Query 002235
Match_columns 949
No_of_seqs 292 out of 1366
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1058 Vesicle coat complex C 100.0 2E-212 3E-217 1766.3 75.9 937 1-948 4-945 (948)
2 KOG1078 Vesicle coat complex C 100.0 6.8E-91 1.5E-95 790.3 47.6 805 18-935 23-858 (865)
3 COG5240 SEC21 Vesicle coat com 100.0 1.8E-74 3.9E-79 632.7 40.4 796 18-929 23-885 (898)
4 COG5096 Vesicle coat complex, 100.0 3.2E-74 7E-79 673.9 33.2 727 15-923 16-756 (757)
5 PTZ00429 beta-adaptin; Provisi 100.0 1.2E-69 2.7E-74 650.6 55.0 442 15-481 30-487 (746)
6 PF01602 Adaptin_N: Adaptin N 100.0 2.5E-61 5.4E-66 576.4 44.2 443 18-476 5-461 (526)
7 KOG1062 Vesicle coat complex A 100.0 5.3E-60 1.1E-64 540.0 39.6 431 17-465 32-498 (866)
8 KOG1060 Vesicle coat complex A 100.0 2E-58 4.4E-63 523.1 39.5 442 17-481 35-513 (968)
9 KOG1077 Vesicle coat complex A 100.0 1.3E-50 2.8E-55 454.2 56.6 797 17-942 35-935 (938)
10 KOG1061 Vesicle coat complex A 100.0 1.3E-52 2.8E-57 482.5 35.8 439 16-474 12-465 (734)
11 KOG1059 Vesicle coat complex A 100.0 1.2E-50 2.6E-55 456.8 41.3 438 18-474 37-502 (877)
12 PF14806 Coatomer_b_Cpla: Coat 100.0 3.1E-52 6.7E-57 389.7 9.1 129 814-942 1-129 (129)
13 PF07718 Coatamer_beta_C: Coat 100.0 1.5E-42 3.3E-47 327.3 15.4 139 669-809 1-139 (140)
14 PF08752 COP-gamma_platf: Coat 99.7 1.9E-16 4.1E-21 154.3 11.4 117 709-827 3-151 (151)
15 PF01602 Adaptin_N: Adaptin N 99.5 6.3E-12 1.4E-16 150.7 31.2 414 20-460 45-481 (526)
16 PRK09687 putative lyase; Provi 99.4 9E-12 1.9E-16 136.5 22.9 254 97-420 24-278 (280)
17 PRK13800 putative oxidoreducta 99.3 1.6E-10 3.5E-15 146.3 28.4 270 134-458 624-895 (897)
18 PRK13800 putative oxidoreducta 99.3 2.9E-10 6.2E-15 144.1 28.6 274 97-420 622-895 (897)
19 PTZ00429 beta-adaptin; Provisi 99.2 5.8E-09 1.3E-13 127.3 31.6 368 99-478 35-414 (746)
20 PRK09687 putative lyase; Provi 99.2 1.8E-09 3.8E-14 118.5 24.6 246 62-342 31-279 (280)
21 PLN03200 cellulose synthase-in 99.2 3.8E-07 8.2E-12 119.5 49.3 433 19-466 101-642 (2102)
22 PLN03200 cellulose synthase-in 98.8 7.6E-06 1.6E-10 107.7 36.2 383 28-429 415-865 (2102)
23 KOG0212 Uncharacterized conser 98.8 3.6E-06 7.7E-11 95.9 27.7 352 112-479 64-460 (675)
24 COG5240 SEC21 Vesicle coat com 98.8 5.3E-06 1.1E-10 94.2 28.4 368 88-480 55-477 (898)
25 PF10508 Proteasom_PSMB: Prote 98.6 5E-05 1.1E-09 90.5 33.2 257 126-388 72-367 (503)
26 KOG1078 Vesicle coat complex C 98.6 3.8E-05 8.3E-10 90.7 29.0 55 560-633 484-538 (865)
27 PF10508 Proteasom_PSMB: Prote 98.6 0.00011 2.5E-09 87.5 34.1 253 97-354 78-378 (503)
28 KOG1062 Vesicle coat complex A 98.5 8.8E-05 1.9E-09 88.0 31.3 277 21-309 74-415 (866)
29 KOG2171 Karyopherin (importin) 98.5 0.0013 2.7E-08 81.6 41.8 407 18-476 5-477 (1075)
30 KOG0212 Uncharacterized conser 98.5 0.00039 8.5E-09 79.7 32.9 373 45-429 72-485 (675)
31 KOG2171 Karyopherin (importin) 98.5 0.00062 1.3E-08 84.2 36.3 397 36-445 59-529 (1075)
32 KOG1060 Vesicle coat complex A 98.4 0.00022 4.8E-09 84.3 30.1 280 105-396 44-359 (968)
33 PF12717 Cnd1: non-SMC mitotic 98.4 7.8E-06 1.7E-10 83.9 16.2 89 109-201 1-93 (178)
34 COG5096 Vesicle coat complex, 98.3 3.8E-05 8.3E-10 92.7 22.0 283 93-388 52-367 (757)
35 KOG1059 Vesicle coat complex A 98.3 0.00095 2.1E-08 78.5 31.9 292 98-407 146-462 (877)
36 COG1413 FOG: HEAT repeat [Ener 98.3 0.00025 5.4E-09 80.2 26.1 211 96-356 43-253 (335)
37 KOG2023 Nuclear transport rece 98.3 5.7E-05 1.2E-09 87.6 20.4 313 114-465 376-735 (885)
38 KOG1824 TATA-binding protein-i 98.3 0.0015 3.3E-08 78.8 32.5 364 18-406 735-1152(1233)
39 KOG1058 Vesicle coat complex C 98.2 9.6E-05 2.1E-09 86.9 21.5 365 70-466 41-429 (948)
40 PF12717 Cnd1: non-SMC mitotic 98.2 2E-05 4.3E-10 81.0 13.9 162 292-458 1-175 (178)
41 COG1413 FOG: HEAT repeat [Ener 98.2 0.0019 4E-08 73.1 31.0 258 53-353 43-312 (335)
42 PF13646 HEAT_2: HEAT repeats; 98.2 7.4E-06 1.6E-10 73.3 9.1 85 99-195 2-87 (88)
43 KOG2023 Nuclear transport rece 98.1 0.00032 7E-09 81.6 22.7 308 124-465 83-466 (885)
44 KOG0166 Karyopherin (importin) 98.1 0.0028 6.2E-08 73.7 30.3 299 19-351 68-399 (514)
45 TIGR02270 conserved hypothetic 98.1 0.00058 1.2E-08 78.9 24.3 255 110-422 39-294 (410)
46 KOG1077 Vesicle coat complex A 98.1 0.008 1.7E-07 70.8 32.2 374 66-458 55-470 (938)
47 PF14807 AP4E_app_platf: Adapt 98.0 1.4E-05 3.1E-10 73.5 7.6 93 832-937 1-95 (104)
48 KOG2259 Uncharacterized conser 98.0 0.001 2.2E-08 77.6 23.6 243 236-482 192-496 (823)
49 TIGR02270 conserved hypothetic 98.0 0.0014 3.1E-08 75.6 25.0 239 98-386 56-295 (410)
50 PF04826 Arm_2: Armadillo-like 98.0 0.00051 1.1E-08 74.3 19.5 172 136-308 17-205 (254)
51 PF05804 KAP: Kinesin-associat 98.0 0.0013 2.7E-08 80.4 24.4 205 251-462 421-652 (708)
52 KOG0166 Karyopherin (importin) 97.9 0.0015 3.3E-08 75.9 23.7 236 94-349 83-354 (514)
53 KOG1241 Karyopherin (importin) 97.9 0.1 2.2E-06 62.6 39.3 349 92-458 85-473 (859)
54 KOG0213 Splicing factor 3b, su 97.9 0.034 7.4E-07 65.9 33.0 421 21-481 640-1112(1172)
55 KOG1061 Vesicle coat complex A 97.8 0.0014 2.9E-08 78.4 21.4 399 37-462 64-493 (734)
56 KOG1241 Karyopherin (importin) 97.8 0.0067 1.5E-07 72.2 25.7 380 27-465 227-671 (859)
57 KOG0213 Splicing factor 3b, su 97.7 0.065 1.4E-06 63.7 31.3 396 65-475 452-966 (1172)
58 KOG2259 Uncharacterized conser 97.7 0.022 4.8E-07 66.9 26.7 324 96-440 158-527 (823)
59 KOG4224 Armadillo repeat prote 97.6 0.0041 8.8E-08 68.1 19.2 371 65-461 58-492 (550)
60 KOG1242 Protein containing ada 97.6 0.017 3.6E-07 67.9 25.0 374 44-460 125-521 (569)
61 KOG1824 TATA-binding protein-i 97.6 0.022 4.8E-07 69.3 26.2 316 115-442 805-1151(1233)
62 PF14764 SPG48: AP-5 complex s 97.6 0.052 1.1E-06 62.7 28.5 59 560-628 385-447 (459)
63 PF12348 CLASP_N: CLASP N term 97.4 0.00064 1.4E-08 72.5 9.6 178 18-199 4-205 (228)
64 KOG1242 Protein containing ada 97.3 0.027 5.9E-07 66.2 21.9 362 106-481 27-420 (569)
65 PF13646 HEAT_2: HEAT repeats; 97.2 0.0016 3.6E-08 58.0 9.0 84 134-228 2-86 (88)
66 COG5215 KAP95 Karyopherin (imp 97.2 0.2 4.2E-06 58.3 26.8 337 92-465 55-440 (858)
67 PF05918 API5: Apoptosis inhib 97.1 0.15 3.4E-06 60.6 26.2 277 108-392 34-350 (556)
68 KOG0414 Chromosome condensatio 97.1 0.0034 7.5E-08 77.8 12.8 90 106-198 933-1025(1251)
69 COG5215 KAP95 Karyopherin (imp 97.1 0.46 1E-05 55.4 28.1 377 29-465 233-671 (858)
70 KOG2025 Chromosome condensatio 97.0 1.3 2.9E-05 53.0 33.6 304 18-338 6-321 (892)
71 KOG1020 Sister chromatid cohes 97.0 0.79 1.7E-05 59.1 31.2 346 99-447 819-1279(1692)
72 PF05804 KAP: Kinesin-associat 96.9 0.29 6.3E-06 60.3 26.5 209 53-271 290-520 (708)
73 KOG0567 HEAT repeat-containing 96.8 0.67 1.4E-05 49.6 24.7 253 18-303 4-275 (289)
74 KOG4224 Armadillo repeat prote 96.6 0.24 5.2E-06 54.8 19.9 318 60-388 91-447 (550)
75 cd00020 ARM Armadillo/beta-cat 96.5 0.0082 1.8E-07 56.2 7.8 99 98-199 9-119 (120)
76 COG5181 HSH155 U2 snRNP splice 96.5 0.53 1.2E-05 55.3 23.1 159 315-478 603-774 (975)
77 KOG1240 Protein kinase contain 96.5 0.34 7.5E-06 60.9 22.8 139 278-425 577-726 (1431)
78 COG5181 HSH155 U2 snRNP splice 96.4 1.5 3.2E-05 51.7 26.0 420 22-483 446-919 (975)
79 KOG1240 Protein kinase contain 96.4 0.13 2.8E-06 64.4 18.2 234 22-270 467-724 (1431)
80 PF12348 CLASP_N: CLASP N term 96.4 0.048 1E-06 58.0 13.3 149 245-400 56-219 (228)
81 PF04826 Arm_2: Armadillo-like 96.3 0.075 1.6E-06 57.7 14.6 173 281-458 15-201 (254)
82 PF05918 API5: Apoptosis inhib 96.3 0.43 9.3E-06 56.9 21.5 252 218-480 35-317 (556)
83 KOG1943 Beta-tubulin folding c 96.2 2.8 6.1E-05 52.7 28.0 331 125-461 335-746 (1133)
84 KOG1525 Sister chromatid cohes 96.1 1.9 4.2E-05 56.2 27.7 381 54-443 49-472 (1266)
85 KOG0567 HEAT repeat-containing 96.1 0.92 2E-05 48.6 20.3 269 97-420 4-276 (289)
86 KOG0211 Protein phosphatase 2A 96.0 3.6 7.9E-05 51.2 28.2 345 30-390 289-669 (759)
87 PF13513 HEAT_EZ: HEAT-like re 95.9 0.021 4.5E-07 46.4 6.1 49 110-158 1-55 (55)
88 PF02985 HEAT: HEAT repeat; I 95.9 0.011 2.3E-07 42.2 3.6 29 132-160 1-29 (31)
89 KOG0414 Chromosome condensatio 95.8 6.1 0.00013 50.4 29.0 147 44-198 261-426 (1251)
90 COG5064 SRP1 Karyopherin (impo 95.8 2.8 6.1E-05 46.3 23.0 276 132-424 115-443 (526)
91 KOG1248 Uncharacterized conser 95.7 0.91 2E-05 57.4 21.3 278 42-350 600-903 (1176)
92 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.025 5.4E-07 51.9 5.9 66 125-192 21-89 (97)
93 KOG1020 Sister chromatid cohes 95.6 0.18 3.8E-06 64.7 14.7 129 312-443 812-942 (1692)
94 PF12460 MMS19_C: RNAPII trans 95.5 2.3 5E-05 49.7 23.1 228 69-323 163-409 (415)
95 KOG1248 Uncharacterized conser 95.4 12 0.00026 47.9 31.1 221 217-443 628-880 (1176)
96 KOG1943 Beta-tubulin folding c 95.4 11 0.00025 47.6 28.7 247 48-307 332-610 (1133)
97 smart00638 LPD_N Lipoprotein N 95.4 1.6 3.4E-05 53.4 22.2 254 34-302 290-572 (574)
98 PF01347 Vitellogenin_N: Lipop 95.3 0.52 1.1E-05 58.1 17.9 200 95-303 398-617 (618)
99 COG5064 SRP1 Karyopherin (impo 95.3 0.87 1.9E-05 50.1 16.8 276 20-307 74-397 (526)
100 smart00638 LPD_N Lipoprotein N 95.1 0.36 7.8E-06 59.0 15.6 182 14-203 354-548 (574)
101 COG5218 YCG1 Chromosome conden 95.1 9.9 0.00021 45.0 28.0 241 99-355 94-342 (885)
102 KOG2025 Chromosome condensatio 94.9 7.6 0.00016 47.0 24.5 122 31-156 58-189 (892)
103 PF02296 Alpha_adaptin_C: Alph 94.9 0.082 1.8E-06 50.0 7.2 102 830-939 1-112 (113)
104 KOG0168 Putative ubiquitin fus 94.9 5.6 0.00012 48.9 23.7 100 99-201 170-285 (1051)
105 PF12719 Cnd3: Nuclear condens 94.6 3.4 7.4E-05 46.0 20.5 62 134-198 30-91 (298)
106 KOG0915 Uncharacterized conser 94.6 13 0.00028 48.8 26.8 345 36-390 1016-1430(1702)
107 COG5098 Chromosome condensatio 94.5 4.9 0.00011 48.3 21.4 127 66-198 274-413 (1128)
108 KOG0211 Protein phosphatase 2A 94.5 12 0.00025 46.9 25.9 158 36-199 181-344 (759)
109 cd00020 ARM Armadillo/beta-cat 94.2 0.4 8.7E-06 44.6 10.2 101 243-344 8-119 (120)
110 KOG1991 Nuclear transport rece 94.1 14 0.00031 46.4 25.0 275 141-424 369-711 (1010)
111 COG5098 Chromosome condensatio 93.8 0.88 1.9E-05 54.2 13.6 174 52-235 891-1077(1128)
112 KOG1991 Nuclear transport rece 93.6 27 0.00057 44.1 37.9 426 49-480 32-596 (1010)
113 KOG0915 Uncharacterized conser 93.5 11 0.00024 49.3 23.3 311 132-462 999-1347(1702)
114 PF10363 DUF2435: Protein of u 93.2 0.16 3.4E-06 46.2 5.1 66 99-166 6-76 (92)
115 PF01347 Vitellogenin_N: Lipop 93.1 0.6 1.3E-05 57.5 12.0 182 14-202 392-591 (618)
116 PF12719 Cnd3: Nuclear condens 93.0 2.3 5E-05 47.4 15.4 101 95-197 26-140 (298)
117 PF12755 Vac14_Fab1_bd: Vacuol 93.0 0.6 1.3E-05 42.9 8.7 67 273-341 22-92 (97)
118 PF12830 Nipped-B_C: Sister ch 92.7 1.4 3E-05 45.6 12.1 160 276-485 6-172 (187)
119 KOG1992 Nuclear export recepto 92.7 32 0.0007 42.6 27.3 141 19-160 363-527 (960)
120 PF14631 FancD2: Fanconi anaem 92.6 47 0.001 44.9 28.4 103 240-344 433-541 (1426)
121 PF14500 MMS19_N: Dos2-interac 92.6 12 0.00026 40.9 19.6 136 293-428 96-241 (262)
122 KOG1949 Uncharacterized conser 92.5 5.7 0.00012 47.9 17.6 128 66-197 100-246 (1005)
123 PF13513 HEAT_EZ: HEAT-like re 92.3 0.17 3.7E-06 41.0 3.7 51 145-198 1-55 (55)
124 PF12530 DUF3730: Protein of u 92.0 12 0.00027 40.1 18.7 53 372-424 98-151 (234)
125 KOG2062 26S proteasome regulat 91.5 2.5 5.3E-05 51.1 13.4 205 41-265 472-690 (929)
126 KOG0946 ER-Golgi vesicle-tethe 91.4 4.3 9.3E-05 49.5 15.2 74 370-443 134-219 (970)
127 KOG1525 Sister chromatid cohes 91.2 58 0.0013 43.1 26.2 91 300-397 243-339 (1266)
128 COG5218 YCG1 Chromosome conden 90.9 27 0.00058 41.6 20.4 173 126-342 86-263 (885)
129 PF12460 MMS19_C: RNAPII trans 90.7 39 0.00085 39.5 29.6 192 262-463 171-395 (415)
130 PF13001 Ecm29: Proteasome sta 90.2 49 0.0011 39.8 29.9 146 279-428 273-447 (501)
131 KOG2213 Apoptosis inhibitor 5/ 89.8 41 0.00089 38.3 20.3 312 144-460 37-401 (460)
132 KOG4413 26S proteasome regulat 89.8 37 0.0008 37.7 24.1 306 36-346 65-440 (524)
133 KOG0413 Uncharacterized conser 89.7 18 0.0004 45.2 18.5 91 109-202 944-1037(1529)
134 KOG0413 Uncharacterized conser 89.5 16 0.00034 45.7 17.8 203 131-346 472-686 (1529)
135 PF09066 B2-adapt-app_C: Beta2 89.4 0.49 1.1E-05 44.7 4.5 102 831-939 2-107 (114)
136 KOG4653 Uncharacterized conser 89.3 20 0.00042 44.6 18.4 64 97-160 728-797 (982)
137 PF08506 Cse1: Cse1; InterPro 89.1 1.1 2.3E-05 51.6 7.8 136 20-155 212-370 (370)
138 KOG1243 Protein kinase [Genera 89.0 2.8 6E-05 50.7 11.2 108 275-386 327-436 (690)
139 PF14664 RICTOR_N: Rapamycin-i 88.4 35 0.00075 39.4 19.3 167 155-350 7-181 (371)
140 KOG1222 Kinesin associated pro 88.3 58 0.0013 38.0 21.8 287 133-462 347-666 (791)
141 cd00256 VATPase_H VATPase_H, r 88.3 27 0.00058 40.9 18.4 287 50-344 53-424 (429)
142 PF14500 MMS19_N: Dos2-interac 87.8 37 0.0008 37.2 18.3 130 329-462 95-241 (262)
143 KOG0168 Putative ubiquitin fus 87.8 10 0.00023 46.7 14.8 158 206-364 168-347 (1051)
144 PF11698 V-ATPase_H_C: V-ATPas 87.5 1.4 3E-05 41.9 6.1 66 279-344 44-114 (119)
145 KOG1949 Uncharacterized conser 87.2 37 0.00081 41.3 18.5 177 19-206 147-337 (1005)
146 PF12530 DUF3730: Protein of u 86.8 38 0.00083 36.3 17.6 51 295-345 100-151 (234)
147 PF13251 DUF4042: Domain of un 86.8 29 0.00063 35.8 15.7 147 147-310 2-176 (182)
148 PF03224 V-ATPase_H_N: V-ATPas 86.7 13 0.00028 41.7 14.5 143 319-465 108-272 (312)
149 KOG2062 26S proteasome regulat 86.4 93 0.002 38.4 23.2 149 279-443 519-676 (929)
150 PF10363 DUF2435: Protein of u 86.1 3.7 7.9E-05 37.4 7.8 26 323-348 10-35 (92)
151 KOG1820 Microtubule-associated 86.0 21 0.00046 45.0 16.8 189 125-318 247-454 (815)
152 KOG2274 Predicted importin 9 [ 85.7 1.1E+02 0.0024 38.6 27.9 301 95-408 448-798 (1005)
153 PF12830 Nipped-B_C: Sister ch 85.5 0.93 2E-05 46.9 4.2 69 99-169 11-81 (187)
154 KOG1293 Proteins containing ar 84.8 30 0.00065 41.8 16.4 115 240-354 417-544 (678)
155 KOG2160 Armadillo/beta-catenin 84.8 12 0.00026 42.0 12.6 98 139-239 132-245 (342)
156 cd00256 VATPase_H VATPase_H, r 84.5 91 0.002 36.6 20.5 250 217-473 113-394 (429)
157 KOG2081 Nuclear transport regu 84.5 98 0.0021 37.0 25.6 100 372-473 366-468 (559)
158 PF08713 DNA_alkylation: DNA a 84.3 34 0.00074 35.7 15.6 199 119-337 4-210 (213)
159 KOG2956 CLIP-associating prote 84.3 39 0.00085 39.4 16.4 153 293-457 301-472 (516)
160 KOG2160 Armadillo/beta-catenin 84.1 15 0.00033 41.3 12.9 105 245-349 127-244 (342)
161 KOG4653 Uncharacterized conser 83.7 14 0.00031 45.7 13.4 73 96-169 847-926 (982)
162 KOG1293 Proteins containing ar 83.4 13 0.00027 44.9 12.5 145 63-213 386-548 (678)
163 PF06685 DUF1186: Protein of u 82.6 19 0.00042 38.9 12.7 99 165-270 30-141 (249)
