s~s~Dg~~I~iwd~~~~~~----~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~------------ 909 (949)
.++++++.|| +|++||+.+++. +..+. |...|.+++|+|+ ++++|+.++.+ +|+.....
T Consensus 218 ~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 218 NALAYAGHDS-SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp SCEEEEETTT-EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCC
T ss_pred CEEEEEeCCC-cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccc
Confidence 9999999997 999999999876 66665 6788999999998 67777666655 66654211
Q ss_pred ---------------------------EEE------------EeccccccceeEEEEeCCC-C---EEEEEeCCCcEEEE
Q 002234 910 ---------------------------RIE------------TLQTGTSGKVQCMALDDNE-E---FLVIGTSDGRIQAW 946 (949)
Q Consensus 910 ---------------------------~~~------------~l~~~h~~~I~~l~~spdg-~---~L~sgs~Dg~I~iW 946 (949)
... .+...|.+.|+++++.+++ . .|+||+.||+|++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 296 KTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375 (377)
T ss_dssp CCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence 000 1112388999999976544 3 69999999999999
Q ss_pred eC
Q 002234 947 GL 948 (949)
Q Consensus 947 dl 948 (949)
|+
T Consensus 376 dl 377 (377)
T 3dwl_C 376 TL 377 (377)
T ss_dssp CC
T ss_pred cC
Confidence 96
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=283.49 Aligned_cols=263 Identities=15% Similarity=0.236 Sum_probs=201.7
Q ss_pred ccccccEEEEecCCCCeEEEecCC----ceeee-cC-CCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC-----ceee
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE----LVHVD-SS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS-----ILHL 702 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~----~~~~~-~~-h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~-----~~~~ 702 (949)
+.+.+.+|++|+.|++|++||... ....+ .+ |.+.|++++|+|+ +|++|+.||+|++||+... ...+
T Consensus 20 ~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEE
T ss_pred eccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccccee
Confidence 444555999999999999999874 23333 44 9999999999996 9999999999999998532 1256
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-e-eEEE-EeecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-E-IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~-~-~~~~-~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
+..+.+|.+.|++++|+|+|++|++|+.|++|++||+... . ..+. ....|...|.++. |+|++..+++++
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~~l~s~s 172 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI-------WHPSEALLASSS 172 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE-------ECSSSSEEEEEE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE-------ECCCCCEEEEEc
Confidence 7888999999999999999999999999999999999532 2 2333 3345778899888 999999999999
Q ss_pred ecCeEEEec--------------CCCCceEEEEeCC----EEEEEECCCcEEEEECCCCcee--eeecccccccC-CCCC
Q 002234 780 RNGKTKLLN--------------SSKYPKCLALVQG----KVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLG-KANP 838 (949)
Q Consensus 780 ~~g~i~~~~--------------~~~~v~~v~~~~~----~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~-h~~~ 838 (949)
.|+.+++|+ |...|.++.|+++ .+++|+.|++|++||+.++... ........+.+ |..+
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 999999996 3457889999864 5899999999999998764210 00000123333 8899
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEee-c-CCC-cEEEEEEcC--C--EEEEEECCCeEEEEECCC
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSL-P-TLS-EVRAMVVSS--E--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~-~-~~~-~v~~l~~s~--d--~l~sgs~dg~I~vwd~~~ 907 (949)
|.+++|++++ ++++++.|| +|++||..++. ..... . |.. .|.+++|+| + +|++|+.||+|++||+++
T Consensus 253 v~~v~~s~~~-~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGADG-VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEECTTS-CEEEEETTS-CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEcCCC-EEEEEeCCC-EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999776 778888886 99999998774 33333 2 555 899999998 4 799999999999999865
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=4.9e-31 Score=295.30 Aligned_cols=269 Identities=15% Similarity=0.216 Sum_probs=216.8
Q ss_pred ccEEEEecCCCCeEEEecCC--ceeeec-----CCCCceEEEEEeCC------EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHVDS-----SENGKVLSIACFRD------KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~~~-----~h~~~V~~l~~s~d------~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
...+++++.++.|++||..+ ....+. .|.+.|++++|+|+ +|++|+.||+|++||+.++ +.+..+
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~ 111 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHY 111 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEE
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeee
Confidence 34566777777999999873 222332 36788999999987 8999999999999999998 788899
Q ss_pred cccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEe--ecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 707 REHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 707 ~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
.+|...|++++|+| ++++|++|+.||+|++||+.+++...... ..+...|.++. |+|+++.
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~--------- 175 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD-------YDLLGEK--------- 175 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE-------ECTTSSE---------
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE-------ECCCCCE---------
Confidence 99999999999999 99999999999999999999985322221 35677777777 7777764
Q ss_pred EEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecc----------------------cccccCCCCCEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG----------------------HRKLLGKANPVHA 841 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~----------------------~~~~~~h~~~V~~ 841 (949)
+++++.||.|++||+++++....+.. .....+|...|.+
T Consensus 176 -------------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 176 -------------------IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp -------------------EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred -------------------EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 88899999999999998765422111 0122348899999
Q ss_pred EEEeCCceEEEEEECCCCEEEEEECCCCee--------------EEeec-CCCcEEEEEEcCC----EEEEEECCCeEEE
Q 002234 842 LQVHNGLVYTASTSLDGAAVKMWSTSNYNM--------------VGSLP-TLSEVRAMVVSSE----LVYLGCKGGTVEI 902 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~--------------~~~~~-~~~~v~~l~~s~d----~l~sgs~dg~I~v 902 (949)
++|+ +.++++++.|+ .|++||+.++.. +..+. |...|++++|+|+ ++++|+.||.|++
T Consensus 237 ~~~~--~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~v 313 (366)
T 3k26_A 237 VRWL--GDLILSKSCEN-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYV 313 (366)
T ss_dssp EEEE--TTEEEEECSSS-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEE
T ss_pred EEEc--CCEEEEEecCC-EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEE
Confidence 9999 55888998886 999999987643 55555 6678888888865 7999999999999
Q ss_pred EECCCCc----EEEEecccc--ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 903 WDQKRQI----RIETLQTGT--SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 903 wd~~~~~----~~~~l~~~h--~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
||+.+++ ....+ .+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 314 wd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 314 WDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999876 33466 356 6899999999999999999999999999974
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=288.48 Aligned_cols=278 Identities=16% Similarity=0.213 Sum_probs=226.7
Q ss_pred eeeecCCCCceEEEEEeCC---EEEEEeC---CCcEEEEecCCCceeeeEEecccCCCEEEEEEecC---CCEEEEEeCC
Q 002234 661 VHVDSSENGKVLSIACFRD---KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLD 731 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d---~lasgs~---Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd---g~~L~Sgs~D 731 (949)
.....+|.+.|++++|+|+ ++++|+. ||+|++||+.+++...... .+|...|.+++|+|+ |++|++|+.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3456789999999999995 5667776 9999999999984333333 379999999999998 7999999999
Q ss_pred CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC-----------------Cce
Q 002234 732 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK-----------------YPK 794 (949)
Q Consensus 732 g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~-----------------~v~ 794 (949)
|+|++||+.+++........|...|.++.+.+. .+|+|+++.+++++.++.+++|+... .+.
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 999999999875233344467888988864321 13789999999999999999998421 466
Q ss_pred EEEE----e--CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC---CceEEEEEECCCCEEEEEE
Q 002234 795 CLAL----V--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN---GLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 795 ~v~~----~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~Dg~~I~iwd 865 (949)
++.+ + +..+++|+.||.|++||+++++... ...|...|.+++|+| ++.++++++.|| .|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-------ETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-------EEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-------ecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEe
Confidence 6763 2 3579999999999999999988642 345778999999999 899999999997 999999
Q ss_pred CCCCeeEEee------cCCCcEEEEEEcCC---EEEEEECCCeEEEEECCCC-------------------cEEEEeccc
Q 002234 866 TSNYNMVGSL------PTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ-------------------IRIETLQTG 917 (949)
Q Consensus 866 ~~~~~~~~~~------~~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~-------------------~~~~~l~~~ 917 (949)
+++++....+ .|...|.+++|+|+ ++++|+.||.|++||+.++ +.+..+ .+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 319 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TL 319 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-EC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-cc
Confidence 9887655443 37889999999998 6899999999999998754 356666 47
Q ss_pred cccceeEEEEeCCCCEEE-EEeCCCcEEEEeCC
Q 002234 918 TSGKVQCMALDDNEEFLV-IGTSDGRIQAWGLS 949 (949)
Q Consensus 918 h~~~I~~l~~spdg~~L~-sgs~Dg~I~iWdl~ 949 (949)
|.+.|++++|+|++++|+ +++.||.|++||+.
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999999999998 89999999999974
No 59
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=6.3e-30 Score=319.19 Aligned_cols=304 Identities=17% Similarity=0.160 Sum_probs=257.8
Q ss_pred HhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 628 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 628 ~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
...+....+++++.++++++.||.|++||..+ ....+.+|.++|++++|+|+ +|++|+.||+|++||+.++ +.+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~ 90 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKV 90 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEE
Confidence 33455667888999999999999999999874 56677899999999999996 9999999999999999999 788
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCCEEEEEEecC
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNG 782 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~~l~~~~~~g 782 (949)
..+.+|.+.|++++|+|++++|++++.||+|++||+.++.........+...|.++. |+| ++..+++++.++
T Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~-------~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-------FNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE-------EETTEEEEEEEEETTS
T ss_pred EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE-------EEcCCCCEEEEEeCCC
Confidence 899999999999999999999999999999999999987434444556778898888 999 889999999999
Q ss_pred eEEEecCC-------------CCceEEEEeC----CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe
Q 002234 783 KTKLLNSS-------------KYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 845 (949)
Q Consensus 783 ~i~~~~~~-------------~~v~~v~~~~----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 845 (949)
.+.+|+.. ..+.++.+++ ..+++|+.||.|++||+.+++.. ..+.+|..+|.+++|+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV------ATLEGHMSNVSFAVFH 237 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE------EEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE------EEEcCCCCCEEEEEEc
Confidence 99999842 5688888864 46999999999999999998876 4566788999999999
Q ss_pred CCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCCE---EEEEECCCeEEEEECCCCcEEEEec------
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSEL---VYLGCKGGTVEIWDQKRQIRIETLQ------ 915 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d~---l~sgs~dg~I~vwd~~~~~~~~~l~------ 915 (949)
|++.++++++.|| .|++||+.+++....+. +...+.+++|+|+. +++++.++.+.+|++..+.....+.
T Consensus 238 ~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 238 PTLPIIISGSEDG-TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp SSSSEEEEEETTS-CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred CCCCEEEEEeCCC-eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence 9999999999997 99999999999999888 67899999999982 4555557778899876533221110
Q ss_pred ------------------------------------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 916 ------------------------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 916 ------------------------------------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
..+...+.+++|+|||+++++++ ||.+.+|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 12344678999999999999888 899999985
No 60
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=9.2e-30 Score=285.43 Aligned_cols=266 Identities=14% Similarity=0.148 Sum_probs=225.5
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC---
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--- 698 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~--- 698 (949)
+|...+....+.+++.+|++|+.||+|++||.. ........|...|.+++|+|+ ++++|+.|+++++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 445556667788899999999999999999976 345667789999999999997 9999999999999998643
Q ss_pred -ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe--CCCEE
Q 002234 699 -ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP--QGAGI 775 (949)
Q Consensus 699 -~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp--~g~~l 775 (949)
.......+.+|.+.|.++.|+|+++.|++++.||+|++||+++++. ......|...|.++. |+| +|+.+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~g~~l 213 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLD-------LAPSETGNTF 213 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEE-------ECCCSSCCEE
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEE-------EEeCCCCCEE
Confidence 1134567788999999999999999999999999999999999862 233345677888877 655 67899
Q ss_pred EEEEecCeEEEecC------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEE
Q 002234 776 KVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 841 (949)
Q Consensus 776 ~~~~~~g~i~~~~~------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 841 (949)
++++.|+.+++|+. ...|.+++|++ ..+++|+.|++|++||++++.....+.. ..+...+.+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----~~~~~~~~~ 289 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK----ESIIFGASS 289 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----TTCCSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----CCcccceeE
Confidence 99999999999983 45688999985 5799999999999999998876644321 233457999
Q ss_pred EEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEE
Q 002234 842 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 904 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd 904 (949)
++|+|++.++++++.|+ +|++||+.+++.+..+. |...|.+++|+|| ++++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~-~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCC-cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999996 99999999999888887 7889999999998 899999999999996
No 61
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-31 Score=302.40 Aligned_cols=278 Identities=11% Similarity=0.149 Sum_probs=221.4
Q ss_pred hHhhhccccccc-cccEEEEecCCCCeEEEecCC---c---e-eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC
Q 002234 627 LRELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE---L---V-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 627 ~~~~~~~~~~~~-~~~~l~s~s~dg~I~vWd~~~---~---~-~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~ 696 (949)
|...+....+.+ ++.+|++|+.||+|++||..+ . . ....+|.+.|++++|+|+ +|++|+.||+|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 344555667777 899999999999999999864 1 1 222269999999999995 99999999999999995
Q ss_pred ---CCceeeeEEecc------------cCCCEEEEE--EecCCCEEEEEeCCCcEEEEECCCCeeE-EEEeecCCCceee
Q 002234 697 ---GSILHLIQQIRE------------HTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQN 758 (949)
Q Consensus 697 ---t~~~~~i~~l~~------------H~~~V~~v~--fspdg~~L~Sgs~Dg~I~vWd~~~~~~~-~~~~~~~~~~v~~ 758 (949)
++ +....+.+ +...+.++. +++++++|++|+.||+|++||+++++.. .+....|...|.+
T Consensus 142 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 219 (437)
T 3gre_A 142 HYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219 (437)
T ss_dssp EEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEE
T ss_pred cccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEE
Confidence 44 23332222 556677777 5578999999999999999999998632 2222226778888
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
+. |+|+++. +++|+.||.|++||+++++....+. .+|..+
T Consensus 220 ~~-------~s~~~~~----------------------------l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~ 259 (437)
T 3gre_A 220 IC-------IDEECCV----------------------------LILGTTRGIIDIWDIRFNVLIRSWS-----FGDHAP 259 (437)
T ss_dssp EE-------ECTTSCE----------------------------EEEEETTSCEEEEETTTTEEEEEEB-----CTTCEE
T ss_pred EE-------ECCCCCE----------------------------EEEEcCCCeEEEEEcCCccEEEEEe-----cCCCCc
Confidence 77 7777764 8899999999999999988774321 256779
Q ss_pred EEEEEEe----CCceEEEEEECCCCEEEEEECCCCeeEEeec---------------------------CCCcEEEEEEc
Q 002234 839 VHALQVH----NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------------------------TLSEVRAMVVS 887 (949)
Q Consensus 839 V~~l~~~----~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---------------------------~~~~v~~l~~s 887 (949)
|++++++ +++.++++++.|| .|++||+++++++..+. |...|++++|+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTTE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred eEEEEeccccCCCccEEEEEcCCC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 9999665 5788999999987 99999999999877765 33458889999
Q ss_pred CC-EEEEEECCCeEEEEECCCCcEEEEeccc------------------------------------cccceeEEEEeCC
Q 002234 888 SE-LVYLGCKGGTVEIWDQKRQIRIETLQTG------------------------------------TSGKVQCMALDDN 930 (949)
Q Consensus 888 ~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~------------------------------------h~~~I~~l~~spd 930 (949)
++ ++++|+.||.|++||+.+++....+... |.+.|++++|+++
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence 66 8999999999999999999877777421 8889999999998
Q ss_pred --CCEEEEEeCCCcEEEEe
Q 002234 931 --EEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 931 --g~~L~sgs~Dg~I~iWd 947 (949)
+.+|++|+.||.|+||+
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 78999999999999995
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=2.2e-29 Score=303.12 Aligned_cols=296 Identities=14% Similarity=0.169 Sum_probs=255.0
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecCC------ceeeecCCCCc-eEEEEEeC--C--EEEEEeCCCcEEEEecCC
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGK-VLSIACFR--D--KIFSGHSDGTIKVWTGRG 697 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~-V~~l~~s~--d--~lasgs~Dg~I~vWd~~t 697 (949)
..+....+++++.++++++ ++.|++||..+ ....+.+|.+. |++++|+| + +|++|+.||+|++||+.+
T Consensus 19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence 3455677888999999998 88999999873 56778899999 99999999 6 999999999999999975
Q ss_pred C------ceeeeEEecccCCCEEEEEEecCCCEEEEEeCC----CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEE
Q 002234 698 S------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILC 767 (949)
Q Consensus 698 ~------~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D----g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 767 (949)
+ .......+.+|...|.+++|+|++++|++++.| +.|++||... .......|...|.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~v~~~~------- 167 (615)
T 1pgu_A 98 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACH------- 167 (615)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEE-------
T ss_pred CcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---cceeeecCCccEEEEE-------
Confidence 5 447788899999999999999999999999988 7899998332 3344456788898888
Q ss_pred EEeCCC-EEEEEEecCeEEEec------------CCC---CceEEEEeCC---EEEEEECCCcEEEEECCCCceeeeecc
Q 002234 768 FIPQGA-GIKVHLRNGKTKLLN------------SSK---YPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQTG 828 (949)
Q Consensus 768 fsp~g~-~l~~~~~~g~i~~~~------------~~~---~v~~v~~~~~---~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 828 (949)
|+|+++ .+++++.++.+++|+ +.. .|.+++|+++ .+++++.||.|++||+.+++...
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---- 243 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---- 243 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE----
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE----
Confidence 999998 799999999999998 345 7999999865 69999999999999999998874
Q ss_pred cccc-c---CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC-----CcEEEEEEc-CCEEEEEECCC
Q 002234 829 HRKL-L---GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVS-SELVYLGCKGG 898 (949)
Q Consensus 829 ~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s-~d~l~sgs~dg 898 (949)
.+ . +|..+|.+++|+ ++.++++++.|+ .|++||+.+++.+..+... ..+.++.++ .+++++|+.||
T Consensus 244 --~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 319 (615)
T 1pgu_A 244 --YIEDDQEPVQGGIFALSWL-DSQKFATVGADA-TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319 (615)
T ss_dssp --ECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred --EecccccccCCceEEEEEc-CCCEEEEEcCCC-cEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence 33 3 788999999999 999999999996 9999999999999888744 667888885 34999999999
Q ss_pred eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 899 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 899 ~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|++||+.+++.+..+ .+|.+.|++++| |+ +++++.||.|++||+
T Consensus 320 ~i~~~d~~~~~~~~~~-~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTI-SGHNKGITALTV-NP---LISGSYDGRIMEWSS 364 (615)
T ss_dssp CEEEEETTEEEEEEEE-CCCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred CEEEEECCCCcEEEEE-eCCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence 9999999999999988 488889999999 87 888888888888876
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=6.1e-29 Score=277.40 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=199.7
Q ss_pred ceeeecCCCCceEEEEE-----eC-C--EEEEEeCCCcEEEEecCCCc-----eeeeEEecccCCCEEEEEEecCCCEEE
Q 002234 660 LVHVDSSENGKVLSIAC-----FR-D--KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEMLY 726 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~-----s~-d--~lasgs~Dg~I~vWd~~t~~-----~~~i~~l~~H~~~V~~v~fspdg~~L~ 726 (949)
....+.+|.+.|++++| ++ + +|+||+.||+|++||+.++. ..+...+.+|...|++++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678899999999999 55 4 99999999999999997542 146678899999999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE
Q 002234 727 SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 806 (949)
Q Consensus 727 Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg 806 (949)
+|+.|++|++||+.+++ .......|...|.++. |+|+|+. +++|
T Consensus 93 s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~-------~sp~~~~----------------------------l~s~ 136 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVA-------FSPDNRQ----------------------------ILSA 136 (343)
T ss_dssp EEETTSEEEEEETTSSC-EEEEEECCCSCEEEEE-------ECSSTTE----------------------------EEEE
T ss_pred EEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEE-------ECCCCCE----------------------------EEEE
Confidence 99999999999999985 2233345677888877 8888874 8899
Q ss_pred ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc----------eEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 807 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----------VYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----------~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
+.|++|++||+....... . ....+|...|.+++|+|++ .++++++.|+ +|++||. ++.....+.
T Consensus 137 ~~d~~i~~wd~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~ 210 (343)
T 2xzm_R 137 GAEREIKLWNILGECKFS-S---AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNT-NFQIRYTFK 210 (343)
T ss_dssp ETTSCEEEEESSSCEEEE-C---CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-EEEEEET-TTEEEEEEE
T ss_pred cCCCEEEEEeccCCceee-e---ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-EEEEEcC-CCceeEEEc
Confidence 999999999998433221 1 2334788999999999886 7899999997 9999994 456666665
Q ss_pred -CCCcEEEEEEcCC--EEEEEECCCeEEEEECC-CCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 877 -TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 877 -~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~-~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
|...|.+++|+|+ ++++|+.||+|++||+. .......+. +...|.+++|+|++++++++ .|+.|++||+
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~ 283 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNL 283 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence 7889999999998 89999999999999994 444555553 44579999999999887655 5888999997
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=288.88 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=230.2
Q ss_pred CCeEEEecC--CceeeecCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCCCceeeeEEe-------------cccCC
Q 002234 650 SSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQI-------------REHTK 711 (949)
Q Consensus 650 g~I~vWd~~--~~~~~~~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~i~~l-------------~~H~~ 711 (949)
+.+++|+.. .....+.+|.+.|++++|+| + +|++|+.||+|++||+.++. ....+ .+|..
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--RQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS--SSSCEEECEEEEECTTCTTCCSS
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc--ccceEeccccccccccccccCCC
Confidence 345666655 56778889999999999999 5 99999999999999999873 33222 25999
Q ss_pred CEEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe---CCCEEEEEEecCeEEEe
Q 002234 712 AVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP---QGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 712 ~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp---~g~~l~~~~~~g~i~~~ 787 (949)
.|.+++|+| ++++|++++.||+|++||+.+++ ......+...+.++. |+| ++..++++..++.+.+|
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFEETVYSHH-------MSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEE-------ECSSCSSCCEEEEEESSSSEEEE
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceeccCCCceeeeE-------eecCCCCCcEEEEEcCCCeEEEE
Confidence 999999999 78899999999999999999985 333444567777777 555 55699999999999999
Q ss_pred c------------CCCCceEEEEeCC---EEEEEECCCcEEEEECCCCce-eeeec---------ccccccCCCCCEEEE
Q 002234 788 N------------SSKYPKCLALVQG---KVYCGCQDGAIQEIDLATGTF-ATIQT---------GHRKLLGKANPVHAL 842 (949)
Q Consensus 788 ~------------~~~~v~~v~~~~~---~l~sgs~Dg~I~iwd~~~~~~-~~~~~---------~~~~~~~h~~~V~~l 842 (949)
+ +...|.+++++++ .+++|+.||.|++||++++.. ...+. ......+|...|.++
T Consensus 172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 7 3467899999863 488999999999999988762 22111 012236788999999
Q ss_pred EEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-------CCcEEEEEEcC-CEEEEEECCCeEEEEECCCCcEEEEe
Q 002234 843 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSS-ELVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~-d~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
+|+|++.++++++.|| .|++||+.+++....+.. ........... ..+++++.++.|++||+.+++.+..+
T Consensus 252 ~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 330 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDN-RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML 330 (408)
T ss_dssp EECTTSSEEEEEETTS-CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEcCCCCEEEEecCCC-eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence 9999999999999997 999999998876554431 11111222222 26778888999999999999999999
Q ss_pred ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 915 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 915 ~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+|.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 331 -~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 331 -KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp -CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred -ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 4899999999999999999999999999999974
No 65
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.1e-30 Score=295.84 Aligned_cols=276 Identities=14% Similarity=0.138 Sum_probs=228.6
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCC---
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--- 698 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~--- 698 (949)
+|...+....+++++.+|++|+.|++|++||..+ ....+.+|...|.+++|+|+ +|++|+.|++|++||+.+.
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 4445566677888999999999999999999873 56678899999999999997 9999999999999998753
Q ss_pred --ceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEe----ecCCCceeeeeeccceEEEEe-
Q 002234 699 --ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV----HDIKDQIQNLAVSNSILCFIP- 770 (949)
Q Consensus 699 --~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~fsp- 770 (949)
.......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++...... ..|...|.++. |++
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~ 216 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS-------INSL 216 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE-------ECSS
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE-------eecC
Confidence 12345678899999999999996 5679999999999999999986332221 24566777776 655
Q ss_pred CCCEEEEEEecCeEEEecC-------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccc-cccC
Q 002234 771 QGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR-KLLG 834 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~-------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~ 834 (949)
++..+++++.|+.+++|+. ...|.+++|++ ..+++|+.||+|++||++++.....+.... ....
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 8899999999999999984 34688999986 479999999999999999998876554321 1123
Q ss_pred CCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEee----c-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCC
Q 002234 835 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL----P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 835 h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~----~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~ 907 (949)
+...|++++|+|++.++++++.|| .|++||+.+++.+..+ . |...|.+++|+|| ++++|+.||+|++|++..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNG-DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTS-CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ccCceEEEEECCCCCEEEEEECCC-CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 345689999999999999999987 9999999998887766 2 7788999999998 899999999999999876
Q ss_pred Cc
Q 002234 908 QI 909 (949)
Q Consensus 908 ~~ 909 (949)
.+
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 66
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-29 Score=311.51 Aligned_cols=308 Identities=8% Similarity=0.052 Sum_probs=231.0
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCCcee-eecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELVH-VDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~-~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
-+....+++++.+|++|+.||+|++|+...... ....|.+.|++++|+|+ +|++++.|++|++||+.++ +++..+.
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~--~~~~~~~ 96 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ--KVLTTVF 96 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC--SEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC--cEEEEEc
Confidence 345667788999999999999999999875432 23458899999999997 7999999999999999998 6777775
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe----------ecCCCceeeeeeccceEEEEeC-CCEEE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV----------HDIKDQIQNLAVSNSILCFIPQ-GAGIK 776 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~----------~~~~~~v~~l~~~~~~~~fsp~-g~~l~ 776 (949)
|.+.|++++|+|++++|++|+.||+|++||+.+++...... ..|.++|.++. |+|+ +..++
T Consensus 97 -~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~-------~sp~~~~~l~ 168 (902)
T 2oaj_A 97 -VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ-------WNPRDIGTVL 168 (902)
T ss_dssp -CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE-------EETTEEEEEE
T ss_pred -CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE-------EccCCCCEEE
Confidence 77899999999999999999999999999999986432221 34567888887 8985 46888
Q ss_pred EEEecCeEEEecCC------------------------------CCceEEEEeC--CEEEEEECCCcEEEEECCCCceee
Q 002234 777 VHLRNGKTKLLNSS------------------------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 777 ~~~~~g~i~~~~~~------------------------------~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
++..++.+ +|+.. ..|.+++|++ ..|++|+.||+|++||+++++.+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 88899999 99732 4589999986 469999999999999999988764
Q ss_pred eecc-----cccc----c---CCCCCEEEEEEe----CCc-eEEEEEECCC-----------------------------
Q 002234 825 IQTG-----HRKL----L---GKANPVHALQVH----NGL-VYTASTSLDG----------------------------- 858 (949)
Q Consensus 825 ~~~~-----~~~~----~---~h~~~V~~l~~~----~~~-~~l~s~s~Dg----------------------------- 858 (949)
.... +... . .|..+|++++|+ |++ .++++++.|+
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 3110 0000 0 234568888884 332 3444443321
Q ss_pred ----------------------------------------------CEEEEEECCCCeeEEe-------ec-CCCcEEEE
Q 002234 859 ----------------------------------------------AAVKMWSTSNYNMVGS-------LP-TLSEVRAM 884 (949)
Q Consensus 859 ----------------------------------------------~~I~iwd~~~~~~~~~-------~~-~~~~v~~l 884 (949)
++|++||+.++..... +. |+..|+++
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 1455555544432211 11 22445554
Q ss_pred EE----------------------------------cCC--EEEEEECCCeEEEEECCCCcEE----EEec------ccc
Q 002234 885 VV----------------------------------SSE--LVYLGCKGGTVEIWDQKRQIRI----ETLQ------TGT 918 (949)
Q Consensus 885 ~~----------------------------------s~d--~l~sgs~dg~I~vwd~~~~~~~----~~l~------~~h 918 (949)
++ +|+ ++++|+.||+|++||+.++... .... .+|
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 44 566 7999999999999999887421 1110 278
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 919 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...|++++|+|||++||+|+.||+|++||+
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 889999999999999999999999999996
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.2e-28 Score=283.13 Aligned_cols=264 Identities=23% Similarity=0.398 Sum_probs=231.4
Q ss_pred eeeecCCCCc-eEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 661 VHVDSSENGK-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 661 ~~~~~~h~~~-V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
...+.+|.+. ++++.++++++++|+.||+|++||+.++ +.+..+.+|.+.|+++.|+ ++++++|+.||+|++||+
T Consensus 111 ~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 3567788876 5888998899999999999999999999 7899999999999999997 679999999999999999
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEeCCEEEEEE
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQGKVYCGC 807 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~~~~l~sgs 807 (949)
.+++. ......|...|.++. | +++.+++++.++.+++|+. ...+.++.+.++.+++|+
T Consensus 187 ~~~~~-~~~~~~h~~~v~~~~-------~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 256 (445)
T 2ovr_B 187 ETGEC-IHTLYGHTSTVRCMH-------L--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 256 (445)
T ss_dssp TTTEE-EEEECCCSSCEEEEE-------E--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred CcCcE-EEEECCCCCcEEEEE-------e--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEc
Confidence 99852 233345677787766 4 4678999999999999973 456889999888899999
Q ss_pred CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEE
Q 002234 808 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVV 886 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 886 (949)
.||.|++||+.+++.. ..+.+|...|.++.| ++.++++++.|| .|++||+++++.+..+. |...+.++.+
T Consensus 257 ~dg~i~iwd~~~~~~~------~~~~~~~~~v~~~~~--~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 257 YDFMVKVWDPETETCL------HTLQGHTNRVYSLQF--DGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp TTSCEEEEEGGGTEEE------EEECCCSSCEEEEEE--CSSEEEEEETTS-CEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred CCCEEEEEECCCCcEe------EEecCCCCceEEEEE--CCCEEEEEeCCC-eEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence 9999999999998877 456678899999999 778899999997 99999999999999887 7788999999
Q ss_pred cCCEEEEEECCCeEEEEECCCCcEEEEecc--ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 887 SSELVYLGCKGGTVEIWDQKRQIRIETLQT--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 887 s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~--~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+++++++|+.||.|++||+.+++.+..+.. .|...|++++|+ +++|++|+.||.|++||+.
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 999999999999999999999999999853 378899999995 6899999999999999974
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=280.78 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=207.3
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTAR 735 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~ 735 (949)
...++.+|.+.|++++|+|+ +|++|+.||+|++||+.++....+..+.+|.+.|++++|+++ +++|++|+.||+|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 34677899999999999996 999999999999999985544788899999999999999976 99999999999999
Q ss_pred EEECCCCeeEEEE-eecCCCceeeeeeccceEEEEeC--CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcE
Q 002234 736 VWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 812 (949)
Q Consensus 736 vWd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~fsp~--g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I 812 (949)
+||+.+++..... ...+...|.++. |+|+ +. .+++++.||.|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------------------------~l~~~~~d~~i 127 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------LLLVASSDGKV 127 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEE-------eCCCCCCC----------------------------EEEEecCCCcE
Confidence 9999998633333 334667777777 7777 55 48899999999
Q ss_pred EEEECCCCceeeeecccccccCCCCCEEEEEEeC-------------CceEEEEEECCCCEEEEEECCCCe----eEEee
Q 002234 813 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-------------GLVYTASTSLDGAAVKMWSTSNYN----MVGSL 875 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-------------~~~~l~s~s~Dg~~I~iwd~~~~~----~~~~~ 875 (949)
++||+.++..... ..+.+|...|.+++|+| ++.++++++.|| .|++||++++. ....+
T Consensus 128 ~v~d~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 128 SVVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTL 202 (379)
T ss_dssp EEEECCTTSCCCE----EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCCceee----EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCCCcceeeEEEE
Confidence 9999998754322 34567889999999999 699999999997 99999998764 34455
Q ss_pred c-CCCcEEEEEEcCC-----EEEEEECCCeEEEEECCCCc---EEEEe-ccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 876 P-TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI---RIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 876 ~-~~~~v~~l~~s~d-----~l~sgs~dg~I~vwd~~~~~---~~~~l-~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
. |...|.+++|+|+ ++++++.||.|++||+.++. ....+ ...|...|++++|+|+|++|++++.||.|++
T Consensus 203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 5 7789999999986 69999999999999998874 12222 1247889999999999999999999999999
Q ss_pred EeC
Q 002234 946 WGL 948 (949)
Q Consensus 946 Wdl 948 (949)
|++
T Consensus 283 w~~ 285 (379)
T 3jrp_A 283 WKE 285 (379)
T ss_dssp EEE
T ss_pred EeC
Confidence 996
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-30 Score=290.89 Aligned_cols=272 Identities=11% Similarity=0.150 Sum_probs=229.8
Q ss_pred CceEEEEEeCC---EEEEE----------eCCCcEEEEecCCCcee-eeEEecccCCCEEEEEEecCCCEEEEEeCCCcE
Q 002234 669 GKVLSIACFRD---KIFSG----------HSDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 734 (949)
Q Consensus 669 ~~V~~l~~s~d---~lasg----------s~Dg~I~vWd~~t~~~~-~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I 734 (949)
..|.+++|+|+ ++++| +.||+|++||+.++... .+..+ .|...|++++|+|++++|++|+.||+|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 46788999996 88999 89999999999987322 33344 689999999999999999999999999
Q ss_pred EEEECCC---CeeEEEEeecCCCceeeeeeccceEEEEeC-CCEEEEEEecCeEEEecCC--------------------
Q 002234 735 RVWSIGN---EEIHCVQVHDIKDQIQNLAVSNSILCFIPQ-GAGIKVHLRNGKTKLLNSS-------------------- 790 (949)
Q Consensus 735 ~vWd~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~-g~~l~~~~~~g~i~~~~~~-------------------- 790 (949)
++||+.+ +.........|...|.++. |+|+ ++.+++++.++.+++|+..
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVK-------FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEE-------ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EEeecccccccccchhhccCCccceEEEE-------EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 9999988 2224444456788899888 9998 8999999999999999732
Q ss_pred -CCceEEEEeCC---EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEECCC--CEEEE
Q 002234 791 -KYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDG--AAVKM 863 (949)
Q Consensus 791 -~~v~~v~~~~~---~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg--~~I~i 863 (949)
..+.+++++++ .+++++.||.|++||+++++....+..+....+|...|.+++|+|++ .++++++.|+ +.|++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 34678999863 69999999999999999998886655444445568899999999986 6788887763 28999
Q ss_pred EECCCC-eeEEeec--CCCcEEEEEEcC-C--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCC-CEEEE
Q 002234 864 WSTSNY-NMVGSLP--TLSEVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVI 936 (949)
Q Consensus 864 wd~~~~-~~~~~~~--~~~~v~~l~~s~-d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg-~~L~s 936 (949)
||++++ .+...+. |...|.+++|+| + ++++++.||.|++||+.+++.+..+. +|.+.|++++|+|++ .+|++
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEE
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEE
Confidence 999986 5666775 778999999998 5 89999999999999999999999994 899999999999999 89999
Q ss_pred EeCCCcEEEEeCC
Q 002234 937 GTSDGRIQAWGLS 949 (949)
Q Consensus 937 gs~Dg~I~iWdl~ 949 (949)
++.||+|++||+.
T Consensus 324 ~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 324 ASFDNKIEVQTLQ 336 (416)
T ss_dssp CCSSSEEEEEESC
T ss_pred EecCCcEEEEEcc
Confidence 9999999999974
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.1e-28 Score=273.24 Aligned_cols=252 Identities=19% Similarity=0.275 Sum_probs=206.3
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc--eeeeEEecccCCCEEEEEEec--CCCEEEEEeCCCcE
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTA 734 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~--~~~i~~l~~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I 734 (949)
...+.+|.+.|++++|+|+ +|++|+.||+|++||+.++. ......+.+|...|++++|+| ++++|++|+.||+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999996 99999999999999998652 246777889999999999999 69999999999999
Q ss_pred EEEECCCCee--------EEEEeecCCCceeeeeeccceEEEEeC--CCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 735 RVWSIGNEEI--------HCVQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 735 ~vWd~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~fsp~--g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
++||+.+++. .......+...|.++. |+|+ +. .++
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------------------------~l~ 128 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVK-------FAPAHLGL----------------------------KLA 128 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEE
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEE-------EcCCCCCc----------------------------EEE
Confidence 9999988631 1222334556666665 6665 54 488
Q ss_pred EEECCCcEEEEECCCCceeeeecc-------cccccCCCCCEEEEEEeCC---ceEEEEEECCCCEEEEEECCCCee--E
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTG-------HRKLLGKANPVHALQVHNG---LVYTASTSLDGAAVKMWSTSNYNM--V 872 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~h~~~V~~l~~~~~---~~~l~s~s~Dg~~I~iwd~~~~~~--~ 872 (949)
+++.||.|++||+++++....+.. .....+|...+.++.|+|+ +.++++++.|+ .+.+|+...+.. +
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-AIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-EEEEEECTTSCEEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-cEEEEccCCCceeee
Confidence 999999999999998876532211 0122367889999999997 88999999886 888888877765 5
Q ss_pred Eeec-CCCcEEEEEEcCC------EEEEEECCCeEEEEECCCC-------------------------------------
Q 002234 873 GSLP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ------------------------------------- 908 (949)
Q Consensus 873 ~~~~-~~~~v~~l~~s~d------~l~sgs~dg~I~vwd~~~~------------------------------------- 908 (949)
..+. |...|++++|+|+ ++++|+.||.|++||+.++
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 5555 7889999999998 5999999999999999875
Q ss_pred ---------cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 909 ---------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 909 ---------~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.+..+ .+|.+.|++++|+|++++|++|+.||.|++||++
T Consensus 288 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 288 AELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ---CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 566666 4899999999999999999999999999999974
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.5e-29 Score=277.01 Aligned_cols=274 Identities=12% Similarity=0.188 Sum_probs=226.2
Q ss_pred CceeeecCCCCceEEEEEeCC-----EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCc
Q 002234 659 ELVHVDSSENGKVLSIACFRD-----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 733 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d-----~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~ 733 (949)
.....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+........+.+|.+.|++++|+|++++|++++.||+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 456778899999999999984 899999999999999997322444788899999999999999999999999999
Q ss_pred EEEEECCCCeeEEEEeecCCCceeeeeeccceEEE--EeCCCEEEEEEecCeEEEecCC-----------CCceEEEEeC
Q 002234 734 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF--IPQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALVQ 800 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~f--sp~g~~l~~~~~~g~i~~~~~~-----------~~v~~v~~~~ 800 (949)
|++||+.+++ ......+...|.++. | +|+++.+++++.++.+++|+.. ..+.++.+.+
T Consensus 110 v~iwd~~~~~--~~~~~~~~~~v~~~~-------~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 110 AKMWDLSSNQ--AIQIAQHDAPVKTIH-------WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp EEEEETTTTE--EEEEEECSSCEEEEE-------EEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred EEEEEcCCCC--ceeeccccCceEEEE-------EEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 9999999985 334556788999988 7 8899999999999999999853 3456677778
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE----EEEEECCCCEEEEEECCCC---eeEE
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY----TASTSLDGAAVKMWSTSNY---NMVG 873 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~----l~s~s~Dg~~I~iwd~~~~---~~~~ 873 (949)
+.+++++.|+.+.+||+......... ....+...+.++.+.++... +++++.|| .|++||++.. ....
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRR----IESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHYINPPNPAKDNF 255 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEE----CCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEESSCSCHHHHSE
T ss_pred CeeEEEeCCCcEEEEEeccccchhhh----ccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEecCCCCccccce
Confidence 88999999999999999887654321 11233445666666544333 88888886 9999999987 4455
Q ss_pred eecCC-C------------cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEe
Q 002234 874 SLPTL-S------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 874 ~~~~~-~------------~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
.+..+ . .|.+++|+|+ ++++|+.||.|++||+.+++++..+. +|...|++++|+|||++|++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEe
Confidence 55532 2 6999999998 89999999999999999999999994 8999999999999999999999
Q ss_pred CCCcEEEEe
Q 002234 939 SDGRIQAWG 947 (949)
Q Consensus 939 ~Dg~I~iWd 947 (949)
.|+..+.|+
T Consensus 335 ~d~~~~~~~ 343 (368)
T 3mmy_A 335 SYDWSKGHE 343 (368)
T ss_dssp CCCSTTCGG
T ss_pred ccccccccc
Confidence 988655443
No 72
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.9e-28 Score=278.84 Aligned_cols=237 Identities=22% Similarity=0.390 Sum_probs=198.1
Q ss_pred cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCC------------------CEEEEEEecCCCE
Q 002234 665 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK------------------AVTGLAILQSGEM 724 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~------------------~V~~v~fspdg~~ 724 (949)
.+|.+.|.+++|+|+ +|++|+ |+++++|++.++ ..+..+..|.. .|.+++|+|+|++
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 369999999999997 888876 789999999998 66777765542 4999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 725 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 725 L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
|++|+.||+|++||+.+++. ......|...|.++. |+|+++. ++
T Consensus 138 l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~-------~~p~~~~----------------------------l~ 181 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLD-------YFPSGDK----------------------------LV 181 (393)
T ss_dssp EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSSE----------------------------EE
T ss_pred EEEEcCCCeEEEEECCCCcE-EEEEccCCCCEEEEE-------EcCCCCE----------------------------EE
Confidence 99999999999999999852 233445677788877 7787764 88
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEee--------
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSL-------- 875 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~-------- 875 (949)
+|+.|++|++||+++++....+ .+...+.+++++| ++.++++++.|+ .|++||++++..+..+
T Consensus 182 s~s~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~ 253 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQCSLTL-------SIEDGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGT 253 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------C
T ss_pred EecCCCcEEEEECCCCeeEEEE-------EcCCCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCC
Confidence 9999999999999998876432 2456899999998 899999999997 9999999999887766
Q ss_pred cCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC------------cEEEEeccccccceeEEEEeCCCCEEEEEeCCC
Q 002234 876 PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 876 ~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~------------~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
.|...|.+++|+|+ ++++|+.||+|++||+.+. .+...+ .+|.+.|.+++|+|++++|++|+.||
T Consensus 254 ~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCC
Confidence 26778999999998 8999999999999998763 344556 48999999999999999999999999
Q ss_pred cEEEEeCC
Q 002234 942 RIQAWGLS 949 (949)
Q Consensus 942 ~I~iWdl~ 949 (949)
+|++||+.
T Consensus 333 ~v~iwd~~ 340 (393)
T 1erj_A 333 GVLFWDKK 340 (393)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 99999973
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.4e-28 Score=273.06 Aligned_cols=263 Identities=12% Similarity=0.144 Sum_probs=226.4
Q ss_pred eeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc-eeeeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEE
Q 002234 662 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVW 737 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~-~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vW 737 (949)
....+|.+.|++++|+|+ +|++|+.||+|++||+.++. ......+.+|...|++++|+|+++ +|++|+.||+|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345689999999999996 99999999999999998873 113455668999999999999999 99999999999999
Q ss_pred EC-CCCeeEEEEeec--CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC--------------------CCce
Q 002234 738 SI-GNEEIHCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS--------------------KYPK 794 (949)
Q Consensus 738 d~-~~~~~~~~~~~~--~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~--------------------~~v~ 794 (949)
|+ .+++. ..... +...|.++. |+| +..+++++.++.+++|+.. ..+.
T Consensus 85 d~~~~~~~--~~~~~~~~~~~v~~l~-------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 85 DLIGSPSF--QALTNNEANLGICRIC-------KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp CSSSSSSE--EECBSCCCCSCEEEEE-------EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred EeccCCce--EeccccCCCCceEEEE-------eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE
Confidence 99 88754 33344 788898888 999 9999999999999999732 3588
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCC-CceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCC---
Q 002234 795 CLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY--- 869 (949)
Q Consensus 795 ~v~~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~--- 869 (949)
++.++++.+++++.||.|++||+++ +..... .....|...+.+++|+| ++.++++++.|| .|++||+...
T Consensus 155 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT----IEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGDD 229 (342)
T ss_dssp EEEECSSEEEEEESTTEEEEEESSCCTTCCCE----EEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTTCCS
T ss_pred EEEecCCcEEEEeCCCeEEEEECCccccccce----eeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCCCcc
Confidence 9999998899999999999999998 553211 23346778999999999 999999999987 9999999876
Q ss_pred ---eeEEeec-CCC---------cEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecccc-ccceeEEEEeCCCCE
Q 002234 870 ---NMVGSLP-TLS---------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEF 933 (949)
Q Consensus 870 ---~~~~~~~-~~~---------~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h-~~~I~~l~~spdg~~ 933 (949)
+....+. |.. .|.+++|+|+ ++++|+.||.|++||+.+++.+..+. +| .+.|++++ |++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--ECSSE
T ss_pred cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--CCCCe
Confidence 6666665 433 8999999997 79999999999999999999999995 66 99999999 99999
Q ss_pred EEEEeCCCc
Q 002234 934 LVIGTSDGR 942 (949)
Q Consensus 934 L~sgs~Dg~ 942 (949)
|++|+.||+
T Consensus 307 l~s~s~Dg~ 315 (342)
T 1yfq_A 307 LCLATSDDT 315 (342)
T ss_dssp EEEEEECTH
T ss_pred EEEEecCCc
Confidence 999999998
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=288.64 Aligned_cols=277 Identities=12% Similarity=0.191 Sum_probs=215.3
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecCC-------------ceeeecCCC------------CceEEEEEeCC----
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------------LVHVDSSEN------------GKVLSIACFRD---- 679 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~-------------~~~~~~~h~------------~~V~~l~~s~d---- 679 (949)
..+....+++++.+|++|+.||.|++||..+ ....+.+|. +.|++++|+|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 3455667788999999999999999999873 356778898 88999999985
Q ss_pred EEEEEeCCCcEEEEecCCCcee-------------------------------------eeEE-ecccCCCEEEEEEecC
Q 002234 680 KIFSGHSDGTIKVWTGRGSILH-------------------------------------LIQQ-IREHTKAVTGLAILQS 721 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~-------------------------------------~i~~-l~~H~~~V~~v~fspd 721 (949)
+|++++.||+|++||+.++... +... ..+|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 7999999999999999875210 1112 3689999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEE--------eecCCCceeeeeeccceEEEEeCC-CEEEEEEecCeEEEecCCCC
Q 002234 722 GEMLYSGSLDKTARVWSIGNEEIHCVQ--------VHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNSSKY 792 (949)
Q Consensus 722 g~~L~Sgs~Dg~I~vWd~~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~fsp~g-~~l~~~~~~g~i~~~~~~~~ 792 (949)
+++|++| .||+|++||+.++. .... ...|...|.++. |+|++ +
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-------~~p~~~~------------------- 240 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAE-------FHPNSCN------------------- 240 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEE-------ECSSCTT-------------------
T ss_pred CCEEEEe-CCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEE-------ECCCCCc-------------------
Confidence 9999998 79999999998543 2222 224555666665 66665 4
Q ss_pred ceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC------------CCEEEEEEeCCceEEEEEECCCCE
Q 002234 793 PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA------------NPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 793 v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~------------~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
.+++|+.||.|++||++++..... ....+.+|. ..|.+++|+|++.++++++. + .
T Consensus 241 ---------~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~-~ 307 (447)
T 3dw8_B 241 ---------TFVYSSSKGTIRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L-S 307 (447)
T ss_dssp ---------EEEEEETTSCEEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S-E
T ss_pred ---------EEEEEeCCCeEEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C-e
Confidence 489999999999999999886100 002334444 49999999999999999987 5 9
Q ss_pred EEEEECCC-CeeEEeecCCCc----------------EEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEec------
Q 002234 861 VKMWSTSN-YNMVGSLPTLSE----------------VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ------ 915 (949)
Q Consensus 861 I~iwd~~~-~~~~~~~~~~~~----------------v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~------ 915 (949)
|++||+++ ++++..+..+.. +..++|+|+ ++++|+.||.|++||+.+++.+....
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 387 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK 387 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence 99999997 888877774433 334999998 89999999999999999988653210
Q ss_pred -------------------------cccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 916 -------------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 916 -------------------------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
..+...|..++|+|++++|++++.++ +++|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 02344789999999999999998876 77775
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-29 Score=289.17 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=216.8
Q ss_pred ccccccccccEEEEecCCCCeEEEecC-Cceeee-cCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCC---Cc-eee
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVD-SSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRG---SI-LHL 702 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~-~~~~~~-~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t---~~-~~~ 702 (949)
.+..+.+++..+++++ .|+.. ..+..+ .+|.+.|++++|+| + +|++|+.||+|++||+.+ +. ...
T Consensus 31 ~~~~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GCGGGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred chhhcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 3445666777776654 38876 455566 88999999999999 6 999999999999999987 42 123
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG---NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~---~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
...+ +|.+.|++++|+|++++|++|+.||+|++||+. +++...... ...+..+. |+|++
T Consensus 105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~i~~~~-------~~~~~------- 166 (437)
T 3gre_A 105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN---CECIRKIN-------LKNFG------- 166 (437)
T ss_dssp SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE---EEEEEEEE-------GGGGS-------
T ss_pred eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc---cceeEEEE-------ccCcc-------
Confidence 3444 599999999999999999999999999999995 432111111 01344443 33321
Q ss_pred ecCeEEEecCCCCceEEEEe----CCEEEEEECCCcEEEEECCCCceeeeecccccccC--CCCCEEEEEEeCCceEEEE
Q 002234 780 RNGKTKLLNSSKYPKCLALV----QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG--KANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 780 ~~g~i~~~~~~~~v~~v~~~----~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s 853 (949)
+...+.++.+. +..+++|+.||.|++||+++++.... +.+ |...|++++|+|++.++++
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI------IENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE------EECCGGGCCEEEEEECTTSCEEEE
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE------EccCCCCCceEEEEECCCCCEEEE
Confidence 22334444433 34699999999999999999988743 344 7789999999999999999
Q ss_pred EECCCCEEEEEECCCCeeEEee--cCCCcEEEEEEcCC------EEEEEECCCeEEEEECCCCcEEEEeccc--------
Q 002234 854 TSLDGAAVKMWSTSNYNMVGSL--PTLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQIRIETLQTG-------- 917 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~d------~l~sgs~dg~I~vwd~~~~~~~~~l~~~-------- 917 (949)
++.|| +|++||+++++++..+ .+...|.+++++|. ++++|+.||.|++||+.+++.+..+...
T Consensus 232 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 232 GTTRG-IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp EETTS-CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred EcCCC-eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence 99997 9999999999999877 46778999977654 7999999999999999999988877521
Q ss_pred -----------------cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 918 -----------------TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 918 -----------------h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|...|++++|+ ++++|++|+.||.|++||+.
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 66679999999 78999999999999999974
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=6.1e-29 Score=271.47 Aligned_cols=255 Identities=15% Similarity=0.193 Sum_probs=199.8
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEEEecCCC
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~vWd~~t~ 698 (949)
|...+....+++++.+|++|+.|++|++||.. .....+.+|.++|++++|++ ++|+||+.||+|++||+.++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 34455567788899999999999999999985 35678899999999999975 39999999999999999988
Q ss_pred ceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCCEE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
....+..+.+|...|.+++|+|+ |++|++|+.||+|++||++++. ........|...|.++. |+|++..-
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~~ 160 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPATIEE 160 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE-------ECCCC---
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe-------ecCCcccc
Confidence 55567788899999999999997 8999999999999999998763 22233445677888887 66654210
Q ss_pred EEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc---eEEE
Q 002234 776 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL---VYTA 852 (949)
Q Consensus 776 ~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~ 852 (949)
. +. .........|++|+.|++|++||++++....... ..+.+|...|.+++|+|++ .+++
T Consensus 161 ~-----~~----------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~--~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 161 D-----GE----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp ------------------------CCEEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred c-----cc----------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE--EEecCCCCceEEEEECCCCCCceEEE
Confidence 0 00 0000012469999999999999998776321111 4577899999999999984 8999
Q ss_pred EEECCCCEEEEEECCCCe---eEEee---cCCCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 853 STSLDGAAVKMWSTSNYN---MVGSL---PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 853 s~s~Dg~~I~iwd~~~~~---~~~~~---~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
+++.|+ +|++||+.+.. ....+ .+...|.+++|+|+ ++++++.||+|++|+..
T Consensus 224 s~s~D~-~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCC-cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999997 99999998643 12222 25678999999998 79999999999999976
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.7e-28 Score=275.65 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=212.1
Q ss_pred eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 663 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
.+..|.++|++++|+|+ +|++|+.||+|++||+.+++...+..+.+|...|++++|+|++++|++++.||+|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 45569999999999997 9999999999999999998444889999999999999999999999999999999999998
Q ss_pred CCeeE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC
Q 002234 741 NEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 741 ~~~~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~ 819 (949)
+++.. ......+...+.++. |+|+++. +++|+.||.|++||+.+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------------------------l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVR-------WAPNEKK----------------------------FAVGSGSRVISICYFEQ 127 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEE-------ECTTSSE----------------------------EEEEETTSSEEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEE-------ECCCCCE----------------------------EEEEeCCCEEEEEEecC
Confidence 88633 333355677777776 7777764 88899999999999998
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC------------------CCCeeEEeec-CCCc
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST------------------SNYNMVGSLP-TLSE 880 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~------------------~~~~~~~~~~-~~~~ 880 (949)
+....... ....+|...|.+++|+|++.++++++.|| .|++||+ ..++.+..+. |...
T Consensus 128 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 128 ENDWWVCK--HIKKPIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp TTTEEEEE--EECTTCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred CCcceeee--eeecccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 77422111 23356889999999999999999999997 9999995 4677888886 7788
Q ss_pred EEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 881 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 881 v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.+++|+|+ ++++++.||.|++||+.+++.+..+. .|...|.+++|+|+++++++| .||.|++|++
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 999999998 89999999999999999999999994 888899999999999988887 8999999996
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.6e-29 Score=283.41 Aligned_cols=263 Identities=18% Similarity=0.200 Sum_probs=214.0
Q ss_pred EEEEecCCCCeEEEecCC------ceeeecCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCCCce-----eeeEEec
Q 002234 642 KVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSIL-----HLIQQIR 707 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~-----~~i~~l~ 707 (949)
.+++++.||.|+||+..+ ....+.+|.+.|++++|+| + +|++|+.||+|++||+.++.. .++..+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 344578999999999863 3446778999999999998 5 999999999999999998732 4677889
Q ss_pred ccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 708 EHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 708 ~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
+|...|++++|+|++ ++|++++.||+|++||+.+++...... ..|...|.++. |+|+|+.
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------- 190 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD-------WSRDGAL----------- 190 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE-------ECTTSSC-----------
T ss_pred CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE-------ECCCCCE-----------
Confidence 999999999999998 699999999999999999985322221 45677788877 7787764
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccc-cCCCCC-EEEEEEeCCceEEEEE---ECCCCE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKANP-VHALQVHNGLVYTAST---SLDGAA 860 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~-V~~l~~~~~~~~l~s~---s~Dg~~ 860 (949)
+++++.||.|++||+++++... .+ .+|... +..+.|+|++.+++++ +.|+ .
T Consensus 191 -----------------l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~-~ 246 (402)
T 2aq5_A 191 -----------------ICTSCRDKRVRVIEPRKGTVVA------EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER-Q 246 (402)
T ss_dssp -----------------EEEEETTSEEEEEETTTTEEEE------EEECSSCSSSCCEEEECSTTEEEEEEECTTCCE-E
T ss_pred -----------------EEEEecCCcEEEEeCCCCceee------eeccCCCCCcceEEEEcCCCcEEEEeccCCCCc-e
Confidence 8889999999999999988774 33 456655 8999999999999998 5675 9
Q ss_pred EEEEECCCCee---EEeecCCCcEEEEEEcCC--EEE-EEECCCeEEEEECCCCcE-EEEecc-ccccceeEEEEeCCCC
Q 002234 861 VKMWSTSNYNM---VGSLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWDQKRQIR-IETLQT-GTSGKVQCMALDDNEE 932 (949)
Q Consensus 861 I~iwd~~~~~~---~~~~~~~~~v~~l~~s~d--~l~-sgs~dg~I~vwd~~~~~~-~~~l~~-~h~~~I~~l~~spdg~ 932 (949)
|++||++++.. ...+.+...+.+++|+|+ +++ +|+.||.|++||+.+++. +..+.. .|.+.|.+++|+|++.
T Consensus 247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRG 326 (402)
T ss_dssp EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGG
T ss_pred EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccc
Confidence 99999998654 334457788999999998 565 566799999999999884 444421 2568999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 002234 933 FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 933 ~L~sgs~Dg~I~iWdl 948 (949)
++++ .|+.+++|++
T Consensus 327 ~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 327 LEVN--KCEIARFYKL 340 (402)
T ss_dssp SCGG--GTEEEEEEEE
T ss_pred ccee--cceeEEEEEc
Confidence 8764 5779999986
No 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=2e-28 Score=270.61 Aligned_cols=264 Identities=15% Similarity=0.215 Sum_probs=227.1
Q ss_pred CCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe-
Q 002234 667 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE- 743 (949)
Q Consensus 667 h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~- 743 (949)
|.++|.+++|+|| +++++..++.+..|+.... .......+|.+.|++++|+|+++++++++ ||+|++||+.+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc--cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 5678999999997 7878887777777766554 33344447999999999999999999999 9999999998764
Q ss_pred ---eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC--------------CCceEEEEeC--CEEE
Q 002234 744 ---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS--------------KYPKCLALVQ--GKVY 804 (949)
Q Consensus 744 ---~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~--------------~~v~~v~~~~--~~l~ 804 (949)
........+...+.++. |+|+++.++++..++.+++|+.. ..+.++.+++ ..++
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~-------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCK-------LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEE-------ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred eeeeecccccCCCCcEEEEE-------EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEE
Confidence 22333335778888887 99999999999999999999743 3477888875 4699
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEE
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAM 884 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l 884 (949)
+++.||.|++||+.+++.. ..+.+|...|.+++|+|++.++++++.|| .|++||+++++.+..+.+...+.++
T Consensus 158 ~~~~dg~v~~~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~v~~~ 230 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLV------RQFQGHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQHDFTSQIFSL 230 (337)
T ss_dssp EEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEE
T ss_pred EEeCCCcEEEEeCCCCcee------eeeecccCceEEEEECCCCCEEEEEecCC-cEEEEECCCCceEeeecCCCceEEE
Confidence 9999999999999998876 45567889999999999999999999997 9999999999999999999999999
Q ss_pred EEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 885 VVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 885 ~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+|+|+ .+++++.+|.|++||+.+++.. .+ ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSCEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCCeE-EE-cCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 99998 8999999999999999988764 44 4788999999999999999999999999999974
No 80
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=9.9e-28 Score=265.80 Aligned_cols=267 Identities=19% Similarity=0.249 Sum_probs=222.6
Q ss_pred HhhHhhhcccccccc-ccEEEEecCCCCeEEEecCC-------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEe
Q 002234 625 KGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 694 (949)
Q Consensus 625 ~~~~~~~~~~~~~~~-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd 694 (949)
++|...+....+.++ +.+|+|||.|++|++||+.+ ....+.+|.+.|.+++|+|+ +|++|+.||.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 455566666677766 67999999999999999862 35667899999999999997 999999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCC--
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-- 772 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g-- 772 (949)
.... ........+...+..+.+++++++|++|+.|+.+++||+............+...+..+. |++++
T Consensus 115 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~ 185 (340)
T 4aow_A 115 LTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR-------FSPNSSN 185 (340)
T ss_dssp TTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE-------ECSCSSS
T ss_pred eccc--ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE-------EccCCCC
Confidence 9998 677778889999999999999999999999999999999887655555556777888777 66654
Q ss_pred CEEEEEEecCeEEEec------------CCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 773 AGIKVHLRNGKTKLLN------------SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~------------~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
..+++++.++.+++|+ +...|.+++|++ ..+++|+.||.|++||+.+++.+..+. +...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------~~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-------GGDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-------CSSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-------CCce
Confidence 4677888899999987 346789999986 479999999999999999988774432 3368
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec----------CCCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP----------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~----------~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
|.++.|+|++.+++++ .|+ .|++||++++..+..+. |...|++++|+|| +|++|+.||.|+|||+.
T Consensus 259 v~~~~~~~~~~~~~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 259 INALCFSPNRYWLCAA-TGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEECSSSSEEEEE-ETT-EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEeeecCCCCceeecc-CCC-EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999998776655 465 99999999988776653 4678999999998 89999999999999999
Q ss_pred CCc
Q 002234 907 RQI 909 (949)
Q Consensus 907 ~~~ 909 (949)
+|+
T Consensus 337 tGt 339 (340)
T 4aow_A 337 IGT 339 (340)
T ss_dssp C--
T ss_pred CcC
Confidence 885
No 81
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=7.2e-28 Score=300.55 Aligned_cols=271 Identities=20% Similarity=0.293 Sum_probs=237.1
Q ss_pred ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 002234 660 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 737 (949)
Q Consensus 660 ~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vW 737 (949)
..+.+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++ ..+..+.+|.+.|++++|+|+|++|++|+.||+|++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45677899999999999997 9999999999999999999 7889999999999999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec-------------CCCCceEEEEeC---C
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-------------SSKYPKCLALVQ---G 801 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~-------------~~~~v~~v~~~~---~ 801 (949)
|+.+++ .......|.+.|.++. |+|+|+.+++++.++.+++|+ +...+.++.|++ .
T Consensus 83 ~~~~~~-~~~~~~~~~~~v~~~~-------~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 83 NYNTGE-KVVDFEAHPDYIRSIA-------VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEE-------ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred ECCCCc-EEEEEecCCCCEEEEE-------EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 999986 2333345788899888 999999999999999999997 345689999987 3
Q ss_pred EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC--CceEEEEEECCCCEEEEEECCCCeeEEeec-CC
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL 878 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~ 878 (949)
.+++++.||.|++||+.++....... ..|..++.+++|+| ++.++++++.|| .|++||+.+++.+..+. |.
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLT-----TGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEE-----CCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTTTEEEEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEe-----cCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCCCcEEEEEcCCC
Confidence 59999999999999998887663322 23448899999998 999999999886 99999999999998888 77
Q ss_pred CcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC--EEEEEeCCCcEEEEeC
Q 002234 879 SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 879 ~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~--~L~sgs~Dg~I~iWdl 948 (949)
..|.+++|+|+ ++++|+.||.|++||..+++.+..+. .|...|++++|+|+|. +++++ .|+.+.+|++
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASG-FDNGFTVLSL 300 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEc
Confidence 89999999998 79999999999999999999999994 7888999999999997 45555 4667888875
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-29 Score=285.36 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=196.6
Q ss_pred eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 663 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
....|.++|++++|+|+ +|++|+.||+|++||+.++....+..+.+|.+.|++++|+|++++|++++.||+|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 44557889999999996 9999999999999999988556788899999999999999999999999999999999999
Q ss_pred CCe-e-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC
Q 002234 741 NEE-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 741 ~~~-~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~ 818 (949)
+++ . .......+...|.++. |+|+++. +++|+.|+.|++||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------------------------l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVR-------WSPNEDK----------------------------FAVGSGARVISVCYFE 130 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEE-------CCTTSSC----------------------------CEEEESSSCEEECCC-
T ss_pred CCCceeeeeEecccCCceEEEE-------ECCCCCE----------------------------EEEEecCCeEEEEEEC
Confidence 874 1 2333445667777776 7777664 8889999999999999
Q ss_pred CCceeeeecccccccC-CCCCEEEEEEeCCceEEEEEECCCCEEEEEECC------------------CCeeEEeecCCC
Q 002234 819 TGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTS------------------NYNMVGSLPTLS 879 (949)
Q Consensus 819 ~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~------------------~~~~~~~~~~~~ 879 (949)
+++.... ...+.+ |...|++++|+|++.++++++.|+ +|++||+. .++++..+.|..
T Consensus 131 ~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (377)
T 3dwl_C 131 QENDWWV---SKHLKRPLRSTILSLDWHPNNVLLAAGCADR-KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG 206 (377)
T ss_dssp ----CCC---CEEECSSCCSCEEEEEECTTSSEEEEEESSS-CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS
T ss_pred Cccccee---eeEeecccCCCeEEEEEcCCCCEEEEEeCCC-EEEEEEEEecccCCCccccccccccchhhhhhcccCCc
Confidence 8863110 034455 899999999999999999999997 99999985 355666667788
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECCCCcE----EEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR----IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~----~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|.+++|+|+ ++++|+.||+|++||+.+++. +..+ .+|...|.+++|+|||++|++|+.|+.+ +|+.
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 9999999998 799999999999999999987 6777 4899999999999999999999877666 6654
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.1e-28 Score=272.14 Aligned_cols=264 Identities=14% Similarity=0.156 Sum_probs=197.3
Q ss_pred HHHHHhhHhhhccccccccccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEE
Q 002234 621 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKV 692 (949)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~v 692 (949)
...+..|...+....+++++.+|++|+.|++|++||..+ ....+.+|.+.|++++|++ ++|+||+.||+|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 334566777777888889999999999999999999863 3566889999999999975 39999999999999
Q ss_pred EecCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCe-eEE-EEeecCCCceeeeeeccceEEE
Q 002234 693 WTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHC-VQVHDIKDQIQNLAVSNSILCF 768 (949)
Q Consensus 693 Wd~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~-~~~-~~~~~~~~~v~~l~~~~~~~~f 768 (949)
||+.++.......+.+|...|++++|+|+ |.+|++|+.||+|++||+.++. ... .....|...+.++. |
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-------~ 158 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS-------W 158 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE-------E
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE-------E
Confidence 99998755577788899999999999997 8899999999999999998763 211 12234566777776 6
Q ss_pred EeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc
Q 002234 769 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 848 (949)
Q Consensus 769 sp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 848 (949)
+|++..- . +.++...- .......+++|+.|++|++||+..+..... ...+.+|..+|.+++|+|++
T Consensus 159 ~~~~~~~-------~--~~~~~~~~--~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~---~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 159 APAVVPG-------S--LIDHPSGQ--KPNYIKRFASGGCDNLIKLWKEEEDGQWKE---EQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp CCCCCC---------------CCSC--CCCCCCBEECCBTTSBCCEEEECTTSCEEE---EECCBCCSSCEEEEECCCCS
T ss_pred ccccCCc-------c--cccccccc--CccccceEEEecCCCeEEEEEeCCCCccce---eeecccCCCceEEEEecCCC
Confidence 6664210 0 00000000 000013589999999999999976532111 14577899999999999986
Q ss_pred ----eEEEEEECCCCEEEEEECCCCe----eEEee-cCCCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 849 ----VYTASTSLDGAAVKMWSTSNYN----MVGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 849 ----~~l~s~s~Dg~~I~iwd~~~~~----~~~~~-~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
.++++++.|+ +|++||+.+.. ....+ .|...|.+++|+|+ ++++|+.||+|++|+..
T Consensus 225 ~~~~~~las~s~D~-~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCSQDG-RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEETTC-EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCceEEEEcCCC-eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7899999997 99999987631 11222 26789999999998 89999999999999975
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=260.36 Aligned_cols=264 Identities=19% Similarity=0.240 Sum_probs=223.3
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc-eeeeE
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQ 704 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~-~~~i~ 704 (949)
.+....+ +++.++++++.||.|++||..+ .......|.+.|.+++|+|+ ++++|+.||.|++|++.... .+.+.
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 3444455 7888999999999999999874 46677889999999999996 99999999999999987542 25677
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCCEEEEEEecCe
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGK 783 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~~l~~~~~~g~ 783 (949)
.+.+|...|.++.| +++++++++.||+|++|| .++ .......+...+.++. |.| ++..+++++.++.
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~-~~~~~~~~~~~v~~~~-------~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS-LVYNLQAHNASVWDAK-------VVSFSENKFLTASADKT 166 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE-EEEEEECCSSCEEEEE-------EEETTTTEEEEEETTSC
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc-EEEecccCCCceeEEE-------EccCCCCEEEEEECCCC
Confidence 88899999999999 578999999999999999 332 3344445678888887 777 9999999999999
Q ss_pred EEEec-----------CCCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEE
Q 002234 784 TKLLN-----------SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 851 (949)
Q Consensus 784 i~~~~-----------~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 851 (949)
+++|+ +...+.++.+++ +.+++++.||.|++||+++++.. ..+.+|..+|++++|+|++ .+
T Consensus 167 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 167 IKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL------RTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEECTTS-CE
T ss_pred EEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh------hhhhcCCceEEEEEEecCC-CE
Confidence 99997 456788999875 67999999999999999999887 4566788999999999999 57
Q ss_pred EEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 852 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 852 ~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
++++.|| .|++||+.+++....+. +...+.+++|+|+ .+++++.||.|++||+++++.....
T Consensus 240 ~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 240 VSCGEDR-TVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEETTS-EEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEecCC-EEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 8888886 99999999999998887 6679999999999 6788999999999999988765544
No 85
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=6.3e-28 Score=276.30 Aligned_cols=264 Identities=13% Similarity=0.153 Sum_probs=219.7
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
..+++++|+|+ +|++|+.||+|++||+.++ .....+..| ..+....|+|++++|++|+.||+|++||+.+++ .
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~ 131 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--Q 131 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--E
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--e
Confidence 34557899996 9999999999999999988 566666666 455556789999999999999999999999874 3
Q ss_pred EEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------CCCceEEEEeC--CEEEEEECCCc
Q 002234 747 VQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGA 811 (949)
Q Consensus 747 ~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------~~~v~~v~~~~--~~l~sgs~Dg~ 811 (949)
... ..|...|.++. |+|+++.+++++.++.+++|+. ...|.++++++ ..+++|+.||.
T Consensus 132 ~~~~~~h~~~v~~~~-------~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 132 REIDQAHVSEITKLK-------FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 204 (420)
T ss_dssp EEETTSSSSCEEEEE-------ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eeecccccCccEEEE-------ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 333 46788999988 9999999999999999999983 45789999986 57999999999
Q ss_pred EEEEECCCCceeeeecccccccCCCCCE---------------------EEEEEeCCceEEEEEECCCCEEEEEECCCCe
Q 002234 812 IQEIDLATGTFATIQTGHRKLLGKANPV---------------------HALQVHNGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 812 I~iwd~~~~~~~~~~~~~~~~~~h~~~V---------------------~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
|++||+++++....+..+ ..|...+ .+++|+|++.++++++.|| .|++||+++++
T Consensus 205 v~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~ 280 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRK---ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-VITVHNVFSKE 280 (420)
T ss_dssp EEEEETTTTEEEEEECBT---TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-CEEEEETTTCC
T ss_pred EEEeECCCCceeEEeecC---CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-eEEEEECCCCc
Confidence 999999999887655432 1233444 4455578999999999997 99999999998
Q ss_pred eEEeec--CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCc-EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 871 MVGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 871 ~~~~~~--~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~-~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
....+. |...+.+++|+|+ ++++|+.||.|++||+.+++ ++..+..+|...|+++.| +++++|++++.||+|+
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 887776 5688999999998 79999999999999999875 467776557778888855 5788999999999999
Q ss_pred EEeCC
Q 002234 945 AWGLS 949 (949)
Q Consensus 945 iWdl~ 949 (949)
+||+.
T Consensus 360 iw~~~ 364 (420)
T 3vl1_A 360 LDIIS 364 (420)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 99963
No 86
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1.3e-27 Score=292.91 Aligned_cols=262 Identities=19% Similarity=0.280 Sum_probs=216.5
Q ss_pred hHhhhcccccccc-ccEEEEecCCCCeEEEecCC-------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC
Q 002234 627 LRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 627 ~~~~~~~~~~~~~-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~ 696 (949)
|...+....+.++ +..|++|+.|++|++|+... ....+.+|.+.|.+++|+|+ +|+||+.||+|+|||+.
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3334444455544 46899999999999999863 24567899999999999997 99999999999999999
Q ss_pred CCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe--ecCCCceeeeeeccceEEEEeCC--
Q 002234 697 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQG-- 772 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~fsp~g-- 772 (949)
++ ..+..+.+|.+.|.+++|+|++++|+|||.|++|++||+.......... ..|...|.++. |+|++
T Consensus 461 ~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~ 531 (694)
T 3dm0_A 461 AG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR-------FSPNTLQ 531 (694)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE-------ECSCSSS
T ss_pred CC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE-------EeCCCCc
Confidence 99 7889999999999999999999999999999999999987753222221 24667788887 88887
Q ss_pred CEEEEEEecCeEEEec------------CCCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 773 AGIKVHLRNGKTKLLN------------SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~------------~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
..+++++.|+.+++|+ |...|.++++++ ..+++|+.||+|++||+.+++.+.. +. +...
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~------~~-~~~~ 604 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS------LE-ANSV 604 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC------CB-CSSC
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE------ec-CCCc
Confidence 5799999999999997 356789999986 5699999999999999999987633 22 3468
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC--------------------CcEEEEEEcCC--EEEEEEC
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------------SEVRAMVVSSE--LVYLGCK 896 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~--------------------~~v~~l~~s~d--~l~sgs~ 896 (949)
|.+++|+|++.++++++ ++ .|++||+.++..+..+... ..+++++|+|| +|++|+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TT-EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEcCCCcEEEEEc-CC-CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 99999999999888876 43 7999999999888766421 13788999998 8999999
Q ss_pred CCeEEEEECC
Q 002234 897 GGTVEIWDQK 906 (949)
Q Consensus 897 dg~I~vwd~~ 906 (949)
||+|+|||+.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999985
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=4e-28 Score=271.55 Aligned_cols=246 Identities=13% Similarity=0.195 Sum_probs=204.7
Q ss_pred eeeecCCCCceEEEEEeC-----C-EEEEEeCCCcEEEEecCCCceeeeEEecc-----cCCCEEEEEEecC----CCEE
Q 002234 661 VHVDSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQIRE-----HTKAVTGLAILQS----GEML 725 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~-----d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~-----H~~~V~~v~fspd----g~~L 725 (949)
.....+|.++|++++|+| + .+++++.++.|++||+.++ ..+..+.. |...|++++|+|+ |++|
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 345669999999999997 2 6777777889999999977 45555543 5678999999998 6799
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE
Q 002234 726 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 804 (949)
Q Consensus 726 ~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~ 804 (949)
++|+.||+|++||+.+++. ......+...|.++. |+| ++. .++
T Consensus 89 ~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~-------~~~~~~~----------------------------~l~ 132 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQC-IKHYVGHGNAINELK-------FHPRDPN----------------------------LLL 132 (366)
T ss_dssp EEEETTCEEEEECTTTCCE-EEEEESCCSCEEEEE-------ECSSCTT----------------------------EEE
T ss_pred EEecCCCEEEEEEchhceE-eeeecCCCCcEEEEE-------ECCCCCC----------------------------EEE
Confidence 9999999999999998753 222334677787777 777 555 488
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--------
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------- 876 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-------- 876 (949)
+|+.||.|++||+.+++....+. .+.+|...|.+++|+|++.++++++.|| .|++||+++++....+.
T Consensus 133 s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDTLVAIFG---GVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC---STTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred EEeCCCeEEEEEeecCeEEEEec---ccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCC
Confidence 99999999999999988774331 2267899999999999999999999997 99999999876544332
Q ss_pred ---------------------CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcE--------------EEEeccccccc
Q 002234 877 ---------------------TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR--------------IETLQTGTSGK 921 (949)
Q Consensus 877 ---------------------~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~--------------~~~l~~~h~~~ 921 (949)
|...|.+++|+++++++++.||.|++||+.++.. +..+ .+|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 287 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCD 287 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCC
T ss_pred CCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCc
Confidence 7788999999988999999999999999987643 6666 478889
Q ss_pred eeEEEEeCC--CCEEEEEeCCCcEEEEeCC
Q 002234 922 VQCMALDDN--EEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 922 I~~l~~spd--g~~L~sgs~Dg~I~iWdl~ 949 (949)
|++++|+|+ +++|++|+.||.|++||+.
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 999999999 9999999999999999974
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.2e-27 Score=270.78 Aligned_cols=243 Identities=13% Similarity=0.142 Sum_probs=199.1
Q ss_pred eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEE
Q 002234 661 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARV 736 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~v 736 (949)
...+.+|.+.|++++|+|+ +|++|+.||+|++||+.++.........+|.+.|.+++|+| ++++|++++.||+|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 4466799999999999985 89999999999999999884344444457999999999999 7899999999999999
Q ss_pred EECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEE
Q 002234 737 WSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 815 (949)
Q Consensus 737 Wd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iw 815 (949)
||+.++........ .+...+.++. |+|+++. +++|+.||.|++|
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------------------------l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVD-------VSVSRQM----------------------------LATGDSTGRLLLL 190 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEE-------EETTTTE----------------------------EEEEETTSEEEEE
T ss_pred EECCCCceEEEeccCCCCCCeEEEE-------ECCCCCE----------------------------EEEECCCCCEEEE
Confidence 99997644333332 2345677766 7777764 8889999999999
Q ss_pred ECCCCceeeeecccccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCC----CeeEEeecCCCcEEEEEEcC-C
Q 002234 816 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSN----YNMVGSLPTLSEVRAMVVSS-E 889 (949)
Q Consensus 816 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~----~~~~~~~~~~~~v~~l~~s~-d 889 (949)
|+. ++.. ..+.+|...|.+++|+|++. ++++++.|+ .|++||+++ +..+..+.|...|.+++|+| +
T Consensus 191 d~~-~~~~------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 191 GLD-GHEI------FKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp ETT-SCEE------EEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTT
T ss_pred ECC-CCEE------EEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcccceEEEecCCCceEEEEEcCCC
Confidence 994 5554 45667899999999999998 899999986 999999998 67778788999999999999 6
Q ss_pred --EEEEEECCCeEEEEECCCCcEEEEeccccc-------c----------ceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 890 --LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-------G----------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 890 --~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~-------~----------~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++++++.||.|++||+.+++.+..+. +|. . .+..++|+|||++ +|+.||+|++||+.
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEE-ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccc-cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 89999999999999999988766663 332 2 3344667777766 77899999999973
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-27 Score=263.06 Aligned_cols=271 Identities=14% Similarity=0.135 Sum_probs=227.9
Q ss_pred hHhhhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceee
Q 002234 627 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 702 (949)
Q Consensus 627 ~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~ 702 (949)
|...+....+++++.+|++++.||.|++||.. .....+.+|.+.|++++|+|+ +|++++.||+|++||+.++ +.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~ 108 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--QC 108 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cE
Confidence 34445566778899999999999999999987 466778899999999999986 9999999999999999998 67
Q ss_pred eEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCee------------EEEEeecCCCceeeeeeccce
Q 002234 703 IQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEI------------HCVQVHDIKDQIQNLAVSNSI 765 (949)
Q Consensus 703 i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~~------------~~~~~~~~~~~v~~l~~~~~~ 765 (949)
+..+. |...|.+++|+|+++++++++.+ |.|++||+..+.. .....+.....+.++.
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 182 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG----- 182 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE-----
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE-----
Confidence 77776 89999999999999999999999 9999999977531 1111111122566665
Q ss_pred EEEEeCCCEEEEEEecCeEEEecCC-------------CCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~~-------------~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
|+|+++.++++..++.+.+|+.. ..|.++.+++ ..+++++.||.|++||+.+++....+.
T Consensus 183 --~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--- 257 (369)
T 3zwl_B 183 --WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--- 257 (369)
T ss_dssp --ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred --EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---
Confidence 99999999999999999999843 4578888875 469999999999999999998874432
Q ss_pred cccCCCCCEEEEEEeCCceEEEEEECCCC-------------EEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEE
Q 002234 831 KLLGKANPVHALQVHNGLVYTASTSLDGA-------------AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG 894 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~-------------~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sg 894 (949)
+..++..++|+|++.++++++.++. .+++||..+++.+..+. |...|.+++|+|+ ++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 5678999999999999999988753 79999999999998888 7889999999998 89999
Q ss_pred ECCCeEEEEECCCCcEEEEe
Q 002234 895 CKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 895 s~dg~I~vwd~~~~~~~~~l 914 (949)
+.||.|++||++++.....+
T Consensus 334 ~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp ETTSEEEEEEECHHHHTCCC
T ss_pred cCCCeEEEEECccccchhHH
Confidence 99999999999876544433
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=6.3e-27 Score=272.12 Aligned_cols=263 Identities=17% Similarity=0.270 Sum_probs=216.2
Q ss_pred ccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeC--C--EEEEEeCCCcEEEEecCCCcee------
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILH------ 701 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~--d--~lasgs~Dg~I~vWd~~t~~~~------ 701 (949)
..+.+++ .+++|+.||+|++||..+ ....+.+|.+.|.+++|++ + ++++|+.||+|++||+.++...
T Consensus 168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence 3344444 999999999999999874 5677889999999999984 3 8999999999999999876311
Q ss_pred ---------------eeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceE
Q 002234 702 ---------------LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 766 (949)
Q Consensus 702 ---------------~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 766 (949)
.+..+.+|...|.++ +++++++++|+.||+|++||+.+++. ......+...|.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~------ 317 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI------ 317 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE------
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE------
Confidence 256788999999887 57899999999999999999998852 223334667777776
Q ss_pred EEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC
Q 002234 767 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 846 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 846 (949)
|+|+++. +++|+.||.|++||+.+++.. ..+.+|...|.++.++
T Consensus 318 -~~~~~~~----------------------------l~sg~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~- 361 (464)
T 3v7d_B 318 -YDHERKR----------------------------CISASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLS- 361 (464)
T ss_dssp -EETTTTE----------------------------EEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEC-
T ss_pred -EcCCCCE----------------------------EEEEeCCCcEEEEECCCCcEE------EEEeCCCCcEEEEEEc-
Confidence 7777764 889999999999999999887 4567889999999998
Q ss_pred CceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeE
Q 002234 847 GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 924 (949)
Q Consensus 847 ~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~ 924 (949)
+.++++++.|| +|++||+.++.......+...+..++|+++ ++++|+ ||.|++||+.+++.+..+..+|.+.|++
T Consensus 362 -~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 362 -DKFLVSAAADG-SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS 438 (464)
T ss_dssp -SSEEEEEETTS-EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred -CCEEEEEeCCC-cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence 46889999997 999999999988887777777777788777 777777 8999999999999998865688999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEE
Q 002234 925 MALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 925 l~~spdg~~L~sgs~Dg~I~iW 946 (949)
++|+ ++.++++++.||.+.+|
T Consensus 439 v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 439 VNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEE-TTEEEEEEEETTEEEEE
T ss_pred EEec-CCEEEEEEEeCCeEEEE
Confidence 9997 34556666777766544
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=2.3e-27 Score=269.35 Aligned_cols=263 Identities=10% Similarity=0.102 Sum_probs=217.0
Q ss_pred ccccccEEEEecCCCCeEEEecCC--------ceeeecCCCCceEEEEEeCC---------EEEEEeCCCcEEEEecCCC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD---------KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~~s~d---------~lasgs~Dg~I~vWd~~t~ 698 (949)
+.+++.+|++++.||+|++||..+ ....+.+|...|++++|+|+ +|++++.||+|++||+.++
T Consensus 22 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~ 101 (397)
T 1sq9_A 22 VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 101 (397)
T ss_dssp EEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC
T ss_pred EEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC
Confidence 344558999999999999999873 46778899999999999964 7999999999999999988
Q ss_pred ceee-----eEEeccc-----CCCEEEEEEe----cCCCE-EEEEeCCCcEEEEECCC------Ce-eE-----EEEe--
Q 002234 699 ILHL-----IQQIREH-----TKAVTGLAIL----QSGEM-LYSGSLDKTARVWSIGN------EE-IH-----CVQV-- 749 (949)
Q Consensus 699 ~~~~-----i~~l~~H-----~~~V~~v~fs----pdg~~-L~Sgs~Dg~I~vWd~~~------~~-~~-----~~~~-- 749 (949)
.. +..+..| ...|++++|+ |++++ |++++.||.|++||+.+ ++ .. .+..
T Consensus 102 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (397)
T 1sq9_A 102 --DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 179 (397)
T ss_dssp --TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEE
T ss_pred --cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeee
Confidence 44 7888888 5999999999 99999 99999999999999988 43 22 2322
Q ss_pred ---ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC------------------CCCceEEEEeC--CEEEEE
Q 002234 750 ---HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------------SKYPKCLALVQ--GKVYCG 806 (949)
Q Consensus 750 ---~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~------------------~~~v~~v~~~~--~~l~sg 806 (949)
..+...+.++. |+|++ .++++..++.+++|+. ...+.++.+++ ..++++
T Consensus 180 ~~~~~~~~~i~~~~-------~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~ 251 (397)
T 1sq9_A 180 ESPMTPSQFATSVD-------ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 251 (397)
T ss_dssp CCSSSSCCCCCEEE-------ECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred ccccCCCCCceEEE-------ECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE
Confidence 34567788777 99999 9999999999999872 55688889875 579999
Q ss_pred ECC---CcEEEEECCCCceeeeecccc-------cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec
Q 002234 807 CQD---GAIQEIDLATGTFATIQTGHR-------KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 807 s~D---g~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
+.| |.|++||+.+++.+..+.... ....|...|.+++|+|++.++++++.|| .|++||+.+++.+..+.
T Consensus 252 ~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 252 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-KLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-EEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-eEEEEEcCCCceeEEEe
Confidence 999 999999999998774332200 0001889999999999999999999997 99999999999988887
Q ss_pred -------C---------------CCcEEEEEEcCC------------EEEEEECCCeEEEEECCCCc
Q 002234 877 -------T---------------LSEVRAMVVSSE------------LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 877 -------~---------------~~~v~~l~~s~d------------~l~sgs~dg~I~vwd~~~~~ 909 (949)
| ...|++++|+|+ ++++|+.||.|++||+.+|+
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 4 788999999998 69999999999999998764
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=7.9e-28 Score=268.37 Aligned_cols=276 Identities=11% Similarity=0.109 Sum_probs=213.5
Q ss_pred hhhccccccccccE-EEEecC---CCCeEEEecCCc--e-eeecCCCCceEEEEEeC-----CEEEEEeCCCcEEEEecC
Q 002234 629 ELRKYSPLAFEMVK-VLSNGH---DSSADFWNHREL--V-HVDSSENGKVLSIACFR-----DKIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 629 ~~~~~~~~~~~~~~-l~s~s~---dg~I~vWd~~~~--~-~~~~~h~~~V~~l~~s~-----d~lasgs~Dg~I~vWd~~ 696 (949)
..+....+.+++.. +++++. |+.|++||..+. . ....+|.+.|++++|+| ++|++|+.||+|++||+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 34445667777754 456665 999999998742 2 23347999999999998 379999999999999999
Q ss_pred CCceeeeEEecccCCCEEEEEE------ecCCCEEEEEeCCCcEEEEECCCCe--eEEEEeecC--CCceeeeeeccceE
Q 002234 697 GSILHLIQQIREHTKAVTGLAI------LQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDI--KDQIQNLAVSNSIL 766 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~f------spdg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~~~--~~~v~~l~~~~~~~ 766 (949)
++. ..+..+.+|.+.|.++.| +|++++|++++.||+|++||+.+++ ...+..+.. ...+.++.+..
T Consensus 99 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 174 (357)
T 3i2n_A 99 APE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN--- 174 (357)
T ss_dssp SCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC---
T ss_pred CCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe---
Confidence 882 278889999999999955 6789999999999999999999875 222222111 23666665332
Q ss_pred EEEeCCCEEEEEEecCeEEEecC-----------CCCceEEEEeC-----CEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 767 CFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g~i~~~~~-----------~~~v~~v~~~~-----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
+|+|+++.++++..++.+++|+. ...+.++.+++ +.+++|+.||.|++||++++.....+.. .
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~ 253 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS-V 253 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE-E
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee-e
Confidence 27899999999999999999984 46789999975 5799999999999999988765432211 1
Q ss_pred cccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCCC-------------------eeEEeec-CCCcEEEEEEcCC
Q 002234 831 KLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNY-------------------NMVGSLP-TLSEVRAMVVSSE 889 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~~-------------------~~~~~~~-~~~~v~~l~~s~d 889 (949)
.+.+|...|++++|+|++. ++++++.|| .|++||++++ +.+..+. |...|.+++|+|+
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 3348999999999999998 899999987 9999999754 3445555 7789999999998
Q ss_pred --EEE-EEECCCeEEEEECCCCcE
Q 002234 890 --LVY-LGCKGGTVEIWDQKRQIR 910 (949)
Q Consensus 890 --~l~-sgs~dg~I~vwd~~~~~~ 910 (949)
+++ +|+.||.|++||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 566 899999999999987654
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.1e-28 Score=268.71 Aligned_cols=262 Identities=9% Similarity=0.057 Sum_probs=202.4
Q ss_pred cccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecC---------CCceeeeEE
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGR---------GSILHLIQQ 705 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~---------t~~~~~i~~ 705 (949)
.+..++..+++|+.||+|++||..+......-..+.|.++.|+|+ +++++.|++|++|+.. ++ +.+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~--~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTN--KVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTC--CEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCc--ceeEE
Confidence 345688899999999999999987432222222577888889999 9999999999999766 33 33444
Q ss_pred ec-ccCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 706 IR-EHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 706 l~-~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
+. +|.+.|.+++|+| +++++++|+.||+|++||+++++........+...+.++. |+|+|..
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~-------~~pdg~~-------- 184 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV-------LHKDSLL-------- 184 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE-------ECTTSCE--------
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE-------ECCCCCE--------
Confidence 43 6778999999999 9999999999999999999998653333334455677766 8888764
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccC-CCCCEEEEEEeCCceEEEEEECCCCEE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAV 861 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~Dg~~I 861 (949)
+++|+.||.|++||+++++... ..+.+ |..+|++++|+|++.++++++ |+ .|
T Consensus 185 --------------------lasg~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v 237 (343)
T 3lrv_A 185 --------------------LALYSPDGILDVYNLSSPDQAS-----SRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TV 237 (343)
T ss_dssp --------------------EEEECTTSCEEEEESSCTTSCC-----EECCCCTTSCEEEEEECTTSSEEEEEE-SS-BE
T ss_pred --------------------EEEEcCCCEEEEEECCCCCCCc-----cEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eE
Confidence 8889999999999999988651 23444 899999999999999999999 65 99
Q ss_pred EEEECCCCeeEEeec----CCCcE--EEEEEcCC--EEEEEEC-CCeEEEEECCCCcEEEEeccccccceeEEEEeC---
Q 002234 862 KMWSTSNYNMVGSLP----TLSEV--RAMVVSSE--LVYLGCK-GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD--- 929 (949)
Q Consensus 862 ~iwd~~~~~~~~~~~----~~~~v--~~l~~s~d--~l~sgs~-dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp--- 929 (949)
++||+++++.+..+. +...+ .+++|+|+ ++++++. |+.|+||++.+....... .++..+.|+|
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTA 312 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----C
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCcccc
Confidence 999999987765554 12223 46999998 8888888 999999999766543332 4677888888
Q ss_pred CCCEEEEEeCCCcEEEE
Q 002234 930 NEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 930 dg~~L~sgs~Dg~I~iW 946 (949)
+++.+++++.||.+.++
T Consensus 313 ~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCCEEEEEEETTEEEEE
T ss_pred ccceeEEEecCCceEEE
Confidence 88899999999988876
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=295.89 Aligned_cols=248 Identities=16% Similarity=0.202 Sum_probs=205.6
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEE
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARV 736 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~v 736 (949)
..++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|+|+ +++|++|+.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3567899999999999996 899999999999999986555788899999999999999987 999999999999999
Q ss_pred EECCCCeeEEE-EeecCCCceeeeeeccceEEEEeC--CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEE
Q 002234 737 WSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 813 (949)
Q Consensus 737 Wd~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~fsp~--g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~ 813 (949)
||+.+++.... ....+...|.++. |+|+ |+ .+++|+.||.|+
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~-------~sp~~~~~----------------------------~l~sgs~dg~I~ 126 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------LLLVASSDGKVS 126 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEEE
T ss_pred EECCCCcccccccccCCCCCeEEEE-------ECCCCCCC----------------------------EEEEEeCCCcEE
Confidence 99999863333 3345677788777 7777 55 488999999999
Q ss_pred EEECCCCceeeeecccccccCCCCCEEEEEEeC-------------CceEEEEEECCCCEEEEEECCCC----eeEEeec
Q 002234 814 EIDLATGTFATIQTGHRKLLGKANPVHALQVHN-------------GLVYTASTSLDGAAVKMWSTSNY----NMVGSLP 876 (949)
Q Consensus 814 iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-------------~~~~l~s~s~Dg~~I~iwd~~~~----~~~~~~~ 876 (949)
+||+.++..... ..+.+|...|.++.|+| ++.++++++.|| .|++||++++ .....+.
T Consensus 127 vwdl~~~~~~~~----~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 127 VVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp EEECCSSSCCCC----EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS-CEEEEEEETTTTEEEEEEEEC
T ss_pred EEEeecCCCcce----eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCCcccceeeeeec
Confidence 999998754322 34567889999999999 589999999997 9999999876 4555565
Q ss_pred -CCCcEEEEEEcCC-----EEEEEECCCeEEEEECCCCc-----EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 877 -TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI-----RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 877 -~~~~v~~l~~s~d-----~l~sgs~dg~I~vwd~~~~~-----~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
|...|.+++|+|+ ++++|+.||.|++||+.+++ ..... .+|.+.|++++|+|+|+++++|+.||.|++
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 7889999999986 69999999999999998864 22222 358889999999999999999999999999
Q ss_pred EeCC
Q 002234 946 WGLS 949 (949)
Q Consensus 946 Wdl~ 949 (949)
||+.
T Consensus 281 wd~~ 284 (753)
T 3jro_A 281 WKEN 284 (753)
T ss_dssp CBCC
T ss_pred EecC
Confidence 9974
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=275.17 Aligned_cols=273 Identities=11% Similarity=0.154 Sum_probs=201.8
Q ss_pred cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc---------eeeeEEecccC------------CCEEEEEEecC
Q 002234 665 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI---------LHLIQQIREHT------------KAVTGLAILQS 721 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~---------~~~i~~l~~H~------------~~V~~v~fspd 721 (949)
..|.+.|++++|+|+ +|++|+.||+|+|||+.++. ......+.+|. +.|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 346899999999996 99999999999999998762 12578889998 88999999999
Q ss_pred C--CEEEEEeCCCcEEEEECCCCeeEEEEe--ecCCC------ceeeeeeccceEEEEeCCCEEEEEEecCeEEE--ecC
Q 002234 722 G--EMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKD------QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL--LNS 789 (949)
Q Consensus 722 g--~~L~Sgs~Dg~I~vWd~~~~~~~~~~~--~~~~~------~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~--~~~ 789 (949)
+ .+|++++.||+|++||+.++....... ..+.+ .+..+.+ ..+.+.+ . ... ....+. ..+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~-~-~~~--~~~~~~~~~~h 176 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRV----PVFRPMD-L-MVE--ASPRRIFANAH 176 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCC----CEEEEEE-E-EEE--EEEEEEECSCC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEe----ccccchh-e-eee--ccceEEeccCC
Confidence 8 899999999999999998754211100 00000 1111110 0122222 1 111 111122 247
Q ss_pred CCCceEEEEeC--CEEEEEECCCcEEEEECCC-Cceeeeec-ccccccCCCCCEEEEEEeCCc-eEEEEEECCCCEEEEE
Q 002234 790 SKYPKCLALVQ--GKVYCGCQDGAIQEIDLAT-GTFATIQT-GHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMW 864 (949)
Q Consensus 790 ~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~-~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~I~iw 864 (949)
...|.+++|++ ..+++| .||.|++||+.+ +....... ....+.+|...|++++|+|++ .++++++.|| .|++|
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~iw 254 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-TIRLC 254 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-CEEEE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-eEEEE
Confidence 78899999986 457777 899999999984 33332211 112467899999999999998 9999999997 99999
Q ss_pred ECCCCee----EEeecC-CC------------cEEEEEEcCC--EEEEEECCCeEEEEECCC-CcEEEEeccccccc---
Q 002234 865 STSNYNM----VGSLPT-LS------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKR-QIRIETLQTGTSGK--- 921 (949)
Q Consensus 865 d~~~~~~----~~~~~~-~~------------~v~~l~~s~d--~l~sgs~dg~I~vwd~~~-~~~~~~l~~~h~~~--- 921 (949)
|+++++. ...+.. .. .|.+++|+|+ ++++++. |.|++||+.+ ++++..+. +|...
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~ 332 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRSK 332 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTTT
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-cccccccc
Confidence 9999886 666763 33 8999999998 7888888 9999999997 88888884 66532
Q ss_pred ------------eeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 922 ------------VQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 922 ------------I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+..++|+|++++|++|+.||.|++||+.
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 2349999999999999999999999974
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=7.7e-28 Score=277.80 Aligned_cols=268 Identities=11% Similarity=0.097 Sum_probs=200.9
Q ss_pred cccccc-cccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeC-C--EEEEEeCCCcEEEEecCCCceeeeE
Q 002234 633 YSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQ 704 (949)
Q Consensus 633 ~~~~~~-~~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~i~ 704 (949)
...+.+ ++..|++|+.||+|+|||+.. ....+.+|.+.|++++|+| + +|+||+.||+|++||+.++......
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 203 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA 203 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence 344444 567899999999999999863 2344568999999999997 3 9999999999999999987333333
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC-EEEEEEecCe
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA-GIKVHLRNGK 783 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~-~l~~~~~~g~ 783 (949)
....+...+.+++|+|++++|++|+.||+|++||+++... .....|...|.++. |+|++. .+++++.|+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~--~~~~~h~~~v~~v~-------~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL--WNLRMHKKKVTHVA-------LNPCCDWFLATASVDQT 274 (435)
T ss_dssp CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC--CCSBCCSSCEEEEE-------ECTTCSSEEEEEETTSB
T ss_pred ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee--EEEecccceEEeee-------ecCCCceEEEEecCcce
Confidence 3334455788999999999999999999999999987532 23345678898887 999987 5678889999
Q ss_pred EEEecC---------------CCCceEEEEeC--CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC
Q 002234 784 TKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 846 (949)
Q Consensus 784 i~~~~~---------------~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 846 (949)
+++|+. ...|.+++|++ ..|++|+.||.|++||+.++........+.........+....|++
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 999973 34688999986 5799999999999999999887654433221111112233455666
Q ss_pred CceEEEEEE-----------CCCCEEEEEECCCCeeEEeec--CCCcEEEE-EEcCC--EEEEEECCCeEEEEECCCCcE
Q 002234 847 GLVYTASTS-----------LDGAAVKMWSTSNYNMVGSLP--TLSEVRAM-VVSSE--LVYLGCKGGTVEIWDQKRQIR 910 (949)
Q Consensus 847 ~~~~l~s~s-----------~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l-~~s~d--~l~sgs~dg~I~vwd~~~~~~ 910 (949)
++.++++++ .+++.|++||..+++.+..+. |...|.++ +|+|+ +|++|+ |++|+|||+++++.
T Consensus 355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 665555543 234589999999999988875 56778887 69998 666655 88999999998865
No 97
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.6e-27 Score=271.18 Aligned_cols=273 Identities=12% Similarity=0.119 Sum_probs=189.3
Q ss_pred cccccEEEEecCCCCeEEEecCC-----------ceeeecCCCCceEEEEEeC--------------------C--EEEE
Q 002234 637 AFEMVKVLSNGHDSSADFWNHRE-----------LVHVDSSENGKVLSIACFR--------------------D--KIFS 683 (949)
Q Consensus 637 ~~~~~~l~s~s~dg~I~vWd~~~-----------~~~~~~~h~~~V~~l~~s~--------------------d--~las 683 (949)
.++...+++.+.|+.|++|+... .......|..++..+.|++ + ++++
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las 106 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC 106 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence 33444556666788899997531 0011123444455555442 2 7999
Q ss_pred EeCCCcEEEEecCCCce---eeeEEecccCCCEEEEEEec--------CCCEEEEEeCCCcEEEEECCCCeeEEEEeecC
Q 002234 684 GHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQ--------SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI 752 (949)
Q Consensus 684 gs~Dg~I~vWd~~t~~~---~~i~~l~~H~~~V~~v~fsp--------dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~ 752 (949)
|+.|++|++||..++.. ..+..+.+|++.|++++|+| ||++|+|||.|++|+|||+.++. .......+
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~ 185 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPL 185 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEEC
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCC
Confidence 99999999999998732 23345789999999999998 78999999999999999998774 34445566
Q ss_pred CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccc---
Q 002234 753 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH--- 829 (949)
Q Consensus 753 ~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--- 829 (949)
..++.++. |+|++.. .+++|+.||+|++||+++++........
T Consensus 186 ~~~v~~v~-------~~p~~~~---------------------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 186 SSPGISVQ-------FRPSNPN---------------------------QLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp SSCEEEEE-------EETTEEE---------------------------EEEEEETTSEEEEEETTCCC----------C
T ss_pred CCCcEEEE-------ECCCCCc---------------------------eEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 77777776 7777643 3888999999999999887654322110
Q ss_pred ----------------ccccCCCCCEEEEEEe-CCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEE---------
Q 002234 830 ----------------RKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR--------- 882 (949)
Q Consensus 830 ----------------~~~~~h~~~V~~l~~~-~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~--------- 882 (949)
....+|...+.++.|+ +++..+++++.|+ ++++||+.+++....+. +...+.
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS-EEEEEEC-------------------CCSCSEE
T ss_pred ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC-CEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 1234688899999997 8999999999986 99999998876655443 222222
Q ss_pred ---------EEEEcC--C--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 883 ---------AMVVSS--E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 883 ---------~l~~s~--d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
...++| + ++++|+.||+|++||..+++....+. +|...|++++|||||++||+++.||. .+|.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~Gv-~lvr 386 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGSV-LLTR 386 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSEE-EEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCCe-EEEE
Confidence 223333 2 56778899999999999999888874 78889999999999999999998774 4444
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.2e-29 Score=290.41 Aligned_cols=235 Identities=12% Similarity=0.131 Sum_probs=179.7
Q ss_pred EEEEEeCCCcEEEEecCCCceee--eEEecccCCCEEEEEEecC------CCEEEEEeCCCcEEEEECCCCeeEEEEeec
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHL--IQQIREHTKAVTGLAILQS------GEMLYSGSLDKTARVWSIGNEEIHCVQVHD 751 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~--i~~l~~H~~~V~~v~fspd------g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~ 751 (949)
.+++++.||+|+|||+.+++... ..++.+|.+.|++++|+|+ +.+|++++.||+|++||+.++.........
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 67889999999999998874221 3456778999999999996 579999999999999999876311000000
Q ss_pred CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 752 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 752 ~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
...+. ..+-.+...|.+++|++ +.|++|+.||+|++||++++.... .
T Consensus 255 ~~~p~---------------------------~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~-----~ 302 (524)
T 2j04_B 255 CEKPS---------------------------LTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS-----F 302 (524)
T ss_dssp CCSCS---------------------------EEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCS-----E
T ss_pred ecCce---------------------------EEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCce-----E
Confidence 00000 11123456677777754 579999999999999999764321 3
Q ss_pred cccCCCCCEEEE--EEeCCc-eEEEEEECCCCEEEEEECCCCeeEEeec-CC--CcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 831 KLLGKANPVHAL--QVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TL--SEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 831 ~~~~h~~~V~~l--~~~~~~-~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~--~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
.+.+|..+|+++ .|++++ .++++++.|+ +|++||++++++..++. |. ..|.+++|+|+ .+++++.|++|++
T Consensus 303 ~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 303 YDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp EEECSSSCEEEEEEECCTTSCCEEEEEETTS-EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred EeecccccEEEEEEEcCCCCCeEEEEeccCC-eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 467899999999 467877 8999999997 99999999887766654 22 35889999997 7899999999999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
||++++.++.++. +|.+.|++++|||+|++|++|+.||+|++||+
T Consensus 382 wd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 382 VPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred EECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 9999999888884 89999999999999999999999999999986
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.1e-28 Score=275.02 Aligned_cols=261 Identities=11% Similarity=0.062 Sum_probs=204.9
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEeccc
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH 709 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H 709 (949)
-+....+++||+++++++.|++|+ |.... ....+|.+.|++++|+|+- .++++.+|+.+.. .+..+ .|
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~-~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~---~~~~~-~~ 84 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYA-KDINCNSKNLFHVKEFPLE-----FENKLDFELAQQN---GLLNS-QP 84 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCC-SCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSS---CSSTT-SC
T ss_pred cEEEEEECCCCCEEEEEcCCceee--ccccc-ceecCCCccEEEEEECCCC-----CcceEEEEeCCCc---eEeec-CC
Confidence 445677889999999999999999 75543 3447999999999999965 4555555544332 23333 56
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCC-----ceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD-----QIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
...|++++|+|||++|++++.||+|++||..+ .+....+.. .+.+++ |+|||+.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~sva-------fSPDG~~---------- 143 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFE-------WNPIESS---------- 143 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECCCSSCSTTTCEEEEE-------ECSSSSC----------
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeeccCCCccccccEEEEE-------EcCCCCE----------
Confidence 89999999999999999999999999999544 222222333 477776 9999986
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce-------eeeecccccccCCCCCEEEEEEeCCceEEEEEECC
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF-------ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 857 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~-------~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D 857 (949)
|++|+.||+|++||+.++.. +..+. ....+|...|.+++|+|++ +++++.|
T Consensus 144 ------------------LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--~~~~gh~~~V~sVawSPdg--Laass~D 201 (588)
T 2j04_A 144 ------------------IVVGNEDGELQFFSIRKNSENTPEFYFESSIR--LSDAGSKDWVTHIVWYEDV--LVAALSN 201 (588)
T ss_dssp ------------------EEEEETTSEEEEEECCCCTTTCCCCEEEEEEE--CSCTTCCCCEEEEEEETTE--EEEEETT
T ss_pred ------------------EEEEcCCCEEEEEECCCCccccccceeeeeee--cccccccccEEEEEEcCCc--EEEEeCC
Confidence 88999999999999998853 22211 1236788999999999999 6777777
Q ss_pred CCEEEEEECCCCee---EEeec--CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEE--eCC
Q 002234 858 GAAVKMWSTSNYNM---VGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DDN 930 (949)
Q Consensus 858 g~~I~iwd~~~~~~---~~~~~--~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~--spd 930 (949)
+ +|++||+.++.. ..++. |...|.+++|+...+++++ +++|++||..+++..... .+|.+.|++++| +||
T Consensus 202 ~-tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 202 N-SVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKE 278 (588)
T ss_dssp C-CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSS
T ss_pred C-eEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCC
Confidence 5 999999988773 34553 5678999999955888887 699999999988774444 379999999999 999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 002234 931 EEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 931 g~~L~sgs~Dg~I~iWdl~ 949 (949)
+..+++++.||+ ++|.++
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 999999999999 999863
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=5.8e-27 Score=270.00 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=201.5
Q ss_pred eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCC--------CceeeeEEecccCCCEEEEEEecCCC-EEEEEe
Q 002234 662 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG--------SILHLIQQIREHTKAVTGLAILQSGE-MLYSGS 729 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t--------~~~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs 729 (949)
....+|.+.|++++|+|+ ++++++.||+|++||+.+ +....+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999995 899999999999999986 22367888899999999999999988 999999
Q ss_pred CCCcEEEEECCCCee-----E-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEE
Q 002234 730 LDKTARVWSIGNEEI-----H-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 803 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~-----~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l 803 (949)
.||+|++||+.++.. . ......|...|.++. |+|++. ..+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~---------------------------~~l 247 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-------WHLLHE---------------------------SLF 247 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEE-------ECSSCT---------------------------TEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeE-------EeCCCC---------------------------CEE
Confidence 999999999988421 0 111223444455544 444322 248
Q ss_pred EEEECCCcEEEEECCCCc---eeeeecccccccCCCCCEEEEEEeCCce-EEEEEECCCCEEEEEECCC-CeeEEeec-C
Q 002234 804 YCGCQDGAIQEIDLATGT---FATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSN-YNMVGSLP-T 877 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~~~---~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~Dg~~I~iwd~~~-~~~~~~~~-~ 877 (949)
++++.||.|++||++++. .. ..+..|...|++++|+|++. ++++++.|| .|++||+++ ..++..+. |
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPS------HTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCS------EEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEECC
T ss_pred EEEeCCCeEEEEECCCCCCCcce------eEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCCCeEEeecC
Confidence 899999999999999873 32 34557889999999999886 688888886 999999998 55677776 7
Q ss_pred CCcEEEEEEcCC---EEEEEECCCeEEEEECCC--------------CcEEEEeccccccceeEEEEeCCCC-EEEEEeC
Q 002234 878 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR--------------QIRIETLQTGTSGKVQCMALDDNEE-FLVIGTS 939 (949)
Q Consensus 878 ~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~--------------~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs~ 939 (949)
...|.+++|+|+ .+++++.||.|+|||+.. .+.+..+ .+|.+.|++++|+|+++ +|++++.
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEEC
Confidence 889999999997 599999999999999987 3566666 58999999999999999 9999999
Q ss_pred CCcEEEEeCC
Q 002234 940 DGRIQAWGLS 949 (949)
Q Consensus 940 Dg~I~iWdl~ 949 (949)
||.|++|+++
T Consensus 400 dg~i~iw~~~ 409 (430)
T 2xyi_A 400 DNIMQVWQMA 409 (430)
T ss_dssp TSEEEEEEEC
T ss_pred CCCEEEeEcc
Confidence 9999999974
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=3.2e-26 Score=264.18 Aligned_cols=235 Identities=26% Similarity=0.427 Sum_probs=203.1
Q ss_pred eecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 002234 663 VDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 742 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~ 742 (949)
...+|...|+++.|.++++++|+.||+|++||+.++ +.+..+.+|.+.|++++| ++++|++|+.||+|++||+.++
T Consensus 128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 345678889999998889999999999999999999 788999999999999998 7899999999999999999987
Q ss_pred eeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce
Q 002234 743 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF 822 (949)
Q Consensus 743 ~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~ 822 (949)
+. ......| ...|.++.++++.+++|+.||.|++||+.++..
T Consensus 204 ~~-~~~~~~h-------------------------------------~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 204 EM-LNTLIHH-------------------------------------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp CE-EEEECCC-------------------------------------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSC
T ss_pred cE-EEEEcCC-------------------------------------CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC
Confidence 52 1111222 334455556666799999999999999998875
Q ss_pred eeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCCEEEEEECCCeEE
Q 002234 823 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVE 901 (949)
Q Consensus 823 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d~l~sgs~dg~I~ 901 (949)
.... ..+.+|...|.++++ ++.++++++.|| .|++||+++++.+..+. |...+.++.++++++++|+.||.|+
T Consensus 246 ~~~~---~~~~~~~~~v~~~~~--~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 246 ITLR---RVLVGHRAAVNVVDF--DDKYIVSASGDR-TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 319 (435)
T ss_dssp CEEE---EEECCCSSCEEEEEE--ETTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred ceee---eEecCCCCcEEEEEe--CCCEEEEEeCCC-eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 4221 345688999999999 567889999886 99999999999999888 7789999999999999999999999
Q ss_pred EEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 902 IWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 902 vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+||+.+++.+..+ .+|.+.|.+++| ++++|++|+.||+|++||+
T Consensus 320 iwd~~~~~~~~~~-~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 320 LWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEETTTCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EEECCCCCEEEEE-eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 9999999999999 489999999999 7899999999999999996
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=261.43 Aligned_cols=303 Identities=12% Similarity=0.122 Sum_probs=208.9
Q ss_pred hhhccccccc-cccEEEEecCCCCeEEEecCCc--eeee-------------cCCCCceEEEEEeC-C--EEEEEeCCCc
Q 002234 629 ELRKYSPLAF-EMVKVLSNGHDSSADFWNHREL--VHVD-------------SSENGKVLSIACFR-D--KIFSGHSDGT 689 (949)
Q Consensus 629 ~~~~~~~~~~-~~~~l~s~s~dg~I~vWd~~~~--~~~~-------------~~h~~~V~~l~~s~-d--~lasgs~Dg~ 689 (949)
..+....+.+ ++.++++++.||.|++||..+. .... .+|.+.|++++|+| + ++++++.||+
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 3444566777 8999999999999999998731 1111 35999999999998 4 8999999999
Q ss_pred EEEEecCCCceeeeEEecccCCCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceE
Q 002234 690 IKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 766 (949)
Q Consensus 690 I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd---g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 766 (949)
|++||+.++ +.+..+. |...+.++.|+|. +.++++++.||.|++||+.+++. ......+...|.++.
T Consensus 124 i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~------ 193 (408)
T 4a11_B 124 LKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVS------ 193 (408)
T ss_dssp EEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEE------
T ss_pred EEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEE------
Confidence 999999998 6666665 8889999999984 45999999999999999998752 223345678888888
Q ss_pred EEEeCCCE-EEEEEecCeEEEecC----------------------------CCCceEEEEeC--CEEEEEECCCcEEEE
Q 002234 767 CFIPQGAG-IKVHLRNGKTKLLNS----------------------------SKYPKCLALVQ--GKVYCGCQDGAIQEI 815 (949)
Q Consensus 767 ~fsp~g~~-l~~~~~~g~i~~~~~----------------------------~~~v~~v~~~~--~~l~sgs~Dg~I~iw 815 (949)
|+|+++. +++++.++.+++|+. ...|.++++++ ..+++++.||.|++|
T Consensus 194 -~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 194 -WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp -ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999995 889999999999974 24588999986 479999999999999
Q ss_pred ECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEE
Q 002234 816 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY 892 (949)
Q Consensus 816 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~ 892 (949)
|+.+++............................ ++.++.|+ .|++||+.+++.+..+. |...|.+++|+|+ +++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE-FVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC-EEEEEETT-EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCce-EEEEecCC-EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 9999886543322111111111222222233344 44445565 99999999999999998 7889999999998 799
Q ss_pred EEECCCeEEEEECCCCcEEEEeccccccceeEEEEeC-CCCEEEEEeCCCcEEEEeC
Q 002234 893 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 893 sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp-dg~~L~sgs~Dg~I~iWdl 948 (949)
+|+.||.|++||+.+++.+.... .+. ....+.| +...+.+++.||.+++|+.
T Consensus 351 s~~~dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEETTSCEEEEEECC------------------------------------------
T ss_pred EECCCCeEEEEeCCCCCccCCCC-ceE---eccccccccceeecccCccCceeecCC
Confidence 99999999999999998876653 221 1122333 3345567778999999985
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=3.8e-26 Score=256.04 Aligned_cols=272 Identities=12% Similarity=0.153 Sum_probs=200.4
Q ss_pred CceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEE-EEEeCCCcEE
Q 002234 659 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTAR 735 (949)
Q Consensus 659 ~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L-~Sgs~Dg~I~ 735 (949)
..+....+|.+.|++++|+|| +|++|+.|| +++||..++ ...... +...+..+.+.++++.+ ++++.|++|+
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 344456789999999999997 888887775 789999887 444433 22358888999988877 5677889999
Q ss_pred EEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCC----------ceEEEEeCCEEEE
Q 002234 736 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY----------PKCLALVQGKVYC 805 (949)
Q Consensus 736 vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~----------v~~v~~~~~~l~s 805 (949)
+||+.+++ .+....+...|.++. |++++ +++ ..++.+++|+.... ...+.++++.+++
T Consensus 85 iWd~~~~~--~~~~~~~~~~v~~v~-------~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~ 152 (355)
T 3vu4_A 85 IWDDVKKQ--DVSRIKVDAPVKDLF-------LSREF--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVY 152 (355)
T ss_dssp EEETTTTE--EEEEEECSSCEEEEE-------ECSSE--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEE
T ss_pred EEECCCCc--EEEEEECCCceEEEE-------EcCCE--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEE
Confidence 99999985 333444667888877 55443 333 35788999986544 2234455677666
Q ss_pred --EECCCcEEEEECCCCceeee---------ecc-cccccCCCCCEEEEEEeCCceEEEEEECCCCE-EEEEECCCCeeE
Q 002234 806 --GCQDGAIQEIDLATGTFATI---------QTG-HRKLLGKANPVHALQVHNGLVYTASTSLDGAA-VKMWSTSNYNMV 872 (949)
Q Consensus 806 --gs~Dg~I~iwd~~~~~~~~~---------~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~-I~iwd~~~~~~~ 872 (949)
|+.||.|++||+.++..... ..+ ...+.+|..+|++++|+|++.++++++.|+ + |++||+++++++
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~-~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG-TIIRVFKTEDGVLV 231 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC-SEEEEEETTTCCEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC-CEEEEEECCCCcEE
Confidence 58999999999998651100 000 256788999999999999999999999997 7 999999999999
Q ss_pred Eeec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcE--EEE--------------------eccccccceeEE
Q 002234 873 GSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR--IET--------------------LQTGTSGKVQCM 925 (949)
Q Consensus 873 ~~~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~--~~~--------------------l~~~h~~~I~~l 925 (949)
..+. |...|.+++|+|+ ++++|+.|++|++||+..+.. ... +...+......+
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 9997 7889999999998 899999999999999976531 111 111122234779
Q ss_pred EEeCCCCEEEEEeCCCcEEEEeC
Q 002234 926 ALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 926 ~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+|+|||+++++++.||.+++|++
T Consensus 312 a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 312 AWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEE
Confidence 99999999999999999999986
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-26 Score=259.28 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=202.5
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEEEecCC
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRG 697 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~vWd~~t 697 (949)
.|...+....+.+++.+|++++.||.|++||.. .....+.+|.+.|++++|++ ++|++|+.||+|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 344455566778899999999999999999986 34567789999999999984 4999999999999999999
Q ss_pred CceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 698 SILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 698 ~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
+....+..+.+|...|++++|+|+ +++|++++.||+|++||+.++. ........+...|.++. |+|....
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE-------ECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE-------EcCcccc
Confidence 855588889999999999999999 9999999999999999999874 23334456677788877 6653211
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC---ceEE
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYT 851 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l 851 (949)
..... .....+..+++|+.||.|++||++++....... ..+.+|..+|.+++|+|+ +.++
T Consensus 162 ~~~~~---------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 162 EDGEH---------------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp -----------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEE
T ss_pred ccccc---------------cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--EEEecccCcEeEEEECCCCCCCCeE
Confidence 00000 000012358999999999999998776432221 456789999999999999 8999
Q ss_pred EEEECCCCEEEEEECCCCe---eEEee---cCCCcEEEEEEcCC--EEEEEECCCeEEEEECCC
Q 002234 852 ASTSLDGAAVKMWSTSNYN---MVGSL---PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 852 ~s~s~Dg~~I~iwd~~~~~---~~~~~---~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~ 907 (949)
++++.|| .|++||+.++. ....+ .+...+.+++|+|+ ++++++.||.|++||+..
T Consensus 225 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 225 ASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCC-EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999997 99999998863 12222 26788999999998 799999999999999874
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=2.8e-26 Score=253.67 Aligned_cols=259 Identities=14% Similarity=0.196 Sum_probs=201.4
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCC------ceeeecCCCCceEEEEEeC---C-EEEEEeCCCcEEEEec
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKVWTG 695 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~~s~---d-~lasgs~Dg~I~vWd~ 695 (949)
+|...+....+.+++.+|++++.||.|++||..+ ....+.+|.+.|++++|+| + +|++|+.||+|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 3444556677788999999999999999999873 4556678999999999997 2 9999999999999999
Q ss_pred CCCce-------eeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceE
Q 002234 696 RGSIL-------HLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 766 (949)
Q Consensus 696 ~t~~~-------~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 766 (949)
.++.. ..+..+.+|.+.|.+++|+|+ ++++++++.||+|++||+.+++... .......+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~------ 160 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR--SWTLTSEMKVLS------ 160 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT--CCEEEEEEESCS------
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc--cccccccccccc------
Confidence 87632 457888899999999999999 9999999999999999998874110 000000011110
Q ss_pred EEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC-----CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEE
Q 002234 767 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 841 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~-----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 841 (949)
+.+. .+...+.++.+++ ..+++++.|+.+.+|+...+..... ..+.+|..+|++
T Consensus 161 -~~~~----------------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~ 219 (351)
T 3f3f_A 161 -IPPA----------------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA----AKLPGHKSLIRS 219 (351)
T ss_dssp -CCCS----------------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE----EECCCCCSCEEE
T ss_pred -cccC----------------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee----eecCCCCcceeE
Confidence 1111 1233455555543 4689999999998888887765322 456789999999
Q ss_pred EEEeCCc----eEEEEEECCCCEEEEEECCCC----------------------------------------------ee
Q 002234 842 LQVHNGL----VYTASTSLDGAAVKMWSTSNY----------------------------------------------NM 871 (949)
Q Consensus 842 l~~~~~~----~~l~s~s~Dg~~I~iwd~~~~----------------------------------------------~~ 871 (949)
++|+|++ .++++++.|| .|++||++++ +.
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDG-RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTS-CEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCC-eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 9999998 8999999997 9999999864 45
Q ss_pred EEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 872 VGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 872 ~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
+..+. |...|++++|+|+ ++++|+.||.|++||+.+++.+..+
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 55565 6789999999998 8999999999999999988765554
No 106
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-25 Score=256.74 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=196.5
Q ss_pred hccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 631 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
+....+.+++.+|++|+.||.|++||.. .....+.+|.+.|.+++|+++++++|+.||+|++||+.... ..+..+.+
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~ 215 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-HQIGTLQG 215 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEEC
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-ceeeEEcC
Confidence 4455667789999999999999999987 45677889999999999999999999999999999999432 67888899
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
|.+.|.+++|+|++++|++|+.||+|++||+.+++ .......+...|.++. |+|++..
T Consensus 216 ~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~-------~~p~~~~-------------- 273 (401)
T 4aez_A 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVA-------WCPWQSN-------------- 273 (401)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEE-------ECTTSTT--------------
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEE-------ECCCCCC--------------
Confidence 99999999999999999999999999999999875 2233345667777776 7777654
Q ss_pred CCCCceEEEEeCCEEEEEE--CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE--CCCCEEEEE
Q 002234 789 SSKYPKCLALVQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVKMW 864 (949)
Q Consensus 789 ~~~~v~~v~~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~Dg~~I~iw 864 (949)
.+++|+ .||.|++||+.+++....+ .+...|.+++|+|++.++++++ .|| .|++|
T Consensus 274 -------------ll~~~~gs~d~~i~i~d~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~dg-~i~v~ 332 (401)
T 4aez_A 274 -------------LLATGGGTMDKQIHFWNAATGARVNTV-------DAGSQVTSLIWSPHSKEIMSTHGFPDN-NLSIW 332 (401)
T ss_dssp -------------EEEEECCTTTCEEEEEETTTCCEEEEE-------ECSSCEEEEEECSSSSEEEEEECTTTC-EEEEE
T ss_pred -------------EEEEecCCCCCEEEEEECCCCCEEEEE-------eCCCcEEEEEECCCCCeEEEEeecCCC-cEEEE
Confidence 255654 7999999999999887443 2457899999999999999864 675 99999
Q ss_pred ECCCCeeEEee--c-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEE
Q 002234 865 STSNYNMVGSL--P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 926 (949)
Q Consensus 865 d~~~~~~~~~~--~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~ 926 (949)
|+.++...... . |...|.+++|+|+ ++++++.||.|++||+.+++.+......+.....++.
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------------------
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccCCCcccee
Confidence 99997665543 3 7789999999998 7999999999999999999877766433443444443
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=7.8e-25 Score=248.11 Aligned_cols=260 Identities=10% Similarity=0.116 Sum_probs=208.2
Q ss_pred ccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EE-EEEeCCCcEEEEecCCCceeeeEEecccCCCEE
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 714 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~l-asgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 714 (949)
+..+++++.|+.|++||..+ ....+..| ..+.+++|+|+ ++ ++++.|++|++||+.++ +.+..+..|. .+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEECCC-Ccc
Confidence 34688899999999999974 34445555 45899999997 44 77889999999999999 6777776555 899
Q ss_pred EEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCc
Q 002234 715 GLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 793 (949)
Q Consensus 715 ~v~fspdg~~L~-Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v 793 (949)
+++|+|+|++|+ +++.|++|++||+.+++. .........+.++. |+|+|+.+
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~-------~s~dg~~l------------------ 130 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVKTGKSPLGLA-------LSPDGKKL------------------ 130 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEECSSSEEEEE-------ECTTSSEE------------------
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeE--EEEEeCCCCcceEE-------ECCCCCEE------------------
Confidence 999999999875 555679999999999853 22333344555655 88888753
Q ss_pred eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEE-EEECCCCEEEEEECCCCeeE
Q 002234 794 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA-STSLDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 794 ~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~Dg~~I~iwd~~~~~~~ 872 (949)
+++++.|+.|++||+.+++....+ ..| ..+..++|+|++.+++ +++.+ +.|++||+++++..
T Consensus 131 ---------~~~~~~~~~v~~~d~~~~~~~~~~------~~~-~~~~~~~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 ---------YVTNNGDKTVSVINTVTKAVINTV------SVG-RSPKGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVI 193 (391)
T ss_dssp ---------EEEETTTTEEEEEETTTTEEEEEE------ECC-SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEE
T ss_pred ---------EEEeCCCCEEEEEECCCCcEEEEE------ecC-CCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCeEE
Confidence 367788999999999998876433 223 4679999999998774 55555 59999999999999
Q ss_pred EeecCCCcEEEEEEcCC--EEEEEE---CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEE-EEEeCCCcEEEE
Q 002234 873 GSLPTLSEVRAMVVSSE--LVYLGC---KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAW 946 (949)
Q Consensus 873 ~~~~~~~~v~~l~~s~d--~l~sgs---~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L-~sgs~Dg~I~iW 946 (949)
..+.+...+.+++|+|+ ++++++ .++.|++||+.+++.+..+. .|. .+.+++|+|||+++ ++++.||.|++|
T Consensus 194 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGP-DPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCC-CccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 98888889999999998 677776 68999999999999988885 444 58999999999987 677889999999
Q ss_pred eCC
Q 002234 947 GLS 949 (949)
Q Consensus 947 dl~ 949 (949)
|+.
T Consensus 272 d~~ 274 (391)
T 1l0q_A 272 DTA 274 (391)
T ss_dssp ETT
T ss_pred ECC
Confidence 974
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.5e-25 Score=254.68 Aligned_cols=274 Identities=12% Similarity=0.129 Sum_probs=216.6
Q ss_pred cccccccEEEEecCCCCeEEEecCC--cee-----eecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHRE--LVH-----VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~--~~~-----~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
.+.+++..+++++.|+.|++||..+ ... ...+|.+.|.+++|+++ ++++++.||+|++||+.++ +.+..
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~ 206 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKAT 206 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEE
Confidence 3445677888888999999999874 222 34589999999999885 8999999999999999998 78888
Q ss_pred ecccCCCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 706 IREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 706 l~~H~~~V~~v~fspdg~~L~-Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+..|...+.+++|+|+++.++ +++.|++|++||+.+++ ..........+.++. |+|+|+.++++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~-------~~~~g~~l~~~~~~~~- 276 (433)
T 3bws_A 207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDKIGLPRGLL-------LSKDGKELYIAQFSAS- 276 (433)
T ss_dssp EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCCCSEEEEEE-------ECTTSSEEEEEEEESC-
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecCCCCceEEE-------EcCCCCEEEEEECCCC-
Confidence 889999999999999999885 55579999999999884 333333344555555 8888876433321110
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEE-EEEECCCCEEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT-ASTSLDGAAVKM 863 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~Dg~~I~i 863 (949)
.+. +.||.|++||+.+++..... .|...+..++|+|++.++ ++++.|+ .|++
T Consensus 277 -----------------~~~--~~dg~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~-~v~v 329 (433)
T 3bws_A 277 -----------------NQE--SGGGRLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCS-KIEV 329 (433)
T ss_dssp -----------------TTC--SCCEEEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTT-EEEE
T ss_pred -----------------ccc--cCCCeEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCC-EEEE
Confidence 000 15889999999988765432 344578899999998655 5556665 9999
Q ss_pred EECCCCeeEEeecCCCcEEEEEEcCC--EEEEEEC---------------CCeEEEEECCCCcEEEEeccccccceeEEE
Q 002234 864 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---------------GGTVEIWDQKRQIRIETLQTGTSGKVQCMA 926 (949)
Q Consensus 864 wd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~---------------dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~ 926 (949)
||+.+++....+.+...+.+++|+|+ ++++++. ||.|++||..+++.+..+. . ...+.+++
T Consensus 330 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~-~~~~~~~~ 407 (433)
T 3bws_A 330 YDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A-GNQPTGLD 407 (433)
T ss_dssp EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-SSSEEEEE
T ss_pred EECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-CCCCceEE
Confidence 99999999999888889999999998 6777776 5799999999999998885 3 45799999
Q ss_pred EeCCCCEEEEEeC-CCcEEEEeCC
Q 002234 927 LDDNEEFLVIGTS-DGRIQAWGLS 949 (949)
Q Consensus 927 ~spdg~~L~sgs~-Dg~I~iWdl~ 949 (949)
|+|||++|++++. ||+|++|+++
T Consensus 408 ~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 408 VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEET
T ss_pred EcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999998875 9999999974
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.9e-25 Score=258.89 Aligned_cols=237 Identities=10% Similarity=0.059 Sum_probs=190.1
Q ss_pred CCCCceEEEEEeCC--E-EEEEeCCCcEEEEecC--CCceeeeEEec--ccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 666 SENGKVLSIACFRD--K-IFSGHSDGTIKVWTGR--GSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~-lasgs~Dg~I~vWd~~--t~~~~~i~~l~--~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
+|.+.|++++|+|+ + +++|+.||+|++||+. ++ ..+..+. .|...|++++|+|+|++|++|+.||.|++|+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34557999999997 6 4899999999999999 77 5666665 5779999999999999999999999999999
Q ss_pred CCCCeeEE---EEeecCCCceeeeeeccceEEEEeC---CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcE
Q 002234 739 IGNEEIHC---VQVHDIKDQIQNLAVSNSILCFIPQ---GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 812 (949)
Q Consensus 739 ~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~fsp~---g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I 812 (949)
+.++.... .....|...|.++. |+|+ ++ .+++|+.|+.|
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~-------~sp~~~~~~----------------------------~l~s~~~d~~i 222 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVH-------LIKDSDGHQ----------------------------FIITSDRDEHI 222 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEE-------EEECTTSCE----------------------------EEEEEETTSCE
T ss_pred cCCcccccccceeeecccCceEEEE-------EcCCCCCCc----------------------------EEEEEcCCCcE
Confidence 98864211 12234556677766 7777 54 38899999999
Q ss_pred EEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC---------------
Q 002234 813 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--------------- 877 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--------------- 877 (949)
++||+.++..... ...+|...|.+++|+ ++.++++++.|+ +|++||+.+++++..+..
T Consensus 223 ~vwd~~~~~~~~~-----~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (450)
T 2vdu_B 223 KISHYPQCFIVDK-----WLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP 295 (450)
T ss_dssp EEEEESCTTCEEE-----ECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred EEEECCCCceeee-----eecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence 9999999887632 245789999999999 999999999996 999999999998877752
Q ss_pred -----------CCcEEEEEEcCC--EEEEEE-CCCeEEEEEC--CCC---cEEEEeccccccceeEEEEeCCCCEEEEEe
Q 002234 878 -----------LSEVRAMVVSSE--LVYLGC-KGGTVEIWDQ--KRQ---IRIETLQTGTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 878 -----------~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~--~~~---~~~~~l~~~h~~~I~~l~~spdg~~L~sgs 938 (949)
...+.+++|+|+ ++++++ .++.|++||+ .++ +.+..+. +| +.|.+++|+|++.++++++
T Consensus 296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ---------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECC
T ss_pred ccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCcEEEEEec
Confidence 246899999988 788888 8999999999 555 6677774 56 7899999999654444333
Q ss_pred C------CCcEEEEeC
Q 002234 939 S------DGRIQAWGL 948 (949)
Q Consensus 939 ~------Dg~I~iWdl 948 (949)
. +..|.+|.+
T Consensus 374 ~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 374 KESSGVQKNFAKFIEY 389 (450)
T ss_dssp TTCCSSCCCSEEEEEE
T ss_pred ccCCCCCCcceEEEEE
Confidence 2 556888865
No 110
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=6.4e-25 Score=236.79 Aligned_cols=247 Identities=13% Similarity=0.102 Sum_probs=183.0
Q ss_pred EEEEEeCCCcEEEEecCCC-ceeeeEEecccCCC-------------------------EEEEEEecC----CCEEEEEe
Q 002234 680 KIFSGHSDGTIKVWTGRGS-ILHLIQQIREHTKA-------------------------VTGLAILQS----GEMLYSGS 729 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~-~~~~i~~l~~H~~~-------------------------V~~v~fspd----g~~L~Sgs 729 (949)
.++++++ .+|++|+..++ .++.++++..|+.+ |++++|+|| ++++++++
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 5666665 68999999876 45678888877754 556667778 88899988
Q ss_pred CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC-----CEEE
Q 002234 730 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GKVY 804 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~-----~~l~ 804 (949)
.+ +++|++.+++........|...|..+. |+|+|+.+... ..+...+..++|++ ..++
T Consensus 135 ~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~-------~s~dG~~~~s~--------~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 135 NI--KAVLGLTKRRLVSSSGTLSDQQVEVMT-------FAEDGGGKENQ--------FLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp EE--EEEEEETTTEEEEEESSSTTCEEEEEE-------ECTTSCEEEEE--------EECCCSSCEEEEEEEETSTTEEE
T ss_pred Ce--EEEEecCCCcEEEecccCCCCcEEEEE-------ECCCCceeeee--------ccCCCceeeEEeeccCCCCceEE
Confidence 54 889999887543333345788888877 88988876532 23455555555553 6799
Q ss_pred EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEE------------EEEECCCCEEEEEECCCCeeE
Q 002234 805 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT------------ASTSLDGAAVKMWSTSNYNMV 872 (949)
Q Consensus 805 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l------------~s~s~Dg~~I~iwd~~~~~~~ 872 (949)
+|+.|++|++||+.+|+++..+.++. .+...+.+++|+|++.++ ++++.|+ +|++||..+++.+
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~---~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~-tIklWd~~tgk~l 273 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDD---SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF-QLIVINPKTTLSV 273 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEETTEEEEEEC------------CCE-EEEEEETTTTEEE
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCC---cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc-EEEEEECCCCEEE
Confidence 99999999999999999885543211 123468888999999987 4566664 9999999999987
Q ss_pred Eee----c--CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEecccccccee-EEEEeCCCCEEEEEeCCCcEEE
Q 002234 873 GSL----P--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ-CMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 873 ~~~----~--~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~-~l~~spdg~~L~sgs~Dg~I~i 945 (949)
..+ + |...+.+..++...+++|+.|++|+|||+.+++++.++. +|.+.+. +++|||||++|++|+.|++|+|
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred EEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 765 2 334466666676689999999999999999999999995 7776555 6899999999999999999999
Q ss_pred EeCC
Q 002234 946 WGLS 949 (949)
Q Consensus 946 Wdl~ 949 (949)
||+.
T Consensus 353 Wd~~ 356 (356)
T 2w18_A 353 YHYS 356 (356)
T ss_dssp EEEC
T ss_pred ecCC
Confidence 9964
No 111
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=2.3e-25 Score=255.77 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=199.6
Q ss_pred hhccccccccccEEEEecCCCCeEEEecC--CceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
.+....+++++.+|++|+.||+|++||.. ..+..+.+|...|.++++++..+++|+.|+++++||..... ..+..+.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~ 227 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-HHVATLS 227 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccc-eeeEEec
Confidence 34566778899999999999999999998 45677889999999999999999999999999999998764 5678889
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee---EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+|...+..+.|+|+|+++++++.||.+++||..+++. .......+...|.++. |+|++..++.
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------~~p~~~~~la------- 293 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-------WCPWQSNVLA------- 293 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE-------ECTTCTTEEE-------
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee-------eCCCcccEEE-------
Confidence 9999999999999999999999999999999988641 1222334555666665 6665543211
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE--CCCCEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~Dg~~I~ 862 (949)
.++|+.|++|++||+.++.....+. +...+.++.|++++..+++++ .|+ .|+
T Consensus 294 ------------------~~~gs~D~~I~iwd~~t~~~~~~~~-------~~~~v~~~~~~~~~~~lv~~sg~~d~-~I~ 347 (420)
T 4gga_A 294 ------------------TGGGTSDRHIRIWNVCSGACLSAVD-------AHSQVCSILWSPHYKELISGHGFAQN-QLV 347 (420)
T ss_dssp ------------------EEECTTTCEEEEEETTTTEEEEEEE-------CSSCEEEEEEETTTTEEEEEECTTTC-CEE
T ss_pred ------------------EEeecCCCEEEEEeCCccccceeec-------cccceeeeeecCCCCeEEEEEecCCC-EEE
Confidence 2235689999999999998874332 235799999999888887765 454 999
Q ss_pred EEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEe
Q 002234 863 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 863 iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l 914 (949)
+||+.+++++.++. |...|++++|+|| +|++|+.||+|+|||+....+....
T Consensus 348 iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 99999999999998 7889999999998 8999999999999999877665555
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.1e-25 Score=256.69 Aligned_cols=239 Identities=18% Similarity=0.204 Sum_probs=191.9
Q ss_pred ceEEEEEeCC---EEEEEeCCCcEEEEecCCCce--eeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCe
Q 002234 670 KVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE 743 (949)
Q Consensus 670 ~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~--~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~ 743 (949)
....++++|+ ++++++.||.|+|||+.+... ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3446889997 445688999999999965411 24556789999999999999 99999999999999999999873
Q ss_pred e------EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 744 I------HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 744 ~------~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
. .......|...|.++. |+|++.. .+++|+.||.|++||+
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~---------------------------~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVA-------WHPTAQN---------------------------VLLSAGCDNVILVWDV 161 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEE-------ECSSBTT---------------------------EEEEEETTSCEEEEET
T ss_pred CccccCCceEEecCCCCeEEEEE-------ECcCCCC---------------------------EEEEEcCCCEEEEEEC
Confidence 1 1222234555666665 6666521 4889999999999999
Q ss_pred CCCceeeeecccccc--cCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEee-c-CCCc-EEEEEEcCC--E
Q 002234 818 ATGTFATIQTGHRKL--LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL-P-TLSE-VRAMVVSSE--L 890 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~-~-~~~~-v~~l~~s~d--~ 890 (949)
.+++... .+ .+|...|.+++|+|++.++++++.|| .|++||+++++.+..+ . |... +.++.|+|+ +
T Consensus 162 ~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 162 GTGAAVL------TLGPDVHPDTIYSVDWSRDGALICTSCRDK-RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp TTTEEEE------EECTTTCCSCEEEEEECTTSSCEEEEETTS-EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred CCCCccE------EEecCCCCCceEEEEECCCCCEEEEEecCC-cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 9998773 44 67889999999999999999999997 9999999999999888 4 4444 899999998 6
Q ss_pred EEEE---ECCCeEEEEECCCCcE-EEEeccccccceeEEEEeCCCCEEEE-EeCCCcEEEEeCC
Q 002234 891 VYLG---CKGGTVEIWDQKRQIR-IETLQTGTSGKVQCMALDDNEEFLVI-GTSDGRIQAWGLS 949 (949)
Q Consensus 891 l~sg---s~dg~I~vwd~~~~~~-~~~l~~~h~~~I~~l~~spdg~~L~s-gs~Dg~I~iWdl~ 949 (949)
+++| +.|+.|++||+.+++. +......|...|.+++|+||+++|++ |+.||.|++||+.
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 7777 6899999999998764 33443357778999999999999975 5579999999974
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.1e-25 Score=253.25 Aligned_cols=223 Identities=9% Similarity=0.094 Sum_probs=174.2
Q ss_pred EEecCCCCeEEEecCCc---ee--------eecCCCCceEEEEEeCC--EEE--EEeCCCcEEEEecCCCceeeeEEecc
Q 002234 644 LSNGHDSSADFWNHREL---VH--------VDSSENGKVLSIACFRD--KIF--SGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 644 ~s~s~dg~I~vWd~~~~---~~--------~~~~h~~~V~~l~~s~d--~la--sgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
++++.|+.+|+|+.... .. ....+...+.+++|||| +++ +++.|++|+|||+.++ +++..+.
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--~~~~~~~- 174 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--TEKFEIE- 174 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--EEEEEEE-
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--cEEEEeC-
Confidence 34566889999987521 11 12235567999999997 544 5568999999999999 7777775
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE-EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEe
Q 002234 709 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 787 (949)
Q Consensus 709 H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~ 787 (949)
|.+.|++++|+|||+++++++.|+ +++|+..++... ......+...|.++. |+|+|+.
T Consensus 175 ~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~-------fspdg~~------------- 233 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKIN-------FIADDTV------------- 233 (365)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEE-------EEETTEE-------------
T ss_pred CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEE-------EcCCCCE-------------
Confidence 888999999999999999998665 666666666432 233345667777777 9999886
Q ss_pred cCCCCceEEEEeCCEEEEEECCC----cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 788 NSSKYPKCLALVQGKVYCGCQDG----AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+++++.|+ .++.||+..+....... ..+.+|..+|++++|+|++.++++++.|+ +|+|
T Consensus 234 ---------------l~~~s~d~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~V~~~~~Spdg~~lasgs~D~-~V~i 295 (365)
T 4h5i_A 234 ---------------LIAASLKKGKGIVLTKISIKSGNTSVLRS--KQVTNRFKGITSMDVDMKGELAVLASNDN-SIAL 295 (365)
T ss_dssp ---------------EEEEEESSSCCEEEEEEEEETTEEEEEEE--EEEESSCSCEEEEEECTTSCEEEEEETTS-CEEE
T ss_pred ---------------EEEEecCCcceeEEeecccccceecceee--eeecCCCCCeEeEEECCCCCceEEEcCCC-EEEE
Confidence 45555555 57888887765432221 45678999999999999999999999997 9999
Q ss_pred EECCCCeeEEeec--CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC
Q 002234 864 WSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 864 wd~~~~~~~~~~~--~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~ 908 (949)
||+.+++++.++. |...|++++|+|| +|++||.|++|+|||+...
T Consensus 296 wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999998864 7899999999999 8999999999999998643
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=2.8e-25 Score=248.35 Aligned_cols=264 Identities=14% Similarity=0.163 Sum_probs=205.2
Q ss_pred hHhhhcccccccc---ccEEEEecCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC
Q 002234 627 LRELRKYSPLAFE---MVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 697 (949)
Q Consensus 627 ~~~~~~~~~~~~~---~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t 697 (949)
|...+....+.++ |.+|++++.||.|++||..+ ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 3444556667776 69999999999999999873 22677889999999999996 999999999999999999
Q ss_pred CceeeeEEecccCCCEEEEEE--ecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEE
Q 002234 698 SILHLIQQIREHTKAVTGLAI--LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 698 ~~~~~i~~l~~H~~~V~~v~f--spdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
+ +.+. +.+|...|++++| +|++++|++++.||+|++||+++++.. ........+.+ +.+.+..+
T Consensus 118 ~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~---------~~~~~~~~ 183 (368)
T 3mmy_A 118 N--QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM--MVLQLPERCYC---------ADVIYPMA 183 (368)
T ss_dssp T--EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS--EEEECSSCEEE---------EEEETTEE
T ss_pred C--Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE--EEEecCCCceE---------EEecCCee
Confidence 8 4444 5679999999999 889999999999999999999987522 22222233333 45556688
Q ss_pred EEEEecCeEEEecCCC--------------CceEEEEe--C----CEEEEEECCCcEEEEECCCCce---eeeecccc--
Q 002234 776 KVHLRNGKTKLLNSSK--------------YPKCLALV--Q----GKVYCGCQDGAIQEIDLATGTF---ATIQTGHR-- 830 (949)
Q Consensus 776 ~~~~~~g~i~~~~~~~--------------~v~~v~~~--~----~~l~sgs~Dg~I~iwd~~~~~~---~~~~~~~~-- 830 (949)
+++..++.+.+|+... .+.++.+. . ..+++|+.||.|++||+..... ...+..+.
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 8888899999987543 23444443 2 2399999999999999998742 32222111
Q ss_pred ----cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEE
Q 002234 831 ----KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 903 (949)
Q Consensus 831 ----~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vw 903 (949)
...+|..+|++++|+|++.++++++.|| .|++||+.+++++..+. |...|.+++|+|+ ++++|+.|+..+.|
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCC-eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 1122233799999999999999999997 99999999999999988 6889999999998 79999988755555
Q ss_pred EC
Q 002234 904 DQ 905 (949)
Q Consensus 904 d~ 905 (949)
++
T Consensus 343 ~~ 344 (368)
T 3mmy_A 343 EF 344 (368)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-24 Score=252.67 Aligned_cols=241 Identities=11% Similarity=0.121 Sum_probs=192.2
Q ss_pred CceEEEEEeCC-EEEEEeCCCcEEEEecCCCc-eeeeEEec---------------------------------------
Q 002234 669 GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSI-LHLIQQIR--------------------------------------- 707 (949)
Q Consensus 669 ~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~-~~~i~~l~--------------------------------------- 707 (949)
.++.+++|+++ .++.++.++.|++||+.+++ ...+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46778888886 34444457788888888773 00344433
Q ss_pred ---------------ccCCCEEEEEEecCCCEE-EEEeCCCcEEEEECC--CCe-eEEEEeecCCCceeeeeeccceEEE
Q 002234 708 ---------------EHTKAVTGLAILQSGEML-YSGSLDKTARVWSIG--NEE-IHCVQVHDIKDQIQNLAVSNSILCF 768 (949)
Q Consensus 708 ---------------~H~~~V~~v~fspdg~~L-~Sgs~Dg~I~vWd~~--~~~-~~~~~~~~~~~~v~~l~~~~~~~~f 768 (949)
+|.+.|++++|+|+|++| ++|+.||+|++||+. +++ ...+..+.+...|.++. |
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~ 157 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS-------I 157 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE-------E
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE-------E
Confidence 344579999999999996 899999999999998 664 33333345566777776 7
Q ss_pred EeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC-
Q 002234 769 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG- 847 (949)
Q Consensus 769 sp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~- 847 (949)
+|+|+. +++|+.||.|++||+.++..... ....+.+|...|++++|+|+
T Consensus 158 sp~~~~----------------------------l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 158 AEDDTT----------------------------VIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDS 207 (450)
T ss_dssp CTTSSE----------------------------EEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECT
T ss_pred cCCCCE----------------------------EEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCC
Confidence 887764 78889999999999988775420 01256789999999999999
Q ss_pred --ceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccc----
Q 002234 848 --LVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG---- 917 (949)
Q Consensus 848 --~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~---- 917 (949)
+.++++++.|+ +|++||+.+++.+..+. |...|.+++|+ + ++++|+.|++|++||+.+++.+..+..+
T Consensus 208 ~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 285 (450)
T 2vdu_B 208 DGHQFIITSDRDE-HIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK 285 (450)
T ss_dssp TSCEEEEEEETTS-CEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred CCCcEEEEEcCCC-cEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence 99999999996 99999999998887743 78899999998 6 8999999999999999999988888522
Q ss_pred --------------------cccceeEEEEeCCCCEEEEEe-CCCcEEEEeC
Q 002234 918 --------------------TSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 918 --------------------h~~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl 948 (949)
+...|.+++|+|++++|++++ .|+.|++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 234689999999999999999 8999999997
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.93 E-value=9.2e-25 Score=242.24 Aligned_cols=260 Identities=13% Similarity=0.133 Sum_probs=210.2
Q ss_pred hhhccccccccccEEEEecCCCCeEEEecCC-c----eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEec-CCCc
Q 002234 629 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-L----VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG-RGSI 699 (949)
Q Consensus 629 ~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~-~----~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~-~t~~ 699 (949)
..+....+.+++.++++++.|+.|++|+..+ . .....+|.+.|++++|+|+ +|++|+.||+|++||+ .++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~- 90 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP- 90 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-
Confidence 3445566777899999999999999999873 2 4566689999999999974 7999999999999999 887
Q ss_pred eeeeEEecc--cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---------CeeEEEEeecCCCceeeeeeccceEEE
Q 002234 700 LHLIQQIRE--HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---------EEIHCVQVHDIKDQIQNLAVSNSILCF 768 (949)
Q Consensus 700 ~~~i~~l~~--H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~---------~~~~~~~~~~~~~~v~~l~~~~~~~~f 768 (949)
....+.+ |...|++++|+| ++++++++.||+|++||+++ ++ ......+...+.++. |
T Consensus 91 --~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~-------~ 158 (342)
T 1yfq_A 91 --SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKIFTMD-------T 158 (342)
T ss_dssp --SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCEEEEE-------E
T ss_pred --ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC--eeeEEeeCCceEEEE-------e
Confidence 3477788 999999999999 99999999999999999886 42 233334677788877 7
Q ss_pred EeCCCEEEEEEecCeEEEecCCC---------------CceEEEEeC---CEEEEEECCCcEEEEECCCC------ceee
Q 002234 769 IPQGAGIKVHLRNGKTKLLNSSK---------------YPKCLALVQ---GKVYCGCQDGAIQEIDLATG------TFAT 824 (949)
Q Consensus 769 sp~g~~l~~~~~~g~i~~~~~~~---------------~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~------~~~~ 824 (949)
+|++ ++++..++.+++|+... .+.++.+++ ..+++|+.||.|++||+..+ ....
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 7776 88889999999998543 477888876 56999999999999999876 4443
Q ss_pred eeccccc---ccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-C-CCcEEEEEEcCCEEEEEECCCe
Q 002234 825 IQTGHRK---LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T-LSEVRAMVVSSELVYLGCKGGT 899 (949)
Q Consensus 825 ~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~-~~~v~~l~~s~d~l~sgs~dg~ 899 (949)
.+..+.. -.+|..+|.+++|+|++.++++++.|| .|++||+.+++.+..+. | ...|.+++...+++++|+.||+
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCc-eEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCc
Confidence 3322211 012345999999999999999999997 99999999999999988 5 7889999922238999999998
Q ss_pred -EEEEE
Q 002234 900 -VEIWD 904 (949)
Q Consensus 900 -I~vwd 904 (949)
.+.|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 55555
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-25 Score=275.67 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=204.6
Q ss_pred HHHhhHhhhccccccccccEEEEecCCCCeEEEecC----CceeeecCCCCceEEEEEeC----CEEEEEeCCCcEEEEe
Q 002234 623 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWT 694 (949)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~~s~----d~lasgs~Dg~I~vWd 694 (949)
.+++|...+....+++++.++++|+.||+|++||.. .....+.+|.++|++++|+| ++|++|+.||+|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 345666667777888899999999999999999986 35667889999999999985 3899999999999999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeC
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQ 771 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspd--g~~L~Sgs~Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~ 771 (949)
+.++....+..+.+|...|++++|+|+ ++++++|+.||+|++||+.++. ........+...|.++. |+|.
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~-------~~p~ 156 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPA 156 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE-------ECCC
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE-------ecCc
Confidence 999855588889999999999999999 9999999999999999998873 23334455677788777 5553
Q ss_pred CCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC---c
Q 002234 772 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---L 848 (949)
Q Consensus 772 g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~ 848 (949)
..... +. ......+..+++|+.||.|++||++++....... ..+.+|..+|++++|+|+ +
T Consensus 157 ~~~~~-----~~----------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 157 TIEED-----GE----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp C------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSS
T ss_pred ccccc-----cc----------cccCCCCCEEEEEECCCeEEEEeccCCcccceee--eeecCCCCcEEEEEeccCCCCC
Confidence 11000 00 0000012358999999999999998875432211 456789999999999999 9
Q ss_pred eEEEEEECCCCEEEEEECCCCee-----EEe-ecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc
Q 002234 849 VYTASTSLDGAAVKMWSTSNYNM-----VGS-LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 849 ~~l~s~s~Dg~~I~iwd~~~~~~-----~~~-~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~ 909 (949)
.++++++.|| .|++||+.++.. ... ..+...|++++|+|+ ++++|+.||.|++||+.++.
T Consensus 220 ~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 220 SYLASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEEESSS-CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CEEEEEecCC-EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999997 999999988641 111 226788999999998 89999999999999998644
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-25 Score=247.14 Aligned_cols=221 Identities=13% Similarity=0.111 Sum_probs=171.4
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------eeEEEEe
Q 002234 679 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE---------EIHCVQV 749 (949)
Q Consensus 679 d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~---------~~~~~~~ 749 (949)
+++++|+.||+|++||+.++ +.+..+. ...|.++.|+|+ +++++.|++|++|+.... +......
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 38999999999999999998 6666665 567888999988 999999999999987642 1111111
Q ss_pred ecCCCceeeeeeccceEEEEe--CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeec
Q 002234 750 HDIKDQIQNLAVSNSILCFIP--QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 827 (949)
Q Consensus 750 ~~~~~~v~~l~~~~~~~~fsp--~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 827 (949)
..+.++|.++. |+| +++ .+++|+.||+|++||+.+++......
T Consensus 122 ~~~~~~v~~~~-------~~~~~~~~----------------------------~l~s~s~dg~i~~wd~~~~~~~~~~~ 166 (343)
T 3lrv_A 122 VDSANEIIYMY-------GHNEVNTE----------------------------YFIWADNRGTIGFQSYEDDSQYIVHS 166 (343)
T ss_dssp CCCSSCEEEEE-------CCC---CC----------------------------EEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred cCCCCCEEEEE-------cCCCCCCC----------------------------EEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 22334444444 444 433 48899999999999999998864322
Q ss_pred ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeE-Eeec--CCCcEEEEEEcCC--EEEEEECCCeEEE
Q 002234 828 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEI 902 (949)
Q Consensus 828 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~-~~~~--~~~~v~~l~~s~d--~l~sgs~dg~I~v 902 (949)
..|...+++++|+|++.++++++.|| .|++||+++++.. ..+. |...|.+++|+|+ ++++++ +++|++
T Consensus 167 -----~~~~~~i~~~~~~pdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 167 -----AKSDVEYSSGVLHKDSLLLALYSPDG-ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVC 239 (343)
T ss_dssp -----CCSSCCCCEEEECTTSCEEEEECTTS-CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEE
T ss_pred -----cCCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEE
Confidence 23556799999999999999999997 9999999999877 5665 6889999999998 788888 559999
Q ss_pred EECCCCcEEEEecc--cccccee--EEEEeCCCCEEEEEeC-CCcEEEEeC
Q 002234 903 WDQKRQIRIETLQT--GTSGKVQ--CMALDDNEEFLVIGTS-DGRIQAWGL 948 (949)
Q Consensus 903 wd~~~~~~~~~l~~--~h~~~I~--~l~~spdg~~L~sgs~-Dg~I~iWdl 948 (949)
||+++++.+..+.. .|...+. +++|+|+|++|++++. |+.|++|++
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 99999887655531 2334444 6999999999999998 999999986
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-26 Score=260.88 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=208.1
Q ss_pred hhHhhhccccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeee
Q 002234 626 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 703 (949)
Q Consensus 626 ~~~~~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i 703 (949)
+|...+....++++| .++++.+|+.+........|.+.|++++|||+ +||+++.||+|++||..+ ++
T Consensus 50 gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l 118 (588)
T 2j04_A 50 CNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----ML 118 (588)
T ss_dssp SBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EE
T ss_pred CCCccEEEEEECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----ee
Confidence 345555556666666 56777777655333333367899999999997 999999999999999543 66
Q ss_pred EEecccCC-----CEEEEEEecCCCEEEEEeCCCcEEEEECCCCee--------EEEE--eecCCCceeeeeeccceEEE
Q 002234 704 QQIREHTK-----AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--------HCVQ--VHDIKDQIQNLAVSNSILCF 768 (949)
Q Consensus 704 ~~l~~H~~-----~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~--------~~~~--~~~~~~~v~~l~~~~~~~~f 768 (949)
..+. |.. .|.+++|||||++|++|+.||+|++||+.++.. ..+. ...|...|.+++ |
T Consensus 119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa-------w 190 (588)
T 2j04_A 119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV-------W 190 (588)
T ss_dssp EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE-------E
T ss_pred eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE-------E
Confidence 6677 765 599999999999999999999999999998742 2221 134567899988 9
Q ss_pred EeCCCEEEEEEecCeEEEecCC----------------CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccc
Q 002234 769 IPQGAGIKVHLRNGKTKLLNSS----------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 832 (949)
Q Consensus 769 sp~g~~l~~~~~~g~i~~~~~~----------------~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 832 (949)
+|+| +++++.|+.+++|+.. ..|.+++|+++.+++++ +++|++||+.++.... ..
T Consensus 191 SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~------~~ 261 (588)
T 2j04_A 191 YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISS------LK 261 (588)
T ss_dssp ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEE------EE
T ss_pred cCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEE------EE
Confidence 9999 8888899999998731 24777888866788886 7999999999887742 12
Q ss_pred cCCCCCEEEEEE--eCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcE
Q 002234 833 LGKANPVHALQV--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR 910 (949)
Q Consensus 833 ~~h~~~V~~l~~--~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~ 910 (949)
.+|...|..+.| +|++..+++++.|| + ++|... .++++||..++++.|+++++|+...+.
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG-~-klw~~d---------------~~~~spd~~l~a~~d~~v~lW~~~g~~- 323 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTS-Y-KVLLED---------------ELHVTADNIIAPYLEKKFKKWSTIWNE- 323 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCE-E-EEEESS---------------SEEEECCCSSHHHHHHHHHHTTTTTTS-
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCC-C-EEEeec---------------cEEECCCceEEEEcCCEEEEEECCCCc-
Confidence 279999999999 99999999999887 7 999987 256889965555569999999985554
Q ss_pred EEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 911 IETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 911 ~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
+..+ .+...|.+++|||||+.+|+++.
T Consensus 324 l~~~--~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 324 FNNY--ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSSS--CCEEEEEEEEECTTSSEEEEEEE
T ss_pred eeee--ccceEEEEEEECCCCCEEEEEEe
Confidence 4444 23667999999999999999874
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=5.3e-24 Score=233.31 Aligned_cols=239 Identities=17% Similarity=0.207 Sum_probs=196.3
Q ss_pred hhccccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEec
Q 002234 630 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 630 ~~~~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
.+....+.+++.++++|+.||+|++||..+ .+..+.+|...+.++.+.++.+++|+.++.+++|+..++. ..+..+.
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~ 147 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-HHVATLS 147 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCc-eeEEEEc
Confidence 345567788999999999999999999984 5677889999999999999999999999999999998764 5677888
Q ss_pred ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee---EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 708 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
+|...+..+.|+++++++++++.||+|++||+.+++. .......+...|..+. ++|++..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~-------- 212 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-------WCPWQSNVL-------- 212 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE-------ECTTSTTEE--------
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE-------ecCCCCcEE--------
Confidence 9999999999999999999999999999999988641 1222233445555554 555544321
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE--CCCCEEE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVK 862 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~Dg~~I~ 862 (949)
.+++++.+++|++||......... ..+...+..+.|++++..+++++ .|+ .|+
T Consensus 213 -----------------~~~~~~~~~~i~lwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~sg~~d~-~i~ 267 (318)
T 4ggc_A 213 -----------------ATGGGTSDRHIRIWNVCSGACLSA-------VDAHSQVCSILWSPHYKELISGHGFAQN-QLV 267 (318)
T ss_dssp -----------------EEEECTTTCEEEEEETTTCCEEEE-------EECSSCEEEEEEETTTTEEEEEECTTTC-CEE
T ss_pred -----------------EEEecCCCCEEEEEeccccccccc-------ccceeeeeeeeecccccceEEEEEcCCC-EEE
Confidence 145677899999999998877532 34567899999999888777654 564 999
Q ss_pred EEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc
Q 002234 863 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 863 iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~ 909 (949)
+||+++++++.++. |...|++++|+|| +|++|+.||+|+|||+....
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999998 7899999999998 89999999999999987654
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.1e-23 Score=236.18 Aligned_cols=232 Identities=9% Similarity=0.072 Sum_probs=168.2
Q ss_pred EEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeC
Q 002234 692 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 771 (949)
Q Consensus 692 vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~ 771 (949)
+|++.+. .++.++..|.+.|++++|+|||++|++|+.|| +++||+.+++.... .... .+..+. +.++
T Consensus 3 i~s~~~~--~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--~~~~-~~~~~~-------~~~~ 69 (355)
T 3vu4_A 3 LGSMITR--NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--QEMR-HLSKVR-------MLHR 69 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--EECS-CCCEEE-------ECTT
T ss_pred ccccccc--CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--eecC-CeEEEE-------EcCC
Confidence 5667776 67778889999999999999999999998876 78999988643222 2111 244444 7777
Q ss_pred CCEEE-EEEecCeEEEecC-----------CCCceEEEEeCCEEEEEECCCcEEEEECCCC-ceeeeecccccccCCCCC
Q 002234 772 GAGIK-VHLRNGKTKLLNS-----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANP 838 (949)
Q Consensus 772 g~~l~-~~~~~g~i~~~~~-----------~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~ 838 (949)
++.++ ++..++.+++|+. ...|.++.++++.++++ .|+.|++||+.++ +.+.. +.. +
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~------~~~---~ 139 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITD------DIR---F 139 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSC------CEE---E
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEE------ecc---C
Confidence 77774 4556689999984 34688888888877766 4789999999988 55422 222 4
Q ss_pred EEEEEEeCCceEEEE--EECCCCEEEEEECCCCe---------------e-EEeec-CCCcEEEEEEcCC--EEEEEECC
Q 002234 839 VHALQVHNGLVYTAS--TSLDGAAVKMWSTSNYN---------------M-VGSLP-TLSEVRAMVVSSE--LVYLGCKG 897 (949)
Q Consensus 839 V~~l~~~~~~~~l~s--~s~Dg~~I~iwd~~~~~---------------~-~~~~~-~~~~v~~l~~s~d--~l~sgs~d 897 (949)
...+++++ .+++. ++.|| .|++||+.++. + +..+. |...|.+++|+|+ ++++|+.|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g-~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLG-QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTT-CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEc--cEEEEeCCCcCc-EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence 44556677 33444 45665 99999999865 1 45555 7899999999998 89999999
Q ss_pred Ce-EEEEECCCCcEEEEeccc-cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 898 GT-VEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 898 g~-I~vwd~~~~~~~~~l~~~-h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|+ |++||+.+++.+.++..+ |.+.|++++|+|||++|++++.||+|++||+.
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 98 999999999999999645 99999999999999999999999999999973
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=4e-24 Score=243.14 Aligned_cols=254 Identities=9% Similarity=0.008 Sum_probs=169.7
Q ss_pred ccccccccEEEEecCCCCeEEEecCC-------ceeeecCCCCceEEEEEeC--------C--EEEEEeCCCcEEEEecC
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFR--------D--KIFSGHSDGTIKVWTGR 696 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~~s~--------d--~lasgs~Dg~I~vWd~~ 696 (949)
..+..++.++++++.|++|++||... ....+.+|.+.|++++|+| | +|+||+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 34566788999999999999999863 2335789999999999987 3 89999999999999998
Q ss_pred CCceeeeEEecccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEE
Q 002234 697 GSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
++ .++..+.+|.+.|.+++|+|++ .+|++|+.||+|++||+.+++..... ..+........ ++++....
T Consensus 175 ~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~-~~~~~~~~~~~-------~s~~~~~~ 244 (393)
T 4gq1_A 175 DE--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN-SQTELVKNPWL-------LTLNTLPL 244 (393)
T ss_dssp TT--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCS-------EEEESGGG
T ss_pred CC--ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc-cccCCcccceE-------Eecccccc
Confidence 88 6777888899999999999986 58999999999999999987521111 11111111111 11111110
Q ss_pred EEEEecCeEEEecCCCCceEEEEe---CCEEEEEECCCcEEEEECCCCceeeeecccc-------------cccCCCCCE
Q 002234 776 KVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATGTFATIQTGHR-------------KLLGKANPV 839 (949)
Q Consensus 776 ~~~~~~g~i~~~~~~~~v~~v~~~---~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------------~~~~h~~~V 839 (949)
. .......+...+.++.+. +..+++++.|+++++||+.++.....+..+. ....+...+
T Consensus 245 ~-----~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 245 V-----NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp C-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred e-----eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 0 001112356678888876 2569999999999999998876553221110 011111112
Q ss_pred EEEEEe--CCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEEC
Q 002234 840 HALQVH--NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 840 ~~l~~~--~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~ 905 (949)
...++ +++.++++++.|| +|++||+.++.....+. |...|.+++|+|| +|++++.+| +.+|.+
T Consensus 320 -~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 320 -GACPHPRYMDYFATAHSQHG-LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp -CCEECSSCTTEEEEEETTTT-EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred -eEEEccCCCCEEEEEECCCC-EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 22333 2566777887786 99999999988776655 7889999999999 788888766 555554
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=1.1e-23 Score=242.56 Aligned_cols=234 Identities=12% Similarity=0.147 Sum_probs=188.4
Q ss_pred cccccc-ccEEEEecCCCCeEEEecCC------------ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCC
Q 002234 634 SPLAFE-MVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 697 (949)
Q Consensus 634 ~~~~~~-~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t 697 (949)
..+.++ +..+++++.||.|++|+... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+
T Consensus 134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 334444 67899999999999999863 45567789999999999985 899999999999999987
Q ss_pred Cc-----eeeeEEecccCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCe--eEEEEeecCCCceeeeeeccceEEEE
Q 002234 698 SI-----LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFI 769 (949)
Q Consensus 698 ~~-----~~~i~~l~~H~~~V~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~fs 769 (949)
+. ......+.+|...|.+++|+| ++.+|++++.||.|++||++++. ........+...|.++. |+
T Consensus 214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~-------~~ 286 (430)
T 2xyi_A 214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS-------FN 286 (430)
T ss_dssp CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE-------EC
T ss_pred CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE-------eC
Confidence 31 122567779999999999999 78899999999999999999862 12222234566676666 77
Q ss_pred eCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc-eeeeecccccccCCCCCEEEEEEeCCc
Q 002234 770 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHNGL 848 (949)
Q Consensus 770 p~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~ 848 (949)
|++.. .+++|+.||.|++||+++.. .+ ..+.+|..+|.+++|+|++
T Consensus 287 p~~~~---------------------------~l~tg~~dg~v~vwd~~~~~~~~------~~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 287 PYSEF---------------------------ILATGSADKTVALWDLRNLKLKL------HSFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp SSCTT---------------------------EEEEEETTSEEEEEETTCTTSCS------EEEECCSSCEEEEEECSSC
T ss_pred CCCCC---------------------------EEEEEeCCCeEEEEeCCCCCCCe------EEeecCCCCEEEEEECCCC
Confidence 76653 37899999999999999843 33 4566789999999999988
Q ss_pred e-EEEEEECCCCEEEEEECCC--------------CeeEEeec-CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCC
Q 002234 849 V-YTASTSLDGAAVKMWSTSN--------------YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 849 ~-~l~s~s~Dg~~I~iwd~~~--------------~~~~~~~~-~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~ 908 (949)
. ++++++.|| .|++||+.. ...+..+. |...|.+++|+|+ .+++++.||.|+||++...
T Consensus 334 ~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 334 ETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 4 688888886 999999987 24555555 6778999999998 7899999999999998754
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=6.2e-23 Score=235.84 Aligned_cols=258 Identities=11% Similarity=0.104 Sum_probs=202.0
Q ss_pred EEecCCCCeEEEecCC------ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeE-----EecccC
Q 002234 644 LSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ-----QIREHT 710 (949)
Q Consensus 644 ~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~-----~l~~H~ 710 (949)
++++.++.+++|.++. ....+. +...+.+++|+|+ ++++++.|++|++||+.++ +... .+.+|.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFK-TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEE-CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEc-CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccC
Confidence 3556667566665531 222232 3455679999986 7778888999999999998 4555 456899
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
+.|++++|+|+++++++++.|++|++||+++++.. .....+...+.++. |+|+++.+
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~l--------------- 226 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK-ATVDLTGKWSKILL-------YDPIRDLV--------------- 226 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE-EEEECSSSSEEEEE-------EETTTTEE---------------
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE-EEEcCCCCCeeEEE-------EcCCCCEE---------------
Confidence 99999999999999999999999999999987522 22224556666666 88888752
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEEC--------CCCEEE
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL--------DGAAVK 862 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--------Dg~~I~ 862 (949)
+++++.|+.|++||+.+++....+ .. ...+.+++|+|++.++++++. || .|+
T Consensus 227 ------------~~~~~~~~~i~~~d~~~~~~~~~~------~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg-~i~ 286 (433)
T 3bws_A 227 ------------YCSNWISEDISVIDRKTKLEIRKT------DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGG-RLG 286 (433)
T ss_dssp ------------EEEETTTTEEEEEETTTTEEEEEC------CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCE-EEE
T ss_pred ------------EEEecCCCcEEEEECCCCcEEEEe------cC-CCCceEEEEcCCCCEEEEEECCCCccccCCC-eEE
Confidence 345557999999999998876432 22 345899999999988888773 54 999
Q ss_pred EEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 863 MWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 863 iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
+||+.+++....+.+...+.+++|+|+ .+++++.++.|++||..+++.+..+. +...+.+++|+|||+++++++.
T Consensus 287 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 287 IYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp EEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEC
T ss_pred EEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEec
Confidence 999999998888877778999999998 45666899999999999999888884 6678999999999999988876
Q ss_pred ---------------CCcEEEEeCC
Q 002234 940 ---------------DGRIQAWGLS 949 (949)
Q Consensus 940 ---------------Dg~I~iWdl~ 949 (949)
||.|++||+.
T Consensus 365 ~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 365 GPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp CCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCCccccccccccccceEEEEEECC
Confidence 5799999973
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=2.3e-22 Score=216.95 Aligned_cols=234 Identities=12% Similarity=0.100 Sum_probs=160.4
Q ss_pred EEEEecCCCCeEEEecCC-----ceeeecCCCCc-------------------------eEEEEEeCC------EEEEEe
Q 002234 642 KVLSNGHDSSADFWNHRE-----LVHVDSSENGK-------------------------VLSIACFRD------KIFSGH 685 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~-------------------------V~~l~~s~d------~lasgs 685 (949)
-+++++ ..+|++|+... ..+...+|..+ |.+++|+|| .+++++
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 455555 46799999863 35555666554 455555554 455544
Q ss_pred C--------------------CCcEEEEec-CCCceeeeEEecccCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCC
Q 002234 686 S--------------------DGTIKVWTG-RGSILHLIQQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGN 741 (949)
Q Consensus 686 ~--------------------Dg~I~vWd~-~t~~~~~i~~l~~H~~~V~~v~fsp---dg~~L~Sgs~Dg~I~vWd~~~ 741 (949)
. |++|++|++ .++ +.+..+.+|...+..++|+| ++.+|+|||.|++|+|||+.+
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T 212 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT 212 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence 3 888999998 446 67777788998999999998 679999999999999999999
Q ss_pred Cee-EEEEeec-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC
Q 002234 742 EEI-HCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 742 ~~~-~~~~~~~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~ 819 (949)
|+. ..+..+. +...+.++. |+|+|..+++...+.. .| .+++|+.|++|++||..+
T Consensus 213 Gk~l~tL~g~~~~v~~v~~va-------fSpdG~~lvs~s~~~~--~w--------------~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 213 GQLLKKMHIDDSYQASVCHKA-------YSEMGLLFIVLSHPCA--KE--------------SESLRSPVFQLIVINPKT 269 (356)
T ss_dssp CCEEEEEECCC---CCCEEEE-------EEETTEEEEEEC----------------------------CCEEEEEEETTT
T ss_pred CcEEEEEcCCCcceeeeEEEE-------ECCCCCEEEEeccCCC--cc--------------eeeccCCCcEEEEEECCC
Confidence 962 2222111 122344444 9999988776654322 12 378999999999999999
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEE-EEEEcCC--EEEEEE
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR-AMVVSSE--LVYLGC 895 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~-~l~~s~d--~l~sgs 895 (949)
++.+..+.... ..+|...+.+..+ ++.++++++.|+ +|+|||+.+++++.++. |...+. +++|+|| ++++|+
T Consensus 270 gk~l~v~~~~~-p~Gh~~~~lsg~~--sg~~lASgS~Dg-TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 270 TLSVGVMLYCL-PPGQAGRFLEGDV--KDHCAAAILTSG-TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TEEEEEEEECC-CTTCCCCEEEEEE--ETTEEEEEETTS-CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CEEEEEEEeec-cCCCcceeEcccc--CCCEEEEEcCCC-cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 98875432110 2366665544443 377899999996 99999999999999998 545444 6899999 899999
Q ss_pred CCCeEEEEEC
Q 002234 896 KGGTVEIWDQ 905 (949)
Q Consensus 896 ~dg~I~vwd~ 905 (949)
.|++|+|||+
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999995
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=1.4e-21 Score=221.19 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=201.3
Q ss_pred cccccccccEE-EEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EE-EEEeCCCcEEEEecCCCceeeeEEe
Q 002234 633 YSPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 633 ~~~~~~~~~~l-~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~l-asgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
...+++++.++ ++++.|++|++||..+ ....+.. ...+.+++|+|+ ++ ++++.|++|++||+.++ +.+..+
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~~~ 112 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAGTV 112 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEEEE
Confidence 45567788876 6777999999999874 3333433 349999999996 55 55667899999999998 677777
Q ss_pred cccCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 707 REHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 707 ~~H~~~V~~v~fspdg~~L-~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
.. ...+.+++|+|+|+++ ++++.|+.|++||+.+++.. ........+..+. |+|+|+.+
T Consensus 113 ~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~-------~~~dg~~l---------- 172 (391)
T 1l0q_A 113 KT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI--NTVSVGRSPKGIA-------VTPDGTKV---------- 172 (391)
T ss_dssp EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEECCSSEEEEE-------ECTTSSEE----------
T ss_pred eC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--EEEecCCCcceEE-------ECCCCCEE----------
Confidence 64 4578999999999977 78888999999999998532 2233234445554 88888753
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE---CCCCEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS---LDGAAVK 862 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~Dg~~I~ 862 (949)
+++++.|+.|++||+.+++..... .+...+.+++|+|++.++++++ .++ .|+
T Consensus 173 -----------------~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~v~ 227 (391)
T 1l0q_A 173 -----------------YVANFDSMSISVIDTVTNSVIDTV-------KVEAAPSGIAVNPEGTKAYVTNVDKYFN-TVS 227 (391)
T ss_dssp -----------------EEEETTTTEEEEEETTTTEEEEEE-------ECSSEEEEEEECTTSSEEEEEEECSSCC-EEE
T ss_pred -----------------EEEeCCCCEEEEEECCCCeEEEEE-------ecCCCccceEECCCCCEEEEEecCcCCC-cEE
Confidence 356778899999999998776432 2346789999999998888887 454 999
Q ss_pred EEECCCCeeEEeecCCCcEEEEEEcCC--EE-EEEECCCeEEEEECCCCcEEEEecccccccee---EEE----------
Q 002234 863 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LV-YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ---CMA---------- 926 (949)
Q Consensus 863 iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l-~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~---~l~---------- 926 (949)
+||+.+++.+..+..+..+.+++|+|+ ++ ++++.|+.|++||+.+++.+..+. .|..+.. .+.
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCB
T ss_pred EEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE-CCcCCCccceeeecccccccccc
Confidence 999999999998887778999999998 45 566889999999999999888874 3333211 122
Q ss_pred --EeCCC----------CEEEEEeCCCcEEEEeC
Q 002234 927 --LDDNE----------EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 927 --~spdg----------~~L~sgs~Dg~I~iWdl 948 (949)
|+.+. -.+...+.|.++++||+
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 22221 23556667889999997
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=5.8e-22 Score=226.91 Aligned_cols=260 Identities=13% Similarity=0.060 Sum_probs=200.7
Q ss_pred cEEEEec----CCC----CeEEEec--CCc--e--eeecCCCCceEEEEEe----------------CCEEEEEeCC---
Q 002234 641 VKVLSNG----HDS----SADFWNH--REL--V--HVDSSENGKVLSIACF----------------RDKIFSGHSD--- 687 (949)
Q Consensus 641 ~~l~s~s----~dg----~I~vWd~--~~~--~--~~~~~h~~~V~~l~~s----------------~d~lasgs~D--- 687 (949)
..+++|+ .|| +|++||. .+. + ..+.+|...+..++++ ...++.++.+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~ 155 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGG 155 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCC
Confidence 3566765 467 8999999 632 2 3477888888887776 3466666654
Q ss_pred ---CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCeeEEEEeecCCCceeeeee
Q 002234 688 ---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQIQNLAV 761 (949)
Q Consensus 688 ---g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg---~I~vWd~~~~~~~~~~~~~~~~~v~~l~~ 761 (949)
++|++||+.++ ....+.+|...|.+++|+|||++|++++.|+ +|++||+.+++... ...+...+.++.
T Consensus 156 ~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~~~~~~- 229 (415)
T 2hqs_A 156 QFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPA- 229 (415)
T ss_dssp SCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSCEEEEE-
T ss_pred CccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCcccCEE-
Confidence 79999999865 5677788999999999999999999999885 99999999986443 344456677766
Q ss_pred ccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--cEEEEECCCCceeeeecccccccCCCCCE
Q 002234 762 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPV 839 (949)
Q Consensus 762 ~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 839 (949)
|+|||+.+ +++++.|+ .|++||+.+++.. .+..|...+
T Consensus 230 ------~spdg~~l---------------------------a~~~~~~g~~~i~~~d~~~~~~~-------~l~~~~~~~ 269 (415)
T 2hqs_A 230 ------FSPDGSKL---------------------------AFALSKTGSLNLYVMDLASGQIR-------QVTDGRSNN 269 (415)
T ss_dssp ------ECTTSSEE---------------------------EEEECTTSSCEEEEEETTTCCEE-------ECCCCSSCE
T ss_pred ------EcCCCCEE---------------------------EEEEecCCCceEEEEECCCCCEE-------eCcCCCCcc
Confidence 99999864 23455555 4999999988753 455677889
Q ss_pred EEEEEeCCceEEEEEECCCC--EEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC---CeEEEEECCCCcEEE
Q 002234 840 HALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIE 912 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d---g~I~vwd~~~~~~~~ 912 (949)
.+++|+|++.+++.++.+++ .|.+||+.+++......+...+.+++|+|| ++++++.+ +.|++||+.+++..
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 99999999999888876443 688889988875544446678899999999 67776653 58999999998864
Q ss_pred EeccccccceeEEEEeCCCCEEEEEeCCC---cEEEEeCC
Q 002234 913 TLQTGTSGKVQCMALDDNEEFLVIGTSDG---RIQAWGLS 949 (949)
Q Consensus 913 ~l~~~h~~~I~~l~~spdg~~L~sgs~Dg---~I~iWdl~ 949 (949)
.+. .|. .+.+++|+|||++|++++.|+ .|++||++
T Consensus 349 ~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 349 VLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp ECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred Eec-CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 453 444 899999999999999998877 79999874
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=7.5e-21 Score=224.79 Aligned_cols=300 Identities=10% Similarity=0.058 Sum_probs=222.5
Q ss_pred ccccccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEec--CCCceeeeEEeccc
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG--RGSILHLIQQIREH 709 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~--~t~~~~~i~~l~~H 709 (949)
+++++..+++++.|++|.+||..+ .+..+..+.. +.+++|+|+ ++++++.|++|++||+ .++ +++.++. +
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-~ 220 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-I 220 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-C
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-c
Confidence 455788899999999999999874 4455553333 899999997 9999999999999999 777 7788886 5
Q ss_pred CCCEEEEEEec----CCCEEEEEeC-CCcEEEEECCCCeeE-EEEeec--------C-CCceeeeeeccceEEEEeCCCE
Q 002234 710 TKAVTGLAILQ----SGEMLYSGSL-DKTARVWSIGNEEIH-CVQVHD--------I-KDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 710 ~~~V~~v~fsp----dg~~L~Sgs~-Dg~I~vWd~~~~~~~-~~~~~~--------~-~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
...+..++|+| ||+++++++. +++|.+||..+++.. .+.... + ...+..+. ++|++..
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~-------~s~~~~~ 293 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII-------ASHEHPE 293 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE-------ECSSSSE
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE-------ECCCCCE
Confidence 56689999999 9999999985 899999999988632 222211 1 11344444 8888776
Q ss_pred EEEEE-ecCeEEEecCC-------------CCceEEEEeC--CEEEEE-ECCCcEEEEECCCCceeeeecccccccCCCC
Q 002234 775 IKVHL-RNGKTKLLNSS-------------KYPKCLALVQ--GKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKAN 837 (949)
Q Consensus 775 l~~~~-~~g~i~~~~~~-------------~~v~~v~~~~--~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 837 (949)
+++.. .++.+.+|+.. ..+..+.|++ .+++++ ..+++|.+||..++++....... ...|..
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g--~~ph~g 371 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG--KTPHPG 371 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSBCCT
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC--CCCCCC
Confidence 65544 45778777743 3455677875 345555 46899999999999887554321 123544
Q ss_pred CEEEEEEeCC-ceEEEEEECCCCEEEEEECCC-------CeeEEeec-CCCcEEEEEEcCC--EEEEEE-------CCCe
Q 002234 838 PVHALQVHNG-LVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-TLSEVRAMVVSSE--LVYLGC-------KGGT 899 (949)
Q Consensus 838 ~V~~l~~~~~-~~~l~s~s~Dg~~I~iwd~~~-------~~~~~~~~-~~~~v~~l~~s~d--~l~sgs-------~dg~ 899 (949)
....+ ++|+ +.++++++.++++|.+||+.+ ++.++++. +...+..++++|| ++++++ .+++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 33333 4676 777777653334999999998 88999998 4567788999999 788876 2679
Q ss_pred EEEEECCCCcEE-EEec-------cccccceeEEEEeCCCCEEEEEe-----CCCcEEEEeCC
Q 002234 900 VEIWDQKRQIRI-ETLQ-------TGTSGKVQCMALDDNEEFLVIGT-----SDGRIQAWGLS 949 (949)
Q Consensus 900 I~vwd~~~~~~~-~~l~-------~~h~~~I~~l~~spdg~~L~sgs-----~Dg~I~iWdl~ 949 (949)
|.|||+.+++.. ..+. ..+...+..+.|+|||+.++++. .|+.|.|||..
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 999999999877 4441 24567899999999999998763 47999999963
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=6.4e-20 Score=202.49 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=193.3
Q ss_pred ccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeC-CCcEEEEecCCCceee-eEEecccCCCE
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHL-IQQIREHTKAV 713 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~-Dg~I~vWd~~t~~~~~-i~~l~~H~~~V 713 (949)
...+++++.++.|.+||..+ .......+...+ +++|+|+ ++++++. ++.|.+||..++ +. ...+..+..+.
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSM 86 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCc
Confidence 34578888999999999873 344444556667 9999996 5555554 899999999998 44 66677777776
Q ss_pred EEEEEecCCCEEEEEeCCC---cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 714 TGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~Dg---~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
.+++|+|+|++++++..++ .|.+||+.+++.. ...........+. |+|+|+.+
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~-------~spdg~~l--------------- 142 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI--STIPIPYDAVGIA-------ISPNGNGL--------------- 142 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE--EEEECCTTEEEEE-------ECTTSSCE---------------
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeE--EEEECCCCccceE-------ECCCCCEE---------------
Confidence 6699999999999555553 8999999998532 2233333444554 88888763
Q ss_pred CCceEEEEeCCEEEEEECCCc-EEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC
Q 002234 791 KYPKCLALVQGKVYCGCQDGA-IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 869 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~ 869 (949)
++++..++. |.+|++.......... ... ......+..++|+|++.+++..+..++.|.+||+.++
T Consensus 143 ------------~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 143 ------------ILIDRSSANTVRRFKIDADGVLFDTG-QEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp ------------EEEEETTTTEEEEEEECTTCCEEEEE-EEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred ------------EEEecCCCceEEEEEECCCCcEeecC-Ccc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 344456677 9999988654432221 111 2334568999999999876666654459999999998
Q ss_pred ee---EEeecCCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcE--EEEeccc---ccc---ceeEEEEeCCCCEEE
Q 002234 870 NM---VGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIR--IETLQTG---TSG---KVQCMALDDNEEFLV 935 (949)
Q Consensus 870 ~~---~~~~~~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~--~~~l~~~---h~~---~I~~l~~spdg~~L~ 935 (949)
+. +..+.....+..++|+|| ++++++ .++.|.+||..+++. +..+... +.. ....++|+|||++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 209 ENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp TSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 88 888887788899999998 565554 578899999999886 4444211 122 235689999999886
Q ss_pred EEe-CCCcEEEEeCC
Q 002234 936 IGT-SDGRIQAWGLS 949 (949)
Q Consensus 936 sgs-~Dg~I~iWdl~ 949 (949)
+++ .++.|.+||++
T Consensus 289 v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 289 ISANISRELKVFTIS 303 (331)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EecCCCCcEEEEEec
Confidence 655 56799999974
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.1e-19 Score=201.11 Aligned_cols=269 Identities=11% Similarity=0.193 Sum_probs=187.5
Q ss_pred cEEEEecCCCCeEEEecC---C-ceeeecCCCCceEEEEEeCC--EEEEEeCC-CcEEEEecC--CCceeeeEEecccCC
Q 002234 641 VKVLSNGHDSSADFWNHR---E-LVHVDSSENGKVLSIACFRD--KIFSGHSD-GTIKVWTGR--GSILHLIQQIREHTK 711 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~---~-~~~~~~~h~~~V~~l~~s~d--~lasgs~D-g~I~vWd~~--t~~~~~i~~l~~H~~ 711 (949)
..+++++.|+.|++|+.. + .......|...+.+++|+|+ ++++++.+ +.|++|++. ++....+..+..+.
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 345555889999999985 1 12223457788999999997 68888776 999999998 66555666665544
Q ss_pred CEEEEEEecCCCEEEEEeC-CCcEEEEECCCCe-eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC
Q 002234 712 AVTGLAILQSGEMLYSGSL-DKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 789 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~ 789 (949)
.+..++|+|+|+++++++. ++.|.+||+..+. ............+.++. |+|+|+.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~s~dg~~--------------- 142 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN-------ISPDNRT--------------- 142 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE-------ECTTSSE---------------
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEE-------ECCCCCE---------------
Confidence 7899999999998877665 8899999995432 23333333334455555 8888875
Q ss_pred CCCceEEEEeCCEEEEEE-CCCcEEEEECCC-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 790 SKYPKCLALVQGKVYCGC-QDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 790 ~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
+++++ .++.|.+||+.+ ++....... .........+..++|+|++.+++.++..++.|.+||+.
T Consensus 143 -------------l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 143 -------------LWVPALKQDRICLFTVSDDGHLVAQDPA-EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp -------------EEEEEGGGTEEEEEEECTTSCEEEEEEE-EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred -------------EEEecCCCCEEEEEEecCCCceeeeccc-ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 45555 789999999987 554322100 00112235788999999999776666444599999995
Q ss_pred C--Cee--EEe---ecC----CCcEEEEEEcCC--EEE-EEECCCeEEEEECC--C--CcEEEEeccccccceeEEEEeC
Q 002234 868 N--YNM--VGS---LPT----LSEVRAMVVSSE--LVY-LGCKGGTVEIWDQK--R--QIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 868 ~--~~~--~~~---~~~----~~~v~~l~~s~d--~l~-sgs~dg~I~vwd~~--~--~~~~~~l~~~h~~~I~~l~~sp 929 (949)
. +.. ... +.. ...+..++|+|+ +++ ++..++.|.+||+. + .+.+..+. .+. .+.+++|+|
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~ 286 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDH 286 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECT
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECC
Confidence 3 332 222 221 246778999998 565 44578999999998 3 34555553 333 389999999
Q ss_pred CCCEEEEEe-CCCcEEEEeC
Q 002234 930 NEEFLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 930 dg~~L~sgs-~Dg~I~iWdl 948 (949)
||++|++++ .|+.|.+|++
T Consensus 287 dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 287 SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp TSSEEEEECTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCeEEEEEE
Confidence 999988887 6899999964
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=1.4e-19 Score=207.06 Aligned_cols=243 Identities=12% Similarity=0.092 Sum_probs=187.3
Q ss_pred ccEEEEecCC------CCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCCC---cEEEEecCCCceeeeEEec
Q 002234 640 MVKVLSNGHD------SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDG---TIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 640 ~~~l~s~s~d------g~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg---~I~vWd~~t~~~~~i~~l~ 707 (949)
+.+++.++.+ +.|++||... ....+.+|.+.|.+++|+|+ +|++++.|+ +|++||+.++ +. ..+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~-~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AV-RQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CE-EEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cE-EEee
Confidence 4555555543 7999999873 56677789999999999997 899998885 9999999998 34 3566
Q ss_pred ccCCCEEEEEEecCCCEEE-EEeCCCc--EEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 708 EHTKAVTGLAILQSGEMLY-SGSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 708 ~H~~~V~~v~fspdg~~L~-Sgs~Dg~--I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.|.+.+.+++|+|||++|+ +++.|+. |++||+.+++. .....+...+.++. |+|||+.
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~-------~spdg~~---------- 280 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPT-------WFPDSQN---------- 280 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEE-------ECTTSSE----------
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceE-------ECCCCCE----------
Confidence 7888999999999999888 6776665 99999998854 33344556666666 9999986
Q ss_pred EEecCCCCceEEEEeCCEEEEEEC-CC--cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--C
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQ-DG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--A 859 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~ 859 (949)
+++++. ++ .|.+||+.+++.. .+..|...+..++|+|++.+++.++.++ .
T Consensus 281 ------------------l~~~s~~~g~~~i~~~d~~~~~~~-------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 281 ------------------LAFTSDQAGRPQVYKVNINGGAPQ-------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 335 (415)
T ss_dssp ------------------EEEEECTTSSCEEEEEETTSSCCE-------ECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred ------------------EEEEECCCCCcEEEEEECCCCCEE-------EEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence 444443 44 6777899887643 3344566889999999999998887652 4
Q ss_pred EEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCC---eEEEEECCCCcEEEEeccccccceeEEEEeCCCC
Q 002234 860 AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg---~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
.|.+||+.+++... +.....+.+++|+|| .+++++.++ .|++||+. +.....+ .+|.+.|.+++|+|.-.
T Consensus 336 ~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l-~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 336 HIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL-PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEEC-CCSSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEe-eCCCCCCcCCccccccc
Confidence 89999999887743 443348999999998 677777666 89999987 4456667 57889999999999643
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=1.1e-19 Score=214.80 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=197.6
Q ss_pred EeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEEC--CCCeeEEEEeec
Q 002234 676 CFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI--GNEEIHCVQVHD 751 (949)
Q Consensus 676 ~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~--~~~~~~~~~~~~ 751 (949)
|+|+ .+++++.|++|.+||..++ +++.++..+.. +..++|+|||++|++++.|++|++||+ .+++ ......
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEEEe
Confidence 6665 7888999999999999999 78888873333 899999999999999999999999999 6764 333333
Q ss_pred CCCceeeeeeccceEEEEe----CCCEEEEEE-ecCeEEEecCCC-----------------------CceEEEEeC--C
Q 002234 752 IKDQIQNLAVSNSILCFIP----QGAGIKVHL-RNGKTKLLNSSK-----------------------YPKCLALVQ--G 801 (949)
Q Consensus 752 ~~~~v~~l~~~~~~~~fsp----~g~~l~~~~-~~g~i~~~~~~~-----------------------~v~~v~~~~--~ 801 (949)
....+..+. |+| +|+++++++ .++++.+|+... .+..+.+++ +
T Consensus 220 ~g~~p~~va-------~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 220 IGIEARSVE-------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp CCSEEEEEE-------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred cCCCcceEE-------eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 445556665 999 999998888 479999997321 345666764 2
Q ss_pred -EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec----
Q 002234 802 -KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---- 876 (949)
Q Consensus 802 -~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---- 876 (949)
.+++...++.|.+||..+++..... . ..+...+..+.|+|++.++++++.++++|.+||..+++++..+.
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~----~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVT----S-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEE----E-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEEECCCCeEEEEEecCCCcceeE----E-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 3667778999999999887654311 1 12456688899999999877666544599999999999988776
Q ss_pred -CCCcEEEEEEcCC---EEEEEE-CCCeEEEEECCC-------CcEEEEeccccccceeEEEEeCCCCEEEEEe------
Q 002234 877 -TLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKR-------QIRIETLQTGTSGKVQCMALDDNEEFLVIGT------ 938 (949)
Q Consensus 877 -~~~~v~~l~~s~d---~l~sgs-~dg~I~vwd~~~-------~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs------ 938 (949)
|......+ ++|+ .++++. .|++|.+||..+ ++.++++. +|.+.+..++|+|||++|++++
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 33333333 4665 455554 589999999998 89999995 7888899999999999999987
Q ss_pred -CCCcEEEEeCC
Q 002234 939 -SDGRIQAWGLS 949 (949)
Q Consensus 939 -~Dg~I~iWdl~ 949 (949)
.+++|.+||++
T Consensus 446 ~~~~~v~v~d~~ 457 (543)
T 1nir_A 446 RISQSVAVFDLK 457 (543)
T ss_dssp HHHTCEEEEETT
T ss_pred ccCceEEEEECC
Confidence 27899999974
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.5e-19 Score=194.72 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=182.1
Q ss_pred EecCCCCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC-CceeeeEEeccc-CCCEEEEEEe
Q 002234 645 SNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-SILHLIQQIREH-TKAVTGLAIL 719 (949)
Q Consensus 645 s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t-~~~~~i~~l~~H-~~~V~~v~fs 719 (949)
+++.|++|++||..+ ....+..|.+.|.+++|+|+ +|++++ ++.|++||+.+ + +......+| ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEEC
Confidence 457889999999874 34456678999999999997 777776 88999999999 7 455555555 4788999999
Q ss_pred cCCCEEEEEe--CCCcEEEEEC--CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceE
Q 002234 720 QSGEMLYSGS--LDKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 795 (949)
Q Consensus 720 pdg~~L~Sgs--~Dg~I~vWd~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~ 795 (949)
|+|++|++++ .++..++|.+ .++.... ......+..+. |+|+|+.+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~-------~spdg~~l-------------------- 143 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRL---MTKNLPSYWHG-------WSPDGKSF-------------------- 143 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEE---CCSSSSEEEEE-------ECTTSSEE--------------------
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEE---eecCCCccceE-------ECCCCCEE--------------------
Confidence 9999999999 3455556554 4543222 22222344444 88888863
Q ss_pred EEEeCCEEEEEECCCcEEEEECC--CCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC-CCeeE
Q 002234 796 LALVQGKVYCGCQDGAIQEIDLA--TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV 872 (949)
Q Consensus 796 v~~~~~~l~sgs~Dg~I~iwd~~--~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-~~~~~ 872 (949)
+++++.|+.+++|++. ++.. ..+..|...+.++.|+|++.+++.++..++.+++|++. .+...
T Consensus 144 -------~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 144 -------TYCGIRDQVFDIYSMDIDSGVE-------TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp -------EEEEEETTEEEEEEEETTTCCE-------EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred -------EEEECCCCceEEEEEECCCCcc-------eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 3467778888888853 3433 34455678899999999999888776533489999876 44555
Q ss_pred Eeec-CCCcEEEEEEcCC--EEEEEECC-----------CeEEEEECCCCcE--EEEeccccccceeEEEEeCCCCEEEE
Q 002234 873 GSLP-TLSEVRAMVVSSE--LVYLGCKG-----------GTVEIWDQKRQIR--IETLQTGTSGKVQCMALDDNEEFLVI 936 (949)
Q Consensus 873 ~~~~-~~~~v~~l~~s~d--~l~sgs~d-----------g~I~vwd~~~~~~--~~~l~~~h~~~I~~l~~spdg~~L~s 936 (949)
..+. +...+..+.|+|+ ++++++.+ +.|++||+.+++. +..+ .+|...+.+++|+|||++|++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL-FGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE-EESTTTSCSCCBCTTSSEEEE
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc-CCCCcccccceECCCCCEEEE
Confidence 5555 5677889999998 67776654 5799999998865 3333 367788999999999999988
Q ss_pred EeCCC
Q 002234 937 GTSDG 941 (949)
Q Consensus 937 gs~Dg 941 (949)
++.|.
T Consensus 289 ~~~~~ 293 (297)
T 2ojh_A 289 VRYFP 293 (297)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 87654
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=4.6e-19 Score=218.66 Aligned_cols=307 Identities=11% Similarity=0.069 Sum_probs=211.8
Q ss_pred ccccccccccEEEEecC-CC-----CeEEEecCC--ceeeecCCC------------------------CceEEEEEeCC
Q 002234 632 KYSPLAFEMVKVLSNGH-DS-----SADFWNHRE--LVHVDSSEN------------------------GKVLSIACFRD 679 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~-dg-----~I~vWd~~~--~~~~~~~h~------------------------~~V~~l~~s~d 679 (949)
....+++||.+|++++. |+ .|++||..+ .......|. ..|.+++||||
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 35667889999999998 88 899999874 333343332 23889999997
Q ss_pred --EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCcee
Q 002234 680 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 680 --~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~ 757 (949)
+|++++. ++|++||+.++.......+..|...+..++|+|||++|++++. +.|++||+.+++...+.... ...+.
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~-~~~~~ 196 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADG-STTIG 196 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCC-CSSEE
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCC-cccee
Confidence 7887776 9999999998710044567778899999999999999999885 68999999998643332221 11110
Q ss_pred e-e-------e-eccceEEEEeCCCEEEEEEecC---------------------------------eEEEecCCC----
Q 002234 758 N-L-------A-VSNSILCFIPQGAGIKVHLRNG---------------------------------KTKLLNSSK---- 791 (949)
Q Consensus 758 ~-l-------~-~~~~~~~fsp~g~~l~~~~~~g---------------------------------~i~~~~~~~---- 791 (949)
. + . .....+.|+|||+.+++...++ .+.+|+..+
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 0 0 0 0012345999999999987765 666777433
Q ss_pred -----------CceEEEEeC--CEEEEEEC-----CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 792 -----------YPKCLALVQ--GKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 792 -----------~v~~v~~~~--~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
.+..++| + ..|++++. +..|.+||+.+++......... .+....+..++|+||+.++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCCEECTTSCEEEE
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCceEECCCCeEEEE
Confidence 2345566 4 45666543 5689999999998765433211 111114567899999998888
Q ss_pred EECCCCEEEEEECC-CCeeEEeec-CCCcEEEE-EEcCC--EE-EEEECCC--eEEEEECCC-CcEEEEeccccccceeE
Q 002234 854 TSLDGAAVKMWSTS-NYNMVGSLP-TLSEVRAM-VVSSE--LV-YLGCKGG--TVEIWDQKR-QIRIETLQTGTSGKVQC 924 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~-~~~~~~~~~-~~~~v~~l-~~s~d--~l-~sgs~dg--~I~vwd~~~-~~~~~~l~~~h~~~I~~ 924 (949)
++.|| .+++|.+. ++. ...+. +...+..+ .|+|| .+ ++++.++ .++||++.. +.....+. + ...+..
T Consensus 354 ~~~~g-~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-~-~~~~~~ 429 (741)
T 2ecf_A 354 SERTG-FQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS-K-APGMHS 429 (741)
T ss_dssp ECTTS-SCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC-C-SCSEEE
T ss_pred ecCCC-ccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc-c-CCCceE
Confidence 87776 67777665 344 55665 56678777 59998 45 4555555 899999864 55566664 3 556889
Q ss_pred EEEeCCCCEEEEEeCC----CcEEEEeC
Q 002234 925 MALDDNEEFLVIGTSD----GRIQAWGL 948 (949)
Q Consensus 925 l~~spdg~~L~sgs~D----g~I~iWdl 948 (949)
++|||||++|+....+ +.+.+|+.
T Consensus 430 ~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 430 ASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred EEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 9999999988876543 46777774
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=1e-18 Score=192.60 Aligned_cols=256 Identities=10% Similarity=0.080 Sum_probs=184.8
Q ss_pred cEEEEecCCCCeEEEecCCc--eeeec-CCCC-ceEEEEEeCC--E-EEEEeCCCcEEEEecCCCceeeeEEecc-c---
Q 002234 641 VKVLSNGHDSSADFWNHREL--VHVDS-SENG-KVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIRE-H--- 709 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~~--~~~~~-~h~~-~V~~l~~s~d--~-lasgs~Dg~I~vWd~~t~~~~~i~~l~~-H--- 709 (949)
.++++++.++.|.+||..+. ..... ++.. .+..++|+|+ . +++++.++.|.+||+.++ +.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCccc
Confidence 47889999999999999742 22222 2222 5889999996 4 566667899999999998 55555542 2
Q ss_pred -CCCEEEEEEecCCCEEEEEe------------CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 710 -TKAVTGLAILQSGEMLYSGS------------LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 710 -~~~V~~v~fspdg~~L~Sgs------------~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
...+..++|+|+|+++++++ .++.|.+||+.+++.. ........+..+. |+|+|+.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~-------~s~dg~~-- 148 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--KAFEAPRQITMLA-------WARDGSK-- 148 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--EEEECCSSCCCEE-------ECTTSSC--
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE--EEEeCCCCcceeE-------ECCCCCE--
Confidence 23678899999999999886 5799999999987532 2222233444444 8888875
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEEC
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 856 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 856 (949)
++++ ++.|.+||+.+++........ .+..++ .|+|++.++...+.
T Consensus 149 --------------------------l~~~--~~~i~~~d~~~~~~~~~~~~~----~~~~~~---~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 149 --------------------------LYGL--GRDLHVMDPEAGTLVEDKPIQ----SWEAET---YAQPDVLAVWNQHE 193 (337)
T ss_dssp --------------------------EEEE--SSSEEEEETTTTEEEEEECST----TTTTTT---BCCCBCCCCCCCCT
T ss_pred --------------------------EEEe--CCeEEEEECCCCcEeeeeecc----ccCCCc---eeCCCccEEeeecc
Confidence 4444 688999999988876433211 111222 56777765544433
Q ss_pred CCC-----------------------EEEEEECCCCeeEEeec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC
Q 002234 857 DGA-----------------------AVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 857 Dg~-----------------------~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~ 908 (949)
+++ .|.+||+.+++.. .+. +...+.+++|+|| +++++ ++.|++||..++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred CCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence 332 4789999998765 322 4567889999999 66666 799999999999
Q ss_pred cEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 909 IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 909 ~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+.+..+.. ...+.+++|+|||++|++++.|+.|++||+.
T Consensus 271 ~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 271 ASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred cCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 98888753 3468999999999999999999999999973
No 136
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.82 E-value=1.8e-20 Score=164.86 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCCCCCCCCcccCcCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHC
Q 002234 8 PGIGKHTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN 86 (949)
Q Consensus 8 ~~~~~~~~~~~~~Cpic~~~~~dPv~~~cg-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 86 (949)
.......+|++|.||||+++|+|||+++|| |+|||.||++|+.. +.+||.||+++....++ ||..|+++|+.|+.++
T Consensus 12 ~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~-pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 12 EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIR-PNTELKEKIQRWLAER 89 (98)
T ss_dssp CCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSE-ECHHHHHHHHHHHHHS
T ss_pred chhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhce-EcHHHHHHHHHHHHHc
Confidence 334456789999999999999999999999 99999999999986 56899999999999996 9999999999999998
Q ss_pred CCCC
Q 002234 87 PGGL 90 (949)
Q Consensus 87 ~~~~ 90 (949)
+...
T Consensus 90 ~~~~ 93 (98)
T 1wgm_A 90 KQQS 93 (98)
T ss_dssp TTCS
T ss_pred chhh
Confidence 7653
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=7.7e-18 Score=187.14 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=194.0
Q ss_pred ccccccccEEEEecC-------CCCeEEEecCCc--eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCcee
Q 002234 634 SPLAFEMVKVLSNGH-------DSSADFWNHREL--VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 701 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~-------dg~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~ 701 (949)
..+++++.++++++. ++.|.+||..+. ..... +...+..++|+|+ .++++..++.|.+||..++ +
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~ 122 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--E 122 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--C
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--e
Confidence 446667887777664 568999998742 22222 3445788999996 4555666899999999998 5
Q ss_pred eeEEecccCCC---------EEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEEEeec-CCCceeeeeeccceEEEE
Q 002234 702 LIQQIREHTKA---------VTGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFI 769 (949)
Q Consensus 702 ~i~~l~~H~~~---------V~~v~fspdg~~L~Sgs--~Dg~I~vWd~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~fs 769 (949)
.+..+..+... +.+++|+|+|+++++++ .++.|.+||..+++.. .... ....+..+. |+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~-------~s 193 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK--TAIQNTGKMSTGLA-------LD 193 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE--EEECCCCTTCCCCE-------EE
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE--EEecCCCCccceEE-------EC
Confidence 66666554332 78899999999887776 4889999999998532 2222 233344554 88
Q ss_pred eCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCce
Q 002234 770 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 770 p~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 849 (949)
|+|+. +++++.++.|.+||..+++....... ...++...+..++|+|++.
T Consensus 194 ~dg~~----------------------------l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 194 SEGKR----------------------------LYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp TTTTE----------------------------EEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTT
T ss_pred CCCCE----------------------------EEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCC
Confidence 88875 66777889999999999887754332 1123456788999999998
Q ss_pred EEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEeccccccceeEEE
Q 002234 850 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 926 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~ 926 (949)
+++.++.+++.|.+||..+++.+..+..... ..++|+|+ ++++++ .++.|.+||..+++.+..+.. ...+.+++
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~ 320 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLA 320 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEE
Confidence 7777776656999999999998888774433 56899988 565555 689999999999999888853 34689999
Q ss_pred EeCCCCEEEEEeCC
Q 002234 927 LDDNEEFLVIGTSD 940 (949)
Q Consensus 927 ~spdg~~L~sgs~D 940 (949)
|+|||++|+++..+
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999987776655
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=6e-18 Score=188.22 Aligned_cols=262 Identities=11% Similarity=0.123 Sum_probs=180.2
Q ss_pred CCCCeEEEecCC--c-e--eeecCCCCceEEEEEeCC-EEEEEeC---CCcEEEEecCCCceeeeEEecccCCCEEEEEE
Q 002234 648 HDSSADFWNHRE--L-V--HVDSSENGKVLSIACFRD-KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 718 (949)
Q Consensus 648 ~dg~I~vWd~~~--~-~--~~~~~h~~~V~~l~~s~d-~lasgs~---Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~f 718 (949)
.++.|.+|+++. . . .....+...+..++|+|| .+++++. ++.|++||+.++..+.+..+..|...+..++|
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456788887652 1 1 123345677889999997 4555544 68999999988865567776778888999999
Q ss_pred ecCCCEEEEEe-CCCcEEEEECC-CCeeEEEEeecCC----------CceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 719 LQSGEMLYSGS-LDKTARVWSIG-NEEIHCVQVHDIK----------DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 719 spdg~~L~Sgs-~Dg~I~vWd~~-~~~~~~~~~~~~~----------~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
+|||++|++++ .+++|.+|++. ++....+...... ..+..+. |+|+|+ +
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~spdg~-l----------- 154 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD-------LTPDNR-L----------- 154 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE-------ECTTSC-E-----------
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE-------ECCCCc-E-----------
Confidence 99999988888 68999999995 3433333322111 1133333 777776 2
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECC-CCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
+++...++.|.+||+. ++....... ........+..++|+|++.+++..+..++.|.+|+
T Consensus 155 ----------------~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 155 ----------------AVIDLGSDKVYVYNVSDAGQLSEQSV---LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK 215 (347)
T ss_dssp ----------------EEEETTTTEEEEEEECTTSCEEEEEE---EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----------------EEEeCCCCEEEEEEECCCCcEEEeee---EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4455567889999998 454332111 01112346788999999997777665556999999
Q ss_pred CCC--Cee--EEeec---C----CCcEEEEEEcCC--EE-EEEECCCeEEEEECCC---CcEEEEeccccccceeEEEEe
Q 002234 866 TSN--YNM--VGSLP---T----LSEVRAMVVSSE--LV-YLGCKGGTVEIWDQKR---QIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 866 ~~~--~~~--~~~~~---~----~~~v~~l~~s~d--~l-~sgs~dg~I~vwd~~~---~~~~~~l~~~h~~~I~~l~~s 928 (949)
+.. ++. ...+. . ...+..++|+|| ++ +++..++.|.+||+.. .+.+..+. .+...+..++|+
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~s 294 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLD 294 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEEC
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEEC
Confidence 874 443 22222 1 145889999999 45 4556789999999973 24555553 455678999999
Q ss_pred CCCCEEEEEeCC-CcEEEEeC
Q 002234 929 DNEEFLVIGTSD-GRIQAWGL 948 (949)
Q Consensus 929 pdg~~L~sgs~D-g~I~iWdl 948 (949)
|||++|++++.+ +.|.+|++
T Consensus 295 pdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEcCCCcEEEEEE
Confidence 999998888764 89999965
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=5.3e-19 Score=217.35 Aligned_cols=312 Identities=9% Similarity=0.023 Sum_probs=206.0
Q ss_pred cccccccccEEEEecCCCCeEEEecCC--ceeeecCCCC---ceEEEEEeCC--EEEEEeCC---------CcEEEEecC
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENG---KVLSIACFRD--KIFSGHSD---------GTIKVWTGR 696 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~---~V~~l~~s~d--~lasgs~D---------g~I~vWd~~ 696 (949)
...+++||.++++ +.||+|++||..+ ....+.+|.. .|.+++|||| +|++++.+ +.|++||+.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 3456778887765 7899999999873 4455666665 4999999997 88888764 788899999
Q ss_pred CCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceee-ee---------eccceE
Q 002234 697 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-LA---------VSNSIL 766 (949)
Q Consensus 697 t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~-l~---------~~~~~~ 766 (949)
+++...+....+|...+..++|||||+.|++++. +.|++||+.+++...+........+.. +. -....+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence 9843334444456667999999999999999987 789999999886443332211111000 00 000234
Q ss_pred EEEeCCCEEEEEEecC-eEEEecC-------CCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccccccCCCC
Q 002234 767 CFIPQGAGIKVHLRNG-KTKLLNS-------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN 837 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g-~i~~~~~-------~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 837 (949)
.|+|||+.++....++ .+..|.. ...+..+.+.. +.. ..+..|.+||+.+++....+..+.....+..
T Consensus 179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 4999999999887663 3444431 12244444432 110 2234899999998875433332222333467
Q ss_pred CEEEEEEeCCceEEEEEECC---CCEEEEEECCCCeeEEeec--CCCcE----EEEEEcCC--EEEE--EECCC------
Q 002234 838 PVHALQVHNGLVYTASTSLD---GAAVKMWSTSNYNMVGSLP--TLSEV----RAMVVSSE--LVYL--GCKGG------ 898 (949)
Q Consensus 838 ~V~~l~~~~~~~~l~s~s~D---g~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~s~d--~l~s--gs~dg------ 898 (949)
.+..++|+||+.++++.+.. ...|.+||+.+++....+. +...+ ..++|+|| .++. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 89999999999988776532 2489999999988766554 33333 37899998 3443 55667
Q ss_pred eEEEEE-CCCCc--EEEEeccccccceeEEEEeCCCCEEEEEeCC---CcEEEEeCC
Q 002234 899 TVEIWD-QKRQI--RIETLQTGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGLS 949 (949)
Q Consensus 899 ~I~vwd-~~~~~--~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D---g~I~iWdl~ 949 (949)
.|++|| ..++. ....+..++......++|+|||+.|+..+.+ +.+++|+++
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 577777 34444 1455533333333346999999999766655 789999863
No 140
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.81 E-value=2.2e-20 Score=165.07 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=70.2
Q ss_pred CCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
....+|++|.||||+++|+|||+++|||+|||.||++|+.. +.+||.||++++...++ ||..|+++|+.|+.++..
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~-pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLE-PVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSE-ECHHHHHHHHHHHHTTTC
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhce-ECHHHHHHHHHHHHHhhh
Confidence 44578999999999999999999999999999999999985 56999999999999996 999999999999998864
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=2.9e-18 Score=210.30 Aligned_cols=297 Identities=10% Similarity=0.063 Sum_probs=201.3
Q ss_pred ccEEEEecCCCCeEEEecCCce---eeecCCC-----------------CceEEEEEeCC-EEEEEeCCCcEEEEecCCC
Q 002234 640 MVKVLSNGHDSSADFWNHRELV---HVDSSEN-----------------GKVLSIACFRD-KIFSGHSDGTIKVWTGRGS 698 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~---~~~~~h~-----------------~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~ 698 (949)
+..+++++.|+ | +||..+.. ..+..|. ..|.+++|+|| .++.+ .|++|++||+.++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence 66777777788 8 99987422 3333332 56999999998 44444 4699999999988
Q ss_pred ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-----CeeEEEEeecCCCce-eeee------eccceE
Q 002234 699 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-----EEIHCVQVHDIKDQI-QNLA------VSNSIL 766 (949)
Q Consensus 699 ~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~-----~~~~~~~~~~~~~~v-~~l~------~~~~~~ 766 (949)
+. ..+..|...+.+++|+|||++|+++ .|+.|++||+.+ ++...+...... .+ ..+. -....+
T Consensus 112 --~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~-~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 112 --KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE-TLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp --EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT-TEEESSCCGGGCTTCCCSE
T ss_pred --ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC-CeEcccchhhhhcCCCceE
Confidence 33 3445577789999999999999995 679999999998 753332222111 11 0000 001234
Q ss_pred EEEeCCCEEEEEEe---------------------------------cCeEEEecCC--------------CCceEEEEe
Q 002234 767 CFIPQGAGIKVHLR---------------------------------NGKTKLLNSS--------------KYPKCLALV 799 (949)
Q Consensus 767 ~fsp~g~~l~~~~~---------------------------------~g~i~~~~~~--------------~~v~~v~~~ 799 (949)
.|+|||+.+++... +..+.+|+.. ..+.++.|+
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence 49999999998873 2456677632 346788888
Q ss_pred C--CEEEEEECCC-----cEEEEECCCCceeeeecccccccCCCCCEEEEEEeC--CceEEEEEECCCCEEEEEECC-CC
Q 002234 800 Q--GKVYCGCQDG-----AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTS-NY 869 (949)
Q Consensus 800 ~--~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~Dg~~I~iwd~~-~~ 869 (949)
+ ..+++++.|+ .|.+||+.+++........ ........+..+.|+| ++.++++++.|| .+++|++. ++
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g-~~~l~~~~~~~ 344 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDG-WNHLYLYDTTG 344 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTS-SCEEEEEETTS
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCC-ccEEEEEECCC
Confidence 6 3588877776 8999999998433221110 0011112346789999 999998888776 88899876 56
Q ss_pred eeEEeec-CCCcEEE-EEEcCC--EEEE-EECCC----eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 870 NMVGSLP-TLSEVRA-MVVSSE--LVYL-GCKGG----TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 870 ~~~~~~~-~~~~v~~-l~~s~d--~l~s-gs~dg----~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
..+..+. +...+.. ++|+|| .++. ++.++ .|+.||..+++ ...+. |...+.+++|||||++++.++.+
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~--~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT--PESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC--CSSSEEEEEECTTSSEEEEEEEC
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc--CCCceEEEEECCCCCEEEEEecC
Confidence 6666666 4556766 799998 4554 44444 77888887776 44442 56679999999999988876544
Q ss_pred ----CcEEEEeCC
Q 002234 941 ----GRIQAWGLS 949 (949)
Q Consensus 941 ----g~I~iWdl~ 949 (949)
+.|++||++
T Consensus 422 ~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 422 PTVPRKVTVTNIG 434 (706)
T ss_dssp SSCSCEEEEEESS
T ss_pred CCCCcEEEEEECC
Confidence 569999863
No 142
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.81 E-value=2.4e-20 Score=160.01 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=68.5
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
...+|++|.||||+++|+|||+++|||+|||.||++|+.. +.+||.||++++...++ ||..|+++|+.|+.++.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~-pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLE-PVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcc-hHHHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999986 56999999999999996 99999999999998764
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.80 E-value=7.2e-18 Score=215.90 Aligned_cols=296 Identities=11% Similarity=0.060 Sum_probs=224.0
Q ss_pred hccccccccccEEEEecCC------CCeEEEecCC-ceeeecCCCCce-------EEEEEeCC--EEEEEeCC------C
Q 002234 631 RKYSPLAFEMVKVLSNGHD------SSADFWNHRE-LVHVDSSENGKV-------LSIACFRD--KIFSGHSD------G 688 (949)
Q Consensus 631 ~~~~~~~~~~~~l~s~s~d------g~I~vWd~~~-~~~~~~~h~~~V-------~~l~~s~d--~lasgs~D------g 688 (949)
.....+++||.+|++++.+ ..|.+|+... ....+..|.+.+ .+++|+|| .+++++.+ .
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~ 134 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 134 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccc
Confidence 3456788899999987643 4789999874 356677888888 99999997 67777754 3
Q ss_pred cEEEEecCCCceee-----------------------------------------------eEEecccCCCEEEEEEecC
Q 002234 689 TIKVWTGRGSILHL-----------------------------------------------IQQIREHTKAVTGLAILQS 721 (949)
Q Consensus 689 ~I~vWd~~t~~~~~-----------------------------------------------i~~l~~H~~~V~~v~fspd 721 (949)
.|.+||+.++.... ...+.+|...+.++.|+++
T Consensus 135 ~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d 214 (1045)
T 1k32_A 135 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 214 (1045)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred eEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence 57788877653111 1223567788889999888
Q ss_pred CCEEEEEeCCCcEEEEECCC--CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC---------
Q 002234 722 GEMLYSGSLDKTARVWSIGN--EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS--------- 790 (949)
Q Consensus 722 g~~L~Sgs~Dg~I~vWd~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~--------- 790 (949)
.++++++.||++++|++.. +....+. .+. .+... .|+|||+.++.. .++.+.+|+..
T Consensus 215 -~l~~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~~~-------~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~ 282 (1045)
T 1k32_A 215 -RIYFITDIDGFGQIYSTDLDGKDLRKHT--SFT-DYYPR-------HLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 282 (1045)
T ss_dssp -EEEEEECTTSSCEEEEEETTSCSCEECC--CCC-SSCEE-------EEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred -EEEEEEeccCceEEEEEeCCCCcceEec--CCC-Cccee-------eEcCCCCEEEEE-eCCEEEEecCCceEeeeecc
Confidence 6777888889999998653 2222222 111 23333 499999988887 58888888631
Q ss_pred -------------CCceEEEEe-CC--EEEEEECCCcEEEEECCCCceeeeecccccccCCCC-CEEEEEEeCCceEEEE
Q 002234 791 -------------KYPKCLALV-QG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHNGLVYTAS 853 (949)
Q Consensus 791 -------------~~v~~v~~~-~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s 853 (949)
..+.+++|+ ++ .+++++ ++.|.+|+..++... .+..|.. .+..++|+ ++..++.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-------KVPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-------ECSCCSCEEEEEECSS-SEEEEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-------EccCCCcceEEeeeEc-CCCeEEE
Confidence 147889998 63 466666 889999999887653 3445666 89999999 9999998
Q ss_pred EECCCCEEE-EEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 854 TSLDGAAVK-MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 854 ~s~Dg~~I~-iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
++.++ .+. +||+.++.......+...+..++|+|| .+++++.++.|++||+.+++....+ .+|.+.+.+++||||
T Consensus 354 ~s~~~-~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 354 GTREG-DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDN 431 (1045)
T ss_dssp EETTE-EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTT
T ss_pred EECCC-ceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cCCCCCccceEECCC
Confidence 88764 888 999988766544446678999999999 7999999999999999999877776 478889999999999
Q ss_pred CCEEEEEeCCC----------cEEEEeCC
Q 002234 931 EEFLVIGTSDG----------RIQAWGLS 949 (949)
Q Consensus 931 g~~L~sgs~Dg----------~I~iWdl~ 949 (949)
|++|++++.++ .|++||++
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99999887654 89999974
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.78 E-value=5.3e-17 Score=207.83 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=209.7
Q ss_pred CCeEEEecC--CceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEE
Q 002234 650 SSADFWNHR--ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY 726 (949)
Q Consensus 650 g~I~vWd~~--~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~ 726 (949)
...++|... .....+.+|.+.+.++.|+++ ++++++.||+++||++.... .....+..|. .+...+|+|||++|+
T Consensus 183 ~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~SpDG~~la 260 (1045)
T 1k32_A 183 TRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNTDGRRIL 260 (1045)
T ss_dssp TCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEESSSCEE
T ss_pred CcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC-CcceEecCCC-CcceeeEcCCCCEEE
Confidence 456677533 233445899999999999998 66677889999999876321 2445566665 466789999999998
Q ss_pred EEeCCCcEEEEECCCCeeEEEEeec---------CCCceeeeeeccceEEEE-eCCCEEEEEEecCeEEEecCC------
Q 002234 727 SGSLDKTARVWSIGNEEIHCVQVHD---------IKDQIQNLAVSNSILCFI-PQGAGIKVHLRNGKTKLLNSS------ 790 (949)
Q Consensus 727 Sgs~Dg~I~vWd~~~~~~~~~~~~~---------~~~~v~~l~~~~~~~~fs-p~g~~l~~~~~~g~i~~~~~~------ 790 (949)
+++ ++.|.+||+..+....+.... +...+.++. |+ |||+.+++.. ++.+.+|+..
T Consensus 261 ~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~-------~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 261 FSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED-------FSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp EEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE-------EEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred EEe-CCEEEEecCCceEeeeeccCcccccccccccccccceee-------ecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 874 899999999654332111100 112344444 99 9999988877 7777777643
Q ss_pred -----C-CceEEEEeCC-EEEEEECCCcEE-EEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 791 -----K-YPKCLALVQG-KVYCGCQDGAIQ-EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 791 -----~-~v~~v~~~~~-~l~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
. .+..+.|+++ .++.++.++.+. +||+.++... .+.+|...+..++|+|++.++++++.++ .|+
T Consensus 332 ~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-------~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~ 403 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-------KFEENLGNVFAMGVDRNGKFAVVANDRF-EIM 403 (1045)
T ss_dssp CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCCCCSEEEEEECTTSSEEEEEETTS-EEE
T ss_pred ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-------EecCCccceeeeEECCCCCEEEEECCCC-eEE
Confidence 2 3455666632 478888888888 9999887653 2336778899999999999999999886 999
Q ss_pred EEECCCCeeEEee-cCCCcEEEEEEcCC--EEEEEECC----------CeEEEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 863 MWSTSNYNMVGSL-PTLSEVRAMVVSSE--LVYLGCKG----------GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 863 iwd~~~~~~~~~~-~~~~~v~~l~~s~d--~l~sgs~d----------g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
+||+.+++..... .+...+.+++|+|| ++++++.+ +.|++||+.+++ +..+ ..|...+..++|+|
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDA 481 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECT
T ss_pred EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe-eCCCcccCCceEcC
Confidence 9999999888777 46778899999999 67776654 499999999987 5566 46777899999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 002234 930 NEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 930 dg~~L~sgs~Dg~I~iWdl 948 (949)
||++|++++.++...+|+.
T Consensus 482 dG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TSCEEEEEESCCCCCEECS
T ss_pred CCCEEEEEecccCCcCcch
Confidence 9999999999888888864
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.77 E-value=1.4e-17 Score=205.27 Aligned_cols=261 Identities=7% Similarity=0.018 Sum_probs=194.8
Q ss_pred CCceEEEEEeCC--EEEEEeC-CC-----cEEEEecCCCceeeeEEecccC------------------------CCEEE
Q 002234 668 NGKVLSIACFRD--KIFSGHS-DG-----TIKVWTGRGSILHLIQQIREHT------------------------KAVTG 715 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~-Dg-----~I~vWd~~t~~~~~i~~l~~H~------------------------~~V~~ 715 (949)
...|.+++|||| +|++++. || +|++||+.++ +....+..|. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 567999999997 8999888 88 9999999998 4444444443 23889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC---eeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCC
Q 002234 716 LAILQSGEMLYSGSLDKTARVWSIGNE---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 792 (949)
Q Consensus 716 v~fspdg~~L~Sgs~Dg~I~vWd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~ 792 (949)
++|+|||++|++++. ++|++||+.++ .... ...+...+..+. |+|||+.++... ++.+.+|+..+.
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~-------~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAK-------LSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEE-------ECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCccccccc-------CCCCCCEEEEEe-CCcEEEEecCCC
Confidence 999999999999987 89999999987 4332 223345566666 999999988876 568888874321
Q ss_pred ----------------------------ceEEEEeC--CEEEEEECCC--------------------------------
Q 002234 793 ----------------------------PKCLALVQ--GKVYCGCQDG-------------------------------- 810 (949)
Q Consensus 793 ----------------------------v~~v~~~~--~~l~sgs~Dg-------------------------------- 810 (949)
+..+.|++ ..|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 36688886 3488877665
Q ss_pred -cEEEEECCC-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEEC----CCCEEEEEECCCCeeEEeecCC--C---
Q 002234 811 -AIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL----DGAAVKMWSTSNYNMVGSLPTL--S--- 879 (949)
Q Consensus 811 -~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----Dg~~I~iwd~~~~~~~~~~~~~--~--- 879 (949)
.|.+||+.+ ++....... ..|...+..++| ||+.+++..+. ++..|.+||+.+++....+... .
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred eEEEEEECCCCCceEEecCC----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 788999988 776532211 246778999999 99998887654 1248999999999877766532 2
Q ss_pred cEEEEEEcCC--EEEEEECCCeEEEEECC-CCcEEEEeccccccceeEE-EEeCCCCEEEE-EeCCC--cEEEEeC
Q 002234 880 EVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIRIETLQTGTSGKVQCM-ALDDNEEFLVI-GTSDG--RIQAWGL 948 (949)
Q Consensus 880 ~v~~l~~s~d--~l~sgs~dg~I~vwd~~-~~~~~~~l~~~h~~~I~~l-~~spdg~~L~s-gs~Dg--~I~iWdl 948 (949)
.+..++|+|| ++++++.||.++||.++ ++. ...+ ..|...|..+ .|+|||+.|+. ++.|+ .+++|++
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 3468899998 68888889988888765 344 6666 4666778887 59999997754 55555 8999985
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=3.1e-17 Score=176.46 Aligned_cols=218 Identities=13% Similarity=0.070 Sum_probs=158.4
Q ss_pred EEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEEEeecCCCceeeeee
Q 002234 683 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQNLAV 761 (949)
Q Consensus 683 sgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~-~~~~~~~~~~~~~~v~~l~~ 761 (949)
+++.|++|++||+.++ +.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++............+.++.
T Consensus 17 ~~~~~~~i~~~d~~~~--~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~- 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG- 91 (297)
T ss_dssp -CCCCEEEEEEETTTT--EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE-
T ss_pred CCCcceeEEEEeCCCC--cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE-
Confidence 4567899999999998 333 5556899999999999999999987 78999999998 7544333222234555665
Q ss_pred ccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE--CC--CcEEEEECCCCceeeeecccccccCCCC
Q 002234 762 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC--QD--GAIQEIDLATGTFATIQTGHRKLLGKAN 837 (949)
Q Consensus 762 ~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs--~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~ 837 (949)
|+|+|+.+ ++++ .+ ..|..||..++... .+..+ .
T Consensus 92 ------~spdg~~l----------------------------~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~-~ 129 (297)
T 2ojh_A 92 ------ISPDGALY----------------------------AISDKVEFGKSAIYLLPSTGGTPR-------LMTKN-L 129 (297)
T ss_dssp ------ECTTSSEE----------------------------EEEECTTTSSCEEEEEETTCCCCE-------ECCSS-S
T ss_pred ------ECCCCCEE----------------------------EEEEeCCCCcceEEEEECCCCceE-------EeecC-C
Confidence 89999864 4444 22 34445555555432 22222 3
Q ss_pred CEEEEEEeCCceEEE-EEECCCCEEEEEEC--CCCeeEEeecCCCcEEEEEEcCC--EEEEEE-CCCeEEEEECC-CCcE
Q 002234 838 PVHALQVHNGLVYTA-STSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK-RQIR 910 (949)
Q Consensus 838 ~V~~l~~~~~~~~l~-s~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~-~~~~ 910 (949)
.+..++|+|++.+++ +++.++ .+++|++ .++.......+...+.++.|+|+ .++.++ .++.+++|++. .+..
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQ-VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETT-EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CccceEECCCCCEEEEEECCCC-ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 588999999998877 566665 8999985 44554444446788999999998 566555 58999999986 4555
Q ss_pred EEEeccccccceeEEEEeCCCCEEEEEeCC-----------CcEEEEeCC
Q 002234 911 IETLQTGTSGKVQCMALDDNEEFLVIGTSD-----------GRIQAWGLS 949 (949)
Q Consensus 911 ~~~l~~~h~~~I~~l~~spdg~~L~sgs~D-----------g~I~iWdl~ 949 (949)
+..+ ..|...+..++|+|||++|++++.+ +.|++||++
T Consensus 209 ~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 209 VERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred cEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 6666 4677789999999999999988876 569999873
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.76 E-value=3.7e-17 Score=195.68 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=188.9
Q ss_pred HHHHHHhhHhhhccccccccccEEEEecC-CCCeEEEecCC-ceeeecCCC-CceEEEEEeCC-EEEEEeC---CCcEEE
Q 002234 620 MKDIMKGLRELRKYSPLAFEMVKVLSNGH-DSSADFWNHRE-LVHVDSSEN-GKVLSIACFRD-KIFSGHS---DGTIKV 692 (949)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~I~vWd~~~-~~~~~~~h~-~~V~~l~~s~d-~lasgs~---Dg~I~v 692 (949)
++...+.+...+....+++||++|++++. ||+++||+... ....+..|. ..+.+++|+|| .+++++. +...++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 13 VRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEE
T ss_pred HHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEE
Confidence 33333334444566778899999999887 99999999863 223344444 68999999999 6666664 455667
Q ss_pred EecCC--CceeeeEEecccCCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEE
Q 002234 693 WTGRG--SILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 768 (949)
Q Consensus 693 Wd~~t--~~~~~i~~l~~H~~~V~~v~fspdg~--~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~f 768 (949)
|.+.. .. ... .+..+. .+...+|+|||+ .+++++.|+ +.+||+.+++...+.... . .++. |
T Consensus 93 ~~~~~~~~g-~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~--~--~~~~-------~ 157 (582)
T 3o4h_A 93 FKVNTSRPG-EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP--G--FGFV-------S 157 (582)
T ss_dssp EEEETTSTT-CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES--S--CEEE-------E
T ss_pred EEEeccCCC-ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC--C--ceEE-------E
Confidence 65543 21 112 333222 344668888875 344455554 559999998654444322 1 3443 9
Q ss_pred EeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCc
Q 002234 769 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 848 (949)
Q Consensus 769 sp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 848 (949)
+|||+.++....++ +..+.|++||+.+++.. .+.+|...+..++|+||+
T Consensus 158 spDG~~la~~~~~~------------------------~~~~~i~~~d~~~g~~~-------~l~~~~~~~~~~~~SpDG 206 (582)
T 3o4h_A 158 DIRGDLIAGLGFFG------------------------GGRVSLFTSNLSSGGLR-------VFDSGEGSFSSASISPGM 206 (582)
T ss_dssp EEETTEEEEEEEEE------------------------TTEEEEEEEETTTCCCE-------EECCSSCEEEEEEECTTS
T ss_pred CCCCCEEEEEEEcC------------------------CCCeEEEEEcCCCCCce-------EeecCCCccccceECCCC
Confidence 99999754332221 01167999999988764 445677889999999999
Q ss_pred eEEEEEECCC-CEEEEEECCCCeeEEeec-CCCcEEEEE--------EcCC--EEEEEECCCeEEEEECCCCcEEEEecc
Q 002234 849 VYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMV--------VSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 849 ~~l~s~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~--------~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~ 916 (949)
.+++++..++ ..|.+||+.+++.. .+. +...+..+. |+|| .+++++.+|++++|++ ++....
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--- 280 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--- 280 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---
T ss_pred CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---
Confidence 9999666553 28999999998877 544 455565566 9999 6788899999999999 665442
Q ss_pred ccccceeEEEEeCCCCEEEEEeCCCc---EEEEeC
Q 002234 917 GTSGKVQCMALDDNEEFLVIGTSDGR---IQAWGL 948 (949)
Q Consensus 917 ~h~~~I~~l~~spdg~~L~sgs~Dg~---I~iWdl 948 (949)
+.+.|.+++|+ ||+++++++.+.+ |.+||.
T Consensus 281 -~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 281 -PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp -CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred -CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 33578999999 9999999888754 666664
No 148
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.76 E-value=4.7e-19 Score=150.48 Aligned_cols=76 Identities=45% Similarity=0.834 Sum_probs=70.4
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
..+++++|.||||+++|.|||+++|||+||+.||.+|+..++..||.||+.+....+. ||..|+++|+.|+++++.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~-~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT-PNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE-ECTTTHHHHHHHHHHSCC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc-cCHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999999999999999987677999999999988885 999999999999998864
No 149
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.76 E-value=5.1e-19 Score=171.47 Aligned_cols=77 Identities=26% Similarity=0.432 Sum_probs=70.9
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 89 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 89 (949)
...+|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+++++...++ ||..|+++|+.|+..++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~-pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI-PNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHCTTC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc-chHHHHHHHHHHHHHCCCc
Confidence 3568999999999999999999999999999999999987544799999999998996 9999999999999999764
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.76 E-value=4.7e-16 Score=172.62 Aligned_cols=241 Identities=10% Similarity=0.097 Sum_probs=173.4
Q ss_pred CCceEEEEEeCC--EEEEEeC-------CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEE-EEeCCCcEEEE
Q 002234 668 NGKVLSIACFRD--KIFSGHS-------DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVW 737 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~-------Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~-Sgs~Dg~I~vW 737 (949)
...+..++|+|+ ++++++. +++|.+||..++ +.+..+.. ...+..++|+|+|++++ +...++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 456789999996 6666663 578999999998 66666653 44578899999999555 55558999999
Q ss_pred ECCCCeeEEEEeecCCCc-eeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE--CCCcEEE
Q 002234 738 SIGNEEIHCVQVHDIKDQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC--QDGAIQE 814 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs--~Dg~I~i 814 (949)
|..+++............ -..-...+..+.|+|+|+. +++++ .++.|.+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----------------------------l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT----------------------------VYISGIGKESVIWV 168 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE----------------------------EEEEEESSSCEEEE
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE----------------------------EEEEecCCCceEEE
Confidence 999986322222111110 0000001122348888775 33333 4788999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-----CCcEEEEEEcCC
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-----LSEVRAMVVSSE 889 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~d 889 (949)
||..+++.... +..+...+..++|+|++.+++.++.++ .|.+||..+++....+.. ...+..++|+|+
T Consensus 169 ~d~~~~~~~~~------~~~~~~~~~~~~~s~dg~~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 169 VDGGNIKLKTA------IQNTGKMSTGLALDSEGKRLYTTNADG-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp EETTTTEEEEE------ECCCCTTCCCCEEETTTTEEEEECTTS-EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred EcCCCCceEEE------ecCCCCccceEEECCCCCEEEEEcCCC-eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 99999887643 333445578899999999888888875 999999999998877763 345788999988
Q ss_pred --EEEEEEC-CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 002234 890 --LVYLGCK-GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 890 --~l~sgs~-dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl~ 949 (949)
++++++. ++.|.+||..+++.+..+..++ ...++|+|||+++++++ .++.|.+||+.