164 PF03224 V-ATPase_H_N: V-ATPas 82.6 24 0.00051 39.6 14.3 116 186-308 55-179 (312)
165 COG5116 RPN2 26S proteasome re 82.2 25 0.00054 41.7 13.9 149 279-443 516-673 (926)
166 KOG0946 ER-Golgi vesicle-tethe 82.0 1.5E+02 0.0032 37.1 23.8 211 141-354 33-305 (970)
167 COG5116 RPN2 26S proteasome re 81.9 7.7 0.00017 45.7 9.8 177 18-213 482-669 (926)
168 PF11838 ERAP1_C: ERAP1-like C 81.8 85 0.0018 34.9 18.5 101 328-444 167-267 (324)
169 KOG2933 Uncharacterized conser 81.2 4.2 9.1E-05 44.7 7.1 139 18-160 89-234 (334)
170 KOG1820 Microtubule-associated 80.6 41 0.0009 42.5 16.3 176 21-199 257-442 (815)
171 KOG0891 DNA-dependent protein 79.8 41 0.00089 47.2 17.0 265 113-389 461-765 (2341)
172 PF08167 RIX1: rRNA processing 79.5 11 0.00024 38.1 9.3 42 279-323 117-158 (165)
173 KOG2759 Vacuolar H+-ATPase V1 78.9 1.3E+02 0.0029 34.8 18.1 66 279-344 367-437 (442)
174 KOG2956 CLIP-associating prote 78.1 26 0.00056 40.8 12.3 136 129-269 327-475 (516)
175 KOG1967 DNA repair/transcripti 77.8 14 0.0003 46.2 10.6 97 242-339 909-1018(1030)
176 KOG2005 26S proteasome regulat 77.5 30 0.00065 41.9 12.9 180 43-235 554-744 (878)
177 KOG4199 Uncharacterized conser 76.8 1.4E+02 0.003 33.7 24.0 304 97-432 78-411 (461)
178 KOG2933 Uncharacterized conser 75.7 14 0.0003 40.8 9.0 84 70-160 69-158 (334)
179 PF01603 B56: Protein phosphat 75.6 1.7E+02 0.0037 34.2 23.1 114 339-455 281-401 (409)
180 PF02985 HEAT: HEAT repeat; I 74.5 3.2 6.9E-05 29.4 2.6 27 98-124 2-28 (31)
181 KOG2274 Predicted importin 9 [ 74.1 2.6E+02 0.0055 35.6 21.7 193 245-441 452-664 (1005)
182 PF10633 NPCBM_assoc: NPCBM-as 73.4 9.4 0.0002 33.3 6.0 63 738-800 4-68 (78)
183 PF08713 DNA_alkylation: DNA a 73.1 4.8 0.00011 42.1 4.8 150 58-225 55-209 (213)
184 KOG2137 Protein kinase [Signal 72.6 2.5E+02 0.0054 34.8 20.0 272 130-424 239-539 (700)
185 PF14664 RICTOR_N: Rapamycin-i 72.3 41 0.00088 38.8 12.4 140 286-431 33-182 (371)
186 PF11864 DUF3384: Domain of un 71.6 2.2E+02 0.0048 33.8 26.9 289 112-423 6-329 (464)
187 PF13001 Ecm29: Proteasome sta 71.5 1.2E+02 0.0025 36.6 16.5 162 182-344 248-442 (501)
188 cd03561 VHS VHS domain family; 71.2 38 0.00082 32.9 10.2 86 254-343 16-110 (133)
189 KOG2137 Protein kinase [Signal 70.6 2.2E+02 0.0048 35.2 18.1 157 183-342 251-415 (700)
190 PF12074 DUF3554: Domain of un 70.4 1.3E+02 0.0028 34.1 15.9 53 108-160 35-90 (339)
191 PF12765 Cohesin_HEAT: HEAT re 70.2 4.4 9.6E-05 31.1 2.7 24 131-154 18-41 (42)
192 PF12074 DUF3554: Domain of un 69.9 2E+02 0.0043 32.6 21.8 85 112-199 3-89 (339)
193 PF05004 IFRD: Interferon-rela 69.2 2E+02 0.0043 32.3 19.9 47 293-339 200-251 (309)
194 cd03569 VHS_Hrs_Vps27p VHS dom 68.8 1.2E+02 0.0027 29.8 13.5 84 255-342 21-111 (142)
195 PF08167 RIX1: rRNA processing 67.6 30 0.00066 34.9 9.0 72 125-198 19-95 (165)
196 KOG4535 HEAT and armadillo rep 66.7 24 0.00051 41.1 8.5 122 67-199 25-178 (728)
197 PF01603 B56: Protein phosphat 66.2 2.7E+02 0.0058 32.6 18.4 117 130-249 132-262 (409)
198 KOG2973 Uncharacterized conser 66.1 2.2E+02 0.0049 31.7 20.0 60 99-160 6-71 (353)
199 PF08569 Mo25: Mo25-like; Int 65.8 2.4E+02 0.0053 32.0 18.8 70 132-203 77-155 (335)
200 PF14225 MOR2-PAG1_C: Cell mor 65.2 2.2E+02 0.0047 31.2 20.8 86 330-425 130-218 (262)
201 KOG2153 Protein involved in th 65.0 3.3E+02 0.0072 33.3 25.9 323 116-481 195-553 (704)
202 PF03130 HEAT_PBS: PBS lyase H 64.7 11 0.00023 25.9 3.4 26 112-137 1-26 (27)
203 PF08569 Mo25: Mo25-like; Int 64.5 2.6E+02 0.0056 31.9 22.9 115 289-439 174-297 (335)
204 PF00514 Arm: Armadillo/beta-c 64.0 11 0.00025 28.3 3.9 28 132-159 13-40 (41)
205 KOG1243 Protein kinase [Genera 63.2 16 0.00036 44.3 6.9 98 103-202 337-439 (690)
206 KOG2759 Vacuolar H+-ATPase V1 63.1 2.9E+02 0.0064 32.1 22.1 323 107-473 61-407 (442)
207 PF11701 UNC45-central: Myosin 63.0 33 0.00072 34.4 8.2 123 142-268 16-156 (157)
208 cd03567 VHS_GGA VHS domain fam 62.9 87 0.0019 30.8 10.8 89 252-344 15-115 (139)
209 KOG2038 CAATT-binding transcri 62.5 4E+02 0.0086 33.4 21.6 92 330-424 492-583 (988)
210 COG1470 Predicted membrane pro 62.1 18 0.00038 42.1 6.5 63 738-800 396-460 (513)
211 cd06561 AlkD_like A new struct 61.8 78 0.0017 32.4 11.1 73 134-210 108-183 (197)
212 PF02883 Alpha_adaptinC2: Adap 61.7 1.4E+02 0.003 27.8 11.8 59 735-793 20-79 (115)
213 KOG1822 Uncharacterized conser 61.6 6.1E+02 0.013 35.2 24.3 226 90-319 868-1138(2067)
214 cd03565 VHS_Tom1 VHS domain fa 61.1 1.7E+02 0.0037 28.7 12.7 88 252-342 15-112 (141)
215 KOG4535 HEAT and armadillo rep 60.9 64 0.0014 37.8 10.6 155 141-310 6-181 (728)
216 KOG1517 Guanine nucleotide bin 60.9 44 0.00096 42.5 10.0 133 53-198 512-669 (1387)
217 cd03568 VHS_STAM VHS domain fa 60.7 74 0.0016 31.5 10.0 86 254-343 16-108 (144)
218 PF12765 Cohesin_HEAT: HEAT re 59.7 6.9 0.00015 30.0 2.0 39 302-340 2-42 (42)
219 cd06561 AlkD_like A new struct 59.1 11 0.00023 39.0 4.0 68 100-169 109-177 (197)
220 COG5231 VMA13 Vacuolar H+-ATPa 58.6 2.5E+02 0.0055 31.5 14.1 67 279-345 357-428 (432)
221 PLN03076 ARF guanine nucleotid 57.3 7.3E+02 0.016 34.8 25.7 45 116-160 1120-1166(1780)
222 KOG2229 Protein required for a 55.9 4.2E+02 0.0092 31.6 26.2 317 19-392 18-349 (616)
223 KOG1517 Guanine nucleotide bin 54.9 2.3E+02 0.0049 36.7 14.5 56 110-167 484-546 (1387)
224 PF00927 Transglut_C: Transglu 54.9 34 0.00074 31.6 6.3 57 737-793 13-76 (107)
225 PF10274 ParcG: Parkin co-regu 54.2 37 0.0008 35.0 6.8 48 127-175 76-126 (183)
226 KOG2005 26S proteasome regulat 54.0 5.1E+02 0.011 32.0 21.3 276 99-386 418-742 (878)
227 PF06280 DUF1034: Fn3-like dom 53.3 1.2E+02 0.0027 28.2 9.9 75 738-812 7-103 (112)
228 PF12744 ATG19_autophagy: Auto 51.6 17 0.00036 38.8 3.9 56 734-789 86-142 (236)
229 PF11865 DUF3385: Domain of un 50.7 66 0.0014 32.4 8.0 22 143-166 23-44 (160)
230 KOG4337 Microsomal triglycerid 50.6 5.7E+02 0.012 31.5 20.4 95 282-390 497-597 (896)
231 smart00809 Alpha_adaptinC2 Ada 50.0 1.7E+02 0.0036 26.6 10.1 56 737-794 16-72 (104)
232 PF11935 DUF3453: Domain of un 49.2 1.1E+02 0.0024 32.9 9.9 136 139-286 1-161 (239)
233 KOG4413 26S proteasome regulat 49.0 4.4E+02 0.0094 29.7 21.0 226 125-353 76-341 (524)
234 PF08506 Cse1: Cse1; InterPro 47.6 1.4E+02 0.003 34.4 11.0 16 109-124 155-170 (370)
235 PF13251 DUF4042: Domain of un 47.0 3.4E+02 0.0075 28.0 12.9 22 325-346 49-70 (182)
236 PF11935 DUF3453: Domain of un 47.0 2.3E+02 0.0051 30.4 12.0 49 393-441 112-162 (239)
237 KOG2038 CAATT-binding transcri 47.0 6.9E+02 0.015 31.5 24.3 126 64-199 280-408 (988)
238 KOG1993 Nuclear transport rece 46.2 7.2E+02 0.016 31.5 23.0 176 215-407 625-814 (978)
239 PF10274 ParcG: Parkin co-regu 46.0 55 0.0012 33.7 6.5 90 50-140 35-126 (183)
240 COG5110 RPN1 26S proteasome re 45.9 2.3E+02 0.005 33.9 12.0 92 114-213 627-718 (881)
241 PF14676 FANCI_S2: FANCI solen 44.6 1.1E+02 0.0025 30.7 8.5 111 335-453 37-152 (158)
242 PF09090 MIF4G_like_2: MIF4G l 43.4 1.7E+02 0.0036 31.8 10.3 104 373-480 51-158 (253)
243 PF12612 TFCD_C: Tubulin foldi 43.1 2.6E+02 0.0056 28.9 11.3 36 125-160 1-36 (193)
244 PF11698 V-ATPase_H_C: V-ATPas 42.8 85 0.0018 30.1 6.8 25 283-308 91-115 (119)
245 cd03572 ENTH_epsin_related ENT 42.6 71 0.0015 30.7 6.3 48 301-348 23-70 (122)
246 PF09759 Atx10homo_assoc: Spin 42.0 58 0.0013 30.3 5.5 58 374-431 2-66 (102)
247 smart00567 EZ_HEAT E-Z type HE 41.8 30 0.00065 24.0 2.8 24 111-134 2-25 (30)
248 KOG0392 SNF2 family DNA-depend 41.4 9.1E+02 0.02 32.3 17.0 98 242-341 816-921 (1549)
249 KOG2011 Sister chromatid cohes 41.3 2.5E+02 0.0054 36.6 12.4 128 289-423 297-434 (1048)
250 KOG2374 Uncharacterized conser 40.9 75 0.0016 37.1 7.1 72 371-442 20-91 (661)
251 KOG2213 Apoptosis inhibitor 5/ 40.6 6.4E+02 0.014 29.2 17.0 55 307-361 52-106 (460)
252 PF11865 DUF3385: Domain of un 40.1 3.7E+02 0.0081 26.9 11.5 30 242-271 10-40 (160)
253 PF00514 Arm: Armadillo/beta-c 39.7 38 0.00083 25.3 3.3 28 243-270 13-40 (41)
254 cd08050 TAF6 TATA Binding Prot 39.3 3.2E+02 0.007 31.1 12.2 143 317-462 179-340 (343)
255 KOG2149 Uncharacterized conser 39.2 2.2E+02 0.0047 32.9 10.4 100 289-392 68-175 (393)
256 PF00790 VHS: VHS domain; Int 38.8 1.8E+02 0.0038 28.5 8.7 65 277-342 41-115 (140)
257 PF08623 TIP120: TATA-binding 38.3 53 0.0012 33.4 5.0 20 371-390 131-150 (169)
258 cd00197 VHS_ENTH_ANTH VHS, ENT 38.3 2.3E+02 0.005 26.4 9.2 17 327-343 97-113 (115)
259 PF08389 Xpo1: Exportin 1-like 38.1 3.3E+02 0.0071 26.0 10.7 51 145-198 2-52 (148)
260 cd03569 VHS_Hrs_Vps27p VHS dom 38.0 3.3E+02 0.0071 26.8 10.5 29 241-269 83-112 (142)
261 PF14676 FANCI_S2: FANCI solen 37.9 2.3E+02 0.0051 28.5 9.5 60 207-266 97-156 (158)
262 PF14796 AP3B1_C: Clathrin-ada 37.4 72 0.0016 31.6 5.6 55 737-791 83-138 (145)
263 KOG2032 Uncharacterized conser 37.4 7.9E+02 0.017 29.4 22.0 244 205-458 258-527 (533)
264 smart00185 ARM Armadillo/beta- 37.0 49 0.0011 24.1 3.6 28 132-159 13-40 (41)
265 PF05327 RRN3: RNA polymerase 35.7 5.7E+02 0.012 31.3 14.3 116 342-465 65-199 (563)
266 cd03572 ENTH_epsin_related ENT 35.5 38 0.00083 32.5 3.3 43 125-169 32-74 (122)
267 PF06685 DUF1186: Protein of u 35.2 1.5E+02 0.0032 32.3 8.1 76 135-213 115-196 (249)
268 cd08050 TAF6 TATA Binding Prot 35.0 4.1E+02 0.0089 30.3 12.1 74 126-201 253-341 (343)
269 PF10165 Ric8: Guanine nucleot 34.9 8.3E+02 0.018 28.9 17.4 84 217-308 15-108 (446)
270 KOG2021 Nuclear mRNA export fa 34.9 9.7E+02 0.021 30.2 15.2 106 254-362 17-139 (980)
271 PRK14015 pepN aminopeptidase N 33.7 9.4E+02 0.02 31.2 16.2 230 17-254 551-859 (875)
272 COG5101 CRM1 Importin beta-rel 33.0 1E+03 0.022 29.4 17.0 178 254-444 26-224 (1053)
273 KOG1993 Nuclear transport rece 32.0 1.2E+03 0.025 29.7 18.0 84 239-322 523-615 (978)
274 PF11614 FixG_C: IG-like fold 31.0 1.4E+02 0.003 28.1 6.4 53 742-795 34-86 (118)
275 cd03561 VHS VHS domain family; 30.7 3.3E+02 0.0072 26.3 9.1 16 182-197 48-63 (133)
276 KOG1048 Neural adherens juncti 30.4 1.2E+03 0.026 29.3 18.4 66 395-460 566-639 (717)
277 PF04118 Dopey_N: Dopey, N-ter 30.3 8.2E+02 0.018 27.4 18.3 165 290-462 108-301 (307)
278 KOG1967 DNA repair/transcripti 30.2 1.3E+03 0.028 29.8 20.8 32 129-160 41-72 (1030)
279 cd03567 VHS_GGA VHS domain fam 29.7 4.7E+02 0.01 25.7 9.9 50 148-200 18-67 (139)
280 cd03565 VHS_Tom1 VHS domain fa 29.7 4.8E+02 0.01 25.6 10.1 15 183-197 51-65 (141)
281 PF03130 HEAT_PBS: PBS lyase H 29.6 88 0.0019 21.4 3.5 12 147-158 1-12 (27)
282 cd07064 AlkD_like_1 A new stru 29.4 6.8E+02 0.015 26.2 12.7 129 93-229 61-208 (208)
283 PF07705 CARDB: CARDB; InterP 29.1 2.7E+02 0.0059 24.5 7.9 61 736-800 16-76 (101)
284 KOG4500 Rho/Rac GTPase guanine 29.0 1E+03 0.022 28.1 16.5 212 52-269 222-473 (604)
285 KOG0891 DNA-dependent protein 28.2 1.1E+03 0.025 33.9 16.3 90 287-387 489-594 (2341)
286 KOG2011 Sister chromatid cohes 27.8 1.5E+03 0.033 29.8 16.1 134 216-351 298-441 (1048)
287 PF12031 DUF3518: Domain of un 27.7 1.3E+02 0.0028 32.4 5.9 72 333-406 141-227 (257)
288 PF08568 Kinetochor_Ybp2: Unch 27.5 5.1E+02 0.011 32.2 12.2 31 378-408 147-178 (633)
289 KOG2140 Uncharacterized conser 27.4 4.7E+02 0.01 31.4 10.6 123 329-456 160-299 (739)
290 smart00288 VHS Domain present 26.6 4.7E+02 0.01 25.3 9.3 64 278-342 37-108 (133)
291 PF04379 DUF525: Protein of un 26.6 4.9E+02 0.011 23.6 8.8 69 735-808 12-87 (90)
292 PF06030 DUF916: Bacterial pro 26.5 82 0.0018 30.2 3.9 39 770-808 80-119 (121)
293 PLN03076 ARF guanine nucleotid 26.3 9.7E+02 0.021 33.7 15.0 93 253-345 1148-1253(1780)
294 PF02847 MA3: MA3 domain; Int 26.0 4.6E+02 0.0099 24.1 9.0 23 334-356 3-25 (113)
295 PF09450 DUF2019: Domain of un 24.7 37 0.0008 31.7 1.1 24 136-159 52-75 (106)
296 KOG2549 Transcription initiati 24.7 3.2E+02 0.007 32.8 8.9 73 127-201 284-371 (576)
297 KOG3723 PH domain protein Melt 24.6 2.7E+02 0.0058 33.5 8.1 104 378-483 182-285 (851)
298 PF09890 DUF2117: Uncharacteri 24.6 1.1E+02 0.0025 32.2 4.8 91 795-909 12-108 (215)
299 PF08631 SPO22: Meiosis protei 24.3 9.5E+02 0.021 26.2 20.5 175 294-478 81-273 (278)
300 PF08767 CRM1_C: CRM1 C termin 24.2 1E+03 0.023 26.6 22.0 72 274-345 113-194 (319)
301 PF04078 Rcd1: Cell differenti 23.9 8.6E+02 0.019 26.6 11.4 28 102-131 3-32 (262)
302 smart00185 ARM Armadillo/beta- 23.8 1E+02 0.0023 22.3 3.4 28 243-270 13-40 (41)
303 KOG2122 Beta-catenin-binding p 23.8 1.6E+03 0.035 30.8 15.2 126 186-312 453-605 (2195)
304 PF02854 MIF4G: MIF4G domain; 23.7 7.5E+02 0.016 24.8 12.8 60 335-401 2-61 (209)
305 PF04858 TH1: TH1 protein; In 23.6 1.4E+03 0.031 28.0 25.6 129 309-442 323-473 (584)
306 KOG0392 SNF2 family DNA-depend 23.6 6.6E+02 0.014 33.5 11.7 95 317-430 149-243 (1549)
307 COG5231 VMA13 Vacuolar H+-ATPa 23.5 1.1E+03 0.024 26.7 12.1 215 242-469 149-393 (432)
308 COG5095 TAF6 Transcription ini 23.4 2.6E+02 0.0056 31.0 7.2 73 127-201 273-360 (450)
309 KOG1848 Uncharacterized conser 23.1 2E+03 0.044 29.6 18.5 58 140-199 851-914 (1610)
310 smart00544 MA3 Domain in DAP-5 22.9 6E+02 0.013 23.3 9.7 36 373-408 32-67 (113)
311 PF04499 SAPS: SIT4 phosphatas 22.8 8.3E+02 0.018 29.2 12.2 34 393-426 116-150 (475)
312 PF05004 IFRD: Interferon-rela 22.6 1.1E+03 0.024 26.3 19.4 168 284-454 49-249 (309)
313 PF12397 U3snoRNP10: U3 small 22.5 5.8E+02 0.013 23.9 9.0 62 284-347 12-76 (121)
314 PF09324 DUF1981: Domain of un 22.4 2.1E+02 0.0046 25.5 5.5 63 278-340 17-83 (86)
315 PF06159 DUF974: Protein of un 22.1 8.9E+02 0.019 26.2 11.4 79 714-795 103-209 (249)
316 PF05536 Neurochondrin: Neuroc 22.1 1.5E+03 0.032 27.6 18.0 205 244-458 7-257 (543)
317 PF11707 Npa1: Ribosome 60S bi 21.7 1.2E+03 0.025 26.3 13.9 147 274-443 23-184 (330)
318 PF12333 Ipi1_N: Rix1 complex 21.1 1.7E+02 0.0037 27.0 4.9 50 128-179 8-59 (102)
319 PF04388 Hamartin: Hamartin pr 21.1 8.4E+02 0.018 30.6 12.2 152 315-481 3-160 (668)
320 PF14225 MOR2-PAG1_C: Cell mor 21.1 1.1E+03 0.024 25.8 19.9 219 74-307 6-253 (262)
321 PF12231 Rif1_N: Rap1-interact 21.0 1.3E+03 0.028 26.5 26.7 103 64-168 3-126 (372)
322 KOG2256 Predicted protein invo 20.7 1.7E+03 0.036 27.7 22.2 76 53-140 193-270 (661)
323 PF12231 Rif1_N: Rap1-interact 20.1 1.3E+03 0.029 26.4 22.5 53 291-343 146-202 (372)
No 1
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-212 Score=1766.33 Aligned_cols=937 Identities=59% Similarity=0.937 Sum_probs=881.8
Q ss_pred CCCceEEEEecCCCCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHH
Q 002235 1 MEKSCTLLIHFDKGTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEI 80 (949)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~ 80 (949)
|+..|++|++.+..++++..||++.|++++++.|+++|||+|++|++|+++|.++|+||||++|++||++|||.|+||+.