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 5666654 5999999999999888886433 36799999999766555 68999999973
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=9.4e-16 Score=171.47 Aligned_cols=278 Identities=11% Similarity=0.127 Sum_probs=178.8
Q ss_pred ccEEEEe----cCCCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEeCC----CcEEEEecCC--Cceeee
Q 002234 640 MVKVLSN----GHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSD----GTIKVWTGRG--SILHLI 703 (949)
Q Consensus 640 ~~~l~s~----s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs~D----g~I~vWd~~t--~~~~~i 703 (949)
..+++.| +.++.|.+|.++. .......|...+..++|+|+ +|++++.+ |.|.+|++.. +....+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 3455555 3467899997641 11111127788889999997 78888875 8999998865 654556
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCe-eEEE---EeecCCCce--eeeeeccceEEEEeCCCEEE
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE-IHCV---QVHDIKDQI--QNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~~~~-~~~~---~~~~~~~~v--~~l~~~~~~~~fsp~g~~l~ 776 (949)
.....+......+++ ++++|++++ .+++|.+|++.... .... .......+. ......+..++|+|+|+.+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l- 169 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL- 169 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE-
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE-
Confidence 666556667788888 888777776 58899999997542 1110 011100000 0000001123477777653
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce------eeee-cccccccCCCCCEEEEEEeCCce
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF------ATIQ-TGHRKLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~------~~~~-~~~~~~~~h~~~V~~l~~~~~~~ 849 (949)
++++..++.|.+|++..... +... ........+...+..++|+|++.
T Consensus 170 --------------------------~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 170 --------------------------LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp --------------------------EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred --------------------------EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 33344578999998875442 1110 00011223345678999999999
Q ss_pred EEEEEECCCCEEEEEECCCCee--EEeec----CCCcEEEEEEcCC--EEEEEEC--CCeEEEEECC--CCc--EEEEec
Q 002234 850 YTASTSLDGAAVKMWSTSNYNM--VGSLP----TLSEVRAMVVSSE--LVYLGCK--GGTVEIWDQK--RQI--RIETLQ 915 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~~--~~~~~----~~~~v~~l~~s~d--~l~sgs~--dg~I~vwd~~--~~~--~~~~l~ 915 (949)
+++..+..++.|.+||+.++.. +..+. +......++|+|| +++++.. ++.|.+|++. +++ .+..+.
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 8877775445999999987754 22222 2355789999999 6766665 4899999985 444 444453
Q ss_pred cccccceeEEEEeCCCCEEEEEe-CCCcEEEEeC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl 948 (949)
. ...+..++|+|||++|++++ .++.|.+|++
T Consensus 304 ~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 304 T--GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp C--SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred C--CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 2 45788999999999998887 6799999765
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.75 E-value=1.7e-16 Score=174.97 Aligned_cols=223 Identities=9% Similarity=0.060 Sum_probs=162.6
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceee
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQN 758 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~ 758 (949)
.+++++.+++|++||..++ +.+..+..+...+ .++|+|+|+++++++. ++.|.+||..+++........+..+..+
T Consensus 12 ~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 6888889999999999999 5666666666667 9999999997776665 8999999999886422222222333332
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC-C--cEEEEECCCCceeeeecccccccCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD-G--AIQEIDLATGTFATIQTGHRKLLGK 835 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D-g--~I~iwd~~~~~~~~~~~~~~~~~~h 835 (949)
+. |+|+|+. ++++..+ + .|.+||+.+++...... +
T Consensus 89 ~~-------~s~dg~~----------------------------l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~ 126 (331)
T 3u4y_A 89 VD-------ITPDDQF----------------------------AVTVTGLNHPFNMQSYSFLKNKFISTIP-------I 126 (331)
T ss_dssp EE-------ECTTSSE----------------------------EEECCCSSSSCEEEEEETTTTEEEEEEE-------C
T ss_pred eE-------ECCCCCE----------------------------EEEecCCCCcccEEEEECCCCCeEEEEE-------C
Confidence 44 8888886 4433333 2 89999999988764322 2
Q ss_pred CCCEEEEEEeCCceEEEEEECCCCE-EEEEECCCCeeE-----EeecCCCcEEEEEEcCC--EEEEEE-CCCeEEEEECC
Q 002234 836 ANPVHALQVHNGLVYTASTSLDGAA-VKMWSTSNYNMV-----GSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK 906 (949)
Q Consensus 836 ~~~V~~l~~~~~~~~l~s~s~Dg~~-I~iwd~~~~~~~-----~~~~~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~ 906 (949)
......++|+|++.+++.++.+++. |.+|++.....+ ..+.....+..++|+|| ++++++ .++.|++||+.
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 3456899999999755555444336 999998754332 23345667899999998 455554 68999999999
Q ss_pred CCcE---EEEeccccccceeEEEEeCCCCEEEEEe-CCCcEEEEeCC
Q 002234 907 RQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 907 ~~~~---~~~l~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I~iWdl~ 949 (949)
+++. +..+. +...+..++|+|||++++.++ .++.|.+||+.
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 207 NPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp STTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 9988 77774 335789999999999776665 57889999963
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=1.8e-16 Score=181.98 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=148.3
Q ss_pred ccccccccccEEEEecCCCCeEEEecCCce-----------------eeecCCCCceEEEEEeCC--EEE----EEeCCC
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHRELV-----------------HVDSSENGKVLSIACFRD--KIF----SGHSDG 688 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~~~-----------------~~~~~h~~~V~~l~~s~d--~la----sgs~Dg 688 (949)
....++.++.++++++.|+ +++|+..... .....|.+.|++++|+|+ +|+ +|+.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3445666788899999888 8898754110 012245678999999996 777 788999
Q ss_pred cEEEEecCCC-----c----eeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceee
Q 002234 689 TIKVWTGRGS-----I----LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 758 (949)
Q Consensus 689 ~I~vWd~~t~-----~----~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~ 758 (949)
+|+|||+.++ . ...+..+.+|.+.|++++|+|+ +++|++++.||+|++||++++. .......|...+.+
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCEEE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCceeE
Confidence 9999998754 1 1135667789999999999997 8999999999999999999884 23334456677888
Q ss_pred eeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccccccc-CCCC
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-GKAN 837 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~ 837 (949)
+. |+|+|+. |++|+.||+|++||++ ++.......+.... .|..
T Consensus 198 v~-------wspdg~~----------------------------lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 198 VC-------WSPKGKQ----------------------------LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPV 241 (434)
T ss_dssp EE-------ECTTSSC----------------------------EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred EE-------EcCCCCE----------------------------EEEEcCCCcEEEEccC-CcccccccCCcccCCCCce
Confidence 77 8888875 8889999999999998 55443333222111 3455
Q ss_pred CEEEEEEeCCceEEEEEEC-CC-----CEEEEEECCCC
Q 002234 838 PVHALQVHNGLVYTASTSL-DG-----AAVKMWSTSNY 869 (949)
Q Consensus 838 ~V~~l~~~~~~~~l~s~s~-Dg-----~~I~iwd~~~~ 869 (949)
.|.++.|++++.++++.+. || ..+++|++++.
T Consensus 242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 8999999999988876543 32 24999999864
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=4.1e-16 Score=172.07 Aligned_cols=261 Identities=9% Similarity=0.108 Sum_probs=172.3
Q ss_pred cccccccccEEEEecCC-CCeEEEecC--C--c--eeeecCCCCceEEEEEeCC--EEEEEe-CCCcEEEEecCCCc-ee
Q 002234 633 YSPLAFEMVKVLSNGHD-SSADFWNHR--E--L--VHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRGSI-LH 701 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~d-g~I~vWd~~--~--~--~~~~~~h~~~V~~l~~s~d--~lasgs-~Dg~I~vWd~~t~~-~~ 701 (949)
...+++++.++++++.+ +.|.+|++. + . ...... .+.+..++|+|+ ++++++ .++.|.+||+..+. ..
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence 45567789988888876 999999986 2 1 122223 338899999997 565555 58899999994331 14
Q ss_pred eeEEecccCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeeEEEE----eecCCCceeeeeeccceEEEEeCCCEE
Q 002234 702 LIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGN-EEIHCVQ----VHDIKDQIQNLAVSNSILCFIPQGAGI 775 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~~-~~~~~~~----~~~~~~~v~~l~~~~~~~~fsp~g~~l 775 (949)
.+..+..+ ..+.+++|+|+|+++++++ .|+.|++||+.+ ++..... .......+..+. |+|+|+.+
T Consensus 121 ~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~pdg~~l 192 (343)
T 1ri6_A 121 VVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV-------FHPNEQYA 192 (343)
T ss_dssp EEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE-------ECTTSSEE
T ss_pred ccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE-------ECCCCCEE
Confidence 55555444 4589999999999888887 899999999987 6433222 111222344444 77777752
Q ss_pred EEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC--Cceeeeeccccccc---CCCCCEEEEEEeCCceE
Q 002234 776 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLL---GKANPVHALQVHNGLVY 850 (949)
Q Consensus 776 ~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~ 850 (949)
++++..++.|.+||+.. +........ ..+. .....+..++|+|++.+
T Consensus 193 ---------------------------~~~~~~~~~i~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 193 ---------------------------YCVNELNSSVDVWELKDPHGNIECVQTL-DMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp ---------------------------EEEETTTTEEEEEESSCTTSCCEEEEEE-ECSCTTCCSCCCEEEEEECTTSSE
T ss_pred ---------------------------EEEeCCCCEEEEEEecCCCCcEEEEeec-cccCccccccCCccceEECCCCCE
Confidence 33445788999999953 433211110 1111 12346778999999987
Q ss_pred EEEEECCCCEEEEEECC----CCeeEEeecCCCcEEEEEEcCC--EEEEEE-CCCeEEEE--ECCCCc--EEEEeccccc
Q 002234 851 TASTSLDGAAVKMWSTS----NYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW--DQKRQI--RIETLQTGTS 919 (949)
Q Consensus 851 l~s~s~Dg~~I~iwd~~----~~~~~~~~~~~~~v~~l~~s~d--~l~sgs-~dg~I~vw--d~~~~~--~~~~l~~~h~ 919 (949)
++.+...++.|.+||+. +.+.+..+.....+..++|+|+ ++++++ .++.|.+| |..+++ .+..+.. .
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g 322 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--G 322 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--S
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--C
Confidence 77555433599999998 3345555655455889999998 677776 68999999 545664 3444432 2
Q ss_pred cceeEEEEeCCCC
Q 002234 920 GKVQCMALDDNEE 932 (949)
Q Consensus 920 ~~I~~l~~spdg~ 932 (949)
....+++|.|+.+
T Consensus 323 ~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 323 QGPMWVVVNAHEG 335 (343)
T ss_dssp SSCCEEEEEEEC-
T ss_pred CCCeeEEEEcccC
Confidence 4577888887654
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=1.3e-16 Score=176.88 Aligned_cols=244 Identities=10% Similarity=0.031 Sum_probs=164.3
Q ss_pred EEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccC-CCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEEEe
Q 002234 674 IACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQV 749 (949)
Q Consensus 674 l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V~~v~fspdg~~L~-Sgs~Dg~I~vWd~~~~~~~~~~~ 749 (949)
++++++ ++++++.+++|++||..++ +.+..+..+. ..+..++|+|+|++++ +++.++.|.+||+.+++......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 455554 8889999999999999998 6676765443 2578899999998654 55678999999999986332222
Q ss_pred ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccc
Q 002234 750 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH 829 (949)
Q Consensus 750 ~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 829 (949)
..+. + ......+..+.|+|+|+.+++...+... . .. .-+..++.|.+||+.+++.....
T Consensus 83 ~~~~-~-~~~~~~~~~~~~spdg~~l~~~~~~~~~--~------------~~--~~~~~~~~i~~~d~~~~~~~~~~--- 141 (349)
T 1jmx_B 83 LSSV-P-GEVGRSMYSFAISPDGKEVYATVNPTQR--L------------ND--HYVVKPPRLEVFSTADGLEAKPV--- 141 (349)
T ss_dssp SCCS-T-TEEEECSSCEEECTTSSEEEEEEEEEEE--C------------SS--CEEECCCEEEEEEGGGGGGBCCS---
T ss_pred cccc-c-ccccccccceEECCCCCEEEEEcccccc--c------------cc--ccccCCCeEEEEECCCcccccee---
Confidence 1110 0 0000112234499999876554422100 0 00 00122489999999886543211
Q ss_pred ccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCC------------------------------
Q 002234 830 RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS------------------------------ 879 (949)
Q Consensus 830 ~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~------------------------------ 879 (949)
... .+...+.+++|+|++. +..++ + .|.+||..+++....+....
T Consensus 142 ~~~-~~~~~~~~~~~s~dg~-l~~~~--~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 142 RTF-PMPRQVYLMRAADDGS-LYVAG--P-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp EEE-ECCSSCCCEEECTTSC-EEEES--S-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred eec-cCCCcccceeECCCCc-EEEcc--C-cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 111 2234588899999998 44442 2 59999999988776665221
Q ss_pred ---------------------------------------cEEEEEEcC-C--EEEEEECCCeEEEEECCCCcEEEEeccc
Q 002234 880 ---------------------------------------EVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIETLQTG 917 (949)
Q Consensus 880 ---------------------------------------~v~~l~~s~-d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 917 (949)
.+..++++| | +++++ ++.|.+||+.+++.+..+..+
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~ 294 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD 294 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC
Confidence 344566778 7 66666 889999999999988888533
Q ss_pred cccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 918 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 918 h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
..+.+++|+|||++|++++.++.|++||++
T Consensus 295 --~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 295 --HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp --SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred --CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 357899999999999989999999999973
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.73 E-value=4.2e-16 Score=190.97 Aligned_cols=259 Identities=12% Similarity=0.005 Sum_probs=185.5
Q ss_pred ccccccccccEEEEecCCCCeEEEecCCc-eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCC-----Cceeee
Q 002234 632 KYSPLAFEMVKVLSNGHDSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-----SILHLI 703 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg~I~vWd~~~~-~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t-----~~~~~i 703 (949)
....+++| .+++.+ .++.|++||..+. ...+..+.+.+.+++|||| +|++ +.|++|++||+.+ + +..
T Consensus 85 ~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g--~~~ 159 (706)
T 2z3z_A 85 FRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMS--RAI 159 (706)
T ss_dssp EEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCC--CCE
T ss_pred eeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCC--CcE
Confidence 34556677 555554 4599999999743 3345567788999999997 7777 4789999999998 7 444
Q ss_pred EEecccCCC--------------EEEEEEecCCCEEEEEe---------------------------------CCCcEEE
Q 002234 704 QQIREHTKA--------------VTGLAILQSGEMLYSGS---------------------------------LDKTARV 736 (949)
Q Consensus 704 ~~l~~H~~~--------------V~~v~fspdg~~L~Sgs---------------------------------~Dg~I~v 736 (949)
.....+... +.++.|+|||++|++++ .+.+|++
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 433334333 48899999999999998 4578999
Q ss_pred EECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecC-----eEEEecCCCC-----------------c
Q 002234 737 WSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG-----KTKLLNSSKY-----------------P 793 (949)
Q Consensus 737 Wd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g-----~i~~~~~~~~-----------------v 793 (949)
||+.+++...+... .+...+..+. |+|||+.+++...++ .+.+|+.... +
T Consensus 240 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 240 YHLATGKTVYLQTGEPKEKFLTNLS-------WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EETTTTEEEECCCCSCTTCEEEEEE-------ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred EECCCCceEeeccCCCCceeEeeEE-------EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 99999864333222 3345566666 999999999887765 7777775332 2
Q ss_pred eEEEEeC---C-EEEEEECCCcEEEEECC-CCceeeeecccccccCCCCCEEE-EEEeCCceEEEEEECCCC----EEEE
Q 002234 794 KCLALVQ---G-KVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHA-LQVHNGLVYTASTSLDGA----AVKM 863 (949)
Q Consensus 794 ~~v~~~~---~-~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~Dg~----~I~i 863 (949)
..+.|++ + .+++++.||.+++|++. ++... ..+..|...+.. ++|+|++..++..+.+++ .|..
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI------RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE------EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEE------EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 3456764 3 47778889999999876 45544 344556677877 799999987776665543 7777
Q ss_pred EECCCCeeEEeecCCCcEEEEEEcCC--EEEEE-ECC---CeEEEEECCCCc
Q 002234 864 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG-CKG---GTVEIWDQKRQI 909 (949)
Q Consensus 864 wd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sg-s~d---g~I~vwd~~~~~ 909 (949)
||..++. ...+.+...+.+++|+|| +++.. +.+ +.|++||..+++
T Consensus 387 ~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 387 IDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 8887765 455567778999999998 45554 333 569999998887
No 157
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.72 E-value=6.3e-17 Score=198.81 Aligned_cols=240 Identities=8% Similarity=0.014 Sum_probs=170.0
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCC---CEEEEEEecCCCEEEEEeCC---------CcE
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSLD---------KTA 734 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~---~V~~v~fspdg~~L~Sgs~D---------g~I 734 (949)
..+.+++|+|| ++++ +.||+|++||+.++ +....+.+|.. .|.+++|||||++|++++.+ +.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 34678899997 5555 78999999999999 56666776765 49999999999999999875 778
Q ss_pred EEEECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEE
Q 002234 735 RVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 813 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~ 813 (949)
.+||+.+++...+... .+...+..+. |+|||+. ++.++. +.|+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~-------~SPdG~~----------------------------la~~~~-~~i~ 137 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAG-------WGPKGQQ----------------------------LIFIFE-NNIY 137 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCC-------BCSSTTC----------------------------EEEEET-TEEE
T ss_pred EEEECCCCceEeccCCccccccccccE-------ECCCCCE----------------------------EEEEEC-CeEE
Confidence 8999999864333222 1222355555 9999986 444443 6889
Q ss_pred EEECCCCceeeeeccccc---ccCCC---------CCEEEEEEeCCceEEEEEECCC-----------------------
Q 002234 814 EIDLATGTFATIQTGHRK---LLGKA---------NPVHALQVHNGLVYTASTSLDG----------------------- 858 (949)
Q Consensus 814 iwd~~~~~~~~~~~~~~~---~~~h~---------~~V~~l~~~~~~~~l~s~s~Dg----------------------- 858 (949)
+||+.+++.......... +.++. ..+.+++|+||+.+++.++.|+
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 999888776543321100 01111 1347899999999998887542
Q ss_pred ----------CEEEEEECCCCeeEEeecC-------CCcEEEEEEcCC--EEEEEEC----CCeEEEEECCCCcEEEEec
Q 002234 859 ----------AAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSSE--LVYLGCK----GGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 859 ----------~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~d--~l~sgs~----dg~I~vwd~~~~~~~~~l~ 915 (949)
..|++||+.+++....+.. ...+..++|+|| .+++.+. ++.|++||+.+++....+.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 1799999998876555542 457899999999 4545432 3589999999998777664
Q ss_pred ccccccee----EEEEeCCCCEEEE--EeCCC------cEEEEe
Q 002234 916 TGTSGKVQ----CMALDDNEEFLVI--GTSDG------RIQAWG 947 (949)
Q Consensus 916 ~~h~~~I~----~l~~spdg~~L~s--gs~Dg------~I~iWd 947 (949)
..+.+.+. .++|||||+.|+. +..|| .|.+||
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 34444443 8899999997765 45677 566676
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=1.4e-16 Score=190.74 Aligned_cols=229 Identities=10% Similarity=0.080 Sum_probs=169.6
Q ss_pred CCceEEEEEeCC--EEEEEeC-CCcEEEEecCCCceeeeEEecccC-CCEEEEEEecCCCEEEEEeC---CCcEEEEECC
Q 002234 668 NGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSL---DKTARVWSIG 740 (949)
Q Consensus 668 ~~~V~~l~~s~d--~lasgs~-Dg~I~vWd~~t~~~~~i~~l~~H~-~~V~~v~fspdg~~L~Sgs~---Dg~I~vWd~~ 740 (949)
..+|++++|+|| .|++++. ||+++||++.++ .. ..+..|. ..|..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC--Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 567999999997 8888776 999999999777 33 4444555 68999999999 78887775 5556666553
Q ss_pred C---CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 741 N---EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 741 ~---~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
. +... .... ...... ..|+|+|+.+ +++.+.++.+.+||+
T Consensus 97 ~~~~g~~~--~l~~-~~~~~~-------~~~s~dg~~~---------------------------~~~s~~~~~~~l~d~ 139 (582)
T 3o4h_A 97 TSRPGEEQ--RLEA-VKPMRI-------LSGVDTGEAV---------------------------VFTGATEDRVALYAL 139 (582)
T ss_dssp TTSTTCCE--ECTT-SCSBEE-------EEEEECSSCE---------------------------EEEEECSSCEEEEEE
T ss_pred ccCCCccc--cccC-CCCcee-------eeeCCCCCeE---------------------------EEEecCCCCceEEEc
Confidence 3 2212 1111 112222 2388888753 334444455569999
Q ss_pred CCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC---CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEE
Q 002234 818 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVY 892 (949)
Q Consensus 818 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg---~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~ 892 (949)
.+++...... +.. .+++|+||+.++++++.++ ..|.+||+.+++......+...+..++|||| .++
T Consensus 140 ~~g~~~~l~~-------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 140 DGGGLRELAR-------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp ETTEEEEEEE-------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEE
T ss_pred cCCcEEEeec-------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEE
Confidence 9887653322 222 7899999999999877651 3799999998887654447788999999999 688
Q ss_pred EEECCC--eEEEEECCCCcEEEEeccccccceeEEE--------EeCCCCEEEEEeCCCcEEEEeC
Q 002234 893 LGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMA--------LDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 893 sgs~dg--~I~vwd~~~~~~~~~l~~~h~~~I~~l~--------~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++..++ .|++||+.+++.. .+ .+|...+..++ |+|||.++++++.||++++|++
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 778888 8999999999877 55 57777788788 9999999999999999999985
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.70 E-value=2.7e-16 Score=180.62 Aligned_cols=210 Identities=11% Similarity=0.122 Sum_probs=148.7
Q ss_pred CCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCc---------ee-----eeEEecccCCCE
Q 002234 650 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI---------LH-----LIQQIREHTKAV 713 (949)
Q Consensus 650 g~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~---------~~-----~i~~l~~H~~~V 713 (949)
+.+++|+.... .+...+..++++++ ++++++.|| +++|+..... .. ....+ .|...|
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 95 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPI 95 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCE
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcc
Confidence 46888875421 23456888999985 899999888 9998753210 00 11112 366789
Q ss_pred EEEEEecCCCEEE----EEeCCCcEEEEECCCC-----e----eEEEE-eecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 714 TGLAILQSGEMLY----SGSLDKTARVWSIGNE-----E----IHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 714 ~~v~fspdg~~L~----Sgs~Dg~I~vWd~~~~-----~----~~~~~-~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
++++|+|+|++|+ +|+.|++|++||+.++ + ..... ...|...|.++. |+|++.
T Consensus 96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-------~~p~~~------ 162 (434)
T 2oit_A 96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK-------WNPTVP------ 162 (434)
T ss_dssp EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE-------ECSSCT------
T ss_pred cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE-------ECCCCC------
Confidence 9999999999999 8889999999998764 1 01111 123455566655 666521
Q ss_pred ecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCC
Q 002234 780 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 859 (949)
Q Consensus 780 ~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~ 859 (949)
..+++++.||+|++||++++... ....+|...|++++|+|++.++++++.||
T Consensus 163 ---------------------~~las~s~Dg~v~iwD~~~~~~~------~~~~~~~~~v~~v~wspdg~~lasgs~dg- 214 (434)
T 2oit_A 163 ---------------------SMVAVCLADGSIAVLQVTETVKV------CATLPSTVAVTSVCWSPKGKQLAVGKQNG- 214 (434)
T ss_dssp ---------------------TEEEEEETTSCEEEEEESSSEEE------EEEECGGGCEEEEEECTTSSCEEEEETTS-
T ss_pred ---------------------CEEEEEECCCeEEEEEcCCCcce------eeccCCCCceeEEEEcCCCCEEEEEcCCC-
Confidence 24889999999999999988554 23446788999999999999999999997
Q ss_pred EEEEEECCCCeeEEeec-C-------CCcEEEEEEcCC--EEE-EEECCC------eEEEEECCCC
Q 002234 860 AVKMWSTSNYNMVGSLP-T-------LSEVRAMVVSSE--LVY-LGCKGG------TVEIWDQKRQ 908 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~-~-------~~~v~~l~~s~d--~l~-sgs~dg------~I~vwd~~~~ 908 (949)
+|++||++ ++....+. + ...+.++.|+++ +++ .++.+| .+++||+.+.
T Consensus 215 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 215 TVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999998 55555443 1 127899999988 332 244443 3899999764
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.70 E-value=1.1e-15 Score=169.12 Aligned_cols=261 Identities=10% Similarity=0.031 Sum_probs=179.8
Q ss_pred cccccccEEEEecCCCCeEEEecCCc--eeeecCCC-CceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecc
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHREL--VHVDSSEN-GKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIRE 708 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~-~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~ 708 (949)
.+..++..+++++.+++|.+||..+. ......+. ..+..++|+|+ .++++..++.|.+||+.++ +.+..+..
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~ 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANL 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEES
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEc
Confidence 34567788999999999999998743 33333222 36789999996 4456667899999999998 56655543
Q ss_pred c------CCCEEEEEEecCCCEEEEEeCC------------CcEEEEECCCCee-EEEEeecCCCceeeeeeccceEEEE
Q 002234 709 H------TKAVTGLAILQSGEMLYSGSLD------------KTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFI 769 (949)
Q Consensus 709 H------~~~V~~v~fspdg~~L~Sgs~D------------g~I~vWd~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~fs 769 (949)
+ ...+..++|+|||+++++++.+ +.|.+||+.+++. .......+...+.++. |+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~s 156 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR-------AA 156 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE-------EC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee-------EC
Confidence 2 2347889999999999999865 8999999988541 2222222333455555 99
Q ss_pred eCCCEEEEEEecCeEEEecCCCCc--eEEEEeC---------------------C---EE--EEEECC-----------C
Q 002234 770 PQGAGIKVHLRNGKTKLLNSSKYP--KCLALVQ---------------------G---KV--YCGCQD-----------G 810 (949)
Q Consensus 770 p~g~~l~~~~~~g~i~~~~~~~~v--~~v~~~~---------------------~---~l--~sgs~D-----------g 810 (949)
|+|+ +.+. ++.+.+|+....- ..+.... . .. +.-+.| .
T Consensus 157 ~dg~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 9999 5553 4458888864332 2221110 0 00 001111 1
Q ss_pred cEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 889 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d 889 (949)
.+..+|..+++.... .+..+...+..++++| ++.+++++ ++ .|.+||+.+++.+..+.....+.+++|+||
T Consensus 234 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 305 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQ-----EFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKK 305 (349)
T ss_dssp EEEEEETTTCCEEEE-----EEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTTTEEEEEEECSSCCCEEEECSS
T ss_pred eEEEEeccCCcEEec-----ccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECccCeEEEEEcCCCCccceEECCC
Confidence 122366666654321 1123456788999999 99888877 54 999999999999888876667889999998
Q ss_pred --EEEEEECCCeEEEEECCCCcEEEEec
Q 002234 890 --LVYLGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 890 --~l~sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
++++++.++.|++||..+++.+..+.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEecCCCeEEEEeccccceeeeee
Confidence 67778888999999999999888885
No 161
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-18 Score=147.04 Aligned_cols=74 Identities=28% Similarity=0.502 Sum_probs=65.4
Q ss_pred CCCcccCcCccccccCceecC-CCccccHHHHHHHHhcC-----CCCCCC--CCCC-CCCCCCCCccHHHHHHHHHHHHH
Q 002234 15 PPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-----NSSCPI--TRQK-LSSTKLPKTNYVLKRLIASWQEQ 85 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~-cghtfc~~ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~~n~~l~~~i~~~~~~ 85 (949)
.+++|.||||+++|+|||+++ |||+|||.||++|+..+ ...||+ |+.. +....++ ||..|+++|+.|+.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~-pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI-QDEALRRAIENHNKK 82 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE-ECHHHHHHHHHHHTT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc-CCHHHHHHHHHHHHH
Confidence 578999999999999999995 99999999999999753 358999 7766 8888885 999999999999988
Q ss_pred CCCC
Q 002234 86 NPGG 89 (949)
Q Consensus 86 ~~~~ 89 (949)
+...
T Consensus 83 ~~r~ 86 (94)
T 2yu4_A 83 RHRH 86 (94)
T ss_dssp CCSC
T ss_pred hccc
Confidence 7643
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=2.4e-15 Score=168.72 Aligned_cols=268 Identities=8% Similarity=0.074 Sum_probs=173.4
Q ss_pred EEEEecCC--CCeEEEecC--Cc-eeee----cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC-CCceeeeEEeccc
Q 002234 642 KVLSNGHD--SSADFWNHR--EL-VHVD----SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-GSILHLIQQIREH 709 (949)
Q Consensus 642 ~l~s~s~d--g~I~vWd~~--~~-~~~~----~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~-t~~~~~i~~l~~H 709 (949)
+++.|+.. +.|.+|+++ +. .... .++...+..++|+|+ +|++++.+ +|.+||+. +++...+.....+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34455443 467777653 21 1111 124457889999997 78888888 99999997 7732222222111
Q ss_pred CCCEEEEEEecCCCE--EEEEe-------------CCCcEEEEECCC-CeeE-EEEee--cCCCceeeeeeccceEEEEe
Q 002234 710 TKAVTGLAILQSGEM--LYSGS-------------LDKTARVWSIGN-EEIH-CVQVH--DIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 710 ~~~V~~v~fspdg~~--L~Sgs-------------~Dg~I~vWd~~~-~~~~-~~~~~--~~~~~v~~l~~~~~~~~fsp 770 (949)
+.+..++|+|||++ +++++ .+|++.+|++.. ++.. .+... .....+.++. |+|
T Consensus 83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~sp 154 (365)
T 1jof_A 83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV-------FDP 154 (365)
T ss_dssp -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE-------ECT
T ss_pred -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE-------ECC
Confidence 23566899999994 55553 689999999973 5422 12221 1233455554 888
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECC-CCceeeeecccccccCCCCCEEEEEEeCCc
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGL 848 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 848 (949)
||+. ++++. .++.|.+||+. +++...... .....|...+..++|+|++
T Consensus 155 dG~~----------------------------l~~~~~~~~~v~~~~~~~~g~~~~~~~--~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 155 TETY----------------------------LYSADLTANKLWTHRKLASGEVELVGS--VDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp TSSE----------------------------EEEEETTTTEEEEEEECTTSCEEEEEE--EECSSTTCCEEEEEECTTS
T ss_pred CCCE----------------------------EEEEcCCCCEEEEEEECCCCCEEEeee--EecCCCCCCCCEeEECCCC
Confidence 8875 44443 46789999998 676532211 1112245678999999999
Q ss_pred eEEEEEECCCCEEEEEECC--CCeeE------EeecCC----C-------cEEEEE-EcCC--EEEEEECC-C-----eE
Q 002234 849 VYTASTSLDGAAVKMWSTS--NYNMV------GSLPTL----S-------EVRAMV-VSSE--LVYLGCKG-G-----TV 900 (949)
Q Consensus 849 ~~l~s~s~Dg~~I~iwd~~--~~~~~------~~~~~~----~-------~v~~l~-~s~d--~l~sgs~d-g-----~I 900 (949)
.++++++..++.|.+|++. +++.. ..++.. . .+..++ |+|| ++++++.+ + +|
T Consensus 205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence 9888877655699999865 45542 222211 2 588999 9999 56666532 2 89
Q ss_pred EEEECC-CCcEEEE--eccccccceeEEEEeC---CCCEEEEEeCC-CcEEEEeC
Q 002234 901 EIWDQK-RQIRIET--LQTGTSGKVQCMALDD---NEEFLVIGTSD-GRIQAWGL 948 (949)
Q Consensus 901 ~vwd~~-~~~~~~~--l~~~h~~~I~~l~~sp---dg~~L~sgs~D-g~I~iWdl 948 (949)
.+|++. +++.... +...+...+..++|+| ||++|++++.+ ++|.+|++
T Consensus 285 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 285 AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 999996 6664432 1123445678899999 89999999865 89999986
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=193.28 Aligned_cols=302 Identities=9% Similarity=0.041 Sum_probs=192.6
Q ss_pred ccccccccEEEEecCCCCeEEEecCC--ceeeecCCCC---ceEEEEEeCC--EEEEEeC---------CCcEEEEecCC
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENG---KVLSIACFRD--KIFSGHS---------DGTIKVWTGRG 697 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~---~V~~l~~s~d--~lasgs~---------Dg~I~vWd~~t 697 (949)
..+++++.+++ .+.|++|++||..+ ......+|.. .+.+++|||| +|++++. |++|++||+.+
T Consensus 21 ~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 34566785554 45699999999874 3344444433 4899999997 7887766 79999999999
Q ss_pred Cceeee--EEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceee-e---------eeccce
Q 002234 698 SILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-L---------AVSNSI 765 (949)
Q Consensus 698 ~~~~~i--~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~-l---------~~~~~~ 765 (949)
+ +.+ ..+ ...+..++|||||+.|++++ |++|++||+.+++...+....+...+.. . ......
T Consensus 100 g--~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 100 G--EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp T--EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred C--ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 8 332 222 35688999999999999986 7899999999886433322222221210 0 000123
Q ss_pred EEEEeCCCEEEEEEec-CeEEEec-----CCC--CceEEEEeC-CEEEEEECCCcEEEEECCCCcee--eeecccccccC
Q 002234 766 LCFIPQGAGIKVHLRN-GKTKLLN-----SSK--YPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLG 834 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~-g~i~~~~-----~~~--~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~ 834 (949)
..|+|||+.++....+ +.+..|. ... .+..+.+.. +. ...+..|++||+.+++.. ........+.+
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA---KNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS---CCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC---CCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 5599999999988765 2222221 111 111122110 00 012237899999987652 11111123456
Q ss_pred CCCCEEEEEEeCCceEEEEEECCC---CEEEEEE----CCCCeeEEee-----cCCCcEE-----EEEEcCC--EEE--E
Q 002234 835 KANPVHALQVHNGLVYTASTSLDG---AAVKMWS----TSNYNMVGSL-----PTLSEVR-----AMVVSSE--LVY--L 893 (949)
Q Consensus 835 h~~~V~~l~~~~~~~~l~s~s~Dg---~~I~iwd----~~~~~~~~~~-----~~~~~v~-----~l~~s~d--~l~--s 893 (949)
|...+..++|+||+.++++....+ ..|.+|| ..+++....+ .+...+. .+.|+|| .++ +
T Consensus 251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 888899999999988777644221 2588899 8887766555 2444555 7899998 333 3
Q ss_pred EECCC--eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC-----CcEEEEeC
Q 002234 894 GCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 948 (949)
Q Consensus 894 gs~dg--~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D-----g~I~iWdl 948 (949)
+..+| .|++||..+++ ...+ ..+...+..+.++ |++.|+..+.+ +.+++|.+
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~l-t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQI-TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEEC-SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EccCCceEEEEEECCCCc-eEec-ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 44555 67778887776 4455 3455568888888 88877766655 88999975
No 164
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=8.9e-15 Score=162.46 Aligned_cols=242 Identities=11% Similarity=0.140 Sum_probs=159.2
Q ss_pred ccccccccEEEEecC---CCCeEEEecCC----ceeeecCCCCceEEEEEeCC--EEEEEe-CCCcEEEEecC-CCceee
Q 002234 634 SPLAFEMVKVLSNGH---DSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR-GSILHL 702 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~---dg~I~vWd~~~----~~~~~~~h~~~V~~l~~s~d--~lasgs-~Dg~I~vWd~~-t~~~~~ 702 (949)
..+++++. +++++. ++.|.+|+... .+.....|...+..++|+|+ +|++++ .+++|.+||+. ++....
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence 44567888 555543 68999999863 22333457788899999997 677777 78999999995 443344
Q ss_pred eEEecc---------cCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeEEEEee--cCCCceeeeeeccceEEEEe
Q 002234 703 IQQIRE---------HTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVH--DIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 703 i~~l~~---------H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~-~~~~~~~~~~--~~~~~v~~l~~~~~~~~fsp 770 (949)
+..+.. +...+.+++|+|||+++++...++.|++||+. +++....... .....+..+ +|+|
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~-------~~sp 196 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL-------VFSP 196 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE-------EECT
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE-------EECC
Confidence 444432 12348899999999977777778999999998 5543332221 112233334 4888
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC--Cceeeeeccccccc---CCCCCEEEEEEe
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLL---GKANPVHALQVH 845 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~--~~~~~~~~~~~~~~---~h~~~V~~l~~~ 845 (949)
||+.+ ++++..++.|.+|++.. ++....... .... .....+..++|+
T Consensus 197 dg~~l---------------------------~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 197 DGQYA---------------------------FLAGELSSQIASLKYDTQTGAFTQLGIV-KTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp TSSEE---------------------------EEEETTTTEEEEEEEETTTTEEEEEEEE-ESSCTTCCSCCEEEEEEEC
T ss_pred CCCEE---------------------------EEEeCCCCEEEEEEecCCCCceEEeeee-eecCCCCCCCCcceeEEEC
Confidence 88753 34455678889998774 443211110 0111 111458899999
Q ss_pred CCceEEEEEECCCCEEEEEECCC---CeeEEeec-CCCcEEEEEEcCC--EEEEEEC-CCeEEEE--ECCCCcEE
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSN---YNMVGSLP-TLSEVRAMVVSSE--LVYLGCK-GGTVEIW--DQKRQIRI 911 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~---~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~-dg~I~vw--d~~~~~~~ 911 (949)
|++.+++.....++.|.+||+.. ...+..+. +...+..++|+|| ++++++. ++.|.+| |..+++..
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99997754443334999999973 34555555 3566889999998 6777765 4899999 55666654
No 165
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.67 E-value=8e-15 Score=161.26 Aligned_cols=248 Identities=13% Similarity=0.067 Sum_probs=175.4
Q ss_pred cccccccccEE-EEecCCCCeEEEecCCc--eeeec-CC----CCceEEEEEeCC--EEEEEe------------CCCcE
Q 002234 633 YSPLAFEMVKV-LSNGHDSSADFWNHREL--VHVDS-SE----NGKVLSIACFRD--KIFSGH------------SDGTI 690 (949)
Q Consensus 633 ~~~~~~~~~~l-~s~s~dg~I~vWd~~~~--~~~~~-~h----~~~V~~l~~s~d--~lasgs------------~Dg~I 690 (949)
...+++++.++ ++++.++.|.+||..+. ...+. ++ ...+.+++|+|+ ++++++ .++.|
T Consensus 38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence 34566788655 56667899999998742 22222 22 226778999986 677775 57999
Q ss_pred EEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe
Q 002234 691 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 691 ~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp 770 (949)
.+||+.++ +.+..+.. ...+.+++|+|+|++++++ ++.|.+||+.+++.... .........+. |+|
T Consensus 118 ~v~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~~~~~~~~~~~-------~s~ 183 (337)
T 1pby_B 118 ALYDAETL--SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--KPIQSWEAETY-------AQP 183 (337)
T ss_dssp EEEETTTT--EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--ECSTTTTTTTB-------CCC
T ss_pred EEEECCCC--cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--eeccccCCCce-------eCC
Confidence 99999988 56666653 4567889999999988888 68899999999863322 21111111122 788
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC----------cEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG----------AIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
+|+.+.+....+....+ ....+..++ .|.+||+.+++.. . ..+..+...+.
T Consensus 184 dg~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~----~~~~~~~~~~~ 244 (337)
T 1pby_B 184 DVLAVWNQHESSGVMAT--------------PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M----REVRIMDVFYF 244 (337)
T ss_dssp BCCCCCCCCTTTTEEEE--------------EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E----EEEEECSSCEE
T ss_pred CccEEeeeccCCCceee--------------eeeccccccccccccccccceEEEeCCCCCce-E----eecCCCCCcee
Confidence 88765443322211100 011122222 6899999998875 2 22344566788
Q ss_pred EEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEecc
Q 002234 841 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 916 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~ 916 (949)
.++|+|++.+++++ ++ .|.+||+.+++.+..+.....+.+++|+|| ++++++.++.|++||+.+++.+..+..
T Consensus 245 ~~~~s~dg~~l~~~--~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 245 STAVNPAKTRAFGA--YN-VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEECTTSSEEEEE--ES-EEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eEEECCCCCEEEEe--CC-eEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999988887 44 999999999999888887777889999998 688888899999999999999888853
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.67 E-value=3e-14 Score=159.17 Aligned_cols=260 Identities=15% Similarity=0.156 Sum_probs=169.9
Q ss_pred cccccccccEEEEecCC----CCeEEEecCC------ceeeecCCCCceEEEEEeCCEEEEEe-CCCcEEEEecCCCc-e
Q 002234 633 YSPLAFEMVKVLSNGHD----SSADFWNHRE------LVHVDSSENGKVLSIACFRDKIFSGH-SDGTIKVWTGRGSI-L 700 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~d----g~I~vWd~~~------~~~~~~~h~~~V~~l~~s~d~lasgs-~Dg~I~vWd~~t~~-~ 700 (949)
...+++++.+|++++.+ +.|.+|++.. .+.....+......+++..+++++++ .+++|.+|++.+.. .
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~ 133 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGAL 133 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCB
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcC
Confidence 34567789989888875 7999998753 12223335667788888444566555 68899999997541 1
Q ss_pred eeeEE---ecc--------cCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCe-------eEE-----EEeecCCCce
Q 002234 701 HLIQQ---IRE--------HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE-------IHC-----VQVHDIKDQI 756 (949)
Q Consensus 701 ~~i~~---l~~--------H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~~~~-------~~~-----~~~~~~~~~v 756 (949)
..+.. ..+ +...+.+++|+|||+++++++ .++.|++|++.... +.. ..........
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (361)
T 3scy_A 134 LPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP 213 (361)
T ss_dssp CSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE
T ss_pred cccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC
Confidence 11111 111 233468899999999766555 48999999987543 111 1112222233
Q ss_pred eeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCCCceeeeecccccccCC
Q 002234 757 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGK 835 (949)
Q Consensus 757 ~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 835 (949)
..+. |+|+|+. +++++ .++.|.+||+.++....... ......+
T Consensus 214 ~~~~-------~spdg~~----------------------------l~v~~~~~~~v~v~~~~~g~~~~~~~-~~~~~~~ 257 (361)
T 3scy_A 214 RHLI-------FNSDGKF----------------------------AYLINEIGGTVIAFRYADGMLDEIQT-VAADTVN 257 (361)
T ss_dssp EEEE-------ECTTSSE----------------------------EEEEETTTCEEEEEEEETTEEEEEEE-EESCSSC
T ss_pred eEEE-------EcCCCCE----------------------------EEEEcCCCCeEEEEEecCCceEEeEE-EecCCCC
Confidence 3343 7888775 44444 68899999998775432211 1223344
Q ss_pred CCCEEEEEEeCCceEEEEEECC-CCEEEEEECC--CCe--eEEeecCCCcEEEEEEcCC--EEEEEE-CCCeEEEE--EC
Q 002234 836 ANPVHALQVHNGLVYTASTSLD-GAAVKMWSTS--NYN--MVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW--DQ 905 (949)
Q Consensus 836 ~~~V~~l~~~~~~~~l~s~s~D-g~~I~iwd~~--~~~--~~~~~~~~~~v~~l~~s~d--~l~sgs-~dg~I~vw--d~ 905 (949)
......++|+|++.+++.+..+ ++.|.+|++. +++ .+..+.....+..++|+|| ++++++ .++.|.+| |.
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 5567899999999988776665 4599999985 444 4444445567889999998 677777 67899996 55
Q ss_pred CCCcEEEEeccccccceeEEEEe
Q 002234 906 KRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 906 ~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
.+++........+...+.|+.|.
T Consensus 338 ~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 338 ATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCcEeecceeeeCCCCeEEEEc
Confidence 57776554433455578999886
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=4e-17 Score=176.14 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=71.1
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 89 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 89 (949)
..++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+++++...++ ||..|+++|+.|+.++++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~-~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI-PNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE-ECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc-ccHHHHHHHHHHHHHCCCC
Confidence 4578999999999999999999999999999999999987665799999999988996 9999999999999988764
No 168
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=186.85 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=161.6
Q ss_pred EEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCC---CEEEEEEecCCCEEEEEeC---------CCcEEEEEC
Q 002234 673 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSL---------DKTARVWSI 739 (949)
Q Consensus 673 ~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~---~V~~v~fspdg~~L~Sgs~---------Dg~I~vWd~ 739 (949)
.++|+|+ .++..+.||+|++||+.++ +....+.+|.. .|.+++|||||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6789997 5555667999999999999 56666655544 4899999999999999887 789999999
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 819 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~ 819 (949)
.+++. .........+..+. |+|||+.+ +.+ .|+.|++||+.+
T Consensus 98 ~~g~~--~~~~~l~~~~~~~~-------~SPDG~~l----------------------------a~~-~~~~i~~~~~~~ 139 (719)
T 1z68_A 98 SNGEF--VRGNELPRPIQYLC-------WSPVGSKL----------------------------AYV-YQNNIYLKQRPG 139 (719)
T ss_dssp TTTEE--CCSSCCCSSBCCEE-------ECSSTTCE----------------------------EEE-ETTEEEEESSTT
T ss_pred CCCcc--ccceecCcccccce-------ECCCCCEE----------------------------EEE-ECCeEEEEeCCC
Confidence 99853 10011123344444 99999864 333 367899999988
Q ss_pred Cceeeeecccc---cccCCCCC---------EEEEEEeCCceEEEEEECCCC----------------------------
Q 002234 820 GTFATIQTGHR---KLLGKANP---------VHALQVHNGLVYTASTSLDGA---------------------------- 859 (949)
Q Consensus 820 ~~~~~~~~~~~---~~~~h~~~---------V~~l~~~~~~~~l~s~s~Dg~---------------------------- 859 (949)
+.......... .+.+|... ..+++|+||+.+++.++.|++
T Consensus 140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~ 219 (719)
T 1z68_A 140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA 219 (719)
T ss_dssp SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence 87653221100 11122221 248999999999998876531
Q ss_pred -----EEEEEECCCCeeE---Ee-----ec-CCCcEEEEEEcCC--EEEEEECC----CeEEEEE----CCCCcEEEEec
Q 002234 860 -----AVKMWSTSNYNMV---GS-----LP-TLSEVRAMVVSSE--LVYLGCKG----GTVEIWD----QKRQIRIETLQ 915 (949)
Q Consensus 860 -----~I~iwd~~~~~~~---~~-----~~-~~~~v~~l~~s~d--~l~sgs~d----g~I~vwd----~~~~~~~~~l~ 915 (949)
.|++||+.+++.. .. +. +...+..++|+|| .+++.... ..|.+|| ..+++....+.
T Consensus 220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 7889999987652 11 22 5567899999999 44443322 3588999 87877554442
Q ss_pred ---ccccccee-----EEEEeCCCCEEEE--EeCCCc--EEEEeC
Q 002234 916 ---TGTSGKVQ-----CMALDDNEEFLVI--GTSDGR--IQAWGL 948 (949)
Q Consensus 916 ---~~h~~~I~-----~l~~spdg~~L~s--gs~Dg~--I~iWdl 948 (949)
.+|.+.+. .+.|+|||+.++. +..+|. |.+||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 300 HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 36777776 8999999996544 556664 555554
No 169
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=136.71 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=67.9
Q ss_pred CCCCCCCcccCcCccccccCceecC-CCccccHHHHHHHHhc-CCCCCCCCCCCC-CCCCCCCccHHHHHHHHHHHHHCC
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIER-GNSSCPITRQKL-SSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~~-cghtfc~~ci~~~~~~-~~~~CP~c~~~~-~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
....+++++.||||+++|.|||+++ |||+||+.||.+|+.. +...||.||+.+ ....+ .+|..|+++|++|+..++
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~-~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL-IANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSC-EECHHHHHHHHHHHHHHT
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCcccc-CcCHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999 9999999999999875 346899999997 45566 599999999999999876
Q ss_pred CC
Q 002234 88 GG 89 (949)
Q Consensus 88 ~~ 89 (949)
..
T Consensus 85 ~~ 86 (92)
T 3ztg_A 85 YT 86 (92)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.63 E-value=4.5e-14 Score=159.16 Aligned_cols=273 Identities=8% Similarity=-0.022 Sum_probs=177.1
Q ss_pred ccccccccEEEEecC-CCC--eEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 634 SPLAFEMVKVLSNGH-DSS--ADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~-dg~--I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
..+++||.+|++.+. ++. |.+||..+ ......+|...+..+.|+|| .|+.++.++.|++||+.+++ ....+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~--~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE--ENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeee
Confidence 457889999998887 675 66777763 34445566666667889997 89999999999999999994 44444
Q ss_pred cccCCCEEEEE--EecCCCEEEEE----------------------eCCCcEEEEECCCCeeEEEEeecCCCceeeeeec
Q 002234 707 REHTKAVTGLA--ILQSGEMLYSG----------------------SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 707 ~~H~~~V~~v~--fspdg~~L~Sg----------------------s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~ 762 (949)
..+...+.... ++|++++++.. +.++.|.+||+.+++...+.. +...+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~~~~~~~~-- 194 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ--ENQWLGHPI-- 194 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE--ESSCEEEEE--
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec--CCccccccE--
Confidence 45555554444 48899988743 245789999999986444432 344455555
Q ss_pred cceEEEEe-CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCC--CCE
Q 002234 763 NSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA--NPV 839 (949)
Q Consensus 763 ~~~~~fsp-~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~--~~V 839 (949)
|+| ||+.++.....+. + ..+..|.++|..++... .+..+. ..+
T Consensus 195 -----~sp~dg~~l~~~~~~~~----~------------------~~~~~l~~~d~~~~~~~-------~l~~~~~~~~~ 240 (388)
T 3pe7_A 195 -----YRPYDDSTVAFCHEGPH----D------------------LVDARMWLINEDGTNMR-------KVKTHAEGESC 240 (388)
T ss_dssp -----EETTEEEEEEEEECSCT----T------------------TSSCSEEEEETTSCCCE-------ESCCCCTTEEE
T ss_pred -----ECCCCCCEEEEEEecCC----C------------------CCcceEEEEeCCCCceE-------EeeeCCCCccc
Confidence 899 8876543321100 0 01347888888766543 222232 357
Q ss_pred EEEEEeCCceEEEEEEC-CCC---EEEEEECCCCeeEE--eecCCCc----EEEEEEcCC--EEEEE---------ECCC
Q 002234 840 HALQVHNGLVYTASTSL-DGA---AVKMWSTSNYNMVG--SLPTLSE----VRAMVVSSE--LVYLG---------CKGG 898 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~-Dg~---~I~iwd~~~~~~~~--~~~~~~~----v~~l~~s~d--~l~sg---------s~dg 898 (949)
....|+||+..++..+. ++. .|.+||+.+++... .+..... .....|+|| .++.. ..+.
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 78899999986655443 222 39999999887433 2222000 111257877 34432 4567
Q ss_pred eEEEEECCCCcEEEEecccccc-----------ceeEEEEeCCCCEEEEEe-CCCcEEEEeC
Q 002234 899 TVEIWDQKRQIRIETLQTGTSG-----------KVQCMALDDNEEFLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 899 ~I~vwd~~~~~~~~~l~~~h~~-----------~I~~l~~spdg~~L~sgs-~Dg~I~iWdl 948 (949)
.|++||+.+++.. .+ ..|.. .+..++|+|||+.|+.++ .+|...+|.+
T Consensus 321 ~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 321 FLYVFNMKNGTQH-RV-ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEEEETTTTEEE-EE-EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEEEEeccCCceE-Ee-ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 9999999988753 34 23444 578899999999887665 5788777754
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=4.6e-13 Score=147.70 Aligned_cols=228 Identities=12% Similarity=0.081 Sum_probs=154.4
Q ss_pred CcEEEEecCCCceeeeEEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEEEeecCCCceeeeeeccc
Q 002234 688 GTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~~~ 764 (949)
++|.+||..++ +.+..+. ++-.....++++|+|+++++.+.++.|++||..... ...+......+.-..-...+.
T Consensus 69 ~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 69 DTILVIDPNNA--EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp CCEEEECTTTC--CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred CcEEEEECCCC--eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence 58999999988 4555553 455688999999999999998899999999986641 111111000000000000111
Q ss_pred eEEEEe-CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE--CCCcEEEEECCCCceeeeeccccc----ccCCCC
Q 002234 765 ILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRK----LLGKAN 837 (949)
Q Consensus 765 ~~~fsp-~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~----~~~h~~ 837 (949)
.++|+| +|. ++++. .++.|++|| .++.....+..... ..++-.
T Consensus 147 ~ia~~~~~g~-----------------------------lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~ 196 (329)
T 3fvz_A 147 DVAVEPSTGA-----------------------------VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFS 196 (329)
T ss_dssp EEEECTTTCC-----------------------------EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEES
T ss_pred EEEEeCCCCe-----------------------------EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccC
Confidence 222444 333 44443 478888888 45555543321100 012334
Q ss_pred CEEEEEEeCC-ceEEEEEECCCCEEEEEECCCCeeEEeec---CCCcEEEEEEcCCEEEEEE--------CCCeEEEEEC
Q 002234 838 PVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSELVYLGC--------KGGTVEIWDQ 905 (949)
Q Consensus 838 ~V~~l~~~~~-~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~d~l~sgs--------~dg~I~vwd~ 905 (949)
....++++++ +.+.++...+ +.|++||..+++.+..+. +...+..++++|..++... .++.|++||.
T Consensus 197 ~p~gia~d~~~g~l~v~d~~~-~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 197 VPHSLALVPHLDQLCVADREN-GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp CEEEEEEETTTTEEEEEETTT-TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEET
T ss_pred CCcEEEEECCCCEEEEEECCC-CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEc
Confidence 5899999998 6766666555 499999999899888875 4567889999997444332 2458999999
Q ss_pred CCCcEEEEec--cccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 906 KRQIRIETLQ--TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 906 ~~~~~~~~l~--~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+++.+..+. .++...+.+++++|||.++++...+++|++|++
T Consensus 276 ~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 276 SSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred CCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 9999998873 256667999999999988888889999999986
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=2.7e-13 Score=151.67 Aligned_cols=284 Identities=12% Similarity=0.141 Sum_probs=181.6
Q ss_pred cccEEEEe------cCCCCeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEe----------CCCcEEEEecCCC
Q 002234 639 EMVKVLSN------GHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 698 (949)
Q Consensus 639 ~~~~l~s~------s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs----------~Dg~I~vWd~~t~ 698 (949)
++.+++.. ..|+.|.+||..+ .......+..+ .++|+|| +++++. .+++|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 55555543 2478999999764 33344444444 8999997 666665 3678999999988
Q ss_pred ceeeeEEecc------cCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEe-ecCCCceeeeeecc----ce
Q 002234 699 ILHLIQQIRE------HTKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSN----SI 765 (949)
Q Consensus 699 ~~~~i~~l~~------H~~~V~~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~----~~ 765 (949)
+.+.++.. +......++|+|||++|+++.. +++|.+||+.+++. ... ...... ..+.+.+ ..
T Consensus 92 --~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~~~~-~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 --TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAAAGC-WSVIPQPNRPRSF 166 (361)
T ss_dssp --CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGGTTE-EEEEECTTSSSEE
T ss_pred --cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecCCCc-ceeEEcCCCCeeE
Confidence 56666643 2345678999999999998874 68999999999852 333 222211 1111111 12
Q ss_pred EEEEeCCCEEEEEEec-CeEE-------EecCCCCceEE--EEeCCEEEEEECCCcEEEEECCCCceeeee--cccc--c
Q 002234 766 LCFIPQGAGIKVHLRN-GKTK-------LLNSSKYPKCL--ALVQGKVYCGCQDGAIQEIDLATGTFATIQ--TGHR--K 831 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~-g~i~-------~~~~~~~v~~v--~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~--~~~~--~ 831 (949)
+.++++|+.+.+.... +.+. +|+.......+ ...+..++..+.++.|.++|+..+...... .... .
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 3466666655544432 3332 22222211111 112346677778999999999766432111 0000 0
Q ss_pred ccCC--CCCEEEEEEeCCceEEEEEEC-C---------CCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC
Q 002234 832 LLGK--ANPVHALQVHNGLVYTASTSL-D---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG 897 (949)
Q Consensus 832 ~~~h--~~~V~~l~~~~~~~~l~s~s~-D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d 897 (949)
.... ......++|++++..+..... + +.+|.+||+.+++.+.++..+. +.+++|+|| ++++++.
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence 0000 011123688988665554432 1 1389999999999999998656 999999998 7887776
Q ss_pred CeEEEEECCCC--cEEEEeccccccceeEEEEeCCCC
Q 002234 898 GTVEIWDQKRQ--IRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 898 g~I~vwd~~~~--~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
++|.+||..++ +.+.++. .+......++++|||.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 99999999999 9998873 4566788999999985
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.60 E-value=2.4e-14 Score=176.28 Aligned_cols=238 Identities=12% Similarity=0.101 Sum_probs=159.4
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCC-----EEEEEEecCCCEEEEEeCC---------C
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-----VTGLAILQSGEMLYSGSLD---------K 732 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~-----V~~v~fspdg~~L~Sgs~D---------g 732 (949)
....++.|+|| +++++ ||+|++||+.++ ++...+.+|... ...+.|||||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 34668999997 66665 999999999999 566667777643 2447899999999999887 5
Q ss_pred cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcE
Q 002234 733 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 812 (949)
Q Consensus 733 ~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I 812 (949)
.+.+||+.+++.. ....+...+.... |||||+.++ .+ .|+.|
T Consensus 93 ~~~~~d~~~~~~~--~l~~~~~~~~~~~-------~SPdG~~la----------------------------~~-~~~~i 134 (740)
T 4a5s_A 93 SYDIYDLNKRQLI--TEERIPNNTQWVT-------WSPVGHKLA----------------------------YV-WNNDI 134 (740)
T ss_dssp EEEEEETTTTEEC--CSSCCCTTEEEEE-------ECSSTTCEE----------------------------EE-ETTEE
T ss_pred EEEEEECCCCcEE--EcccCCCcceeeE-------ECCCCCEEE----------------------------EE-ECCeE
Confidence 5679999998633 2333445566655 999998743 33 46788
Q ss_pred EEEECCCCceeeeec-cc--ccccCCC---------CCEEEEEEeCCceEEEEEECCCC---------------------
Q 002234 813 QEIDLATGTFATIQT-GH--RKLLGKA---------NPVHALQVHNGLVYTASTSLDGA--------------------- 859 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~-~~--~~~~~h~---------~~V~~l~~~~~~~~l~s~s~Dg~--------------------- 859 (949)
++||+.++....... +. ..+.++. .....+.|+||+.+++..+.|++
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence 889888777543211 10 0112222 12235889999999888764432
Q ss_pred --------------EEEEEECCC---C---eeEEeec------CCCcEEEEEEcCC--EEEEEE----CCCeEEEEECCC
Q 002234 860 --------------AVKMWSTSN---Y---NMVGSLP------TLSEVRAMVVSSE--LVYLGC----KGGTVEIWDQKR 907 (949)
Q Consensus 860 --------------~I~iwd~~~---~---~~~~~~~------~~~~v~~l~~s~d--~l~sgs----~dg~I~vwd~~~ 907 (949)
+|.+||+.+ + +...... +...+..++|+|| .++... .+..|++||..+
T Consensus 215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 588899988 7 3332221 4566899999999 344332 234799999998
Q ss_pred Cc----EE---EEecccccccee-----EEEEeCCCCEEE-EEe-CCC--cEEEEeC
Q 002234 908 QI----RI---ETLQTGTSGKVQ-----CMALDDNEEFLV-IGT-SDG--RIQAWGL 948 (949)
Q Consensus 908 ~~----~~---~~l~~~h~~~I~-----~l~~spdg~~L~-sgs-~Dg--~I~iWdl 948 (949)
++ +. ..+..+|.+.|. ...|+|||+.++ ..+ .+| .|.+||+
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 87 21 111234655555 789999999877 665 344 4667765
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=2.6e-13 Score=167.04 Aligned_cols=306 Identities=9% Similarity=0.001 Sum_probs=191.9
Q ss_pred cccccccccEEEEecCCCCeEEEecCC--ceeeecCCCCc-----eEEEEEeCC--EEEEEeCC---------CcEEEEe
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGK-----VLSIACFRD--KIFSGHSD---------GTIKVWT 694 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~-----V~~l~~s~d--~lasgs~D---------g~I~vWd 694 (949)
...+.+|+.+++++ |++|++||..+ ....+.+|... ...+.|||| +|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 34566788888886 99999999873 44556666533 344788998 78888776 5667999
Q ss_pred cCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceee-ee---------eccc
Q 002234 695 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-LA---------VSNS 764 (949)
Q Consensus 695 ~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~-l~---------~~~~ 764 (949)
+.++ + ...+..|.+.+...+|||||+.|+.++ |+.|++||+.+++...+........+.. .. ....
T Consensus 99 ~~~~--~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 99 LNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCC--c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9998 3 345677888999999999999999885 6899999999886443332222222211 00 0112
Q ss_pred eEEEEeCCCEEEEEEecC------------------------------------eEEEecCCC---C-------------
Q 002234 765 ILCFIPQGAGIKVHLRNG------------------------------------KTKLLNSSK---Y------------- 792 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g------------------------------------~i~~~~~~~---~------------- 792 (949)
...|||||+.|+....+. .+.+|+..+ .
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 355999999998875432 345566443 2
Q ss_pred -------ceEEEEeC-CE-EEEEEC----CCcEEEEECCCCc----eeeeecccccc--cCCCCCEE-----EEEEeCCc
Q 002234 793 -------PKCLALVQ-GK-VYCGCQ----DGAIQEIDLATGT----FATIQTGHRKL--LGKANPVH-----ALQVHNGL 848 (949)
Q Consensus 793 -------v~~v~~~~-~~-l~sgs~----Dg~I~iwd~~~~~----~~~~~~~~~~~--~~h~~~V~-----~l~~~~~~ 848 (949)
+..++|++ ++ ++.... +..|.+||+.+++ +... ..+ .+|...|. ...|+||+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~----~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA----RQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG----GCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE----EEeeeccCCceEccCcCCCceEcCCC
Confidence 34556664 55 333322 2369999999887 3211 111 33444443 67899999
Q ss_pred eEEE-EEECC-C-CEEEEEECCCCeeEEeecCCCcEEEEE-EcCCEEE-EEEC----CC--eEEEEECCCCcEEEEecc-
Q 002234 849 VYTA-STSLD-G-AAVKMWSTSNYNMVGSLPTLSEVRAMV-VSSELVY-LGCK----GG--TVEIWDQKRQIRIETLQT- 916 (949)
Q Consensus 849 ~~l~-s~s~D-g-~~I~iwd~~~~~~~~~~~~~~~v~~l~-~s~d~l~-sgs~----dg--~I~vwd~~~~~~~~~l~~- 916 (949)
..++ ..+.+ | ..|.+||..++.......+...+..+. ++.+.++ +++. .+ .|+..++..+.....+..
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence 8776 55533 2 478899998776655444555565544 5544444 4443 23 455555555544334421
Q ss_pred --ccccceeEEEEeCCCCEEEEEeCC---CcEEEEeC
Q 002234 917 --GTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 948 (949)
Q Consensus 917 --~h~~~I~~l~~spdg~~L~sgs~D---g~I~iWdl 948 (949)
+....+....||||+++++..... ..+.+++.
T Consensus 411 ~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS 447 (740)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred cCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence 123568899999999987655433 24555543
No 175
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=3.8e-13 Score=150.70 Aligned_cols=241 Identities=11% Similarity=0.106 Sum_probs=154.3
Q ss_pred EEEEEeCC--CcEEEEec--CCCceeeeEEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeEEEEeecCC
Q 002234 680 KIFSGHSD--GTIKVWTG--RGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVHDIK 753 (949)
Q Consensus 680 ~lasgs~D--g~I~vWd~--~t~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~-~~~~~~~~~~~~~ 753 (949)
.++.|+.. +.|.+|++ .++....+.... ++...+..++|+|||++|++++.+ +|.+||+. +++..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 56888765 566433343322 244568889999999999999988 99999997 7754332222111
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEec-CeEEEecCCCCceEEEEeCCEEEEEE----CCCcEEEEECC-CCceeeeec
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNSSKYPKCLALVQGKVYCGC----QDGAIQEIDLA-TGTFATIQT 827 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~-g~i~~~~~~~~v~~v~~~~~~l~sgs----~Dg~I~iwd~~-~~~~~~~~~ 827 (949)
+.+..+. |+|+|+.+.+...+ +.. ...+. .+|.+.+|++. +++......
T Consensus 83 g~~~~~~-------~spdg~~l~~~~~~~~~~------------------~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 83 GHPRAND-------ADTNTRAIFLLAAKQPPY------------------AVYANPFYKFAGYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp SSGGGGC-------TTSCCEEEEEEECSSTTC------------------CEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred CCCccEE-------ECCCCCEEEEEEecCCcc------------------eeccceeecCCceEEEEccCCCCcCcceEe
Confidence 2233444 88888753211110 000 00111 68899999997 455432211
Q ss_pred ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC-CCeeE--Eeec---CCCcEEEEEEcCC--EEEEEEC-CC
Q 002234 828 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV--GSLP---TLSEVRAMVVSSE--LVYLGCK-GG 898 (949)
Q Consensus 828 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-~~~~~--~~~~---~~~~v~~l~~s~d--~l~sgs~-dg 898 (949)
.. ...+...+..++|+|++.+++++...+..|.+||+. +++.. ..+. +...+..++|+|| ++++++. ++
T Consensus 138 ~~--~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 138 NY--EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EE--ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred eE--EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 00 012456799999999999887776544599999998 67643 3333 3567999999999 6777664 78
Q ss_pred eEEEEECC--CCcEE---EEe---cc---cccc------ceeEEE-EeCCCCEEEEEeCCC------cEEEEeC
Q 002234 899 TVEIWDQK--RQIRI---ETL---QT---GTSG------KVQCMA-LDDNEEFLVIGTSDG------RIQAWGL 948 (949)
Q Consensus 899 ~I~vwd~~--~~~~~---~~l---~~---~h~~------~I~~l~-~spdg~~L~sgs~Dg------~I~iWdl 948 (949)
.|.+|+++ +++.. ..+ .. +|.. .+..++ |+|||++|++++.++ +|.+|++
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 99999865 56542 222 11 2222 588999 999999988776432 8999987
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.56 E-value=2.3e-12 Score=138.63 Aligned_cols=236 Identities=11% Similarity=0.122 Sum_probs=159.8
Q ss_pred cCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec------ccCCCEEEEEEe-cCCCEEEEEeC-CCcE
Q 002234 665 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR------EHTKAVTGLAIL-QSGEMLYSGSL-DKTA 734 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~------~H~~~V~~v~fs-pdg~~L~Sgs~-Dg~I 734 (949)
.+|-..+.+++++++ ++++...++.|.+||.... .+..+. +|...+..++++ ++++++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 456678999999986 6777778999999998743 444443 345678999995 67776666643 8899
Q ss_pred EEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEE
Q 002234 735 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 814 (949)
Q Consensus 735 ~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~i 814 (949)
++||. +++............+..+. +.|+|+. +++...++.|.+
T Consensus 103 ~~~d~-~g~~~~~~~~~~~~~~~~i~-------~~~~g~l----------------------------~v~~~~~~~i~~ 146 (286)
T 1q7f_A 103 QIYNQ-YGQFVRKFGATILQHPRGVT-------VDNKGRI----------------------------IVVECKVMRVII 146 (286)
T ss_dssp EEECT-TSCEEEEECTTTCSCEEEEE-------ECTTSCE----------------------------EEEETTTTEEEE
T ss_pred EEECC-CCcEEEEecCccCCCceEEE-------EeCCCCE----------------------------EEEECCCCEEEE
Confidence 99994 44321111111122333433 6666642 344456788999
Q ss_pred EECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC---CcEEEEEEcCC--
Q 002234 815 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSSE-- 889 (949)
Q Consensus 815 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~d-- 889 (949)
||.. ++....+. ..++...+..+++++++.+.++.+.++ .|++||. +++.+..+... ..+..++++++
T Consensus 147 ~~~~-g~~~~~~~----~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 147 FDQN-GNVLHKFG----CSKHLEFPNGVVVNDKQEIFISDNRAH-CVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp ECTT-SCEEEEEE----CTTTCSSEEEEEECSSSEEEEEEGGGT-EEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred EcCC-CCEEEEeC----CCCccCCcEEEEECCCCCEEEEECCCC-EEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC
Confidence 9964 44443221 113445789999999998877766665 9999997 45566666532 57899999988
Q ss_pred EEEEEECCC-eEEEEECCCCcEEEEecccc-ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 890 LVYLGCKGG-TVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 ~l~sgs~dg-~I~vwd~~~~~~~~~l~~~h-~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+++...++ .|.+||. +++.+..+..+. ...+.+++++|+|+++++ +.|++|++|++
T Consensus 220 l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 444455565 9999995 566666664221 224789999999987776 67999999986
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=2e-12 Score=142.44 Aligned_cols=260 Identities=10% Similarity=0.025 Sum_probs=171.1
Q ss_pred ccccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
..+..++..++..+.++.++.|. ......+..+...+.+++|+++ +++++..++.|.+||..++ +.......+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~ 87 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTIT-AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKA 87 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEE-CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSS
T ss_pred eeecCCccceeEEeecccCcccc-cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC--cEEEEeeCCCC
Confidence 33444555566667788999993 3445556667778899999986 6667888999999999988 33333335678
Q ss_pred CEEEEEEecCCCEEEEEeCC----CcEEEEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 712 AVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~D----g~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
.+.+++|+|+|+++++...+ +.|.+||..++....... ......+..+. ++|+|+.
T Consensus 88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~-------~d~~g~l------------ 148 (333)
T 2dg1_A 88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV-------FDSKGGF------------ 148 (333)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE-------ECTTSCE------------
T ss_pred CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE-------ECCCCCE------------
Confidence 89999999999988887776 689999998875432211 11223344444 6677653
Q ss_pred ecCCCCceEEEEeCCEEEEEEC-------CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE-ECCC
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQ-------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDG 858 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~Dg 858 (949)
+.++. .+.|..||..+++..... .+...+..++|++++.++..+ +.+
T Consensus 149 -----------------~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~~- 203 (333)
T 2dg1_A 149 -----------------YFTDFRGYSTNPLGGVYYVSPDFRTVTPII-------QNISVANGIALSTDEKVLWVTETTA- 203 (333)
T ss_dssp -----------------EEEECCCBTTBCCEEEEEECTTSCCEEEEE-------EEESSEEEEEECTTSSEEEEEEGGG-
T ss_pred -----------------EEEeccccccCCCceEEEEeCCCCEEEEee-------cCCCcccceEECCCCCEEEEEeCCC-
Confidence 22322 245666666655543221 122357889999998755444 344
Q ss_pred CEEEEEECCC-CeeEE--------eecCCCcEEEEEEcCC-EEE-EEECCCeEEEEECCCCcEEEEeccc-----cccce
Q 002234 859 AAVKMWSTSN-YNMVG--------SLPTLSEVRAMVVSSE-LVY-LGCKGGTVEIWDQKRQIRIETLQTG-----TSGKV 922 (949)
Q Consensus 859 ~~I~iwd~~~-~~~~~--------~~~~~~~v~~l~~s~d-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~-----h~~~I 922 (949)
+.|.+||..+ +.... .+.....+..++++++ .++ +...++.|.+||. +++.+..+... |...+
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~ 282 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS 282 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCc
Confidence 4999999963 33221 1122246888999987 444 4456789999998 56666666322 11268
Q ss_pred eEEEEeCCCCEEEEEeCCC
Q 002234 923 QCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 923 ~~l~~spdg~~L~sgs~Dg 941 (949)
.+++|+||++.|+.++.+|
T Consensus 283 ~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 283 THPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CEEEECTTSCEEEEEEECG
T ss_pred ceEEECCCCCEEEEEeCcc
Confidence 9999999988887666553
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.53 E-value=1.8e-12 Score=144.96 Aligned_cols=251 Identities=12% Similarity=0.198 Sum_probs=164.9
Q ss_pred CCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCeeE-EEEeecCCC
Q 002234 686 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIH-CVQVHDIKD 754 (949)
Q Consensus 686 ~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs----------~Dg~I~vWd~~~~~~~-~~~~~~~~~ 754 (949)
.|++|.+||..++ +.+.++..+..+ .++|+|||+++++++ .+++|.+||..+++.. .+.....
T Consensus 29 ~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~-- 102 (361)
T 2oiz_A 29 TESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK-- 102 (361)
T ss_dssp GGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT--
T ss_pred ccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc--
Confidence 4789999999998 667777766655 899999999999886 3678999999887522 2222110
Q ss_pred ceeeeeeccceEEEEeCCCEEEEEEe--cCeEEEecCCCC--ceE---------EEEeC---CEEEEEECCCcEEEEECC
Q 002234 755 QIQNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKC---------LALVQ---GKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 755 ~v~~l~~~~~~~~fsp~g~~l~~~~~--~g~i~~~~~~~~--v~~---------v~~~~---~~l~sgs~Dg~I~iwd~~ 818 (949)
.. .....+..+.|+|||+++.+... ++.+.+|+.... +.. +.+.+ ..+++.+.||.+.+|+..
T Consensus 103 ~~-~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 103 RV-QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp BC-CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cc-ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 00 00012334559999999999886 478999986543 111 22232 357889999999999987
Q ss_pred C-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEeecC-----------CCcEEEE
Q 002234 819 T-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPT-----------LSEVRAM 884 (949)
Q Consensus 819 ~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l 884 (949)
. ++..........+..+..++ .+.+.+++..++..+.++ .+.+||+.... ....+.. ......+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~-~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYG-NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTS-EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCC-eEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 5 54431111001122222232 223345555555556665 89999987543 2222210 0111236
Q ss_pred EEcCC--EEEEEEC-----------CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 885 VVSSE--LVYLGCK-----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 885 ~~s~d--~l~sgs~-----------dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
+|+|| .++++.. .+.|.+||..+++.+.++. .+. +.+++|+|||++|++++. ++|.+||..
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 88887 5555432 3589999999999999996 444 999999999999999887 999999963
No 179
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.52 E-value=5.2e-15 Score=137.59 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=62.8
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-CCCCCccHHHHHHHHHHHH
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYVLKRLIASWQE 84 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~-~~~~~~n~~l~~~i~~~~~ 84 (949)
.+++++.||||+++|.+||+++|||+||+.||..|+..+...||.||+.+.. ..+ ++|..|++++++|..
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAM-QVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC-CCCHHHHHHHHHHST
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCC-CCCHHHHHHHHHHcc
Confidence 3467899999999999999999999999999999998766699999999987 566 599999999999864
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=4.6e-13 Score=162.63 Aligned_cols=251 Identities=10% Similarity=-0.004 Sum_probs=168.8
Q ss_pred eeeecCCCCceEEEEEeCC--EEEEE--eCCCcEEEEecCCCceeeeEEecccCCCEE---------EEEEe--cCCCE-
Q 002234 661 VHVDSSENGKVLSIACFRD--KIFSG--HSDGTIKVWTGRGSILHLIQQIREHTKAVT---------GLAIL--QSGEM- 724 (949)
Q Consensus 661 ~~~~~~h~~~V~~l~~s~d--~lasg--s~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~---------~v~fs--pdg~~- 724 (949)
...+.+|...+..++|+++ ++++. +.++...||....+ .....+..|...+. ...|+ |||+.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3456679999999999998 44455 45889999996544 34566777776666 66676 99998
Q ss_pred EEEEeC-CCcEEEEECC--C-CeeEEEEeec---CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEE
Q 002234 725 LYSGSL-DKTARVWSIG--N-EEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 797 (949)
Q Consensus 725 L~Sgs~-Dg~I~vWd~~--~-~~~~~~~~~~---~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~ 797 (949)
|+.++. +..|.+|++. + ++...+.... +...+..+. |+|||+.++....+..- ..
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~-------~spDg~~l~~~~~~~~~-----~~------ 155 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV-------LLPERGEVWCMAEEFTG-----EG------ 155 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE-------EETTTTEEEEEEEEECS-----SS------
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE-------ECCCCCEEEEEEecccC-----CC------
Confidence 776654 5677777776 3 4433332211 233444544 99999976544322100 00
Q ss_pred EeCCEEEEEECCCcEEEEECCC------Cceeeeeccccccc-CCCCCEEEEEEeCCceEEEEEECCC-------CEEEE
Q 002234 798 LVQGKVYCGCQDGAIQEIDLAT------GTFATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDG-------AAVKM 863 (949)
Q Consensus 798 ~~~~~l~sgs~Dg~I~iwd~~~------~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~Dg-------~~I~i 863 (949)
+ ......|.+||+.+ +... .+. .+...+..++|+||+.+++..+.++ ..|.+
T Consensus 156 --~-----~~~~~~i~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 156 --P-----SDVRRFLAAVPLDGSAAADRSAVR-------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp --T-----TCEEEEEEEEETTSTTTTCGGGSE-------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred --C-----CCceeEEEEEECCCCccccCCcee-------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence 0 00114789999987 5442 233 4446778899999999998877553 48999
Q ss_pred EECC-CC---eeEEeec-CCCcEEEEEEcCC--EEEEEECCC--eEEEEECCCCcEEEEeccccccc--------eeEEE
Q 002234 864 WSTS-NY---NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGG--TVEIWDQKRQIRIETLQTGTSGK--------VQCMA 926 (949)
Q Consensus 864 wd~~-~~---~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg--~I~vwd~~~~~~~~~l~~~h~~~--------I~~l~ 926 (949)
||+. ++ +...... +...+..+.|+|| ++++++.++ .|++||..+++..... .++... +..++
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~~~~~ 300 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTPGMRWFA 300 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCSTTCCSEE
T ss_pred EEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc-cccccccCccccccCceEe
Confidence 9998 56 4433333 3678999999998 567777777 6777777677654433 333332 57899
Q ss_pred EeCCCCEEEEEeCCCcEEEEe
Q 002234 927 LDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 927 ~spdg~~L~sgs~Dg~I~iWd 947 (949)
|+|+++++++++. |++++|.
T Consensus 301 ~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 301 PLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp ECTTSCEEEEEBS-SSCEEEE
T ss_pred EeCCCEEEEEEEc-CccEEEE
Confidence 9999999999999 9999994
No 181
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=1.3e-12 Score=158.66 Aligned_cols=274 Identities=9% Similarity=0.031 Sum_probs=173.8
Q ss_pred cccccccccEEEEe--cCCCCeEEEecC--CceeeecCCCCceE---------EEEEe--CC--E-EEEEeC-CCcEEEE
Q 002234 633 YSPLAFEMVKVLSN--GHDSSADFWNHR--ELVHVDSSENGKVL---------SIACF--RD--K-IFSGHS-DGTIKVW 693 (949)
Q Consensus 633 ~~~~~~~~~~l~s~--s~dg~I~vWd~~--~~~~~~~~h~~~V~---------~l~~s--~d--~-lasgs~-Dg~I~vW 693 (949)
...++.+..++++. +.++...+|... .....+..|...+. ...|+ || . |+.++. +..|.+|
T Consensus 28 ~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~ 107 (662)
T 3azo_A 28 CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAF 107 (662)
T ss_dssp EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEE
T ss_pred eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEE
Confidence 33344444455665 558889999853 33455666666666 66666 65 6 665554 5677777
Q ss_pred ecC--C-CceeeeEEecc-----cCCCEEEEEEecCCCEEEEEeCC----------CcEEEEECCC------CeeEEEEe
Q 002234 694 TGR--G-SILHLIQQIRE-----HTKAVTGLAILQSGEMLYSGSLD----------KTARVWSIGN------EEIHCVQV 749 (949)
Q Consensus 694 d~~--t-~~~~~i~~l~~-----H~~~V~~v~fspdg~~L~Sgs~D----------g~I~vWd~~~------~~~~~~~~ 749 (949)
++. + + ....+.. |...+..++|+|||+.|++++.| .+|++||+.+ ++...+.
T Consensus 108 ~~~~~g~~---~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~- 183 (662)
T 3azo_A 108 EPDAPGGA---VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS- 183 (662)
T ss_dssp CTTSTTCC---CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-
T ss_pred cCCCCCCC---CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE-
Confidence 776 3 5 2344444 67789999999999999999887 5899999988 6433222
Q ss_pred ecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC-CC---ceeee
Q 002234 750 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TG---TFATI 825 (949)
Q Consensus 750 ~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~-~~---~~~~~ 825 (949)
..+...+..+. |+|||+.++...+++....| ....|.+||+. ++ ...
T Consensus 184 ~~~~~~~~~~~-------~SpDG~~la~~~~~~~~~~~--------------------~~~~i~~~d~~~~g~~~~~~-- 234 (662)
T 3azo_A 184 DDAHRFVTGPR-------LSPDGRQAVWLAWDHPRMPW--------------------EGTELKTARVTEDGRFADTR-- 234 (662)
T ss_dssp CSCSSEECCCE-------ECTTSSEEEEEEECTTCCTT--------------------TCEEEEEEEECTTSCEEEEE--
T ss_pred ecCCCcccCce-------ECCCCCEEEEEECCCCCCCC--------------------CCcEEEEEEECCCCcccccE--
Confidence 02234444444 99999986554433210000 12468999998 56 222
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCC-CEEEEEECCCCeeEEeecCCCc---------EEEEEEcCC--EEEE
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLPTLSE---------VRAMVVSSE--LVYL 893 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~~~~~~---------v~~l~~s~d--~l~s 893 (949)
....+|...+..+.|+||+.++++++.++ ..|.+||..+++......+... +..++|+++ .+++
T Consensus 235 ----~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 235 ----TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp ----EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred ----EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 12233467899999999999777766553 1566777767765554443221 467888876 6777
Q ss_pred EECCCeEEEE--ECCCCcEEEEeccccccceeEE-EEeCCCCEEEEEeCCCcEEEE
Q 002234 894 GCKGGTVEIW--DQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 894 gs~dg~I~vw--d~~~~~~~~~l~~~h~~~I~~l-~~spdg~~L~sgs~Dg~I~iW 946 (949)
++. +.++|| |..+++ +..+ ..|.+.+..+ +++++.-++++++.+....+|
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEc-CccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 777 999999 665555 5666 4667777777 554433344455556544554
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=4.6e-13 Score=150.96 Aligned_cols=272 Identities=7% Similarity=-0.069 Sum_probs=167.0
Q ss_pred cccccccccEEEEecCC---CCeEEEecCCc-eeeecCCCCc-eEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 633 YSPLAFEMVKVLSNGHD---SSADFWNHREL-VHVDSSENGK-VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~d---g~I~vWd~~~~-~~~~~~h~~~-V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
...+++||.+|+..... ..|.+||..+. ...+..+... ...+.|+|| +|+.++.++.|++||+.+++ ....
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~--~~~~ 117 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE--EQVI 117 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC--EEEE
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC--cEEE
Confidence 45677899988776543 35777787642 2223333333 334789997 89899999999999999884 3333
Q ss_pred ecccCCCEEE-------------------EEEecCCCEEEEE-----eCCCcEEEEECCCCeeEEEEeecCCCceeeeee
Q 002234 706 IREHTKAVTG-------------------LAILQSGEMLYSG-----SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 761 (949)
Q Consensus 706 l~~H~~~V~~-------------------v~fspdg~~L~Sg-----s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~ 761 (949)
...+...... +.|+|+++.++.+ ..+..|.+||+.+++...+. .....+..+.
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~- 194 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPI- 194 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEE-
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccce-
Confidence 3334432222 3456777666544 35678999999888644333 2334455544
Q ss_pred ccceEEEEe-CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCC--CCC
Q 002234 762 SNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANP 838 (949)
Q Consensus 762 ~~~~~~fsp-~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~ 838 (949)
|+| +|+.++....++. ......|.+||+.++.... +..+ ...
T Consensus 195 ------~sp~dg~~l~~~~~~~~----------------------~~~~~~l~~~d~~~~~~~~-------l~~~~~~~~ 239 (396)
T 3c5m_A 195 ------YRPFDDSTVGFCHEGPH----------------------DLVDARMWLVNEDGSNVRK-------IKEHAEGES 239 (396)
T ss_dssp ------EETTEEEEEEEEECSCS----------------------SSCSCCCEEEETTSCCCEE-------SSCCCTTEE
T ss_pred ------ECCCCCCEEEEEecCCC----------------------CCCCceEEEEECCCCceeE-------eeccCCCcc
Confidence 777 6654332211000 0001468888987665432 1112 235
Q ss_pred EEEEEEeCCceEEEEEECCC----CEEEEEECCCCeeEEeecCCCcEEEEEEcC-C--EEEEEE----------------
Q 002234 839 VHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGSLPTLSEVRAMVVSS-E--LVYLGC---------------- 895 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~-d--~l~sgs---------------- 895 (949)
+..+.|+|++.+++..+.++ +.|.+||+.+++......... .. +.|+| | .++.++
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 78899999998766664431 259999998886544332222 33 88988 7 555543
Q ss_pred CCCeEEEEECCCCcEEEEecccccc-----------ceeEEEEeCCCCEEEEEeC-CCcEEEEeC
Q 002234 896 KGGTVEIWDQKRQIRIETLQTGTSG-----------KVQCMALDDNEEFLVIGTS-DGRIQAWGL 948 (949)
Q Consensus 896 ~dg~I~vwd~~~~~~~~~l~~~h~~-----------~I~~l~~spdg~~L~sgs~-Dg~I~iWdl 948 (949)
.++.|++||..+++.. .+. .+.. .+..++|+|||+.|+.++. +|...+|.+
T Consensus 318 ~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999999888743 332 3333 2567899999998887764 566666643
No 183
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.50 E-value=5.1e-15 Score=131.76 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 14 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
.+++++.||||++.|.+||++ +|||+||+.||.+|+..+ ..||.||+.+....+. +|..++++++.|+...+.
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~-~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLK-NNRILDELVKSLNFARNH 91 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHHT
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCC-cCHHHHHHHHHHHHHHHH
Confidence 345789999999999999998 999999999999999864 5899999999988884 999999999999987654
No 184
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.50 E-value=5e-14 Score=165.15 Aligned_cols=320 Identities=10% Similarity=0.094 Sum_probs=236.6
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccc
Q 002234 124 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 203 (949)
Q Consensus 124 l~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~ 203 (949)
++++|..+.+. ..+.+.+|+..+|++... +.++.+.. +...+++..||++|..+.++.++..|..+|.++++.+...
T Consensus 59 i~~~v~~l~s~-d~~~q~~a~~~~rklls~-e~~ppi~~-ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 59 VEDIVKGINSN-NLESQLQATQAARKLLSR-EKQPPIDN-IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTC-SSCCCHHH-HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcC-CCCchHHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 45567777644 456688999999987532 24454433 4466788889999988878999999999999998888878
Q ss_pred eeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCC-hH---HHHHhhhhHHHHHHHHhccccchhcccCchhhHHH
Q 002234 204 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TR---TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 275 (949)
Q Consensus 204 ~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~-~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~ 275 (949)
.+.++ ..|+++.|+.+|+++ +..|+.+|.+|... ++ .+...+.+++|+.+|.......... .-...+..
T Consensus 136 ~~~vv-~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~--~~~~~a~~ 212 (510)
T 3ul1_B 136 TKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC--GYLRNLTW 212 (510)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH--HHHHHHHH
T ss_pred HHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH--HHHHHHHH
Confidence 87777 789999999999988 67888999999643 33 3344566799999998753221000 00111233
Q ss_pred HHHHHhcCCcccccccchhhh-cchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhc
Q 002234 276 LLGQMIGDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA 354 (949)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~i-~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~ 354 (949)
.+..+ ..+......+ ...|++|.|+.+++.++.+.+..|+.+|.++..........+.+.+.++.|+++|.+.
T Consensus 213 ~L~nl------~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 213 TLSNL------CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHH------HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHH------hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC
Confidence 33333 2222233333 3357789999999999999999999999999877777778889999999999999999
Q ss_pred CCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHH
Q 002234 355 SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREE 434 (949)
Q Consensus 355 ~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~ 434 (949)
+...+..++.+|.++.... ......|-+.|.+.. |+.+|+...++-+-.+++.|.++..-....+..+..++
T Consensus 287 ~~~v~~~al~aL~nl~~~~-----~~~~~~i~~~g~l~~---L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g 358 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ChhhhhHHHHHHHHhhcCC-----HHHHHHHhhccchHH---HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC
Confidence 9999999999999987652 233344566777755 67777887888888899999999654444455556677
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 435 AIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 435 ~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
+++.|+..|++++. ++|..|+.||.||.-
T Consensus 359 ~i~~Lv~lL~~~~~-~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 359 LVPFLVGVLSKADF-KTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHHHSSCH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCH-HHHHHHHHHHHHHHc
Confidence 89999999998875 668899999999853
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=1.2e-11 Score=136.25 Aligned_cols=257 Identities=10% Similarity=-0.009 Sum_probs=173.8
Q ss_pred CCCCeEEEecCCceeee--------cCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEE
Q 002234 648 HDSSADFWNHRELVHVD--------SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 718 (949)
Q Consensus 648 ~dg~I~vWd~~~~~~~~--------~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~f 718 (949)
.+++|.+||..+..... .........+.+.++ .+++...+++|.+||..++ +.+.++. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEE
Confidence 48899999997432111 012245678888887 4555556799999999999 6777774 4567899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEE
Q 002234 719 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 798 (949)
Q Consensus 719 spdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~ 798 (949)
+++++..++...++.|.+||..+++....... .... .....+..+++
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~--g~~~-------------------------------~~~~~p~~i~~ 138 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIEC--PDMD-------------------------------MESGSTEQMVQ 138 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEEC--TTCC-------------------------------TTTCBCCCEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEc--CCcc-------------------------------ccCCCcceEEE
Confidence 99985555554899999999999853221111 1100 00001112233
Q ss_pred eCCEEEEEE--CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC---------CCEEEEEECC
Q 002234 799 VQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTS 867 (949)
Q Consensus 799 ~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---------g~~I~iwd~~ 867 (949)
.+++++++. .++.|.+||+.+++....... ......+.+++++.+.++...+ ...|.+||..
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 344566665 488999999999887644321 1235678899988877776543 1489999999
Q ss_pred CCeeEEeecC--CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEE-eccccccceeEEEEeC-CCCEEEEE----
Q 002234 868 NYNMVGSLPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIET-LQTGTSGKVQCMALDD-NEEFLVIG---- 937 (949)
Q Consensus 868 ~~~~~~~~~~--~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~-l~~~h~~~I~~l~~sp-dg~~L~sg---- 937 (949)
+++....+.. ......++++|| .++++.. .|.+||..+++.... +...+......++++| ++...++.
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y 289 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY 289 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc
Confidence 9998877663 457899999986 6666654 899999998875421 1111245689999999 55555665
Q ss_pred eCCCcEEEEeCC
Q 002234 938 TSDGRIQAWGLS 949 (949)
Q Consensus 938 s~Dg~I~iWdl~ 949 (949)
..+|+|.+||.+
T Consensus 290 ~~~~~V~v~d~~ 301 (328)
T 3dsm_A 290 QQQGIVYRYSPQ 301 (328)
T ss_dssp SSEEEEEEECTT
T ss_pred ccCCEEEEECCC
Confidence 578999999863
No 186
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=138.77 Aligned_cols=69 Identities=22% Similarity=0.343 Sum_probs=63.0
Q ss_pred CCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC-CCCCccHHHHHHHHHHHH
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST-KLPKTNYVLKRLIASWQE 84 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~-~~~~~n~~l~~~i~~~~~ 84 (949)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.||+.+... .+ .+|..|+++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l-~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIM-IPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC-CBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCC-CCCHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999997666899999999988 66 599999999999873
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=8e-12 Score=138.30 Aligned_cols=250 Identities=9% Similarity=-0.025 Sum_probs=160.1
Q ss_pred cccEEEEec---------CCCCeEEEecCCc-eeeecCCCCceEEEEEeCC--EEEEEeCC---C--cEEEEecCCCcee
Q 002234 639 EMVKVLSNG---------HDSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSGHSD---G--TIKVWTGRGSILH 701 (949)
Q Consensus 639 ~~~~l~s~s---------~dg~I~vWd~~~~-~~~~~~h~~~V~~l~~s~d--~lasgs~D---g--~I~vWd~~t~~~~ 701 (949)
||.+++... .++.|.+||..+. ...+ ..+..+.|||| +|+.++.+ + .|.+||+.++ +
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~ 96 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--S 96 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--E
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--c
Confidence 788776642 2567888998742 2222 56889999997 67766643 3 3888899888 3
Q ss_pred eeEEecccCCCEEEEEEecCCCEEEEEeCC---------------------------CcEEEEECCCCee-EEEEeecCC
Q 002234 702 LIQQIREHTKAVTGLAILQSGEMLYSGSLD---------------------------KTARVWSIGNEEI-HCVQVHDIK 753 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---------------------------g~I~vWd~~~~~~-~~~~~~~~~ 753 (949)
...... +.. +..+.|+|||+.|+.++.+ ..|.+||+.+++. ..+.. .
T Consensus 97 ~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~ 171 (347)
T 2gop_A 97 SKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P 171 (347)
T ss_dssp EEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E
T ss_pred eEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C
Confidence 333332 334 9999999999999888743 5789999988864 33332 1
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC-CCcEEEEECCCCceeeeecccccc
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKL 832 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~ 832 (949)
.+..+. |+|+| .+++...++. .. ... ...|.++| +++... +
T Consensus 172 -~~~~~~-------~spdg-~~~~~~~~~~-------~~-------------~~~~~~~l~~~d--~~~~~~-------l 213 (347)
T 2gop_A 172 -RFSSGI-------WHRDK-IVVNVPHREI-------IP-------------QYFKFWDIYIWE--DGKEEK-------M 213 (347)
T ss_dssp -TTCEEE-------EETTE-EEEEEECCCS-------SC-------------CSSCCEEEEEEE--TTEEEE-------E
T ss_pred -Cccccc-------CCCCe-EEEEEecccc-------cc-------------cccccccEEEeC--CCceEE-------e
Confidence 444444 88888 4333222110 00 000 11344445 444322 1
Q ss_pred cCCCCCEEEEEEeCCceEEEEEECCC-------CEEEEEECCCCeeEEeec-CCCcEEE-EEEcCC-EEEEEECCCeEEE
Q 002234 833 LGKANPVHALQVHNGLVYTASTSLDG-------AAVKMWSTSNYNMVGSLP-TLSEVRA-MVVSSE-LVYLGCKGGTVEI 902 (949)
Q Consensus 833 ~~h~~~V~~l~~~~~~~~l~s~s~Dg-------~~I~iwd~~~~~~~~~~~-~~~~v~~-l~~s~d-~l~sgs~dg~I~v 902 (949)
..+ ..+..+ +|++.+++..+.++ ..|.+|| +++...... +...+.. +.|+ | .+++++.++.+++
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l 287 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNL 287 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEE
Confidence 122 344444 88998877776442 3788888 555544444 3566776 8999 7 6777889999999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcE-EEEeC
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI-QAWGL 948 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I-~iWdl 948 (949)
| +.+++....+ .+.+.|.+++|+| .++++++.+++. .+|.+
T Consensus 288 ~-~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 288 Y-IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp E-EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred E-EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 9 8766654443 3467899999999 678888877765 77764
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=4.9e-12 Score=135.61 Aligned_cols=219 Identities=10% Similarity=0.073 Sum_probs=154.8
Q ss_pred eCC-EEEEEeCCCcEEEEecCCCceeeeEEecccC-CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCC
Q 002234 677 FRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD 754 (949)
Q Consensus 677 s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~ 754 (949)
+|+ .|++++.|+.|.+||.+++ +.+.++..+. ..+.++.++|+|++++ +.++.|..||. +|+..-........
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 455 8999999999999999999 7888888776 5789999999999888 45778999999 66422111111122
Q ss_pred ceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC-CCcEEEEECCCCceeeeeccccccc
Q 002234 755 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKLL 833 (949)
Q Consensus 755 ~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~ 833 (949)
.+.+.. +.++|+. +++.+. ++.|..+|. +|+.+..+.......
T Consensus 78 ~~~~~~-------~~~dG~~----------------------------lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 78 EMQTAR-------ILPDGNA----------------------------LVAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp EEEEEE-------ECTTSCE----------------------------EEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred cccccE-------ECCCCCE----------------------------EEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 344444 7777775 344444 555666664 455543332111111
Q ss_pred CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEE
Q 002234 834 GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 911 (949)
Q Consensus 834 ~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~ 911 (949)
++......+.+.+++.++++...++ .|..||.. |+.+.++.....+.++.+.++ .+++++.++.|..+|..+|+.+
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred cccccccCceECCCCCEEEEecCCC-EEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 2223455667889999999887775 99999998 999999886666667777766 6777777889999999999999
Q ss_pred EEeccc-----cccceeEEEEeCCCCEEEEEe
Q 002234 912 ETLQTG-----TSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 912 ~~l~~~-----h~~~I~~l~~spdg~~L~sgs 938 (949)
.++... ....+..+...++|+++++..
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 988421 112378888999999888873
No 189
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=3.1e-12 Score=143.96 Aligned_cols=268 Identities=10% Similarity=-0.024 Sum_probs=166.1
Q ss_pred ceeeecCCCCceEE-----EEEeCC--EEEEEeC-CCc--EEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe
Q 002234 660 LVHVDSSENGKVLS-----IACFRD--KIFSGHS-DGT--IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS 729 (949)
Q Consensus 660 ~~~~~~~h~~~V~~-----l~~s~d--~lasgs~-Dg~--I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs 729 (949)
....+..|.+.... .+|+|| +|+.++. +|. |.+||+.++ +......+|...+..+.|+|||+.|+.++
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 34455566666666 889997 7777776 674 888899998 55555666666666788999999999999
Q ss_pred CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC
Q 002234 730 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 809 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D 809 (949)
.++.|++||+.+++...+.... ...+.... ..++|+|+.++....++.- |..... ...+ ...+....+
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~-----~~~~~dg~~l~~~~~~~~~--~~~~~~--~~~~--~~~~~~~~~ 167 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVP-AEWVGYGT-----WVANSDCTKLVGIEIRRED--WVPLTD--WKKF--HEFYFTKPC 167 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECC-TTEEEEEE-----EEECTTSSEEEEEEEEGGG--CCCCCS--HHHH--HHHGGGCCC
T ss_pred CCCeEEEEECCCCcceeeeech-hhcccccc-----eeECCCCCeeccccccCcc--cccccc--cchh--hhhhccCCc
Confidence 9999999999998644333221 22222221 1257888776532211000 000000 0000 000112345
Q ss_pred CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCC-----CEEEEEECCCCeeEEeecCC--CcE
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG-----AAVKMWSTSNYNMVGSLPTL--SEV 881 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg-----~~I~iwd~~~~~~~~~~~~~--~~v 881 (949)
+.|.+||+.+++... +..+...+..+.|+| ++..++..+.++ ..|.+||...+.......+. ..+
T Consensus 168 ~~l~~~d~~~g~~~~-------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 168 CRLMRVDLKTGESTV-------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp EEEEEEETTTCCEEE-------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred ceEEEEECCCCceEE-------eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 789999999987643 233456789999999 999888776531 37888888765544433333 357
Q ss_pred EEEEEcCC--EEEEEE-CCC----eEEEEECCCCcEE--EEecccccc---ceeEEEEeCCCCEEEEE---------eCC
Q 002234 882 RAMVVSSE--LVYLGC-KGG----TVEIWDQKRQIRI--ETLQTGTSG---KVQCMALDDNEEFLVIG---------TSD 940 (949)
Q Consensus 882 ~~l~~s~d--~l~sgs-~dg----~I~vwd~~~~~~~--~~l~~~h~~---~I~~l~~spdg~~L~sg---------s~D 940 (949)
....|+|| .++..+ .++ .|++||+.+++.. ..+. ++.. ......|+|||+.|+.. ..+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 78899999 454433 222 3999999998743 3332 2111 12334799999988754 456
Q ss_pred CcEEEEeCC
Q 002234 941 GRIQAWGLS 949 (949)
Q Consensus 941 g~I~iWdl~ 949 (949)
+.|++||++
T Consensus 320 ~~i~~~d~~ 328 (388)
T 3pe7_A 320 PFLYVFNMK 328 (388)
T ss_dssp CEEEEEETT
T ss_pred CEEEEEecc
Confidence 789999974
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.48 E-value=9.7e-12 Score=134.61 Aligned_cols=251 Identities=10% Similarity=0.051 Sum_probs=161.6
Q ss_pred eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 662 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 662 ~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
..+..+.....+++|+|+ +++++..++.|..||..++ ...+..+...+.+++|+|+|+++++...++.|.+||
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 444456667889999985 6888889999999999876 344556778899999999999888887789999999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECC
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 818 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~ 818 (949)
..+++...+......... ..+..+++.|+|+..++....+....+.... .......+.|..||..
T Consensus 97 ~~~g~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~-----------~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKL----NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG-----------GEMELPGRWVFRLAPD 161 (296)
T ss_dssp STTCCEEEEECEETTEEC----CCCCCEEECTTSCEEEEECSHHHHCGGGSSC-----------CCCCSSSCEEEEECTT
T ss_pred CCCCcEEEEeeccCCCCC----CCCCCEEECCCCCEEEECCcccccccccccc-----------ccccCCCcEEEEECCC
Confidence 988764433221111000 0122334777776432211000000000000 0000013455566655
Q ss_pred CCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC-CCee---EEeec-CCCcEEEEEEcCC-EEE
Q 002234 819 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNM---VGSLP-TLSEVRAMVVSSE-LVY 892 (949)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-~~~~---~~~~~-~~~~v~~l~~s~d-~l~ 892 (949)
+... .+..+....+.++|+|++..+++.+.+ +.|.+||+. ++.. ...+. +...+.+++++++ .++
T Consensus 162 -g~~~-------~~~~~~~~~~gi~~s~dg~~lv~~~~~-~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 232 (296)
T 3e5z_A 162 -GTLS-------APIRDRVKPNGLAFLPSGNLLVSDTGD-NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW 232 (296)
T ss_dssp -SCEE-------EEECCCSSEEEEEECTTSCEEEEETTT-TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE
T ss_pred -CCEE-------EeecCCCCCccEEECCCCCEEEEeCCC-CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE
Confidence 4432 223344567899999999888555555 499999987 4544 23332 3445678999988 566
Q ss_pred EEECCCeEEEEECCCCcEEEEeccccccceeEEEE-eCCCCEEEEEeCCCcEE
Q 002234 893 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL-DDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 893 sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~-spdg~~L~sgs~Dg~I~ 944 (949)
+++ ++.|.+||.. ++.+..+. .+.. +++++| +||++.|++++.+|..+
T Consensus 233 v~~-~~~v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 233 ASA-GDGVHVLTPD-GDELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp EEE-TTEEEEECTT-SCEEEEEE-CSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred EEc-CCeEEEECCC-CCEEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 666 8899999986 77777774 4555 999999 58999999998875443
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.48 E-value=1.1e-11 Score=151.66 Aligned_cols=273 Identities=14% Similarity=0.071 Sum_probs=172.5
Q ss_pred ccccccEEEEecCC-CC--eEEEecC--C-cee-------eecCCCCceEEEEEeCC--EEEEEeCC-C----cEEEEec
Q 002234 636 LAFEMVKVLSNGHD-SS--ADFWNHR--E-LVH-------VDSSENGKVLSIACFRD--KIFSGHSD-G----TIKVWTG 695 (949)
Q Consensus 636 ~~~~~~~l~s~s~d-g~--I~vWd~~--~-~~~-------~~~~h~~~V~~l~~s~d--~lasgs~D-g----~I~vWd~ 695 (949)
..++|.+++....+ +. -.+|-.. . ... ...+|+..+..++|||| +|+.++.+ | +|++||+
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 34788877655433 21 2355432 1 111 12245557899999997 66655543 3 8999999
Q ss_pred CCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCc----------------EEEEECCCCeeE--EE-EeecCCCce
Q 002234 696 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT----------------ARVWSIGNEEIH--CV-QVHDIKDQI 756 (949)
Q Consensus 696 ~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~----------------I~vWd~~~~~~~--~~-~~~~~~~~v 756 (949)
.++ +.+.....+. .+..++|+|||+.|+.++.|+. |++|++.++... .+ ....+...+
T Consensus 159 ~tg--~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 159 DGA--KELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp TTT--EEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred CCC--CCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 999 4443222222 3678999999999999998876 999999887522 21 111123334
Q ss_pred eeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCC------Cc-eeeeeccc
Q 002234 757 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT------GT-FATIQTGH 829 (949)
Q Consensus 757 ~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~------~~-~~~~~~~~ 829 (949)
..+. |+|||++++.....+. ..+..|.+||+.+ +. ..
T Consensus 236 ~~~~-------~SpDg~~l~~~~~~~~-----------------------~~~~~l~~~d~~~~~~~~~~~~~~------ 279 (710)
T 2xdw_A 236 GGAE-------LSDDGRYVLLSIREGC-----------------------DPVNRLWYCDLQQESNGITGILKW------ 279 (710)
T ss_dssp EEEE-------ECTTSCEEEEEEECSS-----------------------SSCCEEEEEEGGGSSSSSCSSCCC------
T ss_pred EEEE-------EcCCCCEEEEEEEccC-----------------------CCccEEEEEECcccccccCCccce------
Confidence 4444 8999998654432210 0156789999876 42 12
Q ss_pred ccccCCCCCEEEEEEeCCceEEEEEECCC---CEEEEEECCCCee---EEeecCCC--cEEEEEEcCC--EEEEEECCC-
Q 002234 830 RKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNM---VGSLPTLS--EVRAMVVSSE--LVYLGCKGG- 898 (949)
Q Consensus 830 ~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg---~~I~iwd~~~~~~---~~~~~~~~--~v~~l~~s~d--~l~sgs~dg- 898 (949)
..+..+...+.. .|++++..++..+.++ ..|.+||+.++.. ...+.+.. .+..+.|+++ ++++...++
T Consensus 280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 233344444544 3666666555544432 3799999987642 23333433 6888999844 567777777
Q ss_pred -eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEE-e---CCCcEEEEeCC
Q 002234 899 -TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG-T---SDGRIQAWGLS 949 (949)
Q Consensus 899 -~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg-s---~Dg~I~iWdl~ 949 (949)
.|++||+.+++.+..+. .+.+.|..+.++|+++.++.. + ..++|..||+.
T Consensus 359 ~~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 359 NTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred EEEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 46677887888777774 567789999999999766633 2 35789999863
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.48 E-value=2.5e-12 Score=157.12 Aligned_cols=275 Identities=11% Similarity=0.015 Sum_probs=173.4
Q ss_pred ccccccccccEEEEecCCC---CeEEEecC----Cceeee------cCCCCceEEEEEeCC--EEE-----EEeCCCcEE
Q 002234 632 KYSPLAFEMVKVLSNGHDS---SADFWNHR----ELVHVD------SSENGKVLSIACFRD--KIF-----SGHSDGTIK 691 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~dg---~I~vWd~~----~~~~~~------~~h~~~V~~l~~s~d--~la-----sgs~Dg~I~ 691 (949)
......++|.+++....++ .-.+|... .....+ .+|+..+.+++|||| +|+ +|+.+.+|+
T Consensus 71 ~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~ 150 (695)
T 2bkl_A 71 SVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH 150 (695)
T ss_dssp EECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred cCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence 3444557898887766544 35566543 112221 246667999999997 565 344456899
Q ss_pred EEecCCCceeeeEEecccCCCE--EEEEEecCCCEEEEEeCCCc-------------EEEEECCCCee--EEEE-eecCC
Q 002234 692 VWTGRGSILHLIQQIREHTKAV--TGLAILQSGEMLYSGSLDKT-------------ARVWSIGNEEI--HCVQ-VHDIK 753 (949)
Q Consensus 692 vWd~~t~~~~~i~~l~~H~~~V--~~v~fspdg~~L~Sgs~Dg~-------------I~vWd~~~~~~--~~~~-~~~~~ 753 (949)
+||+.+++ .+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++.. ..+. ...+.
T Consensus 151 v~dl~tg~--~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 151 VIDVDSGE--WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp EEETTTCC--BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred EEECCCCC--CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 99999983 331 1122222 67899999999999999877 99999998752 1222 12223
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccccccc
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL 833 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 833 (949)
..+..+. |+|||+.+++...++. ....|.+||..++... .+.
T Consensus 227 ~~~~~~~-------~SpDG~~l~~~~~~~~------------------------~~~~l~~~~~~~~~~~-------~l~ 268 (695)
T 2bkl_A 227 TTFLQSD-------LSRDGKYLFVYILRGW------------------------SENDVYWKRPGEKDFR-------LLV 268 (695)
T ss_dssp TCEEEEE-------ECTTSCCEEEEEEETT------------------------TEEEEEEECTTCSSCE-------EEE
T ss_pred EEEEEEE-------ECCCCCEEEEEEeCCC------------------------CceEEEEEcCCCCceE-------Eee
Confidence 3455555 8999987544332210 0125666665555433 222
Q ss_pred CCCCCEEEEEEeCCceEEEEEECC--CCEEEEEECCCCee---EEeecC--CCcEEEEEEcCC-EEEEEECCCeEEEEEC
Q 002234 834 GKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSNYNM---VGSLPT--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQ 905 (949)
Q Consensus 834 ~h~~~V~~l~~~~~~~~l~s~s~D--g~~I~iwd~~~~~~---~~~~~~--~~~v~~l~~s~d-~l~sgs~dg~I~vwd~ 905 (949)
.+...+....++++. +++.+..+ +..|.+||+.++.. ...+.+ ...+..++++.+ .+++...|+..++|.+
T Consensus 269 ~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 269 KGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp ECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEE
Confidence 334455556665555 55554422 25999999987653 333433 456788888876 6777888998888865
Q ss_pred C-CCcEEEEeccccccceeEEEEeCCCCEEEEE----eCCCcEEEEeCC
Q 002234 906 K-RQIRIETLQTGTSGKVQCMALDDNEEFLVIG----TSDGRIQAWGLS 949 (949)
Q Consensus 906 ~-~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg----s~Dg~I~iWdl~ 949 (949)
. +++....+...+.+.|..++++||++.++.. ...++|++||+.
T Consensus 348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 4 4556666643336678899999999877633 335789999873
No 193
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.47 E-value=1.3e-12 Score=150.79 Aligned_cols=316 Identities=13% Similarity=0.114 Sum_probs=205.9
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccce
Q 002234 125 KHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 204 (949)
Q Consensus 125 ~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~ 204 (949)
..++..|.+. ..+.++.|+..++.++...++++ ..+...+++..|+++|. +.++.+++.|+.+|.+|+..++.++
T Consensus 5 ~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~---~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 5 PKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAK---QQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp HHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHH---HHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHH---HHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4455666544 33557888888888874333323 23556777888888887 4688999999999999988778888
Q ss_pred eeccccCCcHHHHHHHHh-hC----hhhHHHHHHhcCCCh---HHHHHhhhhHHHHHHHHh--------ccccchhcccC
Q 002234 205 HTLTRVESDVERIVALFK-KG----LLEAVVLIDLLRPST---RTLIEMDMMESLMTVIKK--------KEEDFLKMCLK 268 (949)
Q Consensus 205 ~~i~~~~~~i~~l~~llk-~g----~~~Aa~~l~~L~~~~---~~~~~~~~~~~lv~~l~~--------~~~~~~~~~~~ 268 (949)
..|. ..|+++.|+.+|+ .+ ..+|+.+|++|+..+ ..+.. +.+|+|+.+|.. .... .+-...
T Consensus 80 ~~i~-~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~-~~e~~~ 156 (457)
T 1xm9_A 80 LETR-RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNM-SREVVD 156 (457)
T ss_dssp HHHH-HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC----------CCC
T ss_pred HHHH-HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccch-hccccc
Confidence 8887 6799999999998 66 678899999996443 33556 788999999942 2100 000000
Q ss_pred ch--hhHHHHHHHHhcCCcccccccchhh---------------------------------------------------
Q 002234 269 PK--SVSVLLLGQMIGDSEESIVSSIANT--------------------------------------------------- 295 (949)
Q Consensus 269 ~~--~a~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 295 (949)
+. ..|...|..| +.+++++..
T Consensus 157 ~~v~~~a~~aL~nL------s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 157 PEVFFNATGCLRNL------SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp HHHHHHHHHHHHHH------TTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred HHHHHHHHHHHHHH------ccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 00 0011111111 111233333
Q ss_pred ------------------------------------------------hcchhhHHHHHHhhhc-ccHHHHHHHHHHHHH
Q 002234 296 ------------------------------------------------IVSSKVFESVISSLEA-EWAEERIAAVGILLR 326 (949)
Q Consensus 296 ------------------------------------------------i~~~g~i~~l~~~l~~-~~~~~~~~a~~~l~~ 326 (949)
+...|+++.|+.+|+. ++.+.++.|+.+|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 4445555666666653 246667788888888
Q ss_pred hhhccCCc-----hhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHH
Q 002234 327 CMQEDGKC-----RNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYL 401 (949)
Q Consensus 327 ~~~~~~~~-----r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l 401 (949)
++..++.. +..+.+.+.+++|++||++++.+.+..|..+|.+|..-.+ +. ..|.+ | .|..|+.+|
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~---~~---~~i~~-~---~i~~Lv~lL 380 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL---LH---RVMGN-Q---VFPEVTRLL 380 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG---GH---HHHHH-H---THHHHHHTT
T ss_pred hccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH---HH---HHHHH-h---hhHHHHHhc
Confidence 87766654 3345578999999999999999999999999999976432 22 23333 3 357799999
Q ss_pred hhcCCccc---hhHHHHHHhhhcc---cCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 402 QTANHDQC---PVVAGLLLQLDLL---AEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 402 ~~~~~~~~---~~~a~~l~~l~~l---~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
....++.+ ..+..++.-|..+ .......+...++++.|+..++++..++.+..|+.+|.++..
T Consensus 381 ~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp TSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 88765422 1222333323222 222334455678999999999999555778889988888754
No 194
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.4e-14 Score=144.74 Aligned_cols=72 Identities=17% Similarity=0.389 Sum_probs=64.4
Q ss_pred CCCCcccCcCccccccCceec-CCCccccHHHHHHHHhc-CCCCCCC--CCCCCCCCCCCCccHHHHHHHHHHHHHC
Q 002234 14 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPI--TRQKLSSTKLPKTNYVLKRLIASWQEQN 86 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~-~~~~CP~--c~~~~~~~~~~~~n~~l~~~i~~~~~~~ 86 (949)
....+|.||||+++|+|||+. .|||+|||.||.+|+.. +...||+ |++.+....+. ||..|+++|+.|+.+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~-pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV-RDPIMELRCKIAKMKE 252 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE-ECHHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC-cCHHHHHHHHHHHHHH
Confidence 457899999999999999985 99999999999999876 3457999 99999999995 9999999999998753
No 195
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.46 E-value=1.2e-12 Score=152.32 Aligned_cols=323 Identities=13% Similarity=0.042 Sum_probs=221.3
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhccc-Cc
Q 002234 123 ELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR-DK 201 (949)
Q Consensus 123 el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~-~~ 201 (949)
.+..+|..|.+.+ .+.+++|+..|..++....+++.. +...+++..||.+|.. .+..+++.|+.+|.+|+.. +.
T Consensus 49 ~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~---V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 49 ELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTD---VRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHH---HHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCH
T ss_pred cHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHH---HHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCH
Confidence 3555677776543 344778888888887655444443 6666778888888854 6899999999999999775 57
Q ss_pred cceeeccccCCcHHHHHHHHhhC-----hhhHHHHHHhcCCChHHHHHhh--hhHHHHHHHH---hccccch----hc--
Q 002234 202 SVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTRTLIEMD--MMESLMTVIK---KKEEDFL----KM-- 265 (949)
Q Consensus 202 ~~~~~i~~~~~~i~~l~~llk~g-----~~~Aa~~l~~L~~~~~~~~~~~--~~~~lv~~l~---~~~~~~~----~~-- 265 (949)
.++..|. ..|+|+.|+.+|+.+ ...|+.+|.+|+..++++..|. .+|+|+++|. .|..+.. +.
T Consensus 124 ~nk~~I~-~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIK-NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHH-HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 7888887 679999999999984 4677889999998887766653 4599999873 2211100 00
Q ss_pred ccCch--hhHHHHHHHHhcCCcccccc-cchhhhcchhh-HHHHHHhhhc------ccHHHHHHHHHHHHHhhhcc----
Q 002234 266 CLKPK--SVSVLLLGQMIGDSEESIVS-SIANTIVSSKV-FESVISSLEA------EWAEERIAAVGILLRCMQED---- 331 (949)
Q Consensus 266 ~~~~~--~a~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~-i~~l~~~l~~------~~~~~~~~a~~~l~~~~~~~---- 331 (949)
...+. .-|...|..| +... +++.+|++.+| ++.||..++. .+.+..+.|+.+|.++.-..
T Consensus 203 ~~d~~V~~nAa~~L~NL------s~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNV------SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp CCCHHHHHHHHHHHHHH------TSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccHHHHHHHHHHHHHH------hcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 00000 1123333222 4444 45888887655 5899999985 35567788999987644220
Q ss_pred ---------------------CCchhhHhhhcCchhhHHHHHh-cCCcchhHHHHHHHHhhhccccchhHHHHHHhhccC
Q 002234 332 ---------------------GKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEG 389 (949)
Q Consensus 332 ---------------------~~~r~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~ 389 (949)
...-..+.+...+++++.||+. .+...++.|+.+|.+|..- +......+.+.|.++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag-~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAG-RWTYGRYIRSALRQEK 355 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHTSHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHcC
Confidence 0011122333445678888875 5677788999999999653 2222334555677788
Q ss_pred CchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCC-------hHHHHHHHHHHHhc
Q 002234 390 TYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDY-------PAAQLAAAKTIVSL 462 (949)
Q Consensus 390 ~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~-------~~~~~~~~~~l~~l 462 (949)
++ ..|+.+|+...++.+--|+++|-+|..- ...+. ....+++..|+..|.+++. .+++..|+.+|.||
T Consensus 356 gl---p~Lv~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 356 AL---SAIADLLTNEHERVVKAASGALRNLAVD-ARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HH---HHHHHGGGCSCHHHHHHHHHHHHHHHTT-CSCHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cH---HHHHHHHcCCCHHHHHHHHHHHHHHhCC-hhHHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 76 5599999999999999999999999653 23343 3488999999999999852 35677788899887
Q ss_pred C
Q 002234 463 Q 463 (949)
Q Consensus 463 ~ 463 (949)
.
T Consensus 431 ~ 431 (584)
T 3l6x_A 431 I 431 (584)
T ss_dssp H
T ss_pred h
Confidence 4
No 196
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.45 E-value=3.2e-13 Score=159.21 Aligned_cols=320 Identities=10% Similarity=0.089 Sum_probs=235.5
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccc
Q 002234 124 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 203 (949)
Q Consensus 124 l~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~ 203 (949)
+..++..+.+. ..+.+..|+..++++... +.++.+. .+...+++..||++|..+.+++++..|..+|.++++.+...
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~-~~~~~i~-~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSR-EKQPPID-NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTS-SSCCCHH-HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcC-CCCchHH-HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 45567777654 446678888888887532 2333332 24566788889999988888999999999999998877766
Q ss_pred eeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCC-ChHH---HHHhhhhHHHHHHHHhccccchhcccCchhhHHH
Q 002234 204 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRT---LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 275 (949)
Q Consensus 204 ~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~-~~~~---~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~ 275 (949)
.+.+. ..|+++.|+.+|+.+ ...|+.+|.+|.. .++. +...+.+++|+.+|.......... .-...+..
T Consensus 155 ~~~vv-~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~--~~~~~a~~ 231 (529)
T 3tpo_A 155 TKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC--GYLRNLTW 231 (529)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH--HHHHHHHH
T ss_pred HHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH--HHHHHHHH
Confidence 66777 789999999999987 6788889999964 3333 345566799999998754221000 00111233
Q ss_pred HHHHHhcCCcccccccchhh-hcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhc
Q 002234 276 LLGQMIGDSEESIVSSIANT-IVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA 354 (949)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~-i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~ 354 (949)
.+..+ ..+...... ....|++|.|+.++..++.+.+..|+.+|..+..........+.+.+.+++|+.+|.+.
T Consensus 232 ~L~nl------~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 232 TLSNL------CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHH------HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHH------HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 33333 222222222 33467889999999999999999999999999888888888899999999999999999
Q ss_pred CCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHH
Q 002234 355 SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREE 434 (949)
Q Consensus 355 ~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~ 434 (949)
+...+..|+.+|.+++... ......|-+.|.++. |+.+|+...++-+--|++.|.++..-....+..+...+
T Consensus 306 ~~~v~~~a~~aL~nl~~~~-----~~~~~~i~~~g~l~~---L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHccc-----hHHHHHHhhcccHHH---HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 9999999999999997642 233444666777755 78888888888888899999998653333444555677
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 435 AIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 435 ~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
+++.|+..|.+++. .+|..|+.||.||.-
T Consensus 378 ~i~~Lv~lL~~~~~-~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 378 LVPFLVGVLSKADF-KTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHHHSSCH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCH-HHHHHHHHHHHHHHc
Confidence 89999999998875 568899999999853
No 197
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.9e-14 Score=124.30 Aligned_cols=70 Identities=19% Similarity=0.402 Sum_probs=59.5
Q ss_pred CCCCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcC-----CCCCCCCCCCCCCCCCCCccHHHHHHH
Q 002234 9 GIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLSSTKLPKTNYVLKRLI 79 (949)
Q Consensus 9 ~~~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~-----~~~CP~c~~~~~~~~~~~~n~~l~~~i 79 (949)
......+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.||+.+....+. +|+.|+++|
T Consensus 10 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~-~n~~l~~~v 84 (85)
T 2ecw_A 10 SSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK-PNLHVANIV 84 (85)
T ss_dssp CCCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE-ECSCCCSSC
T ss_pred HHHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC-cCHHHHHhh
Confidence 34445688999999999999999999999999999999999873 55899999999988884 887765543
No 198
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.45 E-value=3.4e-14 Score=130.64 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 002234 2 ADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIAS 81 (949)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~ 81 (949)
++.+.-+......+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.||.++....+. +|..+++.|.+
T Consensus 2 ~~~~g~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~l~~~i~~ 80 (118)
T 3hct_A 2 EEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF-PDNFAKREILS 80 (118)
T ss_dssp ---CCBCSCBSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE-ECHHHHHHHHT
T ss_pred CCcCCCChhhccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc-cCHHHHHHHcc
Confidence 33333344445678899999999999999999999999999999999987666999999999988885 99999999987
Q ss_pred HHHHC
Q 002234 82 WQEQN 86 (949)
Q Consensus 82 ~~~~~ 86 (949)
+...-
T Consensus 81 l~v~C 85 (118)
T 3hct_A 81 LMVKC 85 (118)
T ss_dssp SEEEC
T ss_pred ceeEC
Confidence 65443
No 199
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=9.2e-14 Score=116.05 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=52.0
Q ss_pred CCCCCCCCCcccCcCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCcc
Q 002234 9 GIGKHTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLPKTN 72 (949)
Q Consensus 9 ~~~~~~~~~~~~Cpic~~~~~dPv~~~-cghtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~~n 72 (949)
......+++++.||||+++|.+||+++ |||+||+.||.+|+... ...||.||+.+...+.+.+|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 344557889999999999999999999 99999999999999863 35899999986543332254
No 200
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.44 E-value=9.7e-14 Score=153.23 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC---------------hhhHHHHHHhcCCChH-HHHHh--
Q 002234 184 RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---------------LLEAVVLIDLLRPSTR-TLIEM-- 245 (949)
Q Consensus 184 ~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g---------------~~~Aa~~l~~L~~~~~-~~~~~-- 245 (949)
..+..|+.+|.+++. ++++++.|. ..|++++|+.+|+.. ..+|+.+|.+|...++ ++..+
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~-~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMN-ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHH-HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHH-HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445578999999954 567777777 789999999999521 5689999999986543 55444
Q ss_pred -hh-hHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhh-hcccHHHHHHHHH
Q 002234 246 -DM-MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSL-EAEWAEERIAAVG 322 (949)
Q Consensus 246 -~~-~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l-~~~~~~~~~~a~~ 322 (949)
+. +|+||.+|+.++.+. +..|...|..|-.+ .+..++..|++.|+||+|+++| ++++.+.+..|+.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v-------~~~A~~aL~nLs~~----~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~ 193 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDL-------QQVIASVLRNLSWR----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHH-------HHHHHHHHHHHHTT----CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHH-------HHHHHHHHHHHhcc----CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 34 799999999764321 12233333333111 2356889999999999999974 6788899999999
Q ss_pred HHHHhhhccCCchhhHh-hhcCchhhHHHHHhcCCc----chhHHHHHHHHhhhc-cccchhHHHHHHhhccCCchhHHH
Q 002234 323 ILLRCMQEDGKCRNSIA-DKAELAPVMESFMAASDG----ERFEIVCFLSELVKL-NRRTFNEQILHIIKDEGTYSSMHT 396 (949)
Q Consensus 323 ~l~~~~~~~~~~r~~~~-~~~~~~~l~~ll~~~~~~----~~~~~~~~l~~l~~~-~r~~~~~~~l~~i~~~~~~~~~~~ 396 (949)
+|.++...+...+..+. ..|.+++|+++|+++++. .+..|..+|.+|... .. ..+..+.|.+.|.+ ..
T Consensus 194 aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i---~~ 267 (354)
T 3nmw_A 194 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCL---QT 267 (354)
T ss_dssp HHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHH---HH
T ss_pred HHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCH---HH
Confidence 99888664444566666 799999999999987764 577888888888641 11 23344567788877 56
Q ss_pred HHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 397 LLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 397 l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
|+.+|+.+..+-+.-|++.|.+|..-.+..+.-+.++++++.|++.|++++. ..++.|+.||.||.-
T Consensus 268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~-~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSH-HHHHHHHHHHHHHHT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHc
Confidence 9999999998888899999999964333345556788899999999998764 568899999999854
No 201
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.44 E-value=5.1e-11 Score=128.04 Aligned_cols=231 Identities=7% Similarity=0.096 Sum_probs=153.6
Q ss_pred cccccccEEEEecCCCCeEEEecCCc-eeeec------CCCCceEEEEEe-CC-EEEEEe-C-CCcEEEEecCCCceeee
Q 002234 635 PLAFEMVKVLSNGHDSSADFWNHREL-VHVDS------SENGKVLSIACF-RD-KIFSGH-S-DGTIKVWTGRGSILHLI 703 (949)
Q Consensus 635 ~~~~~~~~l~s~s~dg~I~vWd~~~~-~~~~~------~h~~~V~~l~~s-~d-~lasgs-~-Dg~I~vWd~~t~~~~~i 703 (949)
.+..++..+++...++.|.+||.... ...+. +|...+.+++++ ++ .++.++ . ++.|.+||. ++ ..+
T Consensus 36 ~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g--~~~ 112 (286)
T 1q7f_A 36 AVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG--QFV 112 (286)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS--CEE
T ss_pred EECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC--cEE
Confidence 34556777888888999999998732 22221 344678999995 54 444444 3 899999994 45 455
Q ss_pred EEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 704 QQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 704 ~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
..+. .+...+..++++|+|+++++.+.++.|.+||.................+..+. ++++|+.
T Consensus 113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~-------~~~~g~l-------- 177 (286)
T 1q7f_A 113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVV-------VNDKQEI-------- 177 (286)
T ss_dssp EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEE-------ECSSSEE--------
T ss_pred EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEE-------ECCCCCE--------
Confidence 5553 34567899999999998888888899999997653222221111112233333 5555532
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEE
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 862 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~ 862 (949)
+++.+.++.|++||.. +.....+.. .++...+..+++++++.++++...+++.|.
T Consensus 178 --------------------~v~~~~~~~i~~~~~~-g~~~~~~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~ 232 (286)
T 1q7f_A 178 --------------------FISDNRAHCVKVFNYE-GQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNLT 232 (286)
T ss_dssp --------------------EEEEGGGTEEEEEETT-CCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred --------------------EEEECCCCEEEEEcCC-CCEEEEEcc----CCccCCCcEEEECCCCCEEEEeCCCCEEEE
Confidence 3444568899999974 444432211 223357899999999988887765533999
Q ss_pred EEECCCCeeEEeec-C--CCcEEEEEEcCC-EEEEEECCCeEEEEECCCCc
Q 002234 863 MWSTSNYNMVGSLP-T--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 863 iwd~~~~~~~~~~~-~--~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~ 909 (949)
+||. +++.+..+. + ...+.+++++|+ .+++++.+++|++|+.....
T Consensus 233 ~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 233 IFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp EECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred EECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccccc
Confidence 9995 566666665 2 235789999998 55556789999999986543
No 202
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.44 E-value=1.6e-13 Score=151.45 Aligned_cols=238 Identities=14% Similarity=0.067 Sum_probs=175.7
Q ss_pred hchhhHHhhhhhhhcc----------CCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHH
Q 002234 164 LSKPAVINGFVEILFN----------SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAV 229 (949)
Q Consensus 164 l~~~~~~~~l~~~l~~----------s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa 229 (949)
+...+++..++.+|.. ..+..+++.|..+|.+|...++.++..|....|+|+.|+.+|+++ ...|+
T Consensus 69 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~ 148 (354)
T 3nmw_A 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148 (354)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHH
Confidence 5556667778887742 124678999999999997666667766765667899999999987 56788
Q ss_pred HHHHhcCCC--hHHHHHh---hhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccc-cccchhhhc-chhhH
Q 002234 230 VLIDLLRPS--TRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI-VSSIANTIV-SSKVF 302 (949)
Q Consensus 230 ~~l~~L~~~--~~~~~~~---~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~i~-~~g~i 302 (949)
.+|.+|+.. ++++..+ +.+|+||++|....+... ...++..|..| +. +.+++.+|+ ..|+|
T Consensus 149 ~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~------~~~A~~aL~nL------s~~~~~nk~~i~~~~Gai 216 (354)
T 3nmw_A 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST------LKSVLSALWNL------SAHCTENKADICAVDGAL 216 (354)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHH------HHHHHHHHHHH------HTTCHHHHHHHHHSTTHH
T ss_pred HHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHH------HHHHHHHHHHH------HccChhhhHHHHHhcCcH
Confidence 899999753 5555444 566999998755332211 11222223222 33 456788888 89999
Q ss_pred HHHHHhhhcccH----HHHHHHHHHHHHhhh---ccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhcccc
Q 002234 303 ESVISSLEAEWA----EERIAAVGILLRCMQ---EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRR 375 (949)
Q Consensus 303 ~~l~~~l~~~~~----~~~~~a~~~l~~~~~---~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~ 375 (949)
++|+++|+.++. +.+..|+.+|.++.. .+...|..+.+.+.+++|+++|++++...+..|+.+|.+|...
T Consensus 217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~--- 293 (354)
T 3nmw_A 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--- 293 (354)
T ss_dssp HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC---
Confidence 999999997765 468888898887765 5777899999999999999999999999999999999999643
Q ss_pred chhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhc
Q 002234 376 TFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDL 421 (949)
Q Consensus 376 ~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~ 421 (949)
..+..+.|.+.|.++ .|+.+|+...++.+.-|+..|.+|..
T Consensus 294 --~~~~~~~i~~~G~i~---~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 294 --NPKDQEALWDMGAVS---MLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp --CHHHHHHHHHTTHHH---HHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHCCCHH---HHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 234455677888884 47888777777767777777777633
No 203
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.43 E-value=2.6e-14 Score=113.13 Aligned_cols=54 Identities=19% Similarity=0.417 Sum_probs=49.0
Q ss_pred cccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccH
Q 002234 18 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 73 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~ 73 (949)
.|.||||+++|+|||++ +|||+|||.||++|+... .+||+|+++++..+++ ||.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Li-p~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIV-EIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCE-ECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcE-ECc
Confidence 58999999999999999 999999999999999864 4799999999999996 874
No 204
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.43 E-value=5e-14 Score=125.17 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCCcccCcCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCC
Q 002234 14 TPPKDFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 88 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~-~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 88 (949)
.+.+++.||||+++|.+||+ ++|||+||+.||.+|+......||.||.++....+. +|..+.++++........
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~-~~~~~~~i~~~~~~l~~~ 92 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV-NCRWAEEVTQQLDTLQLC 92 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-ECTTHHHHHHHHHHHCC-
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH-hhHHHHHHHHHHHHHHHH
Confidence 45688999999999999999 999999999999999998656999999999988885 999999999988877643
No 205
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=111.82 Aligned_cols=57 Identities=12% Similarity=0.334 Sum_probs=51.0
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
...+++++.||||++.+.+||+++|||+||+.||.+|+..+...||.||+.+....+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 346788999999999999999999999999999999997666789999999887654
No 206
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-14 Score=123.43 Aligned_cols=69 Identities=19% Similarity=0.445 Sum_probs=59.1
Q ss_pred CCCCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhc-----CCCCCCCCCCCCCCCCCCCccHHHHHH
Q 002234 9 GIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER-----GNSSCPITRQKLSSTKLPKTNYVLKRL 78 (949)
Q Consensus 9 ~~~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~-----~~~~CP~c~~~~~~~~~~~~n~~l~~~ 78 (949)
......+++++.||||++.+.+|++++|||+||+.||.+|+.. +...||.||+.+....+. +|+.|+++
T Consensus 10 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~-~n~~l~~~ 83 (85)
T 2ecv_A 10 SGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR-PNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC-CSCCCCCC
T ss_pred HHHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC-ccHHHHHh
Confidence 3444578899999999999999999999999999999999876 356899999999988884 88776554
No 207
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.43 E-value=5.1e-15 Score=125.91 Aligned_cols=66 Identities=24% Similarity=0.464 Sum_probs=57.3
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcC------CCCCCCCCCCCCCCCCCCccHHHHHH
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG------NSSCPITRQKLSSTKLPKTNYVLKRL 78 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~------~~~CP~c~~~~~~~~~~~~n~~l~~~ 78 (949)
...+++++.||||++.|.+|++++|||+||+.||.+|+... ...||.||+.+....+. +|+.|+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~-~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ-ANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG-TCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC-cCHHHHHh
Confidence 34678899999999999999999999999999999998763 55899999999988874 88776554
No 208
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.43 E-value=4.8e-13 Score=152.12 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=192.4
Q ss_pred HHHHHHHhhcccCccceeeccccCCcHHHHHHHHhh-----------C----hhhHHHHHHhcCCChH-HHHHh---hh-
Q 002234 188 ATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK-----------G----LLEAVVLIDLLRPSTR-TLIEM---DM- 247 (949)
Q Consensus 188 ~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~-----------g----~~~Aa~~l~~L~~~~~-~~~~~---~~- 247 (949)
.|+.+|.++ +.++++++.|. ..|++++|+.+|.. . ..+|+.+|.+|...++ ++..+ +.
T Consensus 167 qAv~aL~nl-s~~~e~R~~i~-~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKL-SFDEEHRHAMN-ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHH-TTSHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHH-HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 899999999 55677888888 68999999999952 1 5689999999976543 54333 44
Q ss_pred hHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHh-hhcccHHHHHHHHHHHHH
Q 002234 248 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISS-LEAEWAEERIAAVGILLR 326 (949)
Q Consensus 248 ~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~-l~~~~~~~~~~a~~~l~~ 326 (949)
+|+||.+|+.++++- +..|...|..|-.+ .+..++..|++.|+|++||++ +++++.+.+..|+.+|.+
T Consensus 245 Ip~LV~LL~s~~~~v-------~~~A~~aL~nLs~~----~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 245 MRALVAQLKSESEDL-------QQVIASVLRNLSWR----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HHHHHHGGGCSCHHH-------HHHHHHHHHHHTSS----CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHH-------HHHHHHHHHHHhcC----CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 799999999764331 12233333333111 134688999999999999997 567888899999999988
Q ss_pred hhhccCCchhhHh-hhcCchhhHHHHHhcCCc----chhHHHHHHHHhhhc-cccchhHHHHHHhhccCCchhHHHHHHH
Q 002234 327 CMQEDGKCRNSIA-DKAELAPVMESFMAASDG----ERFEIVCFLSELVKL-NRRTFNEQILHIIKDEGTYSSMHTLLVY 400 (949)
Q Consensus 327 ~~~~~~~~r~~~~-~~~~~~~l~~ll~~~~~~----~~~~~~~~l~~l~~~-~r~~~~~~~l~~i~~~~~~~~~~~l~~~ 400 (949)
+...+...+..|. ..|.+++|+++|+++.+. .+..|..+|.+|... .. ..+..+.|.+.|.+ ..|+.+
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G~i---~~Lv~L 387 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCL---QTLLQH 387 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHH---HHHHHH
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcccH---HHHHHH
Confidence 8764444566666 799999999999987764 577888888888641 11 22344567778877 569999
Q ss_pred HhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 401 LQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 401 l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
|+.+..+-+.-|++.|.+|..-....+.-+.++++++.|++.|++++. ..++.|+.||.||.-
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~-~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAALRNLMA 450 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSH-HHHHHHHHHHHHHHT
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHc
Confidence 999998888899999999965333445556688899999999998754 568899999999854
No 209
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.42 E-value=3.7e-13 Score=161.64 Aligned_cols=302 Identities=14% Similarity=0.087 Sum_probs=211.4
Q ss_pred hHHHHHHHHHHHHHhc--CChhHHHhhchhhHHhhhhhhhccC-CchhHHHHHHHHHHhhcccCccceeeccccCCcHHH
Q 002234 140 SEMAVLQIERCWLEAS--MELDIQIMLSKPAVINGFVEILFNS-VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVER 216 (949)
Q Consensus 140 ~~~a~~~i~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~l~~s-~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~ 216 (949)
++.|+.-+.+++.... .+..+....+...++..|+.+|... .+.++++.|+..|.+| +.+..+++.++...|.++.
T Consensus 347 r~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL-S~~~~vk~~lv~d~g~Ip~ 425 (810)
T 3now_A 347 RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL-TLDAECKEKLIEDKASIHA 425 (810)
T ss_dssp HHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTSHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCCcHHHHHHHHccchHHH
Confidence 4566666666654322 1111211122234456677777765 3889999999999999 6677788899977899999
Q ss_pred HHHHHhhC----hhhHHHHHHhcCCCh------------------------------------HHHHHhhhhHHHHHHHH
Q 002234 217 IVALFKKG----LLEAVVLIDLLRPST------------------------------------RTLIEMDMMESLMTVIK 256 (949)
Q Consensus 217 l~~llk~g----~~~Aa~~l~~L~~~~------------------------------------~~~~~~~~~~~lv~~l~ 256 (949)
|+.+|+.+ ...|+.+|.+|.... +.+..-|.+|+|+.+|+
T Consensus 426 LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~ 505 (810)
T 3now_A 426 LMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK 505 (810)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc
Confidence 99999987 578899999997532 23445566799999999
Q ss_pred hccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchh
Q 002234 257 KKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRN 336 (949)
Q Consensus 257 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~ 336 (949)
+++..- +..|.-.|..| +.+.+++..+++.|++|+|+.++++|+.+.|..|+.+|.+++........
T Consensus 506 s~s~~v-------qe~Aa~aL~NL------A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 506 TESHNS-------QELIARVLNAV------CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp CCCHHH-------HHHHHHHHHHH------HTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHH-------HHHHHHHHHHH------cCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 875321 12223333333 45567999999999999999999999999999999999987654332111
Q ss_pred h--HhhhcCchhhHHHHHhcCC-cchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHH
Q 002234 337 S--IADKAELAPVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVA 413 (949)
Q Consensus 337 ~--~~~~~~~~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a 413 (949)
+ ....+.++||++||.+... ..++.|+.+|.+|...+ .+..+.|.++|++ ..|+.+|....+.-+--|+
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~-----d~~~~~Ii~aG~l---~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN-----ESVRQRIIKEQGV---SKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHH---HHHHHHHHSCCTTHHHHHH
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCH---HHHHHHHcCCCHHHHHHHH
Confidence 1 0123589999999986533 44677888999998763 3444557778877 5588888888777777889
Q ss_pred HHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 414 GLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 414 ~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
.++.++..-.+.++.-+-..+++..|+..|.+.+ ..+|..|+.||.||+.
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhC
Confidence 9988884422211111101257899999998865 4679999999999865
No 210
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.41 E-value=4.2e-14 Score=129.60 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=61.7
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-------CCCCCccHHHHHHHHHHH
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-------TKLPKTNYVLKRLIASWQ 83 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~-------~~~~~~n~~l~~~i~~~~ 83 (949)
...+++.||||+++|.+||+++|||+||+.||.+|+..+...||.||+.+.. ..+. +|..|.++|++|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~-~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL-VNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCC-BCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccch-hhHHHHHHHHHHC
Confidence 4567999999999999999999999999999999998767789999999863 5564 8999999999985
No 211
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=117.72 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHH
Q 002234 13 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 79 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i 79 (949)
.+..+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.||+.+. ..+ .+|..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~-~~~~~l~~~~ 73 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIF-NPAKELMAKL 73 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCC-EECHHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccC-CcHHHHHHHH
Confidence 456788999999999999999999999999999999986 458999999997 455 4886654443
No 212
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.40 E-value=4.7e-10 Score=132.17 Aligned_cols=297 Identities=11% Similarity=0.109 Sum_probs=195.6
Q ss_pred cccEEEEecCCCCeEEEecCCc--eeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecC--CCceeeeEEecccCCC
Q 002234 639 EMVKVLSNGHDSSADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR--GSILHLIQQIREHTKA 712 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~--t~~~~~i~~l~~H~~~ 712 (949)
.+..+++...+++|.+||..+. +..+ .....+..+.|+|| ++++++.||.|.+||+. ++ +.+.++.... .
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i-~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G~-~ 241 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVL-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGS-E 241 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCS-E
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEE-eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecCC-C
Confidence 3457788888999999999752 3222 23346779999997 88888999999999996 66 6677776433 4
Q ss_pred EEEEEEe----cCCCEEEEEeC-CCcEEEEECCCCeeEE-EEeecC---------CCceeeeeeccceEEEEeCCCEEEE
Q 002234 713 VTGLAIL----QSGEMLYSGSL-DKTARVWSIGNEEIHC-VQVHDI---------KDQIQNLAVSNSILCFIPQGAGIKV 777 (949)
Q Consensus 713 V~~v~fs----pdg~~L~Sgs~-Dg~I~vWd~~~~~~~~-~~~~~~---------~~~v~~l~~~~~~~~fsp~g~~l~~ 777 (949)
...++|+ |||+++++++. +++|.++|..+.+... +..... ...+..+. +++++..+++
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~-------~s~~~~~~vv 314 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL-------ASHYRPEFIV 314 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE-------ECSSSSEEEE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE-------EcCCCCEEEE
Confidence 5789999 69998887765 5999999998876322 221110 11233333 6666665554
Q ss_pred EEec-CeEEEecCC-------------CCceEEEEeC--CEEEEEE-CCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 778 HLRN-GKTKLLNSS-------------KYPKCLALVQ--GKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 778 ~~~~-g~i~~~~~~-------------~~v~~v~~~~--~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
...+ |.+.+++.. .....+.|++ .+++++. .++.|.++|..+++........ ....|.+.--
T Consensus 315 ~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~ 393 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGA 393 (567)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSSBCCTTCE
T ss_pred EecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc-CcCCCCccce
Confidence 4433 666666533 3455667775 3455544 6789999999999876543310 1123432222
Q ss_pred EEEEeCC-ceEEEEEECCCCEEEEEECCC-------CeeEEeecCC-CcEEEEEEcCC--EEEEEEC-------CCeEEE
Q 002234 841 ALQVHNG-LVYTASTSLDGAAVKMWSTSN-------YNMVGSLPTL-SEVRAMVVSSE--LVYLGCK-------GGTVEI 902 (949)
Q Consensus 841 ~l~~~~~-~~~l~s~s~Dg~~I~iwd~~~-------~~~~~~~~~~-~~v~~l~~s~d--~l~sgs~-------dg~I~v 902 (949)
.+ ++|+ +.+.++....+++|.++|..+ .+.++++... ..-..+.++|| ++++... .++|.|
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v 472 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV 472 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence 22 5786 555455443324999999987 6778887743 33345678888 6777653 469999
Q ss_pred EECCCC-----c-EEEEecc-------ccccceeEEEEeCCCCEEEEEe-----CCCcEEEEeC
Q 002234 903 WDQKRQ-----I-RIETLQT-------GTSGKVQCMALDDNEEFLVIGT-----SDGRIQAWGL 948 (949)
Q Consensus 903 wd~~~~-----~-~~~~l~~-------~h~~~I~~l~~spdg~~L~sgs-----~Dg~I~iWdl 948 (949)
+|+.+. . ....+.. .....+..+.|+|||+.+..+. .++.|.|+|.
T Consensus 473 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 473 FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred EECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 999876 2 1233321 1134789999999999887763 3789999885
No 213
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.40 E-value=1.2e-13 Score=124.96 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=61.2
Q ss_pred CCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCC----CCCCccHHHHHHHHHHH
Q 002234 14 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSST----KLPKTNYVLKRLIASWQ 83 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~----~~~~~n~~l~~~i~~~~ 83 (949)
.+++++.||||+++|.+||++ +|||+||+.||.+|+..+ ..||.||+.+... .+ .+|..++++++++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l-~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNI-RSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGE-EECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCccccc-CcCHHHHHHHHHHh
Confidence 467899999999999999998 999999999999999875 5899999999875 56 49999999999875
No 214
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=111.13 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=52.9
Q ss_pred CCCCCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 72 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 72 (949)
...++.+++.||||++.|.+||++ +|||+||+.||.+|+.. ...||.||+.+...+++ +|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL-SG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC-CC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc-cc
Confidence 345678999999999999999997 99999999999999987 45999999999987774 54
No 215
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.39 E-value=1.4e-09 Score=117.02 Aligned_cols=262 Identities=12% Similarity=0.089 Sum_probs=170.5
Q ss_pred ccccccEEEEecCCCCeEEEecCCceeeec--CCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRELVHVDS--SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~--~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
+..++...++...++.|.+||......... .+...+.+++++++ +.++...++.|..||.... .....+..+..
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~ 99 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDS 99 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEeCCCcCC
Confidence 344677666666678899999874333222 34578999999986 5555555789999998732 12222333556
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~ 791 (949)
.+..+++.++|+++++...++.|..||. +++............+..+. +.++|+
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~-------~~~~g~------------------ 153 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT-------LGSDNA------------------ 153 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-------ECTTSC------------------
T ss_pred CceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE-------EcCCCC------------------
Confidence 7899999999998888878889999998 55433222211122233332 444443
Q ss_pred CceEEEEeCCEEEEEE-CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe
Q 002234 792 YPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 792 ~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
++.+. .++.|..||. +++.... ....+...+..+++++++.+.++...++ .|..||. ++.
T Consensus 154 -----------l~v~~~~~~~i~~~~~-~g~~~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~ 214 (299)
T 2z2n_A 154 -----------LWFTENQNNAIGRITE-SGDITEF-----KIPTPASGPVGITKGNDDALWFVEIIGN-KIGRITT-SGE 214 (299)
T ss_dssp -----------EEEEETTTTEEEEECT-TCCEEEE-----ECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCC
T ss_pred -----------EEEEeCCCCEEEEEcC-CCcEEEe-----eCCCCCCcceeEEECCCCCEEEEccCCc-eEEEECC-CCc
Confidence 44443 4678999998 6655422 1223345688999999888766654454 8999999 665
Q ss_pred eEEe-ec-CCCcEEEEEEcCC-EEEEEE-CCCeEEEEECCCCcEEEEe-ccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 871 MVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIWDQKRQIRIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 871 ~~~~-~~-~~~~v~~l~~s~d-~l~sgs-~dg~I~vwd~~~~~~~~~l-~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
.... .. +...+.+++++++ .++++. .++.|.+||. +++. ..+ ...+...+.++++ ++|++.++.+ .+.|..
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~ 290 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGK 290 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEE
Confidence 4332 22 3467899999987 566665 6789999998 4543 333 2244567899999 8888777655 455655
Q ss_pred EeC
Q 002234 946 WGL 948 (949)
Q Consensus 946 Wdl 948 (949)
++.
T Consensus 291 ~~~ 293 (299)
T 2z2n_A 291 LTL 293 (299)
T ss_dssp EEE
T ss_pred EEc
Confidence 553
No 216
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=151.86 Aligned_cols=249 Identities=14% Similarity=0.073 Sum_probs=186.6
Q ss_pred hhHHHhhchhhHHhhhhhhhcc----------CCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC---
Q 002234 158 LDIQIMLSKPAVINGFVEILFN----------SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG--- 224 (949)
Q Consensus 158 ~~~~~~l~~~~~~~~l~~~l~~----------s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g--- 224 (949)
......+...+++..++.+|.. +.+..+++.|..+|.+|...++.++..+....|+|+.|+.+|+.+
T Consensus 179 ~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~ 258 (458)
T 3nmz_A 179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHH
Confidence 3344447778888889998852 234678999999999997666656666655677899999999987
Q ss_pred -hhhHHHHHHhcCCC--hHHHHHh---hhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccc-cccchhhhc
Q 002234 225 -LLEAVVLIDLLRPS--TRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI-VSSIANTIV 297 (949)
Q Consensus 225 -~~~Aa~~l~~L~~~--~~~~~~~---~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~i~ 297 (949)
...|+.+|.+|+.. ++++..+ +.+|+||++|....+... ...++..|..| +. +.+++.+|+
T Consensus 259 v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v------~~~A~~aL~nL------s~~~~~nk~~I~ 326 (458)
T 3nmz_A 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST------LKSVLSALWNL------SAHCTENKADIC 326 (458)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH------HHHHHHHHHHH------HHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH------HHHHHHHHHHH------ccCCHHHHHHHH
Confidence 66788899999863 4555444 556999998765432211 11222223222 44 457788888
Q ss_pred -chhhHHHHHHhhhcccH----HHHHHHHHHHHHhhh---ccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHh
Q 002234 298 -SSKVFESVISSLEAEWA----EERIAAVGILLRCMQ---EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 369 (949)
Q Consensus 298 -~~g~i~~l~~~l~~~~~----~~~~~a~~~l~~~~~---~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l 369 (949)
..|+|++|+++|+.+.. +.+..|+.+|.++.. .+...+..+.+.+.+++|+++|++++...+..|+.+|.+|
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 89999999999997764 368888888887765 5677889999999999999999999999999999999999
Q ss_pred hhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC
Q 002234 370 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK 427 (949)
Q Consensus 370 ~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~ 427 (949)
... ..+..+.|.+.|+++ .|+.+|+...++.+-.|+..|.+|.. ..|.|
T Consensus 407 a~~-----~~~~~~~i~~~G~I~---~Lv~LL~s~~~~v~~~Aa~AL~nL~~-~~p~k 455 (458)
T 3nmz_A 407 SAR-----NPKDQEALWDMGAVS---MLKNLIHSKHKMIAMGSAAALRNLMA-NRPAK 455 (458)
T ss_dssp HSS-----CHHHHHHHHHHTHHH---HHHTTTTCSSHHHHHHHHHHHHHHHT-CCSCC
T ss_pred HcC-----CHHHHHHHHHCCCHH---HHHHHHhCCCHHHHHHHHHHHHHHHc-CCHhh
Confidence 753 234456678888884 58888988888888889999988844 45666
No 217
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=8.6e-14 Score=127.73 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=63.4
Q ss_pred CCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCC
Q 002234 14 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 87 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 87 (949)
.+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.||..+....+ .+|+.|+++++.+.....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~-~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDL-KINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSC-CCCHHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccc-cccHHHHHHHHHHHHHHH
Confidence 456789999999999999999 9999999999999986 589999999988888 499999999999987654
No 218
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=1.1e-11 Score=139.65 Aligned_cols=247 Identities=7% Similarity=-0.057 Sum_probs=153.7
Q ss_pred eEEEEEeCC--EEEEEeC-C--CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 671 VLSIACFRD--KIFSGHS-D--GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 671 V~~l~~s~d--~lasgs~-D--g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
+..++|+|| +|+.... + ..|.+||+.++ +......++......+.|+|||++|+.++.++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 678899997 6655543 3 36888899988 333333333332334789999999999999999999999988644
Q ss_pred EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CEEEEE-----ECCCcEEEEECC
Q 002234 746 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCG-----CQDGAIQEIDLA 818 (949)
Q Consensus 746 ~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~l~sg-----s~Dg~I~iwd~~ 818 (949)
.+..... . ++++|+.++....++...++.. ...+++ ..++.+ ..+..|.+||+.
T Consensus 116 ~~~~~~~-~-------------~~~~g~~l~~~~~~~~~~~~~~-----~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~ 176 (396)
T 3c5m_A 116 VIYTVDE-E-------------WKGYGTWVANSDCTKLVGIEIL-----KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE 176 (396)
T ss_dssp EEEECCT-T-------------EEEEEEEEECTTSSEEEEEEEE-----GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT
T ss_pred EEEeccc-c-------------cCCCCCEEEeccCCcccccccc-----ccccCCCCcceeeeeeccCCCcceEEEEECC
Confidence 3332211 1 4445444433222222222110 001111 112221 356689999999
Q ss_pred CCceeeeecccccccCCCCCEEEEEEeC-CceEEEEEECCC-----CEEEEEECCCCeeEEeecC--CCcEEEEEEcCC-
Q 002234 819 TGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG-----AAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE- 889 (949)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~Dg-----~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~d- 889 (949)
+++..... .+...+..+.|+| ++..++..+.++ ..|.+||+.++.......+ ...+..+.|+||
T Consensus 177 ~g~~~~~~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 177 TGELEVIH-------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp TCCEEEEE-------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred CCcEEeec-------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence 88765332 3456789999999 777666655432 3688899876654433332 235788999998
Q ss_pred -EEEEEECC-----CeEEEEECCCCcEEEEeccccccceeEEEEeC-CCCEEEEEe----------------CCCcEEEE
Q 002234 890 -LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGT----------------SDGRIQAW 946 (949)
Q Consensus 890 -~l~sgs~d-----g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~sp-dg~~L~sgs----------------~Dg~I~iW 946 (949)
.++.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++ .++.|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMV--MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEEEEE--CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEEeee--CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 46655433 459999999887544331 11 123 88999 999888765 34789999
Q ss_pred eCC
Q 002234 947 GLS 949 (949)
Q Consensus 947 dl~ 949 (949)
|+.
T Consensus 326 d~~ 328 (396)
T 3c5m_A 326 NTK 328 (396)
T ss_dssp ETT
T ss_pred ecc
Confidence 863
No 219
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.37 E-value=1.9e-13 Score=133.94 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=61.8
Q ss_pred CCCCcccCcCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Q 002234 14 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 85 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 85 (949)
.+.+++.||||++.|.+||++ +|||+||+.||.+|+..+...||.||..+.....++||..|+++|.++...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 456788999999999999998 999999999999999986778999999986543336999999999999654
No 220
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.36 E-value=4.1e-12 Score=152.64 Aligned_cols=303 Identities=13% Similarity=0.104 Sum_probs=211.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCc-c-------------
Q 002234 137 LNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK-S------------- 202 (949)
Q Consensus 137 l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~-~------------- 202 (949)
.+..+.++--+.-++...+.... ....++++..|+++|.. .+..++..+..+|.|+....+ .
T Consensus 393 ~~v~~~AveaLayLS~~~~vk~~---lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s 468 (810)
T 3now_A 393 KDIRRWAADGLAYLTLDAECKEK---LIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFA 468 (810)
T ss_dssp SSHHHHHHHHHHHHTTSHHHHHH---HHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHH---HHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHh
Confidence 34456665555555433222111 13356778888888864 688899999999999976321 1
Q ss_pred ---------------c---eeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHH---hhhhHHHHHHHHh
Q 002234 203 ---------------V---IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIE---MDMMESLMTVIKK 257 (949)
Q Consensus 203 ---------------~---~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~---~~~~~~lv~~l~~ 257 (949)
+ ++.+. ..|+++.|+.+|+++ ..+|+.+|++|+...+++.. .|.+|+|+.+|++
T Consensus 469 ~~~v~~~~~ld~~~~v~~r~~~Vv-eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s 547 (810)
T 3now_A 469 KQHIPEEHELDDVDFINKRITVLA-NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE 547 (810)
T ss_dssp CCSCCCSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS
T ss_pred hccCccccccccHHHHHHHHHHHH-HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 1 14445 458999999999988 67899999999876665544 4455999999998
Q ss_pred ccccchhcccCchhhHHHHHHHHhcCCcccccccchhh-hcchhhHHHHHHhhhcc-cHHHHHHHHHHHHHhhhccCCch
Q 002234 258 KEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANT-IVSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGKCR 335 (949)
Q Consensus 258 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-i~~~g~i~~l~~~l~~~-~~~~~~~a~~~l~~~~~~~~~~r 335 (949)
++... . ..|+-++ ..|..+. ++..... ....|++|+|+++|..+ +...+..|..+|.++...+...+
T Consensus 548 ~~~~~-----k-~~Aa~AL-~nL~~~~----~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~ 616 (810)
T 3now_A 548 GTEKG-----K-RHATQAL-ARIGITI----NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616 (810)
T ss_dssp SCHHH-----H-HHHHHHH-HHHHHHS----CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCHHH-----H-HHHHHHH-HHHhcCC----ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence 86331 1 2222222 2221111 1111110 01247999999999976 55667788999999988777788
Q ss_pred hhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHH
Q 002234 336 NSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGL 415 (949)
Q Consensus 336 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~ 415 (949)
..+.+++.+++|+.|+.+.+...+..|+++|.+|...+ +.+..+.+ | -..++.|+.+|+....+-+--|+++
T Consensus 617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~------~~~~~~v~-~-~g~l~~Lv~LL~s~d~~vq~~Aa~A 688 (810)
T 3now_A 617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE------DVIKMFEG-N-NDRVKFLALLCEDEDEETATACAGA 688 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH------HHHHHHHS-S-SSHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh------HHHHHHHh-c-cCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999997753 22333332 1 2356889999999888888889999
Q ss_pred HHhhhcccCCCCCCccH-HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 416 LLQLDLLAEPRKMSIYR-EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 416 l~~l~~l~~~~~~~~~r-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
|..+..-.+.....+.+ +++++.|+..|++++. ..|..|+.+|.||..
T Consensus 689 LanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~-~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 689 LAIITSVSVKCCEKILAIASWLDILHTLIANPSP-AVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH-HHHHHHHHHHHHHHh
Confidence 99985521222223344 7899999999998765 668899999999854
No 221
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.3e-13 Score=110.19 Aligned_cols=58 Identities=22% Similarity=0.520 Sum_probs=50.5
Q ss_pred CCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPITRQKLSSTKL 68 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~--~~~~CP~c~~~~~~~~~ 68 (949)
....+++++.||||++.|.+||+++|||+||+.||.+|+.. +...||.||+.+...++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34567899999999999999999999999999999999973 45689999999886654
No 222
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.35 E-value=1.2e-10 Score=123.74 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=153.0
Q ss_pred ceEEEEEeCC--EEE-EEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 670 KVLSIACFRD--KIF-SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 670 ~V~~l~~s~d--~la-sgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
...+++++++ +++ +.+.++.|.+||..++. .......+...+.+++++++|+++++.. ++.|.+||..++....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc--cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 6789999986 444 43678999999987662 2222223445788999999999766666 8899999987754221
Q ss_pred EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeee
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 826 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 826 (949)
... .....+..+. +.++|+. +++...++.|.+||..+......
T Consensus 102 ~~~-~~~~~p~~i~-------~~~~g~l----------------------------~v~~~~~~~i~~~~~~~~~~~~~- 144 (270)
T 1rwi_B 102 LPF-DGLNYPEGLA-------VDTQGAV----------------------------YVADRGNNRVVKLAAGSKTQTVL- 144 (270)
T ss_dssp CCC-CSCSSEEEEE-------ECTTCCE----------------------------EEEEGGGTEEEEECTTCCSCEEC-
T ss_pred eec-CCcCCCcceE-------ECCCCCE----------------------------EEEECCCCEEEEEECCCceeEee-
Confidence 111 1112233333 5555542 33334567888887655443211
Q ss_pred cccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC-EEEEEE-CCCeEEEE
Q 002234 827 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIW 903 (949)
Q Consensus 827 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d-~l~sgs-~dg~I~vw 903 (949)
.......+..+++++++.+.++...++ .|.+||........... +...+.+++++++ .++++. .++.|.+|
T Consensus 145 -----~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 145 -----PFTGLNDPDGVAVDNSGNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -----CCCSCCSCCCEEECTTCCEEEEEGGGT-EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -----ccccCCCceeEEEeCCCCEEEEECCCC-EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 112234577899999888766665554 99999988766544333 3367899999988 555555 57899999
Q ss_pred ECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 904 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 904 d~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|..+..... ....+...+.+++++|+|+++++...+++|++|++.
T Consensus 219 ~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 219 LAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp CTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 987655433 322344578999999999988888899999999863
No 223
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.34 E-value=9.1e-14 Score=131.24 Aligned_cols=70 Identities=11% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC---------CCCCCccHHHHHHHHHHHH
Q 002234 14 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS---------TKLPKTNYVLKRLIASWQE 84 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~---------~~~~~~n~~l~~~i~~~~~ 84 (949)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.||+++.. ..++ ||..+++.|.+...
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~-~d~~~~~~i~~L~v 105 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAF-PDNAARREVESLPA 105 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCE-ECHHHHHHHHTSEE
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhc-ccHHHHHHHccccc
Confidence 5678999999999999999999999999999999998766689999987532 2453 88888888875543
No 224
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=2.9e-10 Score=125.11 Aligned_cols=241 Identities=10% Similarity=0.008 Sum_probs=159.0
Q ss_pred ccccccccEEEEecCC------------------------CCeEEEecCC--ceeee-cCCCCceEEEEEeCC--EEEEE
Q 002234 634 SPLAFEMVKVLSNGHD------------------------SSADFWNHRE--LVHVD-SSENGKVLSIACFRD--KIFSG 684 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~d------------------------g~I~vWd~~~--~~~~~-~~h~~~V~~l~~s~d--~lasg 684 (949)
..+.++|..+++...+ ++|.+||..+ ..... .++-..+..++++++ ++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 4455677777777776 4799999863 22222 245568899999986 77788
Q ss_pred eCCCcEEEEecCCCceeeeEEe---------cccCCCEEEEEEec-CCCEEEEEe-CCCcEEEEECCCCeeEEEEeecCC
Q 002234 685 HSDGTIKVWTGRGSILHLIQQI---------REHTKAVTGLAILQ-SGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIK 753 (949)
Q Consensus 685 s~Dg~I~vWd~~t~~~~~i~~l---------~~H~~~V~~v~fsp-dg~~L~Sgs-~Dg~I~vWd~~~~~~~~~~~~~~~ 753 (949)
..++.|++||..+.. ..+..+ .++......++|+| +|+++++.+ .++.|++||........+......
T Consensus 109 ~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence 889999999986541 245555 34556789999999 888888887 699999999544322211111100
Q ss_pred Cc-eeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccc
Q 002234 754 DQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 832 (949)
Q Consensus 754 ~~-v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 832 (949)
.. ...-...+..++++|++.. .+++...++.|++||..+++.+..+. .
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g~---------------------------l~v~d~~~~~I~~~~~~~G~~~~~~~----~ 236 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLDQ---------------------------LCVADRENGRIQCFKTDTKEFVREIK----H 236 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTTE---------------------------EEEEETTTTEEEEEETTTCCEEEEEC----C
T ss_pred CCCCCcccCCCcEEEEECCCCE---------------------------EEEEECCCCEEEEEECCCCcEEEEEe----c
Confidence 00 0000001222335554222 14455567899999999888775432 2
Q ss_pred cCCCCCEEEEEEeCCceEEEEEEC------CCCEEEEEECCCCeeEEeec----CCCcEEEEEEcCC--EEEEEECCCeE
Q 002234 833 LGKANPVHALQVHNGLVYTASTSL------DGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSE--LVYLGCKGGTV 900 (949)
Q Consensus 833 ~~h~~~V~~l~~~~~~~~l~s~s~------Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~d--~l~sgs~dg~I 900 (949)
..+...+..++++| +..+...+. .+..|++||..+++.+..+. +...+..++++|+ .+++...++.|
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 34567889999999 444444321 12389999999999998874 4567899999999 45566678899
Q ss_pred EEEECCC
Q 002234 901 EIWDQKR 907 (949)
Q Consensus 901 ~vwd~~~ 907 (949)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 225
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.34 E-value=4.9e-12 Score=147.01 Aligned_cols=334 Identities=13% Similarity=0.099 Sum_probs=226.8
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHH-hcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCcc
Q 002234 124 LKHAITSLCMSEILNESEMAVLQIERCWLE-ASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKS 202 (949)
Q Consensus 124 l~~~i~~l~~s~~l~~~~~a~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~ 202 (949)
+...|.-|.+ ...+-++.|+..++.++.. ..+++.. +...+++..|+.+|..+.+..+++.+..+|.+|+. ++.
T Consensus 92 Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~---I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~ 166 (584)
T 3l6x_A 92 IPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIA---IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDS 166 (584)
T ss_dssp HHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHH---HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGG
T ss_pred cHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHH---HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cch
Confidence 3344455543 3445578888888888753 2334433 67778888899999887788899999999999965 667
Q ss_pred ceeeccccCCcHHHHHHHHh---hC-------------------hhhHHHHHHhcCCChHH-HHHh---h-hhHHHHHHH
Q 002234 203 VIHTLTRVESDVERIVALFK---KG-------------------LLEAVVLIDLLRPSTRT-LIEM---D-MMESLMTVI 255 (949)
Q Consensus 203 ~~~~i~~~~~~i~~l~~llk---~g-------------------~~~Aa~~l~~L~~~~~~-~~~~---~-~~~~lv~~l 255 (949)
++..|++ ++++.|+.+|. +| ...|+.+|.+|+...++ ...| + .+++||++|
T Consensus 167 ~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L 244 (584)
T 3l6x_A 167 IKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIV 244 (584)
T ss_dssp GHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHH
T ss_pred hhHHHHh--ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHH
Confidence 8888883 57999999872 12 34689999999876543 3333 2 348999999
Q ss_pred Hhc-----cccchhcccCchhhHHHHHHHHhcCC--------------------cccccccchhhhcchhhHHHHHHhhh
Q 002234 256 KKK-----EEDFLKMCLKPKSVSVLLLGQMIGDS--------------------EESIVSSIANTIVSSKVFESVISSLE 310 (949)
Q Consensus 256 ~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~~g~i~~l~~~l~ 310 (949)
+.. .+++ ...-++..|..|-... ....+......+...+++++|+.+++
T Consensus 245 ~~~~~~~~~~~~------~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~ 318 (584)
T 3l6x_A 245 QAEIGQKDSDSK------LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318 (584)
T ss_dssp HHHHHTTCCSCH------HHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHhhcccCccHH------HHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence 864 1111 1111233333322110 01223455566778889999999997
Q ss_pred -cccHHHHHHHHHHHHHhhhccCC----chhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHh
Q 002234 311 -AEWAEERIAAVGILLRCMQEDGK----CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHII 385 (949)
Q Consensus 311 -~~~~~~~~~a~~~l~~~~~~~~~----~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i 385 (949)
.++.+.++.|+.+|.+++..+.. .+..+.+++.+++|+.||++++...+..|+.+|.+|..-++.. + .|
T Consensus 319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~---~---~I 392 (584)
T 3l6x_A 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK---E---LI 392 (584)
T ss_dssp HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH---H---HH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH---H---HH
Confidence 56788899999999999876533 3456677889999999999999999999999999998765422 2 24
Q ss_pred hccCCchhHHHHHHHHhhcCCc-----cchhHHHHHHhhhcc---cCCCCCCccHHHHHHHHHHHhhcCC-ChHHHHHHH
Q 002234 386 KDEGTYSSMHTLLVYLQTANHD-----QCPVVAGLLLQLDLL---AEPRKMSIYREEAIDTLISCLRNSD-YPAAQLAAA 456 (949)
Q Consensus 386 ~~~~~~~~~~~l~~~l~~~~~~-----~~~~~a~~l~~l~~l---~~~~~~~~~r~~~~~~l~~~l~~~~-~~~~~~~~~ 456 (949)
. .| .++.|+.+|..+..+ ...+++.++.-|..| ....+..+.++++++.|+..|++++ .+..+..|+
T Consensus 393 ~-~g---~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 393 G-KH---AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp H-HH---HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred H-hC---CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 2 33 457799998776432 223344444333222 2234556778899999999999874 557888999
Q ss_pred HHHHhcCcccccCChhhHHHHHHHHhCCCcc
Q 002234 457 KTIVSLQGRFTTSGKSLTRAMLLKRAGVGKS 487 (949)
Q Consensus 457 ~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 487 (949)
.+|.+|..+=.. .-.+|+.||.+.
T Consensus 469 ~vL~nl~~~~el-------r~~~kk~G~~~~ 492 (584)
T 3l6x_A 469 LVLQTIWGYKEL-------RKPLEKEGWKKS 492 (584)
T ss_dssp HHHHHHHTSHHH-------HHHHHTTTCCGG
T ss_pred HHHHHHHcCHHH-------HHHHHHcCCCHH
Confidence 999998763111 344677888774
No 226
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=4.2e-13 Score=126.98 Aligned_cols=64 Identities=28% Similarity=0.559 Sum_probs=54.1
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 83 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~ 83 (949)
.+++.||||++.|.|||+++|||+||+.||.+|+... ..||.||+++.... +|..+...|+++.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~---~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSKT---YSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCEE---ECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCCC---CccchhHHHHHHH
Confidence 4578999999999999999999999999999999874 58999999986432 5677777777665
No 227
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.33 E-value=7.9e-11 Score=129.58 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=160.4
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
..|.++.|+++ .+++.+.++.++.| .+ .....+..+...+.+++|+|+|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TA--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---EC--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---cc--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 45677788875 55666788899999 33 4566777788888999999999988888899999999999876433
Q ss_pred EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC----CcEEEEECCCCce
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD----GAIQEIDLATGTF 822 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D----g~I~iwd~~~~~~ 822 (949)
... .....+.++. ++|+|+. +++...+ +.|.+||..++..
T Consensus 81 ~~~-~~~~~~~~i~-------~~~dg~l----------------------------~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 81 PFV-SHKANPAAIK-------IHKDGRL----------------------------FVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp EEE-CSSSSEEEEE-------ECTTSCE----------------------------EEEECTTSSSCCEEEEECTTSCSC
T ss_pred Eee-CCCCCcceEE-------ECCCCcE----------------------------EEEeCCCCCCCceEEEEeCCCCEE
Confidence 321 2334455554 6666653 2333333 5899999988775
Q ss_pred eeeecccccccCCCCCEEEEEEeCCceEEEEEECC-----CCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEE-
Q 002234 823 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD-----GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG- 894 (949)
Q Consensus 823 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----g~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sg- 894 (949)
...... ..+...+..+.+++++.+.++...+ ...|..||..+++..........+..++|+|| .++.+
T Consensus 125 ~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 125 QDIIED----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp EEEECS----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred EEEEcc----CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe
Confidence 422211 1234679999999999887776431 12566677665554433333456789999998 46554
Q ss_pred ECCCeEEEEECCC-CcEEEEe-------ccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 895 CKGGTVEIWDQKR-QIRIETL-------QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 895 s~dg~I~vwd~~~-~~~~~~l-------~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+.++.|++||..+ +..+..+ ..++ ..+..++++++|+++++...++.|.+||.
T Consensus 201 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 201 TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 4578999999964 3322211 0122 36788999999998888878899999985
No 228
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.33 E-value=7e-12 Score=144.56 Aligned_cols=271 Identities=14% Similarity=0.142 Sum_probs=186.7
Q ss_pred hhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCC-hHHHHHh
Q 002234 171 NGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTLIEM 245 (949)
Q Consensus 171 ~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~-~~~~~~~ 245 (949)
..++.+|.. .++.+++.|+.+|.+|...++.++..+. ..|+++.|+.+|+.+ ..+|+.+|.+|... ++++..+
T Consensus 5 ~~lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHH-HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 446666655 5788999999999999766665666676 789999999999987 56888899999764 7776655
Q ss_pred ---hhhHHHHHHHH-hccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhh--------hccc
Q 002234 246 ---DMMESLMTVIK-KKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSL--------EAEW 313 (949)
Q Consensus 246 ---~~~~~lv~~l~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l--------~~~~ 313 (949)
|.+|+|+++|+ .++.. . +.-+...|..| +...+++..+++ |++|+|++++ +++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~-~------~~~a~~aL~nL------a~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAE-I------QKQLTGLLWNL------SSTDELKEELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHH-H------HHHHHHHHHHH------HTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred HHcCCHHHHHHHHhhCCCHH-H------HHHHHHHHHHH------hcCHHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence 45699999998 54321 1 11123333333 344678888998 9999999999 3343
Q ss_pred HHHHH--------HHHHHHHHhhhccCCchhhHhhh-cCchhhHHHHHhc------CCcchhHHHHHHHHhhhc------
Q 002234 314 AEERI--------AAVGILLRCMQEDGKCRNSIADK-AELAPVMESFMAA------SDGERFEIVCFLSELVKL------ 372 (949)
Q Consensus 314 ~~~~~--------~a~~~l~~~~~~~~~~r~~~~~~-~~~~~l~~ll~~~------~~~~~~~~~~~l~~l~~~------ 372 (949)
.+.|+ .|+.+|.++... ..+|..+.+. |.+++|+.+++++ ..+.+.+|+..|.+|...
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~ 227 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSC
T ss_pred chhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCc
Confidence 33343 899999988776 6789999997 9999999999862 455566666555555310
Q ss_pred -------------------------------------------------------------------cc-----------
Q 002234 373 -------------------------------------------------------------------NR----------- 374 (949)
Q Consensus 373 -------------------------------------------------------------------~r----------- 374 (949)
..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~a 307 (457)
T 1xm9_A 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA 307 (457)
T ss_dssp CHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred chhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHH
Confidence 00
Q ss_pred --------cchhHHH-HHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 002234 375 --------RTFNEQI-LHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 445 (949)
Q Consensus 375 --------~~~~~~~-l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~ 445 (949)
.....++ ...|.++|++ ..|+.+|+.+..+-+--|+++|-+|.. .+..+ ...+++++.+|++.|.+
T Consensus 308 L~nl~~~~~~~~~~~~~~~v~~~~~l---~~Lv~LL~~~~~~v~~~A~~aL~nls~-~~~~~-~~i~~~~i~~Lv~lL~~ 382 (457)
T 1xm9_A 308 LQNLTASKGLMSSGMSQLIGLKEKGL---PQIARLLQSGNSDVVRSGASLLSNMSR-HPLLH-RVMGNQVFPEVTRLLTS 382 (457)
T ss_dssp HHHHTTCSSSHHHHHHHHHHTTSCCH---HHHHHHTTCSCHHHHHHHHHHHHHHHT-SGGGH-HHHHHHTHHHHHHTTTS
T ss_pred HHHhccCcCcchHHHHHHHHHHcCCc---hHHHHHHhCCCHhHHHHHHHHHHHHhc-CHHHH-HHHHHhhhHHHHHhccC
Confidence 0000111 1224456666 569999999988888889999999955 33333 33467899999999999
Q ss_pred CCCh-----HHHHHHHHHHHhcC
Q 002234 446 SDYP-----AAQLAAAKTIVSLQ 463 (949)
Q Consensus 446 ~~~~-----~~~~~~~~~l~~l~ 463 (949)
++.. +++..++.+|.|+.
T Consensus 383 ~~~~~~~~~~v~~~~l~~l~ni~ 405 (457)
T 1xm9_A 383 HTGNTSNSEDILSSACYTVRNLM 405 (457)
T ss_dssp CCSCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHH
Confidence 8752 45667778888763
No 229
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.33 E-value=3.2e-13 Score=123.95 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=62.3
Q ss_pred CCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Q 002234 13 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 85 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~ 85 (949)
.++++++.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+....+..++..+.+++.++...
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~ 90 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVK 90 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEE
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCC
Confidence 3466789999999999999999999999999999999876668999999999877755778888887665443
No 230
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=104.76 Aligned_cols=49 Identities=27% Similarity=0.565 Sum_probs=43.6
Q ss_pred CCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCC
Q 002234 11 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPIT 59 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~--~~~~CP~c 59 (949)
....+++++.||||++.|.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999999999999999999999999999999984 45589998
No 231
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=4.9e-13 Score=122.03 Aligned_cols=69 Identities=16% Similarity=0.423 Sum_probs=59.3
Q ss_pred CCCcccCcCccccccCceecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 84 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~ 84 (949)
+.+++.||||++.+.+||+++|||+||+.||.+|+... ...||.||+.+....+. +|..+.++++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ-ESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB-CCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC-ccHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999863 25899999999988884 88777777777654
No 232
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.32 E-value=9.4e-12 Score=146.56 Aligned_cols=297 Identities=11% Similarity=0.111 Sum_probs=211.0
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHH
Q 002234 140 SEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 219 (949)
Q Consensus 140 ~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~ 219 (949)
+.+|+..+..++... ......+...+++..|+.+| .+.+..+++.|+.+|.+++..++..+..+. ..|++++|+.
T Consensus 137 q~~Aa~aL~nia~~~---~~~~~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~-~~g~i~~Ll~ 211 (529)
T 3tpo_A 137 QFESAWALTNIASGT---SEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGAGSAFRDLVI-KHGAIDPLLA 211 (529)
T ss_dssp HHHHHHHHHHHHTSC---HHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhccCHHHHHHHH-HcCCcHHHHH
Confidence 444544444444322 22222345555666677644 467899999999999999776666666666 7899999999
Q ss_pred HHhhC---------hhhHHHHHHhcCCChH---HHHH-hhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcc
Q 002234 220 LFKKG---------LLEAVVLIDLLRPSTR---TLIE-MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 286 (949)
Q Consensus 220 llk~g---------~~~Aa~~l~~L~~~~~---~~~~-~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 286 (949)
+|+.. ...|+.+|.+|..... .+.. -+.+|.|+.+|..+..+- -.. +...|..+..
T Consensus 212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v------~~~-a~~aL~~l~~---- 280 (529)
T 3tpo_A 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV------LAD-SCWAISYLTD---- 280 (529)
T ss_dssp TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH------HHH-HHHHHHHHHS----
T ss_pred HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH------HHH-HHHHHHHhhh----
Confidence 99764 2356677887743322 2333 334599999988764321 112 2222333321
Q ss_pred cccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHH
Q 002234 287 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFL 366 (949)
Q Consensus 287 ~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l 366 (949)
...+....++..|+++.|++++..++...+..|+.+|.++...+...+..+.+.+.+++|+.||.+.....|..|..+|
T Consensus 281 -~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 281 -GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp -SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred -hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2235566788899999999999999999999999999999888888888999999999999999999988899999999
Q ss_pred HHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCC-CCCccHHHHHHHHHHHhhc
Q 002234 367 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPR-KMSIYREEAIDTLISCLRN 445 (949)
Q Consensus 367 ~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~-~~~~~r~~~~~~l~~~l~~ 445 (949)
.++..-+ ....+.+.+.|.+ ..|+.+|+.+..+-+--|+..|.++..-.++. ..-+...+++++|+..|++
T Consensus 360 ~nl~~~~-----~~~~~~v~~~g~i---~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 360 SNITAGR-----QDQIQQVVNHGLV---PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHTSC-----HHHHHHHHHTTHH---HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHhccc-----HHHHHHHHhcCcH---HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 9997653 2233445566655 56899999999999999999999885433321 1123356789999999998
Q ss_pred CCChHHHHHHHHHHHhc
Q 002234 446 SDYPAAQLAAAKTIVSL 462 (949)
Q Consensus 446 ~~~~~~~~~~~~~l~~l 462 (949)
.| ++.+..+..+|.|+
T Consensus 432 ~d-~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 432 KD-TKIIQVILDAISNI 447 (529)
T ss_dssp SC-HHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHH
Confidence 76 46677888998886
No 233
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.31 E-value=1.8e-10 Score=141.70 Aligned_cols=275 Identities=10% Similarity=0.053 Sum_probs=167.0
Q ss_pred cccccccccEEEEecCCCC---eEEEecC-----C-ceee-------ecCCCCceEEEEEeCC--EEEEEeCC-C----c
Q 002234 633 YSPLAFEMVKVLSNGHDSS---ADFWNHR-----E-LVHV-------DSSENGKVLSIACFRD--KIFSGHSD-G----T 689 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~---I~vWd~~-----~-~~~~-------~~~h~~~V~~l~~s~d--~lasgs~D-g----~ 689 (949)
.....++|.+++....++. -.+|..+ . .... ..+|+..+..++|||| +|+.++.+ | +
T Consensus 111 ~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~ 190 (741)
T 1yr2_A 111 FGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRT 190 (741)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEE
T ss_pred cCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEE
Confidence 3444588998877655433 5566532 1 1222 2234457889999997 66655443 3 5
Q ss_pred EEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCc--------------EEEEECCCCee--EEEEe-ecC
Q 002234 690 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT--------------ARVWSIGNEEI--HCVQV-HDI 752 (949)
Q Consensus 690 I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~--------------I~vWd~~~~~~--~~~~~-~~~ 752 (949)
|++||+.+++ .+.. ..+...+..++|+|| +.|+.++.|+. |++|++.++.. ..+.. ..+
T Consensus 191 i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 191 VKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp EEEEETTTCC--EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred EEEEECCCCC--CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 9999999994 3332 112222357899999 99998887665 88999987652 12211 111
Q ss_pred CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC--c-eeeeeccc
Q 002234 753 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG--T-FATIQTGH 829 (949)
Q Consensus 753 ~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~--~-~~~~~~~~ 829 (949)
...+..+. |+|||+.++....++. ..+..|.+||+.++ . ..
T Consensus 267 ~~~~~~~~-------~SpDG~~l~~~~~~~~-----------------------~~~~~l~~~d~~~~~~~~~~------ 310 (741)
T 1yr2_A 267 PKRGHGAS-------VSSDGRWVVITSSEGT-----------------------DPVNTVHVARVTNGKIGPVT------ 310 (741)
T ss_dssp TTCEEEEE-------ECTTSCEEEEEEECTT-----------------------CSCCEEEEEEEETTEECCCE------
T ss_pred CeEEEEEE-------ECCCCCEEEEEEEccC-----------------------CCcceEEEEECCCCCCcccE------
Confidence 22344444 8999987654432210 02347889998876 3 22
Q ss_pred ccccCCCCCEEEEEEeCCceEEEEEECCC---CEEEEEECCCC--eeEEeecC-CCcEEEEEEcCC-EEEEEECCCeEEE
Q 002234 830 RKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNY--NMVGSLPT-LSEVRAMVVSSE-LVYLGCKGGTVEI 902 (949)
Q Consensus 830 ~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg---~~I~iwd~~~~--~~~~~~~~-~~~v~~l~~s~d-~l~sgs~dg~I~v 902 (949)
.+..+...+....+ +++..++..+.++ ..|.+||+.++ .....+.+ ...+..+.++.+ .+++...|+..+|
T Consensus 311 -~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 -ALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQV 388 (741)
T ss_dssp -EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEE
T ss_pred -EecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEE
Confidence 22233334444433 5555555555432 36999999874 33444443 345667888866 6777788888777
Q ss_pred EECC-CCcEEEEeccccccceeEEEEeCCCCEEEEE----eCCCcEEEEeCC
Q 002234 903 WDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIG----TSDGRIQAWGLS 949 (949)
Q Consensus 903 wd~~-~~~~~~~l~~~h~~~I~~l~~spdg~~L~sg----s~Dg~I~iWdl~ 949 (949)
|.++ ++.....+...+.+.|..+.++||++.++.. ...++|++||+.
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 7554 4566666643346678999999999766522 245789999863
No 234
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=4.1e-09 Score=117.92 Aligned_cols=265 Identities=10% Similarity=-0.021 Sum_probs=162.7
Q ss_pred ccccEEEEecC--CC---CeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEe----------CCCcEEEEecCCCce
Q 002234 638 FEMVKVLSNGH--DS---SADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGSIL 700 (949)
Q Consensus 638 ~~~~~l~s~s~--dg---~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs----------~Dg~I~vWd~~t~~~ 700 (949)
+++.+++.... .. +|.+||..+......-..+....++++|| +++.+. .+++|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-- 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-- 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--
Confidence 56666555542 22 78999987432222222222229999997 555554 3688999999987
Q ss_pred eeeEEeccc-------CCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEe-ecCCCceeeeeeccceEEEEe
Q 002234 701 HLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 701 ~~i~~l~~H-------~~~V~~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~fsp 770 (949)
+.+.++.-. ...-..+.|+|||++|+.+.. +++|.++| .+++. ... ...... ..+.|
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~~~~i~~~~~----------~~~~~ 174 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--DDQLLSSPTC----------YHIHP 174 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--EeEEcCCCce----------EEEEe
Confidence 555554321 123457899999999998874 57899999 88753 222 211111 12445
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCE-EEEEEeCCce
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV-HALQVHNGLV 849 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~ 849 (949)
++.. .+++.+.||.+.+||. +++..........+ ....++ ....+.+++.
T Consensus 175 ~~~~---------------------------~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 175 GAPS---------------------------TFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSG 225 (373)
T ss_pred CCCc---------------------------eEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCC
Confidence 5433 3556678999999999 77765321100011 111222 2234444332
Q ss_pred EEEEEECCCCEEEEEECCCCe--eEEeecC-----------CCcEEEEEEcCC--EEEEEEC----------CCeEEEEE
Q 002234 850 YTASTSLDGAAVKMWSTSNYN--MVGSLPT-----------LSEVRAMVVSSE--LVYLGCK----------GGTVEIWD 904 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l~~s~d--~l~sgs~----------dg~I~vwd 904 (949)
.++..+.++ .+.+.|+.+.. .+..+.. ......+.+++| .++++.. ++.|.++|
T Consensus 226 ~~~~~~~~~-~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID 304 (373)
T 2mad_H 226 RIVWPVYSG-KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred EEEEEcCCc-eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence 222222344 89999986542 2233321 122444778887 5555442 36899999
Q ss_pred CCCCcEEEEeccccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCC
Q 002234 905 QKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 905 ~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iWdl~ 949 (949)
..+++.+.++..++ ...+++|+|||+ .++++. .++.|.+||+.
T Consensus 305 ~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 305 GLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 99999999996443 589999999999 788877 58999999974
No 235
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.31 E-value=7.5e-13 Score=130.44 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHH
Q 002234 1 MADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIA 80 (949)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~ 80 (949)
|++.+.-+......++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+....++ ||..+.+.|.
T Consensus 1 ~~~~~g~~~~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~~~~~i~ 79 (170)
T 3hcs_A 1 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF-PDNFAKREIL 79 (170)
T ss_dssp ----CCBCSEESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE-ECHHHHHHHH
T ss_pred CCCCCCCChhhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhh-hhHHHHHHHh
Confidence 344333333344578999999999999999999999999999999999987666999999999988885 9999999887
Q ss_pred HHH
Q 002234 81 SWQ 83 (949)
Q Consensus 81 ~~~ 83 (949)
++.
T Consensus 80 ~l~ 82 (170)
T 3hcs_A 80 SLM 82 (170)
T ss_dssp TSE
T ss_pred hcc
Confidence 654
No 236
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.31 E-value=1.7e-10 Score=127.61 Aligned_cols=223 Identities=10% Similarity=0.058 Sum_probs=137.5
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---C--cEEEEECCCCeeEEEEeecCCCceeeeee
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---K--TARVWSIGNEEIHCVQVHDIKDQIQNLAV 761 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~ 761 (949)
++.|.+||+.+++. ..+ ..+..+.|+|||++|+.++.+ + .|.+||+.+++...+... .. +..+.
T Consensus 42 ~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~- 110 (347)
T 2gop_A 42 ENTIVIENLKNNAR---RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLE- 110 (347)
T ss_dssp EEEEEEEETTTCCE---EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEE-
T ss_pred cceEEEEeCCCCce---EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-cccee-
Confidence 67899999998842 223 568899999999999988764 3 388889988864444333 22 55555
Q ss_pred ccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe-CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 762 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 762 ~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
|+|||+.++....+..-. .....+..+.+. ++.-+.......|.+||+.+++....+. . . .+.
T Consensus 111 ------wspdg~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~------~-~-~~~ 174 (347)
T 2gop_A 111 ------WNEDSRKLLIVGFKRRED--EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE------K-P-RFS 174 (347)
T ss_dssp ------ECTTSSEEEEEEECCCC-----------CCCC---------CEEEEEEEETTTTEEEEEEE------E-E-TTC
T ss_pred ------ECCCCCEEEEEEccCCCc--CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec------C-C-Ccc
Confidence 999999988776541000 000000000010 0100111234579999999887632221 1 1 577
Q ss_pred EEEEeCCceEEEEEECCC--------CEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECC--------CeEEE
Q 002234 841 ALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG--------GTVEI 902 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~d--------g~I~v 902 (949)
.+.|+|++ ++++++.++ ..|.++| +++......+ ..+..+ +|| .++.++.+ ..|++
T Consensus 175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred cccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEE
Confidence 89999999 666665542 1455555 5554333334 445444 776 56666543 47888
Q ss_pred EECCCCcEEEEeccccccceeE-EEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 903 WDQKRQIRIETLQTGTSGKVQC-MALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~-l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
|| +++.. .+..+|...+.. +.|+ || ++++++.+|.+++| +
T Consensus 249 ~d--~~~~~-~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 249 YD--GKEVM-GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EC--SSCEE-ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred EC--CCceE-eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 88 55543 443466778886 9999 98 99999999999999 6
No 237
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.29 E-value=1.8e-11 Score=144.23 Aligned_cols=310 Identities=14% Similarity=0.126 Sum_probs=224.2
Q ss_pred HHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceee
Q 002234 127 AITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHT 206 (949)
Q Consensus 127 ~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~ 206 (949)
.+.-+. ++....++.|+..+..+...... ....+..++++..++.+|..+.+..+++.+..+|.+| +.++.++..
T Consensus 22 Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~---~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~~~~~~ 96 (529)
T 1jdh_A 22 LTKLLN-DEDQVVVNKAAVMVHQLSKKEAS---RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLA 96 (529)
T ss_dssp HHHHHT-CSCHHHHHHHHHHHHHHHTSHHH---HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHcCCcc---HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCchhHHH
Confidence 333343 44444477888778777754321 1122445677888999998877889999999999999 445557777
Q ss_pred ccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCC----hHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHH
Q 002234 207 LTRVESDVERIVALFKKG----LLEAVVLIDLLRPS----TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLG 278 (949)
Q Consensus 207 i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~----~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~ 278 (949)
+. ..|.++.|+.+|+.+ ...|+.+|.+|... ...+...+.+|+|+.+|+.++.. -...+...|.
T Consensus 97 i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~-------~~~~~~~~L~ 168 (529)
T 1jdh_A 97 IF-KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQ 168 (529)
T ss_dssp HH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH-------HHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHH-------HHHHHHHHHH
Confidence 87 469999999999987 57788899999532 22334567779999999875321 1122222333
Q ss_pred HHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcc
Q 002234 279 QMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE 358 (949)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~ 358 (949)
.+-. .+.+++..+...|+++.|+++++.++.+.+..++.-++..+..+...+..+.+.+.+++++.++...+...
T Consensus 169 ~la~-----~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 169 ILAY-----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHT-----TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHh-----CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 3311 24678889999999999999999888777666555555555567778888999999999999999888888
Q ss_pred hhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHH
Q 002234 359 RFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDT 438 (949)
Q Consensus 359 ~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~ 438 (949)
+..++.+|.+|....... ++.-..+..|+.+|+...++-+..++++|.+|..-.+..+..+.+.++++.
T Consensus 244 ~~~a~~~L~~l~~~~~~~-----------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp HHHHHHHHHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCChhh-----------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 888999999987654322 122245677999998888888888999999984422223445556789999
Q ss_pred HHHHhhcC-CChHHHHHHHHHHHhcCcc
Q 002234 439 LISCLRNS-DYPAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 439 l~~~l~~~-~~~~~~~~~~~~l~~l~~~ 465 (949)
|+..|.+. +.+.++..|+++|.||+..
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 99999874 4478899999999999653
No 238
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.29 E-value=1.1e-11 Score=145.27 Aligned_cols=310 Identities=11% Similarity=0.100 Sum_probs=218.7
Q ss_pred HHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceee
Q 002234 127 AITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHT 206 (949)
Q Consensus 127 ~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~ 206 (949)
.|+-|..++.-+-+++|+..|..++.. +......+...+++..|+.+|. +.+..+++.|+.+|.+++...+..+..
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~---~~e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASG---TSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344454444333356666666666532 2333333566667777887775 578999999999999996655555555
Q ss_pred ccccCCcHHHHHHHHhhC---------hhhHHHHHHhcCCCh---HHHHHh-hhhHHHHHHHHhccccchhcccCchhhH
Q 002234 207 LTRVESDVERIVALFKKG---------LLEAVVLIDLLRPST---RTLIEM-DMMESLMTVIKKKEEDFLKMCLKPKSVS 273 (949)
Q Consensus 207 i~~~~~~i~~l~~llk~g---------~~~Aa~~l~~L~~~~---~~~~~~-~~~~~lv~~l~~~~~~~~~~~~~~~~a~ 273 (949)
+. ..|.++.|+.+|+.. ...|+.+|.++.... ..+..+ +.+|.|+.+|..+..+- ...+
T Consensus 181 v~-~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-------~~~A 252 (510)
T 3ul1_B 181 VI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------LADS 252 (510)
T ss_dssp HH-HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH-------HHHH
T ss_pred HH-HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH-------HHHH
Confidence 55 789999999999764 235666777774332 223333 34599999987764321 1122
Q ss_pred HHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHh
Q 002234 274 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 353 (949)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~ 353 (949)
...|..|. ....+....++..|+++.|+++++.++...+..|+.+|.++...+...+..+.+.+.+++|+.||.+
T Consensus 253 ~~aL~~L~-----~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 253 CWAISYLT-----DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHT-----SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHHHHh-----hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 33333331 1223455677888999999999999999999999999999988888888899999999999999999
Q ss_pred cCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCC-CCCccH
Q 002234 354 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPR-KMSIYR 432 (949)
Q Consensus 354 ~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~-~~~~~r 432 (949)
.+...|..|...|.++...+ ....+.+.+.|.+ ..|+.+|+.+..+-+--|+..|.++..-.++. ..-+.+
T Consensus 328 ~~~~v~~~A~~aL~nl~a~~-----~~~~~~v~~~g~i---~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITAGR-----QDQIQQVVNHGLV---PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp SSHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHH---HHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCc-----HHHHHHHHhcCCH---HHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 98888999999999997653 2334445666655 56899999999998889999999885433221 112336
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 002234 433 EEAIDTLISCLRNSDYPAAQLAAAKTIVSL 462 (949)
Q Consensus 433 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l 462 (949)
.+++++|+..|++.| ++.+..+.++|.|+
T Consensus 400 ~g~i~~L~~LL~~~d-~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 400 CGIIEPLMNLLSAKD-TKIIQVILDAISNI 428 (510)
T ss_dssp TTCHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 678999999998875 46677888998876
No 239
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=8.3e-13 Score=109.33 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=48.2
Q ss_pred CCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 13 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
....+++.||||++.+.+||+++|||+||+.||.+|+..+ ..||.||+.+....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDFL 64 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhhc
Confidence 3456789999999999999999999999999999999874 589999999875544
No 240
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.29 E-value=2.3e-11 Score=146.92 Aligned_cols=303 Identities=13% Similarity=0.118 Sum_probs=221.8
Q ss_pred ccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCc
Q 002234 134 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 213 (949)
Q Consensus 134 s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~ 213 (949)
++....++.|+..+..++.... ........++++..++..|..+.+..+++.++.+|.+|+ .+..++..+. ..|.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~---~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~~~~~~i~-~~g~ 99 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEA---SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIF-KSGG 99 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTT---HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSHHHHHHHH-TTTH
T ss_pred CCCHHHHHHHHHHHHHHHCCCh---hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cChhhHHHHH-HcCC
Confidence 3344557788888888775442 222224456788889999988778999999999999984 4555777777 4599
Q ss_pred HHHHHHHHhhC----hhhHHHHHHhcCCC----hHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCc
Q 002234 214 VERIVALFKKG----LLEAVVLIDLLRPS----TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 285 (949)
Q Consensus 214 i~~l~~llk~g----~~~Aa~~l~~L~~~----~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 285 (949)
++.|+.+|+.+ ...|+.+|.+|... ...+..-+.+|.|+.+|+.+.. .-..++...|..|-.
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-------~~~~~a~~~L~~La~--- 169 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-------KFLAITTDCLQILAY--- 169 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH-------HHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH-------HHHHHHHHHHHHHHh---
Confidence 99999999987 57888899999532 2233456777999999987642 122333334443321
Q ss_pred ccccccchhhhcchhhHHHHHHhhhcccHHH-HHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHH
Q 002234 286 ESIVSSIANTIVSSKVFESVISSLEAEWAEE-RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVC 364 (949)
Q Consensus 286 ~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~-~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 364 (949)
.+.+++..+...|+++.|+++++.++.+. +..++.+|.++ ..+...|..+.+.+.+++++.++...+...+..++.
T Consensus 170 --~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL-s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 170 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred --cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH-hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 25678889999999999999999887554 44555555555 457778899999999999999999888888889999
Q ss_pred HHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhh
Q 002234 365 FLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLR 444 (949)
Q Consensus 365 ~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~ 444 (949)
.|.+|....... ++.-..+..|+..|+...++-+..++..|.+|..-....+..+.+.++++.|+..|.
T Consensus 247 ~L~nL~~~~~~~-----------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 247 TLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp HHHHHGGGCTTC-----------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhhcchhh-----------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 999997653221 122245677888998887777888999998884422233445567789999999999
Q ss_pred cCC-ChHHHHHHHHHHHhcCcc
Q 002234 445 NSD-YPAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 445 ~~~-~~~~~~~~~~~l~~l~~~ 465 (949)
+.+ .+.++..|+++|.+|+.+
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSS
T ss_pred ccCCcHHHHHHHHHHHHHHhcC
Confidence 844 468899999999999753
No 241
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=2.3e-12 Score=104.66 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=48.7
Q ss_pred CcccCcCccc-cccCc----eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 002234 17 KDFVCPITTH-IFDDP----VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 72 (949)
Q Consensus 17 ~~~~Cpic~~-~~~dP----v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 72 (949)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.||+++....+. ++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR-VQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE-EE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce-ee
Confidence 5788999999 99999 57899999999999999887667899999999987773 65
No 242
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.27 E-value=6.2e-09 Score=111.85 Aligned_cols=235 Identities=9% Similarity=0.074 Sum_probs=156.4
Q ss_pred CCCCceEEEEEeCC-EEEEEe-CCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 002234 666 SENGKVLSIACFRD-KIFSGH-SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 743 (949)
Q Consensus 666 ~h~~~V~~l~~s~d-~lasgs-~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~ 743 (949)
.+...+.++++.++ .+..+. .++.|.+||.. +... ......+...+.+++++++|.+.++...++.|..||.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 44567999999986 444444 47899999998 6322 12223356789999999999988887778899999986 33
Q ss_pred eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCce
Q 002234 744 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTF 822 (949)
Q Consensus 744 ~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~ 822 (949)
............+..+. +.++|+ ++.+ ..++.|..||. ++..
T Consensus 89 ~~~~~~~~~~~~~~~i~-------~~~~g~-----------------------------l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGIT-------EGPNGD-----------------------------IWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp EEEEECSSTTCCEEEEE-------ECTTSC-----------------------------EEEEETTTTEEEEECT-TCCE
T ss_pred EEEEeCCCcCCCceeeE-------ECCCCC-----------------------------EEEEecCCceEEEECC-CCCE
Confidence 22222111122233332 444443 4443 45678999998 5554
Q ss_pred eeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEe-ec-CCCcEEEEEEcCC-EEEEEE-CCC
Q 002234 823 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGG 898 (949)
Q Consensus 823 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~d-~l~sgs-~dg 898 (949)
... ....+...+..+++++++.+.++...++ .|..||. +++.... .. ....+..++++++ .++.+. .++
T Consensus 132 ~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 132 REY-----ELPNKGSYPSFITLGSDNALWFTENQNN-AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp EEE-----ECSSTTCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEe-----cCCCCCCCCceEEEcCCCCEEEEeCCCC-EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 321 1122345789999999887777665444 8999999 6655432 22 3466889999987 455554 578
Q ss_pred eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 899 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 899 ~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.|.+||. +++........+...+.+++++++|++.++...++.|..||.
T Consensus 205 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 205 KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 9999999 666443222234567899999999997776667888999885
No 243
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.27 E-value=1.1e-09 Score=121.17 Aligned_cols=285 Identities=13% Similarity=0.106 Sum_probs=181.0
Q ss_pred cccccEEEEecC-----CCCeEEEecCCc--eeeecCCCCceEEEEEeCC--EEEEEe----------CCCcEEEEecCC
Q 002234 637 AFEMVKVLSNGH-----DSSADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRG 697 (949)
Q Consensus 637 ~~~~~~l~s~s~-----dg~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d--~lasgs----------~Dg~I~vWd~~t 697 (949)
.+++.+++.... ++.|.+.|..+. +........+ . ++++|| +++.+. .+++|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 467776666544 678999998742 3333323333 4 999997 444443 467899999999
Q ss_pred CceeeeEEeccc-------CCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEeecCCCceeeee-ec-cceE
Q 002234 698 SILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLA-VS-NSIL 766 (949)
Q Consensus 698 ~~~~~i~~l~~H-------~~~V~~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~-~~-~~~~ 766 (949)
+ +.+.++.-. ...-..+.|+|||++++.+.. +++|.++|+.+++.. ......+. ..+. .. ....
T Consensus 119 ~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv--~tI~v~g~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 119 L--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK--RMLDVPDC-YHIFPTAPDTFF 193 (386)
T ss_dssp C--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEECCSE-EEEEEEETTEEE
T ss_pred C--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE--EEEECCCc-ceeecCCCceeE
Confidence 8 666665321 124556899999999988864 689999999998632 22221111 1110 00 0123
Q ss_pred EEEeCCCEEEEEEec-CeEE-----EecCCC-Cce-EEEEe--CCEEEEEECCCcEEEEECCCCceeee--ec---cccc
Q 002234 767 CFIPQGAGIKVHLRN-GKTK-----LLNSSK-YPK-CLALV--QGKVYCGCQDGAIQEIDLATGTFATI--QT---GHRK 831 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~-g~i~-----~~~~~~-~v~-~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~---~~~~ 831 (949)
..++||+.+.+.... +.+. .++... .+. ...|. +++++..+.+|.|.+.|..++..... .. ....
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 273 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccc
Confidence 578888877777654 5541 222111 111 13443 57777788899999999987653211 10 0000
Q ss_pred ccC-CCCCEEEEEEeCCceEEEEEEC---------CCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEE-CC
Q 002234 832 LLG-KANPVHALQVHNGLVYTASTSL---------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KG 897 (949)
Q Consensus 832 ~~~-h~~~V~~l~~~~~~~~l~s~s~---------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs-~d 897 (949)
..+ .......+++++++..+..... .+++|.+.|+.+++.+.++.-...++++++++| .+++.. .+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence 000 0122335677876665555432 124899999999999999987778999999998 466654 48
Q ss_pred CeEEEEECCCCcEEEEeccccccceeEEEEeCC
Q 002234 898 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 930 (949)
Q Consensus 898 g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spd 930 (949)
+.|.|+|..+++.+.++.. .+.-+.|.+++|
T Consensus 354 ~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 9999999999999999953 344577778776
No 244
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.27 E-value=3.9e-09 Score=124.29 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=157.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCeeEEEEeecCCCcee
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG--NEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~--~~~~~~~~~~~~~~~v~ 757 (949)
++++...+++|.+||..++ +.+.++. ....+..+.|+|||+++++++.|+.|.+||+. +++ ............
T Consensus 169 ~~V~~~~~~~V~viD~~t~--~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v~~i~~G~~P~ 243 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTY--EIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGSEAR 243 (567)
T ss_dssp EEEEETTTTEEEEEETTTC--CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCSEEE
T ss_pred EEEEeCCCCeEEEEECCCC--eEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--EeEEEecCCCCc
Confidence 6777788999999999999 6777775 33467799999999999999999999999996 543 222222222334
Q ss_pred eeeeccceEEEE----eCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccccc-c
Q 002234 758 NLAVSNSILCFI----PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK-L 832 (949)
Q Consensus 758 ~l~~~~~~~~fs----p~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~ 832 (949)
.+. |+ |||+++ +++...+++|.++|..+.+.+........ .
T Consensus 244 ~ia-------~s~~~~pDGk~l---------------------------~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 244 SIE-------TSKMEGWEDKYA---------------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEE-------ECCSTTCTTTEE---------------------------EEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred eeE-------EccccCCCCCEE---------------------------EEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 444 88 689874 33445568899999998887765432110 1
Q ss_pred cC---CC-CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee--EEeecCCCcEEEEEEcCC--EEEEE-ECCCeEEEE
Q 002234 833 LG---KA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIW 903 (949)
Q Consensus 833 ~~---h~-~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~d--~l~sg-s~dg~I~vw 903 (949)
.+ |. ..+..+..++++..++....+.+.|.++|..+.+. +..+........+.|+|+ +++++ ..++.|.++
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 11 22 25778888876555555445556999999987542 334445667788999998 55554 467899999
Q ss_pred ECCCCcEEEEecc-c---cccceeEEEEeCCCCEE-EEEe-CCCcEEEEeCC
Q 002234 904 DQKRQIRIETLQT-G---TSGKVQCMALDDNEEFL-VIGT-SDGRIQAWGLS 949 (949)
Q Consensus 904 d~~~~~~~~~l~~-~---h~~~I~~l~~spdg~~L-~sgs-~Dg~I~iWdl~ 949 (949)
|..+++.+..+.. + |.+.-..+ ++|++..+ +++. .+++|.++|.+
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence 9999998877754 2 33211122 58885444 4543 46899999863
No 245
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.27 E-value=1.8e-11 Score=144.24 Aligned_cols=318 Identities=11% Similarity=0.073 Sum_probs=227.5
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhc-CChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhccc
Q 002234 121 ITELKHAITSLCMSEILNESEMAVLQIERCWLEAS-MELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR 199 (949)
Q Consensus 121 ~~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~ 199 (949)
...+..++..|.+. ..+.+..|+..++++..... +.... +...+++..|+++|..+.++.+++.|+.+|.++...
T Consensus 73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~---~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEE---VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHH---HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHH---HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 34466677777644 34557788877877764332 22222 445567777888887765589999999999999876
Q ss_pred CccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCC-hH---HHHHhhhhHHHHHHHHhccccchhcccCchh
Q 002234 200 DKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TR---TLIEMDMMESLMTVIKKKEEDFLKMCLKPKS 271 (949)
Q Consensus 200 ~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~-~~---~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~ 271 (949)
+...+..+. ..|+++.|+.+|+.+ ...|+.+|.+|... +. .+...+.+|+|+.+|....+.. -..
T Consensus 149 ~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~------v~~ 221 (528)
T 4b8j_A 149 TSENTKVVI-DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLS------MLR 221 (528)
T ss_dssp CHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHH------HHH
T ss_pred CHHHHHHHH-hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHH------HHH
Confidence 666666666 569999999999887 56788899999633 32 3334456799999995443221 123
Q ss_pred hHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHH
Q 002234 272 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 351 (949)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll 351 (949)
.+...|..|.... .........|+++.|+.++..++.+.+..|+.+|.++..........+.+.+.+++|+.+|
T Consensus 222 ~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 222 NATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 3444555553322 2233344589999999999999999999999999998877666667888899999999999
Q ss_pred HhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhc-CCccchhHHHHHHhhhcccCCCCCCc
Q 002234 352 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA-NHDQCPVVAGLLLQLDLLAEPRKMSI 430 (949)
Q Consensus 352 ~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~-~~~~~~~~a~~l~~l~~l~~~~~~~~ 430 (949)
...+...+..|+.+|.++.... ....+.+-+.|.+ ..|+.+|+.. .++-+.-|+.+|.++..-.......+
T Consensus 296 ~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 296 LHPSPSVLIPALRTVGNIVTGD-----DAQTQCIIDHQAL---PCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHTTTHH---HHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHcCC-----HHHHHHHHHhhhH---HHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9998889999999999997642 2233344555555 5588888877 67777788999988854221122234
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 431 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 431 ~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
+..++++.|+..|.+++ ..++..|+.+|.||+-
T Consensus 368 ~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTAE-FDIKKEAAWAISNATS 400 (528)
T ss_dssp HHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHc
Confidence 45577899999999884 5778899999999854
No 246
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.27 E-value=3.4e-11 Score=148.07 Aligned_cols=300 Identities=13% Similarity=0.144 Sum_probs=215.3
Q ss_pred hhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHH
Q 002234 138 NESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERI 217 (949)
Q Consensus 138 ~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l 217 (949)
.-++.|+..+..+.+...... .....+.++..++.+|..+.+..+++.|+.+|.+| +.++.++..|. ..|.++.|
T Consensus 165 ~vr~~A~~~L~~L~~~~~~~~---~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L-s~~~~~~~~i~-~~g~I~~L 239 (780)
T 2z6g_A 165 VVVNKAAVMVHQLSKKEASRH---AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIF-KSGGIPAL 239 (780)
T ss_dssp HHHHHHHHHHHHHHTSHHHHH---HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSHHHHHHHH-HTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhHH---HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhHHHHH-HcCCHHHH
Confidence 446677666666665332111 11335677888898988777899999999999998 45556677777 46999999
Q ss_pred HHHHhhC----hhhHHHHHHhcCCC---hH-HHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCccccc
Q 002234 218 VALFKKG----LLEAVVLIDLLRPS---TR-TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIV 289 (949)
Q Consensus 218 ~~llk~g----~~~Aa~~l~~L~~~---~~-~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 289 (949)
+.+|+.+ +.+|+.+|.+|... .. .+...+.+|.|+.+|+..... -...+...+..|- ..+
T Consensus 240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~-------v~~~a~~aL~~La-----~~~ 307 (780)
T 2z6g_A 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILA-----YGN 307 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHH-----TTC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHH-------HHHHHHHHHHHHh-----cCC
Confidence 9999987 67889999999633 22 223456779999999874311 1112222333221 134
Q ss_pred ccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHh
Q 002234 290 SSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 369 (949)
Q Consensus 290 ~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l 369 (949)
.+++..++..|+++.|+.+++.++.+.+..++..++..+..+...+..+.+.+.+++|+.++...+...+..|+.+|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 67888999999999999999988877665444444444455777888999999999999999988878888889999998
Q ss_pred hhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcC-CC
Q 002234 370 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNS-DY 448 (949)
Q Consensus 370 ~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~-~~ 448 (949)
....... ++.-..+..|+..|+...++-+..++.+|.+|..-.+..+..+.++++++.|+..|.+. +.
T Consensus 388 ~~~~~~~-----------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 456 (780)
T 2z6g_A 388 SDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456 (780)
T ss_dssp HTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC
T ss_pred hccchhh-----------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH
Confidence 7654321 12234567788888888888888889999888543223344555678999999999884 44
Q ss_pred hHHHHHHHHHHHhcCcc
Q 002234 449 PAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 449 ~~~~~~~~~~l~~l~~~ 465 (949)
.+++..|+++|.||+..
T Consensus 457 ~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 457 EDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47899999999999754
No 247
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.26 E-value=2.2e-09 Score=116.54 Aligned_cols=238 Identities=7% Similarity=0.032 Sum_probs=149.8
Q ss_pred CCCCceEEEEEeCC--EEEE-------EeCCCcEEEEecCCCceeeeEE--ecccCCCEEEEEEecC-CCEEEEEeCCCc
Q 002234 666 SENGKVLSIACFRD--KIFS-------GHSDGTIKVWTGRGSILHLIQQ--IREHTKAVTGLAILQS-GEMLYSGSLDKT 733 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~las-------gs~Dg~I~vWd~~t~~~~~i~~--l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~ 733 (949)
..-....+++|+++ ++++ +..++.|.+||..+++...+.. ..++...+..++++++ |+++++.. ++.
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence 34456688999876 4555 4778999999988874322111 0125577999999999 76555544 447
Q ss_pred EEEEECCCCeeEEE-EeecC---CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC
Q 002234 734 ARVWSIGNEEIHCV-QVHDI---KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 809 (949)
Q Consensus 734 I~vWd~~~~~~~~~-~~~~~---~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D 809 (949)
|.+||.. ++.... ..... ...+.++ ++.++|+..+ +...+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i-------~~d~~g~l~v----------------------------~~~~~ 137 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDC-------AFDYEGNLWI----------------------------TAPAG 137 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEE-------EECTTSCEEE----------------------------EECBC
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCE-------EECCCCCEEE----------------------------EecCc
Confidence 9999998 653322 11110 0123333 3666665322 22222
Q ss_pred ---------------CcEEEEECCCCceeeeecccccccCCCCCEEEEEEe----CCceEEEEEECCCCEEEEEECC-CC
Q 002234 810 ---------------GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH----NGLVYTASTSLDGAAVKMWSTS-NY 869 (949)
Q Consensus 810 ---------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~Dg~~I~iwd~~-~~ 869 (949)
+.|..||.. ++..... .+......++++ +++..+..+...++.|.+||.. ++
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g 209 (314)
T 1pjx_A 138 EVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209 (314)
T ss_dssp BCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred ccccccccccccCCCCeEEEECCC-CCEEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence 456667765 4433211 122356889999 9986555444333499999976 44
Q ss_pred e-----eEEeecCC--CcEEEEEEcCC-EEE-EEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEE-EEeC
Q 002234 870 N-----MVGSLPTL--SEVRAMVVSSE-LVY-LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV-IGTS 939 (949)
Q Consensus 870 ~-----~~~~~~~~--~~v~~l~~s~d-~l~-sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~-sgs~ 939 (949)
. ....+... ..+..++++++ .++ +...++.|.+||..+++.+..+. .+...+.+++|+|||+.|+ +...
T Consensus 210 ~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 210 KIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp EEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCC
Confidence 4 22233322 56889999987 444 44578899999998787766663 4556899999999999555 4456
Q ss_pred CCcEEEEeCC
Q 002234 940 DGRIQAWGLS 949 (949)
Q Consensus 940 Dg~I~iWdl~ 949 (949)
++.|..|+++
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 6889998863
No 248
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=8e-12 Score=108.46 Aligned_cols=57 Identities=21% Similarity=0.422 Sum_probs=49.8
Q ss_pred CCCCCCCcccCcCccccccC----ceecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCCCC
Q 002234 11 GKHTPPKDFVCPITTHIFDD----PVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTK 67 (949)
Q Consensus 11 ~~~~~~~~~~Cpic~~~~~d----Pv~~~cghtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~ 67 (949)
....+.+++.||||++.|.+ |++++|||+||+.||.+|+... ...||.||+.+....
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 34567889999999999999 9999999999999999999864 458999999887543
No 249
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.25 E-value=2.6e-12 Score=106.57 Aligned_cols=58 Identities=21% Similarity=0.555 Sum_probs=51.3
Q ss_pred CCCCcccCcCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccH
Q 002234 14 TPPKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 73 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~dP-------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~ 73 (949)
...+++.||||++.|.+| ++++|||+||+.||.+|+... ..||.||+.+....+. +++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~-~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH-PIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCC-CCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhhee-ecc
Confidence 456789999999999999 899999999999999999875 4999999999988874 653
No 250
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.24 E-value=8.7e-10 Score=121.28 Aligned_cols=218 Identities=10% Similarity=-0.002 Sum_probs=146.2
Q ss_pred CCCcEEEEecCCCceeeeEEec------ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeee
Q 002234 686 SDGTIKVWTGRGSILHLIQQIR------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 759 (949)
Q Consensus 686 ~Dg~I~vWd~~t~~~~~i~~l~------~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l 759 (949)
.+++|.+||.+++ +....+. ........+.+. +++..++...+++|.+||..+++... ..........+
T Consensus 15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--~i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--RITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--EEECCSSEEEE
T ss_pred CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--EcCCCCCCcEE
Confidence 3899999999998 4444331 122446778774 45566666678999999999986321 11122233333
Q ss_pred eeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCCCceeeeecccccccCCCCC
Q 002234 760 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 760 ~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 838 (949)
. ++++| +++++. .++.|.+||..+++......... ..++...
T Consensus 90 ~-------~~~~g-----------------------------~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-~~~~~~~ 132 (328)
T 3dsm_A 90 H-------FLSDE-----------------------------KAYVTQIWDYRIFIINPKTYEITGYIECPD-MDMESGS 132 (328)
T ss_dssp E-------EEETT-----------------------------EEEEEEBSCSEEEEEETTTTEEEEEEECTT-CCTTTCB
T ss_pred E-------EeCCC-----------------------------eEEEEECCCCeEEEEECCCCeEEEEEEcCC-ccccCCC
Confidence 3 55655 355555 78999999999988764332111 0111123
Q ss_pred EEEEEEeCCceEEEEEE-CCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC-EEEEEEC-C----------CeEEEEEC
Q 002234 839 VHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCK-G----------GTVEIWDQ 905 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~-d----------g~I~vwd~ 905 (949)
...+++. ++...++.. .+ +.|.+||..+++...++........+.++|+ .++.++. + +.|.+||.
T Consensus 133 p~~i~~~-~~~lyv~~~~~~-~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 133 TEQMVQY-GKYVYVNCWSYQ-NRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp CCCEEEE-TTEEEEEECTTC-CEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred cceEEEE-CCEEEEEcCCCC-CEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4566674 444444433 35 4999999999999888886666788999997 4444443 3 78999999
Q ss_pred CCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 906 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 906 ~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+++....+..........++|+||+++|+++.. .|.+||.+
T Consensus 211 ~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 211 ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE 252 (328)
T ss_dssp TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence 9999887774332346899999999999988765 89999863
No 251
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.2e-12 Score=99.20 Aligned_cols=48 Identities=21% Similarity=0.570 Sum_probs=42.7
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPIT 59 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~--~~~~CP~c 59 (949)
...+.+++.||||++.+.+||+++|||+||+.||.+|+.. ....||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467889999999999999999999999999999999764 45689987
No 252
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.24 E-value=8e-10 Score=135.20 Aligned_cols=239 Identities=8% Similarity=0.004 Sum_probs=156.7
Q ss_pred cccccccccEEEEecCCC-----CeEEEecCCceeee-cCCCCceEEEEEeCC--EEEEEeCCCc---------------
Q 002234 633 YSPLAFEMVKVLSNGHDS-----SADFWNHRELVHVD-SSENGKVLSIACFRD--KIFSGHSDGT--------------- 689 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg-----~I~vWd~~~~~~~~-~~h~~~V~~l~~s~d--~lasgs~Dg~--------------- 689 (949)
...+++||++|+.++.++ .|++||..+..... ..+...+..++|+|| .|+.++.++.
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 456778999998765543 89999997532221 112223678999997 7888887766
Q ss_pred -EEEEecCCCcee--eeEEecccCCCEEEEEEecCCCEEEEEeC-----CCcEEEEECCC------Ce--eEEEEeecCC
Q 002234 690 -IKVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSL-----DKTARVWSIGN------EE--IHCVQVHDIK 753 (949)
Q Consensus 690 -I~vWd~~t~~~~--~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-----Dg~I~vWd~~~------~~--~~~~~~~~~~ 753 (949)
|++|++.++... .+.....|...+..+.|+|||++|+.++. +..|.+||+.+ +. ...+.. +.
T Consensus 209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~--~~ 286 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID--NF 286 (710)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC--SS
T ss_pred EEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC--CC
Confidence 999999887422 33333346677889999999999988765 56899999976 42 222222 22
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeeccccccc
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL 833 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 833 (949)
..+.. .|+|+|+.+++....+ ..++.|.+||+.++..... ..+.
T Consensus 287 ~~~~~--------~~s~dg~~l~~~s~~~------------------------~~~~~l~~~d~~~~~~~~~----~~l~ 330 (710)
T 2xdw_A 287 EGEYD--------YVTNEGTVFTFKTNRH------------------------SPNYRLINIDFTDPEESKW----KVLV 330 (710)
T ss_dssp SSCEE--------EEEEETTEEEEEECTT------------------------CTTCEEEEEETTSCCGGGC----EEEE
T ss_pred CcEEE--------EEeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCCcccc----eecc
Confidence 22221 2778887643322110 1234689999987642000 1222
Q ss_pred CCCC--CEEEEEEeCCceEEEEEECCCC-EEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEE-EEE---CCCeEEEE
Q 002234 834 GKAN--PVHALQVHNGLVYTASTSLDGA-AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY-LGC---KGGTVEIW 903 (949)
Q Consensus 834 ~h~~--~V~~l~~~~~~~~l~s~s~Dg~-~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~-sgs---~dg~I~vw 903 (949)
.|.. .+..+.|++++.++++...|+. .|.+||+.+++....+. +...+..+.++|+ .++ +.+ ..++|+.|
T Consensus 331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 3333 5788999988888888877762 46777887787777776 4567888889887 333 333 34789999
Q ss_pred ECCCCc
Q 002234 904 DQKRQI 909 (949)
Q Consensus 904 d~~~~~ 909 (949)
|+.+++
T Consensus 411 d~~tg~ 416 (710)
T 2xdw_A 411 DLTKEE 416 (710)
T ss_dssp ETTSSS
T ss_pred ECCCCc
Confidence 998876
No 253
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.24 E-value=3.7e-12 Score=151.19 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=69.7
Q ss_pred CCCCCcccCcCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHCCCC
Q 002234 13 HTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 89 (949)
Q Consensus 13 ~~~~~~~~Cpic~~~~~dPv~~~cg-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 89 (949)
.++|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.+|++++...++ ||+.||+.|+.|+.++...
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~li-PN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVT-PNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccc-ccHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999998 69999999999987 55999999999999996 9999999999999987654
No 254
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.21 E-value=3.3e-08 Score=106.18 Aligned_cols=262 Identities=8% Similarity=0.047 Sum_probs=168.1
Q ss_pred cccccEEEEecCCCCeEEEecCCceee--ecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCC
Q 002234 637 AFEMVKVLSNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 712 (949)
Q Consensus 637 ~~~~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 712 (949)
..++...++...++.|.+||....... ...+...+.++++.++ +.++...++.|..||.. +.. ....+......
T Consensus 28 d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~ 105 (300)
T 2qc5_A 28 SEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSG 105 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCC
T ss_pred CCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCC
Confidence 345776666667889999998732222 1233467999999986 45555557889999988 532 22233334567
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCC
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 792 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~ 792 (949)
+..+++.++|++.++...++.|..||.. ++............+..+. +.++|+
T Consensus 106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~-------~d~~g~------------------- 158 (300)
T 2qc5_A 106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT-------LGSDNA------------------- 158 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE-------ECTTSS-------------------
T ss_pred CccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE-------ECCCCC-------------------
Confidence 8999999999988887778899999987 5433222111122233332 445544
Q ss_pred ceEEEEeCCEEEEEE-CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee
Q 002234 793 PKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 871 (949)
Q Consensus 793 v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~ 871 (949)
++.+. .++.|..||. +++.... ....+...+..+++++++.+.++.... +.|..||. ++..
T Consensus 159 ----------l~v~~~~~~~i~~~~~-~g~~~~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 159 ----------LWFTENQNNSIGRITN-TGKLEEY-----PLPTNAAAPVGITSGNDGALWFVEIMG-NKIGRITT-TGEI 220 (300)
T ss_dssp ----------EEEEETTTTEEEEECT-TCCEEEE-----ECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCCE
T ss_pred ----------EEEEecCCCeEEEECC-CCcEEEe-----eCCCCCCCcceEEECCCCCEEEEccCC-CEEEEEcC-CCcE
Confidence 33343 3677888888 5554321 122334578899999888776665444 48999998 4444
Q ss_pred EEe-ec-CCCcEEEEEEcCC-EEEEEE-CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 872 VGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 872 ~~~-~~-~~~~v~~l~~s~d-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
... .. +...+.+++++++ .++.++ .++.|..||. +++............+.+++++++|++.++.. + .|..+|
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 332 22 4567899999987 566665 4689999998 45433221123345789999999998666554 4 666666
Q ss_pred C
Q 002234 948 L 948 (949)
Q Consensus 948 l 948 (949)
.
T Consensus 298 p 298 (300)
T 2qc5_A 298 L 298 (300)
T ss_dssp E
T ss_pred C
Confidence 3
No 255
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.20 E-value=3.2e-11 Score=126.91 Aligned_cols=243 Identities=16% Similarity=0.174 Sum_probs=174.6
Q ss_pred HhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhChhhHHHHHHhcCCChHHHHHhhhhH
Q 002234 170 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMME 249 (949)
Q Consensus 170 ~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~~~Aa~~l~~L~~~~~~~~~~~~~~ 249 (949)
+..++.+|.. .+++++..|+.+|.++...++.++..+. ..|.++.|+.+|+.+
T Consensus 4 i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~------------------------- 56 (252)
T 4hxt_A 4 VEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIV-DAGGVEVLVKLLTST------------------------- 56 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCS-------------------------
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHhCC-------------------------
Confidence 4446666655 4588899999999999766654555554 345555555555543
Q ss_pred HHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhh
Q 002234 250 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 329 (949)
Q Consensus 250 ~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~ 329 (949)
... -...+...|..|. ..+.+++..+...|+++.|+.+++.++.+.+..|+.+|.++..
T Consensus 57 ---------~~~-------v~~~a~~~L~~l~-----~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 57 ---------DSE-------VQKEAARALANIA-----SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 115 (252)
T ss_dssp ---------CHH-------HHHHHHHHHHHHT-----TSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred ---------CHH-------HHHHHHHHHHHHH-----cCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 210 0112222233221 1124666777788999999999999999999999999999988
Q ss_pred ccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccc
Q 002234 330 EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQC 409 (949)
Q Consensus 330 ~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~ 409 (949)
.+...+..+.+.+.+++++.++.+.+...+..|+.+|.+|...+ ....+.+.+.|.+ ..|+.+|+...++-+
T Consensus 116 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i---~~L~~ll~~~~~~v~ 187 (252)
T 4hxt_A 116 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-----DEAIKAIVDAGGV---EVLVKLLTSTDSEVQ 187 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHH---HHHHHHTTCSCHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCcCH---HHHHHHHCCCCHHHH
Confidence 88888999999999999999999999899999999999997642 2223345566666 558888988777778
Q ss_pred hhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccccC
Q 002234 410 PVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTS 469 (949)
Q Consensus 410 ~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 469 (949)
..++..|.++..-....+..+..+++++.|++.+++++ +.+|..|+.+|.||.......
T Consensus 188 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 188 KEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCCcc
Confidence 88888888885422222334446678999999998765 478999999999997754443
No 256
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=101.80 Aligned_cols=53 Identities=21% Similarity=0.540 Sum_probs=47.3
Q ss_pred CCCCCCcccCcCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dP-------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
...+++++.||||++.+.+| ++++|||+||+.||.+|+.. +..||.||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34578899999999999998 89999999999999999987 4599999998764
No 257
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.20 E-value=5.6e-09 Score=115.59 Aligned_cols=252 Identities=12% Similarity=0.125 Sum_probs=164.1
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCeeEEEEeecCCCce
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHCVQVHDIKDQI 756 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs----------~Dg~I~vWd~~~~~~~~~~~~~~~~~v 756 (949)
+++|.+.|..++ +.+.++.....+ . ++++|||++++.++ .+++|.+||..+++.............
T Consensus 58 ~~~V~ViD~~t~--~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAG--RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTT--EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCC--eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 689999999999 778887655555 4 99999999887775 367899999999863222111110000
Q ss_pred eeeeeccceEEEEeCCCEEEEEEe--cCeEEEecCCCC--ceEEE-------E--eCCEEEEEECCCcEEEEECCC-Cce
Q 002234 757 QNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKCLA-------L--VQGKVYCGCQDGAIQEIDLAT-GTF 822 (949)
Q Consensus 757 ~~l~~~~~~~~fsp~g~~l~~~~~--~g~i~~~~~~~~--v~~v~-------~--~~~~l~sgs~Dg~I~iwd~~~-~~~ 822 (949)
.....+..+.|+|||+++.+... ++.+.++|.... +..+. + ....+++.+.||.+.+.++.+ ++.
T Consensus 134 -~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 134 -LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp -CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred -ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 00112344559999999998875 578989986432 22221 1 134578899999999999987 554
Q ss_pred eeeecccccccCCCCCEE-EEEEe-CCceEEEEEECCCCEEEEEECCCCe--eEEeec-----------CCCcEEEEEEc
Q 002234 823 ATIQTGHRKLLGKANPVH-ALQVH-NGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP-----------TLSEVRAMVVS 887 (949)
Q Consensus 823 ~~~~~~~~~~~~h~~~V~-~l~~~-~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~~-----------~~~~v~~l~~s 887 (949)
..... ..+.....++. ...|. +++.++.. +.+| .|.+.|..+.. ....+. .......++++
T Consensus 213 ~~~~~--~~~~~~~~~~~~~~~~~~~dG~~~~v-s~~g-~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 213 EITHT--EVFHPEDEFLINHPAYSQKAGRLVWP-TYTG-KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp EEEEC--CCCSCTTSCBCSCCEEETTTTEEEEE-BTTS-EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred EEeec--ceeccccccccccceeEcCCCcEEEE-eCCC-EEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 32111 11111122332 23554 67765443 3344 99999997654 333221 01233346777
Q ss_pred CC--EEEEEEC----------CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCC
Q 002234 888 SE--LVYLGCK----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 888 ~d--~l~sgs~----------dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iWdl~ 949 (949)
++ .++.... .+.|.++|..+++.+.++..++ .+++++|+||++ +|+++. .+|.|.++|..
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 76 5555432 2579999999999999997554 689999999996 676654 58999999963
No 258
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=2.9e-08 Score=111.08 Aligned_cols=287 Identities=11% Similarity=0.082 Sum_probs=176.5
Q ss_pred cccEEEEecCCCCeEEEecCCc--eeeecCC---------CCce-EEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 639 EMVKVLSNGHDSSADFWNHREL--VHVDSSE---------NGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~--~~~~~~h---------~~~V-~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
++..++.++.++.|..||..+. ....... ...+ ..+....+.++.++.+|.|..+|..++ +.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG--~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG--TVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTC--CEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCC--CEEEEE
Confidence 4667777888889999998632 2222221 2223 445556678999999999999999999 566555
Q ss_pred cccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 707 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 707 ~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
............ .+..++.++.++.|..+|..+|+..-.... ..++........ ....+..+.++..++.+..
T Consensus 130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~---~~~~~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL--DMPSLSLRGESA---PTTAFGAAVVGGDNGRVSA 202 (376)
T ss_dssp ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC--CC-----CCCCC---CEEETTEEEECCTTTEEEE
T ss_pred eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC--CCCceeecCCCC---cEEECCEEEEEcCCCEEEE
Confidence 433322222222 245788889999999999999863322221 111110000000 0001223333333444443
Q ss_pred ecCCC-----------------------CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEE
Q 002234 787 LNSSK-----------------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 843 (949)
Q Consensus 787 ~~~~~-----------------------~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 843 (949)
++... ........++.+++++.++.+..+|..+++...... ......+.
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--------~~~~~~~~ 274 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--------LGSVNDFI 274 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--------CCCEEEEE
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--------CCCCCCce
Confidence 33210 001223346789999999999999999998775432 12344555
Q ss_pred EeCCceEEEEEECCCCEEEEEECCCCeeEEeec--CCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccc
Q 002234 844 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 921 (949)
Q Consensus 844 ~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~ 921 (949)
...+..++ ++.++ .+..+|..+++...... ....+.......+.+++++.+|.+++||..+++.+..........
T Consensus 275 ~~~~~l~~--~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 275 VDGNRIYL--VDQND-RVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF 351 (376)
T ss_dssp EETTEEEE--EETTC-CEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred EECCEEEE--EcCCC-eEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 55444443 34454 89999999999887765 223344455567799999999999999999999888775322222
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 922 VQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 922 I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
....... +..|+.++.||.|..|+
T Consensus 352 ~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 352 QTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred eeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 2223332 55788899999999987
No 259
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.19 E-value=3.4e-09 Score=113.34 Aligned_cols=232 Identities=11% Similarity=0.003 Sum_probs=157.8
Q ss_pred cccEEEEecCCCCeEEEecCC--ceeeecCCC-CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEeccc-CCC
Q 002234 639 EMVKVLSNGHDSSADFWNHRE--LVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKA 712 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~-~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H-~~~ 712 (949)
++..|++++.|+.|.+||.++ .+..+..+. ..+.++.++|+ +++ +.++.|..||. ++ +.+..+..+ ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G--~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG--RELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS--CEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC--CEEEEEcCCCCcc
Confidence 467899999999999999953 444455554 47899999997 555 45788999999 77 678888765 357
Q ss_pred EEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC
Q 002234 713 VTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~ 791 (949)
+.++.+.++|+.+++.+. ++.|..+|............. .+..-...+..+.+.++|+.