T Consensus 4 ~~~~~~~~~~~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~ 83 (948)
T KOG1058|consen 4 MEMVCYTLLNSPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWEL 83 (948)
T ss_pred cccceeeeecCCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHH
Confidence 35689999998778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 81 IDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 81 ~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
++|+++||++++||||+||++|||||||||||||.+|||||++++||++++++|.|++||+|||+||||+|++|++.||+
T Consensus 84 vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk 163 (948)
T KOG1058|consen 84 VPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYK 163 (948)
T ss_pred ccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhH
Q 002235 161 LPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK 240 (949)
Q Consensus 161 l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~ 240 (949)
.+.+++||+|++++.+|..|+||+|++|||.+|.+++|++|++||..++.+++.+++.+|..|++++++.|..+|.++
T Consensus 164 --~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 164 --NFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred --hhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~ 320 (949)
.++++++..+|++++++|+||||.++..++++|+++++++.++++++.+.+|+|+|.++|++|..+...|..+++++.+|
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mD 321 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMD 321 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHH
Q 002235 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL 400 (949)
Q Consensus 321 il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L 400 (949)
++++|+.+|.++|+++|++.+++++.+|++++++.|+||+.++.+.+.|++.+||+.++++||.|+.+||+.+..++..|
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~l 401 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLL 401 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766678899999999999999999999999999999
Q ss_pred HHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHhCC
Q 002235 401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE 480 (949)
Q Consensus 401 ~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~ 480 (949)
++++.+.++..+..++.|+++.++++|++|..++++|.+.++.++.+++.++++|++|||+....++..+|..|++.+|+
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGE 481 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGE 481 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCccCCCCcchhhhhhccccccccCCCceecCCCceeeccccccccCCCCccccCCcCC-hhhHHhhhcCCchhH
Q 002235 481 LPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTS-GNLRSLLLTGDFFLG 559 (949)
Q Consensus 481 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~dgty~t~~a~~~~~~~~~~~~~~~~~~-~~lr~~~~~gd~~l~ 559 (949)
+|++.+|.+...++.+++.+++..+.| ..++|+|++|||||||+|+++.++ + .+.++ |+||+++++||||+|
T Consensus 482 vp~~~sei~~~~~~~~~e~~~~~~s~~-~~~~~~v~~dGTYAteSA~s~~~~--~----~~~~~rp~lrr~ll~Gdfflg 554 (948)
T KOG1058|consen 482 VPIVCSEIERLHGEQTKEIELTSSSAP-SSTKPKVLADGTYATESAFSSSSP--T----VKEADRPSLRRFLLTGDFFLG 554 (948)
T ss_pred cceehHHHhhhhccccccccccccccc-ccCCCeeecCccchhhhhhccccc--c----hhhccchHHHHHhhcchHHHH
Confidence 999998865554443333333332222 247899999999999999975322 1 12233 999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHhccCChhHHHHHHhh
Q 002235 560 AVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQS 639 (949)
Q Consensus 560 ~~l~~~l~kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~~~~~id~d~~~r~~~~l~~l~~~~~~~~~~~~~~ 639 (949)
+++|++|+||++|+.+...+.++.|+++++||+||.+|||+|+|++++++||+|+.+||+.|+|+|.+..+....+|+++
T Consensus 555 A~la~tLtKl~lr~~~l~~~k~~~N~~~aea~lIM~sii~lGkS~~~~~~Id~Ds~erI~~cIr~L~~~~p~~~~~f~~~ 634 (948)
T KOG1058|consen 555 AVLAITLTKLVLRFEELEGPKTRQNALKAEALLIMVSIIHLGKSSFVSKTIDNDSLERIMLCIRILVSRNPEMNSQFLDD 634 (948)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHHHHHHhccccCCCCCcCcchHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccCCCcccchhhhhhHHHhhhcCccccc--cchhhhhc
Q 002235 640 CRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEG--DDANKLNR 717 (949)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~f~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~l~~ 717 (949)
||++|+.|++...+++.++..++.+....||||||+|+|+.+..+ ..-.++.+++++.+|+|.....+ ..++||++
T Consensus 635 cr~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ddpI~f~q~~~~~s--~~~~en~fe~~L~~A~g~~~~~~~~s~~sKL~k 712 (948)
T KOG1058|consen 635 CRQSFEKMIDAKKKRRKEELLKKSQKTTAQPDDPINFRQLRSGRS--DERGENQFEEDLVQATGDAQKAEDGSPASKLNK 712 (948)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccccCCCCCccchHhhcccch--hhhhhhHHHHHHHHHhccccccccCCcHHHhhc
Confidence 999999999998877776655666666789999999999985332 11247788999999999654433 44699999
Q ss_pred cccccCCCCcEEEEEEEEEecceeEEEEEEEecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEecCC
Q 002235 718 ILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTE 797 (949)
Q Consensus 718 i~qltg~~dp~Y~ea~v~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~e 797 (949)
|+|||||||||||||||+|+|||||||++++|||++||||+++||+|+||||++|+|+|++|+||++.+++++|||+|||
T Consensus 713 V~QLtGfSDPVYaEAyv~vnqyDIVLDvL~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsSte 792 (948)
T KOG1058|consen 713 VTQLTGFSDPVYAEAYVTVNQYDIVLDVLLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTE 792 (948)
T ss_pred eeeccCCCCCeeeEEEeeeeeeeEEEEEEEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeEEEecCC-ccccceEEecceeeccccccccccCChhhhHHhhcccCcCcEEEeeccCCCHHHHHHHHHHHcCC
Q 002235 798 TGVIFGNIVYETSN-VLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNM 876 (949)
Q Consensus 798 ~g~ifg~i~y~~~~-~~~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efewEnk~~v~~~~~~l~~~l~~li~~tnm 876 (949)
||+|||||+|+++. +.+++||+||||||||||||+|++|++++||+||.+|||||||+|++++++|+||++|++|+|||
T Consensus 793 nGvIfGnIvY~~~~~a~~~~~VvLndIhidImDYI~Pa~~~d~~FRtmW~efEWENKvtv~t~~~~L~e~l~~i~kstNm 872 (948)
T KOG1058|consen 793 NGVIFGNIVYDTSEAANDRNVVVLNDIHIDIMDYIKPAKCDDDEFRTMWAEFEWENKVTVNTTIKTLREFLGHISKSTNM 872 (948)
T ss_pred CcEEEEEEEecCccccccceEEEeccccccHHHhcCCCcCChHHHHHHHHHhhhcceeeeccccccHHHHHHHHHhhcCC
Confidence 99999999999964 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccCCCchHHHHHhhcccccCceEEEEEEEEEecC-CceEEEEEEeeCChhHHHhhhhhhhhhhccC
Q 002235 877 KCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTD-GKLSGYIRIRSKTQGIALSLGDKITLKQKGG 948 (949)
Q Consensus 877 ~~l~~~~~~~~~~~~~~~nL~~~s~~ge~al~n~s~~~~~~-~~v~g~~riRs~~q~ia~slg~~i~~~~~~~ 948 (949)
.||||+.+++|+|||++|||||+|+||||||||||+||+.+ |.|+||+|||||+||||+||||||+++||+.
T Consensus 873 kcLtpe~al~g~CgFlaaNlya~SifgedALaNvsieK~~~~~~v~g~iRIRsK~QGialSLgdkv~~~~k~~ 945 (948)
T KOG1058|consen 873 KCLTPEAALDGDCGFLAANLYAKSIFGEDALANVSIEKSSDGGPVSGHIRIRSKTQGIALSLGDKVGLVQKSL 945 (948)
T ss_pred cccCchhhccCccchhhhhHHHHhhccchhheeeeeeccCCCCCceEEEEEEecccceeeeHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999655 5899999999999999999999999999863
No 2
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-91 Score=790.35 Aligned_cols=805 Identities=17% Similarity=0.246 Sum_probs=658.0
Q ss_pred cHHHHHHHhcCCChHHHH-HHHHHHHHHHhCCCCCC-----chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCC
Q 002235 18 IANEIKEALEGNDVPAKV-DAMKKAIMLLLNGETLP-----QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~-~aL~kli~l~~~G~d~s-----~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~ 91 (949)
=+||.|.+.++|-.++|| ..|.||+|++.+|+.++ .+||.++| +|||+|..+||++|+.++.++...
T Consensus 23 vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tK-lfQskd~~LRr~vYl~Ikels~is------ 95 (865)
T KOG1078|consen 23 VLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITK-LFQSKDVSLRRMVYLAIKELSKIS------ 95 (865)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH-HHhhcCHHHHHHHHHHHhhccccc------
Confidence 468999888999888888 99999999999999885 79999999 899999999999999999998776
Q ss_pred chHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch
Q 002235 92 PEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (949)
Q Consensus 92 ~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~ 171 (949)
+|.++++|+++||++..++.+|+.|||+||+|.+..+++.+.+++++++.|++|.|+..|+...+|++. ..++.+++|
T Consensus 96 edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~--~~~~~vkrw 173 (865)
T KOG1078|consen 96 EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLP--ISFDVVKRW 173 (865)
T ss_pred hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhc--ccHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcchhh--HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 002235 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS 249 (949)
Q Consensus 172 ~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~ 249 (949)
.+.++... .+.|.++++||+.+|+++++++ |+..+.+.+..-...+|++++.+++...+....++.....+.+++..
T Consensus 174 ~neiqea~-~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s 252 (865)
T KOG1078|consen 174 ANEVQEAV-NSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLES 252 (865)
T ss_pred HHhhhhcc-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 97776655 5667799999999999998765 66777776666567899999999999999888887777789999999
Q ss_pred HHcCCchHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCC
Q 002235 250 LLNAPSTAVIYECAGTLVSLSSA-PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSP 328 (949)
Q Consensus 250 lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~ 328 (949)
||+|+..+|.||||++++.+... +..+ +.+...+++|++++.+-+||.|++.|+++++.||+.+..|+.++..+++|.
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~r~l-~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~ 331 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNSREL-APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDS 331 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCHhhc-chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhccc
Confidence 99999999999999999999753 3333 346777899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCC
Q 002235 329 NLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN 408 (949)
Q Consensus 329 d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~ 408 (949)
|++|.+.|+++|++.+++.|+++++ +++..+++ |.+++|+..+|++|+.+|.+||.+...+++||.++|+++|
T Consensus 332 NrsIat~AITtLLKTG~e~sv~rLm----~qI~~fv~---disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG 404 (865)
T KOG1078|consen 332 NRSIATLAITTLLKTGTESSVDRLM----KQISSFVS---DISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG 404 (865)
T ss_pred ccchhHHHHHHHHHhcchhHHHHHH----HHHHHHHH---hccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999966 57788887 8899999999999999999999999999999999999999
Q ss_pred cccHHH-HHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHhCCCCCcCCC
Q 002235 409 VASAID-VIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVS 487 (949)
Q Consensus 409 ~~v~~e-~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~~p~~~~~ 487 (949)
++-... ++..|..+++.+|+.++.++.+||++|+||+++++-..+++++|..|+..++|..|+++|
T Consensus 405 g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~i------------- 471 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFI------------- 471 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHH-------------
Confidence 886665 689999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCCCCcchhhhhhccccccccCCCceecCCCceeeccccccccCCCCccccCCcCChhhHHhhhcCCchhHHHHHHHHH
Q 002235 488 EEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLT 567 (949)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~dgty~t~~a~~~~~~~~~~~~~~~~~~~~lr~~~~~gd~~l~~~l~~~l~ 567 (949)
||||+|||.++|+. |+ +++++|+..+ +.+| ..+-+
T Consensus 472 -----------------------yNRviLEn~ivRaa-Av----~alaKfg~~~---~~l~-----------~sI~v--- 506 (865)
T KOG1078|consen 472 -----------------------YNRVILENAIVRAA-AV----SALAKFGAQD---VVLL-----------PSILV--- 506 (865)
T ss_pred -----------------------hhhhhhhhhhhHHH-HH----HHHHHHhcCC---CCcc-----------ccHHH---
Confidence 89999999999994 55 4566776333 5555 55555
Q ss_pred HHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHhccCChhHHHHHHhhhHHHHHHH
Q 002235 568 KLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKM 647 (949)
Q Consensus 568 kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~~~~~id~d~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 647 (949)
++.||..|.||+ +|+||..++..+. ++.....++. ..+..|+--| +..+..|+. .+|+..
T Consensus 507 -llkRc~~D~Dde-----vRdrAtf~l~~l~--~~~~~l~~~~-----~~l~~s~~~l----e~~l~~y~~---~~~~~~ 566 (865)
T KOG1078|consen 507 -LLKRCLNDSDDE-----VRDRATFYLKNLE--EKDDVLNQNY-----SGLFVSIPGL----ERSLVSYIT---GSFATP 566 (865)
T ss_pred -HHHHHhcCchHH-----HHHHHHHHHHHhh--hhhhhhcccc-----cccccccchh----HHHHHHHhh---cccccc
Confidence 889999999997 9999998885543 2222111111 2222222222 333334441 234433
Q ss_pred HHHHHHHHHH---HHHHhhccccCCCCccccccccccccCCCcccchhhhhhHHHhhhcCccccccchhhhhccccccCC
Q 002235 648 LSEKQLRESE---ELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGF 724 (949)
Q Consensus 648 ~~~~~~~~~~---~~~~~~~~~~~~~d~~i~f~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~i~qltg~ 724 (949)
++.......- ....... ....+++. +.... ....+++...++.+.++..-..-+. -++-++||.-
T Consensus 567 fd~~~v~~~s~~~~~~~~~~-~k~~~~~~------~~~~~---~~~~d~~~~~l~~i~~~~~lgpl~k--Ss~~i~LTE~ 634 (865)
T KOG1078|consen 567 FDIKSVPVKSQAEEPAINLE-LKQTLVKA------PEKEK---IPKVDEYAAELASIPEFKALGPLFK--SSRPIELTEP 634 (865)
T ss_pred chhhcchhhccccccccccc-ccccccCC------CcccC---CCccchhHHHHhccchhhhcCcccc--ccCcceeccc
Confidence 3332211000 0000000 00000000 00000 0012223333333222210001111 1367788888
Q ss_pred CCcEEEEEEEEEecceeEEEEEEEecChhh-hcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEecC-Cccee-
Q 002235 725 SDPVYAEAYVTVHHYDIVLDVTVINRTKET-LQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSST-ETGVI- 801 (949)
Q Consensus 725 ~dp~Y~ea~v~v~~~~ivld~~v~N~t~~t-LqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~-e~g~i- 801 (949)
+..+|+-+++|+|..|+||||++.||++++ |+|++|++.+.+++++++..|+..|..++++++++.++.... ++.+-
T Consensus 635 e~e~~v~~vKh~f~~~~V~qf~~~Ntl~d~~L~~v~vv~~~~~~~evl~~i~~~slpy~qp~~~~tl~~~p~~~p~~v~~ 714 (865)
T KOG1078|consen 635 EAEYVVKVVKHVFKDHVVLQFDCTNTLNDQLLENVSVVLTPTGGEEVLEKVPTMSLPYDQPGSAFTLVEFPKDDPWAIAE 714 (865)
T ss_pred cceEEeeeeehhhccceEEEEeccCcchHHHHhhheeeecCCCCceeeeeccccCCCCCCCcceEEEEEcCCCCchhhhc
Confidence 888899999999999999999999999996 899999999988888888888888988999999999887632 22222
Q ss_pred -eeeE-EEec----C-------CccccceEEecceeeccccccccccCChhhhHHhhcccCcC--cEEEeeccCCCHHHH
Q 002235 802 -FGNI-VYET----S-------NVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWE--NKVAVNTVIQDEKEF 866 (949)
Q Consensus 802 -fg~i-~y~~----~-------~~~~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efewE--nk~~v~~~~~~l~~~ 866 (949)
||++ +|+. | .|++|+| +|+|++|+.+|||+|...+ +|+..|++++.| .++++ +..++++|+
T Consensus 715 sf~~tlkFtvkdcdp~TgepdedGyeDEY-~LEdlevtv~D~iqkv~k~--NF~aawde~~~e~eetF~L-s~~~tl~eA 790 (865)
T KOG1078|consen 715 GFGNTLKFTVKDCDPNTGEPDDEGYEDEY-VLEDLEVTVGDFVQKVRKS--NFPAAWDELGFEAEETFNL-STVKSIQEA 790 (865)
T ss_pred cceeeEEEEEEecCCCCCCCCccCcccce-eeeceeeehhhhhhHhhcc--cchhhHHhcCcchheeeec-cccchHHHH
Confidence 7776 5764 2 2568998 9999999999999999999 799999998644 67788 668899999
Q ss_pred HHHHHHHcCCeecCCCCccCCCchHHHHHhhcccccCceEEEEEEEEEecCCceEEEEEEeeCChhHHH
Q 002235 867 LDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIAL 935 (949)
Q Consensus 867 l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~ge~al~n~s~~~~~~~~v~g~~riRs~~q~ia~ 935 (949)
++.|++.+||+||+.++.+|.+...|++.|.|...+|.|+|+++.|..+++| |+++|.+||+++-.+.
T Consensus 791 v~~Ii~~LgMqpcE~sd~vPenknsHtl~LsG~frgG~~vlvr~~ma~s~~~-vtm~Vtvrs~e~~~vd 858 (865)
T KOG1078|consen 791 VKKIIDLLGMQPCERTEKVPENKNSHTLLLSGVFRGGYKVLVRAKMALSSGG-ITMKVTVRSEDELVVD 858 (865)
T ss_pred HHHHHHHhCCccccccccCCCCCCceEEEEeeeeeCCceEEEeeeeeecCCC-cEEEEEEecCCccHHH
Confidence 9999999999999999999999999999999999999999999999997654 9999999999997764
No 3
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-74 Score=632.69 Aligned_cols=796 Identities=14% Similarity=0.161 Sum_probs=620.7
Q ss_pred cHHHHHHHhc-CCChHHHH-HHHHHHHHHHhCCCCCC-----chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCC
Q 002235 18 IANEIKEALE-GNDVPAKV-DAMKKAIMLLLNGETLP-----QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (949)
Q Consensus 18 ~~~eir~~L~-s~~~~~k~-~aL~kli~l~~~G~d~s-----~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l 90 (949)
=.|+.++.|+ ||-..+++ .+|.+|.|++..|+.++ .+||.+.| +||++|..+|+.+|++++.+++..
T Consensus 23 ~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~K-lFQhkd~~Lrq~VY~aIkelS~~t----- 96 (898)
T COG5240 23 LLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILK-LFQHKDLYLRQCVYSAIKELSKLT----- 96 (898)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHhhcc-----
Confidence 3478886555 45555666 99999999999999885 69999999 899999999999999999998886
Q ss_pred CchHHHHHHHHHhhcCCCCH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc
Q 002235 91 LPEMILICQNLRNNLQHPNE-YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (949)
Q Consensus 91 ~~e~iLv~NsL~KDL~~~N~-~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~ 169 (949)
+|.+|.+|+|+||++...| .+|++|||.|-++.+.+++....+.+.+++.++++.+|.+|+...||++. .....++
T Consensus 97 -edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp--~~~~~~~ 173 (898)
T COG5240 97 -EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLP--NNFNQTK 173 (898)
T ss_pred -hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhcc--ccHHHHH
Confidence 5689999999999999988 99999999999999999999999999999999999999999999999999 8888999
Q ss_pred chHHH-HHHHHc--------------cCCChhHHHHHHHHHHhcchhh--HHHHHHHHHhh-cCccChhHHHHHHHHHHH
Q 002235 170 DAPEM-IEKVLS--------------TEQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDR-VSEWGELLQMVVLELIRK 231 (949)
Q Consensus 170 ~~~e~-l~~~L~--------------~d~d~~v~~~Al~~L~~i~~~~--ai~~L~~~l~~-i~~~~p~~q~~il~ll~~ 231 (949)
+|.+. .+..+. -..++..++||+.+|+++.+++ |.-.|+.++.. .+..+..+-+.++++...
T Consensus 174 rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ 253 (898)
T COG5240 174 RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVE 253 (898)
T ss_pred HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHH
Confidence 99744 333321 1236788999999999999887 44455555542 344567778889999999
Q ss_pred hhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC---ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 232 VCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS---APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 232 ~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~---~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
+..++|.....+.++|..||.++..+|.+|+|++++.++. .++.+. .+...++.|++++....||.|++.|++|++
T Consensus 254 ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 254 LLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999752 355554 455557778889889999999999999999
Q ss_pred hChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc
Q 002235 309 SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (949)
Q Consensus 309 ~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k 388 (949)
.+|+.+..|+..+..+++|.|++|.+.|++.|+++++++||+++++ .+..+++ |.++.|+..+|++++.++.+
T Consensus 333 ~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~----~I~sfvh---D~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 333 KYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVN----LIPSFVH---DMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred hCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHH----HHHHHHH---hhccCceEEeHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999886 5556666 67789999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCcccHHH-HHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcH
Q 002235 389 FPEVASTVVHLLMDFLGDSNVASAID-VIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEV 467 (949)
Q Consensus 389 f~~~~~~~l~~L~~lL~~~~~~v~~e-~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~ 467 (949)
||.+...+++||.+.|.++|++-.+. ++.+|.++++..|+.++.+++.||++++||+++++...++.+||+.||..+.|
T Consensus 406 Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P 485 (898)
T COG5240 406 FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP 485 (898)
T ss_pred CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc
Confidence 99999999999999999999987776 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcCCCccCCCCcchhhhhhccccccccCCCceecCCCceeeccccccccCCCCccccCCcCChhh
Q 002235 468 ENGIATIKQCLGELPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNL 547 (949)
Q Consensus 468 ~~~~~~i~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~dgty~t~~a~~~~~~~~~~~~~~~~~~~~l 547 (949)
..|+++| |||++|||.++|+ +|+ .++++|+
T Consensus 486 ~~yvrhI------------------------------------yNR~iLEN~ivRs-aAv----~aLskf~--------- 515 (898)
T COG5240 486 GKYVRHI------------------------------------YNRLILENNIVRS-AAV----QALSKFA--------- 515 (898)
T ss_pred chHHHHH------------------------------------HHHHHHhhhHHHH-HHH----HHHHHhc---------
Confidence 9999997 8999999999999 455 2334443
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHhcc
Q 002235 548 RSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCN 627 (949)
Q Consensus 548 r~~~~~gd~~l~~~l~~~l~kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~~~~~id~d~~~r~~~~l~~l~~ 627 (949)
+-..|.++--++.+ ++.||.+|.||+ +|+||...+ +.++....+.+ .+.-|-...|.. |
T Consensus 516 ---ln~~d~~~~~sv~~----~lkRclnD~Dde-----VRdrAsf~l-~~~~~~da~~p--l~~sd~~~dips----l-- 574 (898)
T COG5240 516 ---LNISDVVSPQSVEN----ALKRCLNDQDDE-----VRDRASFLL-RNMRLSDACEP--LFSSDELGDIPS----L-- 574 (898)
T ss_pred ---cCccccccHHHHHH----HHHHHhhcccHH-----HHHHHHHHH-Hhhhhhhhhhc--cccccccCCcch----h--
Confidence 33455554456666 788999999997 999998766 55653322211 122111111111 1
Q ss_pred CChhHHHHHHhhhHHHHHHHHHHHH-----HHHHHHHHHhhccccCCCCccccccccccccCCCcccchhhhhhHHHhhh
Q 002235 628 TGDNIRKIWLQSCRQSFVKMLSEKQ-----LRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRAT 702 (949)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~i~f~~~~~~~~~~~~~~~~~~~~~~~~a~ 702 (949)
+..+..|+++ .+|...++..+ +++-++...+.+ .....++|....+ .+|.+ +.
T Consensus 575 --e~~l~~yIse--~sf~t~fdvnqv~~~tedem~a~nlk~k----ks~t~ld~te~~p-------------~edan-s~ 632 (898)
T COG5240 575 --ELELIGYISE--DSFATAFDVNQVRKFTEDEMKAINLKRK----KSETTLDTTESVP-------------KEDAN-SK 632 (898)
T ss_pred --HHhhheeecc--ccccccccccccccccHhhhhhhhhhhc----cccceecccccCC-------------hhhhh-cc
Confidence 2223334433 34444333322 111111100000 0111122221110 00111 01
Q ss_pred cCccccccchhhhhccccccCCC---------------CcEEEEEEEEEecceeEEEEEEEecChhh-hcceEEEEeecC
Q 002235 703 GEFVKEGDDANKLNRILQLTGFS---------------DPVYAEAYVTVHHYDIVLDVTVINRTKET-LQNLCLELATMG 766 (949)
Q Consensus 703 ~~~~~~~~~~~~l~~i~qltg~~---------------dp~Y~ea~v~v~~~~ivld~~v~N~t~~t-LqNv~vel~t~g 766 (949)
..+...-+|+..|-.|-|+-.|| ..+.|..++|||+.++||||++.||+.+. |.|..|.+.|.|
T Consensus 633 a~pni~tky~d~l~sieq~k~fg~lvnSsr~i~LTEpeaefvVkvvKhvfkD~lVlqF~l~NtL~~i~l~n~~vv~tp~~ 712 (898)
T COG5240 633 ADPNIKTKYADELLSIEQIKPFGQLVNSSREIILTEPEAEFVVKVVKHVFKDRLVLQFLLENTLEGIQLSNGIVVLTPTG 712 (898)
T ss_pred cCCccchhhhhhhhhhhhhccccccccccCceeecCCcceeeehhhhhhhccceEEEEEeccchhheeeccceEEEcCCC
Confidence 11112235666666666666665 34466778899999999999999999995 999999999875
Q ss_pred C-eEEeecCCcceeCCCCeeEEEEEEEEe--cCCcceeeeeE-EEec---------C--CccccceEEecceeecccccc
Q 002235 767 D-LKLVERPQNYTLAPESSKQIKANIKVS--STETGVIFGNI-VYET---------S--NVLERTVVVLNDIHIDIMDYI 831 (949)
Q Consensus 767 ~-l~~~~~p~~~~l~p~~~~~i~~~~kv~--s~e~g~ifg~i-~y~~---------~--~~~~~~~~~lndi~i~i~DyI 831 (949)
+ .++ +-.-+..+..++...+++.||.. ..+.|. |-|. .|+. | .|++|+| .++++.|+.+||+
T Consensus 713 ~d~~e-e~i~~~qids~e~~~~~v~fk~~d~~~~eg~-~~N~l~ftTkeI~~dt~epedegfqDey-~id~~~i~agDfv 789 (898)
T COG5240 713 GDKKE-ESIKVDQIDSSEGTLSIVRFKKLDWDIEEGY-VVNGLFFTTKEIEGDTSEPEDEGFQDEY-SIDPFQITAGDFV 789 (898)
T ss_pred ccchh-heeehhhhccCCCceEEEEecccccccccce-EeccceEEEEeecCCCCCccccccccce-eccceeecccccc
Confidence 5 544 33333334456778899999886 357776 3333 3332 1 3567998 9999999999999
Q ss_pred ccccCChhhhHHhhcccCcCcEEEeecc-CCCHHHHHHHHHHHcCCeecCCCCccCCCchHHHHHhhcccccCceEEEEE
Q 002235 832 SPAVCTDAAFRTMWAEFEWENKVAVNTV-IQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNV 910 (949)
Q Consensus 832 ~p~~~~~~~Fr~~W~efewEnk~~v~~~-~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~ge~al~n~ 910 (949)
+|++.+ +|...+++++.|....++.+ ..+.++.|+.++-...|.|+++++. +.|+..|+..|.||-..|+++++.|
T Consensus 790 ~p~~~~--nf~~~fd~l~~E~~~v~~~~~~~s~~~~~dki~ln~~~~p~e~Te~-p~ds~~hvmkL~Gk~~~G~kV~~~v 866 (898)
T COG5240 790 RPVRIK--NFPATFDRLKREITFVLQGDIYASGKKILDKILLNSMKIPTEETET-PNDSNTHVMKLNGKAYHGTKVSIRV 866 (898)
T ss_pred cchhcc--CCccchhccchhhhheehhhHHHHHHHHHHHHHHhhccccccccCC-CCCCcceEEEEcceeccCceeeehh
Confidence 999998 79999999998876655533 3578999999999999999999875 8889999999999999999999999
Q ss_pred EEEEecCCceEEEEEEeeC
Q 002235 911 SIEKQTDGKLSGYIRIRSK 929 (949)
Q Consensus 911 s~~~~~~~~v~g~~riRs~ 929 (949)
.|.++-.-+++.+|-.|.+
T Consensus 867 kMv~S~~~g~tvkV~~~gE 885 (898)
T COG5240 867 KMVYSMACGCTVKVYCDGE 885 (898)
T ss_pred HHHHhhccCeEEEEEecCc
Confidence 9999755678877777766
No 4
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-74 Score=673.88 Aligned_cols=727 Identities=23% Similarity=0.328 Sum_probs=588.7
Q ss_pred CcccHHHHHHH-hcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch
Q 002235 15 TPAIANEIKEA-LEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (949)
Q Consensus 15 ~~~~~~eir~~-L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e 93 (949)
...+.+..+.. ++|+++.+|++|||++|..|+.|+|++.+|++|||+++ ++|.++|||+|+||..|++.+| ++
T Consensus 16 ~~~~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P-----~~ 89 (757)
T COG5096 16 NADSVAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP-----EL 89 (757)
T ss_pred cchHHhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH-----HH
Confidence 34567788888 99999999999999999999999999999999999886 9999999999999999999997 67
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch-H
Q 002235 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-P 172 (949)
Q Consensus 94 ~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~-~ 172 (949)
++|+||+++||++||||++||+|||+||.++.++++++++++|++|++|+||||||+|++|+.++|+ .+++++++. .
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~ 167 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGL 167 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 799999987 6
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcC-----ccC---hhHHHHHHHHHHHhhhcCchhHHHHH
Q 002235 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVS-----EWG---ELLQMVVLELIRKVCRTNKGEKGKYI 244 (949)
Q Consensus 173 e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~-----~~~---p~~q~~il~ll~~~~~~~p~~~~~li 244 (949)
..+.++|..|.||.|+++|+..|.+|.++.+..|.......++ .++ +|.+..+++.+..+.+..|.....+.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~ 247 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFE 247 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHH
Confidence 6666667799999999999999999999987777665554432 344 89999999999999998899999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhh
Q 002235 245 KIIISLLNAPSTAVIYECAGTLVSLSSA---PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDV 321 (949)
Q Consensus 245 ~~L~~lL~s~s~aV~~Eaa~~l~~l~~~---~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~i 321 (949)
+.+...+++.++.|..-+++.++.+... .........++..++ ..+..-+.++.......+....|..+ .+.+.+
T Consensus 248 ~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll-~~~~~~~~~vl~~~~~~~l~~~~k~~-~~~~~~ 325 (757)
T COG5096 248 ERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLL-AKPESLIQYVLRRNIQIDLEVCSKLL-DKVKKL 325 (757)
T ss_pred HhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHH-cCCHHHHHHHHHHhhHHHHHhhHHHH-HHHhhh
Confidence 9999999999999999999999887532 222222334444444 33323455555555555555556554 556777
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHH
Q 002235 322 LRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLM 401 (949)
Q Consensus 322 l~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~ 401 (949)
+.+-.++|.+++..+++++..+.+.+|..+++.++..++... ..+.++.++++++|+.++.+.+.....|++.++
T Consensus 326 f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~-----~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~l 400 (757)
T COG5096 326 FLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAEN-----HIDAEMVSEAIKALGDLASKAESSVNDCISELL 400 (757)
T ss_pred hhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 778899999999999999999999999999888877544321 267899999999999999887666666666666
Q ss_pred HHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHhCCC
Q 002235 402 DFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCLGEL 481 (949)
Q Consensus 402 ~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~~ 481 (949)
++++ . +|+-|+|.....++...+.++|..++.+
T Consensus 401 el~~----------------------------------------------g-~~~~~~Yi~~e~~~~~~i~v~r~~~~~l 433 (757)
T COG5096 401 ELLE----------------------------------------------G-VWIRGSYIVQEVRIVDCISVIRISVLVL 433 (757)
T ss_pred Hhcc----------------------------------------------c-hhhccchhhhhhcccceeeeeehhcchh
Confidence 5554 5 8999999988887777888899888888
Q ss_pred CCcCCCccCCCCcchhhhhhccccccccCCCceecCCCceeeccccccccCCCCccccCCcCChhhHHhhhcCCchhHHH
Q 002235 482 PFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAV 561 (949)
Q Consensus 482 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~dgty~t~~a~~~~~~~~~~~~~~~~~~~~lr~~~~~gd~~l~~~ 561 (949)
|+...+ ++.++.+|+|+++++++-. ..+|.++... |+|+|+.
T Consensus 434 r~l~~~------------------------~~~~~~~~l~~~~e~l~~~------------~~~P~~k~~~--~~~~~~w 475 (757)
T COG5096 434 RILPNE------------------------YPKILLRGLYALEETLELQ------------SREPRAKSVT--DKYLGAW 475 (757)
T ss_pred hhcCCc------------------------chhhhHHHHHHHHHHhhcc------------ccCcHHHHHH--hhhhHHH
Confidence 886632 3567889999998877411 0156666655 9999999
Q ss_pred HHHHHHHHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHhccCChhHHHHHHhhhH
Q 002235 562 VACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCR 641 (949)
Q Consensus 562 l~~~l~kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~~~~~id~d~~~r~~~~l~~l~~~~~~~~~~~~~~~~ 641 (949)
++..++++..|+. ...+.+....++++....+..|+.++..++..|.+.+.+..