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~---~~~~~~~~~~~v~~~~~G~~----------------- 138 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET---GIERPHAQFRQINKNKKGNY----------------- 138 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC---SCSSGGGSCSCCEECTTSCE-----------------
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC---CCCcccccccCceECCCCCE-----------------
Confidence 889999999999999887 778888886433222222111 00000001112225555553
Q ss_pred CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee
Q 002234 792 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 871 (949)
Q Consensus 792 ~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~ 871 (949)
+++.+.++.|..||.. |+.+..+... ..+.++.+.+++.++++.+.++ .|..+|..+++.
T Consensus 139 -----------lv~~~~~~~v~~~d~~-G~~~w~~~~~-------~~~~~~~~~~~g~~~v~~~~~~-~v~~~d~~tG~~ 198 (276)
T 3no2_A 139 -----------LVPLFATSEVREIAPN-GQLLNSVKLS-------GTPFSSAFLDNGDCLVACGDAH-CFVQLNLESNRI 198 (276)
T ss_dssp -----------EEEETTTTEEEEECTT-SCEEEEEECS-------SCCCEEEECTTSCEEEECBTTS-EEEEECTTTCCE
T ss_pred -----------EEEecCCCEEEEECCC-CCEEEEEECC-------CCccceeEcCCCCEEEEeCCCC-eEEEEeCcCCcE
Confidence 6677788999999988 8887654421 3455677788888888776664 899999999999
Q ss_pred EEeecCC-------CcEEEEEEcCC-EEEEEECCC---------eEEEEEC-CCCcEEEEec
Q 002234 872 VGSLPTL-------SEVRAMVVSSE-LVYLGCKGG---------TVEIWDQ-KRQIRIETLQ 915 (949)
Q Consensus 872 ~~~~~~~-------~~v~~l~~s~d-~l~sgs~dg---------~I~vwd~-~~~~~~~~l~ 915 (949)
+.++... ..+..+...++ .+++++.+| ..+++.+ .+++.+.++.
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 9888621 23677777777 444444322 3356665 4777777774
No 260
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=2.2e-11 Score=101.67 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=47.6
Q ss_pred CCCCcccCcCccccc--cCceecC--CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIF--DDPVTLE--TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~--~dPv~~~--cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
...+++.||||++.+ .||++++ |||+||+.|+.+++..+...||.||+++....+.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 467899999999998 4667766 9999999999998876667899999999876653
No 261
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.18 E-value=4.4e-10 Score=137.13 Aligned_cols=235 Identities=7% Similarity=-0.012 Sum_probs=150.9
Q ss_pred ccccccccccEEE-----EecCCCCeEEEecCCceeeecCCCCce--EEEEEeCC--EEEEEeCCCc-------------
Q 002234 632 KYSPLAFEMVKVL-----SNGHDSSADFWNHRELVHVDSSENGKV--LSIACFRD--KIFSGHSDGT------------- 689 (949)
Q Consensus 632 ~~~~~~~~~~~l~-----s~s~dg~I~vWd~~~~~~~~~~h~~~V--~~l~~s~d--~lasgs~Dg~------------- 689 (949)
....+++||++|+ .|+.+.+|++||..+.......+...+ ..++|+|| .|+.++.|..
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3456778999998 455567899999985433212222223 68999997 8888888776
Q ss_pred EEEEecCCCce--eeeEEecccCCCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCeeEEEEeecCCCceeeeeecc
Q 002234 690 IKVWTGRGSIL--HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK----TARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 690 I~vWd~~t~~~--~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg----~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~ 763 (949)
|++|++.++.. .++.....|...+..+.|+|||++|+.++.++ .|.+||..+++...+... ...+....
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~~~--- 278 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG--VGAKYEVH--- 278 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC--SSCCEEEE---
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC--CCceEEEE---
Confidence 99999998742 24444455667899999999999998888766 677776655543333322 22222211
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE---CCCcEEEEECCCCceeeeeccccccc-CC-CCC
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC---QDGAIQEIDLATGTFATIQTGHRKLL-GK-ANP 838 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h-~~~ 838 (949)
+ ++|+ ++ +.+. .++.|.+||+.++..... ..+. .+ ...
T Consensus 279 ----~-~~g~-l~---------------------------~~s~~~~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~ 321 (695)
T 2bkl_A 279 ----A-WKDR-FY---------------------------VLTDEGAPRQRVFEVDPAKPARASW----KEIVPEDSSAS 321 (695)
T ss_dssp ----E-ETTE-EE---------------------------EEECTTCTTCEEEEEBTTBCSGGGC----EEEECCCSSCE
T ss_pred ----e-cCCc-EE---------------------------EEECCCCCCCEEEEEeCCCCCccCC----eEEecCCCCCe
Confidence 2 4444 32 2222 357899999987653100 1111 22 345
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECC-CCeeEEeec--CCCcEEEEEEcCC--EEE-EEE---CCCeEEEEECCCCc
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGSLP--TLSEVRAMVVSSE--LVY-LGC---KGGTVEIWDQKRQI 909 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~s~d--~l~-sgs---~dg~I~vwd~~~~~ 909 (949)
+..++++ ++.++++...|+ ..++|.+. ++.....+. ....+..+.++|+ .++ +.+ ..++|++||+.+++
T Consensus 322 l~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 322 LLSVSIV-GGHLSLEYLKDA-TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEE-TTEEEEEEEETT-EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEE-CCEEEEEEEECC-EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7888888 566777777776 77777654 455555555 2566777888886 333 332 24789999998876
Q ss_pred E
Q 002234 910 R 910 (949)
Q Consensus 910 ~ 910 (949)
.
T Consensus 400 ~ 400 (695)
T 2bkl_A 400 S 400 (695)
T ss_dssp E
T ss_pred E
Confidence 3
No 262
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.17 E-value=1.6e-10 Score=139.52 Aligned_cols=313 Identities=12% Similarity=0.037 Sum_probs=218.4
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCcc
Q 002234 123 ELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKS 202 (949)
Q Consensus 123 el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~ 202 (949)
-+..++..|..++..+.++.++..+..+.+..+ ....+.+.+++..++++|.. .++.+++.|+.+|.++...++.
T Consensus 57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~ 131 (644)
T 2z6h_A 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE----GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEG 131 (644)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH----HHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh----hHHHHHHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcch
Confidence 345556666655444556677777776654432 22235556778888888765 5789999999999999776555
Q ss_pred ceeeccccCCcHHHHHHHHhhCh----hhHHHHHHhcCC-ChHHH---HHhhhhHHHHHHHHhccccchhcccCchhhHH
Q 002234 203 VIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRP-STRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSV 274 (949)
Q Consensus 203 ~~~~i~~~~~~i~~l~~llk~g~----~~Aa~~l~~L~~-~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~ 274 (949)
.+..+. ..|.++.|+.+|+.+. ..|+.+|.+|.. .++++ ...+.++.|+++|+.+.... ...++.
T Consensus 132 ~~~~v~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~------~~~~a~ 204 (644)
T 2z6h_A 132 AKMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTS 204 (644)
T ss_dssp HHHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHH------HHHHHH
T ss_pred hHHHHH-HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHH------HHHHHH
Confidence 555554 6789999999999872 233447888875 55554 44456699999998864221 112233
Q ss_pred HHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhc
Q 002234 275 LLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA 354 (949)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~ 354 (949)
.+|..| +.+.+++..+++.|+++.|++.++.++.+.+..++.+|.++...... .....+.++.|+.++.+.
T Consensus 205 ~~L~nL------s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~ 275 (644)
T 2z6h_A 205 RVLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSD 275 (644)
T ss_dssp HHHHHH------TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCS
T ss_pred HHHHHH------hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCC
Confidence 334333 34567899999999999999999999999999999999988765432 122346788999999998
Q ss_pred CCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcC--CccchhHHHHHHhhhcccC---CCCCC
Q 002234 355 SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN--HDQCPVVAGLLLQLDLLAE---PRKMS 429 (949)
Q Consensus 355 ~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~--~~~~~~~a~~l~~l~~l~~---~~~~~ 429 (949)
+...|..|..+|.+|...+. +..+.+.+.|.+ ..|+.+|+... ++-+.-++..|.+|..-.. ..+..
T Consensus 276 d~~v~~~a~~aL~~L~~~~~-----~~~~~v~~~g~v---~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~ 347 (644)
T 2z6h_A 276 DINVVTCAAGILSNLTCNNY-----KNKMMVCQVGGI---EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCH-----HHHHHHHHcCCH---HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 88899999999999976432 223345566655 55888887754 3555667888888732111 11222
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 430 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 430 ~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
+...++++.|+..|++.+...++..|+.+|.||+.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 33457899999999988766788899999999975
No 263
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.16 E-value=3.4e-09 Score=112.41 Aligned_cols=228 Identities=7% Similarity=-0.022 Sum_probs=146.1
Q ss_pred ccccccEEE-EecCCCCeEEEecCCceeee--cCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec-ccC
Q 002234 636 LAFEMVKVL-SNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHT 710 (949)
Q Consensus 636 ~~~~~~~l~-s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~-~H~ 710 (949)
+..++..++ +.+.++.|.+|+..+..... ..+...+.+++++++ .++.+..++.|.+||..++. . ..+. ...
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~--~-~~~~~~~~ 107 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--Q-TVLPFDGL 107 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC--C-EECCCCSC
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCce--E-eeeecCCc
Confidence 334666666 54778899999986432222 234457889999986 44444448899999988762 2 2232 233
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
..+..++++++|+++++...++.|.+|+..+...... .......+.. +++.++|+.
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~-------i~~~~~g~l---------------- 163 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDG-------VAVDNSGNV---------------- 163 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-CCCSCCSCCC-------EEECTTCCE----------------
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-ccccCCCcee-------EEEeCCCCE----------------
Confidence 6789999999999888878889999997655421111 1111112222 335555542
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
+++...++.|.+||..++..... ...+...+..+++++++.+.++...++ .|.+||.....
T Consensus 164 ------------~v~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~~ 224 (270)
T 1rwi_B 164 ------------YVTDTDNNRVVKLEAESNNQVVL------PFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGSTT 224 (270)
T ss_dssp ------------EEEEGGGTEEEEECTTTCCEEEC------CCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCSC
T ss_pred ------------EEEECCCCEEEEEecCCCceEee------cccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCCc
Confidence 33334567899999877654321 122235688999999987666665554 89999987654
Q ss_pred eEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc
Q 002234 871 MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 871 ~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~ 909 (949)
...... +...+.+++++++ .+++...++.|++|+....+
T Consensus 225 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 433222 3367899999987 55666778999999987654
No 264
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.16 E-value=4.5e-09 Score=113.45 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=138.2
Q ss_pred eeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 702 LIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 702 ~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
.+..+..+.....+++|+|+|+ +++++..++.|..||..++ ...+. .....+..+. ++++|+.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~--~~~~~~~~l~-------~~~dg~l------ 82 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM--HPSHHQNGHC-------LNKQGHL------ 82 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE--SSCSSEEEEE-------ECTTCCE------
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE--CCCCCcceee-------ECCCCcE------
Confidence 4455556777789999999998 7888888999999999886 33322 2233344444 6666653
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEEC----
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL---- 856 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---- 856 (949)
+++...++.|.+||..+++......... ......++.+++++++.+.++.+.
T Consensus 83 ----------------------~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 83 ----------------------IACSHGLRRLERQREPGGEWESIADSFE--GKKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp ----------------------EEEETTTTEEEEECSTTCCEEEEECEET--TEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred ----------------------EEEecCCCeEEEEcCCCCcEEEEeeccC--CCCCCCCCCEEECCCCCEEEECCccccc
Confidence 3333346889999998887653322110 111235678999999998887321
Q ss_pred ------------CCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECC-CCcE---EEEecccc
Q 002234 857 ------------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIR---IETLQTGT 918 (949)
Q Consensus 857 ------------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~-~~~~---~~~l~~~h 918 (949)
.++.|..++.. ++......+......++|+|| .+++.+.++.|++||+. +++. ...+ ..+
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~ 216 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVE 216 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCS
T ss_pred cccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCC
Confidence 11256666655 554444446677899999998 56677778999999987 5554 3444 445
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 919 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+.+.+++++++|+++++. ++.|.+||.
T Consensus 217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 217 PGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6678899999999876665 788999985
No 265
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=5.6e-10 Score=124.10 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=130.1
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCC
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 791 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~ 791 (949)
.++.+++++...++++|+.|+ +++|++..... ... .. ... | .. .......+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~-~~~-~~-~~~------------~------------~~-~~~~~lp~ 89 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRD-HIT-SD-STP------------L------------TF-KWEKEIPD 89 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH-HHH-SS-SCC------------C------------CC-SEEEECTT
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhh-hhc-cc-ccc------------c------------cc-eEEeeCCC
Confidence 689999999999999999986 66798765310 000 00 000 0 00 00112233
Q ss_pred CceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee
Q 002234 792 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 871 (949)
Q Consensus 792 ~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~ 871 (949)
|..++|+++.|+++ .++.|++||+.+..... ....|..++.++.+.+.. ++.++.|| .|.+||+.++..
T Consensus 90 -V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~------~~~~~~~~v~~i~~~~p~--~av~~~dG-~L~v~dl~~~~~ 158 (388)
T 1xip_A 90 -VIFVCFHGDQVLVS-TRNALYSLDLEELSEFR------TVTSFEKPVFQLKNVNNT--LVILNSVN-DLSALDLRTKST 158 (388)
T ss_dssp -EEEEEEETTEEEEE-ESSEEEEEESSSTTCEE------EEEECSSCEEEEEECSSE--EEEEETTS-EEEEEETTTCCE
T ss_pred -eeEEEECCCEEEEE-cCCcEEEEEchhhhccC------ccceeecceeeEEecCCC--EEEEECCC-CEEEEEccCCcc
Confidence 55666644567777 88999999998776442 334456678888876543 66677786 999999998776
Q ss_pred EEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcE--EEEe------cc--ccccceeEEEEeCCCCEEEEEe
Q 002234 872 VGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR--IETL------QT--GTSGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 872 ~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~--~~~l------~~--~h~~~I~~l~~spdg~~L~sgs 938 (949)
.. ....|.+++|||+.++.|..||++++|+..+++. ..++ .. +|...|.++.|.+++.++++-+
T Consensus 159 ~~---~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 159 KQ---LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EE---EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cc---ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 53 3468999999999999999999999999988775 5556 11 3677899999999999888643
No 266
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.13 E-value=4.5e-11 Score=100.92 Aligned_cols=57 Identities=19% Similarity=0.479 Sum_probs=48.8
Q ss_pred CCCCCCcccCcCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dP---v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
.....+++.||||++.|.+| ++++|||.||+.||.+|+... ..||.||+.+....+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTA 68 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccC
Confidence 34567889999999999877 456999999999999999764 5999999999987764
No 267
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.12 E-value=3.6e-10 Score=133.17 Aligned_cols=316 Identities=11% Similarity=0.116 Sum_probs=221.9
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHh-cCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCc
Q 002234 123 ELKHAITSLCMSEILNESEMAVLQIERCWLEA-SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 201 (949)
Q Consensus 123 el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~ 201 (949)
.+..++..|.+. ..+.+..|+..++++.... +.+.. .+...+++..|+++|..+.++.++..|+.+|.++...+.
T Consensus 88 ~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~---~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 88 ELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPID---VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHH---HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHH---HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 355566667654 3455778888887775432 22222 244556777788888776588999999999999977665
Q ss_pred cceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCC-hHH---HHHhhhhHHHHHHHHhccccchhcccCchhhH
Q 002234 202 SVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRT---LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVS 273 (949)
Q Consensus 202 ~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~-~~~---~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~ 273 (949)
.....+. ..|.++.|+.+|+.+ ...|+.+|.+|... ++. +..-+.+|+|+.+|.... . .-...+
T Consensus 164 ~~~~~~~-~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~------~v~~~a 235 (530)
T 1wa5_B 164 AQTKVVV-DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-P------SLIRTA 235 (530)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-H------HHHHHH
T ss_pred HHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-H------HHHHHH
Confidence 5555555 578999999999987 56788899999654 332 334456799999998732 1 112334
Q ss_pred HHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHh
Q 002234 274 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 353 (949)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~ 353 (949)
+..|..|..+.+ .........|+++.|+.++..++.+.+..|+.+|.++..........+.+.+.++.|+.+|.+
T Consensus 236 ~~~L~~L~~~~~-----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 236 TWTLSNLCRGKK-----PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp HHHHHHHHCCSS-----SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHhCCCC-----CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC
Confidence 445555533221 223345567999999999999999999999999998887666667778888999999999998
Q ss_pred cCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHH
Q 002234 354 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYRE 433 (949)
Q Consensus 354 ~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~ 433 (949)
.+...+..|+.+|.++.... ....+.+-+.|.+ ..|+.+|+...++-+.-|+..|.++..-.......+..+
T Consensus 311 ~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l---~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~ 382 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVTGN-----DLQTQVVINAGVL---PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 382 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHH---HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHcCC-----HHHHHHHHHcchH---HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 88888999999999987542 1222334445544 568888888777777788888888843211111123345
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 434 EAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 434 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
++++.|+..|.+++ +.+|..|+.+|.+|.-
T Consensus 383 ~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 383 NLIPPLVKLLEVAE-YKTKKEACWAISNASS 412 (530)
T ss_dssp TCHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC-HHHHHHHHHHHHHHHh
Confidence 67899999998765 4678899999999853
No 268
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.12 E-value=7.8e-10 Score=127.18 Aligned_cols=318 Identities=13% Similarity=0.102 Sum_probs=220.6
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccc
Q 002234 124 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 203 (949)
Q Consensus 124 l~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~ 203 (949)
+..+++.+.+ +..+.++.|+..++++..... ++.+...+..++++..++++|....+..++..+..+|.++...+...
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEP-NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSS-SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3445666643 344557888888888754222 22222223333677878888877668899999999999997765555
Q ss_pred eeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCCh-HHH---HHhhhhHHHHHHHHhccccchhcccCchhhHHH
Q 002234 204 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST-RTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 275 (949)
Q Consensus 204 ~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~-~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~ 275 (949)
.+.+. ..|.++.|+.+|+.+ ...|+.+|.+|.... +.. ..-+.+++|+.++....+.. -...++.
T Consensus 100 ~~~~~-~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~------v~~~a~~ 172 (450)
T 2jdq_A 100 TRIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT------MTRNAVW 172 (450)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHH------HHHHHHH
T ss_pred HHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHH------HHHHHHH
Confidence 55555 578899999999987 567888999996543 332 33466799999998532221 1233455
Q ss_pred HHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcC
Q 002234 276 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 355 (949)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~ 355 (949)
.+..|....+ ......++ .++++.|+.+++.++.+.+..|+.+|.++.......+..+.+.+.+++++.++.+.+
T Consensus 173 ~L~~l~~~~~----~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 247 (450)
T 2jdq_A 173 ALSNLCRGKS----PPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247 (450)
T ss_dssp HHHHHHCCSS----SCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC
T ss_pred HHHHHhCCCC----CCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc
Confidence 5555543321 12223333 789999999999999999999999999888766666777888899999999999888
Q ss_pred CcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHH
Q 002234 356 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEA 435 (949)
Q Consensus 356 ~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~ 435 (949)
...+..|+..|.++.... ....+.+.+.|.+ ..|+.+|+...+.-+--++..|.++..-.+.....+..++.
T Consensus 248 ~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l---~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~ 319 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGD-----DIQTQVILNCSAL---QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319 (450)
T ss_dssp HHHHHHHHHHHHHHTTSC-----HHHHHHHHTTTHH---HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHhhCC-----hHHHHHHHHCccH---HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 888999999999987642 1223334445544 66888888776667777888888874311111122334578
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 436 IDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 436 ~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
++.|+..|.+++ +.+|..|+.+|.+|.-
T Consensus 320 l~~L~~~l~~~~-~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 320 FPALISILQTAE-FRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHc
Confidence 999999999764 5778899999999854
No 269
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.12 E-value=3.5e-10 Score=133.23 Aligned_cols=298 Identities=13% Similarity=0.095 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHH
Q 002234 140 SEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 219 (949)
Q Consensus 140 ~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~ 219 (949)
++.|+..+..+.... ......+...+++..|+.+|.. .+..+++.|+.+|.++.......+..+. ..|.++.|+.
T Consensus 135 ~~~A~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~-~~g~l~~Ll~ 209 (528)
T 4b8j_A 135 QFEAAWALTNIASGT---SENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVL-ANGALLPLLA 209 (528)
T ss_dssp HHHHHHHHHHHHTSC---HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHH-HCCcHHHHHH
Confidence 455555555554322 2222234455677777777765 5889999999999999765555565565 5689999999
Q ss_pred HHhhC-----hhhHHHHHHhcCC---ChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCccccccc
Q 002234 220 LFKKG-----LLEAVVLIDLLRP---STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSS 291 (949)
Q Consensus 220 llk~g-----~~~Aa~~l~~L~~---~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (949)
+|+.. ...|+.+|.+|.. .......-+.+|.|+.+|..+... -...++..|..|..+ ...
T Consensus 210 lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-------v~~~a~~aL~~l~~~-----~~~ 277 (528)
T 4b8j_A 210 QLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEE-------VLTDACWALSYLSDG-----TND 277 (528)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHH-------HHHHHHHHHHHHTSS-----CHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHcC-----CHH
Confidence 99543 5678889998853 333344455669999999765321 123344445545322 123
Q ss_pred chhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhc-CCcchhHHHHHHHHhh
Q 002234 292 IANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELV 370 (949)
Q Consensus 292 ~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~l~~l~ 370 (949)
....+...|+++.|+.++..++...+..|+.+|.++...+......+.+.+.++.|+.+|.+. +...+..|+.+|.++.
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999887777788888899999999999988 8888889999999997
Q ss_pred hccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCC-CCCccHHHHHHHHHHHhhcCCCh
Q 002234 371 KLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPR-KMSIYREEAIDTLISCLRNSDYP 449 (949)
Q Consensus 371 ~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~-~~~~~r~~~~~~l~~~l~~~~~~ 449 (949)
.- .....+.+.+.|.+ ..|+.+|+...++-+.-|+.+|.++..-.++. ...+...++++.|+..|.+++ +
T Consensus 358 ~~-----~~~~~~~~~~~~~i---~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d-~ 428 (528)
T 4b8j_A 358 AG-----NKDQIQAVINAGII---GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD-I 428 (528)
T ss_dssp TS-----CHHHHHHHHHTTCH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-H
T ss_pred CC-----CHHHHHHHHHCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC-H
Confidence 63 22333444555655 66999999998888889999999985542221 111224567999999998865 4
Q ss_pred HHHHHHHHHHHhcC
Q 002234 450 AAQLAAAKTIVSLQ 463 (949)
Q Consensus 450 ~~~~~~~~~l~~l~ 463 (949)
.++..|+.+|.+|.
T Consensus 429 ~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 429 RIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888999998874
No 270
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=1e-07 Score=102.26 Aligned_cols=234 Identities=9% Similarity=0.061 Sum_probs=154.5
Q ss_pred CCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 002234 667 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 667 h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
....+.++++.++ ..++...++.|.+||.. ++... ..+..+...+..+++.++|++.++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4567899999986 44555568999999988 63222 2233445679999999999988887778899999988 543
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCCCcee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFA 823 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~ 823 (949)
...........+..+. +.++|+ ++.+. .++.|..||.. ++..
T Consensus 95 ~~~~~~~~~~~~~~i~-------~~~~g~-----------------------------l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGIT-------EGLNGD-----------------------------IWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp EEEECSSTTCCEEEEE-------ECSTTC-----------------------------EEEEETTTTEEEEECTT-SCEE
T ss_pred EEecCCCCCCCCccce-------ECCCCC-----------------------------EEEEccCCCeEEEECCC-CCEE
Confidence 3222211122233333 444443 44443 36788888887 5543
Q ss_pred eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEe-ec-CCCcEEEEEEcCC-EEEEEE-CCCe
Q 002234 824 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGT 899 (949)
Q Consensus 824 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~d-~l~sgs-~dg~ 899 (949)
.. ........+..+++++++.+.++...+ +.|..||. +++.... .. ....+..++++++ .++.+. .++.
T Consensus 138 ~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 138 EY-----DLPNKGSYPAFITLGSDNALWFTENQN-NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp EE-----ECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred Ec-----cCCCCCCCceeEEECCCCCEEEEecCC-CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE
Confidence 21 122234578999999988866665444 48999998 5554432 22 3456889999987 555555 4568
Q ss_pred EEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 900 VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 900 I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
|.+||. +++........+...+.+++++++|++.++...++.|..||.
T Consensus 211 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 211 IGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 999998 555443322334557899999999997777666788988874
No 271
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=99.75 Aligned_cols=54 Identities=19% Similarity=0.480 Sum_probs=47.8
Q ss_pred CcccCcCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 002234 17 KDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 72 (949)
Q Consensus 17 ~~~~Cpic~~~~~dP-------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 72 (949)
+++.||||++.+.+| ++++|||+||+.||.+|+.. +..||.||+.+....+. ++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH-PI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEE-EC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcccee-ee
Confidence 478899999999998 88999999999999999987 45999999999987763 54
No 272
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.11 E-value=2.9e-10 Score=133.99 Aligned_cols=299 Identities=10% Similarity=0.082 Sum_probs=213.7
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHH
Q 002234 140 SEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 219 (949)
Q Consensus 140 ~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~ 219 (949)
++.|+..+..+... +......+...+++..|+.+|.. .+..+++.|+.+|.++.......+..+. ..|.++.|+.
T Consensus 148 ~~~A~~~L~~l~~~---~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~ 222 (530)
T 1wa5_B 148 QLEAAWALTNIASG---TSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVL-QCNAMEPILG 222 (530)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHH-HcCcHHHHHH
Confidence 44555444444432 22222234455667777777764 6889999999999999766555555555 5689999999
Q ss_pred HHhhC----hhhHHHHHHhcC----CChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCccccccc
Q 002234 220 LFKKG----LLEAVVLIDLLR----PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSS 291 (949)
Q Consensus 220 llk~g----~~~Aa~~l~~L~----~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 291 (949)
+|+.. ...|+.+|.+|. +.......-+.+|.|+.+|..+... -...++..|..|..+ ..+
T Consensus 223 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-------v~~~a~~~L~~L~~~-----~~~ 290 (530)
T 1wa5_B 223 LFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-------TLVDACWAISYLSDG-----PQE 290 (530)
T ss_dssp GGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH-------HHHHHHHHHHHHHSS-----CHH
T ss_pred HhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH-------HHHHHHHHHHHHhCC-----CHH
Confidence 99875 467788899885 3334445556679999999765321 123344455555322 234
Q ss_pred chhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhh
Q 002234 292 IANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK 371 (949)
Q Consensus 292 ~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~ 371 (949)
....++..|+++.|+++++.++.+.+..|+.+|.++...+......+.+.+.+++|+.+|.+.....|..|+.+|.++..
T Consensus 291 ~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 56677788999999999999999999999999999987777777777888999999999999888888899999999875
Q ss_pred ccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCC---CCCCccHHHHHHHHHHHhhcCCC
Q 002234 372 LNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEP---RKMSIYREEAIDTLISCLRNSDY 448 (949)
Q Consensus 372 ~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~---~~~~~~r~~~~~~l~~~l~~~~~ 448 (949)
.. .+..+.+-+.|.+ ..|+.+|+...++-+..|+..|.++..-..+ ....+...++++.|+..|.+. .
T Consensus 371 ~~-----~~~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~ 441 (530)
T 1wa5_B 371 GN-----TEQIQAVIDANLI---PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-D 441 (530)
T ss_dssp SC-----HHHHHHHHHTTCH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-C
T ss_pred CC-----HHHHHHHHHCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-C
Confidence 32 2223334455655 5688889888888888999999998554332 111233556899999999876 5
Q ss_pred hHHHHHHHHHHHhcCc
Q 002234 449 PAAQLAAAKTIVSLQG 464 (949)
Q Consensus 449 ~~~~~~~~~~l~~l~~ 464 (949)
+.++..|+.+|.+|..
T Consensus 442 ~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 442 NRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788899999988754
No 273
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.11 E-value=3.7e-10 Score=129.87 Aligned_cols=311 Identities=12% Similarity=0.065 Sum_probs=215.0
Q ss_pred HHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeec
Q 002234 128 ITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTL 207 (949)
Q Consensus 128 i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i 207 (949)
+..+...+...-+..++..+..+.....+ ....+...+++..++++|.. .++.+++.|+.+|.++...+...+..+
T Consensus 70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 70 VEFLKRKENCTLQFESAWVLTNIASGNSL---QTRIVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHSSCHH---HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCHH---HHHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444332333355565555555532221 11223445667777777665 588999999999999977665555555
Q ss_pred cccCCcHHHHHHHHhh-C----hhhHHHHHHhcCC----ChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHH
Q 002234 208 TRVESDVERIVALFKK-G----LLEAVVLIDLLRP----STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLG 278 (949)
Q Consensus 208 ~~~~~~i~~l~~llk~-g----~~~Aa~~l~~L~~----~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~ 278 (949)
. ..|.++.|+.+|+. . ...|+.+|.+|.. .......-+.+|+|+.++..+... -...+...+.
T Consensus 146 ~-~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~-------v~~~a~~~L~ 217 (450)
T 2jdq_A 146 L-DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD-------VLADACWALS 217 (450)
T ss_dssp H-HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHH-------HHHHHHHHHH
T ss_pred H-HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHH-------HHHHHHHHHH
Confidence 5 57899999999985 3 5677888988852 222222355669999999765321 1222344444
Q ss_pred HHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcc
Q 002234 279 QMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE 358 (949)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~ 358 (949)
.|... ..++...+...|+++.|+++++.++.+.+..|+.+|.++...+...+..+.+.+.++.++.++.+.+...
T Consensus 218 ~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 292 (450)
T 2jdq_A 218 YLSDG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI 292 (450)
T ss_dssp HHTSS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHH
T ss_pred HHHCC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHH
Confidence 44221 2345667778899999999999999999999999999998777766777888899999999999988888
Q ss_pred hhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCC-CCCccHHHHHH
Q 002234 359 RFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPR-KMSIYREEAID 437 (949)
Q Consensus 359 ~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~-~~~~~r~~~~~ 437 (949)
|..|+.+|.++..-. .+..+.+.+.|.+ ..|+.+|+...++-+..++..|.++..-..+. ...+..+++++
T Consensus 293 r~~a~~~L~~l~~~~-----~~~~~~~~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 293 KKEACWTISNITAGN-----RAQIQTVIDANIF---PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp HHHHHHHHHHHTTSC-----HHHHHHHHHTTHH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 999999999987532 2223334445544 66889999888888888999999985432221 11123556899
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 438 TLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 438 ~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
.|+..|..+ .++++..|+.+|.+|..
T Consensus 365 ~L~~ll~~~-~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 365 PLCDLLTVM-DSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 999999976 45788899999988753
No 274
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.11 E-value=9.2e-11 Score=123.68 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=167.0
Q ss_pred HhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhChhhHHHHHHhcCCChHHHHHhhhhH
Q 002234 170 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMME 249 (949)
Q Consensus 170 ~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~~~Aa~~l~~L~~~~~~~~~~~~~~ 249 (949)
++.+++.|. +.+.+++..|...|.++.+.+...++.+. ..|.++.|+.+|+.+
T Consensus 14 ~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-~~g~i~~L~~lL~~~------------------------- 66 (252)
T 4db8_A 14 LPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSP------------------------- 66 (252)
T ss_dssp HHHHHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHGGGCS-------------------------
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHH-HcCcHHHHHHHHcCC-------------------------
Confidence 344555554 46778899999999887665544444444 334445555544433
Q ss_pred HHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhh
Q 002234 250 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 329 (949)
Q Consensus 250 ~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~ 329 (949)
.. .-...++..|..|.. .+.+++..+...|+++.|+.+++.++.+.+..|+.+|.++..
T Consensus 67 ---------~~-------~v~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 67 ---------NE-------QILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (252)
T ss_dssp ---------CH-------HHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred ---------CH-------HHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 21 111223333333311 134667777888999999999999999999999999988866
Q ss_pred ccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccc
Q 002234 330 EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQC 409 (949)
Q Consensus 330 ~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~ 409 (949)
.+......+.+.+.+++++.+|.+.+...+..|+.+|.+|...+ .+..+.+.+.|.+ ..|+.+|+...++-+
T Consensus 126 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i---~~L~~ll~~~~~~v~ 197 (252)
T 4db8_A 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGAL---PALVQLLSSPNEQIL 197 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTCH---HHHHHGGGCSSHHHH
T ss_pred CCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCH---HHHHHHHCCCCHHHH
Confidence 65554478899999999999999998888999999999997643 2333445567766 558888888877777
Q ss_pred hhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 410 PVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 410 ~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
..++..|.++..-.+..+..+..+++++.|+..|++++. .+|..|+.+|.||+.
T Consensus 198 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS-HHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH-HHHHHHHHHHHHHhc
Confidence 888888888853222333344566789999999988754 778999999999874
No 275
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=119.43 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=140.8
Q ss_pred HhhhhhhhccCCch--hHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCC-ChHHH
Q 002234 170 INGFVEILFNSVDP--RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTL 242 (949)
Q Consensus 170 ~~~l~~~l~~s~~~--~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~-~~~~~ 242 (949)
+..+|++|..+ ++ +++..|...|.+|...++.+++.|. ..|+|++|+.+|+++ ..+|+.+|.+|+. .++|+
T Consensus 10 i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 44577777653 44 8888888999999777777787877 679999999999998 6788999999976 57777
Q ss_pred HHhh---hhHHHHHHHHhccccchhcccCchhh-HHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhh---cc---
Q 002234 243 IEMD---MMESLMTVIKKKEEDFLKMCLKPKSV-SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE---AE--- 312 (949)
Q Consensus 243 ~~~~---~~~~lv~~l~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~---~~--- 312 (949)
..|. .+|+||++|+...+... ..+++ ++.. ++...+++..|++ ++|++|++++- +|
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~----~e~a~~aL~n---------LS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~ 153 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLET----KKQITGLLWN---------LSSNDKLKNLMIT-EALLTLTENIIIPFSGWPE 153 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHH----HHHHHHHHHH---------HHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCG
T ss_pred HHHHHcCCHHHHHHHHccCCCHHH----HHHHHHHHHH---------HHcChhhHHHHHh-ccHHHHHHHHhccccCCcc
Confidence 6664 45999999986322211 12222 3332 3566778888886 57999999763 33
Q ss_pred ----------cHHHHHHHHHHHHHhhhccCCchhhHhhh-cCchhhHHHHHhc------CCcchhHHHHHHHHhhhc
Q 002234 313 ----------WAEERIAAVGILLRCMQEDGKCRNSIADK-AELAPVMESFMAA------SDGERFEIVCFLSELVKL 372 (949)
Q Consensus 313 ----------~~~~~~~a~~~l~~~~~~~~~~r~~~~~~-~~~~~l~~ll~~~------~~~~~~~~~~~l~~l~~~ 372 (949)
+.+.+++|+.+|.++.-.+...|..|.+. |.+++||++++.. +++..++|+..|.+|...
T Consensus 154 ~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 154 GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 44778999999998877777889999986 4579999999984 456678999999998653
No 276
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.10 E-value=4.9e-08 Score=105.49 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=144.3
Q ss_pred CCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 002234 667 ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 743 (949)
Q Consensus 667 h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~ 743 (949)
+..-.-+..|+++ ++++...++.|..||..++. . ..+ .+...+.+++++++|+++++ . ++.|.+||..+++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--V-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--E-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--E-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3344567888883 67777788999999999873 2 233 34578999999999995554 4 5679999999887
Q ss_pred eEEEEeecCC---CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC
Q 002234 744 IHCVQVHDIK---DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 820 (949)
Q Consensus 744 ~~~~~~~~~~---~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~ 820 (949)
...+...... ..++.+ ++.|+|+..+......... . ......+.|..+|.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~di-------~~d~dG~l~~~~~~~~~~~-~----------------~~~~~~~~l~~~d~~-g 139 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDG-------KVDPAGRYFAGTMAEETAP-A----------------VLERHQGALYSLFPD-H 139 (297)
T ss_dssp EEEEEECCTTCSSEEEEEE-------EECTTSCEEEEEEECCSBT-T----------------BCCTTCEEEEEECTT-S
T ss_pred EEEEEecCCCCCCCCCCCE-------EECCCCCEEEecCCccccc-c----------------cccCCCcEEEEEECC-C
Confidence 5444332211 123333 3777777432221110000 0 000011233334432 2
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC--CCCeeE-----Eeec-CCCcEEEEEEcCC-EE
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMV-----GSLP-TLSEVRAMVVSSE-LV 891 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~--~~~~~~-----~~~~-~~~~v~~l~~s~d-~l 891 (949)
..... ..+....+.++|+|++..+.......+.|..||+ .++... ..+. ....+..++++++ .+
T Consensus 140 ~~~~~-------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 140 HVKKY-------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp CEEEE-------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CEEEE-------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 22211 1122346789999998766544433359999987 455432 2222 2356889999887 44
Q ss_pred EEE-ECCCeEEEEECCCCcEEEEeccccccceeEEEEe-CCCCEEEEEeC
Q 002234 892 YLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGTS 939 (949)
Q Consensus 892 ~sg-s~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s-pdg~~L~sgs~ 939 (949)
+++ ..++.|.+||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 444 457789999999999988885 455679999998 89887765553
No 277
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.10 E-value=5.4e-10 Score=131.53 Aligned_cols=311 Identities=13% Similarity=0.048 Sum_probs=215.4
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccc
Q 002234 124 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 203 (949)
Q Consensus 124 l~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~ 203 (949)
+...+..|..++..+.++.++..+..+.+..+ ....+...+++..++++|.. .++.+++.++.+|.++...++..
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHRE----GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH----HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch----hHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcch
Confidence 44445555544333445666666666654322 22235556778878887765 57899999999999997765555
Q ss_pred eeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCC-ChHHH---HHhhhhHHHHHHHHhccccchhcccCchhhHHH
Q 002234 204 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 275 (949)
Q Consensus 204 ~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~-~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~ 275 (949)
+..+. ..|.++.|+.+|+.+ ...|+.+|.+|.. .+++. ...+.++.|+++++.+.... ...++..
T Consensus 136 ~~~i~-~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~------~~~~a~~ 208 (529)
T 1jdh_A 136 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 208 (529)
T ss_dssp HHHHH-HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH------HHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH------HHHHHHH
Confidence 55444 578999999999987 3344557888865 34443 44456799999999874321 1223344
Q ss_pred HHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcC
Q 002234 276 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 355 (949)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~ 355 (949)
++..| +.+.+++..++..|+++.|++.++.++.+.+..++.+|.++....... ....+.+++|+.++.+.+
T Consensus 209 ~L~~l------~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 209 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp HHHHH------TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSC
T ss_pred HHHHH------hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCC
Confidence 44433 345678889999999999999999999999999999998887654321 223467899999999888
Q ss_pred CcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcC--CccchhHHHHHHhhhcccCCC----CCC
Q 002234 356 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN--HDQCPVVAGLLLQLDLLAEPR----KMS 429 (949)
Q Consensus 356 ~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~--~~~~~~~a~~l~~l~~l~~~~----~~~ 429 (949)
...+..|..+|.+|...+ .+..+.+.+.|++ ..|+.+|+... ++-+.-++..|.++.. ..+. +..
T Consensus 280 ~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~v---~~L~~ll~~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~ 350 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCNN-----YKNKMMVCQVGGI---EALVRTVLRAGDREDITEPAICALRHLTS-RHQEAEMAQNA 350 (529)
T ss_dssp HHHHHHHHHHHHHHTTTC-----HHHHHHHHHTTHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHTS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCh---HHHHHHHHccCCHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 899999999999996642 2334446667766 55788887644 3445567778877732 2121 223
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 430 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 430 ~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
+...++++.|+..|+++....++..|+.+|.|++.
T Consensus 351 i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 44557899999999988766788899999999874
No 278
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.09 E-value=2.1e-08 Score=112.95 Aligned_cols=252 Identities=10% Similarity=0.093 Sum_probs=163.0
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCeeEEEEeecCCCcee
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHCVQVHDIKDQIQ 757 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs----------~Dg~I~vWd~~~~~~~~~~~~~~~~~v~ 757 (949)
++|.++|..++ +.+.++.--..+ .+.++|||++++.+. .++.|.++|..+++.............
T Consensus 99 ~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~- 173 (426)
T 3c75_H 99 TQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF- 173 (426)
T ss_dssp EEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC-
T ss_pred CeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc-
Confidence 68999999999 778877655555 899999999888776 467899999999863221111100000
Q ss_pred eeeeccceEEEEeCCCEEEEEEe--cCeEEEecCCCC--ceEEEE---------eCCEEEEEECCCcEEEEECCCCceee
Q 002234 758 NLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKCLAL---------VQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 758 ~l~~~~~~~~fsp~g~~l~~~~~--~g~i~~~~~~~~--v~~v~~---------~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
.....+..+.|+|||+++.+... ++.+.++|.... +..+.. ....+++.+.||.+.+.+..+++...
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 00012334459999999999875 478888886432 222222 12446778899999999996665542
Q ss_pred eecccccccCCCCCE-EEEEEeCCceEEEEEECCCCEEEEEECCCCeeE--EeecC-----------CCcEEEEEEcCC-
Q 002234 825 IQTGHRKLLGKANPV-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV--GSLPT-----------LSEVRAMVVSSE- 889 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l~~s~d- 889 (949)
... ..+.....++ ..+.+.+++..++..+..+ .+.+.|....... ..+.. ......+++++|
T Consensus 254 ~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g-~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 254 TNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTG-KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp EEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTS-EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred Eee--eeeccCCCceeeEeeecCCCCEEEEEeCCC-cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 211 1111111221 1245676665555445554 8999998654422 11110 111223678887
Q ss_pred -EEEEEEC----------CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCC
Q 002234 890 -LVYLGCK----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 890 -~l~sgs~----------dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iWdl~ 949 (949)
.+++... ++.|.++|..+.+.+.++..+. ..+.+.|+|||+ +++++. .++.|.++|+.
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 5555432 3579999999999999996443 589999999999 888888 59999999974
No 279
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.08 E-value=6.5e-10 Score=136.64 Aligned_cols=276 Identities=14% Similarity=0.063 Sum_probs=196.2
Q ss_pred hchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCC-C
Q 002234 164 LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-S 238 (949)
Q Consensus 164 l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~-~ 238 (949)
+...+++..++++|.. .++.+++.|+.+|.++.......++.+. ..|.++.|+.+|+.+ ...|+.+|..|.. .
T Consensus 230 i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~v~-~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGS-PVDSVLFHAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTHHHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCChhhHHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 3445667777777765 4789999999999999766555554444 678999999999886 3345567777764 3
Q ss_pred hHHHH---HhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHH
Q 002234 239 TRTLI---EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAE 315 (949)
Q Consensus 239 ~~~~~---~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~ 315 (949)
++++. ..+.++.|+.+|+.+.... ...++..++..| +....++..++..|+++.|+..+..++.+
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~------~~~~a~~aL~~L------s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~ 375 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEK------LLWTTSRVLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQR 375 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHH------HHHHHHHHHHHH------HTSTTHHHHHHHTTHHHHHGGGTTCSCHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHH------HHHHHHHHHHHh------hcChHHHHHHHHhchHHHHHHHHcCCchH
Confidence 44443 3455699999998764321 112233334333 33457888999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHH
Q 002234 316 ERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMH 395 (949)
Q Consensus 316 ~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~ 395 (949)
.+..|+.+|.++...... .....+.+++|+.+|.+.+...|..|+.+|.+|...+ .+..+.+.+.|++ .
T Consensus 376 ~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~-----~~~~~~i~~~g~i---~ 444 (780)
T 2z6g_A 376 LVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-----YKNKMMVCQVGGI---E 444 (780)
T ss_dssp HHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTHH---H
T ss_pred HHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-----HHHHHHHHHCCCH---H
Confidence 999999999888765533 2223557889999999999999999999999997653 2233445666766 5
Q ss_pred HHHHHHhhcC-C-ccchhHHHHHHhhhcccCCC---CCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 396 TLLVYLQTAN-H-DQCPVVAGLLLQLDLLAEPR---KMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 396 ~l~~~l~~~~-~-~~~~~~a~~l~~l~~l~~~~---~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
.|+.+|+... . +-+..++..|.++..-.... +..+..+++++.|+..|.+++...++..|+.+|.||+.
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 5888887643 2 56667888888873211110 11333456799999999998876888899999999964
No 280
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.06 E-value=8.8e-08 Score=108.53 Aligned_cols=235 Identities=12% Similarity=0.086 Sum_probs=151.2
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCee
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEI 744 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg--~I~vWd~~~~~~ 744 (949)
.....++|+++ ++++...++.|++||..++ ........ ..... ++|+++++.|+++..++ .|.+|+..++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 46889999986 5666666799999999988 33333332 23334 99999999999998876 788888776532
Q ss_pred -EEEEee-c-CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc
Q 002234 745 -HCVQVH-D-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 821 (949)
Q Consensus 745 -~~~~~~-~-~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~ 821 (949)
...... . ....+.+++ ++|++ +.|+++..++.|..||..++.
T Consensus 207 ~~~~g~~~~~~~~~p~~ia-------v~p~~----------------------------g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVA-------LDETE----------------------------EWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp EEEEEECCTTSCSCCCBCE-------ECTTS----------------------------SEEEEECTTCEEEEEETTTCC
T ss_pred eEEeeeccchhcCCcEEEE-------EeCCC----------------------------CeEEEEECCCcEEEEECCCCC
Confidence 111000 1 112223333 45522 246666677889999998776
Q ss_pred eeeeecccccccCCCCC--EEEEEEeC-CceEEEEEECCCCEEEEEECCCCeeEEeec-C---------------CCcEE
Q 002234 822 FATIQTGHRKLLGKANP--VHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T---------------LSEVR 882 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~--V~~l~~~~-~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~---------------~~~v~ 882 (949)
...... . ...++... ...++|+| ++.+.++-..+ +.|+.|+.... ...+. + -....
T Consensus 252 ~~~~~~-~-~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 252 VTLIKQ-L-ELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp EEEEEE-C-CCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred EEEEec-c-cccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 432210 0 01112222 23899999 46655555444 59999997643 22221 1 13488
Q ss_pred EEEEcCC-EEE-EEE-CCCeEEEEECCCCcEEEEecccc---------------ccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 883 AMVVSSE-LVY-LGC-KGGTVEIWDQKRQIRIETLQTGT---------------SGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 883 ~l~~s~d-~l~-sgs-~dg~I~vwd~~~~~~~~~l~~~h---------------~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
.++++++ .++ +-+ .++.|+.||..++.. .++ .++ -.....++++|+|.++++-..+++|+
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~-~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV-AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE-EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE-eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 9999988 344 445 678999999878764 333 133 23588999999998888888899999
Q ss_pred EEeCC
Q 002234 945 AWGLS 949 (949)
Q Consensus 945 iWdl~ 949 (949)
.++++
T Consensus 405 ~i~~e 409 (409)
T 3hrp_A 405 KYAVE 409 (409)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88763
No 281
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.06 E-value=1.4e-07 Score=103.33 Aligned_cols=223 Identities=9% Similarity=0.000 Sum_probs=138.9
Q ss_pred eEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002234 671 VLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 747 (949)
Q Consensus 671 V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~ 747 (949)
..+..|+|+ +++++..++.|..||..++. . ..+. +...+.++.|+++|+++++. .+ .|.+||..+++...+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR--K-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--E-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--E-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 456789884 67777788999999999873 2 2232 35679999999999877754 44 499999988864433
Q ss_pred EeecC---CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 748 QVHDI---KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 748 ~~~~~---~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
..... ...+..+. ++|+|+..+....+.. ....+.|..+| +++...
T Consensus 125 ~~~~~~~~~~~~~~i~-------~d~~G~l~v~~~~~~~----------------------~~~~~~l~~~~--~g~~~~ 173 (326)
T 2ghs_A 125 AELESDLPGNRSNDGR-------MHPSGALWIGTMGRKA----------------------ETGAGSIYHVA--KGKVTK 173 (326)
T ss_dssp ECSSTTCTTEEEEEEE-------ECTTSCEEEEEEETTC----------------------CTTCEEEEEEE--TTEEEE
T ss_pred eeCCCCCCCCCCCCEE-------ECCCCCEEEEeCCCcC----------------------CCCceEEEEEe--CCcEEE
Confidence 32211 11233433 7777764221111000 00123445555 343321
Q ss_pred eecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC--CC-e-----eEEeec-CCCcEEEEEEcCC-EEEEE
Q 002234 825 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS--NY-N-----MVGSLP-TLSEVRAMVVSSE-LVYLG 894 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~--~~-~-----~~~~~~-~~~~v~~l~~s~d-~l~sg 894 (949)
.. .+....+.++|++++..+..+...++.|.+||+. ++ . ....+. ....+..++++++ .++++
T Consensus 174 ~~-------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 174 LF-------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA 246 (326)
T ss_dssp EE-------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred ee-------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 11 1123567899999997665554433599999986 55 3 222232 2456788999887 45544
Q ss_pred E-CCCeEEEEECCCCcEEEEeccccccceeEEEEe-CCCCEEEEEeC
Q 002234 895 C-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGTS 939 (949)
Q Consensus 895 s-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s-pdg~~L~sgs~ 939 (949)
. .++.|.+||. +++.+..+. .+...+++++|+ ||++.|+.++.
T Consensus 247 ~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 247 RWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEec
Confidence 4 5688999998 677777774 455579999998 89887765543
No 282
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.05 E-value=9.5e-10 Score=115.83 Aligned_cols=228 Identities=11% Similarity=0.179 Sum_probs=174.0
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccce
Q 002234 125 KHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 204 (949)
Q Consensus 125 ~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~ 204 (949)
...+..|.+.+ .+.+..|+..++.+.....++... +...+++..++.+|..+ ++.+++.++.+|.++...++.++
T Consensus 15 ~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~---~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 15 PQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQA---VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp HHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHH---HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHH---HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHH
Confidence 33455555443 355778888887665553333322 55667778788888764 58999999999999977677777
Q ss_pred eeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHH----HHhhhhHHHHHHHHhccccchhcccCchhhHHHH
Q 002234 205 HTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL----IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLL 276 (949)
Q Consensus 205 ~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~----~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~ 276 (949)
..+. ..|.++.|+.+|+.+ ...|+.+|.+|...+++. ...+.+|.|+.+|..++.. -...++..
T Consensus 90 ~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-------v~~~a~~~ 161 (252)
T 4db8_A 90 QAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-------ILQEALWA 161 (252)
T ss_dssp HHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH-------HHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH-------HHHHHHHH
Confidence 7777 678999999999987 677888999998765543 4445669999999775321 12345555
Q ss_pred HHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCC
Q 002234 277 LGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD 356 (949)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~ 356 (949)
|..|... +.++...++..|+++.|+++++.++.+.+..|+.+|.+++..+...+..+.+.+.+++++.++++++.
T Consensus 162 L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 162 LSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHTTS-----CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS
T ss_pred HHHHHcC-----ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH
Confidence 5555322 24566778889999999999999999999999999999987777788888999999999999999999
Q ss_pred cchhHHHHHHHHhh
Q 002234 357 GERFEIVCFLSELV 370 (949)
Q Consensus 357 ~~~~~~~~~l~~l~ 370 (949)
..|..|..+|.+|.
T Consensus 237 ~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 237 KIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998888874
No 283
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=4e-11 Score=93.70 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 66 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 66 (949)
.+++.||||++.|.+|++++|||+||+.||.+| ...||.||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 578899999999999999999999999999873 45899999987743
No 284
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.04 E-value=3.9e-10 Score=121.02 Aligned_cols=179 Identities=16% Similarity=0.105 Sum_probs=142.7
Q ss_pred hhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHH-hhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHH
Q 002234 271 SVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVME 349 (949)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~-~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ 349 (949)
..|+..|..++. +..|+..+.+.|++++|+. +|++++.+.|..|+.+|.++.+.+..++..+.+.++++||+.
T Consensus 58 ~~Al~~L~~lv~------~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 58 EGALELLADLCE------NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHT------SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHh------ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 345666665533 3357788899999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhc-CCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCC
Q 002234 350 SFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM 428 (949)
Q Consensus 350 ll~~~-~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~ 428 (949)
||.+. +...|..|+.+|.++..-+.. ..+.+.+.|++ ..|+.+|+...++-+.-|+.+|..|..-....+.
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~-----~~~~~~~~ggi---~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEA-----GLLQFLRLDGF---SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTHH---HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcH-----HHHHHHHCCCH---HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 99975 567788899999998764322 22234445666 5689999998888888899999988443333344
Q ss_pred CccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 429 SIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 429 ~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
-+..+++++.|+..|++++. ++|+.|+++|.+|..
T Consensus 204 ~vv~~g~i~~Lv~LL~~~d~-~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 204 TLCSMGMVQQLVALVRTEHS-PFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHTTHHHHHHHHHTSCCS-THHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcCCCh-hHHHHHHHHHHHHHh
Confidence 55577899999999998864 679999999999854
No 285
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.04 E-value=1.8e-09 Score=113.31 Aligned_cols=232 Identities=13% Similarity=0.138 Sum_probs=177.5
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccc
Q 002234 124 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 203 (949)
Q Consensus 124 l~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~ 203 (949)
+...+..|.+.+ .+.+..++..+..+.....+++ ..+.+.+++..++.+|.. .+..+++.+..+|.++...++.+
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAI---KAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHH---HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHH---HHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHH
Confidence 444556665544 4446777777777765543332 336667778888887766 46899999999999997766777
Q ss_pred eeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcC-CChHHHHHh---hhhHHHHHHHHhccccchhcccCchhhHHH
Q 002234 204 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLR-PSTRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 275 (949)
Q Consensus 204 ~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~-~~~~~~~~~---~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~ 275 (949)
+..+. ..|.++.|+.+|+.+ ...|+.+|.+|. ..+++...+ +.++.|+.+++.+... -...++.
T Consensus 79 ~~~~~-~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-------~~~~a~~ 150 (252)
T 4hxt_A 79 IKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-------VQKEAAR 150 (252)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH-------HHHHHHH
T ss_pred HHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH-------HHHHHHH
Confidence 77776 678899999999987 677888999998 455544333 5669999999875422 1334555
Q ss_pred HHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcC
Q 002234 276 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 355 (949)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~ 355 (949)
.|..|... +..+...+...|+++.|+++++.++.+.+..|+.+|.+++..+...+..+.+.+.++.+++++++.+
T Consensus 151 ~L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 151 ALANIASG-----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHcC-----CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 56555322 3455678888999999999999999999999999999998878888889999999999999999999
Q ss_pred CcchhHHHHHHHHhhhcc
Q 002234 356 DGERFEIVCFLSELVKLN 373 (949)
Q Consensus 356 ~~~~~~~~~~l~~l~~~~ 373 (949)
...|..|+.+|.+|....
T Consensus 226 ~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 226 SEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999997754
No 286
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=2.8e-08 Score=120.06 Aligned_cols=274 Identities=11% Similarity=0.058 Sum_probs=167.1
Q ss_pred ccccccEEEEecCCCCeEEEecCC--ceeeecCC-C----CceE-EEEEeCCEEEEEeC------CCcEEEEecCCCcee
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSE-N----GKVL-SIACFRDKIFSGHS------DGTIKVWTGRGSILH 701 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~--~~~~~~~h-~----~~V~-~l~~s~d~lasgs~------Dg~I~vWd~~t~~~~ 701 (949)
...++..++.++.|+.+..+|..+ .+.....+ . ..+. ......+.++.++. +|.|+.||..+| +
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG--~ 201 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG--E 201 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--C
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCC--c
Confidence 344677888889999999999864 22222222 1 1111 12233466666654 799999999999 5
Q ss_pred eeEEecccCC--------------------------------CEEEEEEecCCCEEEEEeCCC-----------------
Q 002234 702 LIQQIREHTK--------------------------------AVTGLAILQSGEMLYSGSLDK----------------- 732 (949)
Q Consensus 702 ~i~~l~~H~~--------------------------------~V~~v~fspdg~~L~Sgs~Dg----------------- 732 (949)
.+..+..... ....++++|++..++.++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 6665543211 113578899989999887764
Q ss_pred --cEEEEECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC
Q 002234 733 --TARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 809 (949)
Q Consensus 733 --~I~vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D 809 (949)
+|..+|..+|+..-.... .+...-......+.......+|+.. +.++.++.+
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~-------------------------~~l~~~~~~ 336 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR-------------------------KVILHAPKN 336 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE-------------------------EEEEECCTT
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe-------------------------eEEEEECCC
Confidence 589999999863322211 1111100100001111111233100 137788899
Q ss_pred CcEEEEECCCCceeeeecccc-c----ccCCCCCE------------------------EEEEEeCCceEEEEEECC---
Q 002234 810 GAIQEIDLATGTFATIQTGHR-K----LLGKANPV------------------------HALQVHNGLVYTASTSLD--- 857 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~-~----~~~h~~~V------------------------~~l~~~~~~~~l~s~s~D--- 857 (949)
|.++++|..+|+.+....... . +.....++ ..++++|+...+.....+
T Consensus 337 G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~ 416 (677)
T 1kb0_A 337 GFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPV 416 (677)
T ss_dssp SEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCC
T ss_pred CEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcce
Confidence 999999999998875432110 0 00000011 256788765555443221
Q ss_pred ---------------------------------------CCEEEEEECCCCeeEEeecCCCcEEEEEE--cCCEEEEEEC
Q 002234 858 ---------------------------------------GAAVKMWSTSNYNMVGSLPTLSEVRAMVV--SSELVYLGCK 896 (949)
Q Consensus 858 ---------------------------------------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~--s~d~l~sgs~ 896 (949)
.+.|..||+.+++.+..+++...+....+ ..+.++.++.
T Consensus 417 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~ 496 (677)
T 1kb0_A 417 NLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA 496 (677)
T ss_dssp EEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT
T ss_pred eeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC
Confidence 13899999999999988885544443333 3458888999
Q ss_pred CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEE
Q 002234 897 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 936 (949)
Q Consensus 897 dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~s 936 (949)
||.+++||..+++.+.++..++...-.-+.|.++|+.++.
T Consensus 497 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999999999997666555566778888875543
No 287
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=1.9e-08 Score=122.48 Aligned_cols=241 Identities=13% Similarity=0.133 Sum_probs=147.1
Q ss_pred CCCCceEEEEEeCC--EEE-EE----eCCCcEEEEecCCCceeeeEE-ecccCCCEEEEEEecCCCEEEEEeCCCc----
Q 002234 666 SENGKVLSIACFRD--KIF-SG----HSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKT---- 733 (949)
Q Consensus 666 ~h~~~V~~l~~s~d--~la-sg----s~Dg~I~vWd~~t~~~~~i~~-l~~H~~~V~~v~fspdg~~L~Sgs~Dg~---- 733 (949)
+|...+..++|||| +++ +. +.+.+|++||+.+++ .+.. +.+. ....++|+ ||+.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCccccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 46678999999997 555 32 333579999999994 3322 2211 13567899 9999999988754
Q ss_pred ---------EEEEECCCCeeEEEEeec----CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 734 ---------ARVWSIGNEEIHCVQVHD----IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 734 ---------I~vWd~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
|++|++.++......... +...+.++. |+|||+++++....+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~-------~SpDg~~l~~~~~~~------------------ 255 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGAT-------VTEDDRFLLISAANS------------------ 255 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEE-------ECTTSCEEEEEEESS------------------
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEE-------EcCCCCEEEEEEccC------------------
Confidence 999999886421122221 122344444 899999864432211
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC--CEEEEEECCCCee---EEee
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNM---VGSL 875 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg--~~I~iwd~~~~~~---~~~~ 875 (949)
+.++.|.++|+.++.... ..+..+.........++++.+++.+..++ ..|..||+.++.. ....
T Consensus 256 ------~~~~~i~~~d~~~~~~~~-----~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 256 ------TSGNRLYVKDLSQENAPL-----LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp ------SSCCEEEEEETTSTTCCC-----EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred ------CCCcEEEEEECCCCCCce-----EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 123578999988764111 22333444454543344455555554432 4899999987654 2233
Q ss_pred cCCCcEEEEEEcCCEEEEEE-CCC--eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC----CcEEEEeC
Q 002234 876 PTLSEVRAMVVSSELVYLGC-KGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD----GRIQAWGL 948 (949)
Q Consensus 876 ~~~~~v~~l~~s~d~l~sgs-~dg--~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D----g~I~iWdl 948 (949)
.+...+..+....+.++... .++ .|++||+.++ ....+...+.+.+..+.++|+++.++....+ ++|..||+
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 34444434444555665554 454 6899998754 4455543455678888889998877655444 78888886
No 288
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=6.9e-11 Score=97.45 Aligned_cols=54 Identities=20% Similarity=0.481 Sum_probs=47.5
Q ss_pred CCCCCCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 67 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 67 (949)
...+.+++.||||++.+.+ ++++|||+||+.||.+|+.. ...||.||+.+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 3457789999999999999 99999999999999999885 569999999987554
No 289
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.02 E-value=2.6e-08 Score=112.22 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=167.5
Q ss_pred CCeEEEecCCc--eeeecCCCCceEEEEEeCC--EEEEEe----------CCCcEEEEecCCCceeeeEEeccc------
Q 002234 650 SSADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGSILHLIQQIREH------ 709 (949)
Q Consensus 650 g~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d--~lasgs----------~Dg~I~vWd~~t~~~~~i~~l~~H------ 709 (949)
+.|.++|..+. +........+ .+.++|| +++.+. .++.|.++|..++ +.+.++.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccc
Confidence 68999998742 2222222334 8999997 444443 4779999999998 566665321
Q ss_pred -CCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEeecCCCceeeee--eccceEEEEeCCCEEEEEEecCeE
Q 002234 710 -TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLA--VSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 710 -~~~V~~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
...-..+.|+|||++++.+.. +++|.+.|+.+++.. ........+ .+. -....+.++++|+.+.+...++++
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv--~~I~v~g~~-~~~p~g~~~~v~~~~dG~~~~V~~~~~~v 251 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD--RMLDVPDCY-HIFPASPTVFYMNCRDGSLARVDFADGET 251 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEECCSEE-EEEEEETTEEEEEETTSSEEEEECCTTCC
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE--EEEEcCCce-eeccCCCcEEEEEcCCCCEEEEECCCCcE
Confidence 123456899999999998874 588999999998632 222211110 010 001124477788777666655544
Q ss_pred E-----EecCCCCc--eEEEEe--CCEEEEEECCCcEEEEECCCCceeeeeccc----cc-ccC-CCCCEEEEEEeCCce
Q 002234 785 K-----LLNSSKYP--KCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGH----RK-LLG-KANPVHALQVHNGLV 849 (949)
Q Consensus 785 ~-----~~~~~~~v--~~v~~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~----~~-~~~-h~~~V~~l~~~~~~~ 849 (949)
. .++..... ..+.+. ++.++..+..+.+.+.|..++......... .. ..+ .......+++++++.
T Consensus 252 ~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 252 KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 3 22322211 122333 356666678899999998765532111000 00 000 001122368888766
Q ss_pred EEEEEECC---------CCEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEE-CCCeEEEEECCCCcEEEEe-c
Q 002234 850 YTASTSLD---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKRQIRIETL-Q 915 (949)
Q Consensus 850 ~l~s~s~D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs-~dg~I~vwd~~~~~~~~~l-~ 915 (949)
.+.....+ ++.|.+.|..+++.+.++........+.|+|| .+++.. .++.|.|+|..+++.+.++ .
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~ 411 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQ 411 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecC
Confidence 54443211 13899999999999999986667899999987 577777 5899999999999999987 3
Q ss_pred cccccceeEEEEeCC
Q 002234 916 TGTSGKVQCMALDDN 930 (949)
Q Consensus 916 ~~h~~~I~~l~~spd 930 (949)
.++. ..+..+||
T Consensus 412 vG~~---P~~i~~~~ 423 (426)
T 3c75_H 412 LGRG---PQIITTHD 423 (426)
T ss_dssp CSSS---CCEEECCC
T ss_pred CCCC---CcEEEcCC
Confidence 3432 22445554
No 290
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.6e-10 Score=94.23 Aligned_cols=55 Identities=15% Similarity=0.361 Sum_probs=47.1
Q ss_pred CCCCCCcccCcCccccccCceec---CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTL---ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 67 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~---~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 67 (949)
..+..++..||||++.|.+|..+ +|||.||+.||.+|+.... .||.||+.+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccccc
Confidence 34677899999999999988765 9999999999999998754 9999999887544
No 291
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.01 E-value=1.1e-08 Score=125.83 Aligned_cols=237 Identities=11% Similarity=0.034 Sum_probs=147.4
Q ss_pred ccccccccccEEEEecCC-----CCeEEEecCCceeee-cCCCCceEEEEEeCC-EEEEEeCCCc--------------E
Q 002234 632 KYSPLAFEMVKVLSNGHD-----SSADFWNHRELVHVD-SSENGKVLSIACFRD-KIFSGHSDGT--------------I 690 (949)
Q Consensus 632 ~~~~~~~~~~~l~s~s~d-----g~I~vWd~~~~~~~~-~~h~~~V~~l~~s~d-~lasgs~Dg~--------------I 690 (949)
....+++||++|+.++.+ ..|++||..+..... ..+...+..++|+|| .|+.++.|+. |
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence 345677899998887654 469999998532221 112222367899997 7777776654 8
Q ss_pred EEEecCCCce--eeeEEecccCCCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCC--e-eEEEEeecCCCceeeee
Q 002234 691 KVWTGRGSIL--HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGNE--E-IHCVQVHDIKDQIQNLA 760 (949)
Q Consensus 691 ~vWd~~t~~~--~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg-----~I~vWd~~~~--~-~~~~~~~~~~~~v~~l~ 760 (949)
++|++.++.. ..+.....|...+..+.|+|||++|+..+.++ .|++||+.++ + ...+. .........
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~- 322 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDF- 322 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEE-
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEE-
Confidence 9999987742 23333334445689999999999998887654 8999999876 2 23222 222222211
Q ss_pred eccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc-eeeeecccccccCCCCCE
Q 002234 761 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPV 839 (949)
Q Consensus 761 ~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~~~~h~~~V 839 (949)
++|+|+.+++.+..+ ..++.|.+||+.++. ... ..+..+...+
T Consensus 323 -------~~~dg~~l~~~s~~~------------------------~~~~~l~~~d~~~~~~~~~-----~l~~~~~~~l 366 (741)
T 1yr2_A 323 -------VDGVGDQLWFVSGDG------------------------APLKKIVRVDLSGSTPRFD-----TVVPESKDNL 366 (741)
T ss_dssp -------EEEETTEEEEEECTT------------------------CTTCEEEEEECSSSSCEEE-----EEECCCSSEE
T ss_pred -------EeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCccccE-----EEecCCCCeE
Confidence 346776543322110 124568999988752 221 1222334456
Q ss_pred EEEEEeCCceEEEEEECCCCEEEEEECC-CCeeEEeec--CCCcEEEEEEcCC--EEE-EEE---CCCeEEEEECCCCc
Q 002234 840 HALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGSLP--TLSEVRAMVVSSE--LVY-LGC---KGGTVEIWDQKRQI 909 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~Dg~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~s~d--~l~-sgs---~dg~I~vwd~~~~~ 909 (949)
..+.+. ++.++++...|+ ..++|.+. ++.....+. +...+..+.++|+ .++ +.+ ..++|++||+.+++
T Consensus 367 ~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 367 ESVGIA-GNRLFASYIHDA-KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEE-BTEEEEEEEETT-EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEE-CCEEEEEEEECC-EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 778887 555667777775 76666544 455556555 4567888999887 333 332 34789999998876
No 292
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.00 E-value=1.8e-10 Score=94.36 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=43.1
Q ss_pred CCcccCcCccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dP-v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
..+..||||++.+.+| ++++|||+||+.||.+|+..+ ..||.||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 3467899999999997 678999999999999999874 599999998864
No 293
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.00 E-value=6.6e-09 Score=115.48 Aligned_cols=175 Identities=7% Similarity=0.008 Sum_probs=125.2
Q ss_pred cccccccccEEEEecCCCCeEEEecCCce------------eeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCce
Q 002234 633 YSPLAFEMVKVLSNGHDSSADFWNHRELV------------HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~dg~I~vWd~~~~~------------~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~ 700 (949)
...++.....+++|+.++ +++|+.+... .....+.+ |+.++|..++|+++ .+|.|++||+.+.
T Consensus 42 lLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl-- 116 (388)
T 1xip_A 42 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEEL-- 116 (388)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSST--
T ss_pred EEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhh--
Confidence 344556677888888885 5569875322 12335667 99999944588888 8899999999877
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEe
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~ 780 (949)
........|...|.++.+.+. .+++++.||+|.+||+.++.... +...|.+++ |+|+|
T Consensus 117 ~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~-------WSpkG-------- 174 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFD-------VTNSQ-------- 174 (388)
T ss_dssp TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEE-------ECSSE--------
T ss_pred hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEE-------EcCCc--------
Confidence 344556678888988877654 38999999999999999874321 122333333 44444
Q ss_pred cCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCce--eeeeccccccc---CCCCCEEEEEEeCCceEEEEEE
Q 002234 781 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF--ATIQTGHRKLL---GKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 781 ~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s 855 (949)
++.|..||++++|+...+.. ...+.....+. +|...|.+|.|.+++.++++..
T Consensus 175 ----------------------~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 175 ----------------------LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ----------------------EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ----------------------eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 67789999999999887775 43333222233 4778999999999999999876
Q ss_pred C
Q 002234 856 L 856 (949)
Q Consensus 856 ~ 856 (949)
.
T Consensus 233 ~ 233 (388)
T 1xip_A 233 N 233 (388)
T ss_dssp C
T ss_pred C
Confidence 5
No 294
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.00 E-value=5.8e-08 Score=105.25 Aligned_cols=229 Identities=6% Similarity=0.033 Sum_probs=145.5
Q ss_pred ccccccEEEE-------ecCCCCeEEEecCC-ceeeec-----CCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCce
Q 002234 636 LAFEMVKVLS-------NGHDSSADFWNHRE-LVHVDS-----SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 700 (949)
Q Consensus 636 ~~~~~~~l~s-------~s~dg~I~vWd~~~-~~~~~~-----~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~ 700 (949)
+..++..+++ +..++.|.+||..+ ....+. ++...+.+++++++ .+..++.++.|.+||.. ++
T Consensus 25 ~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~- 102 (314)
T 1pjx_A 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT- 102 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-
T ss_pred ECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-
Confidence 3456766666 56788999999753 222222 25577999999986 66666666689999998 63
Q ss_pred eeeEE-ec----ccCCCEEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCeeEEEEeecCCCceeeee
Q 002234 701 HLIQQ-IR----EHTKAVTGLAILQSGEMLYSGSLD---------------KTARVWSIGNEEIHCVQVHDIKDQIQNLA 760 (949)
Q Consensus 701 ~~i~~-l~----~H~~~V~~v~fspdg~~L~Sgs~D---------------g~I~vWd~~~~~~~~~~~~~~~~~v~~l~ 760 (949)
.... .. .+...+.+++++++|++.++.+.+ +.|..||.. ++...... .......+
T Consensus 103 -~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~i- 177 (314)
T 1pjx_A 103 -FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNGI- 177 (314)
T ss_dssp -EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEEE-
T ss_pred -EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcceE-
Confidence 3222 11 122458899999999988877665 466667665 43222211 11112222
Q ss_pred eccceEEEE----eCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECC-CCceeeeecccccccC
Q 002234 761 VSNSILCFI----PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLA-TGTFATIQTGHRKLLG 834 (949)
Q Consensus 761 ~~~~~~~fs----p~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~ 834 (949)
+++ |+|+. ++++ ..++.|.+||.. ++..... .....+.+
T Consensus 178 ------~~~~~~d~dg~~----------------------------l~v~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~ 222 (314)
T 1pjx_A 178 ------AVRHMNDGRPYQ----------------------------LIVAETPTKKLWSYDIKGPAKIENK-KVWGHIPG 222 (314)
T ss_dssp ------EEEECTTSCEEE----------------------------EEEEETTTTEEEEEEEEETTEEEEE-EEEEECCC
T ss_pred ------EEecccCCCCCE----------------------------EEEEECCCCeEEEEECCCCCccccc-eEEEECCC
Confidence 355 55543 3333 456788888876 3432110 00012233
Q ss_pred CC-CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCC
Q 002234 835 KA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKR 907 (949)
Q Consensus 835 h~-~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~ 907 (949)
+. ..+..+++++++.+.++...++ .|.+||..+++....+. +...+.+++++++ .+++++ .++.|..|+...
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 33 5578899999998888776665 99999998777666665 3477999999887 466655 457899999864
No 295
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=4.8e-10 Score=92.08 Aligned_cols=52 Identities=19% Similarity=0.479 Sum_probs=44.4
Q ss_pred CCCCcccCcCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 66 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~---dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 66 (949)
+...+..||||++.|. +|++++|||.||+.||.+|+... ..||.||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence 4567889999999884 56788999999999999999874 4899999988753
No 296
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.99 E-value=2.3e-10 Score=89.26 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=42.2
Q ss_pred CcccCcCccccccC----ceecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~d----Pv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
++..||||++.+.+ |++++|||.||+.||.+|+... ..||.||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999977 8889999999999999999886 69999998875
No 297
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.99 E-value=5e-08 Score=105.84 Aligned_cols=249 Identities=8% Similarity=0.020 Sum_probs=150.3
Q ss_pred ecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 002234 664 DSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 740 (949)
Q Consensus 664 ~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~ 740 (949)
+..+........|+++ +++++..++.|..|+. ++. ...+..+...+..++++++|+++++...++.|..|+..
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 3344555678899885 6788888999999998 452 34455567789999999999977766667889999986
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 820 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~ 820 (949)
++...+......... ..+..+++.++|+..++-...|...-+.... .......+.|..||..++
T Consensus 116 -g~~~~~~~~~~~~~~----~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~-----------~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRL----NSPNDLIVARDGAIWFTDPPFGLRKPSQGCP-----------ADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp -SCEEEEECEETTEEC----SCCCCEEECTTSCEEEECCSGGGSCGGGSCC-----------CCCSSSCEEEEEECSSSC
T ss_pred -CCEEEEEeccCCCcc----CCCCCEEECCCCCEEEeCcCCCccccccccc-----------cccccCCCeEEEEcCCCC
Confidence 543333221111000 0112234777776432100000000000000 000001246777887777
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC-----CCEEEEEECCCCeeE--Eeec--CCCcEEEEEEcCC-E
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD-----GAAVKMWSTSNYNMV--GSLP--TLSEVRAMVVSSE-L 890 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----g~~I~iwd~~~~~~~--~~~~--~~~~v~~l~~s~d-~ 890 (949)
+..... .....+.++|+|++..+..+... .+.|.+||+..+... ..+. .......++++++ .
T Consensus 180 ~~~~~~--------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 180 PLQRMA--------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp CCEEEE--------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred cEEEEe--------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 654321 22456789999999866665544 148999998765411 1111 2344567888887 5
Q ss_pred EEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 891 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 891 l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
+++++.+ .|.+||. .++.+..+.. +. .+.+++|+|+++.|+.++.++..+
T Consensus 252 lwv~~~~-gv~~~~~-~g~~~~~~~~-~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 252 LWSSSGT-GVCVFDS-DGQLLGHIPT-PG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECCSS-EEEEECT-TSCEEEEEEC-SS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEEecCC-cEEEECC-CCCEEEEEEC-CC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 6666654 5999998 5777777742 33 589999999999998888765443
No 298
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=2.9e-10 Score=88.71 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=43.1
Q ss_pred CCCcccCcCccccccC---ceecC-CCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDD---PVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~d---Pv~~~-cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
+.++..||||++.|.+ |++++ |||.||+.||.+|+.. +..||.||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4677889999999998 88887 9999999999999977 458999998764
No 299
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.96 E-value=1e-07 Score=115.50 Aligned_cols=293 Identities=11% Similarity=0.103 Sum_probs=169.5
Q ss_pred cccEEEEecCCCCeEEEecCCc--eeeecCCCC----------c-eEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEE
Q 002234 639 EMVKVLSNGHDSSADFWNHREL--VHVDSSENG----------K-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~----------~-V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~ 705 (949)
.+..++.++.++.|.-+|..+. +.....+.. . -..+.+..+.++.++.||.|..+|..+| +.+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG--~~~W~ 146 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTG--QRAWS 146 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCC--CEeee
Confidence 3556666777788888887632 222221111 0 1234556679999999999999999999 56666
Q ss_pred eccc--CCCEEEEEEec---CCCEEEEEe------CCCcEEEEECCCCeeEEEEeecCCCcee-----------------
Q 002234 706 IREH--TKAVTGLAILQ---SGEMLYSGS------LDKTARVWSIGNEEIHCVQVHDIKDQIQ----------------- 757 (949)
Q Consensus 706 l~~H--~~~V~~v~fsp---dg~~L~Sgs------~Dg~I~vWd~~~~~~~~~~~~~~~~~v~----------------- 757 (949)
+... ......+..+| ++. ++.++ .||.|+.||..+|+..-........+..
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 5432 11111111122 444 44443 3789999999999732221110000000
Q ss_pred ------eeeeccceEEEEeCCCEEEEEEecCe-------------------EEEecCCCC--------------------
Q 002234 758 ------NLAVSNSILCFIPQGAGIKVHLRNGK-------------------TKLLNSSKY-------------------- 792 (949)
Q Consensus 758 ------~l~~~~~~~~fsp~g~~l~~~~~~g~-------------------i~~~~~~~~-------------------- 792 (949)
.-........+.|++..+.++..++. +..++....
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 00000012346666666666655432 444432110
Q ss_pred -ceE--EEEeCC----EEEEEECCCcEEEEECCCCceeeeecccc--------------------c--ccCCC-------
Q 002234 793 -PKC--LALVQG----KVYCGCQDGAIQEIDLATGTFATIQTGHR--------------------K--LLGKA------- 836 (949)
Q Consensus 793 -v~~--v~~~~~----~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~--------------------~--~~~h~------- 836 (949)
+.. +.+ ++ .++.++.+|.++++|..+|+.+....... . +....
T Consensus 306 ~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 306 HMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp CEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 001 111 23 47888999999999999999873221100 0 00000
Q ss_pred ----CCEEEEEEeCCceEEEEEECC--------------------------------------------CCEEEEEECCC
Q 002234 837 ----NPVHALQVHNGLVYTASTSLD--------------------------------------------GAAVKMWSTSN 868 (949)
Q Consensus 837 ----~~V~~l~~~~~~~~l~s~s~D--------------------------------------------g~~I~iwd~~~ 868 (949)
..-..++++|+...+.....+ ++.|..||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 011236777765554443211 13899999999
Q ss_pred CeeEEeecCCCcEE--EEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEE
Q 002234 869 YNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 935 (949)
Q Consensus 869 ~~~~~~~~~~~~v~--~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~ 935 (949)
++.+..+++..... .+....+.++.|+.||.++.||.++|+.+.+++.++.....-+.|..||+..+
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 99998887544333 33334558999999999999999999999999766554445677888986443
No 300
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.3e-09 Score=124.10 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHH
Q 002234 141 EMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVAL 220 (949)
Q Consensus 141 ~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~l 220 (949)
..|+.-+.++|....... .........++..|..+ +.+.++.|+..|..+ +.+..+++.|...++.++.|+.+
T Consensus 312 ~lAavvL~KL~~~~~~~~-----~si~~La~~~~~~L~~~-~~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 312 IYSALVLVKTWSFTKLTC-----INLKQLSEIFINAISRR-IVPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp HHHHHHHHHHTGGGTCTT-----CCHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCc-----CcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHH
Confidence 345555555665443210 11122445566666664 333489999999999 77888999999888889999999
Q ss_pred Hhh-C----hhhHHHHHHhcCCChHHHHH-hhhhHHHHHHHHhc-cccchhcccCchhhHHHHHHHHhcCCccccccc-c
Q 002234 221 FKK-G----LLEAVVLIDLLRPSTRTLIE-MDMMESLMTVIKKK-EEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSS-I 292 (949)
Q Consensus 221 lk~-g----~~~Aa~~l~~L~~~~~~~~~-~~~~~~lv~~l~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 292 (949)
++. + ...|+..|.+|....+++.. ...+.-|-...+.. .+. .++++.+ .+ .+...+ +
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~------~~~d~~~--~~-------~~~v~~~~ 449 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAA------DKVGAEK--AA-------KEDILLFN 449 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------------CCTHH--HH-------HHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCccc------Ccccccc--cc-------hHHHHHHH
Confidence 995 4 45688899999654443322 11222222222111 000 1111111 00 011123 7
Q ss_pred hhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCc---chhHHHHHHHHh
Q 002234 293 ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDG---ERFEIVCFLSEL 369 (949)
Q Consensus 293 ~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l 369 (949)
+..+...|+||+|+.++++++...|+.|+.+|.++. .+..+|..+.+.|++++|+.+|.+++.. .|..|..+|..|
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999885 5689999999999999999999998765 688999999998
Q ss_pred hhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCcc--------------chhHHHHHHhhhcccC----CCCCCcc
Q 002234 370 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ--------------CPVVAGLLLQLDLLAE----PRKMSIY 431 (949)
Q Consensus 370 ~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~--------------~~~~a~~l~~l~~l~~----~~~~~~~ 431 (949)
+--.- .+. .+..........+|+.+|+..+..+ +--|+..|.+|....+ ..|..+.
T Consensus 529 lis~n----p~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 529 LIFTN----PGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHTSC----HHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhcCC----HHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 75311 111 1222223466688999998332221 3357788888877652 2355667
Q ss_pred HH-HHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 432 RE-EAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 432 r~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
++ +|+..|...|.++ ...+|..|++++.||..
T Consensus 603 ~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 603 STKVYWSTIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp HSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 85 8999999999875 44678899999999964
No 301
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.93 E-value=6.6e-08 Score=107.12 Aligned_cols=245 Identities=8% Similarity=-0.049 Sum_probs=155.0
Q ss_pred cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCeeEEEEeecCCCceee
Q 002234 689 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHCVQVHDIKDQIQN 758 (949)
Q Consensus 689 ~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs----------~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~ 758 (949)
+|.+.|..++ +.+.++.....+ .+.|+|||++++.+. .+++|.+||..+++..............
T Consensus 47 ~vsvID~~t~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~- 121 (368)
T 1mda_H 47 ENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS- 121 (368)
T ss_dssp EEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-
T ss_pred eEEEEECCCC--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-
Confidence 8889999999 788888655556 799999999888886 4789999999998632221111000000
Q ss_pred eeeccceEEEEeCCCEEEEEEec--CeEEE--ecCCCCceEEEE--------e-CCEEEEEECCCcEEEEECCC-----C
Q 002234 759 LAVSNSILCFIPQGAGIKVHLRN--GKTKL--LNSSKYPKCLAL--------V-QGKVYCGCQDGAIQEIDLAT-----G 820 (949)
Q Consensus 759 l~~~~~~~~fsp~g~~l~~~~~~--g~i~~--~~~~~~v~~v~~--------~-~~~l~sgs~Dg~I~iwd~~~-----~ 820 (949)
....+..+.|+|||+++.+.... ..+.+ +|... +..+.. . ...+++.+.||.+.+.|+.+ +
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 00124455699999999998863 56777 88755 444432 1 12456677899999999887 3
Q ss_pred ceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC--eeEEeecCC-----------CcEEEEEEc
Q 002234 821 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY--NMVGSLPTL-----------SEVRAMVVS 887 (949)
Q Consensus 821 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~--~~~~~~~~~-----------~~v~~l~~s 887 (949)
+...... ..+.-...+. .+..++.++.. +. + .+.+.|..+. +.+..+... .....++++
T Consensus 201 ~v~~~~t--~~i~vg~~P~---~~~~~~~~~~v-s~-~-~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 201 IVGAQCT--GAQNCSSQAA---QANYPGMLVWA-VA-S-SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp ECCCCSC--TTSCBCSCCE---EETTTTEEEEC-BS-S-CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred eEEEEee--eeeeCCCCcc---ccccCCEEEEE-cC-C-EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 3221100 0111122344 33333333333 33 4 8899998653 233333210 111126788
Q ss_pred CC--EEEEEEC---------CCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EEEEEe-CCCcEEEEeCC
Q 002234 888 SE--LVYLGCK---------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 949 (949)
Q Consensus 888 ~d--~l~sgs~---------dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs-~Dg~I~iWdl~ 949 (949)
+| .++++.. ++.+.++|..+++.+.++..+. ....++|+|||+ .+++.. .+++|.++|+.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 87 5555432 2356699999999999986443 689999999997 556666 59999999974
No 302
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.93 E-value=6.5e-10 Score=96.61 Aligned_cols=51 Identities=16% Similarity=0.550 Sum_probs=44.7
Q ss_pred CCCCcccCcCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 14 TPPKDFVCPITTHIFDD---PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 14 ~~~~~~~Cpic~~~~~d---Pv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
...++..||||++.|.+ +++++|||.||+.||.+|+.. +..||.||+.+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34577899999999988 888999999999999999986 4599999988764
No 303
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.93 E-value=2.4e-07 Score=100.04 Aligned_cols=218 Identities=8% Similarity=0.046 Sum_probs=137.5
Q ss_pred cccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecc--cCCCEEE
Q 002234 639 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--HTKAVTG 715 (949)
Q Consensus 639 ~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~--H~~~V~~ 715 (949)
++..+++...++.|..||..+.......+...+.+++++++ .++.+. ++.|.+||..+++...+..... ....++.
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 35567777788999999987543333445678999999987 444444 5689999999884433333221 2345889
Q ss_pred EEEecCCCEEEEEeCC---------CcEEEEECCC-CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 716 LAILQSGEMLYSGSLD---------KTARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 716 v~fspdg~~L~Sgs~D---------g~I~vWd~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
++++|+|++.++...+ ..-.+|.+.. ++.... ..... .+..++|+|+|+.+
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--~~~~~-------~pngi~~spdg~~l---------- 163 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY--FDQVD-------ISNGLDWSLDHKIF---------- 163 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE--EEEES-------BEEEEEECTTSCEE----------
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE--eeccc-------cccceEEcCCCCEE----------
Confidence 9999999977765332 2345555543 222211 11111 12334588888753
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEEC--CCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEE
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL--ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 863 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~--~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~i 863 (949)
+++.+.++.|..||+ .++..... .....+..+...+..+++++++.+.++...+ +.|..
T Consensus 164 -----------------yv~~~~~~~i~~~~~d~~~G~~~~~-~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-~~v~~ 224 (297)
T 3g4e_A 164 -----------------YYIDSLSYSVDAFDYDLQTGQISNR-RSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-GRVIR 224 (297)
T ss_dssp -----------------EEEEGGGTEEEEEEECTTTCCEEEE-EEEEECCGGGCEEEEEEEBTTSCEEEEEETT-TEEEE
T ss_pred -----------------EEecCCCCcEEEEeccCCCCcccCc-EEEEECCCCCCCCCeeEECCCCCEEEEEcCC-CEEEE
Confidence 344455678888886 45543211 0001122233467889999988777766555 48999
Q ss_pred EECCCCeeEEeecC-CCcEEEEEEc-CC--EEEEEE
Q 002234 864 WSTSNYNMVGSLPT-LSEVRAMVVS-SE--LVYLGC 895 (949)
Q Consensus 864 wd~~~~~~~~~~~~-~~~v~~l~~s-~d--~l~sgs 895 (949)
||..+++.+..+.. ...+++++|. || .+++++
T Consensus 225 ~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 225 LDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 99999999888874 4789999998 55 455444
No 304
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=5.8e-10 Score=93.20 Aligned_cols=50 Identities=16% Similarity=0.529 Sum_probs=44.3
Q ss_pred CCCcccCcCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dP---v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
..++..||||++.|.+| +.++|||.||+.||.+|+... ..||.||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 45678999999999998 778999999999999999874 599999998765
No 305
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=4.3e-10 Score=105.90 Aligned_cols=53 Identities=19% Similarity=0.528 Sum_probs=48.0
Q ss_pred CCcccCcCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dP-------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
++++.||||++.|.+| |+++|||+||+.||.+|+... ..||.||+.+....+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccc
Confidence 5789999999999999 999999999999999999875 4999999999887763
No 306
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.89 E-value=4.6e-10 Score=115.21 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=125.3
Q ss_pred ccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHh-cCCcchhHHHHHH
Q 002234 288 IVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFL 366 (949)
Q Consensus 288 ~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~l 366 (949)
.+..++..|...|+||+||++|++++.+.+..|+.+|.++...+...|..|.+.|++++|++||++ ++...+.+|..+|
T Consensus 40 ~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL 119 (233)
T 3tt9_A 40 QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119 (233)
T ss_dssp HCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999977677899999999999999999985 6788899999999
Q ss_pred HHhhhccccchhHHHHHHhhccCCchhHHHHHHHH---hhcCCc-------------cchhHHHHHHhhhccc-CCCCCC
Q 002234 367 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYL---QTANHD-------------QCPVVAGLLLQLDLLA-EPRKMS 429 (949)
Q Consensus 367 ~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l---~~~~~~-------------~~~~~a~~l~~l~~l~-~~~~~~ 429 (949)
.+|.....-. ..|.++ ++ ++|+..+ .++..+ =+.-|++.|-+|..-. +.|+..
T Consensus 120 ~nLS~~~~~k------~~i~~~-~i---~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~ 189 (233)
T 3tt9_A 120 WNLSSNDKLK------NLMITE-AL---LTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189 (233)
T ss_dssp HHHHTSGGGH------HHHHHH-HH---HHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHcChhhH------HHHHhc-cH---HHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9998653221 123333 23 3344322 233321 1223889999997644 334433
Q ss_pred ccHHHHHHHHHHHhhcC----C-ChHHHHHHHHHHHhcCcc
Q 002234 430 IYREEAIDTLISCLRNS----D-YPAAQLAAAKTIVSLQGR 465 (949)
Q Consensus 430 ~~r~~~~~~l~~~l~~~----~-~~~~~~~~~~~l~~l~~~ 465 (949)
+-.++.|+.|+..|+.+ . ..+.|+-|..+|-||.-+
T Consensus 190 r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 190 RRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 32345799999999874 2 446899999999999755
No 307
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.89 E-value=6.3e-09 Score=106.17 Aligned_cols=184 Identities=14% Similarity=0.179 Sum_probs=147.1
Q ss_pred hhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCC-ChHHH---HH
Q 002234 173 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTL---IE 244 (949)
Q Consensus 173 l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~-~~~~~---~~ 244 (949)
++.+| .+.+.++++.|..+|.++...++..+..+. ..|.++.|+.+|+.+ ...|+.+|.+|.. .++++ ..
T Consensus 17 l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 17 MVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 44444 567899999999999999767777777777 668999999999987 5678889999974 55543 44
Q ss_pred hhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHH
Q 002234 245 MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 324 (949)
Q Consensus 245 ~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l 324 (949)
.+.+|+|+.+|+.++.. -...+...|..|.. .+.++...++..|+++.|+++++.++.+.+..|+.+|
T Consensus 95 ~g~i~~L~~lL~~~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQ-------ILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp TTCHHHHHHHTTCSCHH-------HHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCcHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45679999999876421 12334555555532 2345667888999999999999999999999999999
Q ss_pred HHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhh
Q 002234 325 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 370 (949)
Q Consensus 325 ~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~ 370 (949)
.+++..+...+..+.+.+.+++|+.++.+.+.+.|..|..+|..|.
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999887888889999999999999999999999999998888774
No 308
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.8e-08 Score=118.80 Aligned_cols=286 Identities=9% Similarity=0.055 Sum_probs=192.8
Q ss_pred hhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCcc--------------------------------------ceeec
Q 002234 166 KPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKS--------------------------------------VIHTL 207 (949)
Q Consensus 166 ~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~--------------------------------------~~~~i 207 (949)
.+.++..+++++....+..+..-+..+|.|+....+. +++.+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 4455777888887656777888888888888653210 23344
Q ss_pred cccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHH---HHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHH
Q 002234 208 TRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQM 280 (949)
Q Consensus 208 ~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~---~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 280 (949)
. ..|.+++|+.+++++ +..|+.+|++|+..++++ ..-|.+++|+++|.++.+... ..+ ..|+-+ |..|
T Consensus 454 ~-eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~--~~k-~~AA~A-LArL 528 (778)
T 3opb_A 454 L-RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE--PIR-ILGCRA-LTRM 528 (778)
T ss_dssp T-TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CC--HHH-HHHHHH-HHHH
T ss_pred H-HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcch--HHH-HHHHHH-HHHH
Confidence 4 678999999999987 667888999998666555 445566999999999864310 001 122222 2222
Q ss_pred hcCCcccccccchhh-hcchhhHHHHHHhhhc--cc------------HHHHHHHHHHHHHhhhccC----CchhhHhh-
Q 002234 281 IGDSEESIVSSIANT-IVSSKVFESVISSLEA--EW------------AEERIAAVGILLRCMQEDG----KCRNSIAD- 340 (949)
Q Consensus 281 ~~~~~~~~~~~~~~~-i~~~g~i~~l~~~l~~--~~------------~~~~~~a~~~l~~~~~~~~----~~r~~~~~- 340 (949)
.- ..+++.... -...|+|++|+++|.. +. ..++..|+.+|.++...++ ..|..|.+
T Consensus 529 li----s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 529 LI----FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HH----TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred Hh----cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 21 122222110 0114999999999983 22 1347778888988877763 34566666
Q ss_pred hcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccC--CchhHHHHHHHHhhcCCccchhHHHHHHh
Q 002234 341 KAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEG--TYSSMHTLLVYLQTANHDQCPVVAGLLLQ 418 (949)
Q Consensus 341 ~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~--~~~~~~~l~~~l~~~~~~~~~~~a~~l~~ 418 (949)
.++++.+..|+.+.+...|..|.+++.+|..-+-.- +.++ ...++ +..-+|+|+.+++....+.+-.|+++|.+
T Consensus 605 ~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i-~~k~---~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn 680 (778)
T 3opb_A 605 KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTI-AAKF---FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGT-GGGT---SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHH-HHHH---HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 489999999999999899999999999998743210 0011 11111 12237999999999999999999999999
Q ss_pred hhcccCCCCCCccH-HHHHHHHHHHhhcC-CChHHHHHHHHHHHhcCc
Q 002234 419 LDLLAEPRKMSIYR-EEAIDTLISCLRNS-DYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 419 l~~l~~~~~~~~~r-~~~~~~l~~~l~~~-~~~~~~~~~~~~l~~l~~ 464 (949)
+-.-.++...-+++ +++++.+++.|+.. +....|..++-++.||..
T Consensus 681 Lts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 681 IATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 94323332233344 48999999999985 566778889999988876
No 309
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=8.9e-10 Score=123.31 Aligned_cols=204 Identities=14% Similarity=0.098 Sum_probs=114.8
Q ss_pred EeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCc
Q 002234 676 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 755 (949)
Q Consensus 676 ~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~ 755 (949)
...+.+++++.||.|+.||..+| +.+.++.. +.+.+..+..++..+++++.||.|+.||..+|+............
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 34569999999999999999999 67777765 556666666778888888999999999998875211111110000
Q ss_pred eeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCC
Q 002234 756 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK 835 (949)
Q Consensus 756 v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 835 (949)
+.+ .+ ++. .++.+++|+.|+.+..||..+|+....+.. +
T Consensus 83 ~~~---sp---~~~-----------------------------~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~------~ 121 (369)
T 2hz6_A 83 VQA---SP---CRS-----------------------------SDGILYMGKKQDIWYVIDLLTGEKQQTLSS------A 121 (369)
T ss_dssp HTT---CS---CC----------------------------------CCCCEEEEEEEEECCC-----------------
T ss_pred ccc---Cc---eEe-----------------------------cCCEEEEEeCCCEEEEEECCCCcEEEEecC------C
Confidence 000 00 000 123477888899999999999988754322 1
Q ss_pred CCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcC-----CEEEEEECCCeEEEEECCCCcE
Q 002234 836 ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSS-----ELVYLGCKGGTVEIWDQKRQIR 910 (949)
Q Consensus 836 ~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~-----d~l~sgs~dg~I~vwd~~~~~~ 910 (949)
. ...++|++..++.++.|+ .|..||..+++.+..+.... .....+++ +.+++++.+|.|+.||..+|+.
T Consensus 122 ~----~~~~~p~~~~v~~~~~dg-~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 122 F----ADSLSPSTSLLYLGRTEY-TITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ---------------EEEEEEEE-EEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred C----cccccccCCEEEEEecCC-EEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 1 123445666667777776 99999999998776654211 12233344 4688899999999999999998
Q ss_pred EEEecccccccee-EEEEeCCCC
Q 002234 911 IETLQTGTSGKVQ-CMALDDNEE 932 (949)
Q Consensus 911 ~~~l~~~h~~~I~-~l~~spdg~ 932 (949)
+..+. ...++. ...+++||.
T Consensus 196 ~W~~~--~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 196 LWIQN--YASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEE--CSSCEEEEEECTTSSC
T ss_pred EEEec--CCCceEEEEEecCCce
Confidence 88875 333443 344556664
No 310
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.87 E-value=1.2e-07 Score=104.79 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=139.4
Q ss_pred CceEEEEEeCC--EEEEEe--CCCcEEEEecCCCceeeeEEe-------cccCCCEEEEEEecCCCEEEEEeC-----CC
Q 002234 669 GKVLSIACFRD--KIFSGH--SDGTIKVWTGRGSILHLIQQI-------REHTKAVTGLAILQSGEMLYSGSL-----DK 732 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs--~Dg~I~vWd~~t~~~~~i~~l-------~~H~~~V~~v~fspdg~~L~Sgs~-----Dg 732 (949)
..+..++++++ .+++.. .++.++||.+.++ + +..+ .+|-..+..++|+++|+++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 67899999986 555543 2454666666555 2 2222 235578999999999887666544 57
Q ss_pred cEEEEECCCCeeE-EEEeecC----CCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE
Q 002234 733 TARVWSIGNEEIH-CVQVHDI----KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 807 (949)
Q Consensus 733 ~I~vWd~~~~~~~-~~~~~~~----~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs 807 (949)
.|.+||+.+++.. .+..... ...+..+ ++.+++..+ +++..
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v-------~vd~~~g~~---------------------------yvtd~ 139 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDL-------AVDLIHNFV---------------------------YISDP 139 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEE-------EEETTTTEE---------------------------EEEEC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceE-------EEecCCCEE---------------------------EEEcC
Confidence 8999999988632 2221110 0112233 255443332 12222
Q ss_pred ---CCCcEEEEECCCCceeeeecccccc---------cC--------------CCCCEEEEEEeCCceEEEEEECCCCEE
Q 002234 808 ---QDGAIQEIDLATGTFATIQTGHRKL---------LG--------------KANPVHALQVHNGLVYTASTSLDGAAV 861 (949)
Q Consensus 808 ---~Dg~I~iwd~~~~~~~~~~~~~~~~---------~~--------------h~~~V~~l~~~~~~~~l~s~s~Dg~~I 861 (949)
.++.|.+||+.+++.......+... .+ ....++.++++|++..+..+..+++.+
T Consensus 140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 4567777777766654433211000 00 012468899999998887777776566
Q ss_pred EEEECC---CCe-----e---EEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEe
Q 002234 862 KMWSTS---NYN-----M---VGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 928 (949)
Q Consensus 862 ~iwd~~---~~~-----~---~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~s 928 (949)
..++.. .+. . +....+......++++++ .+++...++.|.+||..+++........+...+.+++|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 555532 111 0 011112234567888887 455556788999999866664333322234568999999
Q ss_pred CCCCEEEEEeCCCc
Q 002234 929 DNEEFLVIGTSDGR 942 (949)
Q Consensus 929 pdg~~L~sgs~Dg~ 942 (949)
++|+++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 99998888775443
No 311
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.87 E-value=1.6e-09 Score=98.85 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=43.8
Q ss_pred CCCcccCcCccccccCce------------------ecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPV------------------TLETGQTYERRAIQEWIER----GNSSCPITRQKLSST 66 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv------------------~~~cghtfc~~ci~~~~~~----~~~~CP~c~~~~~~~ 66 (949)
.+.+..||||++.|.+|+ +++|||.||+.||.+|+.. .+..||.||..+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 445679999999999886 7899999999999999963 355899999988644
No 312
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.86 E-value=3.6e-09 Score=107.95 Aligned_cols=195 Identities=12% Similarity=0.133 Sum_probs=150.0
Q ss_pred HHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhh
Q 002234 249 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 328 (949)
Q Consensus 249 ~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~ 328 (949)
|+|+.+|+..+.. -...|...|..|. ..+.+++..+++.|+++.|+++++.++.+.+..|+.+|.++.
T Consensus 15 ~~l~~LL~s~~~~-------v~~~a~~~L~~l~-----~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 15 PQMVQQLNSPDQQ-------ELQSALRKLSQIA-----SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp HHHHHHTTCSCHH-------HHHHHHHHHHHHH-----TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHH-------HHHHHHHHHHHHH-----cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6666666554321 1223444444442 134567788999999999999999999999999999999998
Q ss_pred hccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCcc
Q 002234 329 QEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ 408 (949)
Q Consensus 329 ~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~ 408 (949)
..+...+..+.+.+.+++++.+|.+.+...|..|+.+|.++.... .+..+.+.+.|.+ ..|+.+|+...++-
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i---~~L~~ll~~~~~~v 154 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGAL---PALVQLLSSPNEQI 154 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHH---HHHHHHTTCSCHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCcH---HHHHHHHcCCCHHH
Confidence 888888899999999999999999999999999999999997642 2233445566665 56899999888888
Q ss_pred chhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 409 CPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 409 ~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
+..++..|.++..-.+..+..+...++++.|+..|.++ .+.+|..|+.+|.+|+.
T Consensus 155 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 88889999988553344444555678899999999865 45779999999999874
No 313
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.85 E-value=4.2e-06 Score=93.34 Aligned_cols=250 Identities=14% Similarity=0.156 Sum_probs=156.2
Q ss_pred EeCCEEEEEeCCCcEEEEecCCCceeeeEEeccc---------CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 002234 676 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH---------TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 676 ~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H---------~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~ 746 (949)
...+.++.++.+|.|..||..++ +.+..+... ...+.+. ...++..++.++.|+.|..+|..+|+..-
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 34678999999999999999999 555555432 1223221 22245678889999999999999986332
Q ss_pred EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC-----------CCc------eEEEEeCCEEEEEECC
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYP------KCLALVQGKVYCGCQD 809 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~-----------~~v------~~v~~~~~~l~sgs~D 809 (949)
.... ...+.... .. .+..+.++..++.+..++.. ..+ ......++.+++++.+
T Consensus 128 ~~~~--~~~~~~~p-------~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~ 197 (376)
T 3q7m_A 128 QTKV--AGEALSRP-------VV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDN 197 (376)
T ss_dssp EEEC--SSCCCSCC-------EE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTT
T ss_pred EEeC--CCceEcCC-------EE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCC
Confidence 2211 22221110 01 12234444444444444321 111 2233446889999999
Q ss_pred CcEEEEECCCCceeeeeccccccc---------CCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCc
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLL---------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE 880 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~---------~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~ 880 (949)
+.+..+|..+|+............ ....+ .... +. +..++.++ .+..+|..+++.+...... .
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p----~~~~-~~-v~~~~~~g-~l~~~d~~tG~~~w~~~~~-~ 269 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP----VVVN-GV-VFALAYNG-NLTALDLRSGQIMWKRELG-S 269 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCC----EEET-TE-EEEECTTS-CEEEEETTTCCEEEEECCC-C
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc----EEEC-CE-EEEEecCc-EEEEEECCCCcEEeeccCC-C
Confidence 999999999999875543211000 01111 1223 33 33334455 8999999999988776633 3
Q ss_pred EEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 881 VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 881 v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...+....+.+++++.++.+..+|..+++.+..........+...... +..|+.++.+|.|.+||.
T Consensus 270 ~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 270 VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp EEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred CCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEEC
Confidence 556777778999999999999999999998877742222233444443 567888999999999985
No 314
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=5.3e-10 Score=92.88 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=41.7
Q ss_pred CCCcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
+.+++.|+||++.+.+||+++|||+ ||+.|+.+| ..||.||+.+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4467899999999999999999999 999999988 589999998864
No 315
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=5.2e-07 Score=108.96 Aligned_cols=294 Identities=13% Similarity=0.106 Sum_probs=165.8
Q ss_pred ccEEEEecCCCCeEEEecCCceee--ecCCCC-----------ceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHV--DSSENG-----------KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~-----------~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
+..++.++.++.|.-+|..+.... ...... ....+++..+.++.++.|+.+..+|..+| +.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG--~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATG--KEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCC--CEEeee
Confidence 445556666778887887632221 111110 11245566779999999999999999999 677776
Q ss_pred ccc-C----CCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCeeEEEEeecCCCceeeee-----------e---
Q 002234 707 REH-T----KAVTGLAILQSGEMLYSGSL------DKTARVWSIGNEEIHCVQVHDIKDQIQNLA-----------V--- 761 (949)
Q Consensus 707 ~~H-~----~~V~~v~fspdg~~L~Sgs~------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~-----------~--- 761 (949)
..+ . ..+.+--.. .+..++.++. +|.|+.||..+|+..-..... ........ +
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~-~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV-PGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS-CCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccC-CCCcccccccccccccccccccc
Confidence 544 1 112111111 2345555543 799999999999732222111 10000000 0
Q ss_pred -----------ccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 762 -----------SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 762 -----------~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
......+.|++..+.++..++.. |....... ..++.++ -++|..+|..+|+....+....
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~---~~gd~~~----~~sv~AlD~~TG~~~W~~~~~~ 303 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSP---KGGDNLY----LASIVALDPDTGKYKWHYQETP 303 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHST---TCCCCTT----TTEEEEECTTTCCEEEEEESST
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCCc---cCCCCee----eEEEEEEECCCCCEEEEEecCC
Confidence 00122344444443333222111 11000000 0000000 0259999999999886543211
Q ss_pred c-cc--CCCCCEEEEEEeCCc---eEEEEEECCCCEEEEEECCCCeeEEeecCC--C----------cE-----------
Q 002234 831 K-LL--GKANPVHALQVHNGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTL--S----------EV----------- 881 (949)
Q Consensus 831 ~-~~--~h~~~V~~l~~~~~~---~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~--~----------~v----------- 881 (949)
. .. .......-+....++ ..++.++.+| .+.++|..+|+.+..+... . .+
T Consensus 304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG-FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP 382 (677)
T ss_dssp TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred CcccccccCCCcEEEecccCCcEeeEEEEECCCC-EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence 0 00 001122223333455 6777777776 9999999999988766511 1 01
Q ss_pred -------------EEEEEcCC--EEEEEEC-------------------------------------------CCeEEEE
Q 002234 882 -------------RAMVVSSE--LVYLGCK-------------------------------------------GGTVEIW 903 (949)
Q Consensus 882 -------------~~l~~s~d--~l~sgs~-------------------------------------------dg~I~vw 903 (949)
..++++|+ .+++... .|.|..|
T Consensus 383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~ 462 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW 462 (677)
T ss_dssp EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence 14678886 5655432 2789999
Q ss_pred ECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 904 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 904 d~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
|..+++.+..+. +...+....++.++..++.++.||.+++||..
T Consensus 463 D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 463 DPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp ETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred eCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 999999988885 34456666777888899999999999999963
No 316
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.83 E-value=9.5e-07 Score=96.71 Aligned_cols=213 Identities=11% Similarity=0.035 Sum_probs=130.9
Q ss_pred ccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecc--cCCCEEEE
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--HTKAVTGL 716 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~--H~~~V~~v 716 (949)
+..+++...++.|..||..+.......+...+.+++|+++ .++.++.+| |.+||..+++...+..... ....+..+
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~i 139 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDG 139 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEEEEeeCCCCCCCCCCCCE
Confidence 4566677778899999987533222234568999999986 455555554 9999998884333322211 12468999
Q ss_pred EEecCCCEEEEEeCC------CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 717 AILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 717 ~fspdg~~L~Sgs~D------g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
.++|+|++.++...+ +.|..++ +++...+.. ...... .++|+|+|+.+
T Consensus 140 ~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~-------~i~~s~dg~~l--------------- 193 (326)
T 2ghs_A 140 RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPN-------SICFSPDGTTG--------------- 193 (326)
T ss_dssp EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEE-------EEEECTTSCEE---------------
T ss_pred EECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccC-------CeEEcCCCCEE---------------
Confidence 999999977665432 3455555 454332211 111222 33478887753
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECC--CC-cee--eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEE
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLA--TG-TFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 865 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~--~~-~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd 865 (949)
+++.+.++.|.+||+. ++ ... ..+ ..+......+..+++++++.+.++...++ .|..||
T Consensus 194 ------------yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~-~v~~~d 257 (326)
T 2ghs_A 194 ------------YFVDTKVNRLMRVPLDARTGLPTGKAEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEG-AVDRYD 257 (326)
T ss_dssp ------------EEEETTTCEEEEEEBCTTTCCBSSCCEEE---EECTTSSSEEEEEEECTTSCEEEEEETTT-EEEEEC
T ss_pred ------------EEEECCCCEEEEEEcccccCCcccCceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCC-EEEEEC
Confidence 2333456788899875 55 321 111 11222334567899998887776665444 899999
Q ss_pred CCCCeeEEeec-CCCcEEEEEEc-CC--EEEEEEC
Q 002234 866 TSNYNMVGSLP-TLSEVRAMVVS-SE--LVYLGCK 896 (949)
Q Consensus 866 ~~~~~~~~~~~-~~~~v~~l~~s-~d--~l~sgs~ 896 (949)
. +++.+..+. ....+.+++|+ ++ .+++++.
T Consensus 258 ~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp T-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred C-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 8 567766666 44579999998 66 4555543
No 317
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.82 E-value=1.8e-07 Score=103.69 Aligned_cols=274 Identities=8% Similarity=-0.028 Sum_probs=163.0
Q ss_pred cEEEEecCCC----CeEEEecCC--ceeeecCCCCceEEEEEeCC--EEEEEe----------CCCcEEEEecCCCceee
Q 002234 641 VKVLSNGHDS----SADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGSILHL 702 (949)
Q Consensus 641 ~~l~s~s~dg----~I~vWd~~~--~~~~~~~h~~~V~~l~~s~d--~lasgs----------~Dg~I~vWd~~t~~~~~ 702 (949)
..+++...++ +|.++|..+ .+........+ .+.++|| +++.+. .+++|.+||..++ +.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~v 108 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LP 108 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CE
Confidence 3455555555 677999874 33333333344 7999997 555554 4789999999999 67
Q ss_pred eEEeccc-------CCCEEEEEEecCCCEEEEEeC--CCcEEE--EECCCCeeEEEEeecCCCceeeeeecc--ceEEEE
Q 002234 703 IQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARV--WSIGNEEIHCVQVHDIKDQIQNLAVSN--SILCFI 769 (949)
Q Consensus 703 i~~l~~H-------~~~V~~v~fspdg~~L~Sgs~--Dg~I~v--Wd~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~fs 769 (949)
+.++.-+ ......+.|+|||++++.+.. +..|.+ +|+.+ ...+.. .+.+ .+.... ....++
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v---~~~~-~~~p~g~~~~~~~~ 182 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS---ASCF-HIHPGAAATHYLGS 182 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC---SSCC-CCEEEETTEEECCC
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC---CCce-EEccCCCeEEEEEc
Confidence 7777533 123567899999999998874 467888 99877 232221 1110 010000 112355
Q ss_pred eCCCEEEEEEec-----CeEE-----EecCCCCceEEEEe-CCEEEEEECCCcEEEEECCCCceeee--ecccc---ccc
Q 002234 770 PQGAGIKVHLRN-----GKTK-----LLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATI--QTGHR---KLL 833 (949)
Q Consensus 770 p~g~~l~~~~~~-----g~i~-----~~~~~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~~---~~~ 833 (949)
++|+.+.+.... +++. .+....... ... ++.++..+. +.+.+.|..++..... ..... ...
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence 666655443332 2221 111111222 222 356666666 9999999876432111 10000 000
Q ss_pred C-CCCCEEEEEEeCCceEEEEEEC-C-C------CEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEE-CCCeE
Q 002234 834 G-KANPVHALQVHNGLVYTASTSL-D-G------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTV 900 (949)
Q Consensus 834 ~-h~~~V~~l~~~~~~~~l~s~s~-D-g------~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs-~dg~I 900 (949)
+ .......+.+++++..+..+.. . + ..+.++|+.+++.+.+++.......++|+|| .+++.. .+++|
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence 0 0011112679988766554322 1 1 2566999999999999986668999999998 355555 58999
Q ss_pred EEEECCCCcEEEEeccccccceeEEEEeC
Q 002234 901 EIWDQKRQIRIETLQTGTSGKVQCMALDD 929 (949)
Q Consensus 901 ~vwd~~~~~~~~~l~~~h~~~I~~l~~sp 929 (949)
.|+|..+++.+.++..+ .....+++.+
T Consensus 340 sVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred EEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 99999999999999633 2456666654
No 318
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.81 E-value=5e-08 Score=104.57 Aligned_cols=201 Identities=7% Similarity=0.081 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhhcc-----------cchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhh-hhccCCchhHHHH
Q 002234 121 ITELKHAITSLCMS-----------EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVE-ILFNSVDPRVLEA 188 (949)
Q Consensus 121 ~~el~~~i~~l~~s-----------~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~l~~s~~~~~~~~ 188 (949)
...++.++.-|.+. ...++...|+..+..+....+ ....+.+-+.+..++. +| .+.++.+++.
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d----na~~~~~~G~l~~Lv~~lL-~s~~~~vr~~ 101 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD----NAADFCQLSGMHLLVGRYL-EAGAAGLRWR 101 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHTTT-TCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh----hHHHHHHcCCHHHHHHHHH-cCCCHHHHHH
Confidence 56677777777653 223445666666666654322 2222455666777888 55 4678999999
Q ss_pred HHHHHHhhcccCccceeeccccCCcHHHHHHHHhhChhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccC
Q 002234 189 TIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLK 268 (949)
Q Consensus 189 av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~ 268 (949)
|+.+|.++...++..++.+. ..| .+|+|+.+|+...+. .
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv-~~g----------------------------------~l~~Ll~LL~~~~~~------~ 140 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVL-GLG----------------------------------ALRKLLRLLDRDACD------T 140 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-HTT----------------------------------HHHHHHHHHHHCSCH------H
T ss_pred HHHHHHHHHhCCHHHHHHHH-HCC----------------------------------CHHHHHHHHccCCCH------H
Confidence 99999999776665554444 233 445555555543211 1
Q ss_pred chhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhH
Q 002234 269 PKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 348 (949)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~ 348 (949)
-...|+..|..|..+. .....++...||+++|+.+|++++.+.+..|+.+|.+++..+...+.++.+.|.+++|+
T Consensus 141 v~~~A~~ALsnl~~~~-----~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 141 VRVKALFAISCLVREQ-----EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp HHHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 1233444454443222 23445667789999999999999999999999999999888888999999999999999
Q ss_pred HHHHhcCCcchhHHHHHHHHhhhc
Q 002234 349 ESFMAASDGERFEIVCFLSELVKL 372 (949)
Q Consensus 349 ~ll~~~~~~~~~~~~~~l~~l~~~ 372 (949)
.||.+.+.+.+..|+.+|.+|+..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999876
No 319
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.81 E-value=3.4e-06 Score=94.10 Aligned_cols=240 Identities=7% Similarity=-0.048 Sum_probs=148.0
Q ss_pred cccccccccEEEEec----------CCCCeEEEecCCce--eee-cC------CCCceEEEEEeCC--EEEEEeC--CCc
Q 002234 633 YSPLAFEMVKVLSNG----------HDSSADFWNHRELV--HVD-SS------ENGKVLSIACFRD--KIFSGHS--DGT 689 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s----------~dg~I~vWd~~~~~--~~~-~~------h~~~V~~l~~s~d--~lasgs~--Dg~ 689 (949)
...+++|+.+++.+. .++.|.+||..+.. ... .+ +......+.|+|| +|+.+.. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 455778898887775 36789999987422 111 11 1133568999997 6766653 578
Q ss_pred EEEEecCCCceeeeEE-ecccCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEEEee----cCCCceeeeeecc
Q 002234 690 IKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVH----DIKDQIQNLAVSN 763 (949)
Q Consensus 690 I~vWd~~t~~~~~i~~-l~~H~~~V~~v~fspdg-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~----~~~~~v~~l~~~~ 763 (949)
|.++| .++ +.+.+ +.. .+ ++.+.|++ +.+++.+.||++.+||. +++....... ....++..
T Consensus 150 v~viD-~t~--~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~----- 216 (373)
T 2mad_H 150 VGLVV-QGG--SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT----- 216 (373)
T ss_pred EEEEE-CCC--CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceee-----
Confidence 99999 998 56666 532 22 24556655 46677888999999999 7653211100 00011000
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeee--ecccc----cccCCCC
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI--QTGHR----KLLGKAN 837 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~~----~~~~h~~ 837 (949)
...|.+++.. ++..+.++.+.+.|+.++..... +.... ...-...