T Consensus 476 l~ge~~~~i~r~~--------------~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~------------ 529 (757)
T COG5096 476 LLGEFSDIIPRLE--------------PELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCN------------ 529 (757)
T ss_pred hHHHHHHHHhhhh--------------HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhcc------------
Confidence 9999999998865 12233445556666655555666777777777666542210
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccCCCcccchhhhhhHHHhhhcCccccccchhhhhccccc
Q 002235 642 QSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQL 721 (949)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~f~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~i~ql 721 (949)
. +.|.++.++++....+ .| .-|.++ .|..-++ +|+
T Consensus 530 -----------------------~---~~d~~v~~~~~~~v~~------~D--lRDra~---------my~~~ls--t~~ 564 (757)
T COG5096 530 -----------------------S---ELDQDVLRRCFDYVLV------PD--LRDRAR---------MYSRLLS--TPL 564 (757)
T ss_pred -----------------------c---hhccHHHHHHHhccCC------hh--HHHHHH---------HHHHHhc--CCC
Confidence 0 1222233333321110 00 001111 1222223 899
Q ss_pred cCCCCcEEEEEEEEEecceeEEEEEEEecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEecCCccee
Q 002235 722 TGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVI 801 (949)
Q Consensus 722 tg~~dp~Y~ea~v~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~e~g~i 801 (949)
+||+||+|+|+++.+.+++|+++.+.+|+|+.+|||+.+.+ |.|.+.....+++..+.|+++..-++++|++++++|.|
T Consensus 565 ~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl~~~~-t~~~l~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~i 643 (757)
T COG5096 565 PEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENLRLDF-TLGTLSTIPLKPIFNLRKGAVVLQQVTVKKPNAELGFI 643 (757)
T ss_pred ccccchhhhcccccccchhhhhhhhccccCHHHHHhhhccc-cccceeccCCCCcccCCCCceeeeeeeeeccchhhhhh
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eeeEEEecCCccccceEEecceeeccccccccccCChhhhHHhhcccCcCcEEEeec-cCCCHHHHHHHHHHHcCCeecC
Q 002235 802 FGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNT-VIQDEKEFLDHIIKSTNMKCLT 880 (949)
Q Consensus 802 fg~i~y~~~~~~~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efewEnk~~v~~-~~~~l~~~l~~li~~tnm~~l~ 880 (949)
+||+.|.+.++.+.-.+++||.++++++|+.|.+..+..||.+|..+||||+++.++ ..+.+.++.+.+++.+||.+.+
T Consensus 644 ~gn~~~~~a~~~~~~~~~~~d~~~s~~~~~~~~t~~e~~~~~~~~~~e~e~~~~~~~n~~~~l~~~~~e~~~~~nm~~~~ 723 (757)
T COG5096 644 TGNINPSGAANEDLRDINLNDSINSISGFVNPRTVDEDYFRELWKMDEFENKIDESSNNPKKLDDYSEEKSREDNMEILT 723 (757)
T ss_pred ccCccCCccccccccccccCCCccchhccccceecccccccccccccccccccCcccCCcHhHHHHHHHhhhcccCCCCC
Confidence 999998865555555679999999999999999999999999999999999999986 5678999999999999999999
Q ss_pred CCCccCCCchHHHHHhhcccccCceEEEEEEEEEecCCceEEE
Q 002235 881 APSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGY 923 (949)
Q Consensus 881 ~~~~~~~~~~~~~~nL~~~s~~ge~al~n~s~~~~~~~~v~g~ 923 (949)
|+...+ |.++|||++ +|+|++++++| + +.+.|+
T Consensus 724 ~~~~~~----~~~~~l~s~----~~~l~~~~l~~-~-~~~~~~ 756 (757)
T COG5096 724 PSDDLE----FSSSSLGSK----SDALMSLCLEK-P-EPVLGL 756 (757)
T ss_pred cccccc----ccccccccc----hhhhhhhhhcC-C-CCccCC
Confidence 965433 999999999 79999999999 3 467665
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=1.2e-69 Score=650.64 Aligned_cols=442 Identities=19% Similarity=0.339 Sum_probs=389.3
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH
Q 002235 15 TPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM 94 (949)
Q Consensus 15 ~~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~ 94 (949)
.+.+.+|||+.|++++..+|+++|||+|++|++|+|++++||+|++ +++++|+++|||+|+||..|++.+| +.+
T Consensus 30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk-~~~S~d~elKKLvYLYL~~ya~~~p-----ela 103 (746)
T PTZ00429 30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVK-LAPSTDLELKKLVYLYVLSTARLQP-----EKA 103 (746)
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccCh-----HHH
Confidence 4568999999999999999999999999999999999999999999 6799999999999999999977653 236
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc--chH
Q 002235 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV--DAP 172 (949)
Q Consensus 95 iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~--~~~ 172 (949)
+|+||+|+||++|+||++||+|||+||+|+.+++++++++.|++++.|++|||||+|++|++|+|+ .+|++++ +|.
T Consensus 104 lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~--~~pelv~~~~~~ 181 (746)
T PTZ00429 104 LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH--DDMQLFYQQDFK 181 (746)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh--hCcccccccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999876 477
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhh------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHH
Q 002235 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDR------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKI 246 (949)
Q Consensus 173 e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~ 246 (949)
+.+.++| .|+|++|++||+.+|++|+.+. ...++.++++.++.++||+|+.+|+++.+|.+.+..+...+++.
T Consensus 182 ~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 182 KDLVELL-NDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTR 260 (746)
T ss_pred HHHHHHh-cCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 7777765 8999999999999999997553 24556667777788999999999999999998888888999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHccCCC--hHHHHHH----HHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002235 247 IISLLNAPSTAVIYECAGTLVSLSSA--PTAIRAA----ANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (949)
Q Consensus 247 L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~~l~~~----a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~ 320 (949)
+.+.|+|.|++|+++|+++++++.+. +..++.+ ..+++.+ .++++|+||++|++|..|.+.+|.+|++|...
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~ 338 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVIFPNLLRTNLDS 338 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence 99999999999999999999999753 4444443 3555555 46789999999999999999999999999766
Q ss_pred heeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHH
Q 002235 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL 400 (949)
Q Consensus 321 il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L 400 (949)
|+ |+.+++.+||++||++|+.++|++|++.|+++|.+ |.. +.|.+|++.+|++||.||.|||..++||+++|
T Consensus 339 Ff-~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~e----Ya~---d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~L 410 (746)
T PTZ00429 339 FY-VRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAE----YAS---GVDMVFVVEVVRAIASLAIKVDSVAPDCANLL 410 (746)
T ss_pred hh-cccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHH----Hhh---cCCHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 65 77666778999999999999999999999987764 433 56889999999999999999999999999999
Q ss_pred HHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHh--cccchHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHh
Q 002235 401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNF--YQIRAARVCTCALWIIGEYCQSLSEVENGIATIKQCL 478 (949)
Q Consensus 401 ~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l--~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l 478 (949)
++++++..++ ..+++.++++|++++|+. .++..|++.+ +++.+++++++++||+|||++.+++..+ .|+..+
T Consensus 411 l~ll~~~~~~-v~e~i~vik~IlrkyP~~--~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~---~L~~~i 484 (746)
T PTZ00429 411 LQIVDRRPEL-LPQVVTAAKDIVRKYPEL--LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKD---IIQRFI 484 (746)
T ss_pred HHHhcCCchh-HHHHHHHHHHHHHHCccH--HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHH---HHHHHH
Confidence 9999887665 558899999999999985 4789999876 7889999999999999999998776544 454445
Q ss_pred CCC
Q 002235 479 GEL 481 (949)
Q Consensus 479 ~~~ 481 (949)
+.|
T Consensus 485 ~~f 487 (746)
T PTZ00429 485 DTI 487 (746)
T ss_pred hhh
Confidence 443
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=2.5e-61 Score=576.38 Aligned_cols=443 Identities=30% Similarity=0.512 Sum_probs=391.1
Q ss_pred cHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHH
Q 002235 18 IANEIKEALEGN--DVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (949)
Q Consensus 18 ~~~eir~~L~s~--~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~i 95 (949)
..+|+++.+++. +.++|+++|+|+++++++|+|++++||+|++ +++++|+.+||+||+|++.+...++ +.++
T Consensus 5 ~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~~~-----~~~~ 78 (526)
T PF01602_consen 5 ISQELAKILNSFKIDISKKKEALKKLIYLMMLGYDISFLFMEVIK-LISSKDLELKRLGYLYLSLYLHEDP-----ELLI 78 (526)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---GSTHHHHHC-TCSSSSHHHHHHHHHHHHHHTTTSH-----HHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCchHHHHHHH-HhCCCCHHHHHHHHHHHHHHhhcch-----hHHH
Confidence 457888888888 8889999999999999999999999999999 6689999999999999999965543 2379
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-hHHH
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEM 174 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~-~~e~ 174 (949)
|++|+++|||+|+||++||+|||+||++.++++++.+.+.|.+++.|++|||||+|++|++++|+ .+|+.+++ |.+.
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~--~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYR--KDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCHCCHHGGHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999988 6888
Q ss_pred HHHHHccCCChhHHHHHHHHHHhc-chhh----HHHHHHHHHhhc-CccChhHHHHHHHHHHHhhhcCchhH--HHHHHH
Q 002235 175 IEKVLSTEQDPSAKRNAFLMLFTC-DQDR----AINYLLTHVDRV-SEWGELLQMVVLELIRKVCRTNKGEK--GKYIKI 246 (949)
Q Consensus 175 l~~~L~~d~d~~v~~~Al~~L~~i-~~~~----ai~~L~~~l~~i-~~~~p~~q~~il~ll~~~~~~~p~~~--~~li~~ 246 (949)
+.++| .|+|++|+.+|+.+++++ .+++ .++.+...+.++ +.++||.|+.+++++.++++.++... ..+++.
T Consensus 157 l~~lL-~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~ 235 (526)
T PF01602_consen 157 LKQLL-SDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEP 235 (526)
T ss_dssp HHHHT-THSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHH
T ss_pred Hhhhc-cCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHH
Confidence 88866 999999999999999999 4443 244454554443 78999999999999999999998888 789999
Q ss_pred HHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccC
Q 002235 247 IISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALN 326 (949)
Q Consensus 247 L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~ 326 (949)
+..++++.+++|+|||++++..+.+.+..++.++.++++++ +++|+|+||++|+.|..+...+|..+......++.+..
T Consensus 236 l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL-~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~ 314 (526)
T PF01602_consen 236 LLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLL-SSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLY 314 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHC
T ss_pred HHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHh-hcccchhehhHHHHHHHhhcccchhhhhhhhhhheecC
Confidence 99999999999999999999999988777777888887777 58999999999999999999996555544444554556
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhC
Q 002235 327 SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (949)
Q Consensus 327 d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~ 406 (949)
++|.+||++||++|+.+++++|+..|+++|.+++... .+.+|++.++++|+.+|.+||+...|+++++++++..
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~------~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSEL------SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhc------cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999877432 2578999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc---HHHHHHHHHH
Q 002235 407 SNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE---VENGIATIKQ 476 (949)
Q Consensus 407 ~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~---~~~~~~~i~~ 476 (949)
+++++..+++..+++++.++|+.++.++.+|++.++++.+++++++++|++|||++..++ +.++++.+.+
T Consensus 389 ~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~ 461 (526)
T PF01602_consen 389 SGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIE 461 (526)
T ss_dssp TGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 6666666643
No 7
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-60 Score=539.99 Aligned_cols=431 Identities=20% Similarity=0.317 Sum_probs=386.5
Q ss_pred ccHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH
Q 002235 17 AIANEIKEALEGN--DVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM 94 (949)
Q Consensus 17 ~~~~eir~~L~s~--~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~ 94 (949)
.+.+.||+.++.+ +...+++.|.||+|++|+|||.+|++++++| +.+|.++..||+|||+...+ +|++ +|+
T Consensus 32 kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclK-Lias~~f~dKRiGYLaamLl--LdE~----qdv 104 (866)
T KOG1062|consen 32 KECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLK-LIASDNFLDKRIGYLAAMLL--LDER----QDL 104 (866)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHH-HhcCCCchHHHHHHHHHHHH--hccc----hHH
Confidence 4678899999995 5567789999999999999999999999999 66999999999999999999 8875 565
Q ss_pred -HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHH
Q 002235 95 -ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (949)
Q Consensus 95 -iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e 173 (949)
+|+||+|+|||+|+|.|+.|+||.+||+|..|||++.+.|.|.+.+.|++|||||+|++|.+|+++ +.|++++.+..
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~ir--K~P~l~e~f~~ 182 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIR--KVPDLVEHFVI 182 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH--cCchHHHHhhH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 99999988766
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhcchh--hHHH-------HHHHHHhhc------------CccChhHHHHHHHHHHHh
Q 002235 174 MIEKVLSTEQDPSAKRNAFLMLFTCDQD--RAIN-------YLLTHVDRV------------SEWGELLQMVVLELIRKV 232 (949)
Q Consensus 174 ~l~~~L~~d~d~~v~~~Al~~L~~i~~~--~ai~-------~L~~~l~~i------------~~~~p~~q~~il~ll~~~ 232 (949)
--.++| .|+|++|...++..+.+++.. +++. -|+.+++++ +..+||+|++||++|+-+
T Consensus 183 ~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 183 AFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 666655 899999999999998887654 2333 344555543 368999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHHcCC------chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 002235 233 CRTNKGEKGKYIKIIISLLNAP------STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (949)
Q Consensus 233 ~~~~p~~~~~li~~L~~lL~s~------s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l 306 (949)
.+.++...+.|.++|.++.+.+ ..+|.|||+++|+.+.+++ .++.+|..++..|+.++|+|+||++|..|.+.
T Consensus 262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~LrvlainiLgkFL~n~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRVLAINILGKFLLNRDNNIRYVALNMLLRV 340 (866)
T ss_pred cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence 9999999999999999999854 4689999999999998765 46678888899999999999999999999999
Q ss_pred HhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhH
Q 002235 307 RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (949)
Q Consensus 307 ~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la 386 (949)
.+..|.+++.|...|+.||.|+|.+||++||++++.++|++||..++++|+.++.. .+++||..++..|..++
T Consensus 341 V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~-------~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 341 VQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES-------SDEDFKADIASKIAELA 413 (866)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876654 36799999999999999
Q ss_pred ccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHhc-----ccchHHHHHHHhhhcccC
Q 002235 387 IKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN-PKLRVSIITRLLDNFY-----QIRAARVCTCALWIIGEY 460 (949)
Q Consensus 387 ~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~-p~~~~~~l~~L~~~l~-----~i~~~~v~~~~lwiLGEy 460 (949)
++|.+...|.+++++..|...|+++..+++..+-.+|... ++..++++.+|...+. +++.+.+.+.++|+||||
T Consensus 414 EkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEY 493 (866)
T KOG1062|consen 414 EKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEY 493 (866)
T ss_pred HhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhh
Confidence 9999999999999999999999999999997666666654 8999999999998773 377788999999999999
Q ss_pred CCCCC
Q 002235 461 CQSLS 465 (949)
Q Consensus 461 ~~~~~ 465 (949)
|+..-
T Consensus 494 Gdlll 498 (866)
T KOG1062|consen 494 GDLLL 498 (866)
T ss_pred hHHhh
Confidence 96543
No 8
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-58 Score=523.13 Aligned_cols=442 Identities=19% Similarity=0.365 Sum_probs=395.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHH
Q 002235 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL 96 (949)
Q Consensus 17 ~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iL 96 (949)
.+-+++++.|+|+++..|++|||++|.+|+.|+|++.+|+.|+|++ +++|.++|||+|+|+-.|++.+|| ..+|
T Consensus 35 ~~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNV-askn~EVKkLVyvYLlrYAEeqpd-----LALL 108 (968)
T KOG1060|consen 35 IRHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNV-ASKNIEVKKLVYVYLLRYAEEQPD-----LALL 108 (968)
T ss_pred CChHHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh-hccCHHHHHHHHHHHHHHhhcCCC-----ceee
Confidence 4678999999999999999999999999999999999999999987 899999999999999999988763 3589
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
.+|++||+|.|||+.+||.|||+|+.|+.|.+++.++-+|++|..|.+|||||.|+.|+.|+|. .+|+.-+.+.++|+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs--Ld~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS--LDPEQKDQLEEVIK 186 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc--CChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 68877777778998
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhh----cCccChhHHHHHHHHHHHhhhc---Cc------------
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDR----VSEWGELLQMVVLELIRKVCRT---NK------------ 237 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~----i~~~~p~~q~~il~ll~~~~~~---~p------------ 237 (949)
.+| +|.+|.|.++|+.++.++||++ ++.|++.++. +.+.++|.|+.+|.+|.+|||. +|
T Consensus 187 ~LL-aD~splVvgsAv~AF~evCPer-ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 187 KLL-ADRSPLVVGSAVMAFEEVCPER-LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred HHh-cCCCCcchhHHHHHHHHhchhH-HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 865 9999999999999999999997 5555544433 4577899999999999999985 22
Q ss_pred ------------------hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHH
Q 002235 238 ------------------GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIV 299 (949)
Q Consensus 238 ------------------~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~ia 299 (949)
.....+++...++|+|.|++|++.+|++++++.+.. .....+.+++++|.++ +.+||++
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-~~~~i~kaLvrLLrs~--~~vqyvv 341 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-QVTKIAKALVRLLRSN--REVQYVV 341 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-HHHHHHHHHHHHHhcC--Ccchhhh
Confidence 124678899999999999999999999999998743 5667899999988654 5899999
Q ss_pred HHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHH
Q 002235 300 LDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLI 379 (949)
Q Consensus 300 L~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv 379 (949)
|+.+..|+.+.|.+|.+|...|+ +.+.++..|+..+|++|..|+|+.|+..|+.+|. .|+. +.+.+|....|
T Consensus 342 L~nIa~~s~~~~~lF~P~lKsFf-v~ssDp~~vk~lKleiLs~La~esni~~ILrE~q----~YI~---s~d~~faa~aV 413 (968)
T KOG1060|consen 342 LQNIATISIKRPTLFEPHLKSFF-VRSSDPTQVKILKLEILSNLANESNISEILRELQ----TYIK---SSDRSFAAAAV 413 (968)
T ss_pred HHHHHHHHhcchhhhhhhhhceE-eecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH----HHHh---cCchhHHHHHH
Confidence 99999999999999999999998 6677788999999999999999999999997665 4444 23457999999
Q ss_pred HHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhccc
Q 002235 380 QAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGE 459 (949)
Q Consensus 380 ~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGE 459 (949)
++||+||.+.-.+.+.|++.|+.+|+.....+..+++.+|+.+++++|-.+.+++.+|.+.++.+..+.++++++|++||
T Consensus 414 ~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige 493 (968)
T KOG1060|consen 414 KAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGE 493 (968)
T ss_pred HHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 002235 460 YCQSLSEVENGIATIKQCLGEL 481 (949)
Q Consensus 460 y~~~~~~~~~~~~~i~~~l~~~ 481 (949)
|+...+.+ +.+.+|...+.|
T Consensus 494 ~~e~vpri--~PDVLR~laksF 513 (968)
T KOG1060|consen 494 YCEIVPRI--APDVLRKLAKSF 513 (968)
T ss_pred hhhhcchh--chHHHHHHHHhh
Confidence 99998764 445555555555
No 9
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-50 Score=454.24 Aligned_cols=797 Identities=17% Similarity=0.239 Sum_probs=547.9
Q ss_pred ccHHHHHHHhcCC---ChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch
Q 002235 17 AIANEIKEALEGN---DVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (949)
Q Consensus 17 ~~~~eir~~L~s~---~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e 93 (949)
.++..||..|++. +.+.|++++.||+|+.++|+|+.|+.|+.++ +++++.+..|++|||+++.+ ++++++ -
T Consensus 35 kELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~-LLss~kysEKqIGYl~is~L--~n~n~d---l 108 (938)
T KOG1077|consen 35 KELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVN-LLSSNKYSEKQIGYLFISLL--LNENSD---L 108 (938)
T ss_pred HHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHH-HhhcCCccHHHHhHHHHHHH--HhcchH---H
Confidence 3678899999987 4689999999999999999999999999999 66999999999999999998 555542 2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhcCCCCccccc--
Q 002235 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQH--RHPYIRRNAILAVMAIYKLPQGEQLLV-- 169 (949)
Q Consensus 94 ~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d--~~pyVRk~A~lal~ki~~l~~~~~li~-- 169 (949)
|-|++|+++|||.+.||...++||.++++|+..++.+.+.++|-+.|.+ ..+|||++|++|+.++|+ .+||+++
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r--~spDl~~~~ 186 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFR--KSPDLVNPG 186 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHh--cCccccChh
Confidence 6799999999999999999999999999999999999999999999976 578999999999999999 9999996
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHHhh----------cCccChhHHHHHHHHH
Q 002235 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDR----------VSEWGELLQMVVLELI 229 (949)
Q Consensus 170 ~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~----------ai~~L~~~l~~----------i~~~~p~~q~~il~ll 229 (949)
+|.+-+-.+| +|++.+|.-+|..++.-+.... |+..|..+... -..++||+|+++++++
T Consensus 187 ~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlL 265 (938)
T KOG1077|consen 187 EWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLL 265 (938)
T ss_pred hHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHH
Confidence 5887776755 9999999888887776664321 23333333321 1257999999999999
Q ss_pred HHhh-hcCchhHHHHHHHHHHHHcCC--------------chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchH
Q 002235 230 RKVC-RTNKGEKGKYIKIIISLLNAP--------------STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNN 294 (949)
Q Consensus 230 ~~~~-~~~p~~~~~li~~L~~lL~s~--------------s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~n 294 (949)
..|- +.||..+.++.+++..+|+-. ..+|.|||++.++++.+.|+.+..++..+.++ +++..+|
T Consensus 266 q~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f-ls~rE~N 344 (938)
T KOG1077|consen 266 QIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQF-LSHRETN 344 (938)
T ss_pred HhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-hhccccc
Confidence 9884 347888999999999998643 25899999999999999898888777776554 5899999
Q ss_pred HHHHHHHHHHHHHhhCh--hhHHHHHHhheeccC-CCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCC
Q 002235 295 VKLIVLDRLNELRSSHR--DIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 295 vr~iaL~~L~~l~~~~p--~~l~~~~~~il~~L~-d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~ 371 (949)
+||.+|+.+..|+...+ +.+..|...|+..|+ +.|.+||++|+++|+.+|+.+|++.||.+|+.++.. .+
T Consensus 345 iRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~t-------Ad 417 (938)
T KOG1077|consen 345 IRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET-------AD 417 (938)
T ss_pred chhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh-------cc
Confidence 99999999999988644 467888888888898 999999999999999999999999999999977664 35
Q ss_pred HHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc-hHHHH
Q 002235 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR-AARVC 450 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~-~~~v~ 450 (949)
...|.+++-++..+++||..+..||+++.+++++-.|+++.+|+|..+.+|+.++++++.++.+++++++.... +....
T Consensus 418 ~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mV 497 (938)
T KOG1077|consen 418 YSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMV 497 (938)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997644 23467
Q ss_pred HHHhhhcccCCCCCCc-----HHHHHHHHHHHhCCCCCcCCCccCCCCcchhhhhhccccccccCCCceecCCCceeecc
Q 002235 451 TCALWIIGEYCQSLSE-----VENGIATIKQCLGELPFFSVSEEGEDTDSSKKVQQQASSTTVSSRRPAVLADGTYATQS 525 (949)
Q Consensus 451 ~~~lwiLGEy~~~~~~-----~~~~~~~i~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~dgty~t~~ 525 (949)
.+..++|||||+.+.+ +..-+..+. . -|-+
T Consensus 498 KvggyiLGEfg~LIa~~prss~~~qFsllh---~----------------------------------------K~~~-- 532 (938)
T KOG1077|consen 498 KVGGYILGEFGNLIADDPRSSPAVQFSLLH---E----------------------------------------KLHL-- 532 (938)
T ss_pred HhhhhhhhhhhhhhcCCCCCChHHHHHHHH---H----------------------------------------Hhcc--
Confidence 7889999999997764 111122210 0 0100
Q ss_pred ccccccCCCCccccCCcCChhhHHhhhcCCchhHHHHHHHHHHHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCC
Q 002235 526 AASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPV 605 (949)
Q Consensus 526 a~~~~~~~~~~~~~~~~~~~~lr~~~~~gd~~l~~~l~~~l~kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~ 605 (949)
.+|.-| +.|-+|..||+.-+++.. +... .+.+.+.
T Consensus 533 -----------------~s~~tr-----------~lLLtTyiKl~nl~PEi~----------~~v~----~vFq~~~--- 567 (938)
T KOG1077|consen 533 -----------------CSPVTR-----------ALLLTTYIKLINLFPEIK----------SNVQ----KVFQLYS--- 567 (938)
T ss_pred -----------------CChhHH-----------HHHHHHHHHHHhhChhhh----------HHHH----HHHHhhc---
Confidence 013336 677889999987666432 2222 3333322
Q ss_pred CCCCCCCChHHHHHHHHHHhccCChhHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHh-hcccc----------C---
Q 002235 606 LPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCR---QSFVKMLSEKQLRESEELKAK-AQISH----------A--- 668 (949)
Q Consensus 606 ~~~~id~d~~~r~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~--- 668 (949)
..+|.+.+.|..-++.+..-..-.++...++.-+ +.=+.+++..++++..+.+.. .+.+. .
T Consensus 568 --n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~tp 645 (938)
T KOG1077|consen 568 --NLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPSAISLRAGAGPKTLANPPPVASEPTP 645 (938)
T ss_pred --ccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhhccCCchhccccccCCcccCCCCcccCCCCc
Confidence 2368888888888888775332234444443221 011123333332211111000 00000 0
Q ss_pred -------CCCccccccccccccCCCcccchhhhh-hHHHhhhcCccccccchhhhhccccccCC---------CCcEEEE
Q 002235 669 -------QPDDLIDFYHLKSRKGMSQLELEDEVQ-DDLKRATGEFVKEGDDANKLNRILQLTGF---------SDPVYAE 731 (949)
Q Consensus 669 -------~~d~~i~f~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~l~~i~qltg~---------~dp~Y~e 731 (949)
..++++..+..+...+..+.....-.. +.+....|..+.+.. .+ +....|+-| .|+.-=-
T Consensus 646 ~~v~~~s~st~~~~v~~~p~~n~t~~~~~~~~~~~di~s~~~~~~s~~~~-p~--~~~~~f~r~~~k~~GVLfed~~iQI 722 (938)
T KOG1077|consen 646 SKVSKRSNSTDPLSVPSPPPPNNTISSVNSQIPSVDIFSGLDGYYSRQIL-PG--NAFYGFTRFCSKDNGVLFEDSLIQI 722 (938)
T ss_pred ccccCCCCCCCcccCCCCCCCCCCccCCCCCCCchhhhcCccccccccCC-Ch--hhhhhhhhheeccCcEEeeccceeE
Confidence 002223222111111000000000000 000000000000000 00 001112222 2444222
Q ss_pred EEE---EEecceeEEEEEEEecChhhhcceEEEEeecCCeE----EeecCCcceeCCCCeeE--EEEEEEEecCCcceee
Q 002235 732 AYV---TVHHYDIVLDVTVINRTKETLQNLCLELATMGDLK----LVERPQNYTLAPESSKQ--IKANIKVSSTETGVIF 802 (949)
Q Consensus 732 a~v---~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~----~~~~p~~~~l~p~~~~~--i~~~~kv~s~e~g~if 802 (949)
.|+ +=++.+|+| .-.|.|..+|++++=.+.+.|+++ ..-+|...+++|+...+ +-+......-+.-++
T Consensus 723 gvk~e~r~~~grl~L--fygNkts~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~pil- 799 (938)
T KOG1077|consen 723 GVKSETRNNLGRLYL--FYGNKTSVPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPPIL- 799 (938)
T ss_pred EEeeeccCcCCeEEE--EecccccccccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCCeE-
Confidence 333 334455554 568999999999999998888844 33568889999998544 223222222222222
Q ss_pred eeEEEecCCcc--ccceEEecceeeccccccccccCChhhhHHhhcccCcCc----EE-EeeccCCCHHHHHHHHHHHcC
Q 002235 803 GNIVYETSNVL--ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWEN----KV-AVNTVIQDEKEFLDHIIKSTN 875 (949)
Q Consensus 803 g~i~y~~~~~~--~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efewEn----k~-~v~~~~~~l~~~l~~li~~tn 875 (949)
.|.|..-++. -+.. + -+-+.|.-|++|...+.++|=.-|..+.-+- ++ .-+... +.. -++.....+|
T Consensus 800 -~isfk~g~ti~~~ta~--l-~lp~~iskf~~Pt~l~s~~Ff~rWk~ls~~~~~~q~~fk~~rpl-d~~-~l~~~l~gf~ 873 (938)
T KOG1077|consen 800 -AISFKFGGTINLKTAI--L-KLPVLISKFFQPTELTSEDFFSRWKQLSGPQQEAQEVFKANRPL-DAP-SLENKLLGFG 873 (938)
T ss_pred -EEEEEeCCchhhhhhc--e-echhhHhhhcCcccccHHHHHHHHHhcccchhHHHHHHhcCCcc-ccH-HHHHHHhhhh
Confidence 1222221110 0111 1 3467788999999999999999999985332 22 221111 222 2555667778
Q ss_pred CeecCCCCccCCCchHHHHHhhcccccCceEE---EEEEEEEecCCceEEEEEEeeCChhHHHhhhhhhh
Q 002235 876 MKCLTAPSALDGDCGFLAANLYAKSVFGEDAL---VNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKIT 942 (949)
Q Consensus 876 m~~l~~~~~~~~~~~~~~~nL~~~s~~ge~al---~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~~i~ 942 (949)
+++|+. ++.+ .-||.|-.++-.... -=+++|.+ .+.....+.|||.+..+|.-|.|-|.
T Consensus 874 ~~l~~~---VDpn----p~nlv~agii~t~tq~vgCL~RiEpn-~~~~~~rltvrss~~tlak~l~e~l~ 935 (938)
T KOG1077|consen 874 QTLLDN---VDPN----PSNLVGAGIIHTKSQNVGCLLRIEPN-AQAQMYRLTVRTSKPTLAKELVELLK 935 (938)
T ss_pred HHHhcc---CCCC----ccceEEEEEEeecceeeeeEEEeccC-CcceEEEEEEecCCchHHHHHHHHHh
Confidence 988887 3333 346666655533333 23345555 57889999999999999988887663
No 10
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-52 Score=482.45 Aligned_cols=439 Identities=21% Similarity=0.356 Sum_probs=394.8
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHH
Q 002235 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (949)
Q Consensus 16 ~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~i 95 (949)
..+..++|+.|.+....+|++++||+|..|..|+|+|.+|++|++ ++++.|.++|||+|||+..|++..|+ +.+
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk-~~~T~dlelKKlvyLYl~nYa~~~P~-----~a~ 85 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVK-CMQTRDLELKKLVYLYLMNYAKGKPD-----LAI 85 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHh-hcccCCchHHHHHHHHHHHhhccCch-----HHH
Confidence 457789999998777788889999999999999999999999999 78999999999999999999988863 359
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc--hHH
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD--APE 173 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~--~~e 173 (949)
+++|++.||..++||.+|++|+|++|.++.+.+.+.+...+++++.|.+|||||+|+.|+.++|. .++++..+ +.+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~ 163 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVD 163 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 78888876 468
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhcchhh--------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHH
Q 002235 174 MIEKVLSTEQDPSAKRNAFLMLFTCDQDR--------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIK 245 (949)
Q Consensus 174 ~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~ 245 (949)
.+..++ .|.||.|+.||+.+|.+|.... ..+.+.+++..++..++|.|+.+++.+..|.+.++.+...+++
T Consensus 164 ~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~ 242 (734)
T KOG1061|consen 164 ALKDLL-SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICE 242 (734)
T ss_pred HHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHH
Confidence 888866 7999999999999999986443 2344556666677889999999999999999998889999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHccCCC-----hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002235 246 IIISLLNAPSTAVIYECAGTLVSLSSA-----PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (949)
Q Consensus 246 ~L~~lL~s~s~aV~~Eaa~~l~~l~~~-----~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~ 320 (949)
.+.+.|+|.+++|++.+.+.++.+... ....+..+.+++.++ ++.+.+.|++|++++.+.++.|..+..+...
T Consensus 243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tll--s~~~e~qyvaLrNi~lil~~~p~~~~~~~~~ 320 (734)
T KOG1061|consen 243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLL--SSESEIQYVALRNINLILQKRPEILKVEIKV 320 (734)
T ss_pred HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeee--cccchhhHHHHhhHHHHHHhChHHHHhHhHe
Confidence 999999999999999999999887542 123445666666655 3345999999999999999999988887777
Q ss_pred heeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHH
Q 002235 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLL 400 (949)
Q Consensus 321 il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L 400 (949)
|+ |-.+++.||+..+|+++..+++.+|+.+++.+|+ + |.. +.|.+|.+.+|++||.||.|+++. ..|++.|
T Consensus 321 Ff-~kynDPiYvK~eKleil~~la~~~nl~qvl~El~-e---Yat---evD~~fvrkaIraig~~aik~e~~-~~cv~~l 391 (734)
T KOG1061|consen 321 FF-CKYNDPIYVKLEKLEILIELANDANLAQVLAELK-E---YAT---EVDVDFVRKAVRAIGRLAIKAEQS-NDCVSIL 391 (734)
T ss_pred ee-eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHH-H---hhh---hhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHH
Confidence 66 8888899999999999999999999999998776 3 333 678999999999999999999988 8899999
Q ss_pred HHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHHH
Q 002235 401 MDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATI 474 (949)
Q Consensus 401 ~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i 474 (949)
+++++...+|+.+|++..++++.+++|+..+.++..|+..++.+.+|+++.+.+||+|||++.+++..++++.+
T Consensus 392 Lell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f 465 (734)
T KOG1061|consen 392 LELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESF 465 (734)
T ss_pred HHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877766
No 11
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-50 Score=456.79 Aligned_cols=438 Identities=21% Similarity=0.332 Sum_probs=389.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHH
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILI 97 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv 97 (949)
.+.|+|+++.+++...|..++.|+.|+.|.|.|++|.-|+++. +|++..+..||.||++...- ++++. +.+.|.
T Consensus 37 ~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~ive-Vmsssk~~~krigylaa~qS--f~~~t---dvlmL~ 110 (877)
T KOG1059|consen 37 CLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVE-VMSSSKFQQKRIGYLAASQS--FHDDT---DVLMLT 110 (877)
T ss_pred HHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhhhhh-hhhhhhhHHHHHhHHHHHHh--hcCCc---cHHHHH
Confidence 5689999999999999999999999999999999999999998 89999999999999998875 55544 568999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-hHHHHH
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEMIE 176 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~-~~e~l~ 176 (949)
+|.++||++|+|.|-.|.||..|+++.+|+++..|.+.|..+|.|..|||||+|++.+||+|. ++|+.++. ++.+.+
T Consensus 111 tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL--kYPeAlr~~FprL~E 188 (877)
T KOG1059|consen 111 TNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL--KYPEALRPCFPRLVE 188 (877)
T ss_pred HHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH--hhhHhHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99988765 678888
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHH------HHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYL------LTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL 250 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L------~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~l 250 (949)
+ | .|+||+|+.+|+.++||+...++-.|| .+++. +..+.|..+++|++++.+.+.+|+...++++.|.++
T Consensus 189 k-L-eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 189 K-L-EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITEL 264 (877)
T ss_pred h-c-cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHh--ccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHH
Confidence 8 5 899999999999999999766544332 23332 467899999999999999999999999999999999
Q ss_pred HcCCchH-HHHHHHHHHHccC------CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhhee
Q 002235 251 LNAPSTA-VIYECAGTLVSLS------SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR 323 (949)
Q Consensus 251 L~s~s~a-V~~Eaa~~l~~l~------~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~ 323 (949)
+++++.+ ++|||++|++.-+ .+...++.++.. ++.|+.++|+|+||++|-.+.+|...||..++.|..-|++
T Consensus 265 i~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqK-Lr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlr 343 (877)
T KOG1059|consen 265 MESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQK-LRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILR 343 (877)
T ss_pred HHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHH-HhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHH
Confidence 9999875 9999999998762 234456666666 5777799999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc--Cc--ccHHHHHHH
Q 002235 324 ALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK--FP--EVASTVVHL 399 (949)
Q Consensus 324 ~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k--f~--~~~~~~l~~ 399 (949)
||+|.|.+||.+||++|+.+++++|+.+||+.||+|+.+. .+..||.+++..|-.+|.+ |. ...+||+.+
T Consensus 344 cL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~a------e~t~yrdell~~II~iCS~snY~~ItdFEWYlsV 417 (877)
T KOG1059|consen 344 CLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKA------EGTNYRDELLTRIISICSQSNYQYITDFEWYLSV 417 (877)
T ss_pred HhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999998763 2458999999999888864 43 456899999
Q ss_pred HHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhccc------c----hHHHHHHHhhhcccCCCCCCcHHH
Q 002235 400 LMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQI------R----AARVCTCALWIIGEYCQSLSEVEN 469 (949)
Q Consensus 400 L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i------~----~~~v~~~~lwiLGEy~~~~~~~~~ 469 (949)
|+++.+-.|..-...+...+.++.-+.|..|+..+......+++- . -++++.+|+|++|||++..+++..
T Consensus 418 lveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~ 497 (877)
T KOG1059|consen 418 LVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPND 497 (877)
T ss_pred HHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHH
Confidence 999999988766667778888998899999999999999988832 2 367999999999999999999888
Q ss_pred HHHHH
Q 002235 470 GIATI 474 (949)
Q Consensus 470 ~~~~i 474 (949)
.++.+
T Consensus 498 ~leam 502 (877)
T KOG1059|consen 498 TLEAM 502 (877)
T ss_pred HHHHH
Confidence 87765
No 12
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=100.00 E-value=3.1e-52 Score=389.72 Aligned_cols=129 Identities=77% Similarity=1.246 Sum_probs=126.4
Q ss_pred ccceEEecceeeccccccccccCChhhhHHhhcccCcCcEEEeeccCCCHHHHHHHHHHHcCCeecCCCCccCCCchHHH
Q 002235 814 ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLA 893 (949)
Q Consensus 814 ~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efewEnk~~v~~~~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~ 893 (949)
|++||+||||||||||||+|++|++.+||+||.+|||||||+|+|+++||++|+++++|.|||+||||++.+.++|+|++
T Consensus 1 ~~~~viLNdIhIdImDyI~Pa~~~~~~FR~mW~eFEWENKi~V~t~~~dl~~yl~~i~k~tnM~~Ltp~~~l~~~~~fl~ 80 (129)
T PF14806_consen 1 DRNCVILNDIHIDIMDYIKPATCSDEEFRSMWAEFEWENKISVNTNITDLREYLDHIMKSTNMKCLTPESALSGDCGFLS 80 (129)
T ss_pred CCcEEEcccceEcHHHhcCcccCCHHHHHHHHHhheeeeeEEEecCCCCHHHHHHHHHHhcCcceeccccccCCCCCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCceEEEEEEEEEecCCceEEEEEEeeCChhHHHhhhhhhh
Q 002235 894 ANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKIT 942 (949)
Q Consensus 894 ~nL~~~s~~ge~al~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~~i~ 942 (949)
|||||||+||||||||||+||+++|+|+|++|||||+||||+||||||+
T Consensus 81 ~Nlya~S~fgedaL~Nlsiek~~~~~i~G~vRIRSk~qgia~slgd~i~ 129 (129)
T PF14806_consen 81 ANLYARSIFGEDALANLSIEKQADGKISGHVRIRSKTQGIALSLGDKIT 129 (129)
T ss_pred EEEEEEeccCCeeEEEEEEEecCCCeEEEEEEEeeCCcChhhhhccccC
Confidence 9999999999999999999998899999999999999999999999986
No 13
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=100.00 E-value=1.5e-42 Score=327.27 Aligned_cols=139 Identities=69% Similarity=0.997 Sum_probs=128.5
Q ss_pred CCCccccccccccccCCCcccchhhhhhHHHhhhcCccccccchhhhhccccccCCCCcEEEEEEEEEecceeEEEEEEE
Q 002235 669 QPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRATGEFVKEGDDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVI 748 (949)
Q Consensus 669 ~~d~~i~f~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~i~qltg~~dp~Y~ea~v~v~~~~ivld~~v~ 748 (949)
|+|++|+|+||+++.+.+ ..++++++++.+|+|.....+++.++|++|+|||||||||||||||+||||||+||++++
T Consensus 1 q~D~~i~f~ql~~~~~~~--~~~~~~~~dl~~a~g~~~~~~~~~skL~kv~QLTGfsDPvYaEA~v~v~q~DIvLDvllv 78 (140)
T PF07718_consen 1 QPDDLISFRQLKGKKALS--GDEDDFEDDLSRATGSIDKSEDFSSKLNKVVQLTGFSDPVYAEAYVTVHQYDIVLDVLLV 78 (140)
T ss_pred CCCCcEeheccccCcccc--ccchhhhhhHHHhhCCccccchhhhhhccEEecccCCCCeEEEEEEEEEeeeEEEEEEEE
Confidence 789999999998776532 223567889999998665677888999999999999999999999999999999999999
Q ss_pred ecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEecCCcceeeeeEEEec
Q 002235 749 NRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYET 809 (949)
Q Consensus 749 N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~e~g~ifg~i~y~~ 809 (949)
|||++|||||+|||+|+||||++++||+++|+||++.+++++|||+|+|||+|||||+|+.