T Consensus 217 -~~~~~~~~~~----------------------------~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~ 267 (373)
T 2mad_H 217 -QPAQANKSGR----------------------------IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG 267 (373)
T ss_pred -cceeEecCCE----------------------------EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC
Confidence 0113343332 33333566777777765432111 00000 0000112
Q ss_pred CEEEEEEeCCceEEEEEECC---------CCEEEEEECCCCeeEEeecCCCcEEEEEEcCC---EEEEEE-CCCeEEEEE
Q 002234 838 PVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWD 904 (949)
Q Consensus 838 ~V~~l~~~~~~~~l~s~s~D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d---~l~sgs-~dg~I~vwd 904 (949)
....+.+++++..+.....+ ++.|.++|..+++.+.++.......+++|+|| .++++. .++.|.|||
T Consensus 268 g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 34457788877665554321 24899999999999999987778999999998 566666 589999999
Q ss_pred CCCCcEEEEe
Q 002234 905 QKRQIRIETL 914 (949)
Q Consensus 905 ~~~~~~~~~l 914 (949)
..+++.+.++
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 9999998884
No 320
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.78 E-value=2.9e-09 Score=115.44 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=45.5
Q ss_pred cccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 002234 18 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 68 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 68 (949)
+..||||.+.+.+||+++|||.||..||..|+......||.||+++.....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 479999999999999999999999999999998556699999999876543
No 321
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=9.5e-06 Score=85.76 Aligned_cols=246 Identities=10% Similarity=0.023 Sum_probs=148.5
Q ss_pred EEEEecCCCCeEEEecCCce-------eeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCC
Q 002234 642 KVLSNGHDSSADFWNHRELV-------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~~~-------~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
+|+.+.. +.|+.++..... .........+.+++|+++ .+++-..++.|.++|..++ .....+.....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~ 79 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTTCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC--CcEEEEECCCC
Confidence 4444443 467778776321 112222345789999973 4455556789999999876 22223322335
Q ss_pred CEEEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 712 AVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 712 ~V~~v~fspdg~~L~-Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
....+++++++..|+ +-...+.|.+++.+......+.... ...... +++.|++..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~-------i~vd~~~g~---------------- 135 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRG-------IVTDPVRGN---------------- 135 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEE-------EEEETTTTE----------------
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCCccE-------EEEeeCCCE----------------
Confidence 678999999755554 5455788999998754322221111 011222 336665443
Q ss_pred CCceEEEEeCCEEEEEEC---CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 791 KYPKCLALVQGKVYCGCQ---DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
++.+.. .+.|..+++...... ... .........+++++++..+..+....+.|..+|..
T Consensus 136 ------------lyv~~~~~~~~~I~~~~~dg~~~~-~~~-----~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 136 ------------LYWTDWNRDNPKIETSHMDGTNRR-ILA-----QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp ------------EEEEECCSSSCEEEEEETTSCCCE-EEE-----CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ------------EEEEECCCCCcEEEEEecCCCCcE-EEE-----ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 333332 356667776533221 110 11224678999998765554444444599999997
Q ss_pred CCeeEEeecCCCcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC
Q 002234 868 NYNMVGSLPTLSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 932 (949)
Q Consensus 868 ~~~~~~~~~~~~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~ 932 (949)
.......+........+++..+.++.+. .++.|.++|..+++.+.++..+.......+++.|++.
T Consensus 198 g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 198 QPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6544444444455677888777666666 4589999999999999988644433578899998874
No 322
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.78 E-value=1e-06 Score=99.65 Aligned_cols=234 Identities=9% Similarity=0.060 Sum_probs=138.3
Q ss_pred ccccccEEEEecCCCCeEEEecCC-ceeeecCCCCceEEEEEeCC--EEEEEeCCC--cEEEEecCCCceeeeEEe----
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDG--TIKVWTGRGSILHLIQQI---- 706 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg--~I~vWd~~t~~~~~i~~l---- 706 (949)
+..++..+++...++.|++||... .+........... ++|+++ .|+++..++ .|.+||..++. ....+
T Consensus 138 ~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~~~~~g~~~ 214 (409)
T 3hrp_A 138 AVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--APTRIGQLG 214 (409)
T ss_dssp ECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--CEEEEEECC
T ss_pred EeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc--eeEEeeecc
Confidence 445677777777789999999873 2322222233333 899986 788887766 78899987762 22233
Q ss_pred cccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccc-eEEEEeCCCEEEEEEecCeEE
Q 002234 707 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS-ILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 707 ~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~fsp~g~~l~~~~~~g~i~ 785 (949)
..+...+.+++++|++..|+.+..++.|+.||..++....+........ ....|. .++|+|++..+.
T Consensus 215 ~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~---~~~~P~~~ia~~p~~g~ly--------- 282 (409)
T 3hrp_A 215 STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS---LGTNPGPYLIYYFVDSNFY--------- 282 (409)
T ss_dssp TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC---CCCSSCCEEEEETTTTEEE---------
T ss_pred chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC---CCCCccccEEEeCCCCEEE---------
Confidence 2255678899999955555557778999999998875333321111110 001111 344777544332
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc---------cccCCCCCEEEEEEeCCceEEEEEE-
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR---------KLLGKANPVHALQVHNGLVYTASTS- 855 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~---------~~~~h~~~V~~l~~~~~~~~l~s~s- 855 (949)
++-..++.|+.||.... .. .+.+.. .....-.....+++++++.+.++-+
T Consensus 283 ------------------v~d~~~~~I~~~~~~g~-~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 283 ------------------MSDQNLSSVYKITPDGE-CE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp ------------------EEETTTTEEEEECTTCC-EE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred ------------------EEeCCCCEEEEEecCCC-EE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22233455666654432 11 111100 0011124578999999998666655
Q ss_pred CCCCEEEEEECCCCeeEEeecC---------------CCcEEEEEEcCC-EEE-EEECCCeEEEEEC
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPT---------------LSEVRAMVVSSE-LVY-LGCKGGTVEIWDQ 905 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~s~d-~l~-sgs~dg~I~vwd~ 905 (949)
.+ +.|+.||..++.......+ -.....++++++ .++ +-..++.|+.+++
T Consensus 343 ~~-~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KG-YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TT-CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CC-CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 44 5999999877764433222 145888999986 444 4455677877764
No 323
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.3e-09 Score=88.38 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=41.0
Q ss_pred CCCcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSST 66 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~~~ 66 (949)
+.+++.||||++.+.+||+++|||+ ||+.|+.+ ...||.||+++...
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 3467889999999999999999999 99999964 25899999998754
No 324
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.71 E-value=5e-07 Score=109.90 Aligned_cols=234 Identities=13% Similarity=0.115 Sum_probs=139.4
Q ss_pred ccccccccEEEE-----ecCCCCeEEEecCCceeeecCCCCc--eEEEEEeCC--EEEEEeCCCc-------------EE
Q 002234 634 SPLAFEMVKVLS-----NGHDSSADFWNHRELVHVDSSENGK--VLSIACFRD--KIFSGHSDGT-------------IK 691 (949)
Q Consensus 634 ~~~~~~~~~l~s-----~s~dg~I~vWd~~~~~~~~~~h~~~--V~~l~~s~d--~lasgs~Dg~-------------I~ 691 (949)
..+++||++++. |+.+.+|++||+.+...... +... ...++|+ | .|+.++.+.. |+
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~ 211 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY 211 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence 457889998884 33446899999985332211 2222 3567888 6 7777777643 99
Q ss_pred EEecCCCce--eeeEEecc-cCCCEEEEEEecCCCEEEEEeC----CCcEEEEECCCCe--eEEEEeecCCCceeeeeec
Q 002234 692 VWTGRGSIL--HLIQQIRE-HTKAVTGLAILQSGEMLYSGSL----DKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 692 vWd~~t~~~--~~i~~l~~-H~~~V~~v~fspdg~~L~Sgs~----Dg~I~vWd~~~~~--~~~~~~~~~~~~v~~l~~~ 762 (949)
+|++.++.. .++..... |...+..+.|+|||++|+..+. +..|++||+.++. ...+.. .......
T Consensus 212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~--~~~~~~~---- 285 (693)
T 3iuj_A 212 FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG--DLDADVS---- 285 (693)
T ss_dssp EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--SSSSCEE----
T ss_pred EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--CCCceEE----
Confidence 999987632 23444444 5667889999999998754432 3589999998763 222221 1222111
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
.++++|..++..+..+ ...+.|..+|+.++..... ..+..|...+.
T Consensus 286 ----~~~~~g~~l~~~t~~~------------------------~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~-- 331 (693)
T 3iuj_A 286 ----LVDNKGSTLYLLTNRD------------------------APNRRLVTVDAANPGPAHW----RDLIPERQQVL-- 331 (693)
T ss_dssp ----EEEEETTEEEEEECTT------------------------CTTCEEEEEETTSCCGGGC----EEEECCCSSCE--
T ss_pred ----EEeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCCcccc----EEEecCCCCEE--
Confidence 1556665542221110 1236788899987654100 12333444444
Q ss_pred EEeCCceEEEEEECCCC--EEEEEECCCCeeEEeec--CCCcEEEEEEcCC--EEEEEECC----CeEEEEECCCCcE
Q 002234 843 QVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKG----GTVEIWDQKRQIR 910 (949)
Q Consensus 843 ~~~~~~~~l~s~s~Dg~--~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~d--~l~sgs~d----g~I~vwd~~~~~~ 910 (949)
.|++++.+++....+++ .|.+||+..+. ...+. ....+..+.++++ .++....+ ++++.||+.+++.
T Consensus 332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 77777766665554433 68899987543 44443 4456777777766 33333323 7899999988763
No 325
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.2e-09 Score=93.98 Aligned_cols=68 Identities=12% Similarity=0.265 Sum_probs=52.1
Q ss_pred CCcccCcCccccccCceec---CCCccccHHHHHHHHhc----C---CCCCCC--CCCC--CCCCCCCCccHHHHHHHHH
Q 002234 16 PKDFVCPITTHIFDDPVTL---ETGQTYERRAIQEWIER----G---NSSCPI--TRQK--LSSTKLPKTNYVLKRLIAS 81 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~---~cghtfc~~ci~~~~~~----~---~~~CP~--c~~~--~~~~~~~~~n~~l~~~i~~ 81 (949)
.+++.||||++.+.+|+++ +|||+||+.|+.+++.. + ...||. |+.. ++...+ .+....+++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i--~~ll~~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI--ECMVAAEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH--HHHSCHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH--HHHCCHHHHHH
Confidence 3578999999999999875 79999999999997753 2 237999 9988 654443 34555677788
Q ss_pred HHHH
Q 002234 82 WQEQ 85 (949)
Q Consensus 82 ~~~~ 85 (949)
|.+.
T Consensus 81 y~~~ 84 (94)
T 1wim_A 81 YKKL 84 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 326
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.70 E-value=1.1e-06 Score=95.26 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=136.7
Q ss_pred cccccc-EEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC-EEEEE-eCCCcEEEEecCCCceeeeE-Eeccc-C
Q 002234 636 LAFEMV-KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSG-HSDGTIKVWTGRGSILHLIQ-QIREH-T 710 (949)
Q Consensus 636 ~~~~~~-~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d-~lasg-s~Dg~I~vWd~~t~~~~~i~-~l~~H-~ 710 (949)
+.+++. .+++...++.|..|+.......+..+.+.+..++++++ .++.+ ..++.|.+||.. +....+. ...+. .
T Consensus 52 ~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~ 130 (305)
T 3dr2_A 52 WWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRL 130 (305)
T ss_dssp EEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEEC
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCcc
Confidence 445677 56777778999999987555666667788999999986 44444 455789999986 5322221 11111 2
Q ss_pred CCEEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCC
Q 002234 711 KAVTGLAILQSGEMLYS----GSL-------------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 773 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~S----gs~-------------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~ 773 (949)
..++.++++|+|++.+| |.. .+.|..||..+++...+. ...... .++|+|||+
T Consensus 131 ~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~-------gl~~spdg~ 200 (305)
T 3dr2_A 131 NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN-------GLAFSPDEQ 200 (305)
T ss_dssp SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE-------EEEECTTSS
T ss_pred CCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc-------ceEEcCCCC
Confidence 35778999999998886 332 245777777666543332 111222 344888888
Q ss_pred EEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEE
Q 002234 774 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 853 (949)
Q Consensus 774 ~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 853 (949)
.+.+...... ...++.|..||+..+. +.... ............+++++++.+.++
T Consensus 201 ~lyv~~~~~~----------------------~~~~~~i~~~~~~~~~-l~~~~--~~~~~~~~~pdgi~~d~~G~lwv~ 255 (305)
T 3dr2_A 201 TLYVSQTPEQ----------------------GHGSVEITAFAWRDGA-LHDRR--HFASVPDGLPDGFCVDRGGWLWSS 255 (305)
T ss_dssp EEEEEECCC-------------------------CCCEEEEEEEETTE-EEEEE--EEECCSSSCCCSEEECTTSCEEEC
T ss_pred EEEEEecCCc----------------------CCCCCEEEEEEecCCC-ccCCe--EEEECCCCCCCeEEECCCCCEEEe
Confidence 6433322100 0012567777776543 11100 000111234557889988886555
Q ss_pred EECCCCEEEEEECCCCeeEEeecCCCcEEEEEEcCC--EEEEEECCC
Q 002234 854 TSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG 898 (949)
Q Consensus 854 ~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg 898 (949)
. . + .|.+||. +++.+..+.....+.+++|+++ .++.++.++
T Consensus 256 ~-~-~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 256 S-G-T-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp C-S-S-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred c-C-C-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 4 3 3 6999998 5777777765556889999876 677777654
No 327
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.68 E-value=1.8e-06 Score=94.11 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=152.1
Q ss_pred ccEEEEecCCCCeEEEecCC-ceeeecCCCCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEE
Q 002234 640 MVKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 718 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~f 718 (949)
...+..++.+ +..+|... .......+........+..+.+..++.+|.+..+|.. + +.......+...+.++..
T Consensus 70 ~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~ 144 (330)
T 3hxj_A 70 DGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIV 144 (330)
T ss_dssp TTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEE
T ss_pred CCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEE
Confidence 3345555554 77777642 1222222222223334446688888889999999988 6 455555555556677777
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEE
Q 002234 719 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 798 (949)
Q Consensus 719 spdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~ 798 (949)
.++|. ++.++.++.|..||.. ++....... ....+.++. +.++
T Consensus 145 ~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~-------~d~~--------------------------- 187 (330)
T 3hxj_A 145 SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAAS-------IGKD--------------------------- 187 (330)
T ss_dssp CTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCE-------ECTT---------------------------
T ss_pred cCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeE-------EcCC---------------------------
Confidence 76776 5567778889999988 542211111 111122211 2222
Q ss_pred eCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-
Q 002234 799 VQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT- 877 (949)
Q Consensus 799 ~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~- 877 (949)
+.+++++ +.+..|| .+++...... .....+.++...+++.+.++. .++ .+..+|. ++.....+..
T Consensus 188 --g~l~v~t--~~l~~~d-~~g~~~~~~~------~~~~~~~~~~~~~~g~l~v~t-~~~-gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 188 --GTIYFGS--DKVYAIN-PDGTEKWNFY------AGYWTVTRPAISEDGTIYVTS-LDG-HLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp --CCEEEES--SSEEEEC-TTSCEEEEEC------CSSCCCSCCEECTTSCEEEEE-TTT-EEEEECT-TSCEEEEEECS
T ss_pred --CEEEEEe--CEEEEEC-CCCcEEEEEc------cCCcceeceEECCCCeEEEEc-CCC-eEEEECC-CCCEeEEeeCC
Confidence 3466666 8889999 6666553322 223457778888876555543 344 7888874 5666555553
Q ss_pred CCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 878 LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 878 ~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
...+..+.+.++ .+++++.+|.+..+|. +++.+..+. .....+.++...++|. |..++.+|.+++...
T Consensus 254 ~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 254 KRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp SCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred CCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 333344556644 8999999999999996 777777664 3345678888878876 566889999988653
No 328
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2e-08 Score=84.99 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=40.9
Q ss_pred CcccCcCccccccC--------------ceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDD--------------PVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 17 ~~~~Cpic~~~~~d--------------Pv~~-~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
++-.|+||++.|.+ ++++ +|||.|++.||.+|+... .+||.||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4455 699999999999999875 499999998764
No 329
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.66 E-value=7.3e-06 Score=99.15 Aligned_cols=265 Identities=14% Similarity=0.173 Sum_probs=156.8
Q ss_pred eCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCC----------E-EEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 677 FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA----------V-TGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 677 s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~----------V-~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
..+.++.++.++.|..+|..+| +.+..+..+... + ..+.+ ++..++.++.|+.|..||..+|+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDG--RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEECCCC--ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 4568888899999999999999 677776543221 1 11222 4568889999999999999999733
Q ss_pred EEEeec-CCCceeeee----eccceEEEEe-------CCCEEEEEEecCeEEEecCC----C------------------
Q 002234 746 CVQVHD-IKDQIQNLA----VSNSILCFIP-------QGAGIKVHLRNGKTKLLNSS----K------------------ 791 (949)
Q Consensus 746 ~~~~~~-~~~~v~~l~----~~~~~~~fsp-------~g~~l~~~~~~g~i~~~~~~----~------------------ 791 (949)
-..... .......+. +....+.+.. +|...+.-..+|.. +|... .
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE-AWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE-EEEecccCCCcccccccccccccccccC
Confidence 222211 111111111 1111122211 11111111112222 22110 0
Q ss_pred ------------CceEEEEeC--CEEEEEECCCc-------------------EEEEECCCCceeeeeccc-ccccC--C
Q 002234 792 ------------YPKCLALVQ--GKVYCGCQDGA-------------------IQEIDLATGTFATIQTGH-RKLLG--K 835 (949)
Q Consensus 792 ------------~v~~v~~~~--~~l~sgs~Dg~-------------------I~iwd~~~~~~~~~~~~~-~~~~~--h 835 (949)
....+++++ +.+++++.++. |..||..+|+....+... ..... .
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 001455654 77888887764 999999999988655421 00000 1
Q ss_pred CCCEEEEEEeCCce---EEEEEECCCCEEEEEECCCCeeEEeecCC--C-------------------------------
Q 002234 836 ANPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTL--S------------------------------- 879 (949)
Q Consensus 836 ~~~V~~l~~~~~~~---~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~--~------------------------------- 879 (949)
..++.......++. .++.++.+| .+.++|..+|+.+...+.. .
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNG-FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCC-eEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 12232223333443 677777776 9999999999987443210 0
Q ss_pred -------cEEEEEEcCC--EEEEEEC---------------------------------------------CCeEEEEEC
Q 002234 880 -------EVRAMVVSSE--LVYLGCK---------------------------------------------GGTVEIWDQ 905 (949)
Q Consensus 880 -------~v~~l~~s~d--~l~sgs~---------------------------------------------dg~I~vwd~ 905 (949)
.-..++++|+ .+++.+. +|.|+.||.
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0112678876 5555421 378999999
Q ss_pred CCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 906 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 906 ~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.+++.+..+. . ...+..-.++..+.++++|+.||.|+.||..
T Consensus 463 ~tG~~~W~~~-~-~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 463 VKQQAAWEVP-Y-VTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp TTTEEEEEEE-E-SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCCeEeEcc-C-CCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 9999988885 2 2344545677788899999999999999963
No 330
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.65 E-value=4.5e-07 Score=98.91 Aligned_cols=254 Identities=12% Similarity=0.083 Sum_probs=155.6
Q ss_pred ccccccccEEEEecCCCCeEEEecCCc--eeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccC
Q 002234 634 SPLAFEMVKVLSNGHDSSADFWNHREL--VHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 710 (949)
Q Consensus 634 ~~~~~~~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 710 (949)
.+.......+..++.++.|..|| .+. ......+...+.++...++ .+..++.+ +..+|. ++ +.+..+..+.
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g--~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DG--TEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CG--GGGGGSCC--
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CC--cEEEEEECCC
Confidence 33333355677788888898999 432 2222223344567777654 77776665 888886 55 3333333333
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCC
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 790 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~ 790 (949)
.......+. +..++.++.++.+..+|.. ++... ........+.++. ..+
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~-~~~~~~~~~~~~~-------~~~-------------------- 146 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW-RFKTKKAIYATPI-------VSE-------------------- 146 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE-EEECSSCCCSCCE-------ECT--------------------
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE-EEcCCCceeeeeE-------EcC--------------------
Confidence 323333333 5567888888999999988 54211 1111111111111 122
Q ss_pred CCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe
Q 002234 791 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 870 (949)
Q Consensus 791 ~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~ 870 (949)
++.++.|+.++.|..||.. ++...... .....+.++...+++.+.++. + .|..|| .+++
T Consensus 147 ---------~g~l~vgt~~~~l~~~d~~-g~~~~~~~------~~~~~~~~~~~d~~g~l~v~t---~-~l~~~d-~~g~ 205 (330)
T 3hxj_A 147 ---------DGTIYVGSNDNYLYAINPD-GTEKWRFK------TNDAITSAASIGKDGTIYFGS---D-KVYAIN-PDGT 205 (330)
T ss_dssp ---------TSCEEEECTTSEEEEECTT-SCEEEEEE------CSSCCCSCCEECTTCCEEEES---S-SEEEEC-TTSC
T ss_pred ---------CCEEEEEcCCCEEEEECCC-CCEeEEEe------cCCCceeeeEEcCCCEEEEEe---C-EEEEEC-CCCc
Confidence 2357788888999999998 76654332 123456667776666655544 3 689999 7777
Q ss_pred eEEeec-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 871 MVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 871 ~~~~~~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
....+. ....+.++...++ .+++++.++.+..+|. +++.+..+. .....+..+.+.+++ .|..++.+|.|..+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 776665 4456778888888 8999999999999984 666666664 333345566666666 4667788888888763
No 331
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.64 E-value=4.7e-09 Score=98.69 Aligned_cols=56 Identities=18% Similarity=0.475 Sum_probs=49.5
Q ss_pred CCCcccCcCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 002234 15 PPKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 72 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dP-------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~~n 72 (949)
.++++.||||++.+.+| +.++|||+||..||.+|+... .+||.||..+...++. |+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~-~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH-PI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEE-EE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcce-ee
Confidence 46788999999999998 889999999999999999874 4999999999887763 54
No 332
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.61 E-value=1.8e-08 Score=80.74 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=42.7
Q ss_pred CCcccCcCccccccCceec--CCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTL--ETGQT-YERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~--~cght-fc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
+++..|+||++-++|+|.+ +|||. ||..|+.+|... +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4667899999999999988 99999 899999999876 458999999875
No 333
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.57 E-value=2.5e-08 Score=79.67 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=42.3
Q ss_pred CcccCcCccccccCceec--CCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTL--ETGQT-YERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~--~cght-fc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
.+..|+||++-++||+++ +|||. ||+.|+.+|...+ ..||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 456799999999999988 99998 9999999988764 589999998753
No 334
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=5.4e-08 Score=78.88 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=42.9
Q ss_pred CCCCCCcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002234 12 KHTPPKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSST 66 (949)
Q Consensus 12 ~~~~~~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~~~ 66 (949)
+..-.++..|+||++...+||.++|||. ||..|+.. ...||.||+.+...
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 3345678899999999999999999999 99999984 35899999988753
No 335
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.56 E-value=2.7e-06 Score=93.79 Aligned_cols=210 Identities=11% Similarity=0.019 Sum_probs=128.0
Q ss_pred eeeEEecccCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 701 HLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 701 ~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
+.+..+. .....++++++|+.+++... ++.++||.+.+++...+...... . .
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~-~---------------~------- 63 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGN-A---------------I------- 63 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSS-C---------------C-------
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccC-c---------------c-------
Confidence 4454443 67899999999999988742 34366666655532211100000 0 0
Q ss_pred EecCeEEEecCCCCceEEEEeC-CEEEEEEC------CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCC-ceE
Q 002234 779 LRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQ------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVY 850 (949)
Q Consensus 779 ~~~g~i~~~~~~~~v~~v~~~~-~~l~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~ 850 (949)
.+-..+..+++++ +.|++... ++.|.+||+.+++....+........+...++.++++++ +..
T Consensus 64 ---------~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 64 ---------ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp ---------CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred ---------cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEE
Confidence 0112344455543 44555443 578999999998866544322222233456789999964 555
Q ss_pred EEEEE---CCCCEEEEEECCCCeeEEeecC------------------------------CCcEEEEEEcCC--EEEEEE
Q 002234 851 TASTS---LDGAAVKMWSTSNYNMVGSLPT------------------------------LSEVRAMVVSSE--LVYLGC 895 (949)
Q Consensus 851 l~s~s---~Dg~~I~iwd~~~~~~~~~~~~------------------------------~~~v~~l~~s~d--~l~sgs 895 (949)
.++-. .+ ..|.+||..+++..+.+.. ...+..++++|| .++.+.
T Consensus 135 yvtd~~~~~~-~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 135 YISDPAPDDK-AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEECCSGGG-CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEcCccCCC-CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 45544 44 4999999988776654431 023688999998 577776
Q ss_pred CCC-eEEEEECC---CCc-----E---EEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 896 KGG-TVEIWDQK---RQI-----R---IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 896 ~dg-~I~vwd~~---~~~-----~---~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.++ .++.++.. .+. . +..+ ++.+....++++++|.++++...++.|.+||.
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 665 55555532 110 0 1111 33445778999999999999989999999986
No 336
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.49 E-value=8.4e-08 Score=84.99 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=40.6
Q ss_pred CcccCcCccccccCc------------------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDP------------------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~dP------------------v~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
++-.|+||++.|.+| +.++|||.|++.||..|+.. +.+||.||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 456799999999987 34699999999999999987 459999999864
No 337
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.48 E-value=2.3e-08 Score=83.83 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=41.3
Q ss_pred CCCcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSST 66 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~~~ 66 (949)
+.++..|+||++.+.+||.++|||. ||+.|+.+| ..||.||+++...
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 4467789999999999999999999 999999876 3899999988753
No 338
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.47 E-value=2.2e-05 Score=94.68 Aligned_cols=274 Identities=10% Similarity=0.105 Sum_probs=155.4
Q ss_pred cccccEEEEecCCCCeEEEecCCc--eeeecC-CC---CceE-EEEEeCCEEEEEeC------CCcEEEEecCCCceeee
Q 002234 637 AFEMVKVLSNGHDSSADFWNHREL--VHVDSS-EN---GKVL-SIACFRDKIFSGHS------DGTIKVWTGRGSILHLI 703 (949)
Q Consensus 637 ~~~~~~l~s~s~dg~I~vWd~~~~--~~~~~~-h~---~~V~-~l~~s~d~lasgs~------Dg~I~vWd~~t~~~~~i 703 (949)
..++.+++.++.|+.+..+|..+. +..... .. ..+. ......+.++.+.. +|.|..+|..+| +.+
T Consensus 114 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG--~~~ 191 (668)
T 1kv9_A 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG--KLA 191 (668)
T ss_dssp EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--CEE
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC--cEE
Confidence 345678888888999999998642 222211 10 1111 11223456666543 589999999999 666
Q ss_pred EEeccc-------------------------------CCCEEEEEEecCCCEEEEEeCCCc-------------------
Q 002234 704 QQIREH-------------------------------TKAVTGLAILQSGEMLYSGSLDKT------------------- 733 (949)
Q Consensus 704 ~~l~~H-------------------------------~~~V~~v~fspdg~~L~Sgs~Dg~------------------- 733 (949)
..+... ......+++.|++..++.++.++.
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 665321 011124688888888988887763
Q ss_pred EEEEECCCCeeEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcE
Q 002234 734 ARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 812 (949)
Q Consensus 734 I~vWd~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I 812 (949)
|..+|..+|+..-.... .+...-......+....+..+|+. + ..++.++.+|.+
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~----------~---------------~~v~~~~~~G~l 326 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP----------R---------------KVLMQAPKNGFF 326 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE----------E---------------EEEEECCTTSEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE----------E---------------EEEEEECCCCEE
Confidence 88999999863322221 111110000000000001112210 0 127778889999
Q ss_pred EEEECCCCceeeeecccc-----cccC-CCC------------------------CEEEEEEeCCceEEEEE--------
Q 002234 813 QEIDLATGTFATIQTGHR-----KLLG-KAN------------------------PVHALQVHNGLVYTAST-------- 854 (949)
Q Consensus 813 ~iwd~~~~~~~~~~~~~~-----~~~~-h~~------------------------~V~~l~~~~~~~~l~s~-------- 854 (949)
+++|..+|+.+....... .+.. ... .-..++++|+...+...
T Consensus 327 ~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~ 406 (668)
T 1kv9_A 327 YVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY 406 (668)
T ss_dssp EEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred EEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEe
Confidence 999998888763221100 0000 000 01125666653333221
Q ss_pred ----------------------------ECCCCEEEEEECCCCeeEEeecCCCcEE--EEEEcCCEEEEEECCCeEEEEE
Q 002234 855 ----------------------------SLDGAAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWD 904 (949)
Q Consensus 855 ----------------------------s~Dg~~I~iwd~~~~~~~~~~~~~~~v~--~l~~s~d~l~sgs~dg~I~vwd 904 (949)
..+ +.|..||..+++.+..++...... .+....+.++.|+.||.++.||
T Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~-g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 407 RNEGKDFVTRKAFNTAAGFADATDVPAAVVS-GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE-EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred eeeccccccccccccCccccccCCCCCCCcc-ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhh
Confidence 012 389999999999988877443332 3555667899999999999999
Q ss_pred CCCCcEEEEeccccccceeEEEEeCCCC-EEEEEe
Q 002234 905 QKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT 938 (949)
Q Consensus 905 ~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs 938 (949)
.++++.+..+..+..-.-.-+.+..+|+ +++.++
T Consensus 486 ~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 486 ADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999988654322223445556776 444443
No 339
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.47 E-value=0.00099 Score=82.12 Aligned_cols=292 Identities=9% Similarity=0.138 Sum_probs=176.6
Q ss_pred EEEEecCCCCeEEEecCCc-eeee--cCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec-----ccCCC
Q 002234 642 KVLSNGHDSSADFWNHREL-VHVD--SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-----EHTKA 712 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~~-~~~~--~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~-----~H~~~ 712 (949)
.+..+..++-+..|+..+. .... ..+...|.++...++ .+..|+.++-+..||..++.......-. -....
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNY 264 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence 4445665555778887532 1111 123567888888765 7777776656999999887322211100 02356
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec------CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 713 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
|.++...++|.+.+ |+.+| |.+||..++......... ....|.++. ..++|. +-+++.++-+..
T Consensus 265 i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-------~D~~g~-lWigt~~~Gl~~ 334 (795)
T 4a2l_A 265 IRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF-------MDSQGG-MWLGTYFGGLNY 334 (795)
T ss_dssp EEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE-------ECTTSC-EEEEESSSCEEE
T ss_pred EEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE-------EeCCcC-EEEEECCCCeEE
Confidence 99999988887554 44554 889999887544332211 123455554 444444 344444443433
Q ss_pred ec----------C--------CCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccccc--cCCCCCEEEEEEe
Q 002234 787 LN----------S--------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKL--LGKANPVHALQVH 845 (949)
Q Consensus 787 ~~----------~--------~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~ 845 (949)
++ . ...|.++..++ +.+.+|+.++-|..||..++............ .-....|.++...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 32 1 23477777764 67999999989999999887654322110000 0123679999998
Q ss_pred CCceEEEEEECCCCEEEEEECCCCeeEEeec-----CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEecc---
Q 002234 846 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT--- 916 (949)
Q Consensus 846 ~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~~--- 916 (949)
+++..+..++.++ -|..||..+++...... ....|.++...++ .+..|+. +.+.+||..+++.......
T Consensus 415 ~~g~~lWigt~~~-Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 415 EKKSLVYIGTHAG-GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp TTTTEEEEEETTT-EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTC
T ss_pred CCCCEEEEEeCcC-ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccc
Confidence 8776222334443 69999988776443221 2457889988876 7888887 4588999887754332211
Q ss_pred --ccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 917 --GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 917 --~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
-+...|.++...++|.+.+.. .+ -|..||
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~ 523 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFK 523 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEE
T ss_pred cccCCceEEEEEECCCCCEEEEe-CC-ceEEEe
Confidence 123578999999988866544 44 466665
No 340
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.47 E-value=1.4e-07 Score=105.47 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=93.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 721 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 721 dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
++..+++++.||.|+.||..+|+..-.... +.+.+.. +..++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p-------~~~~g~--------------------------- 50 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVP-------THVEEP--------------------------- 50 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC------------C---------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecc-------eEcCCC---------------------------
Confidence 578999999999999999999863222111 2222221 222222
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCCCc
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE 880 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~ 880 (949)
.+++++.||.|+.||..+|+..........-.....++. ..++ .+++++.|+ .|..||..+|+.+..+.....
T Consensus 51 -~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~----~~~~-~v~~g~~dg-~v~a~D~~tG~~~w~~~~~~~ 123 (369)
T 2hz6_A 51 -AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR----SSDG-ILYMGKKQD-IWYVIDLLTGEKQQTLSSAFA 123 (369)
T ss_dssp -CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC----------CCCCEEEE-EEEEECCC-------------
T ss_pred -EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE----ecCC-EEEEEeCCC-EEEEEECCCCcEEEEecCCCc
Confidence 255667999999999999887644321110000112211 1222 334445565 999999999999888774332
Q ss_pred EEEEEEcC--CEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCC---CEEEEEeCCCcEEEEeC
Q 002234 881 VRAMVVSS--ELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE---EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 881 v~~l~~s~--d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg---~~L~sgs~Dg~I~iWdl 948 (949)
+ .++| +.+++++.|+.|+.||..+|+.+..+.. + ......++++. ..+++++.||.|..||.
T Consensus 124 ~---~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 124 D---SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEE-E--EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred c---cccccCCEEEEEecCCEEEEEECCCCCEEEeEec-c--cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 2 2333 3788999999999999999987776631 1 12333444432 56777889999999986
No 341
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.45 E-value=1.4e-06 Score=100.26 Aligned_cols=237 Identities=10% Similarity=0.032 Sum_probs=152.8
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeE--EecccCCCEEEEEE-e-cCCCEEEEEe------------------CCCcEEEE
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQ--QIREHTKAVTGLAI-L-QSGEMLYSGS------------------LDKTARVW 737 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~--~l~~H~~~V~~v~f-s-pdg~~L~Sgs------------------~Dg~I~vW 737 (949)
.+++...++.|.+.|+.+. ++.. ++. .......+++ + |++++++.++ .++.+.++
T Consensus 104 lfVnd~~~~rVavIdl~t~--~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVM--KCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCc--eEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 3444455677999999998 5555 442 2345788888 5 8999998885 24679999
Q ss_pred ECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE-Eec--CCCCceEEEEe-----------CCEE
Q 002234 738 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK-LLN--SSKYPKCLALV-----------QGKV 803 (949)
Q Consensus 738 d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~-~~~--~~~~v~~v~~~-----------~~~l 803 (949)
|..+.+. .......+. +..+.++|+|+++.+.+.+..-- ..+ .......+.+. +...
T Consensus 181 D~~t~~v--~~qI~Vgg~-------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 181 DADKWEV--AWQVLVSGN-------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp ETTTTEE--EEEEEESSC-------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred ECCCCeE--EEEEEeCCC-------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 9998752 222111112 23344999999999988764210 000 00111111110 1112
Q ss_pred EEEECCCcEEEEECCC--Cce-eeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe----------
Q 002234 804 YCGCQDGAIQEIDLAT--GTF-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---------- 870 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~--~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~---------- 870 (949)
.. +.|.+.|.++ ++. +..... .....++.++||+.+++.++....+|.++|+.+.+
T Consensus 252 ~i----~~V~VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 252 EL----NGVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp EE----TTEEEEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred EE----CcEEEEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 22 5699999998 544 222111 13466899999999998887666799999998653
Q ss_pred --eEEeecCCCcEEEEEEcCC-EEE-EEECCCeEEEEECCC----------CcEEEEecc----ccccceeEEEEeCCCC
Q 002234 871 --MVGSLPTLSEVRAMVVSSE-LVY-LGCKGGTVEIWDQKR----------QIRIETLQT----GTSGKVQCMALDDNEE 932 (949)
Q Consensus 871 --~~~~~~~~~~v~~l~~s~d-~l~-sgs~dg~I~vwd~~~----------~~~~~~l~~----~h~~~I~~l~~spdg~ 932 (949)
......-......++|+|| +++ +.--|+.|.+||+.+ .+.+.++.. +|...-.++.++|||+
T Consensus 321 ~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 321 SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp GGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred cceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 4556666788999999999 444 445789999999987 567777753 2322223446789999
Q ss_pred EEEEEeC
Q 002234 933 FLVIGTS 939 (949)
Q Consensus 933 ~L~sgs~ 939 (949)
+|+++..
T Consensus 401 ~l~~~Nk 407 (595)
T 1fwx_A 401 WLVCLSK 407 (595)
T ss_dssp EEEEEES
T ss_pred EEEEcCC
Confidence 9998864
No 342
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.43 E-value=4.6e-05 Score=89.86 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=56.2
Q ss_pred CEEEEEECCCCeeEEeecCCCcEEE--EEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEE
Q 002234 859 AAVKMWSTSNYNMVGSLPTLSEVRA--MVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 936 (949)
Q Consensus 859 ~~I~iwd~~~~~~~~~~~~~~~v~~--l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~s 936 (949)
+.|..||..+++.+.++.....+.+ +....+.++.++.||.++.||.++++.+.++..++...-.-+.+..+|+.++.
T Consensus 444 g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3899999999999888774433322 23345688889999999999999999999987554332334456678865543
No 343
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.42 E-value=3.8e-05 Score=80.35 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=128.2
Q ss_pred eeeEEecccCC--CEEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 701 HLIQQIREHTK--AVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 701 ~~i~~l~~H~~--~V~~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
+.+.++ .|.. ....+.|++|+.+.++.+. +++|+++|+.+++....... ......
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fg------------------ 68 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFG------------------ 68 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCE------------------
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcce------------------
Confidence 455666 3553 3689999998765555553 68999999999863222111 111111
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
..+++.++.++.+ -.++.+.++|..+.+.+..+... .++ . ..++. |+..+..+.
T Consensus 69 -----------------eGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g-~glt~--Dg~~l~vs~ 123 (266)
T 2iwa_A 69 -----------------EGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--G-WGLAT--DGKILYGSD 123 (266)
T ss_dssp -----------------EEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--C-CEEEE--CSSSEEEEC
T ss_pred -----------------EEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--e-EEEEE--CCCEEEEEC
Confidence 1122223344444 35789999999999887544311 111 1 22433 444333333
Q ss_pred CCCCEEEEEECCCCeeEEeecCC------CcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEecccc----------
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPTL------SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------- 918 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~~------~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h---------- 918 (949)
.+ +.|.++|..+.+.+.++.-. ..++.+.+....+++.. .++.|.+.|..+++.+..+..+.
T Consensus 124 gs-~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~ 202 (266)
T 2iwa_A 124 GT-SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF 202 (266)
T ss_dssp SS-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC
T ss_pred CC-CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc
Confidence 44 49999999999988888732 24678888855666665 47899999999999999986421
Q ss_pred --ccceeEEEEeCCCCEE-EEEeCCCcEEEEeC
Q 002234 919 --SGKVQCMALDDNEEFL-VIGTSDGRIQAWGL 948 (949)
Q Consensus 919 --~~~I~~l~~spdg~~L-~sgs~Dg~I~iWdl 948 (949)
....+.++|+|+++.+ +++...++|.+-++
T Consensus 203 ~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 203 RDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 1256899999998655 55556788777654
No 344
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.41 E-value=0.00074 Score=83.23 Aligned_cols=287 Identities=10% Similarity=0.106 Sum_probs=177.0
Q ss_pred EEEEecCCCCeEEEecCCc-eeeec-C-------CCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec----
Q 002234 642 KVLSNGHDSSADFWNHREL-VHVDS-S-------ENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---- 707 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~~-~~~~~-~-------h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~---- 707 (949)
.+..+..++-+..||..+. ..... . ....|.++...++ .|..|+.+ -|.+||..++.........
T Consensus 227 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~ 305 (795)
T 4a2l_A 227 RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENG 305 (795)
T ss_dssp EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTT
T ss_pred CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCC
Confidence 3444554444778887642 22211 1 2467999998875 77777776 5889999887322221110
Q ss_pred -ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeec-----CCCceeeeeeccceEEEEeCCCEEEEEEec
Q 002234 708 -EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-----IKDQIQNLAVSNSILCFIPQGAGIKVHLRN 781 (949)
Q Consensus 708 -~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~ 781 (949)
-....|.++...++|. |..|+.++-|..|+..++......... ....|.++. ..++|. +-++..+
T Consensus 306 ~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~-------~d~~g~-lWiGt~~ 376 (795)
T 4a2l_A 306 SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIV-------EDKDKN-LWIGTND 376 (795)
T ss_dssp SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEE-------ECTTSC-EEEEESS
T ss_pred CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEE-------ECCCCC-EEEEECC
Confidence 1235799999998887 556777677999988765433322211 123345543 333343 3344444
Q ss_pred CeEEEecC--------------------CCCceEEEEe-CCE-EEEEECCCcEEEEECCCCceeeeecccccccCCCCCE
Q 002234 782 GKTKLLNS--------------------SKYPKCLALV-QGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 839 (949)
Q Consensus 782 g~i~~~~~--------------------~~~v~~v~~~-~~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 839 (949)
+-+..++. ...|.++... ++. +.+|+.++-+..||..+++......... ......|
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~--~l~~~~v 454 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS--QLVNENV 454 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS--CCSCSCE
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC--CcCCCee
Confidence 33333321 2346777775 466 9999998889999999887543321100 1234679
Q ss_pred EEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-------CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEE
Q 002234 840 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRI 911 (949)
Q Consensus 840 ~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~ 911 (949)
.++...+++.+.+++. + -+..||..+++...... ....|.++...++ .+..|+. +-+..||..+++.
T Consensus 455 ~~i~~d~~g~lwigt~-~--Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~- 529 (795)
T 4a2l_A 455 YAILPDGEGNLWLGTL-S--ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI- 529 (795)
T ss_dssp EEEEECSSSCEEEEES-S--CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-
T ss_pred EEEEECCCCCEEEEec-C--ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-
Confidence 9999988777665553 4 48899988776543321 2356889988877 6888887 5688999887765
Q ss_pred EEec------cccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 912 ETLQ------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 912 ~~l~------~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+. ......|.++..+++|.+.++ +.+ -|..||.
T Consensus 530 -~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~ 569 (795)
T 4a2l_A 530 -QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNE 569 (795)
T ss_dssp -EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEET
T ss_pred -EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECC
Confidence 331 123347899999999886554 444 4666663
No 345
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.39 E-value=5.9e-05 Score=90.88 Aligned_cols=289 Identities=13% Similarity=0.110 Sum_probs=154.6
Q ss_pred ccEEEEecCCCCeEEEecCCce--eeecCCCC----------c-eEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEe
Q 002234 640 MVKVLSNGHDSSADFWNHRELV--HVDSSENG----------K-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 706 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~--~~~~~h~~----------~-V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l 706 (949)
+..++.++.++.|.-+|..+.. ........ . -..+++..+.++.++.||.|..+|..+| +.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG--~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG--KAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTC--CEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCC--CEeeee
Confidence 4455555566677767765321 11111110 0 1234556678999999999999999999 666665
Q ss_pred cccC-CCEEEEEEec--CCCEEEEEeC------CCcEEEEECCCCeeEEEEeecCCCceee-----eeeccceEEEEeCC
Q 002234 707 REHT-KAVTGLAILQ--SGEMLYSGSL------DKTARVWSIGNEEIHCVQVHDIKDQIQN-----LAVSNSILCFIPQG 772 (949)
Q Consensus 707 ~~H~-~~V~~v~fsp--dg~~L~Sgs~------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~-----l~~~~~~~~fsp~g 772 (949)
.... .....+..+| .+..++.++. +|.|..+|..+|+..-........+... +...... + ++
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~--~--~g 219 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT--W--QG 219 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT--C--CS
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc--C--Cc
Confidence 4321 0000011111 1334555543 5899999999997322221100000000 0000000 0 00
Q ss_pred CEEEEEEecCeEEEec---CCCCceEEEEeC--CEEEEEECCC-------------------cEEEEECCCCceeeeecc
Q 002234 773 AGIKVHLRNGKTKLLN---SSKYPKCLALVQ--GKVYCGCQDG-------------------AIQEIDLATGTFATIQTG 828 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~---~~~~v~~v~~~~--~~l~sgs~Dg-------------------~I~iwd~~~~~~~~~~~~ 828 (949)
. .+|. .......+++++ +.++.++.++ .|..+|..+|+....+..
T Consensus 220 ~-----------~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~ 288 (668)
T 1kv9_A 220 D-----------QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV 288 (668)
T ss_dssp S-----------CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred c-----------ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence 0 0000 000011223332 4455555544 499999999998865432
Q ss_pred cc-cccC--CCCCEEEEEEeCCce---EEEEEECCCCEEEEEECCCCeeEEeecCCC-------------c---------
Q 002234 829 HR-KLLG--KANPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTLS-------------E--------- 880 (949)
Q Consensus 829 ~~-~~~~--h~~~V~~l~~~~~~~---~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~-------------~--------- 880 (949)
.. .... ...+.....+..++. .++.++.+| .+.++|..+|+.+...+... +
T Consensus 289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNG-FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCC-EEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence 10 0000 113333333333443 567777776 99999999999874432110 0
Q ss_pred ---------------EEEEEEcCC--EEEEE------------------------------------ECCCeEEEEECCC
Q 002234 881 ---------------VRAMVVSSE--LVYLG------------------------------------CKGGTVEIWDQKR 907 (949)
Q Consensus 881 ---------------v~~l~~s~d--~l~sg------------------------------------s~dg~I~vwd~~~ 907 (949)
-..++++|+ .+++. ..+|.|..||..+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 012567776 33331 1238899999999
Q ss_pred CcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 908 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 908 ~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
++.+..... ........+...+.++++++.||.++.||.
T Consensus 448 G~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 448 QKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp TEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence 998888752 234444456667889999999999999986
No 346
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.37 E-value=3.8e-05 Score=85.53 Aligned_cols=240 Identities=12% Similarity=0.050 Sum_probs=141.1
Q ss_pred EEEEEeCCCcEEEEecCCC--ceeeeEEec------cc-CCCEEEEEEecCCCEEEEEeCC------CcEEEEECCCCee
Q 002234 680 KIFSGHSDGTIKVWTGRGS--ILHLIQQIR------EH-TKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEI 744 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~--~~~~i~~l~------~H-~~~V~~v~fspdg~~L~Sgs~D------g~I~vWd~~~~~~ 744 (949)
++++|..+++|.|+|+.+. +.+...++. .+ ...-..+..+|+| +++++..+ |.|.+.|..+++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 6777788999999999754 334555552 11 1244567788999 77777666 7899999998753
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceee
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 824 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~ 824 (949)
. ...........+ +-.+.|+|+++.+++..|..-..+.. .+....+. +-.+++|.+||+.+++...
T Consensus 177 ~--~~~~~~~~~~~~---~Yd~~~~p~~~~mvsS~wg~p~~~~~--------g~~~~~~~-~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 177 L--GKWEIDRGDQYL---AYDFWWNLPNEVLVSSEWAVPNTIED--------GLKLEHLK-DRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp E--EECCSBCTTCCC---CCCEEEETTTTEEEECBCCCHHHHTT--------CCCTTTHH-HHSCCEEEEEETTTTEEEE
T ss_pred E--EEEccCCCCccc---cceEEECCCCCEEEEccCcCcccccc--------ccchhhhh-hccCCEEEEEECCCCcEee
Confidence 2 222211110000 00122788888654443210000000 00000000 0347899999999887664
Q ss_pred eecccccccCCCCCEEEEEE--eCCceEEEEEEC-----CCCEEEEEECCCCee--EEee--cC----------------
Q 002234 825 IQTGHRKLLGKANPVHALQV--HNGLVYTASTSL-----DGAAVKMWSTSNYNM--VGSL--PT---------------- 877 (949)
Q Consensus 825 ~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~-----Dg~~I~iwd~~~~~~--~~~~--~~---------------- 877 (949)
.+... ........+.| +|++.+...++. .+++|.+|....+.. .+.+ ..
T Consensus 243 tI~vg----~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 243 SLTLG----EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEESC----TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred EEecC----CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 33211 01123445555 899988887776 555887776554321 1111 10
Q ss_pred -CCcEEEEEEcCC--EEEEEEC-CCeEEEEECC---CCcEEEEeccccc-------------cceeEEEEeCCCCEEEEE
Q 002234 878 -LSEVRAMVVSSE--LVYLGCK-GGTVEIWDQK---RQIRIETLQTGTS-------------GKVQCMALDDNEEFLVIG 937 (949)
Q Consensus 878 -~~~v~~l~~s~d--~l~sgs~-dg~I~vwd~~---~~~~~~~l~~~h~-------------~~I~~l~~spdg~~L~sg 937 (949)
......+.+|+| +++++.. .+.|.+||+. +.+.+..+..+-. +.-..+.++|||++|+++
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 245678999998 6776664 6899999985 3456666654411 135889999999999998
Q ss_pred e
Q 002234 938 T 938 (949)
Q Consensus 938 s 938 (949)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
No 347
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.36 E-value=6.2e-08 Score=104.85 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCCcccCcCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 65 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~cght-fc~~ci~~~~~~~~~~CP~c~~~~~~ 65 (949)
+.+++.||||++.+.+||+++|||+ ||+.|+..| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3467899999999999999999999 999999987 489999998864
No 348
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.35 E-value=7e-05 Score=77.43 Aligned_cols=190 Identities=9% Similarity=0.045 Sum_probs=123.3
Q ss_pred eeeEEecccCCC--EEEEEEecCCCEEEEEeCCC--cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 701 HLIQQIREHTKA--VTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 701 ~~i~~l~~H~~~--V~~v~fspdg~~L~Sgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
+.+.++ .|... ...+.|+ ++.+..+.+.+| .|+++|+.+++....... ........ ..+++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeG-------it~~g---- 96 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEG-------ISDWK---- 96 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEE-------EEEET----
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeE-------EEEeC----
Confidence 455666 45443 5788998 777778888876 899999999963322211 12211111 22223
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
++++... .++.+.+||..+.+.+..+.. .++. ..+++ ++..+..+.
T Consensus 97 ------------------------~~ly~ltw~~~~v~v~D~~t~~~~~ti~~----~~eG---~glt~--dg~~L~~Sd 143 (262)
T 3nol_A 97 ------------------------DKIVGLTWKNGLGFVWNIRNLRQVRSFNY----DGEG---WGLTH--NDQYLIMSD 143 (262)
T ss_dssp ------------------------TEEEEEESSSSEEEEEETTTCCEEEEEEC----SSCC---CCEEE--CSSCEEECC
T ss_pred ------------------------CEEEEEEeeCCEEEEEECccCcEEEEEEC----CCCc---eEEec--CCCEEEEEC
Confidence 3444443 478999999999998865432 1211 23333 333333333
Q ss_pred CCCCEEEEEECCCCeeEEeecC---C---CcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEecccc----------
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPT---L---SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------- 918 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~---~---~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h---------- 918 (949)
.+ ..|.++|..+.+.+.++.- . ..++.+.+....+++.. .++.|.+.|..+++.+..+....
T Consensus 144 Gs-~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~ 222 (262)
T 3nol_A 144 GT-PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS 222 (262)
T ss_dssp SS-SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred CC-CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence 34 3899999999998888763 2 33556777766777766 57899999999999998885320
Q ss_pred -ccceeEEEEeCCCCEEEEEeC
Q 002234 919 -SGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 919 -~~~I~~l~~spdg~~L~sgs~ 939 (949)
.+..+.|+|+|+++.|+..+.
T Consensus 223 ~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 223 PIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCCCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEECC
Confidence 125689999999887777664
No 349
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=0.00019 Score=78.05 Aligned_cols=254 Identities=7% Similarity=-0.041 Sum_probs=136.6
Q ss_pred ceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEec-----------------ccCCCEEEEEEec-CCCEEEEEe
Q 002234 670 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-----------------EHTKAVTGLAILQ-SGEMLYSGS 729 (949)
Q Consensus 670 ~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~-----------------~H~~~V~~v~fsp-dg~~L~Sgs 729 (949)
...+++|.++ +++++..++.|..||..++.......-. ........+++.+ +|+ |+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 3456778775 5888888999999998876322221100 0123578999998 565 55554
Q ss_pred CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe-CCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC
Q 002234 730 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 808 (949)
Q Consensus 730 ~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp-~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~ 808 (949)
..+.|..+|..++....+......... ..+..+++.+ +|+..++ ..... +...... ..++.+..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~----~~p~~i~~d~~~G~l~v~-d~~~~---~~~~~~~-------~~~~~~~~ 163 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPF----KWLYAVTVDQRTGIVYFT-DVSTL---YDDRGVQ-------QIMDTSDK 163 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEEC----SCEEEEEECTTTCCEEEE-ESCSS---CCTTCHH-------HHHHHTCC
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcc----cccceEEEecCCCEEEEE-CCccc---ccccccc-------eehcccCC
Confidence 445588888876643332211110000 0112233555 5543211 11100 0000000 00000112
Q ss_pred CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe--eEEee-cCCCcEEEEE
Q 002234 809 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSL-PTLSEVRAMV 885 (949)
Q Consensus 809 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~--~~~~~-~~~~~v~~l~ 885 (949)
+|.|..||..+++....... ....+.+++++++.++..+...++.|..|++.... ....+ .... ...++
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKE-------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEE-------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred CceEEEEeCCCCEEEEeccC-------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 46688888876654322111 12346799999987554443333489999987421 11111 1223 78899
Q ss_pred EcCC-EEEEEEC-----------CCeEEEEECCCCcEEEEecccc---ccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 886 VSSE-LVYLGCK-----------GGTVEIWDQKRQIRIETLQTGT---SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 886 ~s~d-~l~sgs~-----------dg~I~vwd~~~~~~~~~l~~~h---~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
++++ .++++.. .+.|..+|. .++.+..+.... ...++++++ .++++.++...++.|.+++++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 9887 4444432 467888987 477777664322 235777777 466666666678889988863
No 350
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.30 E-value=0.00016 Score=85.33 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=86.0
Q ss_pred CcEEEEECCCCceeeeecccc----cccCCCCCEEEEEEeCCce---EEEEEECCCCEEEEEECCCCeeEEeecCCC---
Q 002234 810 GAIQEIDLATGTFATIQTGHR----KLLGKANPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTLS--- 879 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~----~~~~h~~~V~~l~~~~~~~---~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~--- 879 (949)
+.|..+|..+|+....+.... .+.....++. +....++. .++.++.+| .+.++|..+++.+..++...
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNG-ILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCc-EEEEEECCCCCEEeeecccCCcc
Confidence 368999999999876543211 0011223332 22234563 456666675 99999999999887654211
Q ss_pred -----------cE--------------------------EEEEEcCC--EEEEEE-------------------------
Q 002234 880 -----------EV--------------------------RAMVVSSE--LVYLGC------------------------- 895 (949)
Q Consensus 880 -----------~v--------------------------~~l~~s~d--~l~sgs------------------------- 895 (949)
++ ..++++|+ .+++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 11 23567776 454443
Q ss_pred ------------CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 896 ------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 896 ------------~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
.+|.|..||..+++.+.++..+ ..+.+..+...+..++.++.||.|+.||.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 3578999999999988887532 23444334445677888999999999986
No 351
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.29 E-value=0.00021 Score=84.34 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=56.0
Q ss_pred CEEEEEECCCCeeEEeecCCCcEE--EEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEE
Q 002234 859 AAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 935 (949)
Q Consensus 859 ~~I~iwd~~~~~~~~~~~~~~~v~--~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~ 935 (949)
+.|..||+.+++.+.+.+....+. .+....+.++.|+.||.++.||.++|+.+..++.+....-.-+.|..||+..+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 389999999999988776433322 23445568888999999999999999999998654332223467778886443
No 352
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.28 E-value=0.00019 Score=84.65 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=56.9
Q ss_pred CEEEEEECCCCeeEEeecCCCcEE--EEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EEE
Q 002234 859 AAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLV 935 (949)
Q Consensus 859 ~~I~iwd~~~~~~~~~~~~~~~v~--~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~ 935 (949)
+.|..||+.+++.+...+...+.. .+....+.++.++.||.++.||.++|+.+.+++.+......-+.+..||+ |++
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~ 532 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA 532 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEE
Confidence 389999999999988876332222 24455678888999999999999999999988654433334466777886 444
Q ss_pred E
Q 002234 936 I 936 (949)
Q Consensus 936 s 936 (949)
+
T Consensus 533 ~ 533 (599)
T 1w6s_A 533 I 533 (599)
T ss_dssp E
T ss_pred E
Confidence 3
No 353
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.27 E-value=0.00033 Score=73.21 Aligned_cols=194 Identities=10% Similarity=0.032 Sum_probs=123.9
Q ss_pred ceEEEEEeCC-EEEEEe-C--CCcEEEEecCCCceeeeEEecc-cCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCe
Q 002234 670 KVLSIACFRD-KIFSGH-S--DGTIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE 743 (949)
Q Consensus 670 ~V~~l~~s~d-~lasgs-~--Dg~I~vWd~~t~~~~~i~~l~~-H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~~~~ 743 (949)
....+.|+++ .|+.++ . +++|++.|..++ +.+..+.- .......+++. |+.|+.+. .++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 4689999994 444443 2 689999999999 56665531 11122344554 55555554 57899999999875
Q ss_pred eEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCcee
Q 002234 744 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 823 (949)
Q Consensus 744 ~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~ 823 (949)
. +...... . +....+++||+. ++++..++.|.++|..+.+..
T Consensus 98 v--~~~i~~g-~-------~~g~glt~Dg~~----------------------------l~vs~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 98 N--IKNFTHQ-M-------KDGWGLATDGKI----------------------------LYGSDGTSILYEIDPHTFKLI 139 (266)
T ss_dssp E--EEEEECC-S-------SSCCEEEECSSS----------------------------EEEECSSSEEEEECTTTCCEE
T ss_pred E--EEEEECC-C-------CCeEEEEECCCE----------------------------EEEECCCCeEEEEECCCCcEE
Confidence 2 2222111 0 111225566654 555556789999999998876
Q ss_pred eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecCC--------------CcEEEEEEcCC
Q 002234 824 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------SEVRAMVVSSE 889 (949)
Q Consensus 824 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~d 889 (949)
........ ...-..++.+.|. ++...+....+ ..|.+-|..+++.+..+.-. ...+.++++|+
T Consensus 140 ~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~-~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~ 216 (266)
T 2iwa_A 140 KKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQT-DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE 216 (266)
T ss_dssp EEEECEET-TEECCCEEEEEEE-TTEEEEEETTS-SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred EEEEECCC-CcccccceeEEEE-CCEEEEecCCC-CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence 44331110 0011246788888 55544544344 49999999999998888632 35689999987
Q ss_pred ---EEEEEECCCeEEEEECCCC
Q 002234 890 ---LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 890 ---~l~sgs~dg~I~vwd~~~~ 908 (949)
.++++...+.+.+.++...
T Consensus 217 ~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 217 NKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTEEEEEETTCSEEEEEEEEEC
T ss_pred CCEEEEECCCCCeEEEEEEecc
Confidence 5666667889998887554
No 354
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.26 E-value=0.00018 Score=80.04 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=122.4
Q ss_pred cCCCEEEE-EeCCCcEEEEECCCC--eeEEEEeecCCCcee---eeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCc
Q 002234 720 QSGEMLYS-GSLDKTARVWSIGNE--EIHCVQVHDIKDQIQ---NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 793 (949)
Q Consensus 720 pdg~~L~S-gs~Dg~I~vWd~~~~--~~~~~~~~~~~~~v~---~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v 793 (949)
+++++|+. +-.+++|.++|+.+. +++.....+. ..+. .. ..+..+..+|+| .+++...+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~-~~~~~~~g~-s~Ph~~~~~pdG-i~Vs~~g~~----------- 158 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP-EEVKKVSGY-SRLHTVHCGPDA-IYISALGNE----------- 158 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH-HHHHHHHCE-EEEEEEEECSSC-EEEEEEEET-----------
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech-hhcccccCC-CcccceeECCCe-EEEEcCCCc-----------
Confidence 77777665 555889999999754 2333333310 0000 00 012233367777 322111110
Q ss_pred eEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE------------------
Q 002234 794 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS------------------ 855 (949)
Q Consensus 794 ~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------------ 855 (949)
.|...|.|.++|..+++.+....... +...--+.+.|+|++..+++..
T Consensus 159 -----------~g~~~g~v~vlD~~T~~v~~~~~~~~---~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 159 -----------EGEGPGGILMLDHYSFEPLGKWEIDR---GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp -----------TSCSCCEEEEECTTTCCEEEECCSBC---TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred -----------CCCCCCeEEEEECCCCeEEEEEccCC---CCccccceEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence 01234789999999999885443211 1112234578899999888875
Q ss_pred CCCCEEEEEECCCCeeEEeecCC---CcEEEEEE--cCC--EEEEEE------CCCeEEEEECCCCc--EEEEe--ccc-
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVV--SSE--LVYLGC------KGGTVEIWDQKRQI--RIETL--QTG- 917 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~--s~d--~l~sgs------~dg~I~vwd~~~~~--~~~~l--~~~- 917 (949)
..+.+|.+||+.+++.+.++... .....+.| +|+ +.++++ .+++|.+|..+.++ ..+.+ ...
T Consensus 225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~ 304 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP 304 (462)
T ss_dssp HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE
T ss_pred ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcc
Confidence 22459999999999888888743 34556656 888 555555 56788887765543 11111 100
Q ss_pred --------------cccceeEEEEeCCCCEEEEEeC-CCcEEEEeCC
Q 002234 918 --------------TSGKVQCMALDDNEEFLVIGTS-DGRIQAWGLS 949 (949)
Q Consensus 918 --------------h~~~I~~l~~spdg~~L~sgs~-Dg~I~iWdl~ 949 (949)
-......+.+||||++|+++.. .+.|.+||++
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 0235789999999999988875 6899999973
No 355
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00033 Score=71.79 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=123.4
Q ss_pred eeeEEecccC--CCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 701 HLIQQIREHT--KAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 701 ~~i~~l~~H~--~~V~~v~fspdg~~L~Sgs~Dg--~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
+.+.++ .|. .....+.|++ +.+..|.+.+| .|+.+|+.+++..... .......... ..++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--~l~~~~fgeG-------i~~~----- 73 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--EVPPPYFGAG-------IVAW----- 73 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--ECCTTCCEEE-------EEEE-----
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--eCCCCcceeE-------EEEe-----
Confidence 456666 464 3467899986 66677777754 8999999999633222 1122221111 2222
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEE-EECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 855 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 855 (949)
+++++. .-.++.+.+||..+.+.+..+... ++ . ..++.. +..+.++-
T Consensus 74 -----------------------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~----~~--G-wglt~d-g~~L~vSd- 121 (243)
T 3mbr_X 74 -----------------------RDRLIQLTWRNHEGFVYDLATLTPRARFRYP----GE--G-WALTSD-DSHLYMSD- 121 (243)
T ss_dssp -----------------------TTEEEEEESSSSEEEEEETTTTEEEEEEECS----SC--C-CEEEEC-SSCEEEEC-
T ss_pred -----------------------CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC----CC--c-eEEeeC-CCEEEEEC-
Confidence 233433 345789999999999988654321 21 1 344433 33344443
Q ss_pred CCCCEEEEEECCCCeeEEeecCC------CcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEeccc-----------
Q 002234 856 LDGAAVKMWSTSNYNMVGSLPTL------SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTG----------- 917 (949)
Q Consensus 856 ~Dg~~I~iwd~~~~~~~~~~~~~------~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l~~~----------- 917 (949)
.+ ..|.++|..+.+.+.++.-. ..++.+.+....+++.. .++.|.+.|..+++.+..+..+
T Consensus 122 gs-~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~ 200 (243)
T 3mbr_X 122 GT-AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTD 200 (243)
T ss_dssp SS-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCC
T ss_pred CC-CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccC
Confidence 34 49999999999998888731 45677788777677666 5789999999999999888532
Q ss_pred -cccceeEEEEeCCCCEEEEEeC
Q 002234 918 -TSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 918 -h~~~I~~l~~spdg~~L~sgs~ 939 (949)
..+..+.|+|+|+++.|+..+.
T Consensus 201 ~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 201 STNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTSSCEEEEEEETTTTEEEEEET
T ss_pred CcCCceEEEEEcCCCCEEEEECC
Confidence 1135689999998877766653
No 356
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.1e-06 Score=73.35 Aligned_cols=54 Identities=15% Similarity=0.380 Sum_probs=44.6
Q ss_pred CCCcccCcCccccc--cCceecCCC-----ccccHHHHHHHHhcCC-CCCCCCCCCCCCCCC
Q 002234 15 PPKDFVCPITTHIF--DDPVTLETG-----QTYERRAIQEWIERGN-SSCPITRQKLSSTKL 68 (949)
Q Consensus 15 ~~~~~~Cpic~~~~--~dPv~~~cg-----htfc~~ci~~~~~~~~-~~CP~c~~~~~~~~~ 68 (949)
..++..|+||++-+ .+|++++|+ |.|-+.||.+|+...+ ..||+||..+....-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 34567899999877 579999996 9999999999998643 589999999875543
No 357
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.0025 Score=78.36 Aligned_cols=287 Identities=13% Similarity=0.122 Sum_probs=174.1
Q ss_pred EEEecCCCCeEEEecCCce-eeec--------CCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEE-------
Q 002234 643 VLSNGHDSSADFWNHRELV-HVDS--------SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQ------- 705 (949)
Q Consensus 643 l~s~s~dg~I~vWd~~~~~-~~~~--------~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~------- 705 (949)
|..|..+ -+.+||..+.. ..+. .....|.++...++ .|..|+..+-|.++|..++.......
T Consensus 224 lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~ 302 (781)
T 3v9f_A 224 IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIR 302 (781)
T ss_dssp EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEEC
T ss_pred EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecccccccc
Confidence 3344444 47778875321 1111 12467999998776 88888886678899988773322221
Q ss_pred e-----cccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEee--------cCCCceeeeeeccceEEEEeCC
Q 002234 706 I-----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH--------DIKDQIQNLAVSNSILCFIPQG 772 (949)
Q Consensus 706 l-----~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~fsp~g 772 (949)
. .-....|.++...++|. |..|+.++-|..|+..++........ -....|.++. ..++|
T Consensus 303 ~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~-------~d~~g 374 (781)
T 3v9f_A 303 EGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC-------DDGQG 374 (781)
T ss_dssp BCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE-------ECTTS
T ss_pred CCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE-------EcCCC
Confidence 0 11345799999988886 56677666789999887653333211 0123455554 23333
Q ss_pred CEEEEEEecCeEEEec---------------CCCCceEEEEe-CCEEEEEECCCcEEEEECCCCceeeeecccccccCCC
Q 002234 773 AGIKVHLRNGKTKLLN---------------SSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 836 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~---------------~~~~v~~v~~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 836 (949)
. +.+++.++-+..++ ....|.++... ++.+.+|+.++.+..||..+++....... ....
T Consensus 375 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~----~~~~ 449 (781)
T 3v9f_A 375 K-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE----KNEL 449 (781)
T ss_dssp C-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST----TTCC
T ss_pred C-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC----CCCC
Confidence 3 33344332232222 12457777776 57899999888899999887765422110 1234
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-C-----CCcEEEEEEcCC-EEEEEECCCeEEEEECCCCc
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T-----LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~-----~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~ 909 (949)
..|.++...+++.+.++.. . -|..||..+++...... . ...|.++...++ .+..|+.++-+..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~--Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-A--GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-T--EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-C--ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 6799999988777666543 3 58999988765433222 1 357889988877 78888886568889987765
Q ss_pred EEEEeccc---cccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 910 RIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 910 ~~~~l~~~---h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
. ..+... ....|.++...++|.+.+ |+.+|.|..||.
T Consensus 527 ~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~ 566 (781)
T 3v9f_A 527 V-RKFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSA 566 (781)
T ss_dssp E-EEECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCT
T ss_pred E-EEccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECC
Confidence 3 333211 234789999988887555 444666466653
No 358
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.17 E-value=2.5e-07 Score=82.98 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=0.4
Q ss_pred cccCcCccccccCce-----------------e-cCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 18 DFVCPITTHIFDDPV-----------------T-LETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv-----------------~-~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
+-.|+||++.|.+|. + ++|||.|+..||.+|+.. +.+||.||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 357999999998853 2 499999999999999988 459999998865
No 359
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.16 E-value=0.00055 Score=80.76 Aligned_cols=256 Identities=15% Similarity=0.142 Sum_probs=141.4
Q ss_pred EEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccC--C--CEE-EEEEec---CCC-EEEEEe------CCCcEEEEE
Q 002234 674 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT--K--AVT-GLAILQ---SGE-MLYSGS------LDKTARVWS 738 (949)
Q Consensus 674 l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~--~--~V~-~v~fsp---dg~-~L~Sgs------~Dg~I~vWd 738 (949)
+++..+.++.++.|+.+..+|..+| +.+....... . .+. .-.+.. +|+ .++.++ .+|.|..+|
T Consensus 113 ~a~~~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 113 AAIYGDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARD 190 (582)
T ss_dssp CEEETTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred cEEECCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence 4456678999999999999999999 5665543221 0 111 111111 233 566655 378999999
Q ss_pred CCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec--------------CC--CCceEEEEeC--
Q 002234 739 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--------------SS--KYPKCLALVQ-- 800 (949)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~--------------~~--~~v~~v~~~~-- 800 (949)
..+|+..-.. .. .. .. +.|++........+.....|. .. ..-..+++++
T Consensus 191 ~~tG~~~W~~-~~-~~----~~-------~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~ 257 (582)
T 1flg_A 191 PDTGEEIWMR-PF-VE----GH-------MGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET 257 (582)
T ss_dssp TTTCCEEEEE-ES-ST----TC-------EEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred CCCCCEEeec-CC-Cc----cc-------cccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence 9999733221 11 10 00 122221111110000000000 00 0001233432
Q ss_pred CEEEEEEC--------------------C----CcEEEEECCCCceeeeecccc-c---ccCCCCCEEEEEEe-CCc---
Q 002234 801 GKVYCGCQ--------------------D----GAIQEIDLATGTFATIQTGHR-K---LLGKANPVHALQVH-NGL--- 848 (949)
Q Consensus 801 ~~l~sgs~--------------------D----g~I~iwd~~~~~~~~~~~~~~-~---~~~h~~~V~~l~~~-~~~--- 848 (949)
+.++.++. | +.|..+|..+|+....+.... . +.....++. +... .++
T Consensus 258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~ 336 (582)
T 1flg_A 258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIV 336 (582)
T ss_dssp TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEE
T ss_pred CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEE
Confidence 55666553 2 689999999999886543210 0 011122332 2222 355
Q ss_pred eEEEEEECCCCEEEEEECCCCeeEEeecCCC---cE-------------------------------------------E
Q 002234 849 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS---EV-------------------------------------------R 882 (949)
Q Consensus 849 ~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~---~v-------------------------------------------~ 882 (949)
..++.++.+| .+.++|..+++.+..+.... .. .
T Consensus 337 ~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 415 (582)
T 1flg_A 337 KATAHADRNG-FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN 415 (582)
T ss_dssp EEEEEECTTS-EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred EEEEEECCCc-eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCC
Confidence 4677777776 99999999999886654211 00 1
Q ss_pred EEEEcCC--EEEEEE---------------------------------CCCeEEEEECCCCcEEEEeccccccceeEEEE
Q 002234 883 AMVVSSE--LVYLGC---------------------------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 927 (949)
Q Consensus 883 ~l~~s~d--~l~sgs---------------------------------~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~ 927 (949)
.++++|+ .+++.. .+|.|.-||..+++.+.+...+ ..+..-..
T Consensus 416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 493 (582)
T 1flg_A 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVL 493 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCE
T ss_pred CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccce
Confidence 3456665 333322 2588999999999988777532 23333223
Q ss_pred eCCCCEEEEEeCCCcEEEEeC
Q 002234 928 DDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 928 spdg~~L~sgs~Dg~I~iWdl 948 (949)
...+.+++.|+.||.++.||.
T Consensus 494 ~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 494 ATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EETTTEEEEECTTSEEEEEET
T ss_pred EeCCCEEEEECCCCcEEEEEC
Confidence 334678888999999999986
No 360
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.16 E-value=0.00017 Score=74.64 Aligned_cols=188 Identities=12% Similarity=0.165 Sum_probs=121.7
Q ss_pred eeeEEecccCC--CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEE
Q 002234 701 HLIQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 778 (949)
Q Consensus 701 ~~i~~l~~H~~--~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~ 778 (949)
+.+.++ .|.. ....+.|+ ++.+..+.+.+|.|+++|+.+++..... . ........ ..++++
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeG-------it~~g~----- 106 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEG-------LASDGE----- 106 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEE-------EEECSS-----
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeE-------EEEeCC-----
Confidence 345555 3533 35788887 4677888888999999999998632222 2 11111111 223333
Q ss_pred EecCeEEEecCCCCceEEEEeCCEEEE-EECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECC
Q 002234 779 LRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 857 (949)
Q Consensus 779 ~~~g~i~~~~~~~~v~~v~~~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D 857 (949)
+++. .-.++.+.+||..+.+.+..+.. .++. ..+++. +..+..+..+
T Consensus 107 -----------------------~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~----~~eG---wGLt~D--g~~L~vSdGs 154 (268)
T 3nok_A 107 -----------------------RLYQLTWTEGLLFTWSGMPPQRERTTRY----SGEG---WGLCYW--NGKLVRSDGG 154 (268)
T ss_dssp -----------------------CEEEEESSSCEEEEEETTTTEEEEEEEC----SSCC---CCEEEE--TTEEEEECSS
T ss_pred -----------------------EEEEEEccCCEEEEEECCcCcEEEEEeC----CCce---eEEecC--CCEEEEECCC
Confidence 2333 33578999999999998865442 1221 344443 3333333334
Q ss_pred CCEEEEEECCCCeeEEeecC---C---CcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEeccc------------c
Q 002234 858 GAAVKMWSTSNYNMVGSLPT---L---SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTG------------T 918 (949)
Q Consensus 858 g~~I~iwd~~~~~~~~~~~~---~---~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l~~~------------h 918 (949)
..|.++|..+.+.+.++.- . ..++.+.+....+++.. .++.|.+.|..+++.+..+... .
T Consensus 155 -~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~ 233 (268)
T 3nok_A 155 -TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP 233 (268)
T ss_dssp -SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT
T ss_pred -CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCc
Confidence 4999999999999888772 1 24577888766777766 5789999999999999888532 1
Q ss_pred ccceeEEEEeCCCCEEEEEe
Q 002234 919 SGKVQCMALDDNEEFLVIGT 938 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs 938 (949)
.+..+.|+|+|+++.|+..+
T Consensus 234 ~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 234 EAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCEEEEEECTTTCCEEEEE
T ss_pred CCceEEEEEcCCCCEEEEeC
Confidence 13568999999876655554
No 361
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.13 E-value=0.0013 Score=70.68 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=126.3
Q ss_pred CceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCee
Q 002234 669 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEI 744 (949)
Q Consensus 669 ~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg--~I~vWd~~~~~~ 744 (949)
.....++|+++ ++++...++.|..||..++ ....+. .......+++.++|+++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45678999886 5555557899999998765 222222 235688999999999766654432 466677777754
Q ss_pred EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCCCce-
Q 002234 745 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTF- 822 (949)
Q Consensus 745 ~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~- 822 (949)
..+...........+ ++.+ ++.+++.. .++.|..+|..++..
T Consensus 108 ~~~~~~~~~~~~~g~-------~~~~-----------------------------~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGI-------TPLS-----------------------------DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEECTTCSCEEEE-------EESS-----------------------------SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEeCCCccccCcc-------cccC-----------------------------CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 333222111111111 1111 12233333 467788888765421
Q ss_pred eeeeccc-c--cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC-Cee--EEeecCCCcEEEEEEcCC-EEEEEE
Q 002234 823 ATIQTGH-R--KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNM--VGSLPTLSEVRAMVVSSE-LVYLGC 895 (949)
Q Consensus 823 ~~~~~~~-~--~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~d-~l~sgs 895 (949)
+...... . ...+.....+.+ ++++.++..+....+.|..||+.. +.. ...+........++++++ .++++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 1100100 0 011112245556 666654444444445999999874 321 111111234566788887 455554
Q ss_pred -CCCeEEEEECCCCcEEE--EeccccccceeEEEEe---CCCCEEEEEeCC
Q 002234 896 -KGGTVEIWDQKRQIRIE--TLQTGTSGKVQCMALD---DNEEFLVIGTSD 940 (949)
Q Consensus 896 -~dg~I~vwd~~~~~~~~--~l~~~h~~~I~~l~~s---pdg~~L~sgs~D 940 (949)
..+.|.++|.. ++... .+. ......++++|. ||++.|+.++..
T Consensus 230 ~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccCCCCEEEEECCC
Confidence 56889999975 55432 232 122468999998 898877766543
No 362
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0048 Score=75.74 Aligned_cols=291 Identities=13% Similarity=0.106 Sum_probs=170.6
Q ss_pred cEEEEecCCCCeEEEecCCc-eeeec--------CCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec---
Q 002234 641 VKVLSNGHDSSADFWNHREL-VHVDS--------SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--- 707 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~~~-~~~~~--------~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~--- 707 (949)
..+..+..++-+..||..+. ...+. -....|.++...++ .|..|+.+ -+.+||..++.......-.
T Consensus 174 g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~ 252 (781)
T 3v9f_A 174 GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNI 252 (781)
T ss_dssp TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC--------
T ss_pred CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCcc
Confidence 34555655545777887642 12111 12356899988775 67777766 5889998877332221111
Q ss_pred --ccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEe-------e------cCCCceeeeeeccceEEEEeCC
Q 002234 708 --EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-------H------DIKDQIQNLAVSNSILCFIPQG 772 (949)
Q Consensus 708 --~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~-------~------~~~~~v~~l~~~~~~~~fsp~g 772 (949)
-....|.++...++|. |..|+..+-|.++|..++....... . -....|.++. ..++|
T Consensus 253 ~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~-------~D~~g 324 (781)
T 3v9f_A 253 HGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF-------QDSFN 324 (781)
T ss_dssp ---CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE-------ECSSC
T ss_pred ccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE-------EeCCC
Confidence 1245699999888776 5556664558899988765332221 0 0123344443 33444
Q ss_pred CEEEEEEecCeEEEecC---------------------CCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 773 AGIKVHLRNGKTKLLNS---------------------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 773 ~~l~~~~~~g~i~~~~~---------------------~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
. +-++..++-+..++. ...|.++...+ +.+.+|+.++-|..||..++.......
T Consensus 325 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~--- 400 (781)
T 3v9f_A 325 N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKE--- 400 (781)
T ss_dssp C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----
T ss_pred C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccC---
Confidence 3 344444433333321 23477777765 789999988889999987654432110
Q ss_pred cccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---CCCcEEEEEEcCC-EEEEEECCCeEEEEECC
Q 002234 831 KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~ 906 (949)
........|.++...+++.+.+.. .++ -+..+|..+++...... ....|.++...++ .+..|+. +-+..||..
T Consensus 401 ~~~~~~~~v~~i~~d~~g~lWigt-~~~-Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGNLWFGT-YLG-NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEEEE-TTE-EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESS
T ss_pred CCCCCCcceEEEEECCCCCEEEEe-ccC-CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCC
Confidence 011234679999988766655543 333 68889987776443321 3467899988876 7888887 569999988
Q ss_pred CCcEEEEeccc----cccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 907 RQIRIETLQTG----TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 907 ~~~~~~~l~~~----h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+++........ ....|.++...++|.+.+ |+.++-|..||.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~ 522 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTP 522 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECT
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeC
Confidence 76643322111 135789999998887555 454333555653
No 363
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.08 E-value=8.9e-05 Score=85.45 Aligned_cols=201 Identities=12% Similarity=0.085 Sum_probs=120.3
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEE-E-eCCCEEEEEEecCeEEEecCCCCceEEE
Q 002234 721 SGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF-I-PQGAGIKVHLRNGKTKLLNSSKYPKCLA 797 (949)
Q Consensus 721 dg~~L~Sgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~f-s-p~g~~l~~~~~~g~i~~~~~~~~v~~v~ 797 (949)
||++++.... +++|.+.|+.+.+...+...........+. + . |+++++.+......- +-+-...
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~-------~~~~p~~~~v~~~~~~~~p-~~~dg~~----- 166 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLR-------PQKWPRSNYVFCNGEDETP-LVNDGTN----- 166 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEE-------ECCSSBCSEEEEEECSCEE-SSCSSSS-----
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCccee-------eeecCCCcEEEEecccccc-cCCCCcc-----
Confidence 7887777665 567999999998633322343334455554 5 4 888887665421100 0000000
Q ss_pred EeCCEEE-EEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC------------------
Q 002234 798 LVQGKVY-CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG------------------ 858 (949)
Q Consensus 798 ~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg------------------ 858 (949)
|. ..-.++.+.++|..+.+....... + +....+++++++.++.+++.+.
T Consensus 167 -----l~~~~~~~~~vtvID~~t~~v~~qI~V-----g--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~ 234 (595)
T 1fwx_A 167 -----MEDVANYVNVFTAVDADKWEVAWQVLV-----S--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 234 (595)
T ss_dssp -----TTCGGGEEEEEEEEETTTTEEEEEEEE-----S--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred -----cccccccCceEEEEECCCCeEEEEEEe-----C--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence 00 001234566677776655532211 1 1223456677777766666442
Q ss_pred -------------------CEEEEEECCC--Cee-EEeecCCCcEEEEEEcCC--EEEE-EECCCeEEEEECCCCc----
Q 002234 859 -------------------AAVKMWSTSN--YNM-VGSLPTLSEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQI---- 909 (949)
Q Consensus 859 -------------------~~I~iwd~~~--~~~-~~~~~~~~~v~~l~~s~d--~l~s-gs~dg~I~vwd~~~~~---- 909 (949)
+.|.+.|..+ ++. +..++......++.++|| ++++ +-.+++|.++|+.+.+
T Consensus 235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~ 314 (595)
T 1fwx_A 235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY 314 (595)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccc
Confidence 1377777777 544 566665567778999999 4444 4567899999998653
Q ss_pred --------EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 910 --------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 910 --------~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
....+.. ......++|+|||...++.--|+.|.+||+
T Consensus 315 ~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 315 ENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp SCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred cccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 3444432 235789999999944445567999999996
No 364
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.08 E-value=0.00052 Score=70.91 Aligned_cols=175 Identities=11% Similarity=0.033 Sum_probs=109.9
Q ss_pred CceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEE
Q 002234 669 GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS-GSLDKTARVWSIGNEEIHC 746 (949)
Q Consensus 669 ~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~S-gs~Dg~I~vWd~~~~~~~~ 746 (949)
.-...+.|+++ ++.+.+.+|.|+++|++++ +.+..+ -..........++++.|+. .-.++.+.+||..+.+.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tg--kv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-- 128 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESA--QPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-- 128 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCS--SCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCC--cEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--
Confidence 33478999988 6777888899999999999 455554 1223333223344444444 44589999999999752
Q ss_pred EEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeee
Q 002234 747 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 826 (949)
Q Consensus 747 ~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~ 826 (949)
+........ ...+++||+ .|+.+..++.|.++|..+.+.....
T Consensus 129 ~~ti~~~~e---------GwGLt~Dg~----------------------------~L~vSdGs~~l~~iDp~T~~v~~~I 171 (268)
T 3nok_A 129 ERTTRYSGE---------GWGLCYWNG----------------------------KLVRSDGGTMLTFHEPDGFALVGAV 171 (268)
T ss_dssp EEEEECSSC---------CCCEEEETT----------------------------EEEEECSSSEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCc---------eeEEecCCC----------------------------EEEEECCCCEEEEEcCCCCeEEEEE
Confidence 222211111 111334444 4666667889999999998877543
Q ss_pred cccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC--------------CCcEEEEEEcCC
Q 002234 827 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--------------LSEVRAMVVSSE 889 (949)
Q Consensus 827 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--------------~~~v~~l~~s~d 889 (949)
..... ...-..++.+.|..+ ...+....+ ..|.+-|..+++.+..+.- ....+.++++|+
T Consensus 172 ~V~~~-g~~v~~lNeLe~~dG-~lyanvw~s-~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 172 QVKLR-GQPVELINELECANG-VIYANIWHS-SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp ECEET-TEECCCEEEEEEETT-EEEEEETTC-SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EeCCC-CcccccccccEEeCC-EEEEEECCC-CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 32110 001134577888744 444444334 4999999999998887752 135789999986
No 365
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.07 E-value=5.2e-05 Score=87.30 Aligned_cols=296 Identities=13% Similarity=0.187 Sum_probs=185.7
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccC-CchhHHHHHHHHHHhhccc
Q 002234 121 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNS-VDPRVLEATIFLLSELGSR 199 (949)
Q Consensus 121 ~~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s-~~~~~~~~av~~L~~l~~~ 199 (949)
.+-++..+.++.++--+++++.|+..++.+.|+-+. -.-...+.+++.+|-.. .|.+..+++...|+++...
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~-------~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL-------EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT-------HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH-------HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 455666778888888889999999999998765433 11233456678888774 5678899999999888665
Q ss_pred Cccceeeccc--cCCcH-HHHHHHHhhChhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHH
Q 002234 200 DKSVIHTLTR--VESDV-ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLL 276 (949)
Q Consensus 200 ~~~~~~~i~~--~~~~i-~~l~~llk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~ 276 (949)
+...-..-.. ....+ ..+. +.=+..-+.++.|+.+|++.. + ...-.++-+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--------------------d~f~~~~~~i~~Ll~lL~~~d--f-----~vR~~alql 145 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFT--------------------EIFIKQQENVTLLLSLLEEFD--F-----HVRWPGVKL 145 (651)
T ss_dssp C--------------CHHHHHH--------------------HHHHHSTHHHHHHHHHTTCCC--H-----HHHHHHHHH
T ss_pred CCcccccccccccchHHHHHHH--------------------HHHHcCCccHHHHHHHhcCcc--H-----HHHHHHHHH
Confidence 4311100000 00000 0000 111223344577787776532 1 111224445
Q ss_pred HHHHhcCCcccccccchhhhc-chhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcC
Q 002234 277 LGQMIGDSEESIVSSIANTIV-SSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 355 (949)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~i~-~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~ 355 (949)
|..|+... .......|. .++||+.||++|......-|..|..+|..+...+....+.++-+++.++|+.+++...
T Consensus 146 L~~L~~~r----~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg 221 (651)
T 3grl_A 146 LTSLLKQL----GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG 221 (651)
T ss_dssp HHHHHHHS----HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHhcC----cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcC
Confidence 55553222 123555666 6799999999999888888999999999999999999999999999999999988854
Q ss_pred C----cchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCcc---chhHHH---HHHhhhcccCC
Q 002234 356 D----GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ---CPVVAG---LLLQLDLLAEP 425 (949)
Q Consensus 356 ~----~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~---~~~~a~---~l~~l~~l~~~ 425 (949)
. ..=..|+.+|.+|++.+ ....+-+.+.|++...- .+|+..+++. ...+++ +|.-..+|..+
T Consensus 222 ~~~Ggivv~DCL~ll~nLLr~N-----~sNQ~~FrEt~~i~~L~---~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~ 293 (651)
T 3grl_A 222 NSDGGIVVEDCLILLQNLLKNN-----NSNQNFFKEGSYIQRMK---PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP 293 (651)
T ss_dssp GGGSHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTCGGGGG---GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred CCccchhHHHHHHHHHHHHhcC-----HHHHHHHHHcCCHHHHH---HHhCCCccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 4 22335688889998873 23344577888886644 3343322110 012455 44444666666
Q ss_pred CC---------CCccHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHhc
Q 002234 426 RK---------MSIYREEAIDTLISCLRNSDYP-AAQLAAAKTIVSL 462 (949)
Q Consensus 426 ~~---------~~~~r~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~l 462 (949)
.. ..+++.+.++.|+..+.....+ ..+..|..++..+
T Consensus 294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 294 NNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp TSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 33 2446667788999988876655 4565566666553
No 366
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.04 E-value=0.001 Score=68.71 Aligned_cols=181 Identities=12% Similarity=0.040 Sum_probs=113.0
Q ss_pred ceEEEEEeCC-EEEEEeCCC--cEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeE
Q 002234 670 KVLSIACFRD-KIFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIH 745 (949)
Q Consensus 670 ~V~~l~~s~d-~lasgs~Dg--~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs-~Dg~I~vWd~~~~~~~ 745 (949)
-...+.|+.+ ++.+.+.+| .|+++|++++ +.+..+.-. .......+.++++.|+... .++.+.+||..+.+..
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESG--KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCC--cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 3478999966 556666666 8999999999 566655432 2333333444556666555 4889999999997522
Q ss_pred EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeee
Q 002234 746 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 746 ~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
....... .. ..+++|++. ++.+..++.|.++|..+.+....
T Consensus 121 --~ti~~~~--eG-------~glt~dg~~----------------------------L~~SdGs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 121 --RSFNYDG--EG-------WGLTHNDQY----------------------------LIMSDGTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp --EEEECSS--CC-------CCEEECSSC----------------------------EEECCSSSEEEEECTTTCSEEEE
T ss_pred --EEEECCC--Cc-------eEEecCCCE----------------------------EEEECCCCeEEEEcCCCCeEEEE
Confidence 2221111 11 114455543 55555577899999999887754
Q ss_pred ecccccccCCC-CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC-------------CCcEEEEEEcCC--
Q 002234 826 QTGHRKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------------LSEVRAMVVSSE-- 889 (949)
Q Consensus 826 ~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~s~d-- 889 (949)
.... ..+.. ..++.+.+.. +...+..-.+ ..|.+.|..+++.+..+.. ....+.++++|+
T Consensus 162 I~V~--~~g~~~~~lNELe~~~-G~lyan~w~~-~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 162 ITVT--AHGEELPELNELEWVD-GEIFANVWQT-NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EECE--ETTEECCCEEEEEEET-TEEEEEETTS-SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEec--cCCccccccceeEEEC-CEEEEEEccC-CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 3221 01111 3456677774 4444444334 4999999999999887762 135689999987
Q ss_pred EEEEEEC
Q 002234 890 LVYLGCK 896 (949)
Q Consensus 890 ~l~sgs~ 896 (949)
.+++.++
T Consensus 238 ~lfVTGK 244 (262)
T 3nol_A 238 RLFVTGK 244 (262)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 5555554
No 367
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.02 E-value=0.0012 Score=77.72 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=83.2
Q ss_pred CcEEEEECCCCceeeeeccccc----ccCCCCCEEEEEEe-CCc---eEEEEEECCCCEEEEEECCCCeeEEeecCC---
Q 002234 810 GAIQEIDLATGTFATIQTGHRK----LLGKANPVHALQVH-NGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTL--- 878 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~----~~~h~~~V~~l~~~-~~~---~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~--- 878 (949)
+.|..+|..+|+....+..... +.....++. +... .++ ..++.++.+| .+.++|..+++.+......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~ 355 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG-IVYTLDRTDGALVSANKLDDTV 355 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTC
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCc-EEEEEECCCCCEeecccccCCc
Confidence 4799999999998865432110 011122332 2222 455 5666677776 9999999999987665411
Q ss_pred -----------CcE--------------------------EEEEEcCC--EEEEE-------------------------
Q 002234 879 -----------SEV--------------------------RAMVVSSE--LVYLG------------------------- 894 (949)
Q Consensus 879 -----------~~v--------------------------~~l~~s~d--~l~sg------------------------- 894 (949)
.++ ..++++|+ .+++.
T Consensus 356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 435 (599)
T 1w6s_A 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT 435 (599)
T ss_dssp CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence 011 13455555 22221
Q ss_pred --------E------CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 895 --------C------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 895 --------s------~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+ .+|.+.-||..+++.+.....+ .++..-.+...+..++.++.||.++.||.
T Consensus 436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEEC
Confidence 1 3478999999999988877422 22222223345778888999999999985
No 368
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.00 E-value=0.0054 Score=64.22 Aligned_cols=214 Identities=11% Similarity=-0.001 Sum_probs=119.6
Q ss_pred CcEEEEecCCCceee---eEEecccCCCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeecc
Q 002234 688 GTIKVWTGRGSILHL---IQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 763 (949)
Q Consensus 688 g~I~vWd~~t~~~~~---i~~l~~H~~~V~~v~fspdg~~L~-Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~ 763 (949)
+.|+.+|+++..... ...+......+..++|+++++.|+ +-..++.|..++..++....... ........+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~i---- 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGI---- 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTCCCEEEE----
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-CCCCCccEE----
Confidence 478999988763211 111222234578999999665554 54557899999987753221111 000122222
Q ss_pred ceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCceeeeecccccccCCCCCEEEE
Q 002234 764 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 842 (949)
Q Consensus 764 ~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 842 (949)
++.+++.. ++.+ ...+.|.++|+......... .........+
T Consensus 85 ---a~d~~~~~----------------------------lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~i 127 (267)
T 1npe_A 85 ---ALDHLGRT----------------------------IFWTDSQLDRIEVAKMDGTQRRVLF------DTGLVNPRGI 127 (267)
T ss_dssp ---EEETTTTE----------------------------EEEEETTTTEEEEEETTSCSCEEEE------CSSCSSEEEE
T ss_pred ---EEEecCCe----------------------------EEEEECCCCEEEEEEcCCCCEEEEE------ECCCCCccEE
Confidence 25554433 3333 34567888887644322111 1112457899
Q ss_pred EEeCC-ceEEEEEEC-CCCEEEEEECCCCeeEEee--cCCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEec
Q 002234 843 QVHNG-LVYTASTSL-DGAAVKMWSTSNYNMVGSL--PTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 843 ~~~~~-~~~l~s~s~-Dg~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~ 915 (949)
+++++ +.+.++... +.+.|..+++.... ...+ ........++++++ .++.+. ..+.|.++|.........+.
T Consensus 128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp EEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred EEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 99984 444444322 12488888875432 2222 23356889999985 565554 56899999997654433332
Q ss_pred cccccceeEEEEeCCCCEEEEE-eCCCcEEEEeC
Q 002234 916 TGTSGKVQCMALDDNEEFLVIG-TSDGRIQAWGL 948 (949)
Q Consensus 916 ~~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iWdl 948 (949)
+ ......++.. +..|+.+ ..++.|.++|.
T Consensus 207 -~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 207 -G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp -C-CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred -C-CCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 2 2234566654 4455544 45688888875
No 369
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.97 E-value=0.0057 Score=68.10 Aligned_cols=225 Identities=9% Similarity=-0.005 Sum_probs=129.2
Q ss_pred CCCCeEEEecCC-ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-C
Q 002234 648 HDSSADFWNHRE-LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-G 722 (949)
Q Consensus 648 ~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g 722 (949)
....|+.++... ...........+..++|.+. ++++-...+.|..|+..++. ....+.........+++.+. +
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTT
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCC
Confidence 345688888763 22333334456889999963 55555677899999998762 22223323344567888875 4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE
Q 002234 723 EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 802 (949)
Q Consensus 723 ~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~ 802 (949)
.+.++-...+.|.+.+++......+.. ..-.....++ +.|.+..+.+..
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~gia-------vdp~~g~ly~td----------------------- 220 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIA-------LHPMEGTIYWTD----------------------- 220 (386)
T ss_dssp EEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEE-------EETTTTEEEEEE-----------------------
T ss_pred eEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEE-------EEcCCCeEEEec-----------------------
Confidence 455555667788888877543222211 1111222332 555544432222
Q ss_pred EEEEECC-CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCc
Q 002234 803 VYCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 880 (949)
Q Consensus 803 l~sgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 880 (949)
..+ +.|..+++......... .......+.|++++++..+..+....+.|..+|+........+. ....
T Consensus 221 ----~~~~~~I~r~~~dG~~~~~~~------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 221 ----WGNTPRIEASSMDGSGRRIIA------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp ----CSSSCEEEEEETTSCSCEEEE------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred ----cCCCCEEEEEeCCCCCcEEEE------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 122 56666666543322111 11234578999996554444444444599999986543332333 3456
Q ss_pred EEEEEEcCCEEEEE-ECCCeEEEEECCCCcEEEEec
Q 002234 881 VRAMVVSSELVYLG-CKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 881 v~~l~~s~d~l~sg-s~dg~I~vwd~~~~~~~~~l~ 915 (949)
...+++..+.++.+ ...+.|..+|..+|+....+.
T Consensus 291 P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 291 PFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 78888877755544 467889999977777666664
No 370
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.97 E-value=0.012 Score=64.37 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=128.4
Q ss_pred CCCeEEEecCC-ceeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-CC
Q 002234 649 DSSADFWNHRE-LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GE 723 (949)
Q Consensus 649 dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g~ 723 (949)
.+.|+..+... ...........+..++|++. ++++-...+.|..++..++. ....+.........+++.+. ++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCe
Confidence 34577777763 22333334456889999963 55555577899999998763 22223223345678899875 45
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEE
Q 002234 724 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 803 (949)
Q Consensus 724 ~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l 803 (949)
+.++-...+.|.+.+.+......+.. ..-.....++ +.|.+..+...
T Consensus 130 ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~ia-------vdp~~g~ly~t------------------------- 176 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIA-------LHPMEGTIYWT------------------------- 176 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEE-------EETTTTEEEEE-------------------------
T ss_pred EEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEE-------EecCcCeEEEe-------------------------
Confidence 55666667889999887653222211 1111223333 55544433222
Q ss_pred EEEECC-CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCCcE
Q 002234 804 YCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEV 881 (949)
Q Consensus 804 ~sgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v 881 (949)
-..+ +.|..+++........ ........+.+++++++..+..+....+.|..+|+........+. .....
T Consensus 177 --d~~~~~~I~r~~~dG~~~~~~------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P 248 (349)
T 3v64_C 177 --DWGNTPRIEASSMDGSGRRII------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 248 (349)
T ss_dssp --ECSSSCEEEEEETTSCSCEES------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE
T ss_pred --ccCCCCEEEEEeCCCCCcEEE------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCc
Confidence 2222 5667777654332211 111234678999997554444444444599999987543322232 34567
Q ss_pred EEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEe
Q 002234 882 RAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 882 ~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l 914 (949)
..+++..+.++.+. ..+.|..+|..+|+....+
T Consensus 249 ~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 249 FAITVFEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 78888777655554 5688999997777655555
No 371
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.90 E-value=0.0006 Score=82.03 Aligned_cols=259 Identities=9% Similarity=-0.025 Sum_probs=143.5
Q ss_pred EEEEeC-C--EEEEEeCCC-----------cEEEEecCCCceeeeEEecc-cCCCEEEEEEecCCCEEEEEeC-CCcEEE
Q 002234 673 SIACFR-D--KIFSGHSDG-----------TIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSL-DKTARV 736 (949)
Q Consensus 673 ~l~~s~-d--~lasgs~Dg-----------~I~vWd~~t~~~~~i~~l~~-H~~~V~~v~fspdg~~L~Sgs~-Dg~I~v 736 (949)
+.++.+ + .++.|+.++ .+.+||..++++..+..+.. +.....++++..+|++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455554 3 667776543 58899999987766655532 3334456778889999999985 568999
Q ss_pred EECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEE-ec-----CeEEEecCCCCceEEE-------------
Q 002234 737 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL-RN-----GKTKLLNSSKYPKCLA------------- 797 (949)
Q Consensus 737 Wd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~-~~-----g~i~~~~~~~~v~~v~------------- 797 (949)
||..+++............- ...++.++|+.++++. .+ ..+.+|+.........
T Consensus 270 yd~~t~~W~~~~~~~~~R~~-------~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGY-------QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSS-------CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred ecCcCCceeECCCCCccccc-------cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence 99998864433221111111 1223556888888777 33 4567777654332221
Q ss_pred ----EeCCE-EEEEECC---------CcEEEEECCCCceeeeecccccc----cCCCCCEEEEEEe-CCceEEEEEECCC
Q 002234 798 ----LVQGK-VYCGCQD---------GAIQEIDLATGTFATIQTGHRKL----LGKANPVHALQVH-NGLVYTASTSLDG 858 (949)
Q Consensus 798 ----~~~~~-l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~----~~h~~~V~~l~~~-~~~~~l~s~s~Dg 858 (949)
..+++ ++.|+.| ..+..||..++........ ... ......-.++.+. .++.+++.++.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 01122 3445444 3567888887765432211 111 0011123445554 3566666665321
Q ss_pred -------C---EEEEEECCCCeeEEee----cCCCcEEEEEEcCC--EEEEEECC-----------CeEEEEECCCCcEE
Q 002234 859 -------A---AVKMWSTSNYNMVGSL----PTLSEVRAMVVSSE--LVYLGCKG-----------GTVEIWDQKRQIRI 911 (949)
Q Consensus 859 -------~---~I~iwd~~~~~~~~~~----~~~~~v~~l~~s~d--~l~sgs~d-----------g~I~vwd~~~~~~~ 911 (949)
. .|.+||..+..-.... +....-.++.+.++ .++.|+.+ ..+.+||..+.+-.
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 1 6788888776544332 22222234444444 66666643 56899999876532
Q ss_pred EEecccc-ccceeEEEEeCCCCEEEEEeC
Q 002234 912 ETLQTGT-SGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 912 ~~l~~~h-~~~I~~l~~spdg~~L~sgs~ 939 (949)
..-...+ ........+.|||+.++.|+.
T Consensus 502 ~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2110011 112234456799999999985
No 372
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.83 E-value=0.0029 Score=68.50 Aligned_cols=226 Identities=11% Similarity=0.045 Sum_probs=132.8
Q ss_pred cccccEEEEecCCCCeEEEecCCc-eeeecC--------------------CCCceEEEEEeC-C-EEEEEeCCCcEEEE
Q 002234 637 AFEMVKVLSNGHDSSADFWNHREL-VHVDSS--------------------ENGKVLSIACFR-D-KIFSGHSDGTIKVW 693 (949)
Q Consensus 637 ~~~~~~l~s~s~dg~I~vWd~~~~-~~~~~~--------------------h~~~V~~l~~s~-d-~lasgs~Dg~I~vW 693 (949)
..++..++++..++.|..|+.... ...+.. ..+.+.++++.+ + .|+.+...+.|..+
T Consensus 27 d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~ 106 (322)
T 2fp8_A 27 DSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVV 106 (322)
T ss_dssp CTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEE
Confidence 345666778888899999987642 222210 113578999996 4 77777666668899
Q ss_pred ecCCCceeeeEE-ecc-cCCCEEEEEEec-CCCEEEEEeC-----------------CCcEEEEECCCCeeEEEEeecCC
Q 002234 694 TGRGSILHLIQQ-IRE-HTKAVTGLAILQ-SGEMLYSGSL-----------------DKTARVWSIGNEEIHCVQVHDIK 753 (949)
Q Consensus 694 d~~t~~~~~i~~-l~~-H~~~V~~v~fsp-dg~~L~Sgs~-----------------Dg~I~vWd~~~~~~~~~~~~~~~ 753 (949)
|..++..+.+.. ..+ .......+++.+ +|++.++-.. ++.|..||..+++.......
T Consensus 107 d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--- 183 (322)
T 2fp8_A 107 GSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE--- 183 (322)
T ss_dssp CTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE---
T ss_pred eCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC---
Confidence 987663222211 111 123578899999 9987776533 36688888777653222110
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCce--eeeecccc
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTF--ATIQTGHR 830 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~--~~~~~~~~ 830 (949)
...+..++++|+|+. ++++ +.++.|..||+..... ...+.
T Consensus 184 ------~~~p~gia~~~dg~~----------------------------lyv~d~~~~~I~~~~~~~~~~~~~~~~~--- 226 (322)
T 2fp8_A 184 ------LHVPGGAEVSADSSF----------------------------VLVAEFLSHQIVKYWLEGPKKGTAEVLV--- 226 (322)
T ss_dssp ------ESCCCEEEECTTSSE----------------------------EEEEEGGGTEEEEEESSSTTTTCEEEEE---
T ss_pred ------CccCcceEECCCCCE----------------------------EEEEeCCCCeEEEEECCCCcCCccceEE---
Confidence 112334457777764 3333 4457788888764321 11111
Q ss_pred cccCCCCCEEEEEEeCCceEEEEEECC---------CCEEEEEECCCCeeEEeecC-----CCcEEEEEEcCCEEEEEE-
Q 002234 831 KLLGKANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPT-----LSEVRAMVVSSELVYLGC- 895 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~~l~s~s~D---------g~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~d~l~sgs- 895 (949)
.. .. ...+++++++.+.++.... +..|..+|. .++.+..+.. ...+.++++..+.++.++
T Consensus 227 ~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~ 301 (322)
T 2fp8_A 227 KI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 301 (322)
T ss_dssp EC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECS
T ss_pred eC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeec
Confidence 11 12 6788999887766655330 136888886 4666666652 234666777666666654
Q ss_pred CCCeEEEEECCC
Q 002234 896 KGGTVEIWDQKR 907 (949)
Q Consensus 896 ~dg~I~vwd~~~ 907 (949)
.++.|.++++..
T Consensus 302 ~~~~i~~~~~~~ 313 (322)
T 2fp8_A 302 FHGSVGILVYDK 313 (322)
T ss_dssp SCSEEEEEEC--
T ss_pred CCCceEEEeccc
Confidence 567888888753
No 373
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.79 E-value=0.045 Score=58.89 Aligned_cols=223 Identities=10% Similarity=-0.045 Sum_probs=124.5
Q ss_pred CCCeEEEecCCc-eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCC---ceeeeEEecccCCCEEEEEEecC
Q 002234 649 DSSADFWNHREL-VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS---ILHLIQQIREHTKAVTGLAILQS 721 (949)
Q Consensus 649 dg~I~vWd~~~~-~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~---~~~~i~~l~~H~~~V~~v~fspd 721 (949)
...|+..|+... ..........+.+++|+++ .+++-..++.|..++..+. . .....+...-.....+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~-~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-ccEEEEeCCCCCcCEEEEeec
Confidence 356888887742 2222334567889999973 5555556789999998861 1 112223223345678899875
Q ss_pred C-CEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 722 G-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 722 g-~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
+ ++.++-..++.|.+.+........+... .......++ +.|.+..+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~ia-------vdp~~g~l------------------------- 134 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIV-------VDPVHGFM------------------------- 134 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEE-------EETTTTEE-------------------------
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEE-------eCCCCCEE-------------------------
Confidence 4 4455556678899999876432222211 111223333 55544433
Q ss_pred CEEEEEECC--CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--
Q 002234 801 GKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-- 876 (949)
Q Consensus 801 ~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-- 876 (949)
+.+... +.|..+++......... ...-...+.+++++++..+..+....+.|..+|+..........
T Consensus 135 ---y~~d~~~~~~I~~~~~dG~~~~~~~------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~ 205 (316)
T 1ijq_A 135 ---YWTDWGTPAKIKKGGLNGVDIYSLV------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 205 (316)
T ss_dssp ---EEEECSSSCEEEEEETTSCCEEEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred ---EEEccCCCCeEEEEcCCCCCeEEEE------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC
Confidence 332221 45666666432221111 11234678999997654444444444599999987432221111
Q ss_pred -CCCcEEEEEEcCCEEEEE-ECCCeEEEEECCCCcEEEEe
Q 002234 877 -TLSEVRAMVVSSELVYLG-CKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 877 -~~~~v~~l~~s~d~l~sg-s~dg~I~vwd~~~~~~~~~l 914 (949)
.......+++..+.++.. ...+.|..+|..+++.+..+
T Consensus 206 ~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 206 KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 234577888877755554 45688999998777655554
No 374
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.75 E-value=0.0032 Score=76.85 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=111.9
Q ss_pred ceEEEEEe-CC--EEE-EEeCCC----cEEEEecCCC-ceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEE
Q 002234 670 KVLSIACF-RD--KIF-SGHSDG----TIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTAR 735 (949)
Q Consensus 670 ~V~~l~~s-~d--~la-sgs~Dg----~I~vWd~~t~-~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~ 735 (949)
.+...+|| || +|+ +.+.+| +|+++|+.++ +. ....+.. ....+.|+|||+.|+..+.| ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 68889999 87 454 333333 4999999988 52 1111211 23468899999988877765 2578
Q ss_pred EEECCCCeeE--EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEE
Q 002234 736 VWSIGNEEIH--CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 813 (949)
Q Consensus 736 vWd~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~ 813 (949)
.|++.++... .+...........+ .|+|||+.++....++ ....|.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~-------~~SpDg~~l~~~~~~~-------------------------~~~~l~ 298 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFM-------YKAADTNTLCIGSQSP-------------------------ETAEVH 298 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEE-------EECTTSSEEEEEEECS-------------------------SCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEE-------EECCCCCEEEEEecCC-------------------------CCceEE
Confidence 8888776411 11111111222233 3899999876544321 234577
Q ss_pred EEECCCCc--e-eeeecccccccCCCCCEEEEEEeCCceEEEEEECC---CCEEEEEECCCC-eeEE-eecCCC--cEEE
Q 002234 814 EIDLATGT--F-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD---GAAVKMWSTSNY-NMVG-SLPTLS--EVRA 883 (949)
Q Consensus 814 iwd~~~~~--~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---g~~I~iwd~~~~-~~~~-~~~~~~--~v~~ 883 (949)
++|+.++. . ... ...+......++.|+.++.+++....+ ...|..+|+.++ .... .+.+.. .+..
T Consensus 299 ~~d~~~~~~~~~~~~-----l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~ 373 (751)
T 2xe4_A 299 LLDLRKGNAHNTLEI-----VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMES 373 (751)
T ss_dssp EEESSSCTTCCCEEE-----SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEE
T ss_pred EEECCCCCCCceeEE-----eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEE
Confidence 78887652 2 011 112234566777766666665555443 136777787653 2222 234333 4567
Q ss_pred EEEcCC-EEEEEECCCe--EEEEEC
Q 002234 884 MVVSSE-LVYLGCKGGT--VEIWDQ 905 (949)
Q Consensus 884 l~~s~d-~l~sgs~dg~--I~vwd~ 905 (949)
+.+..+ .+++...++. |+++|+
T Consensus 374 ~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 374 IAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEECCEEEEEEEeCCEEEEEEEec
Confidence 777777 4556667775 555665
No 375
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.74 E-value=0.0023 Score=65.47 Aligned_cols=153 Identities=10% Similarity=0.125 Sum_probs=106.4
Q ss_pred cCCCCceEEEEeCCEEEEEECC---CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEE
Q 002234 788 NSSKYPKCLALVQGKVYCGCQD---GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 864 (949)
Q Consensus 788 ~~~~~v~~v~~~~~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iw 864 (949)
+.......+.|+++.|+.++.. ..|+.+|+.+++........ . ..---.+++..+..|.++ -.+ +.+.+|
T Consensus 18 d~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~-~~fgeGi~~~~~~ly~lt-w~~-~~v~v~ 90 (243)
T 3mbr_X 18 DTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP----P-PYFGAGIVAWRDRLIQLT-WRN-HEGFVY 90 (243)
T ss_dssp CTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC----T-TCCEEEEEEETTEEEEEE-SSS-SEEEEE
T ss_pred CCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC----C-CcceeEEEEeCCEEEEEE-eeC-CEEEEE
Confidence 4456677888888887776654 48999999999988543321 1 112234666666666554 334 599999
Q ss_pred ECCCCeeEEeecCCCcEEEEEEcCCEEEEEECCCeEEEEECCCCcEEEEeccccc----cceeEEEEeCCCCEEEEEeCC
Q 002234 865 STSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTS----GKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 865 d~~~~~~~~~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~----~~I~~l~~spdg~~L~sgs~D 940 (949)
|..+.+.+.+++....-+.++.....++.+..++.|.++|..+.+.+.++..+.. ..++.+.|. +|+..+..-.+
T Consensus 91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred ECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 9999999999996555567777766777777789999999999998888864321 245666765 66655444356
Q ss_pred CcEEEEeC
Q 002234 941 GRIQAWGL 948 (949)
Q Consensus 941 g~I~iWdl 948 (949)
..|.+.|.
T Consensus 170 ~~I~vIDp 177 (243)
T 3mbr_X 170 SRIARIDP 177 (243)
T ss_dssp TEEEEECT
T ss_pred CeEEEEEC
Confidence 67766654
No 376
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.73 E-value=0.053 Score=60.49 Aligned_cols=225 Identities=10% Similarity=-0.045 Sum_probs=129.3
Q ss_pred CCCeEEEecCCc-eeeecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCc--eeeeEEecccCCCEEEEEEec-C
Q 002234 649 DSSADFWNHREL-VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQ-S 721 (949)
Q Consensus 649 dg~I~vWd~~~~-~~~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~--~~~i~~l~~H~~~V~~v~fsp-d 721 (949)
...|+..++... ..........+.+++|++. ++++-...+.|+.+++.+.. ......+.........+++.+ .
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence 467877777632 2333445677899999973 45555567889999987631 012223333445678899998 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 722 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 722 g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
+++.++-...+.|.+.+++......+... .-.....++ +.|.+..
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~ia-------vdp~~g~--------------------------- 215 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIV-------VDPVHGF--------------------------- 215 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEE-------EETTTTE---------------------------
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEE-------EecccCe---------------------------
Confidence 55555656678898888876542222211 111223333 5554443
Q ss_pred EEEEEEC--CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---
Q 002234 802 KVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--- 876 (949)
Q Consensus 802 ~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--- 876 (949)
|+.... .+.|...++......... ...-...+.|++++++..+..+......|..+|+..........
T Consensus 216 -ly~td~~~~~~I~~~~~dG~~~~~~~------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 288 (400)
T 3p5b_L 216 -MYWTDWGTPAKIKKGGLNGVDIYSLV------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 288 (400)
T ss_dssp -EEEEECSSSCCEEEEETTSCSCEEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS
T ss_pred -EEEEeCCCCCEEEEEeCCCCccEEEE------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC
Confidence 333321 256666666543322111 11225678999997655554444444599999986543322222
Q ss_pred CCCcEEEEEEcCCEEE-EEECCCeEEEEECCCCcEEEEec
Q 002234 877 TLSEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 877 ~~~~v~~l~~s~d~l~-sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
.-....++++..+.++ +-...+.|..+|..+|+.+..+.
T Consensus 289 ~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 289 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 2345678888777544 45566889999987877655553
No 377
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.73 E-value=0.0089 Score=64.08 Aligned_cols=225 Identities=9% Similarity=0.076 Sum_probs=122.9
Q ss_pred ccccccEEEEecCCCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEe-CCC-cEEEEecCCCceeeeEEecccCC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGH-SDG-TIKVWTGRGSILHLIQQIREHTK 711 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs-~Dg-~I~vWd~~t~~~~~i~~l~~H~~ 711 (949)
+..++..+++...++.|..||............+.+..+++.++ ++++.. .++ .|..+|..+++...+..+. ...
T Consensus 39 ~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~ 117 (306)
T 2p4o_A 39 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAI 117 (306)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCS
T ss_pred ECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-Ccc
Confidence 44567766776678899999987543333334467899999986 333333 222 4667787777443333332 223
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecC-C--CceeeeeeccceEEEEeCCCEEEEEEecCeEEEec
Q 002234 712 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI-K--DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 788 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~-~--~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~ 788 (949)
....+++.+++..+++-+.++.|..+|..++.......... . .....+. .+.. ++++++.+
T Consensus 118 ~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~-~png--is~dg~~l------------- 181 (306)
T 2p4o_A 118 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP-AANG--LKRFGNFL------------- 181 (306)
T ss_dssp CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC-SEEE--EEEETTEE-------------
T ss_pred ccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC-cCCC--cCcCCCEE-------------
Confidence 34555555555555555568889888887653222111100 0 0000110 0111 14444432
Q ss_pred CCCCceEEEEeCCEEEEEECCCcEEEEECCC-CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC
Q 002234 789 SSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 867 (949)
Q Consensus 789 ~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~ 867 (949)
+++-+..+.|..||+.. +..... ..+. .......+++++++.+.++.... +.|.++|..