T Consensus 79 NqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 79 NQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred eCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 14
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=99.68 E-value=1.9e-16 Score=154.27 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=83.3
Q ss_pred ccchhhhhccccccCCCCcE--------------EE-EEEEEEecceeEEEEEEEecChhh-hcceEEEEeecCC-eEEe
Q 002235 709 GDDANKLNRILQLTGFSDPV--------------YA-EAYVTVHHYDIVLDVTVINRTKET-LQNLCLELATMGD-LKLV 771 (949)
Q Consensus 709 ~~~~~~l~~i~qltg~~dp~--------------Y~-ea~v~v~~~~ivld~~v~N~t~~t-LqNv~vel~t~g~-l~~~ 771 (949)
+.|+.+|++|+||.+||.++ |+ .|++|+|..||||||.|.||.+|+ |+||+|.+.+..+ |+++
T Consensus 3 ~~y~~~l~~ipe~~~lG~l~kSs~~v~LTE~EtEY~V~~vKHiF~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~~~~~ 82 (151)
T PF08752_consen 3 EEYAEQLSKIPEFANLGPLFKSSKPVELTESETEYVVSCVKHIFAEHIVLQFNVTNTLNDQVLENVSVVLEPSEEEFEEV 82 (151)
T ss_dssp HHHHHHHHTSGGGTTS-S--EE-S-EE-S-TTSSEEEEEEEEE-SSEEEEEEEEEE--TTEEEEEEEEEEEESSS--EEE
T ss_pred HHHHHHHHcChhHhhcCcccccCCCEeccCcccEEEEEEEEEEecccEEEEEEEeeccCceeeeeEEEEEecCCceEEEE
Confidence 56788899999999999766 76 788899999999999999999997 8999999999755 9999
Q ss_pred ecCCcceeCCCCeeEEEEEEEEe---cCCcceeeeeE-EEec----C-------CccccceEEecceeecc
Q 002235 772 ERPQNYTLAPESSKQIKANIKVS---STETGVIFGNI-VYET----S-------NVLERTVVVLNDIHIDI 827 (949)
Q Consensus 772 ~~p~~~~l~p~~~~~i~~~~kv~---s~e~g~ifg~i-~y~~----~-------~~~~~~~~~lndi~i~i 827 (949)
...|..+|.|++++++|+.++.. +..+|. |+|+ .|.. | .|++|+| +|+|++|+.
T Consensus 83 ~~ipi~~L~~~~~~~~yV~l~~~~~~~~~~~~-f~~~LkF~vke~Dp~tge~~~~GyeDEY-~lEdlel~v 151 (151)
T PF08752_consen 83 FIIPIPSLPYNEPGSCYVVLKRPPPGSIPSGT-FSNTLKFTVKEVDPSTGEPEDEGYEDEY-QLEDLELTV 151 (151)
T ss_dssp EEE-EEEE-CT--EEEEEEEE-SSSTT---EE-EEEEEEEEEEEB-TTT--B-S--EEEEE-E---EEE-G
T ss_pred EEEEhhhCCCCCCeeEEEEEEeCCCCCceeee-EEeEEEEEEEeecCCCCCcCCCCccceE-EeccEEEeC
Confidence 99999999999999999999993 234454 8888 5875 2 3568999 999999863
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=6.3e-12 Score=150.69 Aligned_cols=414 Identities=21% Similarity=0.268 Sum_probs=267.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHH---hhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-H
Q 002235 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVR---YVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-I 95 (949)
Q Consensus 20 ~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik---~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-i 95 (949)
-++-+.+.+++...|+-+-- ++...+..-+....-++. .=+.++|+..|-++.=++..+ .+ +|+ -
T Consensus 45 ~~vi~l~~s~~~~~Krl~yl---~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i--~~------~~~~~ 113 (526)
T PF01602_consen 45 MEVIKLISSKDLELKRLGYL---YLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI--RT------PEMAE 113 (526)
T ss_dssp HHHHCTCSSSSHHHHHHHHH---HHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---S------HHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH---HHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh--cc------cchhh
Confidence 34555667777766664432 222223333332222222 224677777776666665555 22 566 3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCC--chhhHHH-HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc----ccc
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEP-LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE----QLL 168 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~--~~el~~~-l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~----~li 168 (949)
-+...+.+=+.|++|+||-.|+-++.++- .|+.++. +.+.+.+++.|++|-|+.+|+.++..+ + ..| .++
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~--~~~~~~~~~~ 190 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K--CNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H--CTHHHHTTHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c--cCcchhhhhH
Confidence 56788888888899999988888888884 6888877 788888888888899998888888888 3 222 457
Q ss_pred cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh---H--HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHH
Q 002235 169 VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---A--INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY 243 (949)
Q Consensus 169 ~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~---a--i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~l 243 (949)
+.+...+.+++ .+.+|..+..++.+|..+.+.. + ...+..+...+...++-.+...++++..+.+. +......
T Consensus 191 ~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~ 268 (526)
T PF01602_consen 191 PKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PELLQKA 268 (526)
T ss_dssp HHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHH
T ss_pred HHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hHHHHhh
Confidence 77777777765 7888888888888888876532 2 11222222223345566677777777766543 3356778
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhhe
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVL 322 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il 322 (949)
++.+..+|.++++.++|-+.+++..+.. .+..+.. ....+..+..+.|+.+|..+++.|..++. +.-+..-+..+.
T Consensus 269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~Il~eL~ 345 (526)
T PF01602_consen 269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFN-QSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKEILDELL 345 (526)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGT-HHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhehhHHHHHHHhhcccchhhhh-hhhhhheecCCCChhHHHHHHHHHhhccc--ccchhhHHHHHH
Confidence 8888888888888888888888888754 3344442 22223334447788888888888888864 333444445555
Q ss_pred ecc-CCCCHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHH
Q 002235 323 RAL-NSPNLDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHL 399 (949)
Q Consensus 323 ~~L-~d~d~~Ir~~aL~lL~~l~~--~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~ 399 (949)
..+ .-+|.++|+.++..+..++. +.+.+..++.+.+-+.. .+..+..+++..|..+..++|+...+.+..
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-------~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~ 418 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-------SGDYVSNEIINVIRDLLSNNPELREKILKK 418 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-------TGGGCHCHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-------ccccccchHHHHHHHHhhcChhhhHHHHHH
Confidence 566 34477788888888887764 55667777777654331 234677888888888888888888888888
Q ss_pred HHHHHhCCCc-ccHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHhcccchHHHHHHHhhhcccC
Q 002235 400 LMDFLGDSNV-ASAIDVIIFVREIIEMNPK--LRVSIITRLLDNFYQIRAARVCTCALWIIGEY 460 (949)
Q Consensus 400 L~~lL~~~~~-~v~~e~i~~l~~ii~~~p~--~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy 460 (949)
|.+.+.+-.. .....++..+.+.....++ .-..++..+.+.+.+ +.+.++..++-.+...
T Consensus 419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~-~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 419 LIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE-ESPEVKLQILTALAKL 481 (526)
T ss_dssp HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHH
Confidence 8888887443 3445566777777665555 444556666665543 2334444444444433
No 16
>PRK09687 putative lyase; Provisional
Probab=99.45 E-value=9e-12 Score=136.50 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=179.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
..+.|.+-|.|+|..+|..|++.|+.+.++++.+.+ .+++.|.+|.||+.|+-+++.+-. ... ..+...+.+.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l----~~ll~~~d~~vR~~A~~aLg~lg~--~~~-~~~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLA----IELCSSKNPIERDIGADILSQLGM--AKR-CQDNVFNILN 96 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHH----HHHHhCCCHHHHHHHHHHHHhcCC--Ccc-chHHHHHHHH
Confidence 346777888999999999999999999998886655 457899999999999999999754 221 1123445665
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCch
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (949)
.++..|+|+.|+..|+.+|.+++...+ .+.+ ..++.+...+.+.++
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~------------~~~~----------------------~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNP------------LYSP----------------------KIVEQSQITAFDKST 142 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhccccccc------------ccch----------------------HHHHHHHHHhhCCCH
Confidence 555699999999999999998765421 0111 123445555677778
Q ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHH
Q 002235 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (949)
Q Consensus 257 aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~a 336 (949)
.|++.++.++..+.. + .+...++.++ +++|+.||..+...|..+....|.++.. ++..|.|+|..||..|
T Consensus 143 ~VR~~a~~aLg~~~~-~----~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~~~~~~~----L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 143 NVRFAVAFALSVIND-E----AAIPLLINLL-KDPNGDVRNWAAFALNSNKYDNPDIREA----FVAMLQDKNEEIRIEA 212 (280)
T ss_pred HHHHHHHHHHhccCC-H----HHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCCHHHHHH----HHHHhcCCChHHHHHH
Confidence 888888888887764 3 2444555555 6778888888888888874445655544 5567788888888888
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHh-CCCcccHHHH
Q 002235 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLG-DSNVASAIDV 415 (949)
Q Consensus 337 L~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~-~~~~~v~~e~ 415 (949)
+..|.++.+++-+..|++.|. +..++..++.++|.++.+ ..+..|..++. +..+++...+
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~-------------~~~~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELK-------------KGTVGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred HHHHHccCChhHHHHHHHHHc-------------CCchHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChhHHHHH
Confidence 888888888766666554332 123777888888887753 56777777775 4445555555
Q ss_pred HHHHH
Q 002235 416 IIFVR 420 (949)
Q Consensus 416 i~~l~ 420 (949)
+..+.
T Consensus 274 ~~a~~ 278 (280)
T PRK09687 274 IDKLK 278 (280)
T ss_pred HHHHh
Confidence 55443
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=1.6e-10 Score=146.26 Aligned_cols=270 Identities=16% Similarity=0.160 Sum_probs=161.7
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh-hHHHHHHHHHh
Q 002235 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD-RAINYLLTHVD 212 (949)
Q Consensus 134 ~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~-~ai~~L~~~l~ 212 (949)
+.+.+.|.|++|.||+.|+.++.++.. +...+.+..+| +|+|+.|+..|+.+|.++... .+...|...++
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc
Confidence 345566677777777777777776543 22333444544 777777777777777666321 11223333333
Q ss_pred hcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCc
Q 002235 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSD 292 (949)
Q Consensus 213 ~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d 292 (949)
..+|..+..+++.|......++ ..+...|.+.++.|+.+|+++|..+...+ . ++. ++.+++
T Consensus 695 ---~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av~aL~~~~~~~-~-------l~~-~l~D~~ 755 (897)
T PRK13800 695 ---SPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAVRALVSVDDVE-S-------VAG-AATDEN 755 (897)
T ss_pred ---CCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHHHHHhcccCcH-H-------HHH-HhcCCC
Confidence 3567777777777766543222 23455677777777777777777764322 1 222 346777
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcH-HHHHHHHHHHHHHhccCCccCC
Q 002235 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNI-NEVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv-~~Iv~~L~kel~~~~~~~~d~~ 371 (949)
+.||..+...|..+....+..+.. +..++.|+|+.||..|+..|..++++..+ ..++..| . |.+
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~~~~----L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL--------~---d~d 820 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPAGDA----VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAAL--------R---ASA 820 (897)
T ss_pred HHHHHHHHHHHHHhccccchhHHH----HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHh--------c---CCC
Confidence 777777777777775544432222 33566777777777777777777766543 2222211 1 345
Q ss_pred HHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHH
Q 002235 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCT 451 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~ 451 (949)
..+|..++++++.+.. ...++.|+.+|.|....++.+++..|..+ ... ..+...|...++| .++.+++
T Consensus 821 ~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~----~~a~~~L~~al~D-~d~~Vr~ 888 (897)
T PRK13800 821 WQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW-PGD----PAARDALTTALTD-SDADVRA 888 (897)
T ss_pred hHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCC----HHHHHHHHHHHhC-CCHHHHH
Confidence 6777777777776542 24557777777777777777777777765 111 2345555566655 3556777
Q ss_pred HHhhhcc
Q 002235 452 CALWIIG 458 (949)
Q Consensus 452 ~~lwiLG 458 (949)
.+.+.|+
T Consensus 889 ~A~~aL~ 895 (897)
T PRK13800 889 YARRALA 895 (897)
T ss_pred HHHHHHh
Confidence 6666554
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=2.9e-10 Score=144.06 Aligned_cols=274 Identities=15% Similarity=0.140 Sum_probs=207.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
..+.|..-|.|+++.||-.|+..|+.+..++.++ .+.++|.|+++.||+.|+.++.++-. ..+. ...+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~----~L~~aL~D~d~~VR~~Aa~aL~~l~~--~~~~-----~~~L~ 690 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGP----ALVAALGDGAAAVRRAAAEGLRELVE--VLPP-----APALR 690 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHH----HHHHHHcCCCHHHHHHHHHHHHHHHh--ccCc-----hHHHH
Confidence 3467888899999999999999999999877654 45578899999999999999988855 2221 13344
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCch
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (949)
..| .++|+.|+..|+.+|..+..... ..|.. .+...+|+.+...++.|.++.. + +.|..++.+.++
T Consensus 691 ~~L-~~~d~~VR~~A~~aL~~~~~~~~-~~l~~---~L~D~d~~VR~~Av~aL~~~~~--~-------~~l~~~l~D~~~ 756 (897)
T PRK13800 691 DHL-GSPDPVVRAAALDVLRALRAGDA-ALFAA---ALGDPDHRVRIEAVRALVSVDD--V-------ESVAGAATDENR 756 (897)
T ss_pred HHh-cCCCHHHHHHHHHHHHhhccCCH-HHHHH---HhcCCCHHHHHHHHHHHhcccC--c-------HHHHHHhcCCCH
Confidence 545 78999999999999988865543 33333 3457889999999999988632 1 346778999999
Q ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHH
Q 002235 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (949)
Q Consensus 257 aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~a 336 (949)
.|+..++.+|..+..... .....+. .++.++|+.+|..++..|..+... +.+... +...|.|+|..||..|
T Consensus 757 ~VR~~aa~aL~~~~~~~~---~~~~~L~-~ll~D~d~~VR~aA~~aLg~~g~~-~~~~~~----l~~aL~d~d~~VR~~A 827 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA---PAGDAVR-ALTGDPDPLVRAAALAALAELGCP-PDDVAA----ATAALRASAWQVRQGA 827 (897)
T ss_pred HHHHHHHHHHHHhccccc---hhHHHHH-HHhcCCCHHHHHHHHHHHHhcCCc-chhHHH----HHHHhcCCChHHHHHH
Confidence 999999999999875321 1122333 445788999999999999887432 122222 5567899999999999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHH
Q 002235 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVI 416 (949)
Q Consensus 337 L~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i 416 (949)
+..|..+.++.-+..++..|. |.+..+|+.++.+|+.+. ..+...+.|...+.+....+..+++
T Consensus 828 a~aL~~l~~~~a~~~L~~~L~-----------D~~~~VR~~A~~aL~~~~-----~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 828 ARALAGAAADVAVPALVEALT-----------DPHLDVRKAAVLALTRWP-----GDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHhccccchHHHHHHHhc-----------CCCHHHHHHHHHHHhccC-----CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999998887776665332 668899999999999861 1235677888899998888888887
Q ss_pred HHHH
Q 002235 417 IFVR 420 (949)
Q Consensus 417 ~~l~ 420 (949)
..|.
T Consensus 892 ~aL~ 895 (897)
T PRK13800 892 RALA 895 (897)
T ss_pred HHHh
Confidence 7765
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=99.23 E-value=5.8e-09 Score=127.28 Aligned_cols=368 Identities=14% Similarity=0.202 Sum_probs=243.0
Q ss_pred HHHHhhcCCCCHHHHHHHHH-HhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHH
Q 002235 99 QNLRNNLQHPNEYIRGVTLR-FLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK 177 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr-~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~ 177 (949)
+-|++.|++++..-|-.|++ .++.+....=+..+.+.|.+++..++.-+||-.++.+.+..+ ..|++.--..+.+.+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--~~pelalLaINtl~K 112 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--LQPEKALLAVNTFLQ 112 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--cChHHHHHHHHHHHH
Confidence 66789999999988888886 445554444557788999999999999999999999999888 677654333444444
Q ss_pred HHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhh-cCccChhHHHHHHHHHHHhhhcCchh--HHHHHHHHHHHHcCC
Q 002235 178 VLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGE--KGKYIKIIISLLNAP 254 (949)
Q Consensus 178 ~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~p~~--~~~li~~L~~lL~s~ 254 (949)
-+ .|+||.++..|+..|+.|+-..-++++...+.+ +...+|+..-..+=.+.++.+.+|+. ...+++.|..+|..+
T Consensus 113 Dl-~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 113 DT-TNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred Hc-CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC
Confidence 34 789999999999999999876656666655543 56788998877777777777777765 346788899999999
Q ss_pred chHHHHHHHHHHHccCCC-hHHH---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCH
Q 002235 255 STAVIYECAGTLVSLSSA-PTAI---RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNL 330 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~~~-~~~l---~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~ 330 (949)
+++|+..|+.++..+... |..+ +.....++..+. +-+.=.+...|+.|.........-.......+...|.+.|.
T Consensus 192 dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~-e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~ 270 (746)
T PTZ00429 192 NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP-ECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNP 270 (746)
T ss_pred CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCH
Confidence 999999999999998532 3323 233344444442 33444566677776443222222334445556667788899
Q ss_pred HHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCC
Q 002235 331 DIRRKTLDIVLELITPRN---INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDS 407 (949)
Q Consensus 331 ~Ir~~aL~lL~~l~~~~N---v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~ 407 (949)
.|-..|+.+++.+.+..+ +..++..+..=+..- . ..+.+.|-.+++.|..+..++|......++.+.-...|.
T Consensus 271 AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~---ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp 346 (746)
T PTZ00429 271 AVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-S---RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDP 346 (746)
T ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-h---CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCc
Confidence 999999999999886433 333333232222222 1 235689999999999999999877665555554444443
Q ss_pred CcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc-HHHHHHHHHHHh
Q 002235 408 NVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE-VENGIATIKQCL 478 (949)
Q Consensus 408 ~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~-~~~~~~~i~~~l 478 (949)
.++....+..+..+.. ++--+.++..|.++..+.. .+.++.++-.+|..+...+. ...+++.+.+++
T Consensus 347 -~yIK~~KLeIL~~Lan--e~Nv~~IL~EL~eYa~d~D-~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll 414 (746)
T PTZ00429 347 -PFVKLEKLRLLLKLVT--PSVAPEILKELAEYASGVD-MVFVVEVVRAIASLAIKVDSVAPDCANLLLQIV 414 (746)
T ss_pred -HHHHHHHHHHHHHHcC--cccHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHh
Confidence 3566666776666643 3334556666666665532 34555555555554443332 233444443333
No 20
>PRK09687 putative lyase; Provisional
Probab=99.23 E-value=1.8e-09 Score=118.48 Aligned_cols=246 Identities=12% Similarity=0.090 Sum_probs=181.0
Q ss_pred hcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhh-HHHHHHHHHHh-
Q 002235 62 VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEI-IEPLIPSVLQN- 139 (949)
Q Consensus 62 l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el-~~~l~~~I~~~- 139 (949)
++.++|...|.-+-..+..+ .+ ++. ...+.+-++|+|+.+|..|.+.|+.+..+.- .+...+.+...