T Consensus 182 --------------yv~d~~~~~I~~~~~~~~g~~~~~----~~~~-~~~~P~gi~vd~dG~l~va~~~~-~~V~~~~~~ 241 (306)
T 2p4o_A 182 --------------YVSNTEKMLLLRIPVDSTDKPGEP----EIFV-EQTNIDDFAFDVEGNLYGATHIY-NSVVRIAPD 241 (306)
T ss_dssp --------------EEEETTTTEEEEEEBCTTSCBCCC----EEEE-ESCCCSSEEEBTTCCEEEECBTT-CCEEEECTT
T ss_pred --------------EEEeCCCCEEEEEEeCCCCCCCcc----EEEe-ccCCCCCeEECCCCCEEEEeCCC-CeEEEECCC
Confidence 23334567888888864 322100 0010 01245678899988776665544 489999975
Q ss_pred CCeeE--Eeec-CCCcEEEEEEc---CC--EEEEEECCC
Q 002234 868 NYNMV--GSLP-TLSEVRAMVVS---SE--LVYLGCKGG 898 (949)
Q Consensus 868 ~~~~~--~~~~-~~~~v~~l~~s---~d--~l~sgs~dg 898 (949)
++.. ..+. .....++++|. +| .+++.+..+
T Consensus 242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 5542 2344 33678999998 55 566655443
No 378
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.71 E-value=0.035 Score=60.73 Aligned_cols=229 Identities=10% Similarity=-0.000 Sum_probs=126.7
Q ss_pred eEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeEEEE
Q 002234 671 VLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQ 748 (949)
Q Consensus 671 V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L-~Sgs~Dg~I~vWd~~~~~~~~~~ 748 (949)
.+|.+..++ +|+.+ ....|+..++.+. .....+. .......++|++.+..| ++-...+.|..++..++....+.
T Consensus 36 ~~C~~~~~~~~ll~~-~~~~I~~i~~~g~--~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-NRIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEE-CBSCEEEECTTSC--CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEee-cccceEEEeCCCC--eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345554444 33333 3456888888776 2333333 34457899999855544 45556788998998876422221
Q ss_pred eecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEE-EECCCcEEEEECCCCceeeeec
Q 002234 749 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQT 827 (949)
Q Consensus 749 ~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~ 827 (949)
.... ..... +++.+.+. .|+. -...+.|.++++........
T Consensus 112 ~~~~-~~p~g-------lavd~~~g----------------------------~ly~~d~~~~~I~~~~~dG~~~~~l-- 153 (349)
T 3v64_C 112 STGL-ESPGG-------LAVDWVHD----------------------------KLYWTDSGTSRIEVANLDGAHRKVL-- 153 (349)
T ss_dssp CSSC-SCCCE-------EEEETTTT----------------------------EEEEEETTTTEEEEEETTSCSCEEE--
T ss_pred eCCC-CCccE-------EEEecCCC----------------------------eEEEEcCCCCeEEEEcCCCCceEEE--
Confidence 1110 11112 22443333 3333 33456777777765433211
Q ss_pred ccccccCCCCCEEEEEEeCCc-eEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEE-ECCCeEEE
Q 002234 828 GHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEI 902 (949)
Q Consensus 828 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sg-s~dg~I~v 902 (949)
..........++++|.+ .+..+-......|..+++.......... .-...+.++++++ .++.+ +..+.|..
T Consensus 154 ----~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 154 ----LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp ----ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ----EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 11223457899999744 4444433331488888876433322222 3456889999975 55555 45678999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
+|+........+ .........+++. ++...++-...+.|..++
T Consensus 230 ~~~dG~~~~~~~-~~~~~~P~giav~-~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 230 ANLDGSHRKAVI-SQGLPHPFAITVF-EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EETTSCSCEEEE-CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EeCCCCceEEEE-eCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence 998754433333 2233456778883 455555555667777665
No 379
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.68 E-value=0.024 Score=63.00 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=127.4
Q ss_pred EEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEEEee
Q 002234 673 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVH 750 (949)
Q Consensus 673 ~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~ 750 (949)
|.+..++ +|+.+ ....|+..++.++. ..... ........++|++.+. ++++-...+.|..|+..++....+...
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~~--~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRSE--YTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSCC--CEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccceeEee-cCccceeeccCCCc--EEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4444444 33333 34678889988763 32223 2345678999998554 455555678899999887643222211
Q ss_pred cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc
Q 002234 751 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 830 (949)
Q Consensus 751 ~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 830 (949)
.. .. +..+++.+.+..+ +++-...+.|.++++........
T Consensus 157 ~~-~~-------p~glavd~~~g~l---------------------------Y~~d~~~~~I~~~~~dg~~~~~l----- 196 (386)
T 3v65_B 157 GL-ES-------PGGLAVDWVHDKL---------------------------YWTDSGTSRIEVANLDGAHRKVL----- 196 (386)
T ss_dssp SC-SC-------CCCEEEETTTTEE---------------------------EEEETTTTEEEECBTTSCSCEEE-----
T ss_pred CC-CC-------ccEEEEEeCCCeE---------------------------EEEcCCCCeEEEEeCCCCceEEe-----
Confidence 11 11 1222244433332 22233455677777664432211
Q ss_pred cccCCCCCEEEEEEeCCceEEEEEECCC-CEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEE-ECCCeEEEEEC
Q 002234 831 KLLGKANPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQ 905 (949)
Q Consensus 831 ~~~~h~~~V~~l~~~~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sg-s~dg~I~vwd~ 905 (949)
..........++++|.+.++..+.... ..|..+++.......... .-...+.++++++ .|+.+ +..+.|..+|+
T Consensus 197 -~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 197 -LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp -ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred -ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 112234678999997544433333332 488888876443333222 3456889999865 55554 45678999998
Q ss_pred CCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 906 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 906 ~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
........+ .........+++. .+..+++-...+.|..++
T Consensus 276 dG~~~~~~~-~~~~~~P~giav~-~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 276 DGSHRKAVI-SQGLPHPFAITVF-EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TSCSCEEEE-CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCeeEEEE-ECCCCCceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence 754433333 2233456778883 455556666677787776
No 380
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.65 E-value=0.051 Score=58.76 Aligned_cols=231 Identities=10% Similarity=-0.008 Sum_probs=122.9
Q ss_pred CCceEEEEEeCCEEEEEeCCCcEEEEecCCC-ceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eE
Q 002234 668 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IH 745 (949)
Q Consensus 668 ~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~-~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~-~~ 745 (949)
...+.+|.|.++.++.++.+|.|.. ..+.+ .++.+.....+.+.+..+.+.+++..++.+ .+|.|.. ..+.|+ ..
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence 4578999999885555667776544 22323 223332222344567888888777666655 4554422 222332 22
Q ss_pred EEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeee
Q 002234 746 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 825 (949)
Q Consensus 746 ~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~ 825 (949)
... ......+..+. +.+++. ++..+.+|.+..-+-..+..-..
T Consensus 156 ~~~-~~~~~~~~~~~-------~~~~~~-----------------------------~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 156 ALV-QEAIGVMRNLN-------RSPSGE-----------------------------YVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp EEE-CSCCCCEEEEE-------ECTTSC-----------------------------EEEEETTSSEEEEECTTCSSCEE
T ss_pred Eee-cCCCcceEEEE-------EcCCCc-----------------------------EEEEECCCcEEEEeCCCCCceeE
Confidence 221 12222333333 444444 33333444433322111221111
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-----CCCcEEEEEEcCC-EEEEEECCCe
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGT 899 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~d-~l~sgs~dg~ 899 (949)
. .......+..+.+.+++.+.+.+ .+| .+.+++...++.-..+. ....+..+.+.++ .+++++.+|.
T Consensus 199 ~-----~~~~~~~~~~~~~~~~g~~~~~~-~~G-~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 H-----NRTTSRRLHNMGFTPDGRLWMIV-NGG-KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp E-----ECCSSSCEEEEEECTTSCEEEEE-TTT-EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred C-----CCCCCCccceeEECCCCCEEEEe-CCc-eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCe
Confidence 1 11234578889998887766544 454 77766433233322222 2345888988866 5666666787
Q ss_pred EEEEECCCCcEEEEeccc--cccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 900 VEIWDQKRQIRIETLQTG--TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 900 I~vwd~~~~~~~~~l~~~--h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
| .+..+.|+.-..+... +...+.++.|.+++ .+++++.+|+|.-++
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 7 4555666554444321 23568889997555 466777899887664
No 381
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=4e-05 Score=64.65 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=39.6
Q ss_pred cCcCccccccCce-ecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 20 VCPITTHIFDDPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 20 ~Cpic~~~~~dPv-~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
.|++|.-.+..-. ++||+|.||+.|+..|..++...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5999999888765 56999999999999999887889999998865
No 382
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=0.016 Score=65.53 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=129.6
Q ss_pred CceEEEEEeC-C--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC-CC----cEEEEECC
Q 002234 669 GKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK----TARVWSIG 740 (949)
Q Consensus 669 ~~V~~l~~s~-d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~-Dg----~I~vWd~~ 740 (949)
.....++++| + .|+.+...+.|+.+|..++ . +..+.........++|+++|++|+.+.. ++ .+...+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--Y-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--E-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--E-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 3567889997 2 6666666588999999887 2 3333335566889999999996665554 22 2222332
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCC
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLAT 819 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~ 819 (949)
.+......... . ...+..+++.|++ +.++++ ..++.|..||..+
T Consensus 213 ~g~~~~~~~l~------~-~~~p~giavdp~~----------------------------g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 213 ESGFKVITELT------K-GQNCNGAETHPIN----------------------------GELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp GGTSCSEEEEE------E-CSSCCCEEECTTT----------------------------CCEEEEETTTTEEEEEETTT
T ss_pred CCceeeeeeec------c-CCCceEEEEeCCC----------------------------CEEEEEECCCCEEEEEECCC
Confidence 22111000000 0 0112223344421 224433 3567888888876
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCC--Cee--EEeecC----------------CC
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN--YNM--VGSLPT----------------LS 879 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~--~~~--~~~~~~----------------~~ 879 (949)
+...... . .+.......++|+|++.++......++.|..++... +.. ...+.. -.
T Consensus 258 ~~~~~~~----~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 332 (430)
T 3tc9_A 258 QETTPLF----T-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH 332 (430)
T ss_dssp TEEEEEE----E-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred CcEEEEE----E-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence 6542211 1 111235678999999986555555556999987653 221 111110 01
Q ss_pred cEE-EEEEc--------CC-EEEEEE-CCCeEEEEECCCCcEEEEecc------c--c--------ccceeEEEEeCC-C
Q 002234 880 EVR-AMVVS--------SE-LVYLGC-KGGTVEIWDQKRQIRIETLQT------G--T--------SGKVQCMALDDN-E 931 (949)
Q Consensus 880 ~v~-~l~~s--------~d-~l~sgs-~dg~I~vwd~~~~~~~~~l~~------~--h--------~~~I~~l~~spd-g 931 (949)
... .+++. ++ .|+.+. .++.|+.++. +|......-. + . -.....++++|+ +
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 411 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE 411 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC
Confidence 233 45553 23 455554 5678999884 5543333211 1 0 114789999995 6
Q ss_pred CEEEEEeCCCcEEEEeC
Q 002234 932 EFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 932 ~~L~sgs~Dg~I~iWdl 948 (949)
.++++-..+++|+.+++
T Consensus 412 ~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 412 CFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEGGGTEEEEEEE
T ss_pred EEEEEECCCCeEEEEcc
Confidence 66666666788888775
No 383
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.51 E-value=0.035 Score=62.71 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=130.4
Q ss_pred CceEEEEEeC----CEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC---Cc-EEEEECC
Q 002234 669 GKVLSIACFR----DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KT-ARVWSIG 740 (949)
Q Consensus 669 ~~V~~l~~s~----d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D---g~-I~vWd~~ 740 (949)
.....++|+| +.|+.+...+.|+.+|..++ .+..+.........++|+++|+++++-... .. +...+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 3567899997 36666655589999999887 233444455668999999999954444321 11 2222211
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE-CCCcEEEEECCC
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLAT 819 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~ 819 (949)
.+.... . ...-...+..+++.|++ +.|+.+. .++.|+.+|..+
T Consensus 216 ~~~~~~-~-------~~~~~~~P~giavd~~~----------------------------G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 216 SGFTER-L-------SLCNARGAKTCAVHPQN----------------------------GKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp GTTCCE-E-------EEEECSSBCCCEECTTT----------------------------CCEEECBTTCSEEEEECTTT
T ss_pred CCeecc-c-------cccccCCCCEEEEeCCC----------------------------CeEEEEECCCCEEEEEECCC
Confidence 110000 0 00000111222244411 2344443 456788888887
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECC--CCeeE--EeecC----------------CC
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS--NYNMV--GSLPT----------------LS 879 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~--~~~~~--~~~~~----------------~~ 879 (949)
+........ .+....-..++++|++.++..+....+.|..++.. ++... ..+.. -.
T Consensus 260 g~~~~~~~~----~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 260 GTLTEEEVM----MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp CCEEEEEEE----CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred CeEEEEEec----cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence 765221110 11112334799999988555555555699998865 23210 11110 12
Q ss_pred cEEEEEE---------cCC-EEEEEE-CCCeEEEEECCCCcEEEEecccc----------------ccceeEEEEe-CCC
Q 002234 880 EVRAMVV---------SSE-LVYLGC-KGGTVEIWDQKRQIRIETLQTGT----------------SGKVQCMALD-DNE 931 (949)
Q Consensus 880 ~v~~l~~---------s~d-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h----------------~~~I~~l~~s-pdg 931 (949)
....+++ .++ .++.+. .++.|+.++. +|......-.+. -.....|+++ ++|
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 414 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK 414 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC
Confidence 4677888 555 455554 5678999985 554332221110 1236789999 677
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 002234 932 EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 932 ~~L~sgs~Dg~I~iWdl~ 949 (949)
.++++-..+++|+.++++
T Consensus 415 ~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 415 CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEecC
Confidence 766666677889888753
No 384
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.50 E-value=0.074 Score=57.24 Aligned_cols=223 Identities=9% Similarity=0.004 Sum_probs=127.2
Q ss_pred CCCeEEEecCCc---eeeecCCCCceEEEEEeC--C-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEec-C
Q 002234 649 DSSADFWNHREL---VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-S 721 (949)
Q Consensus 649 dg~I~vWd~~~~---~~~~~~h~~~V~~l~~s~--d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fsp-d 721 (949)
...|+..++... ..........+.+++|.+ + ++++-...+.|..++..++.. ....+...-.....+++.+ +
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-CCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-eEEEEcCCCCCccEEEEEcCC
Confidence 466888887632 222222334577899987 3 555666778999999887621 1112222234567789987 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 722 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 722 g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
+++.++-...+.|.+++.+......+.. ........++ +.|.+..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~gia-------vdp~~g~--------------------------- 135 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIA-------LDPSSGF--------------------------- 135 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEE-------EEGGGTE---------------------------
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEE-------EeCCCCE---------------------------
Confidence 5555666667889999987653222211 1112223333 5554443
Q ss_pred EEEEEE--CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CC
Q 002234 802 KVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL 878 (949)
Q Consensus 802 ~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~ 878 (949)
++.+. ..+.|..+++......... ...-...+.+++++++..+..+....+.|..+|+.......... ..
T Consensus 136 -ly~td~~~~~~I~r~~~dG~~~~~~~------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 208 (318)
T 3sov_A 136 -MYWTDWGEVPKIERAGMDGSSRFIII------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL 208 (318)
T ss_dssp -EEEEECSSSCEEEEEETTSCSCEEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCC
T ss_pred -EEEEecCCCCEEEEEEcCCCCeEEEE------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCC
Confidence 33333 2355666666532221111 11124578999997554444444444599999986433222222 34
Q ss_pred CcEEEEEEcCCEEE-EEECCCeEEEEECCCCcEEEEe
Q 002234 879 SEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 879 ~~v~~l~~s~d~l~-sgs~dg~I~vwd~~~~~~~~~l 914 (949)
.....+++..+.++ +-...+.|..+|..+|+....+
T Consensus 209 ~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 209 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp SCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 56778888887544 4446689999999877655544
No 385
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.45 E-value=0.15 Score=54.69 Aligned_cols=212 Identities=12% Similarity=0.021 Sum_probs=117.3
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCC----eeEEEEeecCCCceeeeeec
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNE----EIHCVQVHDIKDQIQNLAVS 762 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~-~L~Sgs~Dg~I~vWd~~~~----~~~~~~~~~~~~~v~~l~~~ 762 (949)
..|+..|+.+. .....+. .......++|+++++ ..++-..++.|..++..+. ....+. ...-.....
T Consensus 10 ~~I~~i~~~~~--~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~g---- 81 (316)
T 1ijq_A 10 HEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDG---- 81 (316)
T ss_dssp SSEEEEETTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCE----
T ss_pred CeEEEEECCCc--ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCcCE----
Confidence 56899999887 3333333 445678999998655 4455555788999988762 111110 000011111
Q ss_pred cceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCceeeeecccccccCCCCCEEE
Q 002234 763 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 841 (949)
Q Consensus 763 ~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 841 (949)
+++.+.+ +.++.. ..++.|.++|+......... .........
T Consensus 82 ---lavd~~~----------------------------~~ly~~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~ 124 (316)
T 1ijq_A 82 ---LAVDWIH----------------------------SNIYWTDSVLGTVSVADTKGVKRKTLF------RENGSKPRA 124 (316)
T ss_dssp ---EEEETTT----------------------------TEEEEEETTTTEEEEEETTSSSEEEEE------ECTTCCEEE
T ss_pred ---EEEeecC----------------------------CeEEEEECCCCEEEEEeCCCCceEEEE------ECCCCCcce
Confidence 1233222 334433 45677888887654332211 112246789
Q ss_pred EEEeCCceEEEEEECCC-CEEEEEECCCCeeEEee-c-CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEec
Q 002234 842 LQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSL-P-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 842 l~~~~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~-~-~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~ 915 (949)
++++|.+.++..+.... ..|...++.. .....+ . .-...+.++++++ .++.+. ..+.|..+|.+.... ..+.
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~ 202 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL 202 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEe
Confidence 99997444333333322 4788888753 333333 2 3456889999975 555554 567999999975432 2331
Q ss_pred c--ccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 916 T--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 916 ~--~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
. ........+++. .+..+++-...+.|..++
T Consensus 203 ~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence 1 122345778885 355556666677887776
No 386
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.36 E-value=0.13 Score=53.11 Aligned_cols=206 Identities=13% Similarity=0.083 Sum_probs=112.9
Q ss_pred EEecccCCCEEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecC
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYS-GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 782 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~S-gs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g 782 (949)
+.+.+-.+.+..++|+|+++.|++ ...++.|...|.. ++...............++ +.+++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-------~~~~g~~~------- 84 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-------YIGDNQFV------- 84 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-------ECSTTEEE-------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-------EeCCCEEE-------
Confidence 355666678999999998765554 6668888888987 5422222111112233333 44444321
Q ss_pred eEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccc-c--ccCCCCCEEEEEEeCCceEEEEEECCC-
Q 002234 783 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR-K--LLGKANPVHALQVHNGLVYTASTSLDG- 858 (949)
Q Consensus 783 ~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~--~~~h~~~V~~l~~~~~~~~l~s~s~Dg- 858 (949)
++.-.++.+.++++.....+....... . ...+......+++++.+..+..+...+
T Consensus 85 ---------------------vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p 143 (255)
T 3qqz_A 85 ---------------------ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP 143 (255)
T ss_dssp ---------------------EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred ---------------------EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence 222234556666554433211110000 0 112345678999998774444444333
Q ss_pred CEEEEEEC-CCCeeEEee-----c---CCCcEEEEEEcCC---EEEEEECCCeEEEEECCCCcEEEEec--cccc-----
Q 002234 859 AAVKMWST-SNYNMVGSL-----P---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ--TGTS----- 919 (949)
Q Consensus 859 ~~I~iwd~-~~~~~~~~~-----~---~~~~v~~l~~s~d---~l~sgs~dg~I~vwd~~~~~~~~~l~--~~h~----- 919 (949)
..|..|+- .....+..+ . .-..+.+++++|. +++....++.+.++|.. |+.+..+. .+..
T Consensus 144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~ 222 (255)
T 3qqz_A 144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHN 222 (255)
T ss_dssp EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSC
T ss_pred ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccc
Confidence 24555551 011111111 1 2345788999987 56666677889999975 55555442 2211
Q ss_pred -cceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 920 -GKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 920 -~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
..--.|+|.++|+ |+..++.+.++++.
T Consensus 223 ~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 223 IKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred cCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 2568899999998 54557777666553
No 387
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.32 E-value=0.2 Score=51.65 Aligned_cols=213 Identities=10% Similarity=0.064 Sum_probs=121.4
Q ss_pred eecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEec-ccCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002234 663 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWS 738 (949)
Q Consensus 663 ~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd 738 (949)
.+.+-.+.+..++|+|+ +++....++.|...|.. + +.++.+. +-....-.|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 44455678999999984 55557788999999998 6 4555542 1224577888888888777766778899998
Q ss_pred CCCCee-EEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 739 IGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 739 ~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
+..... .........-....-......+++.|.++. |+++.......+|.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~----------------------------L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT----------------------------FWFFKEKNPIEVYKV 149 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE----------------------------EEEEEESSSEEEEEE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE----------------------------EEEEECcCCceEEEE
Confidence 876431 111111100000000000112335555544 444443333333333
Q ss_pred C---CCceeeeeccc-ccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec--CC--------CcEEE
Q 002234 818 A---TGTFATIQTGH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TL--------SEVRA 883 (949)
Q Consensus 818 ~---~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~--~~--------~~v~~ 883 (949)
. .+......... ..-..+...+.+++++|....+...|..++.+..+|.. ++.+..+. .. .....
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 2 11111111100 00011234578999998766555556666799999976 45555544 11 35789
Q ss_pred EEEcCC-EEEEEECCCeEEEEECCC
Q 002234 884 MVVSSE-LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 884 l~~s~d-~l~sgs~dg~I~vwd~~~ 907 (949)
|+|.++ .++..++.+.+++|....
T Consensus 229 ia~d~~G~lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 229 VAMDASGNIYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEECTTCCEEEEETTTEEEEEEC--
T ss_pred eEECCCCCEEEEcCCceEEEEEecC
Confidence 999998 677778888888876543
No 388
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.28 E-value=0.25 Score=60.00 Aligned_cols=227 Identities=9% Similarity=-0.066 Sum_probs=127.3
Q ss_pred CCCCeEEEecCC-ceeeecCCCCceEEEEEeC--C-EEEEEeCCCcEEEEecCCCce--eeeEEecccCCCEEEEEEecC
Q 002234 648 HDSSADFWNHRE-LVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQS 721 (949)
Q Consensus 648 ~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~--d-~lasgs~Dg~I~vWd~~t~~~--~~i~~l~~H~~~V~~v~fspd 721 (949)
....|+..++.. ....+......+.+++|.+ + ++++-...+.|+.+++.+... .....+.........|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 345577777652 2223334456788999987 3 555556678899999875310 122233334456678999886
Q ss_pred CC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 722 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 722 g~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
++ +.++-...+.|.+.+++......+... .-.....|+ +.|.+..|.+..+.
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~-~l~~P~gIa-------VDp~~g~LYwtD~g------------------- 534 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIV-------VDPVHGFMYWTDWG------------------- 534 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEE-------EETTTTEEEEEECS-------------------
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeC-CCCCcceEE-------EecCCCCEEEecCC-------------------
Confidence 64 455555678899999876543222211 111223333 55544433222211
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeecC---
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--- 877 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~--- 877 (949)
..+.|...++......... ...-...+.|++++....+..+......|...++........+..
T Consensus 535 -------~~~~I~~~~~dG~~~~~lv------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~ 601 (791)
T 3m0c_C 535 -------TPAKIKKGGLNGVDIYSLV------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601 (791)
T ss_dssp -------SSCEEEEEETTSCCEEEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred -------CCCeEEEEecCCCceEEEE------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence 1245666666543332111 112256889999965444444444445899999865443333322
Q ss_pred CCcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEe
Q 002234 878 LSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 878 ~~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l 914 (949)
-....+|++..+.|+... ..+.|...|..+|+.+..+
T Consensus 602 l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 602 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 245678888888666555 5688999998887665555
No 389
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.28 E-value=0.054 Score=58.29 Aligned_cols=194 Identities=11% Similarity=0.202 Sum_probs=116.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 721 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 721 dg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
...+++....++-+.+||+....+ .... .+.++.+.+-+. |.-.|+.+-
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l---~~~~-~g~~nnVD~r~~---~~l~g~~~d------------------------ 87 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKML---HSYN-TGKLNNVDIRYD---FPLNGKKVD------------------------ 87 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEE---EEEC-CSCEEEEEEEEE---EEETTEEEE------------------------
T ss_pred CccEEEEEcCCCCEEEEcCCCcEE---EEcc-CCCcccEEEecc---cccCCceEe------------------------
Confidence 345677777788899999944322 2222 245666652221 222222110
Q ss_pred CEEEEEE-C--CCcEEEEEC--CCCceeeeeccc-ccccCCCCCEEEEEE--eC-Cc-eEEEEEECCCCEEEEEECC---
Q 002234 801 GKVYCGC-Q--DGAIQEIDL--ATGTFATIQTGH-RKLLGKANPVHALQV--HN-GL-VYTASTSLDGAAVKMWSTS--- 867 (949)
Q Consensus 801 ~~l~sgs-~--Dg~I~iwd~--~~~~~~~~~~~~-~~~~~h~~~V~~l~~--~~-~~-~~l~s~s~Dg~~I~iwd~~--- 867 (949)
.+++.. . +++|.+|++ .++... ..... ..+..-...+..+++ ++ .+ .|+.....+| .+..|++.
T Consensus 88 -la~as~R~~~~n~l~vf~iDp~~~~l~-~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G-~~~q~~l~~~~ 164 (355)
T 3amr_A 88 -IAAASNRSEGKNTIEIYAIDGKNGTLQ-SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG-EFEQYELKADK 164 (355)
T ss_dssp -EEEEEECSTTCCEEEEEEECTTTCCEE-ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS-EEEEEEEEECT
T ss_pred -EEEEeCCCCCCCeEEEEEECCCCCcee-eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC-eEEEEEEEeCC
Confidence 123333 3 578999966 444422 21100 001011145666777 55 34 4677777776 99999882
Q ss_pred ----CCeeEEeecCCCcEEEEEEcCC--EEEEEECCCeEEEEECC-----CCcEEEEeccccc-cceeEEEE--eCCCC-
Q 002234 868 ----NYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-----RQIRIETLQTGTS-GKVQCMAL--DDNEE- 932 (949)
Q Consensus 868 ----~~~~~~~~~~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~-----~~~~~~~l~~~h~-~~I~~l~~--spdg~- 932 (949)
+++.++++...+.+..+.+.+. .++.+-++.-|..+|.+ +++.+..+..++- ..+..|++ .++++
T Consensus 165 ~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 165 NGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp TSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 3467888887788999999875 89999999777777754 3556655533333 36888888 45666
Q ss_pred EEEEEe-CCCcEEEEeC
Q 002234 933 FLVIGT-SDGRIQAWGL 948 (949)
Q Consensus 933 ~L~sgs-~Dg~I~iWdl 948 (949)
+|++++ .+++..+||.
T Consensus 245 yLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEEGGGTEEEEEES
T ss_pred EEEEEcCCCCEEEEEEC
Confidence 666665 5678999986
No 390
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.27 E-value=0.0076 Score=73.52 Aligned_cols=195 Identities=9% Similarity=0.051 Sum_probs=108.9
Q ss_pred CEEEEEEe-cCCCEEEEEeC-CC----cEEEEECCCC-eeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 712 AVTGLAIL-QSGEMLYSGSL-DK----TARVWSIGNE-EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 712 ~V~~v~fs-pdg~~L~Sgs~-Dg----~I~vWd~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.+....|| |||++|+-+.. +| +|+++|+.++ +.. ...+... .....|+|||+.++....+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-------~~~~~~~---~~~~~WspDg~~l~y~~~d~~- 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-------ADKVSGT---NGEIVWGPDHTSLFYVTKDET- 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-------CCCEEEE---CSCCEECSSTTEEEEEEECTT-
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-------CccccCc---eeeEEEecCCCEEEEEEECCC-
Confidence 67889999 99998875433 33 5999999998 511 1111111 123459999988655443210
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCcee--eeecccccccCCCCCEEEEEEeCCceEEEEEECC--CCE
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAA 860 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--g~~ 860 (949)
.....|.++++.++... .++.. .+......+.|+||+.+++..+.+ ...
T Consensus 244 ----------------------~~~~~v~~~~lgt~~~~~~lv~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 296 (751)
T 2xe4_A 244 ----------------------LRENKVWRHVMGKLQSEDVCLYEE-----HNPLFSAFMYKAADTNTLCIGSQSPETAE 296 (751)
T ss_dssp ----------------------CCEEEEEEEETTSCGGGCEEEEEC-----CCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred ----------------------CCCCEEEEEECCCCchhcEEEEec-----CCCceEEEEEECCCCCEEEEEecCCCCce
Confidence 00125777787766421 11111 122345678999999887765532 347
Q ss_pred EEEEECCCC--ee-EEeec--CCCcEEEEEEc-CCEEEEEE-CC----CeEEEEECCCCcEEEE-ecccccc--ceeEEE
Q 002234 861 VKMWSTSNY--NM-VGSLP--TLSEVRAMVVS-SELVYLGC-KG----GTVEIWDQKRQIRIET-LQTGTSG--KVQCMA 926 (949)
Q Consensus 861 I~iwd~~~~--~~-~~~~~--~~~~v~~l~~s-~d~l~sgs-~d----g~I~vwd~~~~~~~~~-l~~~h~~--~I~~l~ 926 (949)
|.++|+.++ .. +..+. ......++.|+ .+.++..+ .+ ..|..+|..++..... +. .|.. .+..+.
T Consensus 297 l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~ 375 (751)
T 2xe4_A 297 VHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIA 375 (751)
T ss_dssp EEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEE
T ss_pred EEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEE
Confidence 888999875 22 13332 23455666644 34444433 32 3677788765322222 21 2222 455565
Q ss_pred EeCCCCEEEEEeCCCcEEEE
Q 002234 927 LDDNEEFLVIGTSDGRIQAW 946 (949)
Q Consensus 927 ~spdg~~L~sgs~Dg~I~iW 946 (949)
+. .+.++++...||..++|
T Consensus 376 ~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 376 VR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EC-SSEEEEEEEETTEEEEE
T ss_pred EE-CCEEEEEEEeCCEEEEE
Confidence 54 23455667778865554
No 391
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.26 E-value=0.24 Score=53.32 Aligned_cols=229 Identities=12% Similarity=0.110 Sum_probs=120.5
Q ss_pred CCCceEEEEEeCC-EEEEEeCCCcEEEEecCCC-ceeeeEE-ecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 002234 667 ENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGS-ILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 743 (949)
Q Consensus 667 h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~-~~~~i~~-l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~ 743 (949)
....+.+|.|.++ .++.++.+|.|. +..+.+ .++.+.. .......+.+|.|++ +. ++.++.+|.|.. ..+.|+
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCCcEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 3457999999753 333366778663 333433 2223221 112345688999976 44 444556665433 333342
Q ss_pred -eEEEEee-cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCc
Q 002234 744 -IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 821 (949)
Q Consensus 744 -~~~~~~~-~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~ 821 (949)
....... .....+..+. +.+ ++.++.++.+|.|..- ...|+
T Consensus 110 tW~~~~~~~~~~~~~~~i~-------~~~-----------------------------~~~~~~~~~~g~v~~S-~DgG~ 152 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIK-------ALG-----------------------------NGSAEMITNVGAIYRT-KDSGK 152 (327)
T ss_dssp SCEECCCCTTCSSCEEEEE-------EEE-----------------------------TTEEEEEETTCCEEEE-SSTTS
T ss_pred CceECccccCCCCCeEEEE-------EEC-----------------------------CCCEEEEeCCccEEEE-cCCCC
Confidence 1111111 0111222221 222 2334444455543221 12233
Q ss_pred eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC--CCCeeEEeecCCCcEEEEEEcCC-EEEEEECCC
Q 002234 822 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGG 898 (949)
Q Consensus 822 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~s~d-~l~sgs~dg 898 (949)
.-.. ...++...+..+.+.+++.+++.+. +|...+-+|- .+.+.+. ......+..+.+.++ .++.++.+|
T Consensus 153 tW~~-----~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 153 NWQA-----LVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp SEEE-----EECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTT
T ss_pred CCEE-----eecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCc
Confidence 2211 1123345788999998888877654 4445555553 3444442 234567888988877 677777889
Q ss_pred eEEEEECCCCcEEEEeccc---cccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 899 TVEIWDQKRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 899 ~I~vwd~~~~~~~~~l~~~---h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
.+++++.+.++....+... +...+.++.+.+++..++++. +|.|.
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 8888754435443333222 223588999998887666654 67663
No 392
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.24 E-value=0.0042 Score=62.55 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=122.8
Q ss_pred cCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCc
Q 002234 210 VESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 285 (949)
Q Consensus 210 ~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 285 (949)
....++.|+.+|+.+ +..|+..|..+.. -+.++.|+..|.... .. -..+++..|..+
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~-~~------vr~~a~~aL~~~----- 77 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED-AW------VRRAAADALGQI----- 77 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSC-HH------HHHHHHHHHHHH-----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCC-HH------HHHHHHHHHHhh-----
Confidence 455678888888776 5667777777654 244588888887542 11 112233333322
Q ss_pred ccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHH
Q 002234 286 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 365 (949)
Q Consensus 286 ~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 365 (949)
....+++.|++.++..+.+.|..|+..|...- +...++.|+.++...+...|..|+..
T Consensus 78 -----------~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~a 135 (211)
T 3ltm_A 78 -----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFA 135 (211)
T ss_dssp -----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 23578899999999999999999999887552 23456788888888888888888877
Q ss_pred HHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 002234 366 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 445 (949)
Q Consensus 366 l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~ 445 (949)
|..+-. -..+..|..+|+...+.-+..++..|..+. .+++++.|...|.+
T Consensus 136 L~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d 185 (211)
T 3ltm_A 136 LGEIGD-------------------ERAVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAET 185 (211)
T ss_dssp HHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHH
T ss_pred HHHcCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhC
Confidence 776621 122344666665555555556677777662 26789999999986
Q ss_pred CCChHHHHHHHHHHHhcCccccc
Q 002234 446 SDYPAAQLAAAKTIVSLQGRFTT 468 (949)
Q Consensus 446 ~~~~~~~~~~~~~l~~l~~~~~~ 468 (949)
++ +.++..|+++|..+++....
T Consensus 186 ~~-~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 186 GT-GFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp CC-HHHHHHHHHHHHC-------
T ss_pred CC-HHHHHHHHHHHHhcCCCCCC
Confidence 54 57898999999998776443
No 393
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.23 E-value=0.29 Score=62.11 Aligned_cols=299 Identities=9% Similarity=0.011 Sum_probs=154.7
Q ss_pred ccEEEEecCCCCeEEEecCCc--ee-eecCCCCceEEEEEeC--------CEEEEEeC-CCcEEEEecCCCceeeeEEec
Q 002234 640 MVKVLSNGHDSSADFWNHREL--VH-VDSSENGKVLSIACFR--------DKIFSGHS-DGTIKVWTGRGSILHLIQQIR 707 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~--~~-~~~~h~~~V~~l~~s~--------d~lasgs~-Dg~I~vWd~~t~~~~~i~~l~ 707 (949)
+.+++.+. ++.+.++..+.. .. ....-.+.|.|+++.+ ++++.|.. |++|+|+++.+.+......+.
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG 601 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence 34555553 566766665421 11 1112356899999874 38999997 999999999876322223332
Q ss_pred ccCCCEEEEEEec--CCCEEEEEeCCCcEEEEEC--CCCeeEEEEeec-CCCceeeeee--ccceEEEEeCCCEEEEEEe
Q 002234 708 EHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSI--GNEEIHCVQVHD-IKDQIQNLAV--SNSILCFIPQGAGIKVHLR 780 (949)
Q Consensus 708 ~H~~~V~~v~fsp--dg~~L~Sgs~Dg~I~vWd~--~~~~~~~~~~~~-~~~~v~~l~~--~~~~~~fsp~g~~l~~~~~ 780 (949)
. .....++.+.. ...+|..|-.||.+.-+.+ .+|++....... ...++.-..+ ......|....+-..+...
T Consensus 602 ~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~ 680 (1158)
T 3ei3_A 602 G-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS 680 (1158)
T ss_dssp S-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES
T ss_pred C-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc
Confidence 2 22344444433 3457889999998765544 455433221111 1222221111 1111122221111111222
Q ss_pred cCeEEEecCC-CCceEE-EEe----CCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 781 NGKTKLLNSS-KYPKCL-ALV----QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 781 ~g~i~~~~~~-~~v~~v-~~~----~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
++.+.+-... ..+..+ .|+ ++.++.. .++.+++..+.+-..... +++ .-...+..++++|+...++..
T Consensus 681 ~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~----~~i-pL~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 681 NHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHI----RTV-PLYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp SSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEE----EEE-ECSSEEEEEEEEGGGTEEEEE
T ss_pred CCceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeE----EEE-eCCCCceEEEEcCCCCEEEEE
Confidence 3333322211 123222 332 3445544 455688887754332211 111 112456677777654433222
Q ss_pred EC------------------------------------------------CCCEEEEEECCCCeeEEeec--CCCcEEEE
Q 002234 855 SL------------------------------------------------DGAAVKMWSTSNYNMVGSLP--TLSEVRAM 884 (949)
Q Consensus 855 s~------------------------------------------------Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l 884 (949)
.. ..+.|++.|..+++.+..+. ....+.++
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv 834 (1158)
T 3ei3_A 755 SSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSL 834 (1158)
T ss_dssp EEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEE
T ss_pred EEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEE
Confidence 10 01257888888888776665 34455555
Q ss_pred EE---cC---CEEEEEE----------CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 885 VV---SS---ELVYLGC----------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 885 ~~---s~---d~l~sgs----------~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
+. .. .++++|+ ..|.|++|++..++..........+.|++++-- +|+ |++|- ..+|++|++
T Consensus 835 ~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l 911 (1158)
T 3ei3_A 835 VSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEW 911 (1158)
T ss_dssp EEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEE
T ss_pred EEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEEC
Confidence 53 32 3788886 358899999975554333333456788888643 454 44443 468999986
Q ss_pred C
Q 002234 949 S 949 (949)
Q Consensus 949 ~ 949 (949)
.
T Consensus 912 ~ 912 (1158)
T 3ei3_A 912 T 912 (1158)
T ss_dssp C
T ss_pred C
Confidence 3
No 394
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.18 E-value=0.013 Score=58.39 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred hhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhH
Q 002234 300 KVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNE 379 (949)
Q Consensus 300 g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~ 379 (949)
.+++.|++.++..+...|..|+..|...- +...++.++.++...+...|..|+..|..+-. .
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---- 137 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---E---- 137 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---G----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---H----
Confidence 44555555555555555555555554331 11233455555555555555555555544411 0
Q ss_pred HHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002234 380 QILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 459 (949)
Q Consensus 380 ~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l 459 (949)
..+..|..+|+...++-+..++..|..+ . .+++++.|...|.+.+ +.++..|.++|
T Consensus 138 ------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~---~--------~~~~~~~L~~~l~d~~-~~vr~~A~~aL 193 (201)
T 3ltj_A 138 ------------RAVEPLIKALKDEDGWVRQSAADALGEI---G--------GERVRAAMEKLAETGT-GFARKVAVNYL 193 (201)
T ss_dssp ------------GGHHHHHHHTTCSSHHHHHHHHHHHHHH---C--------SHHHHHHHHHHHHHCC-HHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHcCCCHHHHHHHHHHHHHh---C--------chhHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 1112233333333333333445555544 1 3568888888887654 56788899999
Q ss_pred HhcCccc
Q 002234 460 VSLQGRF 466 (949)
Q Consensus 460 ~~l~~~~ 466 (949)
..+....
T Consensus 194 ~~l~~~~ 200 (201)
T 3ltj_A 194 ETHKSLI 200 (201)
T ss_dssp HHCC---
T ss_pred HHHHhhc
Confidence 8887654
No 395
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.16 E-value=0.19 Score=53.99 Aligned_cols=217 Identities=11% Similarity=0.050 Sum_probs=118.6
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCee-EEEEeecCCCceeeeeeccc
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNS 764 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~-~~~~~~~~~~~v~~l~~~~~ 764 (949)
...|+..|+.+........+ ........++|++. +.+.++-...+.|..++..++.. ..+.... -. .+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~-------~p~ 82 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL-------SPD 82 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CS-------CCC
T ss_pred cCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CC-------Ccc
Confidence 45789999987621111222 22345678999985 45555555678888888876521 0111000 00 111
Q ss_pred eEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEE
Q 002234 765 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 843 (949)
Q Consensus 765 ~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 843 (949)
.+++.+.+. .|+.. ...+.|.++++......... .........++
T Consensus 83 glavd~~~g----------------------------~ly~~d~~~~~I~~~~~dG~~~~~l~------~~~~~~P~gia 128 (318)
T 3sov_A 83 GLACDWLGE----------------------------KLYWTDSETNRIEVSNLDGSLRKVLF------WQELDQPRAIA 128 (318)
T ss_dssp EEEEETTTT----------------------------EEEEEETTTTEEEEEETTSCSCEEEE------CSSCSSEEEEE
T ss_pred EEEEEcCCC----------------------------eEEEEECCCCEEEEEECCCCcEEEEE------eCCCCCccEEE
Confidence 222333222 33333 34567888887654332111 12235678999
Q ss_pred EeCCceEEEEEE-CCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEE-ECCCeEEEEECCCCcEEEEecccc
Q 002234 844 VHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGT 918 (949)
Q Consensus 844 ~~~~~~~l~s~s-~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sg-s~dg~I~vwd~~~~~~~~~l~~~h 918 (949)
++|.+.++..+. .+...|...++.......... .-...+.++++++ .++.+ +..+.|..+|++.... ..+..+.
T Consensus 129 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~ 207 (318)
T 3sov_A 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGS 207 (318)
T ss_dssp EEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSC
T ss_pred EeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCC
Confidence 997544333333 223488888876432222222 3456789999975 55555 4568999999875433 2332233
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEeC
Q 002234 919 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl 948 (949)
......+++.. +..+++-...+.|..++.
T Consensus 208 ~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 208 LPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 34567777753 345555556677777764
No 396
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.12 E-value=0.0098 Score=62.75 Aligned_cols=220 Identities=10% Similarity=0.026 Sum_probs=141.7
Q ss_pred hHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHH
Q 002234 168 AVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLI 243 (949)
Q Consensus 168 ~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~ 243 (949)
..++.++..|- +.+..+...|+..|.++.. +..++.|+.+|+.. +..|+.+|..+...+..
T Consensus 23 ~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~-- 87 (280)
T 1oyz_A 23 LNDDELFRLLD-DHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-- 87 (280)
T ss_dssp SCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--
T ss_pred hhHHHHHHHHH-cCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--
Confidence 34566777775 4688889999999998842 24578888999775 56788888888754332
Q ss_pred HhhhhHHHHHHHH----hccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHH
Q 002234 244 EMDMMESLMTVIK----KKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIA 319 (949)
Q Consensus 244 ~~~~~~~lv~~l~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~ 319 (949)
.+.++.+|. +..+.. -..+++..|..+-... .......++.|+..++..+...|..
T Consensus 88 ----~~~l~~~L~~~~~~d~~~~------vr~~a~~aL~~l~~~~----------~~~~~~~~~~L~~~l~d~~~~vR~~ 147 (280)
T 1oyz_A 88 ----EDNVFNILNNMALNDKSAC------VRATAIESTAQRCKKN----------PIYSPKIVEQSQITAFDKSTNVRRA 147 (280)
T ss_dssp ----HHHHHHHHHHHHHHCSCHH------HHHHHHHHHHHHHHHC----------GGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred ----chHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHhccC----------CcccHHHHHHHHHHhhCCCHHHHHH
Confidence 223333332 211111 1223333343331000 1123467899999999999999999
Q ss_pred HHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHH
Q 002234 320 AVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 399 (949)
Q Consensus 320 a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~ 399 (949)
|+..|...- +...+++|+.++.+.+...|..|+..|..+-.. .-.....|+.
T Consensus 148 a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------------~~~~~~~L~~ 199 (280)
T 1oyz_A 148 TAFAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYD-----------------NSDIRDCFVE 199 (280)
T ss_dssp HHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHH
T ss_pred HHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----------------cHHHHHHHHH
Confidence 998887542 134678999999888888888888877665211 1123345666
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Q 002234 400 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 464 (949)
Q Consensus 400 ~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 464 (949)
.|+...++-+..++..|..+. .+++++.|+..|...+ ++..|+++|..++.
T Consensus 200 ~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 200 MLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD 250 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC
T ss_pred HhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc
Confidence 666555555666777777663 3468999999998765 46678999988865
No 397
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.07 E-value=0.018 Score=68.98 Aligned_cols=108 Identities=8% Similarity=0.080 Sum_probs=69.2
Q ss_pred cccEEEEecCCC-----------CeEEEecCCc-----eeeecCCCCceEEEEEeCC--EEEEEe-CCCcEEEEecCCCc
Q 002234 639 EMVKVLSNGHDS-----------SADFWNHREL-----VHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRGSI 699 (949)
Q Consensus 639 ~~~~l~s~s~dg-----------~I~vWd~~~~-----~~~~~~h~~~V~~l~~s~d--~lasgs-~Dg~I~vWd~~t~~ 699 (949)
++..++.||.+. .+.+||+.+. ......+.....++++..+ +++.|+ .++.+.+||..++.
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 677777777543 4778887631 1122233444445666654 777777 45689999999986
Q ss_pred eeeeEEecccCCCEEEEEEecCCCEEEEEe-CC-----CcEEEEECCCCeeEEE
Q 002234 700 LHLIQQIREHTKAVTGLAILQSGEMLYSGS-LD-----KTARVWSIGNEEIHCV 747 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs-~D-----g~I~vWd~~~~~~~~~ 747 (949)
+..+..+..... -.++++.++|++++.|+ .+ ..+.+||..+++...+
T Consensus 277 W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 277 WIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp EEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred eeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 655544432222 23455667999999998 44 5799999999864443
No 398
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.07 E-value=0.38 Score=53.48 Aligned_cols=219 Identities=12% Similarity=0.037 Sum_probs=120.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCe----eEEEEeecCCC
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEE----IHCVQVHDIKD 754 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L-~Sgs~Dg~I~vWd~~~~~----~~~~~~~~~~~ 754 (949)
+|+.+. ...|+..|+.+.. ....+ .....+..++|++.+..| ++-...+.|+.+++.... ...+.. ..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~--~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~-- 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RD-- 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS--CEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SS--
T ss_pred eeEEec-cceeEEEccCCcc--eeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CC--
Confidence 343333 4678999998763 22223 345678899999865544 444556788888876521 011100 00
Q ss_pred ceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEe--CCEEEEE-ECCCcEEEEECCCCceeeeeccccc
Q 002234 755 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCG-CQDGAIQEIDLATGTFATIQTGHRK 831 (949)
Q Consensus 755 ~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~--~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~ 831 (949)
...+..++++ .+.|+.. ...+.|.+.|+.........
T Consensus 158 -----------------------------------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~----- 197 (400)
T 3p5b_L 158 -----------------------------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----- 197 (400)
T ss_dssp -----------------------------------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----
T ss_pred -----------------------------------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----
Confidence 1122233333 2334433 34567888887755433221
Q ss_pred ccCCCCCEEEEEEeCCc-eEEEEEECCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECC
Q 002234 832 LLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK 906 (949)
Q Consensus 832 ~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~ 906 (949)
.........|+++|.+ .+..+-..+...|...++........+. .-...+.++++++ .|+.+. ..+.|..+|++
T Consensus 198 -~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 198 -RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp -ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 1123457899999854 4434332222478888876443333333 3467899999965 565554 56789999987
Q ss_pred CCcEEEEecc-ccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 907 RQIRIETLQT-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 907 ~~~~~~~l~~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
.......... +......++++. .+..+++-...+.|..+|
T Consensus 277 G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 277 GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 5543332221 122345567763 344555666667787776
No 399
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00056 Score=55.61 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=38.8
Q ss_pred cccCcCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCCC
Q 002234 18 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQKLSS 65 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~~-~~~CP~c~~~~~~ 65 (949)
--.|+||.+++..=..- .|||.|=..||.+|+... +..||.|++....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35699999999744432 799999999999999764 3689999988763
No 400
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.23 Score=56.42 Aligned_cols=245 Identities=13% Similarity=0.086 Sum_probs=128.8
Q ss_pred ceEEEEEeC-C--EEEEE-eCCCcEEEEecCCCceeeeEEec-ccCCCEEEEEE-------ecCCCEEEEEeCCC-c---
Q 002234 670 KVLSIACFR-D--KIFSG-HSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAI-------LQSGEMLYSGSLDK-T--- 733 (949)
Q Consensus 670 ~V~~l~~s~-d--~lasg-s~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~~v~f-------spdg~~L~Sgs~Dg-~--- 733 (949)
....|+|+| + .|+.+ ...+.|++.|..++....+.... ........++| +++|++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 2 44444 44567999999987322222211 12235899999 99999666666543 2
Q ss_pred ---EEEEECCC-CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEE-EEEC
Q 002234 734 ---ARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY-CGCQ 808 (949)
Q Consensus 734 ---I~vWd~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~-sgs~ 808 (949)
|.+.+... +...... ....+.. --.+..+++.|++. .|+ +-..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~---~~~~v~~-~~~p~giavdp~~g----------------------------~LYvtd~~ 267 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRS---DIQLIAA-YKQCNGATIHPING----------------------------ELYFNSYE 267 (496)
T ss_dssp EEEEEEEECCTTSCCSTTS---CEEEEEE-ESCCCCEEECTTTC----------------------------CEEEEETT
T ss_pred CceEEEEecCCCCceeecc---cceeecc-CCCceEEEEcCCCC----------------------------eEEEEECC
Confidence 44554333 1110000 0000000 00111222333222 343 4446
Q ss_pred CCcEEEEECC-------CCceeeeecc-----ccc--ccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEEC--CCCeeE
Q 002234 809 DGAIQEIDLA-------TGTFATIQTG-----HRK--LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMV 872 (949)
Q Consensus 809 Dg~I~iwd~~-------~~~~~~~~~~-----~~~--~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~--~~~~~~ 872 (949)
++.|..+|+. ++........ ... ..+.....+.++|+|++.++..+....+.|+.++. .++...
T Consensus 268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~ 347 (496)
T 3kya_A 268 KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI 347 (496)
T ss_dssp TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC
T ss_pred CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec
Confidence 6779999987 5543000000 000 11223456899999999855454445568998654 333210
Q ss_pred --EeecC----------------CCcEE-EEEEc-------CC-EEEEE-ECCCeEEEEECCCCcEEEEecc--------
Q 002234 873 --GSLPT----------------LSEVR-AMVVS-------SE-LVYLG-CKGGTVEIWDQKRQIRIETLQT-------- 916 (949)
Q Consensus 873 --~~~~~----------------~~~v~-~l~~s-------~d-~l~sg-s~dg~I~vwd~~~~~~~~~l~~-------- 916 (949)
..+.+ -.... .++.. ++ .|+++ ..++.|+.++ .+|. +.++-.
T Consensus 348 ~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 348 TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLA 425 (496)
T ss_dssp CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHH
T ss_pred ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccccccc
Confidence 11110 01244 45554 33 34444 5678999999 4554 444411
Q ss_pred -----cc----------ccceeEEEEeCC-CCEEEEEeCCCcEEEEeC
Q 002234 917 -----GT----------SGKVQCMALDDN-EEFLVIGTSDGRIQAWGL 948 (949)
Q Consensus 917 -----~h----------~~~I~~l~~spd-g~~L~sgs~Dg~I~iWdl 948 (949)
+. -.....|+++++ |.+.++=+.+++|+.+++
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 10 023678999997 776666667888998875
No 401
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.93 E-value=0.0027 Score=73.17 Aligned_cols=207 Identities=19% Similarity=0.220 Sum_probs=131.6
Q ss_pred hhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHh---cCCcccc---c-----cc--
Q 002234 225 LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMI---GDSEESI---V-----SS-- 291 (949)
Q Consensus 225 ~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~---~-----~~-- 291 (949)
+..|...|-.++.....-+.-..+|+|+.+|++..+|. +-..++|+-|+ ...+... + .+
T Consensus 39 RR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~--------e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 39 RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS--------EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHCCC--------------CHH
T ss_pred HHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccH--------HHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 45565666666654444444455699999998875442 22233444442 2221110 0 00
Q ss_pred --ch-hhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCC-chhhHhhh-cCchhhHHHHHhcCCcchhHHHHHH
Q 002234 292 --IA-NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK-CRNSIADK-AELAPVMESFMAASDGERFEIVCFL 366 (949)
Q Consensus 292 --~~-~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~-~r~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~~l 366 (949)
+. .-+-+.++|+.|+++|+..+...|..++.+|..++..... ..+.|... ++++.||.+|.+..+.-|..++.+|
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 01 1235678999999999999999999999999888887776 78888855 8999999999998888899999999
Q ss_pred HHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccc-hhHHHHHHhhhccc--CCCCCCccHHHH-HHHHHHH
Q 002234 367 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQC-PVVAGLLLQLDLLA--EPRKMSIYREEA-IDTLISC 442 (949)
Q Consensus 367 ~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~-~~~a~~l~~l~~l~--~~~~~~~~r~~~-~~~l~~~ 442 (949)
.+|... +.++.+.+.-||+| ..|+..++.-..-+- .++..-|.-+..|. .+..+..|||.. ++.|+..
T Consensus 191 ~~Lt~~-----n~~iQklVAFEnaF---e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 191 QALTRS-----NGAIQKIVAFENAF---ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HHHHTT-----CHHHHHHHHHTTHH---HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGG
T ss_pred HHHhcC-----CHHHHHHHHHhccH---HHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 999876 55667777777777 446666655443211 22222222222222 222445677654 7777777
Q ss_pred hhcCC
Q 002234 443 LRNSD 447 (949)
Q Consensus 443 l~~~~ 447 (949)
|..++
T Consensus 263 L~~~~ 267 (651)
T 3grl_A 263 FEVGD 267 (651)
T ss_dssp GCCCS
T ss_pred hCCCc
Confidence 66544
No 402
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.92 E-value=0.86 Score=53.82 Aligned_cols=221 Identities=12% Similarity=0.052 Sum_probs=128.7
Q ss_pred CCCCeEEEecCCc--ee-eecCCCCceEEEEEeCC---EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC
Q 002234 648 HDSSADFWNHREL--VH-VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 721 (949)
Q Consensus 648 ~dg~I~vWd~~~~--~~-~~~~h~~~V~~l~~s~d---~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd 721 (949)
..+.|+..++... .. .....-..+.+++|++. .+++-..++.|..+++++.. ....+.........+++.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~ 90 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWL 90 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeC
Confidence 5567888888632 11 12223457889999984 55566678999999988762 22223222345678899875
Q ss_pred CC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 722 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 722 g~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
+. +.++-...+.|.+.+++......+.... -.....++ +.|....
T Consensus 91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~-l~~P~~ia-------vdp~~G~-------------------------- 136 (628)
T 4a0p_A 91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKD-LDSPRALA-------LDPAEGF-------------------------- 136 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSTTCEEEECSS-CCCEEEEE-------EETTTTE--------------------------
T ss_pred CCEEEEEECCCCEEEEEecCCCcEEEEEeCC-CCCcccEE-------EccCCCe--------------------------
Confidence 54 4455555778888888765322222111 11122222 4444333
Q ss_pred CEEEEEEC--CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-C
Q 002234 801 GKVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T 877 (949)
Q Consensus 801 ~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~ 877 (949)
|+.... .+.|...++......... ......+.|++++++..+..+....+.|...|+..... ..+. .
T Consensus 137 --lY~tD~g~~~~I~r~~~dG~~~~~l~-------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~ 206 (628)
T 4a0p_A 137 --MYWTEWGGKPKIDRAAMDGSERTTLV-------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD 206 (628)
T ss_dssp --EEEEECSSSCEEEEEETTSCSCEEEE-------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC
T ss_pred --EEEeCCCCCCEEEEEeCCCCceEEEE-------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc
Confidence 333331 345555665543322111 12356789999986555544444445999999865433 2222 3
Q ss_pred CCcEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEe
Q 002234 878 LSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 878 ~~~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l 914 (949)
......+++..+.++... ..+.|...|..+++....+
T Consensus 207 l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 207 LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp CSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence 455678888888666665 4789999998777644444
No 403
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.88 E-value=0.33 Score=52.86 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec---ccCCCEEEEEEecC---CCEEEEEeC-C-----CcE
Q 002234 668 NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQS---GEMLYSGSL-D-----KTA 734 (949)
Q Consensus 668 ~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~---~H~~~V~~v~fspd---g~~L~Sgs~-D-----g~I 734 (949)
-.....++|.|+ .++.+..+|.|++++ ++....+..+. ........|+|+|+ +..|+.+.. + +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 345689999997 666667789999998 44323333322 22456889999998 555544433 2 567
Q ss_pred EEEECCCC
Q 002234 735 RVWSIGNE 742 (949)
Q Consensus 735 ~vWd~~~~ 742 (949)
..|+...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 77887654
No 404
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.82 E-value=0.0012 Score=51.44 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=40.3
Q ss_pred CcccCcCccccccCceecCCCc-----cccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTLETGQ-----TYERRAIQEWIER-GNSSCPITRQKLSS 65 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cgh-----tfc~~ci~~~~~~-~~~~CP~c~~~~~~ 65 (949)
++-.|.||++-..+|.+.||.+ -|=+.|+.+|+.. ++..||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4557999999888898889753 7888999999985 56789999988753
No 405
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.73 E-value=0.73 Score=50.17 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEec---ccCCCEEEEEEecC---CCEEEEEeC----C----C
Q 002234 668 NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQS---GEMLYSGSL----D----K 732 (949)
Q Consensus 668 ~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~---~H~~~V~~v~fspd---g~~L~Sgs~----D----g 732 (949)
-.....++|.|+ .|+.+..+|.|+++| .++. ..+..+. ........|+|+|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999987 777777889999997 3453 3333321 22356889999997 444444332 3 5
Q ss_pred cEEEEECCCC
Q 002234 733 TARVWSIGNE 742 (949)
Q Consensus 733 ~I~vWd~~~~ 742 (949)
.|..|+...+
T Consensus 106 ~v~r~~~~~~ 115 (354)
T 3a9g_A 106 RVIRGRLDGS 115 (354)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEECCC
Confidence 6777776654
No 406
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.72 E-value=0.32 Score=54.71 Aligned_cols=102 Identities=9% Similarity=0.157 Sum_probs=59.7
Q ss_pred cEEEEecCCCCeEEEecC-CceeeecCCCCceEEEEEeCC-EEEEEeCCC----c-EEEEecCCCceeeeEEecccCCCE
Q 002234 641 VKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDG----T-IKVWTGRGSILHLIQQIREHTKAV 713 (949)
Q Consensus 641 ~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg----~-I~vWd~~t~~~~~i~~l~~H~~~V 713 (949)
..|+.+...+.|+.++.. ..+............++++++ .|+.+...+ . +...+...+ ......+. .....
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~-~~~~P 230 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLC-NARGA 230 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEE-ECSSB
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-eecccccc-ccCCC
Confidence 344444333889999985 344445555667899999986 344443321 1 333333322 11111221 23345
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCee
Q 002234 714 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI 744 (949)
Q Consensus 714 ~~v~fsp-dg~~L~Sgs~Dg~I~vWd~~~~~~ 744 (949)
..++++| +|.+.++-..++.|+.+|..++..
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 6688999 777666766788999999987753
No 407
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.69 E-value=0.0074 Score=72.73 Aligned_cols=227 Identities=10% Similarity=-0.047 Sum_probs=118.7
Q ss_pred CCCeEEEecCCc-eeeecCCCCceEEEEEeCC--EEE-EEeCCCcEEEEecCCCc--eeeeEEecccCCCEEEEEEecC-
Q 002234 649 DSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIF-SGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQS- 721 (949)
Q Consensus 649 dg~I~vWd~~~~-~~~~~~h~~~V~~l~~s~d--~la-sgs~Dg~I~vWd~~t~~--~~~i~~l~~H~~~V~~v~fspd- 721 (949)
.+.|++.+.... ...+......+.+++|.+. .|+ +-...+.|+.+++.+.. ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 356777777632 2222233455678999873 444 44566889999987610 0112222112223456788754
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCC
Q 002234 722 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 801 (949)
Q Consensus 722 g~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~ 801 (949)
++++++-...+.|.+++........+... ....... +++.|.+..+.+..+
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~~~~P~g-------iavDp~~g~ly~td~--------------------- 515 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFRE-QGSKPRA-------IVVDPVHGFMYWTDW--------------------- 515 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCC-SSCCCCC-------EECCSSSSCCEECCC---------------------
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeC-CCCCcce-------EEEccCCCcEEEccc---------------------
Confidence 45555555678899999876532222111 1111222 335554433221111
Q ss_pred EEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec---CC
Q 002234 802 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TL 878 (949)
Q Consensus 802 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~---~~ 878 (949)
+..+.|..+++......... ...-...+.|++++++..+..+....+.|..+|+........+. ..
T Consensus 516 -----~~~~~I~~~~~dG~~~~~l~------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 584 (699)
T 1n7d_A 516 -----GTPAKIKKGGLNGVDIYSLV------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584 (699)
T ss_dssp -----SSSCCEEBCCSSSCCCCEES------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC
T ss_pred -----CCCCeEEEEeCCCCCeeEEE------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC
Confidence 01245666655432221110 11123466899997644433333334589999986433222222 12
Q ss_pred CcEEEEEEcCCEEE-EEECCCeEEEEECCCCcEEEEec
Q 002234 879 SEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 879 ~~v~~l~~s~d~l~-sgs~dg~I~vwd~~~~~~~~~l~ 915 (949)
.....+++..+.++ +....+.|..+|..+++.+..+.
T Consensus 585 ~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 585 AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 34556777777544 44566899999998888877774
No 408
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.66 E-value=1.6 Score=55.19 Aligned_cols=228 Identities=14% Similarity=0.122 Sum_probs=123.6
Q ss_pred CCceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC------CCEEEEEeC-CCcEEEEECC
Q 002234 668 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS------GEMLYSGSL-DKTARVWSIG 740 (949)
Q Consensus 668 ~~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd------g~~L~Sgs~-Dg~I~vWd~~ 740 (949)
...|...+.++.+++.++ ++.+.+++++.+....+... .-...|.|+++.|. +++++.|.+ |++|+|+++.
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 446888888777776665 67888888876643343332 23568999999863 469999997 9999999998
Q ss_pred CCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEEC--C
Q 002234 741 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL--A 818 (949)
Q Consensus 741 ~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~--~ 818 (949)
+-+..............++. +. ..++ ..++.+|-.||.+..+.+ .
T Consensus 591 ~l~~~~~~~L~~~~~p~si~-------l~---------~~~~-----------------~~~L~igl~dG~l~~~~~d~~ 637 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSIL-------MT---------TFES-----------------SHYLLCALGDGALFYFGLNIE 637 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEE-------EE---------EETT-----------------EEEEEEEETTSEEEEEEECTT
T ss_pred CCCeEEEEECCCCCCCcEEE-------EE---------EeCC-----------------CcEEEEEeCCCeEEEEEEcCC
Confidence 75422222211111222221 11 0011 014778888888765544 4
Q ss_pred CCceeeeecccccccCCCCCEEEEEEeCCc-eEEEEEECCCCEEEEEECCCCeeEEeecCCCcEEEEEEc----CCEEEE
Q 002234 819 TGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS----SELVYL 893 (949)
Q Consensus 819 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s----~d~l~s 893 (949)
+|...... ..+.| ..++.=..+...+ ..+...| +. ...++..+..-....+....--....|+ |+.++.
T Consensus 638 tg~l~d~r---~~~LG-~~pv~L~~~~~~~~~~V~a~s-~r-p~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~ 711 (1158)
T 3ei3_A 638 TGLLSDRK---KVTLG-TQPTVLRTFRSLSTTNVFACS-DR-PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLAL 711 (1158)
T ss_dssp TCCEEEEE---EEECC-SSCCEEEEEESSSCEEEEEES-SS-CEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEE
T ss_pred CCccccce---eEEcC-CCceEEEEEeeCCceeEEEEC-CC-CEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEE
Confidence 55443221 12333 2455544444332 2333332 32 3333433322122222222212233343 456665
Q ss_pred EECCCeEEEEECCCCc--EEEEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 894 GCKGGTVEIWDQKRQI--RIETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 894 gs~dg~I~vwd~~~~~--~~~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
.+ ++.++|..++... .++++. -...+..++++|+.+.++.+..
T Consensus 712 ~~-~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 712 AN-NSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EC-SSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEEE
T ss_pred Ec-CCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEEE
Confidence 55 4559998876533 334443 3457899999999887766553
No 409
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.66 E-value=0.93 Score=54.92 Aligned_cols=215 Identities=11% Similarity=0.005 Sum_probs=114.3
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCee----EEEEeecCCCceeeeee
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEI----HCVQVHDIKDQIQNLAV 761 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd-g~~L~Sgs~Dg~I~vWd~~~~~~----~~~~~~~~~~~v~~l~~ 761 (949)
...|+..++.... ..... .....+..++|++. +.++++-...+.|+.+++..... ..+. ......
T Consensus 403 ~~~Ir~i~l~~~~--~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~------ 472 (791)
T 3m0c_C 403 RHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQA------ 472 (791)
T ss_dssp BSSEEEECTTSCC--CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSC------
T ss_pred ccceeEeeccCCc--ceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCC------
Confidence 4568888887762 22223 34566789999985 44555555667888888875310 1100 000011
Q ss_pred ccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEE-EECCCcEEEEECCCCceeeeecccccccCCCCCEE
Q 002234 762 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 840 (949)
Q Consensus 762 ~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 840 (949)
+..+++.+.++ .|+. -...+.|.+.++......... ........
T Consensus 473 -P~GLAvD~~~~----------------------------~LY~tD~~~~~I~v~~ldG~~~~~l~------~~~l~~P~ 517 (791)
T 3m0c_C 473 -PDGLAVDWIHS----------------------------NIYWTDSVLGTVSVADTKGVKRKTLF------RENGSKPR 517 (791)
T ss_dssp -CCEEEEETTTT----------------------------EEEEEETTTTEEEEEETTSSSEEEEE------ECTTCCEE
T ss_pred -cceeeeeecCC----------------------------cEEEEecCCCeEEEEeCCCCeEEEEE------eCCCCCcc
Confidence 11222333333 3333 344577888887755433221 12234588
Q ss_pred EEEEeCCceEEEEEE-CCCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEE-CCCeEEEEECCCCcEEEEec
Q 002234 841 ALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 915 (949)
Q Consensus 841 ~l~~~~~~~~l~s~s-~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs-~dg~I~vwd~~~~~~~~~l~ 915 (949)
.|+++|...++..+. .....|...++........+. .-...+.|++++. .|+.+. ..+.|..+|+........+.
T Consensus 518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec
Confidence 999998643333332 221488888886544333333 3367889999865 565554 55789999986654433332
Q ss_pred c-ccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 916 T-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 916 ~-~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
. +.-....+|++.. +.++++-...+.|...|
T Consensus 598 ~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 598 DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCCccCCCCEEEEeC-CEEEEEECCCCEEEEEe
Confidence 1 1122345666643 23334444556666554
No 410
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.63 E-value=0.52 Score=50.68 Aligned_cols=194 Identities=15% Similarity=0.215 Sum_probs=114.9
Q ss_pred cccccEEEEecCCCCeEEEecCC-ceeeecCCCCceEEEEEeCCE--------EEE--EeC--CCcEEEEec--CCCcee
Q 002234 637 AFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRDK--------IFS--GHS--DGTIKVWTG--RGSILH 701 (949)
Q Consensus 637 ~~~~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~~s~d~--------las--gs~--Dg~I~vWd~--~t~~~~ 701 (949)
.+..+.++.....+-+.|||... .++.+. .+.+..|..-|++ ++. --. +++|.+|++ .++
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--- 111 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--- 111 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTSCEEEEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---
T ss_pred CCCccEEEEEcCCCCEEEEcCCCcEEEEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---
Confidence 44555676667778899999973 333332 2677887776642 333 333 579999966 444
Q ss_pred eeEEecc------cC-CCEEEEEE--ecC-CC-EEEEEeCCCcEEEEECC---CCe--eEEEEeecCCCceeeeeeccce
Q 002234 702 LIQQIRE------HT-KAVTGLAI--LQS-GE-MLYSGSLDKTARVWSIG---NEE--IHCVQVHDIKDQIQNLAVSNSI 765 (949)
Q Consensus 702 ~i~~l~~------H~-~~V~~v~f--spd-g~-~L~Sgs~Dg~I~vWd~~---~~~--~~~~~~~~~~~~v~~l~~~~~~ 765 (949)
.+..+.. .. ..+..+++ +|. +. +++....+|.+..|++. .+. .+.+..+...+
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs----------- 180 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS----------- 180 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-----------
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-----------
Confidence 2443321 11 55667777 664 44 67888889999999883 221 12222222222
Q ss_pred EEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC--CEEEEEECCCcEEEEECC--C---CceeeeecccccccCCCCC
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLA--T---GTFATIQTGHRKLLGKANP 838 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~--~~l~sgs~Dg~I~iwd~~--~---~~~~~~~~~~~~~~~h~~~ 838 (949)
.+-.+.+.+ +.|+.+-.|..|..||.. + ++.+.... ...-...
T Consensus 181 --------------------------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~----~g~l~aD 230 (355)
T 3amr_A 181 --------------------------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD----GRHLTRD 230 (355)
T ss_dssp --------------------------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS----SSSBCSC
T ss_pred --------------------------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec----CCccccC
Confidence 233334432 568888888777777754 2 22332111 1112236
Q ss_pred EEEEEEe--CCce-EEEEEECCCCEEEEEECC-CCeeEEeec
Q 002234 839 VHALQVH--NGLV-YTASTSLDGAAVKMWSTS-NYNMVGSLP 876 (949)
Q Consensus 839 V~~l~~~--~~~~-~l~s~s~Dg~~I~iwd~~-~~~~~~~~~ 876 (949)
+..|++. +++. |++..+..+.++.+||.. +.+.+..|.
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 8888884 4444 666666555699999997 677777774
No 411
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.63 E-value=1.2 Score=49.11 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=126.7
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceE
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 766 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 766 (949)
..++.|+|+++. ..+..+.- ...|.--.|-.+ +.|+-.+. ..|+-|++.... .....++......+..+ -..
T Consensus 85 g~~lQiFnle~K--~klks~~~-~e~VvfWkWis~-~~l~lVT~-taVyHWsi~~~s-~P~kvFdR~~~L~~~QI--InY 156 (494)
T 1bpo_A 85 GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQI--INY 156 (494)
T ss_dssp TTEEEEEETTTT--EEEEEEEC-SSCCCEEEEEET-TEEEEECS-SEEEEEESSSSC-CCEEEEECCGGGTTCEE--EEE
T ss_pred CCeEEEEchHHh--hhhcceec-CCCceEEEecCC-CeEEEEcC-CeeEEecccCCC-CchhheecchhcccceE--EEE
Confidence 689999999998 66666653 345666667544 44555443 579999997643 22222221111111000 012
Q ss_pred EEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC
Q 002234 767 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 846 (949)
Q Consensus 767 ~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 846 (949)
..+++.++++..+ +.-.++. -.|.+++|..+.+.. ..+.||......+....
T Consensus 157 ~~d~~~kW~~l~G----------------I~~~~~~-----v~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g 208 (494)
T 1bpo_A 157 RTDAKQKWLLLTG----------------ISAQQNR-----VVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEG 208 (494)
T ss_dssp EECTTSSEEEEEE----------------EEEETTE-----EEEEEEEEESTTCCE-------EEECCSEEEEEEEECTT
T ss_pred EECCCCCeEEEEe----------------ecccCCc-----ccceEEEeecccccc-------chheeeeeeeEEEecCC
Confidence 2455666554332 1111222 247889999887665 34556655444444331
Q ss_pred C--ce-EEEEE--ECCCCEEEEEECCCC---e-----eEEe--ec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECC
Q 002234 847 G--LV-YTAST--SLDGAAVKMWSTSNY---N-----MVGS--LP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 847 ~--~~-~l~s~--s~Dg~~I~iwd~~~~---~-----~~~~--~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~ 906 (949)
+ .. .++-+ ...|+.+.|-++... . .... ++ ..+-..++.+|+. .++.-+.-|.|++||++
T Consensus 209 ~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 209 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp CSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence 1 11 11111 223458999998543 1 1111 11 1455678888887 78889999999999999
Q ss_pred CCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 907 RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 907 ~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
++.++..-+ -..+.|..-+-+.+..-++.....|.|.-
T Consensus 289 Tgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 289 TGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLS 326 (494)
T ss_dssp TCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEEEE
T ss_pred cceeeeeec-ccCCceEEecccCCCCcEEEEccCceEEE
Confidence 999988775 34445655555555555666667776643
No 412
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.63 E-value=0.3 Score=51.55 Aligned_cols=228 Identities=11% Similarity=0.120 Sum_probs=113.7
Q ss_pred ccccEEEEec-CC-----CCeEEEecCCceeee----cCCCCceEEEEEeCCEEEEEeCC-----CcEEEEecCCCc---
Q 002234 638 FEMVKVLSNG-HD-----SSADFWNHRELVHVD----SSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSI--- 699 (949)
Q Consensus 638 ~~~~~l~s~s-~d-----g~I~vWd~~~~~~~~----~~h~~~V~~l~~s~d~lasgs~D-----g~I~vWd~~t~~--- 699 (949)
.++..++.|| .+ ..+.+||+.+..... ........++.+....++.|+.+ ..+.+||..++.
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 3455667777 33 367788876422111 11112222333333366667654 468999999886
Q ss_pred eeeeEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCE
Q 002234 700 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 774 (949)
Q Consensus 700 ~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~ 774 (949)
+..+..+......-..+. .+++.++.|+.+ ..+.+||..+++...+........-.+ +...+++.
T Consensus 93 W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~--------~~~~~~~i 162 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG--------LVVASGVI 162 (301)
T ss_dssp CEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE--------EEEETTEE
T ss_pred eEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccce--------EEEECCEE
Confidence 666554432222222222 267777777654 357888888876444432211100000 01112221
Q ss_pred EEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC-----CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCce
Q 002234 775 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 775 l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 849 (949)
++.|+. -..+..||+.+++........ .. ..-.++....+..
T Consensus 163 ----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~-r~~~~~~~~~~~i 209 (301)
T 2vpj_A 163 ----------------------------YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA----TK-RSGAGVALLNDHI 209 (301)
T ss_dssp ----------------------------EEECCBCSSCBCCCEEEEETTTTEEEEECCCS----SC-CBSCEEEEETTEE
T ss_pred ----------------------------EEECCCCCCcccceEEEEeCCCCcEEeCCCCC----cc-cccceEEEECCEE
Confidence 233332 256889999888765432111 11 1112333344444
Q ss_pred EEEEEECCC----CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEECC-----CeEEEEECCCCc
Q 002234 850 YTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 909 (949)
Q Consensus 850 ~l~s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~d-----g~I~vwd~~~~~ 909 (949)
+++ ++.++ ..+.+||+.+.+-.. .++....-.++....+ .++.|+.+ +.+.+||..+.+
T Consensus 210 ~v~-GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 210 YVV-GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEE-CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEE-eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 444 44332 368999998765332 2222211222333344 55556544 468889987754
No 413
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.61 E-value=0.38 Score=50.86 Aligned_cols=228 Identities=13% Similarity=0.167 Sum_probs=112.2
Q ss_pred ccccEEEEecCC----CCeEEEecCCceeee----cCCCCceEEEEEeCCEEEEEeCC-----CcEEEEecCCCceeeeE
Q 002234 638 FEMVKVLSNGHD----SSADFWNHRELVHVD----SSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSILHLIQ 704 (949)
Q Consensus 638 ~~~~~l~s~s~d----g~I~vWd~~~~~~~~----~~h~~~V~~l~~s~d~lasgs~D-----g~I~vWd~~t~~~~~i~ 704 (949)
.++..++.||.+ ..+..||+.+..... ......-..+.+....++.|+.+ ..+.+||..++++..+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 345566677654 356778876422111 11111122233333366667654 35889999998766665
Q ss_pred EecccCCCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEE
Q 002234 705 QIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 779 (949)
Q Consensus 705 ~l~~H~~~V~~v~fspdg~~L~Sgs~Dg-----~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~ 779 (949)
.+......-..+. -++..++.|+.++ .+.+||+.+++...+..... +..... +...+++.
T Consensus 94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~------~~~~~~~i----- 158 (302)
T 2xn4_A 94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT--RRSSVG------VGVVGGLL----- 158 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS--CCBSCE------EEEETTEE-----
T ss_pred CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC--cccCce------EEEECCEE-----
Confidence 5433222222222 2677777887653 47788888876443322111 100000 01112211
Q ss_pred ecCeEEEecCCCCceEEEEeCCEEEEEEC-------CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEE
Q 002234 780 RNGKTKLLNSSKYPKCLALVQGKVYCGCQ-------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 852 (949)
Q Consensus 780 ~~g~i~~~~~~~~v~~v~~~~~~l~sgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 852 (949)
++.|+. -..+.+||+.+++............ -.++....+..+++
T Consensus 159 -----------------------yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~ 210 (302)
T 2xn4_A 159 -----------------------YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGVGVLNNLLYAV 210 (302)
T ss_dssp -----------------------EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEE
T ss_pred -----------------------EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-----cccEEEECCEEEEE
Confidence 222222 2458899998887654321111111 12334445555544
Q ss_pred EEECCC----CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEECC-----CeEEEEECCCCc
Q 002234 853 STSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 909 (949)
Q Consensus 853 s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~d-----g~I~vwd~~~~~ 909 (949)
++.++ ..+.+||+.+.+-.. .++....-.+++...+ .++.|+.+ ..+.+||..+.+
T Consensus 211 -GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 -GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 43332 368899998765332 2222211122333344 55566544 358999998765
No 414
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.04 Score=62.15 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=92.5
Q ss_pred CceEEEEeC---CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCC----EEEEE
Q 002234 792 YPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA----AVKMW 864 (949)
Q Consensus 792 ~v~~v~~~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~----~I~iw 864 (949)
.+..+++++ +.|+++...+.|+.+|+.++...... ........+++++++.++..+...++ .+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 455666663 45777776688999999877654322 23456889999999885555443211 23334
Q ss_pred ECCCCeeE--EeecCCCcEEEEEEcC-C-EEEEEE-CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEE-EEe
Q 002234 865 STSNYNMV--GSLPTLSEVRAMVVSS-E-LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV-IGT 938 (949)
Q Consensus 865 d~~~~~~~--~~~~~~~~v~~l~~s~-d-~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~-sgs 938 (949)
+. .+... ..+........++++| + .++.+. .++.|+.||..++........+.......++|+|+|++|+ +-.
T Consensus 211 ~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 211 TR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 43 22211 2222234456788998 4 555554 6789999999877643323222224578899999999555 445
Q ss_pred CCCcEEEEeC
Q 002234 939 SDGRIQAWGL 948 (949)
Q Consensus 939 ~Dg~I~iWdl 948 (949)
..+.|..++.
T Consensus 290 ~~~~I~~~~~ 299 (430)
T 3tc9_A 290 NQHYILRSDY 299 (430)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEeC
Confidence 6778888764
No 415
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.58 E-value=0.46 Score=50.18 Aligned_cols=225 Identities=12% Similarity=0.180 Sum_probs=110.7
Q ss_pred EEEEEeCC----CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEEEee
Q 002234 680 KIFSGHSD----GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVH 750 (949)
Q Consensus 680 ~lasgs~D----g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~~~~~~~~ 750 (949)
+++.|+.+ ..+..||..++.+..+..+......-..+. -++.+++.|+.+ ..+.+||..+++...+...
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 45555543 468889999886555543332211112222 267777777755 3578888888764443322
Q ss_pred cCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECC-----CcEEEEECCCCceeee
Q 002234 751 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD-----GAIQEIDLATGTFATI 825 (949)
Q Consensus 751 ~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~ 825 (949)
.....-.+. ...+++. ++.|+.+ ..+.+||+.+++....
T Consensus 96 p~~r~~~~~--------~~~~~~i----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 96 RDRRSTLGA--------AVLNGLL----------------------------YAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp SSCCBSCEE--------EEETTEE----------------------------EEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CccccceEE--------EEECCEE----------------------------EEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 111000000 1112222 2333333 2578899988776543
Q ss_pred ecccccccCCCCCEEEEEEeCCceEEEEEECCC-----CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEECC
Q 002234 826 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG-----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG 897 (949)
Q Consensus 826 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg-----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~d 897 (949)
...... ..-.+++...+..|++.+.... ..+.+||+.+.+-.. .++....-.+++...+ .++.|+.+
T Consensus 140 ~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 214 (302)
T 2xn4_A 140 APMNTR-----RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD 214 (302)
T ss_dssp CCCSSC-----CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred CCCCCc-----ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence 211111 1112334445555555443211 258899988765332 2332222223333344 55556543
Q ss_pred -----CeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCC-----cEEEEeC
Q 002234 898 -----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG-----RIQAWGL 948 (949)
Q Consensus 898 -----g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg-----~I~iWdl 948 (949)
+.+.+||..+.+-...-.......-.+++ ..++++++.|+.++ .|.+||+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcC
Confidence 47999999876532211101111111122 23677888887664 3788875
No 416
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.56 E-value=0.046 Score=54.70 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=105.6
Q ss_pred hhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHH
Q 002234 166 KPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRT 241 (949)
Q Consensus 166 ~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~ 241 (949)
.+..++.++..|. +.+..+...++..|.++.. ...++.|+.+|+.. +..|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---- 79 (211)
T ss_dssp CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----
T ss_pred CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 3455677777775 5789999999999998832 35678999999876 5677777777753
Q ss_pred HHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHH
Q 002234 242 LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAV 321 (949)
Q Consensus 242 ~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~ 321 (949)
-+.++.|+..|...+.. -..+++..|..+ .....++.|++.++..+.+.|..|+
T Consensus 80 ---~~~~~~L~~~l~~~~~~-------vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~ 133 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGW-------VRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAA 133 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHH-------HHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHH-------HHHHHHHHHHHh----------------CcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 23457888887553211 122333333322 2356889999999999999999999
Q ss_pred HHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHh
Q 002234 322 GILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 369 (949)
Q Consensus 322 ~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l 369 (949)
..|...- +...++.|+.++.+.+...|..|+..|..+
T Consensus 134 ~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 134 FALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9887651 233567888888877777888888777776
No 417
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.54 E-value=0.72 Score=48.74 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=114.7
Q ss_pred ccEEEEecCC--CCeEEEecCCceeee----cCCCCceEEEEEeCCEEEEEeCC----CcEEEEecCCCceeeeEEeccc
Q 002234 640 MVKVLSNGHD--SSADFWNHRELVHVD----SSENGKVLSIACFRDKIFSGHSD----GTIKVWTGRGSILHLIQQIREH 709 (949)
Q Consensus 640 ~~~l~s~s~d--g~I~vWd~~~~~~~~----~~h~~~V~~l~~s~d~lasgs~D----g~I~vWd~~t~~~~~i~~l~~H 709 (949)
+..++.||.+ ..+.+||+.+..... ......-.++.+...+++.|+.+ ..+.+||..++.+..+..+...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3455666653 567788877422211 11122223333333466777654 6788999999876666554322
Q ss_pred CCCEEEEEEecCCCEEEEEeCC------CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCe
Q 002234 710 TKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 783 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~D------g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~ 783 (949)
...-..+. -++++++.|+.+ ..+.+||..+++............-.+. ...+++.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~i--------- 152 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGM--------VEANGLI--------- 152 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEE--------EEETTEE---------
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEE--------EEECCEE---------
Confidence 22222222 267777888765 4588899888764433221111000000 1112221
Q ss_pred EEEecCCCCceEEEEeCCEEEEEEC---------CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEE
Q 002234 784 TKLLNSSKYPKCLALVQGKVYCGCQ---------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 854 (949)
Q Consensus 784 i~~~~~~~~v~~v~~~~~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 854 (949)
++.|+. -..+.+||+.+++.......... ..-.++....+..+++.+
T Consensus 153 -------------------yv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG 208 (306)
T 3ii7_A 153 -------------------YVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA-----RKNHGLVFVKDKIFAVGG 208 (306)
T ss_dssp -------------------EEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECC
T ss_pred -------------------EEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch-----hhcceEEEECCEEEEEeC
Confidence 222221 35688999998876543211111 111233344555555443
Q ss_pred ECCC---CEEEEEECCCCeeEE--eecCC-CcEEEEEEcCCEEEEEECC-----CeEEEEECCCCc
Q 002234 855 SLDG---AAVKMWSTSNYNMVG--SLPTL-SEVRAMVVSSELVYLGCKG-----GTVEIWDQKRQI 909 (949)
Q Consensus 855 s~Dg---~~I~iwd~~~~~~~~--~~~~~-~~v~~l~~s~d~l~sgs~d-----g~I~vwd~~~~~ 909 (949)
.... ..+.+||+.+.+-.. .++.. .....+.+....++.|+.+ +.+.+||..+.+
T Consensus 209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2211 368899998765332 22222 2233333433366666643 578999998764
No 418
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.53 E-value=0.26 Score=52.50 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=102.1
Q ss_pred CCCceEEEEeC--CEEEEEE-CCCcEEEEECCCCceeeeeccccccc--CC-CCCEEEEEE---eCCceEEEEEEC----
Q 002234 790 SKYPKCLALVQ--GKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLL--GK-ANPVHALQV---HNGLVYTASTSL---- 856 (949)
Q Consensus 790 ~~~v~~v~~~~--~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h-~~~V~~l~~---~~~~~~l~s~s~---- 856 (949)
.-+.-+..|+. +.++.++ ..++|..||...+........ ... +. ...+..|.+ .+++.++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~--~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID--GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT--TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC--CccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 34455666664 6777777 689999999986654432110 100 11 123578999 688877775431
Q ss_pred ---------CCCEEEEEECC---CCeeEEeecC-------------C-CcEEEEEEcCC--EEEEEECC-CeEEEEECCC
Q 002234 857 ---------DGAAVKMWSTS---NYNMVGSLPT-------------L-SEVRAMVVSSE--LVYLGCKG-GTVEIWDQKR 907 (949)
Q Consensus 857 ---------Dg~~I~iwd~~---~~~~~~~~~~-------------~-~~v~~l~~s~d--~l~sgs~d-g~I~vwd~~~ 907 (949)
+ +.|..||+. +++.+....- . .....+++.++ ..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~-~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGA-SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSC-CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCC-CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 3 489999999 7776654431 1 24788999887 45557777 8887777764
Q ss_pred CcEEEEe--cc---ccccceeEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 002234 908 QIRIETL--QT---GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 908 ~~~~~~l--~~---~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWdl~ 949 (949)
.. +..+ .. ......+.|+++|||+.|++...+|.+..+|+.
T Consensus 169 ~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 42 2222 11 111246799999999999988779999998863
No 419
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.50 E-value=0.31 Score=51.46 Aligned_cols=216 Identities=12% Similarity=0.143 Sum_probs=106.0
Q ss_pred CcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCe---eEEEEeecCCCceeee
Q 002234 688 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEE---IHCVQVHDIKDQIQNL 759 (949)
Q Consensus 688 g~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~---~~~~~~~~~~~~v~~l 759 (949)
..+.+||..++++..+..+.........+ ..++.+++.|+.+ ..+.+||..+++ ...+..... +....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~ 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV--RRGLA 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS--CCBSC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC--Cccce
Confidence 46889999988665554443222222222 2367777777765 358888888765 433321111 00000
Q ss_pred eeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEEC-----CCcEEEEECCCCceeeeecccccccC
Q 002234 760 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLG 834 (949)
Q Consensus 760 ~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~ 834 (949)
.+...+++. ++.|+. ...+.+||+.+++............+
T Consensus 107 ------~~~~~~~~l----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 152 (301)
T 2vpj_A 107 ------GATTLGDMI----------------------------YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG 152 (301)
T ss_dssp ------EEEEETTEE----------------------------EEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS
T ss_pred ------eEEEECCEE----------------------------EEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc
Confidence 001112211 223332 24688999988876543221111111
Q ss_pred CCCCEEEEEEeCCceEEEEEECCC----CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEECC-----CeEEE
Q 002234 835 KANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEI 902 (949)
Q Consensus 835 h~~~V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~d-----g~I~v 902 (949)
.++....+..|+ .++.++ ..+.+||+.+.+-.. .++....-.++....+ .++.|+.+ +.+.+
T Consensus 153 -----~~~~~~~~~iyv-~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~ 226 (301)
T 2vpj_A 153 -----AGLVVASGVIYC-LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226 (301)
T ss_dssp -----CEEEEETTEEEE-ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEE
T ss_pred -----ceEEEECCEEEE-ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEE
Confidence 223333444444 444332 368899988765433 2222222223333344 55556543 57999
Q ss_pred EECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC-----CcEEEEeC
Q 002234 903 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 948 (949)
Q Consensus 903 wd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D-----g~I~iWdl 948 (949)
||..+.+-...- ..........+..-++++++.|+.+ ..|.+||+
T Consensus 227 yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 227 YNIRTDSWTTVT-SMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EETTTTEEEEEC-CCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred EeCCCCcEEECC-CCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 999877533221 1111111111222367788888765 35677775
No 420
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.49 E-value=1.1 Score=47.32 Aligned_cols=258 Identities=13% Similarity=0.071 Sum_probs=137.1
Q ss_pred CCCeEEEecCCceeeecCCCCceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEE
Q 002234 649 DSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY 726 (949)
Q Consensus 649 dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~ 726 (949)
+..|.|-|+.......+..-.. -+.-.+|. .+|--. ..++.|+|+++. ..+..+.- ...|.--.|-.+ +.|+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A-dsAIMnP~~~ViALra-g~~LQiFnletK--~klks~~~-~e~VvfWkWis~-~~L~ 121 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA-DSAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVA 121 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC-SEEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCEEEEEECSS-SEEE
T ss_pred CCEEEEEECCCCCCcccccccc-ceeeeCCCccEEEEec-CCeEEEechHHh--hhhcceec-CCccEEEEecCC-CeEE
Confidence 3467777776422221111111 12223553 333333 678999999998 66666643 456777777644 4455
Q ss_pred EEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE
Q 002234 727 SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 806 (949)
Q Consensus 727 Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg 806 (949)
-.+. ..|+-|++.... .....++......... --....+++.++++..+- .-.++.+
T Consensus 122 lVT~-taVyHWs~~~~s-~P~kvFdR~~~L~~~Q--IInY~~d~~~kW~~l~GI----------------~~~~~~v--- 178 (365)
T 2xzh_A 122 LVTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQ--IINYRTDAKQKWLLLTGI----------------SAQQNRV--- 178 (365)
T ss_dssp EEES-SEEEEEESSTTC-CCEEEEECCGGGTTCE--EEEEEECTTSCEEEEEEE----------------EEETTEE---
T ss_pred EEcC-CcEEEEcccCCC-CCceeeecchhcccce--EEEEEECCCCCEEEEEeE----------------eccCCcc---
Confidence 5544 469999997643 2222222111111100 001224556665543321 1112222
Q ss_pred ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeC--C-ceE--EEEEECCCCEEEEEECCCC---ee------E
Q 002234 807 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--G-LVY--TASTSLDGAAVKMWSTSNY---NM------V 872 (949)
Q Consensus 807 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~-~~~--l~s~s~Dg~~I~iwd~~~~---~~------~ 872 (949)
.|.+++|..+.+.. ..+.||......+.+.. . ... ++.-+..|+.+++-++... .+ +
T Consensus 179 --~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~v 249 (365)
T 2xzh_A 179 --VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 249 (365)
T ss_dssp --EEEEEEEETTTTEE-------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEE
T ss_pred --ceeEEEEeeccccc-------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccc
Confidence 36789999886654 33445544333332221 1 111 1222223348888888432 11 1
Q ss_pred E-eec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEE
Q 002234 873 G-SLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 945 (949)
Q Consensus 873 ~-~~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~i 945 (949)
. .++ ..+-..++.+|+. .++.-+.-|.|++||++++.++..-+ -..+.|..-+-+.+..-++.....|.|.-
T Consensus 250 di~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr-IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~ 327 (365)
T 2xzh_A 250 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLS 327 (365)
T ss_dssp EECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTCEEEE
T ss_pred eeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec-cCCCceEEecccCCCCcEEEEcCCCEEEE
Confidence 1 112 1455678888887 78889999999999999999988775 33445555555444445555667776543
No 421
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.49 E-value=0.51 Score=49.96 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=112.5
Q ss_pred EEEEEeC--CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC----CcEEEEECCCCeeEEEEeecCC
Q 002234 680 KIFSGHS--DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIK 753 (949)
Q Consensus 680 ~lasgs~--Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D----g~I~vWd~~~~~~~~~~~~~~~ 753 (949)
+++.|+. ...+.+||..++++..+..+......-..+. -++.+++.|+.+ ..+.+||..+++...+.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~- 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT- 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS-
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc-
Confidence 4555654 3578999999987665554433222222222 366777777755 567888888876443322211
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE-EEEEECC------CcEEEEECCCCceeeee
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQD------GAIQEIDLATGTFATIQ 826 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~-l~sgs~D------g~I~iwd~~~~~~~~~~ 826 (949)
+.... ++...+++ ++.|+.+ ..+.+||+.+++....-
T Consensus 91 -~r~~~-----------------------------------~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 91 -PRDSL-----------------------------------AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp -CCBSC-----------------------------------EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred -cccce-----------------------------------eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 10000 01111222 3334433 46889999988765432
Q ss_pred cccccccCCCCCEEEEEEeCCceEEEEEECC-------CCEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEEC
Q 002234 827 TGHRKLLGKANPVHALQVHNGLVYTASTSLD-------GAAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCK 896 (949)
Q Consensus 827 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-------g~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~ 896 (949)
........ .+++...+..|++.+... -..+.+||..+.+-.. .++....-.++....+ .++.|+.
T Consensus 135 ~~p~~r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 209 (306)
T 3ii7_A 135 SMLTQRCS-----HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQ 209 (306)
T ss_dssp CCSSCCBS-----CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred CCcCCcce-----eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCC
Confidence 11111111 223334555555544321 1258899998765332 2222222223333345 4555543
Q ss_pred C-----CeEEEEECCCCcEEE--EeccccccceeEEEEeCCCCEEEEEeCC-----CcEEEEeC
Q 002234 897 G-----GTVEIWDQKRQIRIE--TLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 948 (949)
Q Consensus 897 d-----g~I~vwd~~~~~~~~--~l~~~h~~~I~~l~~spdg~~L~sgs~D-----g~I~iWdl 948 (949)
+ ..+.+||..+.+-.. .+.. .......+.+ ++++++.|+.+ ..+.+||+
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 2 468999998765222 1211 1111222222 67788888854 45777775
No 422
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.35 E-value=0.00052 Score=71.84 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=38.7
Q ss_pred CcccCcCccccccC----cee----cCCCccccHHHHHHHHhcCC----------CCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDD----PVT----LETGQTYERRAIQEWIERGN----------SSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~d----Pv~----~~cghtfc~~ci~~~~~~~~----------~~CP~c~~~~~ 64 (949)
..-.|+||...+.+ |-. ..|||.|-..|+.+|+.... ..||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45579999999988 533 47999999999999997421 36999999876
No 423
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.30 E-value=1 Score=53.13 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=121.3
Q ss_pred CCCCeEEEecCCc---eeeecCCCCceEEEEEeCC--EE-EEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecC
Q 002234 648 HDSSADFWNHREL---VHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 721 (949)
Q Consensus 648 ~dg~I~vWd~~~~---~~~~~~h~~~V~~l~~s~d--~l-asgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspd 721 (949)
..+.|++.+.... .......-+.+.+++|++. .| ++-...+.|..++.++.. .....+...-.....+++.+.
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEec
Confidence 3566888887632 2333445567889999973 44 454557889999987652 112233333356889999995
Q ss_pred CC-EEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeC
Q 002234 722 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 800 (949)
Q Consensus 722 g~-~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~ 800 (949)
+. +.++-...+.|.+.+.+......+... .-.. |..+++.|.+..+....+.
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~-~l~~-------P~~Iavdp~~g~ly~tD~g------------------- 147 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQ-ELDQ-------PRAIALDPSSGFMYWTDWG------------------- 147 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSC-------CCCEEEETTTTEEEEEECS-------------------
T ss_pred CCEEEEEeCCCCEEEEEECCCCCEEEEEeC-CCCC-------CceEEEecCCCeEEEeccC-------------------
Confidence 54 555556678999999887543222211 1111 2233366655444333321
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEeec-CCC
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS 879 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~~-~~~ 879 (949)
..+.|...++......... .......+.|+++++...+..+......|...|+.......... ...
T Consensus 148 -------~~~~I~r~~~dG~~~~~l~------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~ 214 (619)
T 3s94_A 148 -------EVPKIERAGMDGSSRFIII------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 214 (619)
T ss_dssp -------SSCEEEEEETTSCSCEEEE------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred -------CCCEEEEEECCCCceEEEE------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC
Confidence 1234444444322221111 11234678999997544444444344588888886543322222 223
Q ss_pred cEEEEEEcCCEEEEEE-CCCeEEEEECCCCcEEEEe
Q 002234 880 EVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 914 (949)
Q Consensus 880 ~v~~l~~s~d~l~sgs-~dg~I~vwd~~~~~~~~~l 914 (949)
...++++.++.++... .++.|...|..+++....+
T Consensus 215 ~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 215 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp -CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEE
Confidence 3457788888666554 5678999999887655444
No 424
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.20 E-value=0.5 Score=50.34 Aligned_cols=136 Identities=10% Similarity=-0.010 Sum_probs=76.7
Q ss_pred CCcEEEEECC---CCceeeeecccccc------cC-CCCCEEEEEEeCCceEEEEEECC-CCEEEEEECCCCeeEEeec-
Q 002234 809 DGAIQEIDLA---TGTFATIQTGHRKL------LG-KANPVHALQVHNGLVYTASTSLD-GAAVKMWSTSNYNMVGSLP- 876 (949)
Q Consensus 809 Dg~I~iwd~~---~~~~~~~~~~~~~~------~~-h~~~V~~l~~~~~~~~l~s~s~D-g~~I~iwd~~~~~~~~~~~- 876 (949)
++.+..||+. +++........... .+ -....+.++..++|...++.+.. + .|...+.... .+..+.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~-~I~rV~pdG~-~~~~~~~ 176 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP-AIARVSADGK-TVSTFAW 176 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-EEEEECTTSC-CEEEEEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC-eEEEEeCCCC-EEeeeee
Confidence 6779999998 77765433211101 11 12358899999998887877655 4 5555555432 222211
Q ss_pred ------CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcE--EEEecccc---ccceeE-EEEeCCCCE-EEEEeCCC
Q 002234 877 ------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR--IETLQTGT---SGKVQC-MALDDNEEF-LVIGTSDG 941 (949)
Q Consensus 877 ------~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~--~~~l~~~h---~~~I~~-l~~spdg~~-L~sgs~Dg 941 (949)
.....+.|+++|| .|++...+|.+..+|+.+... +..-..+. ...... +..-.+|+. +++.+..+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~ 256 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY 256 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence 1234678999988 566665599999999885433 21110021 112233 233346777 55555566
Q ss_pred cEEEE
Q 002234 942 RIQAW 946 (949)
Q Consensus 942 ~I~iW 946 (949)
.+.+.
T Consensus 257 ~~~l~ 261 (334)
T 2p9w_A 257 AISFR 261 (334)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65554
No 425
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.15 E-value=0.0018 Score=56.79 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=28.6
Q ss_pred CcccCcCccc-cccCcee--cCCCccccHHHHHHH
Q 002234 17 KDFVCPITTH-IFDDPVT--LETGQTYERRAIQEW 48 (949)
Q Consensus 17 ~~~~Cpic~~-~~~dPv~--~~cghtfc~~ci~~~ 48 (949)
+++.|+||.+ ++.+||. +.|||+||+.|++.+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4688999996 5899999 899999999999983
No 426
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.13 E-value=0.97 Score=48.00 Aligned_cols=215 Identities=8% Similarity=0.004 Sum_probs=103.4
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeC----C-------CcEEEEECCCCeeEEEE
Q 002234 680 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----D-------KTARVWSIGNEEIHCVQ 748 (949)
Q Consensus 680 ~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~----D-------g~I~vWd~~~~~~~~~~ 748 (949)
+++.|+ ..+.+||..++++.. ..+..............++..++.|+. + ..+.+||..+++...+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 568999999986654 333322223333333457788888874 1 12677888887543322
Q ss_pred eecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCE-EEEEEC--------CCcEEEEECCC
Q 002234 749 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQ--------DGAIQEIDLAT 819 (949)
Q Consensus 749 ~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~-l~sgs~--------Dg~I~iwd~~~ 819 (949)
.. ..+-... ++...+++ ++.|+. -..+.+||+.+
T Consensus 84 ~~--p~~r~~~-----------------------------------~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~ 126 (315)
T 4asc_A 84 PL--PSPRCLF-----------------------------------GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLS 126 (315)
T ss_dssp CB--SSCEESC-----------------------------------EEEEETTEEEEECCEESSTTCCBCCCEEEEETTT
T ss_pred CC--Ccchhce-----------------------------------eEEEECCEEEEEeCCcCCCCCcccceEEEECCCC
Confidence 11 1110000 01111222 223332 24688999988
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC----CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEE
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVY 892 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~ 892 (949)
++.......... ..-.+++...+..+++.+..++ ..+.+||..+.+-.. .++....-.+++...+ .++
T Consensus 127 ~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 201 (315)
T 4asc_A 127 FKWGESDPLPYV-----VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV 201 (315)
T ss_dssp TEEEECCCCSSC-----CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CcEeECCCCCCc-----ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEE
Confidence 765432211111 1112333455555555443122 368899988765332 2222222222333344 555
Q ss_pred EEECCC-----eEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 893 LGCKGG-----TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 893 sgs~dg-----~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
.|+.++ .+.+||..+.+-...-.......-.+++. -++++++.|+.+
T Consensus 202 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 202 AAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEE
T ss_pred EeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCcc
Confidence 665443 68899998765322211011111112222 367777888764
No 427
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.98 E-value=2.2 Score=46.27 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=41.2
Q ss_pred CCCcEEEEEEcC--------C-EEEEEECCCeEEEEECCCCcEEEE--eccccccceeEEEEeCCCCEEEEEe-CCCcE
Q 002234 877 TLSEVRAMVVSS--------E-LVYLGCKGGTVEIWDQKRQIRIET--LQTGTSGKVQCMALDDNEEFLVIGT-SDGRI 943 (949)
Q Consensus 877 ~~~~v~~l~~s~--------d-~l~sgs~dg~I~vwd~~~~~~~~~--l~~~h~~~I~~l~~spdg~~L~sgs-~Dg~I 943 (949)
++..+..+.|.. . ++++.-..+.|...+++.++.... +.......+..+++.|||.+.++.. .+|.|
T Consensus 269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 344567778753 2 444444667888888776554332 2222234799999999998666543 45644
No 428
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.83 E-value=0.88 Score=48.21 Aligned_cols=232 Identities=11% Similarity=0.065 Sum_probs=112.8
Q ss_pred cccccccccEEEEecCC----CCeEEEecCCceeeec----CCCCceEEEEEeCCEEEEEeC----C-----CcEEEEec
Q 002234 633 YSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDS----SENGKVLSIACFRDKIFSGHS----D-----GTIKVWTG 695 (949)
Q Consensus 633 ~~~~~~~~~~l~s~s~d----g~I~vWd~~~~~~~~~----~h~~~V~~l~~s~d~lasgs~----D-----g~I~vWd~ 695 (949)
..+...++..++.||.+ ..+.+||+.+...... .....-..+.+...+++.|+. + ..+.+||.
T Consensus 18 ~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 18 SHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp ---CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 44555567777777742 4677888764222111 111112223333335666655 2 46889999
Q ss_pred CCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEe
Q 002234 696 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 770 (949)
Q Consensus 696 ~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~D-----g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp 770 (949)
.++.+..+..+......-..+.+ ++++++.|+.+ ..+.+||..+++........ .+...
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~------------ 161 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TRRIG------------ 161 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SCCBS------------
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--ccccc------------
Confidence 98866655544322222222222 67777777644 35778888887543332111 11000
Q ss_pred CCCEEEEEEecCeEEEecCCCCceEEEEeCCE-EEEEEC-----CCcEEEEECCCCceeeeecccccccCCCCCEEEEEE
Q 002234 771 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 844 (949)
Q Consensus 771 ~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~-l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 844 (949)
.++...+++ ++.|+. -..+.+||+.+.+...... +..... -.++..
T Consensus 162 -----------------------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~-~~~~~~ 213 (308)
T 1zgk_A 162 -----------------------VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA----MNTIRS-GAGVCV 213 (308)
T ss_dssp -----------------------CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC----CSSCCB-SCEEEE
T ss_pred -----------------------eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC----CCCccc-cceEEE
Confidence 001111222 233333 2468899998877653321 111111 123333
Q ss_pred eCCceEEEEEECCC----CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEECC-----CeEEEEECCCCc
Q 002234 845 HNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 909 (949)
Q Consensus 845 ~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~d-----g~I~vwd~~~~~ 909 (949)
..+..+++. +.++ ..+.+||+.+.+-.. .++....-.+++...+ .++.|+.+ ..+.+||..+.+
T Consensus 214 ~~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 214 LHNCIYAAG-GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTEEEEEC-CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEe-CCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 445444444 3322 368999998765433 2222222223333344 55556543 468889987764
No 429
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.83 E-value=0.4 Score=50.06 Aligned_cols=217 Identities=11% Similarity=0.027 Sum_probs=126.4
Q ss_pred hhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHH-----hhC----hhhHHHHHHhcC
Q 002234 166 KPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALF-----KKG----LLEAVVLIDLLR 236 (949)
Q Consensus 166 ~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~ll-----k~g----~~~Aa~~l~~L~ 236 (949)
.+.++..++..|. +.+..+...++.+|.++.... ..++.++.+| +.. +..|+.+|..+.
T Consensus 52 ~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~-----------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 52 GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICK-----------KCEDNVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCT-----------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHc-CCCHHHHHHHHHHHHHhcccc-----------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3455676777664 468889999999999884321 2233344333 222 456667777764
Q ss_pred CChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHH
Q 002234 237 PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE 316 (949)
Q Consensus 237 ~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~ 316 (949)
..... ..-+.++.|+..+...+.. -..+++..|.. +....+++.|+..++..+...
T Consensus 120 ~~~~~-~~~~~~~~L~~~l~d~~~~-------vR~~a~~aL~~----------------~~~~~~~~~L~~~l~d~~~~v 175 (280)
T 1oyz_A 120 KKNPI-YSPKIVEQSQITAFDKSTN-------VRRATAFAISV----------------INDKATIPLLINLLKDPNGDV 175 (280)
T ss_dssp HHCGG-GHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHT----------------C---CCHHHHHHHHTCSSHHH
T ss_pred ccCCc-ccHHHHHHHHHHhhCCCHH-------HHHHHHHHHHh----------------cCCHHHHHHHHHHHcCCCHHH
Confidence 21100 0112346676666543211 01122222221 122458899999999999999
Q ss_pred HHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHH
Q 002234 317 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHT 396 (949)
Q Consensus 317 ~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~ 396 (949)
|..|+..|...-.. ....+++|+.++...+...|..|+..|..+- .-.....
T Consensus 176 r~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------------------~~~~~~~ 227 (280)
T 1oyz_A 176 RNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------------------DKRVLSV 227 (280)
T ss_dssp HHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------------------CGGGHHH
T ss_pred HHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------------------CHhhHHH
Confidence 99999988654110 1234567888887777777877777776652 1122344
Q ss_pred HHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002234 397 LLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 459 (949)
Q Consensus 397 l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l 459 (949)
|+..|+. ++-+..++..|..+ .+ +++++.|.+.|...+.+.....+..+|
T Consensus 228 L~~~l~d--~~vr~~a~~aL~~i---~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 228 LCDELKK--NTVYDDIIEAAGEL---GD--------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHTS--SSCCHHHHHHHHHH---CC--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHhcC--ccHHHHHHHHHHhc---Cc--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 5555554 33555677777766 22 357888898888766655444444443
No 430
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.82 E-value=0.84 Score=49.52 Aligned_cols=126 Identities=10% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCcEEEEECCCCceeeeecccccccC-CCCCEEEEEEeCCceEEEEEEC---C-------------CCEEEEEECCCCee
Q 002234 809 DGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSL---D-------------GAAVKMWSTSNYNM 871 (949)
Q Consensus 809 Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~---D-------------g~~I~iwd~~~~~~ 871 (949)
+.+|.+|++..+....... ..+.+ .-...+.+.+.+++.+.++... | .+.|.-+|. ++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~--~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHL--KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEE--EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCeEEEEEEECCCCEEEEE--eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 4667777665432211111 11221 2256899999999988777531 1 124444444 332
Q ss_pred EEeecCCCcEEEEEEcCC--EEEEE-ECCCeEEEEECCC-CcE--EEEeccccccceeEEEEeC-CCCEEEEEeCC
Q 002234 872 VGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKR-QIR--IETLQTGTSGKVQCMALDD-NEEFLVIGTSD 940 (949)
Q Consensus 872 ~~~~~~~~~v~~l~~s~d--~l~sg-s~dg~I~vwd~~~-~~~--~~~l~~~h~~~I~~l~~sp-dg~~L~sgs~D 940 (949)
......-...+.++|+|| .++.+ +..+.|..|++.. +.. ...+. ..+..-.+++.+ +|++.+++..+
T Consensus 214 ~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEEecCC
Confidence 222234456789999999 55555 4678999999863 332 22331 235678889998 59887766544
No 431
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.79 E-value=0.015 Score=69.97 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=135.4
Q ss_pred hhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHH-HHhhC----hhhHHHHHHhcCCCh-----HHH
Q 002234 173 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA-LFKKG----LLEAVVLIDLLRPST-----RTL 242 (949)
Q Consensus 173 l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~-llk~g----~~~Aa~~l~~L~~~~-----~~~ 242 (949)
+++.| .|.+...+..|..+|.+|.. +...++.+. ..+.+..++. +|.-- +.+|+.+|.+|.... ..+
T Consensus 39 ll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~-~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 39 VLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLL-REQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp HHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHH-HTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHH-HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 44443 46788889999999999964 666666666 5666666554 44322 678889999996332 345
Q ss_pred HHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHH
Q 002234 243 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 322 (949)
Q Consensus 243 ~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~ 322 (949)
..-+.+++|++.|++..+...... .+.. ......-..+.+ --.++..
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~-~~~~------------------------~~~~~~~~~~~~--------~~~~~l~ 162 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSE-PPFS------------------------KLLKAQQRLVWD--------ITGSLLV 162 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBT-TBGG------------------------GSCHHHHHHHHH--------HHHHHHH
T ss_pred HHcChHHHHHHHHHhhHHHHhhhc-cccc------------------------cccHHHHHHHHH--------HHHHHHH
Confidence 556677999999987532110000 0000 000000000001 1122344
Q ss_pred HHHHhhhccCCchhhHhhhcCchhhHHHHHhcCC---cchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHH
Q 002234 323 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASD---GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 399 (949)
Q Consensus 323 ~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~ 399 (949)
+|.++++.+......+.+.+.+++++.+|..... ..+..|+++|+.|..- +.++.+.|.+.+....|-.++.
T Consensus 163 lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d-----n~~~~~~i~~~~~~~~~~~ll~ 237 (684)
T 4gmo_A 163 LIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSED-----NLKVGQAITDDQETHVYDVLLK 237 (684)
T ss_dssp HHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHTCCSSCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc-----CHHHHHHHHhcchHHHHHHHHH
Confidence 5555556666666677788888999998766433 3455678888887655 5567888888887777766655
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHH
Q 002234 400 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEA 435 (949)
Q Consensus 400 ~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~ 435 (949)
+.+...-.+.++++.|.++-.-...-.++.|....
T Consensus 238 -~~~~~~~~~~la~giL~Ni~~~~~~~d~s~~~~~~ 272 (684)
T 4gmo_A 238 -LATGTDPRAVMACGVLHNVFTSLQWMDHSPGKDGA 272 (684)
T ss_dssp -HHHSSCTTHHHHHHHHHHHHHHHTCBTTBCCGGGC
T ss_pred -HhcCCcHHHHHHHHHHHhHhhhhhhhhcchhhHHH
Confidence 55666667888999998864333444556666554
No 432
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.78 E-value=1.6 Score=46.36 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=59.9
Q ss_pred cEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC----CEEEEEECCCCeeEE--eecCCCcEEEE
Q 002234 811 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAM 884 (949)
Q Consensus 811 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l 884 (949)
.+.+||+.+++............+| +++...+..|++.+..++ ..+.+||..+.+-.. .++....-.++
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r~~~-----~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKVYGH-----NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCEESC-----EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred eEEEEeCCCCCEeECCCCCCccccc-----EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 5788999887765432211112222 233345555555543221 258999998765332 22222222233
Q ss_pred EEcCC-EEEEEECC-----CeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCC
Q 002234 885 VVSSE-LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 940 (949)
Q Consensus 885 ~~s~d-~l~sgs~d-----g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~D 940 (949)
+...+ .++.|+.+ ..+.+||..+.+-...-.......-.+++ ..++++++.|+.+
T Consensus 203 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 203 AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFA 263 (318)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBC
T ss_pred EEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCee
Confidence 33344 55555432 36789998876532211001111111222 2357777777754
No 433
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.73 E-value=0.57 Score=49.69 Aligned_cols=132 Identities=13% Similarity=0.227 Sum_probs=65.2
Q ss_pred CcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCC----CEEEEEECCCCeeEE--eecCCCcEEE
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRA 883 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~ 883 (949)
..+.+||+.+++............+ .+++...+..|++ ++.++ ..+.+||+.+.+-.. .++....-.+
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 210 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIG-----VGVAVLNRLLYAV-GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAG 210 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-----CEEEEETTEEEEE-CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ccEEEECCCCCeEeECCCCCccccc-----eEEEEECCEEEEE-eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccce
Confidence 4688999988776533211111111 1233334444444 43332 368899988765332 2222211222
Q ss_pred EEEcCC-EEEEEECC-----CeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCC-----cEEEEeC
Q 002234 884 MVVSSE-LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG-----RIQAWGL 948 (949)
Q Consensus 884 l~~s~d-~l~sgs~d-----g~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg-----~I~iWdl 948 (949)
++...+ .++.|+.+ ..+.+||+.+.+-...-.......-.+++. -++++++.|+.++ .|.+||+
T Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 211 VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred EEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcC
Confidence 333344 55556543 569999998765322111011111112222 3677888887543 4677775
No 434
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.69 E-value=4.7 Score=47.34 Aligned_cols=294 Identities=12% Similarity=-0.003 Sum_probs=156.2
Q ss_pred EEEEecCCCCeEEEecCCc---eeeecCCCCceEEEEEeC--C-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEE
Q 002234 642 KVLSNGHDSSADFWNHREL---VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 715 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~~---~~~~~~h~~~V~~l~~s~--d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~ 715 (949)
.+++-...+.|..++.... ..+....-.....+++.+ + ++++-...+.|.+.+.++.. ....+...-.....
T Consensus 54 ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~ 131 (619)
T 3s94_A 54 IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQPRA 131 (619)
T ss_dssp EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCC
T ss_pred EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEeCCCCCCce
Confidence 4444455677888887632 223333336788899986 3 55666678899999998762 22222234455678
Q ss_pred EEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec-CeEEEecCC--
Q 002234 716 LAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNSS-- 790 (949)
Q Consensus 716 v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~-g~i~~~~~~-- 790 (949)
|++.|.+..|+-+.. .+.|...+++......+... .-.....+ ++.+++..+.+.... +.+..++..
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~-~~~~P~Gl-------ald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-EIYWPNGL-------TLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSSEEEE-------EEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-CCCCCcEE-------EEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 999997555554443 35666667665432222211 12233344 477766666555433 444444432
Q ss_pred ----------CCceEEEEeCCEEEEEE-CCCcEEEEECCCCceeeeecc-------------cccccCCC------CCEE
Q 002234 791 ----------KYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTG-------------HRKLLGKA------NPVH 840 (949)
Q Consensus 791 ----------~~v~~v~~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~-------------~~~~~~h~------~~V~ 840 (949)
.....+++.++.++.+. ..+.|...|..+++....... .....+.. +...
T Consensus 204 ~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs 283 (619)
T 3s94_A 204 NRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCS 283 (619)
T ss_dssp EEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCS
T ss_pred ccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCccc
Confidence 23455666666766654 467888999877754322110 00000000 0011
Q ss_pred EEEEe-C-----------------C--------ceEEEEEECCCCEEEEEECCCCee---EEeecCCCcEEEEEEcCC--
Q 002234 841 ALQVH-N-----------------G--------LVYTASTSLDGAAVKMWSTSNYNM---VGSLPTLSEVRAMVVSSE-- 889 (949)
Q Consensus 841 ~l~~~-~-----------------~--------~~~l~s~s~Dg~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~d-- 889 (949)
.+++. | + ..+++.+. . ..|+..++..... ...+..-..+..++|++.
T Consensus 284 ~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~-~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~ 361 (619)
T 3s94_A 284 HLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-R-TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361 (619)
T ss_dssp SEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-S-SCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTT
T ss_pred ceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-c-cceEEEecCCCccceeEEeccccCccEEEEEEcCCC
Confidence 11111 1 1 11222222 1 2466666654321 111223456788999873
Q ss_pred EEEEEE-CCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCC-EEEEEeCCCcEEEEeC
Q 002234 890 LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGL 948 (949)
Q Consensus 890 ~l~sgs-~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~-~L~sgs~Dg~I~iWdl 948 (949)
.++.+. ..+.|+.++.+.......+ .........+++.+.+. +.++-+..+.|.+.++
T Consensus 362 ~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 362 YIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 555554 5788999998765433333 22334678899987555 4445456677877765
No 435
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.42 E-value=2.3 Score=46.03 Aligned_cols=79 Identities=11% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCC-Cee--EEeecCCCcEEEEEEcC-C-EEEEEE-CC-CeEEEEECC--C
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNM--VGSLPTLSEVRAMVVSS-E-LVYLGC-KG-GTVEIWDQK--R 907 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~-d-~l~sgs-~d-g~I~vwd~~--~ 907 (949)
...+.++|+||+..+..+....+.|..|++.. +.. .+.+........+++.+ + .++++. .+ +.|..||.. .
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~ 300 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPP 300 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCC
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCC
Confidence 45789999999977666654446999999863 332 22333456678888887 4 455533 33 344444543 2
Q ss_pred CcEEEEec
Q 002234 908 QIRIETLQ 915 (949)
Q Consensus 908 ~~~~~~l~ 915 (949)
+..+..++
T Consensus 301 ~s~v~rI~ 308 (355)
T 3sre_A 301 GSEVLRIQ 308 (355)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEEE
Confidence 44444443
No 436
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.29 E-value=6.4 Score=46.30 Aligned_cols=170 Identities=11% Similarity=-0.024 Sum_probs=92.5
Q ss_pred ccEEEEecCCCCeEEEecCC--ceeeecCCCCceEEEEEeC--C-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEE
Q 002234 640 MVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 714 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~~s~--d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 714 (949)
+..+++-..++.|..++... ...+..........+++.+ + ++++-...+.|.+.++++.. ....+...-....
T Consensus 49 ~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~~~~l~~P~ 126 (628)
T 4a0p_A 49 NRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLVWKDLDSPR 126 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEECSSCCCEE
T ss_pred CEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEEeCCCCCcc
Confidence 33455666678888888763 2222322234566777764 3 55666677899999998762 2122223445578
Q ss_pred EEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEec-CeEEEec---
Q 002234 715 GLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLN--- 788 (949)
Q Consensus 715 ~v~fspdg~~L~Sgs~--Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~-g~i~~~~--- 788 (949)
.+++.|....|+-... .+.|...+++......+. ..-.....++ +.+++..+.+.... +.+..++
T Consensus 127 ~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--~~~~~P~Gla-------lD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--PNVGRANGLT-------IDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--CSCSSEEEEE-------EETTTTEEEEEETTTTEEEEEETTS
T ss_pred cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--CCCCCcceEE-------EccccCEEEEEECCCCEEEEEcCCC
Confidence 9999995445544442 467777777765433322 1222334444 55554444444322 2233222
Q ss_pred --------CCCCceEEEEeCCEEEEEEC-CCcEEEEECCCC
Q 002234 789 --------SSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATG 820 (949)
Q Consensus 789 --------~~~~v~~v~~~~~~l~sgs~-Dg~I~iwd~~~~ 820 (949)
.......+++..+.++.... .+.|...|..++
T Consensus 198 ~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 198 LNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 22334556666666655543 456666665444
No 437
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.29 E-value=0.064 Score=64.51 Aligned_cols=219 Identities=11% Similarity=0.016 Sum_probs=109.0
Q ss_pred CCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccce
Q 002234 687 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 765 (949)
Q Consensus 687 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sg-s~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~ 765 (949)
.+.|++.++.+. .....+. ....+..++|++.+..|+.+ ...+.|+.+++.+.... ......+..-...+..
T Consensus 385 ~~~I~~id~~~~--~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSC--CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCC
T ss_pred ccceEEEeCCCC--cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcce
Confidence 357888888876 3332232 33456789999866655554 44678888888751000 0000000000001111
Q ss_pred EEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEE-ECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE
Q 002234 766 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 844 (949)
Q Consensus 766 ~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 844 (949)
+++.+.+ +.|+.+ ...+.|.++++.......... ........+++
T Consensus 458 lavD~~~----------------------------g~LY~tD~~~~~I~v~d~dg~~~~~l~~------~~~~~P~giav 503 (699)
T 1n7d_A 458 LAVDWIH----------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFR------EQGSKPRAIVV 503 (699)
T ss_dssp EECCCSS----------------------------SBCEECCTTTSCEEEEBSSSCCEEEECC------CSSCCCCCEEC
T ss_pred EEEEeeC----------------------------CcEEEEeccCCeEEEEecCCCceEEEEe------CCCCCcceEEE
Confidence 2222222 223332 345678888876554332111 11234567888
Q ss_pred eCCceEEEEEEC-CCCEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEE-ECCCeEEEEECCCCcEEEEecc-cc
Q 002234 845 HNGLVYTASTSL-DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQT-GT 918 (949)
Q Consensus 845 ~~~~~~l~s~s~-Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sg-s~dg~I~vwd~~~~~~~~~l~~-~h 918 (949)
+|.+.++..+.. ....|..+++........+. .-...+.|+++++ .|+.+ +..+.|.++|+........+.. ..
T Consensus 504 Dp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 583 (699)
T 1n7d_A 504 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 583 (699)
T ss_dssp CSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS
T ss_pred ccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc
Confidence 874433332221 21367777664322211111 2345678999975 45444 4667899999875433222211 11
Q ss_pred ccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 919 SGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 919 ~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
......|++..+ .++++....+.|..++
T Consensus 584 ~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 584 LAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred CCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 223456666544 4455555667888776
No 438
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.27 E-value=2.5 Score=44.71 Aligned_cols=100 Identities=7% Similarity=-0.051 Sum_probs=51.6
Q ss_pred EEEEecCCCCeEEEecCCceeeecC---C-CCceEEEEEeCC-EEEEEeC----C-------CcEEEEecCCCceeeeEE
Q 002234 642 KVLSNGHDSSADFWNHRELVHVDSS---E-NGKVLSIACFRD-KIFSGHS----D-------GTIKVWTGRGSILHLIQQ 705 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~~~~~~~~---h-~~~V~~l~~s~d-~lasgs~----D-------g~I~vWd~~t~~~~~i~~ 705 (949)
.++.|+ ..+..||+.+....... + ...-.+++...+ .++.|+. + ..+.+||..++++..+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344565 45778888743322111 1 112223333333 6666663 1 127788999886655444
Q ss_pred ecccCCCEEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeeE
Q 002234 706 IREHTKAVTGLAILQSGEMLYSGSLD--------KTARVWSIGNEEIH 745 (949)
Q Consensus 706 l~~H~~~V~~v~fspdg~~L~Sgs~D--------g~I~vWd~~~~~~~ 745 (949)
+......-..+. -++..++.|+.+ ..+.+||..+++..
T Consensus 85 ~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~ 130 (315)
T 4asc_A 85 LPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130 (315)
T ss_dssp BSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEE
T ss_pred CCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEe
Confidence 332111111222 266677777642 45788888887543
No 439
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.23 E-value=7.6 Score=46.81 Aligned_cols=261 Identities=12% Similarity=0.115 Sum_probs=144.7
Q ss_pred ceEEEEEeCC--EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 002234 670 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 747 (949)
Q Consensus 670 ~V~~l~~s~d--~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~ 747 (949)
.|.++...++ .|..|+. +-+..+|..++.......+ ....|.++...++|.+.+ |+.+| +.+++..++.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~ 266 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHI 266 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCCEEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEE
Confidence 4888888753 5666664 4588889887743333322 234688888877777554 44544 78888877653332
Q ss_pred Eeec------CCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec-----------------CCCCceEEEEe-CCEE
Q 002234 748 QVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-----------------SSKYPKCLALV-QGKV 803 (949)
Q Consensus 748 ~~~~------~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~-----------------~~~~v~~v~~~-~~~l 803 (949)
.... ....|.++. ...+|. +-+++..| +.+.. ....|.++... ++.+
T Consensus 267 ~~~~~~~~~l~~~~i~~i~-------~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIF-------ADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEE-------ECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred EcCCCCcCcCCcCeEEEEE-------EcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 2111 112344443 222232 33444444 22211 12346666655 3678
Q ss_pred EEEECCCcEEEEECCCCcee--eeecc-cccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEEee--c--
Q 002234 804 YCGCQDGAIQEIDLATGTFA--TIQTG-HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL--P-- 876 (949)
Q Consensus 804 ~sgs~Dg~I~iwd~~~~~~~--~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~~~--~-- 876 (949)
..|+.+| +..++..++... ..+.. .....-....|.++.-.+++.+-++. ++ -+..||..+++..... .
T Consensus 338 WiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~-GL~~~~~~~~~~~~~~~~~~~ 413 (758)
T 3ott_A 338 WFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DG-SINRYDYATRQFIHYNIVDNT 413 (758)
T ss_dssp EEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TT-EEEEEETTTTEEEEEEEECCC
T ss_pred EEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CC-cHhhcCcCCCcEEEeecCCCc
Confidence 8888654 667776654211 11110 00000123468898888776554443 34 6999998877644321 1
Q ss_pred ---CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCC-----cEE---EEec--cc-cccceeEEEEeCCCCEEEEEeCCC
Q 002234 877 ---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQ-----IRI---ETLQ--TG-TSGKVQCMALDDNEEFLVIGTSDG 941 (949)
Q Consensus 877 ---~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~-----~~~---~~l~--~~-h~~~I~~l~~spdg~~L~sgs~Dg 941 (949)
....|.++...++ .+..|+..+-+.++|..+. ... ..+. .+ ....|.++...++|.+.+.++..+
T Consensus 414 ~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~ 493 (758)
T 3ott_A 414 GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK 493 (758)
T ss_dssp --CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCS
T ss_pred CCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCC
Confidence 1245888888766 7889998777889986531 111 1111 11 123588999888888766433344
Q ss_pred cEEEEeC
Q 002234 942 RIQAWGL 948 (949)
Q Consensus 942 ~I~iWdl 948 (949)
-|..+|.
T Consensus 494 Gl~~~d~ 500 (758)
T 3ott_A 494 GIDKINP 500 (758)
T ss_dssp SEEEEET
T ss_pred CcEEEeC
Confidence 4666653
No 440
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.16 E-value=3.2 Score=43.94 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=108.8
Q ss_pred ccEEEEecCCCCeEEEecCCceeee---cC-CCCceEEEEEeCC-EEEEEeC----CC-------cEEEEecCCCceeee
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVD---SS-ENGKVLSIACFRD-KIFSGHS----DG-------TIKVWTGRGSILHLI 703 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~---~~-h~~~V~~l~~s~d-~lasgs~----Dg-------~I~vWd~~t~~~~~i 703 (949)
...++.|+.+ +..||+.+..... .. ....-.+++...+ .++.|+. ++ .+.+||..++++..+
T Consensus 16 ~~i~~~GG~~--~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 16 DLILLVNDTA--AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEEECSSE--EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred chhhhccccc--eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3445556643 7788887432211 11 1112233333344 6666763 12 177889988866555
Q ss_pred EEecccCCCEEEEEEecCCCEEEEEeCC-------CcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEE
Q 002234 704 QQIREHTKAVTGLAILQSGEMLYSGSLD-------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 776 (949)
Q Consensus 704 ~~l~~H~~~V~~v~fspdg~~L~Sgs~D-------g~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~ 776 (949)
..+......-..+.+ +++.++.|+.+ ..+.+||..+++....... ..+..... +...+++.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~------~~~~~~~i-- 161 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKVYGHN------VISHNGMI-- 161 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCEESCE------EEEETTEE--
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCcccccE------EEEECCEE--
Confidence 443322222222222 67777777764 2477888888764433211 11110000 01112211
Q ss_pred EEEecCeEEEecCCCCceEEEEeCCEEEEEEC------CCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceE
Q 002234 777 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 850 (949)
Q Consensus 777 ~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 850 (949)
++.|+. -..+.+||+.+++.......... ..-.+++...+..+
T Consensus 162 --------------------------yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iy 210 (318)
T 2woz_A 162 --------------------------YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP-----RSMFGVAIHKGKIV 210 (318)
T ss_dssp --------------------------EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEE
T ss_pred --------------------------EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC-----cccceEEEECCEEE
Confidence 222322 24589999998876543211111 11123344556666
Q ss_pred EEEEECCC---CEEEEEECCCCeeEE--eecCCCcEEEEEEcCC-EEEEEECC--------------CeEEEEECCCCcE
Q 002234 851 TASTSLDG---AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG--------------GTVEIWDQKRQIR 910 (949)
Q Consensus 851 l~s~s~Dg---~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~d-~l~sgs~d--------------g~I~vwd~~~~~~ 910 (949)
++.|..+. ..+.+||+.+.+-.. .++....-.++....+ .++.|+.+ ..+.+||..+.+-
T Consensus 211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp EEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred EEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 65543322 257789987754332 2222222223333344 55555532 4688899887654
Q ss_pred E
Q 002234 911 I 911 (949)
Q Consensus 911 ~ 911 (949)
.
T Consensus 291 ~ 291 (318)
T 2woz_A 291 A 291 (318)
T ss_dssp E
T ss_pred h
Confidence 3
No 441
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.95 E-value=0.088 Score=52.09 Aligned_cols=127 Identities=19% Similarity=0.140 Sum_probs=91.6
Q ss_pred hcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhcccc
Q 002234 296 IVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRR 375 (949)
Q Consensus 296 i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~ 375 (949)
....+..+.+++.|+.++...|..|+..|...- ....++.|+.+|...+...|..|+..|..+-
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----- 73 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQIG----- 73 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-----
Confidence 345678899999999999999999999887541 1245678888888777777877777666541
Q ss_pred chhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHH
Q 002234 376 TFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAA 455 (949)
Q Consensus 376 ~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~ 455 (949)
.-.....|+..|+...++-+..++..|..+ . ..++++.|+..|.+. .+.++..|
T Consensus 74 --------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~--------~~~~~~~L~~~l~d~-~~~vr~~a 127 (201)
T 3ltj_A 74 --------------DERAVEPLIKALKDEDGWVRQSAAVALGQI---G--------DERAVEPLIKALKDE-DWFVRIAA 127 (201)
T ss_dssp --------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH---C--------CGGGHHHHHHHTTCS-SHHHHHHH
T ss_pred --------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---C--------cHHHHHHHHHHHcCC-CHHHHHHH
Confidence 112335566677666666666777777766 2 235788899988654 55788899
Q ss_pred HHHHHhcCc
Q 002234 456 AKTIVSLQG 464 (949)
Q Consensus 456 ~~~l~~l~~ 464 (949)
+++|..++.
T Consensus 128 ~~aL~~~~~ 136 (201)
T 3ltj_A 128 AFALGEIGD 136 (201)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCC
Confidence 999988753
No 442
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.95 E-value=5.6 Score=43.80 Aligned_cols=234 Identities=9% Similarity=0.063 Sum_probs=127.8
Q ss_pred ccEEEEecCCCCeEEEecCCceeeec-CCCCceEEEEEeC-CEEEEEeCCCcEEEEecCCCceeeeEEecccC----CCE
Q 002234 640 MVKVLSNGHDSSADFWNHRELVHVDS-SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQIREHT----KAV 713 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~~~~~~-~h~~~V~~l~~s~-d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~----~~V 713 (949)
...++--. ..++.|+|+++...... .....|.--.|-. +.|+-.+ +..|+-|++.+.. .+.+.+..|. ..|
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s-~P~kvFdR~~~L~~~QI 153 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGES-QPVKMFDRHSSLAGCQI 153 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSC-CCEEEEECCGGGTTCEE
T ss_pred CcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCeeEEecccCCC-CchhheecchhcccceE
Confidence 33444433 67899999985333221 1245677777754 5665554 4579999997642 5777777664 357
Q ss_pred EEEEEecCCCEEEEEeC-------CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEE
Q 002234 714 TGLAILQSGEMLYSGSL-------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 786 (949)
Q Consensus 714 ~~v~fspdg~~L~Sgs~-------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~ 786 (949)
..-..+++.++++..|- .|.+.+|..+.+..+.+..+ ...... +-.+|..
T Consensus 154 InY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh--aa~F~~---------~~~~g~~------------ 210 (494)
T 1bpo_A 154 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH--AASFAQ---------FKMEGNA------------ 210 (494)
T ss_dssp EEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS--EEEEEE---------EECTTCS------------
T ss_pred EEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee--eeeeEE---------EecCCCC------------
Confidence 77777888898775442 46778888887633322222 111111 1122210
Q ss_pred ecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC---cee---eeecccccccCCCCCEEEEEEeCCceEEEEEECCCCE
Q 002234 787 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG---TFA---TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 860 (949)
Q Consensus 787 ~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~---~~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~ 860 (949)
....+.|++... ...+.+++.++... ... .............+-..++..++....+..-+.-| .
T Consensus 211 --~~~~lf~fa~r~------~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G-~ 281 (494)
T 1bpo_A 211 --EESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG-Y 281 (494)
T ss_dssp --SEEEEEEEEECS------TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTS-E
T ss_pred --CCceEEEEEEec------CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCc-e
Confidence 000011111111 01367888887543 111 00010011122334566788887655555555565 9
Q ss_pred EEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC
Q 002234 861 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 861 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~ 908 (949)
|.+||+.++.++..-. ....|..-+.+.+ ++++....|.|.--.++..
T Consensus 282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 9999999999887665 4455544444333 5666666666655555443
No 443
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.33 E-value=5.5 Score=43.03 Aligned_cols=92 Identities=8% Similarity=0.075 Sum_probs=53.3
Q ss_pred ccccccEEEEecCCCCeEEEecCCcee------eecCCCCceEEEEEeCC-----EEEEEeC-C-----CcEEEEecCCC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRELVH------VDSSENGKVLSIACFRD-----KIFSGHS-D-----GTIKVWTGRGS 698 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~~~~------~~~~h~~~V~~l~~s~d-----~lasgs~-D-----g~I~vWd~~t~ 698 (949)
+.+++..+++ ..++.|.+++ ..... +..........++|+|+ .|+.+.. + +.|..|+...+
T Consensus 38 ~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 38 FLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp ECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred EcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC
Confidence 4456765444 5568898888 32111 11223467899999996 5554443 2 67888887754
Q ss_pred ce---ee-eEEec---ccCCCEEEEEEecCCCEEEEEe
Q 002234 699 IL---HL-IQQIR---EHTKAVTGLAILQSGEMLYSGS 729 (949)
Q Consensus 699 ~~---~~-i~~l~---~H~~~V~~v~fspdg~~L~Sgs 729 (949)
.. +. +..+. +.......++|.|||.+.++.+
T Consensus 116 ~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 116 RGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 21 12 22233 1111236899999998766654
No 444
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.032 Score=59.62 Aligned_cols=65 Identities=11% Similarity=0.214 Sum_probs=52.1
Q ss_pred CCcccCcCccccccCceec-CCCcc--ccHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 002234 16 PKDFVCPITTHIFDDPVTL-ETGQT--YERRAIQEWIE-RGNSSCPITRQKLSSTKLPKTNYVLKRLIAS 81 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~-~cght--fc~~ci~~~~~-~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~ 81 (949)
.-.+.|||++..|+.|+.- .|.|. |+...+..... .+.-.||+|++.+...++. .+..+.++++.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~-ID~~~~~IL~~ 315 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA-ISEFVDDILQN 315 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE-EBHHHHHHHTT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee-EcHHHHHHHHh
Confidence 3468999999999999975 99998 77776666433 4456899999999999995 88888877643
No 445
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.02 E-value=0.96 Score=51.32 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=91.2
Q ss_pred CceEEEEeC---CEEEEEEC-CCcEEEEECCCCceeeeecccccccCCCCCEEEEEE-------eCCceEEEEEECCC--
Q 002234 792 YPKCLALVQ---GKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV-------HNGLVYTASTSLDG-- 858 (949)
Q Consensus 792 ~v~~v~~~~---~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------~~~~~~l~s~s~Dg-- 858 (949)
....|+++| +.|+++.. .+.|++.|+.++......... .........++| ++++.++......+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~---~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN---TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT---TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC---ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 355677774 34666554 367899999888776433211 112345899999 99888655555443
Q ss_pred ----CEEEEEECCC-CeeE-----EeecCCCcEEEEEEcCC--EEE-EEECCCeEEEEECC-------CCcE--------
Q 002234 859 ----AAVKMWSTSN-YNMV-----GSLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWDQK-------RQIR-------- 910 (949)
Q Consensus 859 ----~~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~s~d--~l~-sgs~dg~I~vwd~~-------~~~~-------- 910 (949)
..|.+++... +... ..+........++++|+ .|+ +-..++.|+.+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 1366665433 1211 12221223456788884 445 45567889999987 5543
Q ss_pred ---EEE-eccccccceeEEEEeCCCCEEEEE-eCCCcEEEEe
Q 002234 911 ---IET-LQTGTSGKVQCMALDDNEEFLVIG-TSDGRIQAWG 947 (949)
Q Consensus 911 ---~~~-l~~~h~~~I~~l~~spdg~~L~sg-s~Dg~I~iWd 947 (949)
... +..+.......++|+|+|++|+.+ +..+.|+.++
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 112 222233456899999999965544 5567787755
No 446
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.94 E-value=0.6 Score=54.42 Aligned_cols=298 Identities=11% Similarity=0.039 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhcc--CCchhHHHHHHHHHHhhcc
Q 002234 121 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN--SVDPRVLEATIFLLSELGS 198 (949)
Q Consensus 121 ~~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~--s~~~~~~~~av~~L~~l~~ 198 (949)
...+..++..+.+.+. ..+..|+..+..++...... ...+.+++.|.. +.++.++..+...|.++..
T Consensus 9 ~~~i~~l~~~l~s~~~-~~R~~A~~~l~~i~~~~~~~----------~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 9 LYPIAVLIDELRNEDV-QLRLNSIKKLSTIALALGVE----------RTRSELLPFLTDTIYDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp SHHHHHHHHHTTCSCH-HHHHHHHHTHHHHHHHSCHH----------HHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSG
T ss_pred cCcHHHHHHHhhcccH-HHHHHHHHhHHHHHHHhCHH----------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 4556677777776543 33566666666665433211 112223333332 4466888888888887743
Q ss_pred cCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCC-ChHHHHHhhhhHHHHHHHHhccccchhcccCchhhH
Q 002234 199 RDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVS 273 (949)
Q Consensus 199 ~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~-~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~ 273 (949)
.-... .. ...-++.|..++... +..|..+|..+.. .+.+...-...|.+..+. .+... ....++
T Consensus 78 ~~~~~--~~--~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~-~~~~~------~~R~~a 146 (588)
T 1b3u_A 78 LVGGP--EY--VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLA-GGDWF------TSRTSA 146 (588)
T ss_dssp GGTSG--GG--GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHH-TCSSH------HHHHHH
T ss_pred ccCcH--HH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh-cCCCc------HHHHHH
Confidence 21100 00 111223444444333 4566677777643 222211111123333332 22211 122334
Q ss_pred HHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHh
Q 002234 274 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 353 (949)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~ 353 (949)
..++..+..... .......++.+...++..+.+.|..|+..|....+.-+.- .....-++.+..++..
T Consensus 147 ~~~l~~~~~~~~---------~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d 214 (588)
T 1b3u_A 147 CGLFSVCYPRVS---------SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASD 214 (588)
T ss_dssp GGGHHHHTTTSC---------HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcC
Confidence 445554432221 1123345688888888899999999999998776554321 1112234556666777
Q ss_pred cCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHH
Q 002234 354 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYRE 433 (949)
Q Consensus 354 ~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~ 433 (949)
.+...|..|+..|..+...-... .... ..++.+..+++.....-+-.++..|..+.....+ ..+.+
T Consensus 215 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~--------~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~ 280 (588)
T 1b3u_A 215 EQDSVRLLAVEACVNIAQLLPQE---DLEA--------LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKT 280 (588)
T ss_dssp SCHHHHTTHHHHHHHHHHHSCHH---HHHH--------HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCCHH---HHHH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchh
Confidence 77777888888887775531110 0000 1223333344333333344566666665322111 12456
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccc
Q 002234 434 EAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFT 467 (949)
Q Consensus 434 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 467 (949)
+.++.++..+.. +.+.++..|+.+|..++..+.
T Consensus 281 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 281 DLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp THHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhC
Confidence 678888888864 345678888899888766543
No 447
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.91 E-value=0.2 Score=60.05 Aligned_cols=209 Identities=12% Similarity=0.076 Sum_probs=124.8
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhccc-C
Q 002234 122 TELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR-D 200 (949)
Q Consensus 122 ~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~-~ 200 (949)
+.+-..+++|.+++ ..+++.|...|..+.. +......+.+.+++..++.-+....+.+|+++|..+|.+|... .
T Consensus 34 ~~i~Pll~~L~S~~-~~~r~~A~~al~~l~~----~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSPD-AKSRTTAAGAIANIVQ----DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSSC-CSHHHHHHHHHHHHTT----SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCCC-HHHHHHHHHHHHHHHc----CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 34455677776554 4567888888888773 2333333667777766776666667899999999999999655 3
Q ss_pred ccceeeccccCCcHHHHHHHHhhChhhHHHHHHhcCCCh-----HHHHHh-hhhHHHHH---HHHhccccchhcccCchh
Q 002234 201 KSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPST-----RTLIEM-DMMESLMT---VIKKKEEDFLKMCLKPKS 271 (949)
Q Consensus 201 ~~~~~~i~~~~~~i~~l~~llk~g~~~Aa~~l~~L~~~~-----~~~~~~-~~~~~lv~---~l~~~~~~~~~~~~~~~~ 271 (949)
..++..+. .++.+++|..+|++.. ..+..+.+.. .....+ +..+.++. .|.++
T Consensus 109 ~d~~~~l~-~~~il~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~------------- 170 (684)
T 4gmo_A 109 ADFCVHLY-RLDVLTAIEHAAKAVL----ETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA------------- 170 (684)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHH----HHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred chHHHHHH-HcChHHHHHHHHHhhH----HHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 45666666 5677888888887531 1122222111 111111 11111221 12222
Q ss_pred hHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhccc---HHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhH
Q 002234 272 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW---AEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 348 (949)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~---~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~ 348 (949)
+.....+++..++++.|+..|.+.+ .+.+..|+.+|..+.+.+......+.+.+....+.
T Consensus 171 -----------------s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~ 233 (684)
T 4gmo_A 171 -----------------RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYD 233 (684)
T ss_dssp -----------------CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHH
T ss_pred -----------------CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHH
Confidence 2233445667799999999986443 46678888888888777776666676665544333
Q ss_pred HH--HHhcCCcchhHHHHHHHHhh
Q 002234 349 ES--FMAASDGERFEIVCFLSELV 370 (949)
Q Consensus 349 ~l--l~~~~~~~~~~~~~~l~~l~ 370 (949)
-+ +...++..|..+...|.++.
T Consensus 234 ~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 234 VLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHhHh
Confidence 33 23355555655555565553
No 448
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.73 E-value=15 Score=44.02 Aligned_cols=284 Identities=13% Similarity=0.113 Sum_probs=151.0
Q ss_pred EEEEecCCCCeEEEecCC-ceeee-----cCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEeccc----C
Q 002234 642 KVLSNGHDSSADFWNHRE-LVHVD-----SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREH----T 710 (949)
Q Consensus 642 ~l~s~s~dg~I~vWd~~~-~~~~~-----~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H----~ 710 (949)
.+..+..+ -+..+|..+ ....+ ......|.++...++ .|..|+.+| +..+|..++...... .... .
T Consensus 114 ~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~-~~~~~~~~~ 190 (758)
T 3ott_A 114 TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIP-LPVHSSQSN 190 (758)
T ss_dssp EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEEC-CCCCTTCSS
T ss_pred cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEec-CCCcccccc
Confidence 44455555 355677653 22222 112456888888754 666677654 777888776322111 1111 2
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecC-
Q 002234 711 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS- 789 (949)
Q Consensus 711 ~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~- 789 (949)
..|.++...+++..|..|+. +-+..+|..+++........ ...|.++. ...+|. +.++..+ -+..++.
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~-------~d~~g~-lWigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLA-------LDGNGD-LLAGTDN-GLYVYHND 259 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEE-------ECTTCC-EEEEETT-EEEEECCT
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEE-------EcCCCC-EEEEeCC-ceeEEecC
Confidence 34888888877776555664 34888998887543332211 22344443 222333 2223322 2222221
Q ss_pred ------------------CCCceEEEEeC-CEEEEEECCCcEEEEECCCCceeeeecccc-cccCCCCCEEEEEEeCCce
Q 002234 790 ------------------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR-KLLGKANPVHALQVHNGLV 849 (949)
Q Consensus 790 ------------------~~~v~~v~~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~ 849 (949)
...|.++..+. +.+..|+..| +.++... .... .+.... .-......|.++....++.
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~~~~-~~~~~~~~~~~~~~~v~~i~~D~~g~ 336 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYN-SALQ-FIPISQITGTGDGNQFYSLFRDSKGF 336 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCC-C-CE-EEEHHHHSCSCCCCBEEEEEECTTCC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccC-Ccee-EEecccCCCCCCCceEEEEEEcCCCC
Confidence 12366666653 6788888877 5554332 2111 111000 0011234688888877666
Q ss_pred EEEEEECCCCEEEEEECCCCe--eEEeec--------CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCcEEEEec-cc
Q 002234 850 YTASTSLDGAAVKMWSTSNYN--MVGSLP--------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ-TG 917 (949)
Q Consensus 850 ~l~s~s~Dg~~I~iwd~~~~~--~~~~~~--------~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~~~~~l~-~~ 917 (949)
+-+.+ .+ -+..++..++. ....+. ....|.++....+ .+..|+ ++-+..||..+++...-.. ..
T Consensus 337 lWiGt-~~--Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~ 412 (758)
T 3ott_A 337 YWFGG-AN--GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDN 412 (758)
T ss_dssp EEEEE-TT--EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECC
T ss_pred EEEee-CC--cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCC
Confidence 55544 33 46667665432 111121 1245888887766 688888 4579999998875432211 11
Q ss_pred ----cccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 918 ----TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 918 ----h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
....|.++...++|. |..|+..+-|.++|
T Consensus 413 ~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 413 TGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp C--CBSSSEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred cCCCCCceEEEEEEcCCCC-EEEEECCCceEEEc
Confidence 123588888777765 55566655566665
No 449
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.66 E-value=3.6 Score=49.13 Aligned_cols=196 Identities=10% Similarity=0.117 Sum_probs=97.8
Q ss_pred CEEEEEeCC----CcEEEEecCCCceeeeE-Ee-----cccCCCEEEEEEec-CCCEEEEEeCCC------cEEEEECCC
Q 002234 679 DKIFSGHSD----GTIKVWTGRGSILHLIQ-QI-----REHTKAVTGLAILQ-SGEMLYSGSLDK------TARVWSIGN 741 (949)
Q Consensus 679 d~lasgs~D----g~I~vWd~~t~~~~~i~-~l-----~~H~~~V~~v~fsp-dg~~L~Sgs~Dg------~I~vWd~~~ 741 (949)
..++.|+.+ ..+.+||..++.+..+. .+ ...... .+++..+ +++.++.||.++ .+.+||..+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 366666643 46889999988766655 31 111111 2233333 777788887543 477888888
Q ss_pred CeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCC--cEEEEECCC
Q 002234 742 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLAT 819 (949)
Q Consensus 742 ~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg--~I~iwd~~~ 819 (949)
++........ .+.... ..+...+++. ++.|+.++ .+.+||+.+
T Consensus 478 ~~W~~~~~~p--~~R~~h-----~~~~~~~~~i----------------------------yv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 478 REWSMIKSLS--HTRFRH-----SACSLPDGNV----------------------------LILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TEEEECCCCS--BCCBSC-----EEEECTTSCE----------------------------EEECCBCSSCSEEEEETTT
T ss_pred CcEEECCCCC--CCcccc-----eEEEEcCCEE----------------------------EEECCCCCCCCEEEEECCC
Confidence 7543332111 110000 0001112222 34444333 789999998
Q ss_pred CceeeeecccccccCCCCCEEEEEEeCC-ceEEEEEEC--CC----CEEEEEECCCCe--------eEEeec--CCCcEE
Q 002234 820 GTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSL--DG----AAVKMWSTSNYN--------MVGSLP--TLSEVR 882 (949)
Q Consensus 820 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~--Dg----~~I~iwd~~~~~--------~~~~~~--~~~~v~ 882 (949)
+........ ............+.+..+ +...+.|+. ++ ..+.+||+.+.. .+...+ ......
T Consensus 523 ~~W~~~~~~-g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~ 601 (695)
T 2zwa_A 523 EIFKDVTPK-DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ 601 (695)
T ss_dssp TEEEECCCS-SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE
T ss_pred CceEEccCC-CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce
Confidence 876543210 001111111223444543 444444443 21 368899988765 122211 122233
Q ss_pred EEEEcCC-EEEEEEC--------CCeEEEEECCCCcEE
Q 002234 883 AMVVSSE-LVYLGCK--------GGTVEIWDQKRQIRI 911 (949)
Q Consensus 883 ~l~~s~d-~l~sgs~--------dg~I~vwd~~~~~~~ 911 (949)
.+.+..+ .++.|+. .+.|.+||..+.+-.
T Consensus 602 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 602 IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 4445524 5555653 356999999887643
No 450
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.47 E-value=3.4 Score=52.31 Aligned_cols=257 Identities=12% Similarity=0.057 Sum_probs=126.0
Q ss_pred CCCeEEEecCCceeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEE
Q 002234 649 DSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 727 (949)
Q Consensus 649 dg~I~vWd~~~~~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~S 727 (949)
..+|.|-|+.....+.+..- .--+.-.+|. .+++--...++.|+|+++. ..+..+.- ...|.--.|-.+ +.|+-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-~AdsAIMnP~~~iiALrag~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~-~~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKAGKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVAL 121 (1630)
T ss_pred CceEEEEECCCCCCcccccc-cchhhccCCCcceEEEecCCeEEEeehHHh--hhhccccc-CCCceEEEecCC-CeeEE
Confidence 34677777764322211110 0112223443 2222223689999999988 55555542 345666667544 34444
Q ss_pred EeCCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEE
Q 002234 728 GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 807 (949)
Q Consensus 728 gs~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs 807 (949)
.+. ..|..|++.+.. .....++......+.. --....+++.++++..+-. -.+ |.
T Consensus 122 VT~-~aVyHW~~~~~s-~P~k~fdR~~~L~~~Q--IinY~~d~~~kW~~l~gi~----------------~~~-----~~ 176 (1630)
T 1xi4_A 122 VTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQ--IINYRTDAKQKWLLLTGIS----------------AQQ-----NR 176 (1630)
T ss_pred EcC-CeEEEeccCCCC-ccHHHHhcchhcccCe--eEEeeeCCCCCeEEEEeec----------------cCC-----Cc
Confidence 443 469999996532 2222221111111100 0011144555554332210 001 23
Q ss_pred CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEe--CC-ceEE--EEEECCCCEEEEEECCCC---eeEE------
Q 002234 808 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH--NG-LVYT--ASTSLDGAAVKMWSTSNY---NMVG------ 873 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~-~~~l--~s~s~Dg~~I~iwd~~~~---~~~~------ 873 (949)
-.|.+++|....+.. ..+.||......+... +. ...+ +.-+..|+.+.|-++... .+..
T Consensus 177 v~G~mQLyS~er~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred ccceeeeeecccccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 458889998876654 3445555444333332 11 1111 111223458889888543 1110
Q ss_pred -eec---CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcE
Q 002234 874 -SLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 943 (949)
Q Consensus 874 -~~~---~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 943 (949)
.++ ...-..++.+|+. .++.-+.-|.|++||+.|+.++..-+ -...+|...+-++...-++.....|.|
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceE
Confidence 111 1334567777877 68888999999999999998776543 222334333333332233333444544
No 451
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.46 E-value=8.8 Score=41.15 Aligned_cols=91 Identities=5% Similarity=0.000 Sum_probs=47.4
Q ss_pred cccEEEEecCC-CCeEEEecCC--ce-eee---c-CCCCceEEEEEeCCEEEEEeC-C---------CcEEEEecCCCce
Q 002234 639 EMVKVLSNGHD-SSADFWNHRE--LV-HVD---S-SENGKVLSIACFRDKIFSGHS-D---------GTIKVWTGRGSIL 700 (949)
Q Consensus 639 ~~~~l~s~s~d-g~I~vWd~~~--~~-~~~---~-~h~~~V~~l~~s~d~lasgs~-D---------g~I~vWd~~t~~~ 700 (949)
++..++.||.+ ..+.++|+.+ .. ... . .....-.++.+...+++.|+. + ..+.+||..++++
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 55555666644 5677778752 11 111 1 111222233333335555655 2 4689999999876
Q ss_pred eeeEEec-ccCCCEEEEEEecCCCEEEEEeCC
Q 002234 701 HLIQQIR-EHTKAVTGLAILQSGEMLYSGSLD 731 (949)
Q Consensus 701 ~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~D 731 (949)
..+..+. .....-.++. .++++++.|+.+
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 6655443 1111222222 577888888865
No 452
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.24 E-value=1 Score=48.34 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeEEeccc-CCCEEEEEEe--cCCCEEEEE--eCCCcEEEEECCCCeeEEEEeecCC
Q 002234 679 DKIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAIL--QSGEMLYSG--SLDKTARVWSIGNEEIHCVQVHDIK 753 (949)
Q Consensus 679 d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H-~~~V~~v~fs--pdg~~L~Sg--s~Dg~I~vWd~~~~~~~~~~~~~~~ 753 (949)
+.++.++.||.|.-.|..+| +...+++.. ..++....-. +.+..++.+ +.||.+..++..+|..+ .. ....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~-~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LP-LSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EE-EEHH
T ss_pred CEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-ee-eccc
Confidence 37899999999999999999 777777643 1222221100 112234444 58999999999887422 11 1111
Q ss_pred CceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeec
Q 002234 754 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 827 (949)
Q Consensus 754 ~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 827 (949)
..+.. +| +.-++.-++ .+.. -...++.+++|+.+|.+...|+.+|+.+..+.
T Consensus 87 ~lv~~---SP----~~~~~~pvv----------~~~~-----~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVST---SP----LHLKTNIVV----------NDSG-----KIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTT---CS----EEEECC-------------------------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceec---cc----cccCCCcee----------eccc-----ccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 11100 00 000111000 0000 00023468999999999999999999987664
No 453
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.06 E-value=10 Score=40.06 Aligned_cols=236 Identities=9% Similarity=0.050 Sum_probs=128.2
Q ss_pred ccccEEEEecCCCCeEEEecCCceeeec-CCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEecccC----C
Q 002234 638 FEMVKVLSNGHDSSADFWNHRELVHVDS-SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT----K 711 (949)
Q Consensus 638 ~~~~~l~s~s~dg~I~vWd~~~~~~~~~-~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~----~ 711 (949)
+....++--. ..++.++|+++..+... .-...|.--.|-.+ .|+-.+. ..|+-|++.+.. .+.+.+..|. .
T Consensus 76 P~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s-~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 76 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD-NAVYHWSMEGES-QPVKMFDRHSSLAGC 152 (365)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEES-SEEEEEESSTTC-CCEEEEECCGGGTTC
T ss_pred CCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcC-CcEEEEcccCCC-CCceeeecchhcccc
Confidence 3344444443 67899999985433221 22467888888664 5555543 579999998632 5777776664 3
Q ss_pred CEEEEEEecCCCEEEEEeC-------CCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeE
Q 002234 712 AVTGLAILQSGEMLYSGSL-------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 784 (949)
Q Consensus 712 ~V~~v~fspdg~~L~Sgs~-------Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i 784 (949)
.|..-..+++.++++..|- .|.+.+|..+.+..+.+..+ ...... +-.+|..
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh--aa~F~~---------~~~~g~~---------- 211 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH--AASFAQ---------FKMEGNA---------- 211 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS--EEEEEE---------ECCTTCS----------
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeee--eeeeEE---------EecCCCC----------
Confidence 5777777888888765543 36778888887632222222 111111 1112210
Q ss_pred EEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC---ceee---eecccccccCCCCCEEEEEEeCCceEEEEEECCC
Q 002234 785 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG---TFAT---IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 858 (949)
Q Consensus 785 ~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~---~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg 858 (949)
....+.|++.. +...+.+++.++... .... ............+-..++..++....+..-+.-|
T Consensus 212 ----~~~~lf~fa~r------~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G 281 (365)
T 2xzh_A 212 ----EESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 281 (365)
T ss_dssp ----SCEEEEEEEEE------ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTS
T ss_pred ----CCceEEEEEEe------cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCc
Confidence 00001111111 111247788887433 1110 0000011112344566778876555555555555
Q ss_pred CEEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCC
Q 002234 859 AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 908 (949)
Q Consensus 859 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~ 908 (949)
.|.+||+.++.++..-+ ....|..-+.+.+ ++++-...|.|.--.++..
T Consensus 282 -~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 282 -YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -EEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred -EEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 99999999999987665 4445544444322 5666666666655555443
No 454
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.97 E-value=0.07 Score=56.86 Aligned_cols=65 Identities=12% Similarity=0.275 Sum_probs=52.8
Q ss_pred CCcccCcCccccccCceec-CCCcc--ccHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 002234 16 PKDFVCPITTHIFDDPVTL-ETGQT--YERRAIQEWIE-RGNSSCPITRQKLSSTKLPKTNYVLKRLIAS 81 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~-~cght--fc~~ci~~~~~-~~~~~CP~c~~~~~~~~~~~~n~~l~~~i~~ 81 (949)
.-.+.|||+...|+.|+.- .|.|. |+...+..... .+.-.||+|++.+...++. .+..+.+.+..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~-ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI-LDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE-EBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE-EcHHHHHHHHh
Confidence 4467999999999999975 99998 87777776444 3456899999999999995 88888887653
No 455
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.72 E-value=1.9 Score=52.97 Aligned_cols=310 Identities=11% Similarity=0.065 Sum_probs=151.6
Q ss_pred hhhHHHHHHHHHHHHHhcCChhHHHhh--chhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHH
Q 002234 138 NESEMAVLQIERCWLEASMELDIQIML--SKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 215 (949)
Q Consensus 138 ~~~~~a~~~i~~~~~~~~~~~~~~~~l--~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~ 215 (949)
..++.++..+..+.+.......- ..+ .-+.++..++..+. +.+..++.+|+.+|.++......... ...+..++
T Consensus 143 ~~r~~al~~L~~i~~~~~~~~~~-~~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~--~~~~~~l~ 218 (852)
T 4fdd_A 143 NTCEGAFGALQKICEDSAEILDS-DVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALM--LHIDSFIE 218 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHH-CSSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHH--TSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhch-hhhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHH
Confidence 33566666677776655432100 000 01223344444333 56788999999999887543221110 00123345
Q ss_pred HHHHHHhhC----hhhHHHHHHhcCC-ChHHHH-Hhh-hhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccc
Q 002234 216 RIVALFKKG----LLEAVVLIDLLRP-STRTLI-EMD-MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 288 (949)
Q Consensus 216 ~l~~llk~g----~~~Aa~~l~~L~~-~~~~~~-~~~-~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 288 (949)
.|..++..+ +..|...|..|.. .++.+. .++ .++.++.++.... +.+ ...|+-++..+.... .
T Consensus 219 ~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~-~~v------r~~a~e~l~~l~~~~---~ 288 (852)
T 4fdd_A 219 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD-ENV------ALEACEFWLTLAEQP---I 288 (852)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS-HHH------HHHHHHHHHHHTTST---T
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc-HHH------HHHHHHHHHHHhcch---h
Confidence 555655554 3455566666632 222111 122 2255555544321 110 111222232221110 0
Q ss_pred cccchhhhcchhhHHHHHHhhh----------cc------------cHHHHHHHHHHHHHhhhccCCchhhHhhhcCchh
Q 002234 289 VSSIANTIVSSKVFESVISSLE----------AE------------WAEERIAAVGILLRCMQEDGKCRNSIADKAELAP 346 (949)
Q Consensus 289 ~~~~~~~i~~~g~i~~l~~~l~----------~~------------~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~ 346 (949)
. .+...-.-...+|.|+..+. .+ ....|..|+.+|..+....+. .+.. .-++.
T Consensus 289 ~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~ 363 (852)
T 4fdd_A 289 C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL 363 (852)
T ss_dssp H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence 0 00001111234566766662 11 112366777777666544331 1111 12344
Q ss_pred hHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCC
Q 002234 347 VMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPR 426 (949)
Q Consensus 347 l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~ 426 (949)
+.+++.+.+.+.|..|+..|..+..-.... ++. ---..+..++..|+...+.=+-.++..+.++.-...+.
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~--------~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQG--------MIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHH--------HGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHH--------HHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 445666677788888888888876542111 110 00112344555554444444445667777764432222
Q ss_pred CCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccccCChhhHHH
Q 002234 427 KMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRA 476 (949)
Q Consensus 427 ~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~ 476 (949)
....|-++.++.|+..|... .+.+|..|+.||.++.......=.||...
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ 483 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLAY 483 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHHHH
Confidence 34567889999999999765 46789999999999864433222344433
No 456
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.42 E-value=3.7 Score=44.24 Aligned_cols=64 Identities=6% Similarity=0.002 Sum_probs=35.6
Q ss_pred EEEEEeC-CCcEEEEecCC--CceeeeEEec-ccCCCEEEEEEecCCCEEEEEeC-C---------CcEEEEECCCCeeE
Q 002234 680 KIFSGHS-DGTIKVWTGRG--SILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSL-D---------KTARVWSIGNEEIH 745 (949)
Q Consensus 680 ~lasgs~-Dg~I~vWd~~t--~~~~~i~~l~-~H~~~V~~v~fspdg~~L~Sgs~-D---------g~I~vWd~~~~~~~ 745 (949)
+++.|+. ...+.++|..+ .++..+..+. .....-..+. -++++++.|+. + ..+.+||..+++..
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 4455543 45788889874 5555554443 1111112222 25677777765 2 35788888887543
No 457
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.15 E-value=2.2 Score=49.47 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCCh-HHHH
Q 002234 169 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST-RTLI 243 (949)
Q Consensus 169 ~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~-~~~~ 243 (949)
++..++.++. ..+..+.+.+...|..+...-......-.-.+.-++.+..+++.. +..|+.+|..+...- .+..
T Consensus 282 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 282 LVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 3444444443 457788898988888875432100000000112235565666554 334444555543211 1111
Q ss_pred HhhhhHHHHHHHHhc
Q 002234 244 EMDMMESLMTVIKKK 258 (949)
Q Consensus 244 ~~~~~~~lv~~l~~~ 258 (949)
.-...|.++..++..
T Consensus 361 ~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhCCC
Confidence 112347777777643
No 458
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.12 E-value=6.5 Score=43.21 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=87.5
Q ss_pred CCCcEEEEECCCCceeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCe------------eEEee
Q 002234 808 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN------------MVGSL 875 (949)
Q Consensus 808 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~------------~~~~~ 875 (949)
.++.||.-++..+...+.+..... -....|..+..+|+|.+++..+.. .|.|-.+..+. ..+.+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~--i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRH--LVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTT--CCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred ECCEEEEEECCCCCcceEEecCcc--cccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccccccccceeEE
Confidence 346777777774433222211100 012356789999999999998754 79998887321 11223
Q ss_pred c-------CCCcEEEEEEcCC-----EEEEEECCCeEEEEECCCCc--EEEEecc--------ccccceeEEEEeCCCCE
Q 002234 876 P-------TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI--RIETLQT--------GTSGKVQCMALDDNEEF 933 (949)
Q Consensus 876 ~-------~~~~v~~l~~s~d-----~l~sgs~dg~I~vwd~~~~~--~~~~l~~--------~h~~~I~~l~~spdg~~ 933 (949)
. ...+|..+.|+|- .+++-..|++|++||+.... +. .+.. .....|.+++|.+++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 2 2467999999986 79999999999999998522 22 3321 12247899999998877
Q ss_pred EEEEe--CCCcEEE
Q 002234 934 LVIGT--SDGRIQA 945 (949)
Q Consensus 934 L~sgs--~Dg~I~i 945 (949)
|+..+ .+|-|+-
T Consensus 194 LYvl~~t~~GDIYA 207 (452)
T 3pbp_A 194 LYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEECTTSCEEEE
T ss_pred EEEEecCCCCCEEE
Confidence 77755 7787753
No 459
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.33 Score=52.29 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=72.0
Q ss_pred CEEEEEECCCcEEEEECCCCceeeeecccccccCCCCCEEEEEE---eCCceEEEEE-ECCCCEEEEEECCCCeeEEeec
Q 002234 801 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV---HNGLVYTAST-SLDGAAVKMWSTSNYNMVGSLP 876 (949)
Q Consensus 801 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~---~~~~~~l~s~-s~Dg~~I~iwd~~~~~~~~~~~ 876 (949)
+.+++++.||.|+-+|..+|+....+... ...++....- ..++..++.. +.|| .|..+|..+|.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-----~~~p~~~~~~~~~~~~~~~~vv~p~~dG-~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-----NFQPLIEIQEPSRLETYETLIIEPFGDG-NIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-----GSCCSEECCCSCTTTSSEEEEECCSTTT-EEEEEETTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-----ccCCcEEecCCccccCCcEEEEEECCCC-EEEEEECCCCcEEeeec
Confidence 46899999999999999999988765432 1111111110 0122333333 4565 89999988886554443
Q ss_pred -----CCCcEEE---EEE-------cCCEEEEEECCCeEEEEECCCCcEEEEeccc
Q 002234 877 -----TLSEVRA---MVV-------SSELVYLGCKGGTVEIWDQKRQIRIETLQTG 917 (949)
Q Consensus 877 -----~~~~v~~---l~~-------s~d~l~sgs~dg~I~vwd~~~~~~~~~l~~~ 917 (949)
..+++.. ..+ ..+.+++|+.+|.+...|..+|+.+..+..+
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2233331 011 3448899999999999999999999999644
No 460
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.94 E-value=0.3 Score=39.92 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=38.5
Q ss_pred CcccCcCcccccc-----Cceec--CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFD-----DPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~-----dPv~~--~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
..-.|.||++-.- +|.+. .|+...||.|.+-=..+++..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3457999998532 35555 899999999999877888999999988776
No 461
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.81 E-value=0.078 Score=48.55 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 002234 433 EEAIDTLISCLRNSDYPAAQLAAAKTIVS 461 (949)
Q Consensus 433 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 461 (949)
+++++.|+..|++. .+.++..|+.+|..
T Consensus 103 ~~a~~~L~~~l~d~-~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAETG-TGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 56788888888643 45677778887754
No 462
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.35 E-value=22 Score=38.16 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=47.8
Q ss_pred cCCCCceEEEEEeCC-EEEEEeC-CCcEEEEecCCCceeeeEEe----cccCCCEEEEEEecC---CCEEEEE-e--CCC
Q 002234 665 SSENGKVLSIACFRD-KIFSGHS-DGTIKVWTGRGSILHLIQQI----REHTKAVTGLAILQS---GEMLYSG-S--LDK 732 (949)
Q Consensus 665 ~~h~~~V~~l~~s~d-~lasgs~-Dg~I~vWd~~t~~~~~i~~l----~~H~~~V~~v~fspd---g~~L~Sg-s--~Dg 732 (949)
...-...+.|+|.|| .++.+.. .|.|++++..++....+..+ .........|+|+|+ +..|+.. + .++
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 334556789999997 4555555 89999998776643333333 233567899999995 3344332 2 344
Q ss_pred cEEEEECCC
Q 002234 733 TARVWSIGN 741 (949)
Q Consensus 733 ~I~vWd~~~ 741 (949)
.|.-|....
T Consensus 108 ~v~R~~~~~ 116 (347)
T 3das_A 108 RIVRMLYDE 116 (347)
T ss_dssp EEEEEEBCT
T ss_pred EEEEEEeCC
Confidence 565565554
No 463
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.33 E-value=12 Score=43.71 Aligned_cols=293 Identities=11% Similarity=0.090 Sum_probs=140.4
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCc
Q 002234 122 TELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 201 (949)
Q Consensus 122 ~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~ 201 (949)
+.+-..+.++..+..-.-++.|+..+.++.+..++. +-.+.+++.+.++|. +.+..|+.+|+.+|.++...+.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~------~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM------VEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC------HHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh------cccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCC
Confidence 333333444444444344677877788887744331 111245565666664 6789999999999999965543
Q ss_pred cceeeccccCCcHHHHHHHHhhChh----hHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHH
Q 002234 202 SVIHTLTRVESDVERIVALFKKGLL----EAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLL 277 (949)
Q Consensus 202 ~~~~~i~~~~~~i~~l~~llk~g~~----~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~ 277 (949)
... .+.-..+.+..|+..|..... ..-.+|..+.+.+.+. .-..++.+...++..+ ++-.....
T Consensus 193 ~~~-~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-~~~~l~~l~~~l~~~~----------~~V~~ea~ 260 (591)
T 2vgl_B 193 NSN-LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-AQSICERVTPRLSHAN----------SAVVLSAV 260 (591)
T ss_dssp SCC-SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-HHHHHHHHTTCSCSST----------THHHHHHH
T ss_pred Ccc-chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHcCCC----------hHHHHHHH
Confidence 221 010011224455555544322 2233445555443211 1112233333332211 11111111
Q ss_pred HHHhcCCccc-ccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCC
Q 002234 278 GQMIGDSEES-IVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD 356 (949)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~ 356 (949)
..+....+.. .+.+. ...+-.+..++|+.++. .+.+.|-.|...|....+..... +.. .+..+..++ ....
T Consensus 261 ~~i~~l~~~~~~~~~~-~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~---~~~--~~~~~~~~~-~d~~ 332 (591)
T 2vgl_B 261 KVLMKFLELLPKDSDY-YNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEI---LKQ--EIKVFFVKY-NDPI 332 (591)
T ss_dssp HHHHHSCCSCCBTTBS-HHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCST---TTT--CTTTTSCCT-TSCH
T ss_pred HHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHH---HHH--HHHhheecc-CChH
Confidence 1111111100 11122 12222345578887654 77888998888888776643321 111 111222111 1123
Q ss_pred cchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHH
Q 002234 357 GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAI 436 (949)
Q Consensus 357 ~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~ 436 (949)
..|..|++.|..+... ..+. ..|..|+.|++....+-+..++..+.++.. ++.-..+..+
T Consensus 333 ~Ir~~al~~L~~l~~~---~nv~------------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~-----~~~~~~~~~v 392 (591)
T 2vgl_B 333 YVKLEKLDIMIRLASQ---ANIA------------QVLAELKEYATEVDVDFVRKAVRAIGRCAI-----KVEQSAERCV 392 (591)
T ss_dssp HHHHHHHHHHHHTCCS---STHH------------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCh---hhHH------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hChhHHHHHH
Confidence 3455566666655322 1122 234456677777777767667777766632 2222345567
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHhc
Q 002234 437 DTLISCLRNSDYPAAQLAAAKTIVSL 462 (949)
Q Consensus 437 ~~l~~~l~~~~~~~~~~~~~~~l~~l 462 (949)
+.|++.|+.... .+...+..++..+
T Consensus 393 ~~Ll~ll~~~~~-~v~~e~i~~l~~i 417 (591)
T 2vgl_B 393 STLLDLIQTKVN-YVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccch-HHHHHHHHHHHHH
Confidence 888888876543 2333445555544
No 464
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.69 E-value=0.29 Score=49.77 Aligned_cols=49 Identities=10% Similarity=0.260 Sum_probs=38.7
Q ss_pred cccCcCccccccCceec-CCCccccHHHHHHHHhc-CCCCCCCCCCCCCCC
Q 002234 18 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPITRQKLSST 66 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~~-~cghtfc~~ci~~~~~~-~~~~CP~c~~~~~~~ 66 (949)
-..|.||.++..--+.= .|+|.|=..|+.+|+.. ++..||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45699999998854433 39999999999999875 346899999886644
No 465
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=89.69 E-value=25 Score=42.87 Aligned_cols=268 Identities=14% Similarity=0.164 Sum_probs=140.9
Q ss_pred hhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHH----HHHhhC----hhhHHHHHHhcCCC
Q 002234 167 PAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIV----ALFKKG----LLEAVVLIDLLRPS 238 (949)
Q Consensus 167 ~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~----~llk~g----~~~Aa~~l~~L~~~ 238 (949)
|.++..++..+. +.+..+.+.++.+|..+.......... ......++.++ .+++.. +..|..+|..+-..
T Consensus 127 p~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~-~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 127 PDLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDS-DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TTHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHH-CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhch-hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 344555666554 457788999999988875332211100 00112233333 333332 45666677665432
Q ss_pred hHH-H-HHh-hhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHH
Q 002234 239 TRT-L-IEM-DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAE 315 (949)
Q Consensus 239 ~~~-~-~~~-~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~ 315 (949)
..+ . ..+ +.++.|+..+..+..+ -..++.-.+..|........ .. .-.+.++.++..++..+.+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~-------vr~~a~~~L~~l~~~~~~~~-----~~-~l~~l~~~l~~~~~~~~~~ 271 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPE-------VRKNVCRALVMLLEVRMDRL-----LP-HMHNIVEYMLQRTQDQDEN 271 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHH-------HHHHHHHHHHHHHHHCHHHH-----GG-GHHHHHHHHHHHHTCSSHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHHHHhCHHHH-----HH-HHHHHHHHHHHHccCCcHH
Confidence 211 1 112 3346777665543211 12233444444433221110 01 1124568888898888888
Q ss_pred HHHHHHHHHHHhhhccCCchhhHhhhcCchhhH----HHHH----------hc------------CCcchhHHHHHHHHh
Q 002234 316 ERIAAVGILLRCMQEDGKCRNSIADKAELAPVM----ESFM----------AA------------SDGERFEIVCFLSEL 369 (949)
Q Consensus 316 ~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~----~ll~----------~~------------~~~~~~~~~~~l~~l 369 (949)
.|..|...+..+.+.. .+++.+.. .++.++ ..+. .. .-..|..|...|..|
T Consensus 272 vr~~a~e~l~~l~~~~-~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 272 VALEACEFWLTLAEQP-ICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp HHHHHHHHHHHHTTST-THHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcch-hHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 8999998888765433 34443321 222333 2221 11 112355556666665
Q ss_pred hhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCCh
Q 002234 370 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYP 449 (949)
Q Consensus 370 ~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~ 449 (949)
....... ++. ..|..+..+++...+..+..++..|..+.--. +.....|-++.++.|+..|.+. .+
T Consensus 349 a~~~~~~----~~~--------~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~-~~~~~~~l~~~l~~l~~~l~d~-~~ 414 (852)
T 4fdd_A 349 ANVYRDE----LLP--------HILPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYLPELIPHLIQCLSDK-KA 414 (852)
T ss_dssp HHHHGGG----GHH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT-HHHHGGGHHHHHHHHHHHTTCS-SH
T ss_pred HHhccHH----HHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHcCCC-CH
Confidence 5432111 111 24555666677766777777777777773211 1122346788899999998644 56
Q ss_pred HHHHHHHHHHHhcCccc
Q 002234 450 AAQLAAAKTIVSLQGRF 466 (949)
Q Consensus 450 ~~~~~~~~~l~~l~~~~ 466 (949)
.++..|+.+|.+++..+
T Consensus 415 ~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888999999987654
No 466
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.36 E-value=22 Score=36.82 Aligned_cols=218 Identities=17% Similarity=0.153 Sum_probs=103.8
Q ss_pred CceEEEEEeCCEEEEEeCCCcEEEEecCCCceeeeEEecccCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEE
Q 002234 669 GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-EIHCV 747 (949)
Q Consensus 669 ~~V~~l~~s~d~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~-~~~~~ 747 (949)
..|..++....+.+.-. ||.|..|-.... -.+..-......|..++...+.. ++. . ||.|..|-.... ++- .
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~--Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg-~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLN--GQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTT-V 96 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSS--STTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTC-C
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCC--CCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCC-C
Confidence 46888888777433335 999999976543 11111111233566666544332 233 4 899998876542 110 0
Q ss_pred EeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEecCCCCceEEEEeCCEEEEEECCCcEEEEECCCCceeeeec
Q 002234 748 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 827 (949)
Q Consensus 748 ~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 827 (949)
...... .|..++....+.+.-. ||.|..|-.........
T Consensus 97 -P~~~~~-------------------------------------~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-- 135 (282)
T 3qhy_B 97 -PAEARS-------------------------------------GVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-- 135 (282)
T ss_dssp -CGGGSS-------------------------------------SEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC--
T ss_pred -CcccCC-------------------------------------CeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC--
Confidence 000011 2233333333434444 77777776543221110
Q ss_pred ccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE-eecCCCcEEEEEEcCCEEEEEECCCeEEEEECC
Q 002234 828 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQK 906 (949)
Q Consensus 828 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~-~~~~~~~v~~l~~s~d~l~sgs~dg~I~vwd~~ 906 (949)
.......|..++...+..++++ || .|..|-......+. .......|..++...+..++- .||.|+.|-..
T Consensus 136 ----~~~~~~~i~~i~~G~~~~~~l~---~G-~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n 206 (282)
T 3qhy_B 136 ----PAEAQSGVTALDGGVYTALAVK---NG-GVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDN 206 (282)
T ss_dssp ----CGGGGSSEEEEEECSSEEEEEE---TT-EEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECC
T ss_pred ----CccCCCCeEEEEcccCEEEEEE---CC-EEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECC
Confidence 0011234666665555444332 44 77777654322111 111234567777666633333 57888888654
Q ss_pred CCcEEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 907 RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 907 ~~~~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
..-.+..- ......|..++...+. .++.. ||.|..|-
T Consensus 207 ~~gqlg~p-~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG 243 (282)
T 3qhy_B 207 RYKQTTVP-TEALSGVSAIASGEWY-SLALK--NGKVIAWG 243 (282)
T ss_dssp TTSTTCCC-GGGGSSCCEEEECSSC-EEEEE--TTEEEEES
T ss_pred CCCCCCCC-cccCCCceEEEcCCCE-EEEEE--CCEEEEec
Confidence 32211111 1112246666554332 22222 77777774
No 467
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.36 E-value=14 Score=47.02 Aligned_cols=234 Identities=9% Similarity=0.048 Sum_probs=120.0
Q ss_pred ccEEEEecCCCCeEEEecCCc--eeeecCCCCceEEEEEeCC-EEEEEeCCCcEEEEecCCCceeeeEEeccc----CCC
Q 002234 640 MVKVLSNGHDSSADFWNHREL--VHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREH----TKA 712 (949)
Q Consensus 640 ~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~~s~d-~lasgs~Dg~I~vWd~~t~~~~~i~~l~~H----~~~ 712 (949)
...++-- ...++.|+|+.+. +.... -+.+|.--.|-.+ .|+-.+ +..|.-|++.+.. .+...+..| ...
T Consensus 77 ~~iiALr-ag~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s-~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 77 SKVIALK-AGKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGES-QPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred cceEEEe-cCCeEEEeehHHhhhhcccc-cCCCceEEEecCCCeeEEEc-CCeEEEeccCCCC-ccHHHHhcchhcccCe
Confidence 3344443 3788999999742 22222 2456777788654 555444 3579999997532 566666666 456
Q ss_pred EEEEEEecCCCEEEEEe-------CCCcEEEEECCCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEE
Q 002234 713 VTGLAILQSGEMLYSGS-------LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 785 (949)
Q Consensus 713 V~~v~fspdg~~L~Sgs-------~Dg~I~vWd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~ 785 (949)
|..-..+++.++++..| -.|.+.+|.++.+..+.+..+ ...... +-.+|..
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegh--a~~F~~---------~~~~~~~----------- 210 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH--AASFAQ---------FKMEGNA----------- 210 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHh--Hhhhhe---------eccCCCC-----------
Confidence 77777788888877544 347788888777532222222 111111 1111110
Q ss_pred EecCCCCceEEEEeCCEEEEEECCCcEEEEECCCC---ceeeee-ccccccc--CCCCCEEEEEEeCCceEEEEEECCCC
Q 002234 786 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG---TFATIQ-TGHRKLL--GKANPVHALQVHNGLVYTASTSLDGA 859 (949)
Q Consensus 786 ~~~~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~~~~---~~~~~~-~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~Dg~ 859 (949)
....+.|++... ...+.+++.++... ...... ...-.++ ...+-..++..++....+...+.-|
T Consensus 211 ---~~~~l~~f~~~~------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G- 280 (1630)
T 1xi4_A 211 ---EESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG- 280 (1630)
T ss_pred ---CCceEEEEEEec------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCc-
Confidence 111122222211 11257777777543 111000 0000111 1123344666665444444444455
Q ss_pred EEEEEECCCCeeEEeec-CCCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc
Q 002234 860 AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 860 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~ 909 (949)
.|.++|+.++.++..-. ...+|...+.+.+ ++++....|.|.--.++...
T Consensus 281 ~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 99999999998876554 3344443333322 45555566655555544433
No 468
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.73 E-value=15 Score=36.56 Aligned_cols=99 Identities=9% Similarity=0.031 Sum_probs=58.4
Q ss_pred EEEEEEeCCceEEEEEECCCCEEEEEECCCCeeEE------ee-c-CCCcEEEEEEcCC-EEEEEECCCeEEEEECCCCc
Q 002234 839 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG------SL-P-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 909 (949)
Q Consensus 839 V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~~~------~~-~-~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~~~ 909 (949)
-..+.|++++.+.++ .|| .|.-++-.+...-. .+ . .-..+..+.+.|+ .|++.. |+.++-+...++.
T Consensus 90 F~a~~fD~~G~LYav--~dG-~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKD-KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE--ETT-EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe--CCC-EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCC
Confidence 368889999998888 456 78777753311110 01 1 1256899999999 677777 8886544433221
Q ss_pred ------EEEEeccccccceeEEEEeCCCCEEEEEeCCCcE
Q 002234 910 ------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 943 (949)
Q Consensus 910 ------~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I 943 (949)
....+-......-+-+.|.|+|.+.+.. +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 1111211222244557799998877665 7754
No 469
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.36 E-value=28 Score=40.61 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=43.3
Q ss_pred hhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhh
Q 002234 300 KVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK 371 (949)
Q Consensus 300 g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~ 371 (949)
.+++.|...+.+.+.+.|..|...|....+.... .+.+ ....++..+.......|..|++.|..+..
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 5678888888888888898888887776554321 1111 22344445555566667777877777754
No 470
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=88.18 E-value=5.8 Score=43.57 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCEEEEEECCCCeeEEeecC-----CCcEEEEEEcCC--EEEEEECCCeEEEEECCCCc------------EEEEeccc-
Q 002234 858 GAAVKMWSTSNYNMVGSLPT-----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI------------RIETLQTG- 917 (949)
Q Consensus 858 g~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~d--~l~sgs~dg~I~vwd~~~~~------------~~~~l~~~- 917 (949)
|+.||.-++......+.+.. -..+..+..||+ +++.. .+..|.|-.+..+. ..+.+.-+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 45888888875443333332 236788999998 45544 56689998877321 12233322
Q ss_pred ----cccceeEEEEeCCC---CEEEEEeCCCcEEEEeCC
Q 002234 918 ----TSGKVQCMALDDNE---EFLVIGTSDGRIQAWGLS 949 (949)
Q Consensus 918 ----h~~~I~~l~~spdg---~~L~sgs~Dg~I~iWdl~ 949 (949)
...+|..+.|+|-| ..|++-..|++|++||++
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 24579999999954 689999999999999984
No 471
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=87.91 E-value=16 Score=40.45 Aligned_cols=277 Identities=11% Similarity=0.056 Sum_probs=134.4
Q ss_pred hhHHhhhhhhhccCC-chhHHHHHHHHHHhhcccC-ccceeeccccCCcHHHHHHHHhhC------hhhHHHHHHhcCC-
Q 002234 167 PAVINGFVEILFNSV-DPRVLEATIFLLSELGSRD-KSVIHTLTRVESDVERIVALFKKG------LLEAVVLIDLLRP- 237 (949)
Q Consensus 167 ~~~~~~l~~~l~~s~-~~~~~~~av~~L~~l~~~~-~~~~~~i~~~~~~i~~l~~llk~g------~~~Aa~~l~~L~~- 237 (949)
|.++..++..+..+. +..+.+.++.+|..+...- ........ +.-++.++..|+.. +..|+.++..+-.
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345555666665543 7788999999999885432 11111111 12235555666543 2456666665532
Q ss_pred ChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHH
Q 002234 238 STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEER 317 (949)
Q Consensus 238 ~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~ 317 (949)
...+...-...+.++..+.....+... .-..+++-.+..+....... .........++.++..++..+.+.|
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~---~vr~~~~~~l~~l~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDT---RVRVAALQNLVKIMSLYYQY-----METYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSH---HHHHHHHHHHHHHHHHCGGG-----CTTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCchHHH
Confidence 222221111112234444332111000 11223444444444322111 0111111556888888888888889
Q ss_pred HHHHHHHHHhhhcc------------------CCchhhHhh--hcCchhhHHHHHhc-------CCcchhHHHHHHHHhh
Q 002234 318 IAAVGILLRCMQED------------------GKCRNSIAD--KAELAPVMESFMAA-------SDGERFEIVCFLSELV 370 (949)
Q Consensus 318 ~~a~~~l~~~~~~~------------------~~~r~~~~~--~~~~~~l~~ll~~~-------~~~~~~~~~~~l~~l~ 370 (949)
..|..++..+.+.. ..+..++.. ..-++.++..+... +...|..|..+|..|.
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 99988887776542 122222110 11112223333221 1244555666666654
Q ss_pred hccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChH
Q 002234 371 KLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPA 450 (949)
Q Consensus 371 ~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~ 450 (949)
..-... ++. ..|..+..+|+......+..+...+..+.--..+....-|-++.+..|+..|.+.+ +.
T Consensus 357 ~~~~~~----~~~--------~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~-~~ 423 (462)
T 1ibr_B 357 TCCEDD----IVP--------HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VV 423 (462)
T ss_dssp HHTTTT----HHH--------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC-HH
T ss_pred HhccHH----HHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC-HH
Confidence 432111 111 12333444555444444555555555542211112233345678999999997654 67
Q ss_pred HHHHHHHHHHhcCccc
Q 002234 451 AQLAAAKTIVSLQGRF 466 (949)
Q Consensus 451 ~~~~~~~~l~~l~~~~ 466 (949)
++..|+.+|..++..+
T Consensus 424 Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 424 VRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8989999999887654
No 472
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.88 E-value=43 Score=39.05 Aligned_cols=289 Identities=9% Similarity=0.084 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhcC-ChhHHH-------hhchhhHHhhhhhhhc---cCCchhHHHHHHHHHHhhcccCccceeeccc
Q 002234 141 EMAVLQIERCWLEASM-ELDIQI-------MLSKPAVINGFVEILF---NSVDPRVLEATIFLLSELGSRDKSVIHTLTR 209 (949)
Q Consensus 141 ~~a~~~i~~~~~~~~~-~~~~~~-------~l~~~~~~~~l~~~l~---~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~ 209 (949)
+-+++.+..+.++..+ |+.+.. .+..+.++..+++.|. .+.++-|.++|+.+|.++...+++...
T Consensus 103 e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~---- 178 (618)
T 1w63_A 103 DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME---- 178 (618)
T ss_dssp HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----
T ss_pred HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----
Confidence 3455556666666542 322211 1233344333333332 367899999999999998655553332
Q ss_pred cCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHH-HHh-hhhHHHHHHHHhc----cccchhcc-cCchhhHHHHHH
Q 002234 210 VESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL-IEM-DMMESLMTVIKKK----EEDFLKMC-LKPKSVSVLLLG 278 (949)
Q Consensus 210 ~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~-~~~-~~~~~lv~~l~~~----~~~~~~~~-~~~~~a~~~~~~ 278 (949)
..++.+..+|.-. ...|..+|+.+.....+. ... ..+|.|+.+|..- ........ ...+-.-..++.
T Consensus 179 --~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 179 --MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp --GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred --HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 2233444555432 345556888887665432 222 3348888888752 00000000 012222222222
Q ss_pred HHhcCCcccccccchhhhcchhhHHHHHHhhh------cccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHH
Q 002234 279 QMIGDSEESIVSSIANTIVSSKVFESVISSLE------AEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFM 352 (949)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~------~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~ 352 (949)
-| +..... ++. .+...++.|..+++ +.+......|+..+... .. ... + ....+.++..++.
T Consensus 257 ~L-~~l~~~-~~~-----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l---~~-~~~-l-~~~a~~~L~~~L~ 323 (618)
T 1w63_A 257 LL-RILGRN-DDD-----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI---KS-ESG-L-RVLAINILGRFLL 323 (618)
T ss_dssp HH-HHHTTT-CHH-----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS---CC-CHH-H-HHHHHHHHHHHHT
T ss_pred HH-HHhCCC-CHH-----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc---CC-CHH-H-HHHHHHHHHHHHh
Confidence 11 111000 000 01122234444332 12223333444444432 11 111 1 1235578888888
Q ss_pred hcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccH
Q 002234 353 AASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYR 432 (949)
Q Consensus 353 ~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r 432 (949)
+.....|..|+..|..+..... +.+ ++ ....++.+|...++.=+-.+..+|..+ .+... +
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~p-----~~~---~~-----~~~~i~~~l~d~d~~Ir~~alelL~~l---~~~~n--v-- 383 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTDH-----NAV---QR-----HRSTIVDCLKDLDVSIKRRAMELSFAL---VNGNN--I-- 383 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHH-----HHH---GG-----GHHHHHHGGGSSCHHHHHHHHHHHHHH---CCSSS--T--
T ss_pred CCCCchHHHHHHHHHHHHhhCH-----HHH---HH-----HHHHHHHHccCCChhHHHHHHHHHHHH---ccccc--H--
Confidence 8888999999988888876421 111 11 112355555544444344444444444 33322 2
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCcccccC
Q 002234 433 EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTS 469 (949)
Q Consensus 433 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 469 (949)
++-++.|+..+...+ .+.+..+.+++..++-+|...
T Consensus 384 ~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~~~~ 419 (618)
T 1w63_A 384 RGMMKELLYFLDSCE-PEFKADCASGIFLAAEKYAPS 419 (618)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhCcc
Confidence 345677777777644 466778999999999988654
No 473
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=85.59 E-value=42 Score=35.94 Aligned_cols=92 Identities=8% Similarity=-0.038 Sum_probs=52.5
Q ss_pred ccccccEEEEecCCCCeEEEecCCceeee------cCCCCceEEEEEeCC-----EEEEEeC----C----CcEEEEecC
Q 002234 636 LAFEMVKVLSNGHDSSADFWNHRELVHVD------SSENGKVLSIACFRD-----KIFSGHS----D----GTIKVWTGR 696 (949)
Q Consensus 636 ~~~~~~~l~s~s~dg~I~vWd~~~~~~~~------~~h~~~V~~l~~s~d-----~lasgs~----D----g~I~vWd~~ 696 (949)
+.+++..+ .+..++.|++++.... ... ....+....|+++|+ .|+.+.. + +.|..|+..
T Consensus 36 ~~pdG~l~-V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~ 113 (354)
T 3a9g_A 36 PLGGGRYL-VTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLD 113 (354)
T ss_dssp EEETTEEE-EEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred EcCCCeEE-EEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEEC
Confidence 44566644 4455688988875432 211 123456899999985 5544433 3 567778776
Q ss_pred CC--c---eeee-EEecc-cCCCEEEEEEecCCCEEEEEe
Q 002234 697 GS--I---LHLI-QQIRE-HTKAVTGLAILQSGEMLYSGS 729 (949)
Q Consensus 697 t~--~---~~~i-~~l~~-H~~~V~~v~fspdg~~L~Sgs 729 (949)
.+ . .+.+ ..+.. ....-..++|.|||.+.++.+
T Consensus 114 ~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 114 GSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp SSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 54 1 1112 22221 111246799999998777654
No 474
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=85.20 E-value=8.5 Score=44.87 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=45.5
Q ss_pred hhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhh
Q 002234 299 SKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 370 (949)
Q Consensus 299 ~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~ 370 (949)
.+.++.|.++|...+...+..|+.+|..+.+.+...+........+..++..+...+.-.+...+++|..+.
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC
Confidence 467799999999999999999999998887765432111111112344555555555555555566665543
No 475
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.47 E-value=17 Score=39.11 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=66.7
Q ss_pred EEEEECCCcEEEEECCCCceeeeeccc-ccccCCCCCEEEEEEeCC----ceEEEEEECC------CCEEEEEECCCC--
Q 002234 803 VYCGCQDGAIQEIDLATGTFATIQTGH-RKLLGKANPVHALQVHNG----LVYTASTSLD------GAAVKMWSTSNY-- 869 (949)
Q Consensus 803 l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~----~~~l~s~s~D------g~~I~iwd~~~~-- 869 (949)
++++...|.|++++.. +.....+... ............++++|+ +.+.++.+.. ...|..|+....
T Consensus 32 l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~ 110 (353)
T 2g8s_A 32 MLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLS 110 (353)
T ss_dssp EEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSS
T ss_pred EEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCC
Confidence 5566667888888743 3221111100 111122345789999984 4444443321 125666666432
Q ss_pred e--eE----EeecC----CCcEEEEEEcCC-EEEEEECC--------------CeEEEEECCCCc------------EEE
Q 002234 870 N--MV----GSLPT----LSEVRAMVVSSE-LVYLGCKG--------------GTVEIWDQKRQI------------RIE 912 (949)
Q Consensus 870 ~--~~----~~~~~----~~~v~~l~~s~d-~l~sgs~d--------------g~I~vwd~~~~~------------~~~ 912 (949)
. .. ..+.. ......++|.|| .|+.+..| |.|.-+|....- ...
T Consensus 111 ~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~ 190 (353)
T 2g8s_A 111 KVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAE 190 (353)
T ss_dssp BEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTT
T ss_pred CCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCcc
Confidence 1 11 11221 122467999999 55555433 467777765320 112
Q ss_pred EeccccccceeEEEEeC-CCCEEEE
Q 002234 913 TLQTGTSGKVQCMALDD-NEEFLVI 936 (949)
Q Consensus 913 ~l~~~h~~~I~~l~~sp-dg~~L~s 936 (949)
.+..+|. ....++|+| +|.+.++
T Consensus 191 i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 191 IWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp EEEECCS-EEEEEEEETTTTEEEEE
T ss_pred EEEEcCc-CccceEEECCCCCEEEE
Confidence 2222444 478899999 5554443
No 476
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.28 E-value=1.3 Score=44.07 Aligned_cols=102 Identities=6% Similarity=0.026 Sum_probs=60.8
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee------EEeec--CCCcEEEEEEcCC-EEEEEECCCeEEEEECCC
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM------VGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR 907 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~------~~~~~--~~~~v~~l~~s~d-~l~sgs~dg~I~vwd~~~ 907 (949)
..+..++|+|++.+.+. .+| .+.-.+..+... -..+- .-....++.|.|+ .|++. .||.|+-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G-~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCC-eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36779999999887776 445 655555443111 11111 1122578889999 45555 679998888644
Q ss_pred CcEE------EEeccccccceeEEEEeCCCCEEEEEeCCCcEE
Q 002234 908 QIRI------ETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 944 (949)
Q Consensus 908 ~~~~------~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~ 944 (949)
...- ..+-.+--..+..|.|.|+|.+.+.. ||.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2211 11111112468999999999866655 77754
No 477
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.10 E-value=63 Score=35.96 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCceEEEEEeCC-EEEEEeCCC-cEEEEecCCCceeeeEEecc------cCCCEEEEEEecC---CCEEEEE
Q 002234 668 NGKVLSIACFRD-KIFSGHSDG-TIKVWTGRGSILHLIQQIRE------HTKAVTGLAILQS---GEMLYSG 728 (949)
Q Consensus 668 ~~~V~~l~~s~d-~lasgs~Dg-~I~vWd~~t~~~~~i~~l~~------H~~~V~~v~fspd---g~~L~Sg 728 (949)
-...++++|.|+ .|+.+...| .|++++..++....+..+.. .......|+|+|+ +..|+.+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 345679999997 555556665 69888876664344444432 2456789999995 4444443
No 478
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=82.63 E-value=18 Score=46.27 Aligned_cols=262 Identities=15% Similarity=0.124 Sum_probs=138.1
Q ss_pred CCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhcCCChHHHHHhh-hhHHHHHH
Q 002234 180 SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD-MMESLMTV 254 (949)
Q Consensus 180 s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L~~~~~~~~~~~-~~~~lv~~ 254 (949)
+.|..+...|..-|.+....+...... ...+.-++.|+..|... +..|+.+|..+...-.+ ..+. .++.|+..
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~~~~~-~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~ 94 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSIKLDD-DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTN 94 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCCSCCT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHcccccCCCh-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 567777777777777653322110000 00001234555555433 44566666666422111 1122 22555554
Q ss_pred HHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhh-cccHHHHHHHHHHHHHhhhccCC
Q 002234 255 IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE-AEWAEERIAAVGILLRCMQEDGK 333 (949)
Q Consensus 255 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~-~~~~~~~~~a~~~l~~~~~~~~~ 333 (949)
+..... . -..++...+.++...............-.....+|.|++.+. +++.+.|..|..+|..++...+.
T Consensus 95 l~d~~~-~------vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 95 MLSDKE-Q------LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp TTCSSS-H------HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred hcCCcH-H------HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 433221 1 123344445555432211100000011123456799999998 58888999999999888765432
Q ss_pred -chhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHHHHHhhcC-Cccchh
Q 002234 334 -CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN-HDQCPV 411 (949)
Q Consensus 334 -~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~-~~~~~~ 411 (949)
...++ ..-++.++..|...+...|..|+..|..+....... ---..|+.++..|+... ++.+..
T Consensus 168 ~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~------------~~~~~l~~l~~~L~~~~~~~~r~~ 233 (1230)
T 1u6g_C 168 LLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI------------VFVDLIEHLLSELSKNDSMSTTRT 233 (1230)
T ss_dssp SCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH------------HHHHHHHHHHHHhccCCchhHHHH
Confidence 11111 123345555666666677888888888876542211 01124788888887764 245555
Q ss_pred HHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCccc
Q 002234 412 VAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRF 466 (949)
Q Consensus 412 ~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~ 466 (949)
+...+..+... -+.+..-|-++-++.++..+...+ +.++..|..++..+...+
T Consensus 234 a~~~l~~l~~~-~~~~~~~~l~~l~~~ll~~l~d~~-~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 234 YIQCIAAISRQ-AGHRIGEYLEKIIPLVVKFCNVDD-DELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHH-SSGGGTTSCTTHHHHHHHHHSSCC-TTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHC
Confidence 66666655322 133444466788999999987554 345667777777775543
No 479
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=82.46 E-value=39 Score=40.86 Aligned_cols=284 Identities=10% Similarity=0.114 Sum_probs=136.4
Q ss_pred HhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC---hhhHHHHHHhcCCC-----hHH
Q 002234 170 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---LLEAVVLIDLLRPS-----TRT 241 (949)
Q Consensus 170 ~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g---~~~Aa~~l~~L~~~-----~~~ 241 (949)
+..++..+. ..++.+.+++..+|.++...-......-.-.+..++.|+..|+.. ...|+.+|..+... ...
T Consensus 413 l~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 413 LPSILNLMN-DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchh
Confidence 333444433 356788888888888775321110000000122335555556543 23455566555211 111
Q ss_pred H-HHhh-hhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcc-------
Q 002234 242 L-IEMD-MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAE------- 312 (949)
Q Consensus 242 ~-~~~~-~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~------- 312 (949)
+ ..+. .++.|+..+.....+. .-+.+++-.+..++...+.. ... .-...++.+++.+..-
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~-----~vr~~a~~al~~l~~~~~~~-----~~~-~~~~l~~~l~~~l~~~~~~~~~i 560 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEF-----NARASAFSALTTMVEYATDT-----VAE-TSASISTFVMDKLGQTMSVDENQ 560 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGG-----GHHHHHHHHHHHHHHHCCGG-----GHH-HHHHHHHHHHHHHHHHTTSCGGG
T ss_pred hHHHHHHHHHHHHHHHhCcCcch-----HHHHHHHHHHHHHHHHcchh-----hHH-HHHHHHHHHHHHHHHHHhhhccc
Confidence 1 1111 2356666665422111 12344555555555433221 111 1123446777776531
Q ss_pred --------cHHHHHHHHHHHHHhhhccCC-chhhHhhhcCchhhHHHHHhcCC-cchhHHHHHHHHhhhccccchhHHHH
Q 002234 313 --------WAEERIAAVGILLRCMQEDGK-CRNSIADKAELAPVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQIL 382 (949)
Q Consensus 313 --------~~~~~~~a~~~l~~~~~~~~~-~r~~~~~~~~~~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~r~~~~~~~l 382 (949)
..+.+..+..+|..+++.-+. +..++. .-++.++.++..... ..|..++.++..+....... ....+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~l 637 (861)
T 2bpt_A 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-FEKYL 637 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HHHHH
Confidence 223355666666666655443 222111 122344555665554 66777777777665432221 11111
Q ss_pred HHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHh
Q 002234 383 HIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSD-YPAAQLAAAKTIVS 461 (949)
Q Consensus 383 ~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~ 461 (949)
. ..|..++.+|....++-+..+..++..+..-. .....-|-.+-++.++..|.+.+ .+.++..+..++..
T Consensus 638 ~--------~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~ 708 (861)
T 2bpt_A 638 E--------TFSPYLLKALNQVDSPVSITAVGFIADISNSL-EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGD 708 (861)
T ss_dssp H--------HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-chhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHH
Confidence 1 13555666665444444555555555442211 11233456677888888888764 35667788888887
Q ss_pred cCcccccCChhhHHHH
Q 002234 462 LQGRFTTSGKSLTRAM 477 (949)
Q Consensus 462 l~~~~~~~g~~~~~~~ 477 (949)
+...+...=.||...-
T Consensus 709 l~~~~~~~~~~~l~~~ 724 (861)
T 2bpt_A 709 IASNIGADFIPYLNDI 724 (861)
T ss_dssp HHHHHGGGGHHHHHHH
T ss_pred HHHHhhhhHHHHHHHH
Confidence 7665533333444433
No 480
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=82.45 E-value=24 Score=35.26 Aligned_cols=180 Identities=10% Similarity=0.057 Sum_probs=105.7
Q ss_pred cccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCC
Q 002234 133 MSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVES 212 (949)
Q Consensus 133 ~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~ 212 (949)
.+..-.++++++..+..+.....+-.. -.-..+++.+...|....+..+...|..+|..|+..- .
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~----~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-------~---- 89 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLEN----GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL-------A---- 89 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCC----CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-------G----
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-------h----
Confidence 355566678888888888765222000 0112334545555543567788888888887773210 0
Q ss_pred cHHHHHHHHhhChhhHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccc
Q 002234 213 DVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSI 292 (949)
Q Consensus 213 ~i~~l~~llk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (949)
+.- ..-....+|+|+..+...+. .-..++...+..++....
T Consensus 90 ------------------------~~~-~~~~~~ilp~ll~~l~d~~~-------~vr~~a~~aL~~~~~~~~------- 130 (242)
T 2qk2_A 90 ------------------------KRF-SNYASACVPSLLEKFKEKKP-------NVVTALREAIDAIYASTS------- 130 (242)
T ss_dssp ------------------------GGG-HHHHHHHHHHHHHGGGCCCH-------HHHHHHHHHHHHHHTTSC-------
T ss_pred ------------------------hhH-HHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHcCC-------
Confidence 000 00111233677766655321 112344555554533221
Q ss_pred hhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCC---chhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHh
Q 002234 293 ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK---CRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 369 (949)
Q Consensus 293 ~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~---~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l 369 (949)
-...++.|...+++.+...|..++.+|..++..-+. ...++. .-++.++.++.....+.|..|+..|..+
T Consensus 131 -----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 131 -----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 123458899999999999999999999988766432 122222 2456777778777888899999888888
Q ss_pred hhcc
Q 002234 370 VKLN 373 (949)
Q Consensus 370 ~~~~ 373 (949)
...-
T Consensus 204 ~~~v 207 (242)
T 2qk2_A 204 IKLM 207 (242)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7653
No 481
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.62 E-value=37 Score=40.32 Aligned_cols=133 Identities=10% Similarity=0.059 Sum_probs=66.0
Q ss_pred CcEEEEECCCCceeeeecccccccCCCCCEEEEEE-eCCceEEEEEECCC-CEEEEEECCCCeeEEee-----c-CCCcE
Q 002234 810 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV-HNGLVYTASTSLDG-AAVKMWSTSNYNMVGSL-----P-TLSEV 881 (949)
Q Consensus 810 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~Dg-~~I~iwd~~~~~~~~~~-----~-~~~~v 881 (949)
..+.+||+.+++....-.......+ .+.+. ..+..|++ |+.++ ..+.+||..+..-...- + .....
T Consensus 468 ~dv~~yd~~t~~W~~~~~~p~~R~~-----h~~~~~~~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 468 SDNWIFDMKTREWSMIKSLSHTRFR-----HSACSLPDGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp CCCEEEETTTTEEEECCCCSBCCBS-----CEEEECTTSCEEEE-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCccc-----ceEEEEcCCEEEEE-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccce
Confidence 3578899988766543211111111 23333 34444444 44332 26889998876543321 1 11222
Q ss_pred EEEEEcC--C-EEEEEEC--C-----CeEEEEECCCCcE-----EEEecc--ccccceeEEEEeCCCCEEEEEeCC----
Q 002234 882 RAMVVSS--E-LVYLGCK--G-----GTVEIWDQKRQIR-----IETLQT--GTSGKVQCMALDDNEEFLVIGTSD---- 940 (949)
Q Consensus 882 ~~l~~s~--d-~l~sgs~--d-----g~I~vwd~~~~~~-----~~~l~~--~h~~~I~~l~~spdg~~L~sgs~D---- 940 (949)
.++.+.. + .++.|+. + +.+.+||+.+.+. ...+.. .....-.+++...++++++.||.+
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL 621 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC
Confidence 3345453 3 5555654 2 4689999987761 122211 011111122333347788888743
Q ss_pred ----CcEEEEeC
Q 002234 941 ----GRIQAWGL 948 (949)
Q Consensus 941 ----g~I~iWdl 948 (949)
..|.+||+
T Consensus 622 ~~~~~~v~~yd~ 633 (695)
T 2zwa_A 622 FDRTNSIISLDP 633 (695)
T ss_dssp CCTTTSEEEEET
T ss_pred CCCCCeEEEEEC
Confidence 45778875
No 482
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=80.19 E-value=23 Score=43.02 Aligned_cols=157 Identities=16% Similarity=0.117 Sum_probs=87.7
Q ss_pred hhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhh--cCchhhHHHHHhcCCcchhHHHHHHHHhhhccccch
Q 002234 300 KVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADK--AELAPVMESFMAASDGERFEIVCFLSELVKLNRRTF 377 (949)
Q Consensus 300 g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~--~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~ 377 (949)
..++.+.+.+.+.+.+.|..|+.+|..+.+..+ ...+... .-++.++..+...+...|..++..|..+...-....
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~--~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 445778888888899999998888877753221 1222111 123445555555566667666666655543210000
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhh-hcccC--CCCCCccHHHHHHHHHHHhhcCCC-hHHHH
Q 002234 378 NEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQL-DLLAE--PRKMSIYREEAIDTLISCLRNSDY-PAAQL 453 (949)
Q Consensus 378 ~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l-~~l~~--~~~~~~~r~~~~~~l~~~l~~~~~-~~~~~ 453 (949)
....---..+..++..|+.. ++-+..++..|..+ +.+.+ +....-|=++-++.|+..+.+.+. ++++.
T Consensus 447 -------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~ 518 (861)
T 2bpt_A 447 -------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518 (861)
T ss_dssp -------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHH
T ss_pred -------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHH
Confidence 00000112345566666442 33333344555444 22221 233345667788999999987664 56788
Q ss_pred HHHHHHHhcCccc
Q 002234 454 AAAKTIVSLQGRF 466 (949)
Q Consensus 454 ~~~~~l~~l~~~~ 466 (949)
.+.++|..+....
T Consensus 519 ~a~~al~~l~~~~ 531 (861)
T 2bpt_A 519 SAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 8899998886553
No 483
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=79.59 E-value=34 Score=34.57 Aligned_cols=181 Identities=11% Similarity=0.066 Sum_probs=100.4
Q ss_pred hhhhhccCCchhHHHHHHHHHHh-hcccCccceeeccccCCc----HHHHHHHHhhC-----hhhHHHHHHhcCC----C
Q 002234 173 FVEILFNSVDPRVLEATIFLLSE-LGSRDKSVIHTLTRVESD----VERIVALFKKG-----LLEAVVLIDLLRP----S 238 (949)
Q Consensus 173 l~~~l~~s~~~~~~~~av~~L~~-l~~~~~~~~~~i~~~~~~----i~~l~~llk~g-----~~~Aa~~l~~L~~----~ 238 (949)
|-+.| .|.+-+..++|+..|.. +....+ ++...++. +..|...+... ...|..+|..|.. .
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~----~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTK----KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCC----CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCC----ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 44444 45666777788888887 743211 22211223 23444555222 3455556666541 1
Q ss_pred hHH-HHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcc-h-hhHHHHHHhhhcccHH
Q 002234 239 TRT-LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVS-S-KVFESVISSLEAEWAE 315 (949)
Q Consensus 239 ~~~-~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-~-g~i~~l~~~l~~~~~~ 315 (949)
.-+ .-....+|+++..+.+... .-..++.+.+..++... +. ..... . -.++.|...+++.+..
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~-------~V~~aa~~al~~i~~~~----~~---~~~~~~l~~ll~~l~~~l~~k~~~ 161 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKP-------SVIEAIRKALLTICKYY----DP---LASSGRNEDMLKDILEHMKHKTPQ 161 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCH-------HHHHHHHHHHHHHHHHS----CT---TCTTCTTHHHHHHHHHHTTCSSHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHc----cc---cccCCcHHHHHHHHHHHHcCCChH
Confidence 111 1122244888887765431 11233344444442211 00 11111 2 3458899999999999
Q ss_pred HHHHHHHHHHHhhhccCCchhhHhh---hcCchhhHHHHHhcCCcchhHHHHHHHHhhhc
Q 002234 316 ERIAAVGILLRCMQEDGKCRNSIAD---KAELAPVMESFMAASDGERFEIVCFLSELVKL 372 (949)
Q Consensus 316 ~~~~a~~~l~~~~~~~~~~r~~~~~---~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (949)
.|..+..+|..|+...+.....+.. ..-++.+..++.......|..|++.|..+...
T Consensus 162 vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 162 IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998876653121111 22345666677777778899999888888765
No 484
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=79.43 E-value=21 Score=38.29 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=63.7
Q ss_pred CCEEEEEEeCCceEEEEEECCCCEEEEEECCCCee--EEeec-----CCCcEEEEEEcCC-----EEEEE---ECCCeEE
Q 002234 837 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP-----TLSEVRAMVVSSE-----LVYLG---CKGGTVE 901 (949)
Q Consensus 837 ~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~~~--~~~~~-----~~~~v~~l~~s~d-----~l~sg---s~dg~I~ 901 (949)
.....|+|.|++.++++-...| .|++++..++.. +..+. .......|+++|+ .+++. ..++.|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G-~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEA-TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTC-EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCC-EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 4577999999998877764355 899988765543 22221 3567899999986 35443 2455666
Q ss_pred EEECCCC----------cEE-EEeccccccceeEEEEeCCCCEEEEEeC
Q 002234 902 IWDQKRQ----------IRI-ETLQTGTSGKVQCMALDDNEEFLVIGTS 939 (949)
Q Consensus 902 vwd~~~~----------~~~-~~l~~~h~~~I~~l~~spdg~~L~sgs~ 939 (949)
-|....+ +.+ ..+..+....-..|.|.|||.+.++.++
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 6765541 122 2232111123577999999987777553
No 485
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=79.33 E-value=12 Score=37.34 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=88.6
Q ss_pred chhhHHHHHHhhhcccHHHHHHHHHHHHHhhhc-cCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhc---c
Q 002234 298 SSKVFESVISSLEAEWAEERIAAVGILLRCMQE-DGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL---N 373 (949)
Q Consensus 298 ~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~-~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~ 373 (949)
.++.+..|.+.+...+..-|.+|..+|=..+.. ++.-|..+.++ -++-+++++.+.+++....|+++|-.|+.. .
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 345677888888888888888888887666555 33434333332 346778888888888888887777766653 2
Q ss_pred ccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHH
Q 002234 374 RRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQL 453 (949)
Q Consensus 374 r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~~~~~~r~~~~~~l~~~l~~~~~~~~~~ 453 (949)
..+ +. -.+|+|.-.+.+..+--..-+|-.|.-+..+. ..+| -+..|...+ ++.+.++|.
T Consensus 110 ~~~----y~---------Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~-----~~~~--V~~~l~sLl-~Skd~~vK~ 168 (265)
T 3b2a_A 110 SKT----FL---------KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE-----DSKL--VRTYINELV-VSPDLYTKV 168 (265)
T ss_dssp HHH----HH---------HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-----CCHH--HHHHHHHHH-TCSSHHHHH
T ss_pred HHH----HH---------HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc-----chHH--HHHHHHHHH-hCCChhHHH
Confidence 211 11 12333333333222222223677777774432 1222 344445555 777888998
Q ss_pred HHHHHHHhcCcc
Q 002234 454 AAAKTIVSLQGR 465 (949)
Q Consensus 454 ~~~~~l~~l~~~ 465 (949)
.+-++|++.+++
T Consensus 169 agl~~L~eia~~ 180 (265)
T 3b2a_A 169 AGFCLFLNMLNS 180 (265)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHhhcc
Confidence 888999998884
No 486
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=79.24 E-value=23 Score=35.37 Aligned_cols=177 Identities=10% Similarity=0.123 Sum_probs=104.4
Q ss_pred HhhhhhhhccCCchhHHHHHHHHHHhhcccCccceeeccccCCcHHHHHHHHhhC----hhhHHHHHHhc-C---CChHH
Q 002234 170 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLL-R---PSTRT 241 (949)
Q Consensus 170 ~~~l~~~l~~s~~~~~~~~av~~L~~l~~~~~~~~~~i~~~~~~i~~l~~llk~g----~~~Aa~~l~~L-~---~~~~~ 241 (949)
+.-+.++| ...|+.++.+++++|-++..+-+...+... .+--++.++.++|.. ...|...|--| . +.+++
T Consensus 35 l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 35 LFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 44455555 557889999999999999766222222111 344567777777765 44555544333 2 33333
Q ss_pred HHHhhhhHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccc-hhhhcchhhHHHHHHhhhcccHHHHHHH
Q 002234 242 LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSI-ANTIVSSKVFESVISSLEAEWAEERIAA 320 (949)
Q Consensus 242 ~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~i~~~g~i~~l~~~l~~~~~~~~~~a 320 (949)
-.-+. ..|+.++.++.+. -..+..+.+ +. .......+.+..+.+++++.+.+.|.++
T Consensus 113 y~Kl~--~aL~dlik~~~~i----------l~~eaae~L----------gklkv~~~~~~V~~~l~sLl~Skd~~vK~ag 170 (265)
T 3b2a_A 113 FLKAA--KTLVSLLESPDDM----------MRIETIDVL----------SKLQPLEDSKLVRTYINELVVSPDLYTKVAG 170 (265)
T ss_dssp HHHHH--HHHHHHTTSCCHH----------HHHHHHHHH----------HHCCBSCCCHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHH--HHHHHHhcCCCch----------HHHHHHHHh----------CcCCcccchHHHHHHHHHHHhCCChhHHHHH
Confidence 22222 5666666644321 122222222 11 2233356777999999999999999999
Q ss_pred HHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhcc
Q 002234 321 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN 373 (949)
Q Consensus 321 ~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (949)
..+|++.....++-... +.-+.-+-++|.+.+.--+..|+..|-+.+.-|
T Consensus 171 l~~L~eia~~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 171 FCLFLNMLNSSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHGGGCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 99999876554432211 112223445677777777888888888887754
No 487
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=78.68 E-value=5.7 Score=35.69 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=47.4
Q ss_pred hHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHh
Q 002234 301 VFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 369 (949)
Q Consensus 301 ~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l 369 (949)
.++.|++.++..+...|..|+.+|.+.- +...+++|+.+|...+...|..|+..|..+
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3699999999999999999999887542 123578899999988989999888888776
No 488
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.02 E-value=32 Score=41.82 Aligned_cols=77 Identities=13% Similarity=0.004 Sum_probs=45.5
Q ss_pred hHHHHHHhh-hcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccc---
Q 002234 301 VFESVISSL-EAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT--- 376 (949)
Q Consensus 301 ~i~~l~~~l-~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~--- 376 (949)
.++.+++.+ +.++...|-.|+-+|-......+. ...+..|..+++......|..|+..|..+......+
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~ 684 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNP 684 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccch
Confidence 456666644 478888888887777644322221 112334555666677777888887777776653332
Q ss_pred hhHHHHHH
Q 002234 377 FNEQILHI 384 (949)
Q Consensus 377 ~~~~~l~~ 384 (949)
.+.+++++
T Consensus 685 rva~~l~~ 692 (963)
T 4ady_A 685 QVADINKN 692 (963)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 34455554
No 489
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=76.46 E-value=64 Score=32.92 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=56.9
Q ss_pred hHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCc---hhhHHHHHhcCCcchhHHHHHHHHhhhcc
Q 002234 301 VFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAEL---APVMESFMAASDGERFEIVCFLSELVKLN 373 (949)
Q Consensus 301 ~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~---~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 373 (949)
..+.+++.+++.+.+.|+-....|.++++..|.- ....+ +.+..++-+.+...|..|++.+.+++...
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 4588899999999999999999999999988774 23356 66777788888889999999999999873
No 490
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=76.33 E-value=0.63 Score=31.05 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=12.7
Q ss_pred cccCcCccccccCcee
Q 002234 18 DFVCPITTHIFDDPVT 33 (949)
Q Consensus 18 ~~~Cpic~~~~~dPv~ 33 (949)
-|.||||+.-+..|-.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4899999988877654
No 491
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.75 E-value=4 Score=32.54 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCCcccCcCccccccCceecCC----CccccHHHHHHHHhc
Q 002234 15 PPKDFVCPITTHIFDDPVTLET----GQTYERRAIQEWIER 51 (949)
Q Consensus 15 ~~~~~~Cpic~~~~~dPv~~~c----ghtfc~~ci~~~~~~ 51 (949)
.-..+.|.+|.+-++|---+-| +|.||-.|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3567899999999999877655 799999999887753
No 492
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.69 E-value=4.2 Score=33.74 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=38.7
Q ss_pred CCcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 002234 16 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 69 (949)
Q Consensus 16 ~~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 69 (949)
-..+-|-.|-.-.+ -.+.+.-|-+|..|+..-+... ..||+|++++..+--+
T Consensus 26 ~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSS-SEETTTTEECCCCSCT
T ss_pred cCcccChhhccccC-CeeeecchhhHHHHHHHHHhhc-cCCcccCCcCCcceec
Confidence 35567988876555 3444666999999999877664 4899999999866543
No 493
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=74.22 E-value=1e+02 Score=33.30 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=128.7
Q ss_pred ceEEEEEeCCEEEEEeCCCcEEEEecCCC---------ceeeeEEecc-cCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 002234 670 KVLSIACFRDKIFSGHSDGTIKVWTGRGS---------ILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTARVWSI 739 (949)
Q Consensus 670 ~V~~l~~s~d~lasgs~Dg~I~vWd~~t~---------~~~~i~~l~~-H~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~ 739 (949)
.|..++...+..+.-..||.|..|-.... .......+.. ....+..++++....+.+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 46677766677777788999999954321 0001111111 2234555677766677777888999999975
Q ss_pred CCCeeEEEEeecCCCceeeeeeccceEEEEeCCCEEEEEEecCeEEEec--CCCCceEEEEeCCEEEEEECCCcEEEEEC
Q 002234 740 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--SSKYPKCLALVQGKVYCGCQDGAIQEIDL 817 (949)
Q Consensus 740 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~fsp~g~~l~~~~~~g~i~~~~--~~~~v~~v~~~~~~l~sgs~Dg~I~iwd~ 817 (949)
.... + ..+...... ..| .... ....|..++....+.++-..||.|..|-.
T Consensus 134 n~~G-q----LG~g~~~~~---------~~p--------------~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 134 AEDG-K----LGHGNRSPC---------DRP--------------RVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp CGGG-T----TCSSSCCCE---------EEE--------------EECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCC-c----CCCCCCccC---------cCC--------------eEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCC
Confidence 4310 0 000000000 000 0000 01134444444555666678888888865
Q ss_pred CCC-c-----eeeeecccccccCCCCCEEEEEEeCCceEEEEEECCCCEEEEEECCCC-----------eeEEeec--CC
Q 002234 818 ATG-T-----FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-----------NMVGSLP--TL 878 (949)
Q Consensus 818 ~~~-~-----~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~Dg~~I~iwd~~~~-----------~~~~~~~--~~ 878 (949)
... + ......+..........|..++......+.+....|| .|..|-.... .....+. ..
T Consensus 186 n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 264 (389)
T 3kci_A 186 GRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG 264 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTT-EEEEEECCGGGTTSSSSCCCEEEEEECGGGTT
T ss_pred CCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCC-EEEEEeCCCCCCCCCCCCCCccccEEecccCC
Confidence 321 1 0000000011111224577777654334445555665 8999965321 1111222 23
Q ss_pred CcEEEEEEcCCEEEEEECCCeEEEEECCCCc-----------EEEEeccccccceeEEEEeCCCCEEEEEeCCCcEEEEe
Q 002234 879 SEVRAMVVSSELVYLGCKGGTVEIWDQKRQI-----------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 947 (949)
Q Consensus 879 ~~v~~l~~s~d~l~sgs~dg~I~vwd~~~~~-----------~~~~l~~~h~~~I~~l~~spdg~~L~sgs~Dg~I~iWd 947 (949)
..|..++...+..++-..+|.|+.|-....- ....+.......|..++.. ....+.-..||.|+.|-
T Consensus 265 ~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG 342 (389)
T 3kci_A 265 LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWG 342 (389)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEE
T ss_pred CcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEee
Confidence 4577888878877777899999999764311 1112211112245565553 34455567899999985
Q ss_pred C
Q 002234 948 L 948 (949)
Q Consensus 948 l 948 (949)
-
T Consensus 343 ~ 343 (389)
T 3kci_A 343 D 343 (389)
T ss_dssp C
T ss_pred C
Confidence 3
No 494
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.92 E-value=0.15 Score=42.45 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=29.4
Q ss_pred CcccCcCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 002234 17 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 64 (949)
Q Consensus 17 ~~~~Cpic~~~~~dPv~~~cghtfc~~ci~~~~~~~~~~CP~c~~~~~ 64 (949)
.+..||.|+..|.. .-|+.+|..|-..... ...||.|++++.
T Consensus 31 M~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 45899999998762 2455669999443221 237999999875
No 495
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=72.73 E-value=38 Score=41.10 Aligned_cols=153 Identities=14% Similarity=0.020 Sum_probs=86.7
Q ss_pred hhHHHHHHhhhc-------ccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhc
Q 002234 300 KVFESVISSLEA-------EWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL 372 (949)
Q Consensus 300 g~i~~l~~~l~~-------~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (949)
..++.++..+.. ++...|..|+.+|..+....+. . +.. .-++.+...+.+.+.+.|..|+.+|..+..-
T Consensus 321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~-~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D-IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G-GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h-hHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 345777777752 3455677777776655444331 1 111 1122233344555667788888888777643
Q ss_pred cccchhHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCC-CCCccHHHHHHHHHHHhhcCCChHH
Q 002234 373 NRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPR-KMSIYREEAIDTLISCLRNSDYPAA 451 (949)
Q Consensus 373 ~r~~~~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l~~l~~~~-~~~~~r~~~~~~l~~~l~~~~~~~~ 451 (949)
.........+. ..+..++..|+...+.-+-.++..|.++.-...+. ...-|-+..++.|+..|.+. +.+
T Consensus 397 ~~~~~~~~~~~--------~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~v 466 (876)
T 1qgr_A 397 PEPSQLKPLVI--------QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE--PRV 466 (876)
T ss_dssp SCHHHHHHHHH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC--HHH
T ss_pred CCHHHHHHHHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC--HHH
Confidence 21011111111 13455666665544444556677777764322111 12346778899999999763 778
Q ss_pred HHHHHHHHHhcCccc
Q 002234 452 QLAAAKTIVSLQGRF 466 (949)
Q Consensus 452 ~~~~~~~l~~l~~~~ 466 (949)
+..|+.+|.++...+
T Consensus 467 ~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 467 ASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 496
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=72.47 E-value=13 Score=37.45 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=91.6
Q ss_pred hhHHHHHHhhh-cccHHHHHHHHHHHHHhhhccCC-chhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhccccch
Q 002234 300 KVFESVISSLE-AEWAEERIAAVGILLRCMQEDGK-CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTF 377 (949)
Q Consensus 300 g~i~~l~~~l~-~~~~~~~~~a~~~l~~~~~~~~~-~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~r~~~ 377 (949)
..++.|...+. ..+...+..|..+|..+...-+. ...++ ..-+++++..+...+...|..|..+|.++.....
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---
Confidence 44578888884 78888888888888777643221 11111 2245677777777777788888888888865321
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHhhcCCccchhHHHHHHhh-hcccCCCC-CCccHHHHHHHHHHHhhcCCChHHHHHH
Q 002234 378 NEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQL-DLLAEPRK-MSIYREEAIDTLISCLRNSDYPAAQLAA 455 (949)
Q Consensus 378 ~~~~l~~i~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~l~~l-~~l~~~~~-~~~~r~~~~~~l~~~l~~~~~~~~~~~~ 455 (949)
. -..|..++.+|+...+.-+..+...+..+ +.. .+.. ..-|=..-++.|+.+|.. ..+.++..|
T Consensus 131 ~------------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~-~~~~~~~~~l~~l~p~l~~~l~D-~~~~VR~~A 196 (242)
T 2qk2_A 131 L------------EAQQESIVESLSNKNPSVKSETALFIARALTRT-QPTALNKKLLKLLTTSLVKTLNE-PDPTVRDSS 196 (242)
T ss_dssp H------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-CGGGCCHHHHHHHHHHHHHHHTS-SCHHHHHHH
T ss_pred H------------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHhcC-CChHHHHHH
Confidence 1 12455667777766555555555665553 221 1221 222334667888888853 355678788
Q ss_pred HHHHHhcCccc
Q 002234 456 AKTIVSLQGRF 466 (949)
Q Consensus 456 ~~~l~~l~~~~ 466 (949)
.+++..++..+
T Consensus 197 ~~~l~~l~~~v 207 (242)
T 2qk2_A 197 AEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888876654
No 497
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=70.10 E-value=57 Score=39.44 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=65.0
Q ss_pred hHHHHHHHHhccccchhcccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHh
Q 002234 248 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 327 (949)
Q Consensus 248 ~~~lv~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~ 327 (949)
+|.++..+....++...-.-....++...+..+...... .+ -...++.+...+...+...|..|..+|..+
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--------~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--------DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--------GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--------hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 367777765432210000013334555555555332210 11 234567888888888999999988888766
Q ss_pred hhccC-C-chhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhc
Q 002234 328 MQEDG-K-CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL 372 (949)
Q Consensus 328 ~~~~~-~-~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (949)
....+ . ...++. .-++.++..+.......|..|+..|..+...
T Consensus 394 ~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 394 LEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp SSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 54322 1 112221 2456677777777777788888888877664
No 498
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=65.58 E-value=19 Score=37.17 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=43.6
Q ss_pred hhHHHHHHh-hhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCchhhHHHHHhcCCcchhHHHHHHHHhhhc
Q 002234 300 KVFESVISS-LEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL 372 (949)
Q Consensus 300 g~i~~l~~~-l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 372 (949)
..++.|++- +..+...-|..|..+|+.++......... ++.++..+...+.+.|..++.+|..++..
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 445777765 66777777888888888776655432221 23344445667777787788888877553
No 499
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=63.64 E-value=1.1e+02 Score=37.38 Aligned_cols=290 Identities=14% Similarity=0.126 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHhcCChhHHHhhchhhHHhhhhhhhccCCchhHHHHHHHHHHhhccc
Q 002234 120 TITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR 199 (949)
Q Consensus 120 ~~~el~~~i~~l~~s~~l~~~~~a~~~i~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~s~~~~~~~~av~~L~~l~~~ 199 (949)
+...+...++++..++ ..++.++...+..+.....+... ....+++.+...+....+. |.|+.++..|...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~ 82 (986)
T 2iw3_A 12 SIKVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHD-----VPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQ 82 (986)
T ss_dssp HHHHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSS-----CCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCT
T ss_pred hHHHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccc-----cchhHHHHHHHHHhccCCH---HHHHHHHHHHHHh
Confidence 3455555667776655 45567777777776653322111 1123445555555553333 7777877777433
Q ss_pred CccceeeccccCCcHHHHH----HHHhh-C-----hhhHHH----HHHhcCCChHHHHHhhhhHHHHHHHHhccccchhc
Q 002234 200 DKSVIHTLTRVESDVERIV----ALFKK-G-----LLEAVV----LIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKM 265 (949)
Q Consensus 200 ~~~~~~~i~~~~~~i~~l~----~llk~-g-----~~~Aa~----~l~~L~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~ 265 (949)
.. ...+.-+.++ .+|.. | +.+||. +|+..-+.. -. -..+|.|++.+..+.+++
T Consensus 83 ~~-------~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~-~~~~~~~~~~~~~~~kw~--- 149 (986)
T 2iw3_A 83 SN-------LSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI-KALLPHLTNAIVETNKWQ--- 149 (986)
T ss_dssp TT-------CCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH-HHHHHHHHHHHHHCCCHH---
T ss_pred cC-------CCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHhccccchH---
Confidence 22 1122223332 33322 2 333333 333332222 12 445699999998887775
Q ss_pred ccCchhhHHHHHHHHhcCCcccccccchhhhcchhhHHHHHHhhhcccHHHHHHHHHHHHHhhhccCCchhhHhhhcCch
Q 002234 266 CLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELA 345 (949)
Q Consensus 266 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~g~i~~l~~~l~~~~~~~~~~a~~~l~~~~~~~~~~r~~~~~~~~~~ 345 (949)
.+.+|+-+++.|+.... .....-=...||.+-++.-.=..|.+.+|...|..++.. .+|..+.
T Consensus 150 ---~k~~~l~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~--------~~n~d~~ 212 (986)
T 2iw3_A 150 ---EKIAILAAFSAMVDAAK------DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET--------VDNKDIE 212 (986)
T ss_dssp ---HHHHHHHHHHHHHHHSH------HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG--------CCCTTTG
T ss_pred ---HHHHHHHHHHHHHHHhH------HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc--------CCCcchh
Confidence 45667888877753210 011111123457777776666778888888888766442 3345566
Q ss_pred hhHHHHHhc--CCcchhHHHHHHHHhhhccccchhHHHHHHhhccCCchhHHHHH-HHHhhcCCccchhHHHHHHhhhcc
Q 002234 346 PVMESFMAA--SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLL-VYLQTANHDQCPVVAGLLLQLDLL 422 (949)
Q Consensus 346 ~l~~ll~~~--~~~~~~~~~~~l~~l~~~~r~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~~~~~~~~~~a~~l~~l~~l 422 (949)
|++-+|..- ....=-.|+-.|..- +++. ...+-..+.|-+|| ..|...+..++-.+|.+..++--|
T Consensus 213 ~~~~~~~~~~~~p~~~~~~~~~l~~~------tfv~-----~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 213 RFIPSLIQCIADPTEVPETVHLLGAT------TFVA-----EVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp GGHHHHHHHHHCTTHHHHHHHHHTTC------CCCS-----CCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhcChhhhHHHHHHhhcC------eeEe-----eecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 777654431 121111122221111 1110 01111223333333 335555667777888889998777
Q ss_pred cCCCCCCccHHHHHH----HHHHHhhcCCChHHHHHHHHHHHhc
Q 002234 423 AEPRKMSIYREEAID----TLISCLRNSDYPAAQLAAAKTIVSL 462 (949)
Q Consensus 423 ~~~~~~~~~r~~~~~----~l~~~l~~~~~~~~~~~~~~~l~~l 462 (949)
++-.+. -+--+. .|......-.+|++.+.|.+|+-.|
T Consensus 282 v~~~~~---~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 282 VEDPQV---IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp CCCHHH---HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred cCCHHH---HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 654210 001122 2333334445777788887777766
No 500
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=62.44 E-value=1.9e+02 Score=31.95 Aligned_cols=36 Identities=3% Similarity=-0.085 Sum_probs=26.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 002234 710 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 745 (949)
Q Consensus 710 ~~~V~~v~fspdg~~L~Sgs~Dg~I~vWd~~~~~~~ 745 (949)
-..-+.|+|.|+|+++++-...+.|++++..++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~ 61 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK 61 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe
Confidence 345689999999997777554457888887666433
Done!