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~---~~-----~~~---~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLR---GG-----QDV---FRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhc---Cc-----chH---HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 34678888887776665554 21 233 2334555789999999999999999997542 23455666655
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCh
Q 002235 140 LQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGE 219 (949)
Q Consensus 140 L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p 219 (949)
+.|+++.||+.|+.+++++.. ..+...+++.+.+...+ .|.|+.|++.|+.+|..+....+++.|...++ ..++
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~--~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~ 173 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCK--KNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNG 173 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccc--cccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCH
Confidence 799999999999999999865 33322334445554444 78899999999999999988888999888876 4677
Q ss_pred hHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHH
Q 002235 220 LLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIV 299 (949)
Q Consensus 220 ~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~ia 299 (949)
+.....+..|+.+...+| ...+.|...|...+..|+.+|+..|..+.. + .++..+++.+ .++ .+++-+
T Consensus 174 ~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~----~av~~Li~~L-~~~--~~~~~a 241 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALRKD-K----RVLSVLIKEL-KKG--TVGDLI 241 (280)
T ss_pred HHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHccCC-h----hHHHHHHHHH-cCC--chHHHH
Confidence 888888888888733333 466778888899999999999999999865 3 3556666766 333 488888
Q ss_pred HHHHHHHHhhChhhHHHHHHhheeccC-CCCHHHHHHHHHHHHh
Q 002235 300 LDRLNELRSSHRDIMVDLIMDVLRALN-SPNLDIRRKTLDIVLE 342 (949)
Q Consensus 300 L~~L~~l~~~~p~~l~~~~~~il~~L~-d~d~~Ir~~aL~lL~~ 342 (949)
+..|.++.. |..+. .+.+++. ++|..|++++++.+-+
T Consensus 242 ~~ALg~ig~--~~a~p----~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 242 IEAAGELGD--KTLLP----VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHhcCC--HhHHH----HHHHHHhhCCChhHHHHHHHHHhc
Confidence 888888854 44433 3455564 7899999999987753
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.23 E-value=3.8e-07 Score=119.53 Aligned_cols=433 Identities=15% Similarity=0.127 Sum_probs=268.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCC--CCC-------CchhHHHHHhhcCCC---CcchhHHHHHHHHHHhhcCC
Q 002235 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNG--ETL-------PQLFITIVRYVLPSE---DHTIQKLLLLYLEIIDKTDA 86 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~~aL~kli~l~~~G--~d~-------s~lf~~Vik~l~~s~---d~~lKrL~YL~l~~~~~~~~ 86 (949)
+.-+-..|++++..-|..+.+-|-++...+ +.. ....+..+. ++.+. |..+++..-.++..++..++
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~-lL~~gsk~d~~L~~~Av~AL~nLs~~~e 179 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWD-QLQPGNKQDKVVEGLLTGALRNLCGSTD 179 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHH-HHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence 334667888888888888887777776665 221 344556666 33443 33455565566666654432
Q ss_pred CCCCCchHHH---HHHHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhH-----HHHHHHHHHhccC-CChHHHHHHHHHH
Q 002235 87 KGRVLPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEII-----EPLIPSVLQNLQH-RHPYIRRNAILAV 155 (949)
Q Consensus 87 d~~l~~e~iL---v~NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~-----~~l~~~I~~~L~d-~~pyVRk~A~lal 155 (949)
+. ...++ ++-.+.+=|.++|+..+-.|..+|.++.. ++.. ...+|.+.++|.+ .++.||..|+.|+
T Consensus 180 -n~--~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL 256 (2102)
T PLN03200 180 -GF--WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256 (2102)
T ss_pred -ch--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHH
Confidence 21 11111 44567777788999999999888766632 2222 2357888899965 6779999999999
Q ss_pred HHHhcCCCCcccccc------hHHHHHHHHcc--------CCChhHHHHHHHHHHhcchhh--HHHHHHHHHhh------
Q 002235 156 MAIYKLPQGEQLLVD------APEMIEKVLST--------EQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDR------ 213 (949)
Q Consensus 156 ~ki~~l~~~~~li~~------~~e~l~~~L~~--------d~d~~v~~~Al~~L~~i~~~~--ai~~L~~~l~~------ 213 (949)
..|.. .+++.... .+.++ +++.. +.+...+.+|..+|..++.+. .+.+|.+.+..
T Consensus 257 ~nLAs--~s~e~r~~Iv~aGgIp~LI-~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~ 333 (2102)
T PLN03200 257 EALSS--QSKEAKQAIADAGGIPALI-NATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAP 333 (2102)
T ss_pred HHHhc--CCHHHHHHHHHCCCHHHHH-HHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHH
Confidence 99988 65543321 12333 33421 123456899999999877542 12223222110
Q ss_pred --------------cCccChhHHH----HHHHHHHHhhhc-------------------CchhHH-----HHHHHHHHHH
Q 002235 214 --------------VSEWGELLQM----VVLELIRKVCRT-------------------NKGEKG-----KYIKIIISLL 251 (949)
Q Consensus 214 --------------i~~~~p~~q~----~il~ll~~~~~~-------------------~p~~~~-----~li~~L~~lL 251 (949)
+...++-.+. .+...|.++++. +|..+. .-++.|..+|
T Consensus 334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL 413 (2102)
T PLN03200 334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI 413 (2102)
T ss_pred HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence 0000110010 011222222221 111111 1234566777
Q ss_pred cCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh---hHH--HHHHh
Q 002235 252 NAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD---IMV--DLIMD 320 (949)
Q Consensus 252 ~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~---~l~--~~~~~ 320 (949)
...+.-++-.++.+|..+... ++..+. .+..++++| .+++.+++..++..|..|+..+++ .+. .-+..
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 778888999999999888754 332222 345677776 566789999999999988865443 222 23555
Q ss_pred heeccCCCCHHHHHHHHHHHHhhcC-CCcHHHHHHH--HHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHH
Q 002235 321 VLRALNSPNLDIRRKTLDIVLELIT-PRNINEVVLM--LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVV 397 (949)
Q Consensus 321 il~~L~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~~--L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l 397 (949)
+..+|.+++..+++.|...|..++. +.|+..++.. ...-+..... ..+.+.+..++.+|..+...- ....+
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~---sgd~~~q~~Aa~AL~nLi~~~---d~~~I 566 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK---NGGPKGQEIAAKTLTKLVRTA---DAATI 566 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhcc---chhHH
Confidence 7788899999999999999999884 5566666632 1112222222 346789999999999987542 22455
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHhCcc---c-----HHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc
Q 002235 398 HLLMDFLGDSNVASAIDVIIFVREIIEMNPK---L-----RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE 466 (949)
Q Consensus 398 ~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~---~-----~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~ 466 (949)
..+..+|...+......++..+..++..... . ...++..|.+.+++ ..+.++..++|+|+.|+..-.+
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChH
Confidence 7788888777766666677777666542221 1 12478899999987 4578999999999999875544
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.81 E-value=7.6e-06 Score=107.71 Aligned_cols=383 Identities=15% Similarity=0.141 Sum_probs=264.3
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCC------CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHH---HH
Q 002235 28 GNDVPAKVDAMKKAIMLLLNGETL------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL---IC 98 (949)
Q Consensus 28 s~~~~~k~~aL~kli~l~~~G~d~------s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iL---v~ 98 (949)
..+.+.+.++.+.|-++...+.+. ..+....++++ .+.+...++.+.-.+..++..+++. -..+. ++
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~A~~~L~nLa~~nden---r~aIieaGaI 490 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEYAVALLAILTDEVDES---KWAITAAGGI 490 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHH---HHHHHHCCCH
Confidence 344667778887777766555442 34678888855 7788888988877777775433211 01222 34
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCc--h---hhH--HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE--T---EII--EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA 171 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~--~---el~--~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~ 171 (949)
..|.+=|.++++.+|-.|..+|+++.. + .++ ...+|.+.+.|.+.++-+++.|+-++.++... .+++.+
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~I--- 566 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADAATI--- 566 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cchhHH---
Confidence 567778889999999999999999873 1 233 13577888999999999999999999999772 233333
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcch--------------hhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCc
Q 002235 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQ--------------DRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK 237 (949)
Q Consensus 172 ~e~l~~~L~~d~d~~v~~~Al~~L~~i~~--------------~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p 237 (949)
+.++ .+| ...|+.++..++..|..+.. +.+++.|..+++ ..++-.|-.....+..++..++
T Consensus 567 ~~Lv-~LL-lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 567 SQLT-ALL-LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS---SSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred HHHH-HHh-cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCh
Confidence 3344 334 45667777778877755421 125677777765 3456778888999999988776
Q ss_pred hhHH-----HHHHHHHHHHcCCchHHHHHHHHHHHccCCC--hHH----HHH-HHHHHHHHHccCCchHHHHHHHHHHHH
Q 002235 238 GEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTA----IRA-AANTYSQLLLSQSDNNVKLIVLDRLNE 305 (949)
Q Consensus 238 ~~~~-----~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~~----l~~-~a~~li~lll~~~d~nvr~iaL~~L~~ 305 (949)
.... ..+..+..+|++.+..|..+||++|.++... +.. ++. ++.++++++ +++|..++-.++..|..
T Consensus 642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALAN 720 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHH
Confidence 6433 3467888899999999999999999988632 211 221 467788877 67888999999999999
Q ss_pred HHhhChhh---H-HHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHH----------HHHHHHHHhccCCccCC
Q 002235 306 LRSSHRDI---M-VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVL----------MLKKEVVKTQSGELEKN 371 (949)
Q Consensus 306 l~~~~p~~---l-~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~----------~L~kel~~~~~~~~d~~ 371 (949)
+....... . ...+.-+.++|.+.+...|+.|...|..++....+++++. .|...|. .+ |-+
T Consensus 721 Ll~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~-~~----~~~ 795 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN-ST----DLD 795 (2102)
T ss_pred HHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh-cC----Ccc
Confidence 88643211 1 2234557778889999999999999999999988888442 2222222 11 112
Q ss_pred HHHHHHHHHHHHHhHcc-------CcccH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc
Q 002235 372 GEYRQMLIQAIHSCAIK-------FPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL 429 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~k-------f~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~ 429 (949)
.---.++.+++..++.. +|+++ +.-++.|+.+|..+.+.+.+.++..+..+.+-+|..
T Consensus 796 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~ 865 (2102)
T PLN03200 796 SSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVV 865 (2102)
T ss_pred hhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhH
Confidence 22223477777777652 34433 134677888898888888888999988888766653
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.6e-06 Score=95.86 Aligned_cols=352 Identities=16% Similarity=0.232 Sum_probs=231.9
Q ss_pred HHHHHHHHhhc-CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc----hHHHHHHHHccCCChh
Q 002235 112 IRGVTLRFLCR-LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD----APEMIEKVLSTEQDPS 186 (949)
Q Consensus 112 iR~~ALr~L~~-I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~----~~e~l~~~L~~d~d~~ 186 (949)
.-|+|.-++|- ..+....+.+.+.|..|+.|++.-||--|+.++|.|.+ ....-+.. +.+.+-+ |..|+|.+
T Consensus 64 LiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK--v~k~~v~~~Fn~iFdvL~k-lsaDsd~~ 140 (675)
T KOG0212|consen 64 LIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAK--VAKGEVLVYFNEIFDVLCK-LSADSDQN 140 (675)
T ss_pred HHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHH--HhccCcccchHHHHHHHHH-HhcCCccc
Confidence 34555554442 23444788899999999999999999999999999998 44443333 2344545 45899999
Q ss_pred HHHHHHHHHHhcc----hhhH----HHHHHHHHhh-cCccChhHHHHHHHHHHHhhhcCch----hHHHHHHHHHHHHcC
Q 002235 187 AKRNAFLMLFTCD----QDRA----INYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKG----EKGKYIKIIISLLNA 253 (949)
Q Consensus 187 v~~~Al~~L~~i~----~~~a----i~~L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~p~----~~~~li~~L~~lL~s 253 (949)
|+..| .+|..+- -+++ ++.++.+++. +...+|.....+++-+.-+-..-+- ....+++-|...|..
T Consensus 141 V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 141 VRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred cccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC
Confidence 98766 4444432 2222 4555555543 5566888889998888776433222 124567788888899
Q ss_pred CchHHHHHHHHHHHc----cCCChHHH--HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHH----HHHhhee
Q 002235 254 PSTAVIYECAGTLVS----LSSAPTAI--RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD----LIMDVLR 323 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~----l~~~~~~l--~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~----~~~~il~ 323 (949)
+++.|+--|-.++.. +.+.|..+ ...+..++..+ .++++.++..||-.|.++.+..|..+-. ....++.
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILP 298 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhccc
Confidence 999998766665544 33444321 12344444444 5788999999999999999988775544 4455888
Q ss_pred ccCCCCH-HHHHHHH---HHHHhhcCCCcH------HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCccc-
Q 002235 324 ALNSPNL-DIRRKTL---DIVLELITPRNI------NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV- 392 (949)
Q Consensus 324 ~L~d~d~-~Ir~~aL---~lL~~l~~~~Nv------~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~- 392 (949)
|+.+.+. +|+-.|- ..+++++++.-- ..+++.|.+++.. ...+-|..+.+=|+.+-.|+|..
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-------~~~~tri~~L~Wi~~l~~~~p~ql 371 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-------DREETRIAVLNWIILLYHKAPGQL 371 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHHhhCcchh
Confidence 9988877 4665544 346666655433 3888888877653 35789999999999999999965
Q ss_pred ---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHhcccchHH-HHHHHhhhcccCCCCCCc
Q 002235 393 ---ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM--NPKLRVSIITRLLDNFYQIRAAR-VCTCALWIIGEYCQSLSE 466 (949)
Q Consensus 393 ---~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~--~p~~~~~~l~~L~~~l~~i~~~~-v~~~~lwiLGEy~~~~~~ 466 (949)
.+.+..+|+.-|.|..+.+...++..+..|... .|..+ +.+..|.+.+.. ++. +..+...|+.+-|-.. +
T Consensus 372 ~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~-~fl~sLL~~f~e--~~~~l~~Rg~lIIRqlC~lL-~ 447 (675)
T KOG0212|consen 372 LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLR-KFLLSLLEMFKE--DTKLLEVRGNLIIRQLCLLL-N 447 (675)
T ss_pred hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHH-HHHHHHHHHHhh--hhHHHHhhhhHHHHHHHHHh-C
Confidence 478999999999999888888888888888752 34333 345555555532 111 2333333343333333 2
Q ss_pred HHHHHHHHHHHhC
Q 002235 467 VENGIATIKQCLG 479 (949)
Q Consensus 467 ~~~~~~~i~~~l~ 479 (949)
++...+.+...+.
T Consensus 448 aE~IYr~~a~ILe 460 (675)
T KOG0212|consen 448 AERIYRSIADILE 460 (675)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 24
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.76 E-value=5.3e-06 Score=94.23 Aligned_cols=368 Identities=15% Similarity=0.199 Sum_probs=210.7
Q ss_pred CCCCchH--HHHHHHHHhhcCCCCHHHHH---HHHHHhhcCCchhhHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHhcC
Q 002235 88 GRVLPEM--ILICQNLRNNLQHPNEYIRG---VTLRFLCRLNETEIIEPLIPSVLQNLQHRHP-YIRRNAILAVMAIYKL 161 (949)
Q Consensus 88 ~~l~~e~--iLv~NsL~KDL~~~N~~iR~---~ALr~L~~I~~~el~~~l~~~I~~~L~d~~p-yVRk~A~lal~ki~~l 161 (949)
|++-||- .=+-=+|.|-+||.|++.|- .|++-|+.+.+.-+.. ...|.+-+....| .||-.|+-++.++..
T Consensus 55 ge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~--tssiMkD~~~g~~~~~kp~AiRsL~~Vid- 131 (898)
T COG5240 55 GELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG--TSSIMKDLNGGVPDDVKPMAIRSLFSVID- 131 (898)
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH--HHHHHHhhccCCccccccHHHHHHHHhcC-
Confidence 4443442 23334788999999999885 6899999988766543 3455666666666 889899988887755
Q ss_pred CCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh--HH-HHHHH------HHhh----------cCccChhHH
Q 002235 162 PQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--AI-NYLLT------HVDR----------VSEWGELLQ 222 (949)
Q Consensus 162 ~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--ai-~~L~~------~l~~----------i~~~~p~~q 222 (949)
.+.++++-.++.+.. -++.+.+..+|+..-|++-|.. -+ +++-. -+.+ -+..+|..|
T Consensus 132 ---~~tv~~~er~l~~a~-Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isq 207 (898)
T COG5240 132 ---GETVYDFERYLNQAF-VSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQ 207 (898)
T ss_pred ---cchhhhHHHHhhhhc-cccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHH
Confidence 556777767776655 5777888889998888876653 11 12211 0111 135689999
Q ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC-CChHHHHHHHHHHHHHHccCCchHHHHHHHH
Q 002235 223 MVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 223 ~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~-~~~~~l~~~a~~li~lll~~~d~nvr~iaL~ 301 (949)
-..+.++.+.-|.+.-...++++.+..-+.-+|.---.+-++.+..+- .+++.+ ....+++.--+++.---|..-+-+
T Consensus 208 YHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~-~q~rpfL~~wls~k~emV~lE~Ar 286 (898)
T COG5240 208 YHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQAL-LQLRPFLNSWLSDKFEMVFLEAAR 286 (898)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHH-HHHHHHHHHHhcCcchhhhHHHHH
Confidence 999999999877665433344443333221122211222344444432 233333 344555555455544556677777
Q ss_pred HHHHHHhhC--hhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHhccCCccC
Q 002235 302 RLNELRSSH--RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI---------TPRNINEVVLMLKKEVVKTQSGELEK 370 (949)
Q Consensus 302 ~L~~l~~~~--p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~---------~~~Nv~~Iv~~L~kel~~~~~~~~d~ 370 (949)
.+..++.++ |+.+++-+..+-..|+.+....|--|+.+|-.++ ...|++.++. |.
T Consensus 287 ~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--------------d~ 352 (898)
T COG5240 287 AVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--------------DE 352 (898)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--------------cc
Confidence 777776654 6777776666666688888888888999988653 2235555443 22
Q ss_pred CHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhccc------
Q 002235 371 NGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQI------ 444 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i------ 444 (949)
+..+...+|.++-..+. .+..+..++.+..++.|-.+....-++.+++.+.-.+|..+..++.-|...|-+-
T Consensus 353 Nr~IstyAITtLLKTGt--~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK 430 (898)
T COG5240 353 NRTISTYAITTLLKTGT--EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFK 430 (898)
T ss_pred cccchHHHHHHHHHcCc--hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHH
Confidence 33333444444433321 1233445555555554433222222344555555555655555555444444221
Q ss_pred -----------c-hHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHhCC
Q 002235 445 -----------R-AARVCTCALWIIGEYCQSLSEVENGIATIKQCLGE 480 (949)
Q Consensus 445 -----------~-~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~ 480 (949)
+ .|+-+-.++-.|.+|.+..+-++-.+| |...+|+
T Consensus 431 ~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vr-IL~iLG~ 477 (898)
T COG5240 431 KYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVR-ILGILGR 477 (898)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHH-HHHHhcc
Confidence 0 245555666666666665554433333 3345554
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.62 E-value=5e-05 Score=90.54 Aligned_cols=257 Identities=16% Similarity=0.229 Sum_probs=163.5
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002235 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (949)
Q Consensus 126 ~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li-----~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~ 200 (949)
.++.+...+.+.++|.|++|.||+-|+.++.++.. .....+ .+....+-.+| .+.|..|...|..+|..+..
T Consensus 72 ~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~--~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR--HSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--CCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhC
Confidence 34477888899999999999999999999999877 444322 12334444555 88999999999999998875
Q ss_pred hhH-HHHH-----HHHHhhc-CccChhHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCchHHHHHHHHHHHc
Q 002235 201 DRA-INYL-----LTHVDRV-SEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAVIYECAGTLVS 268 (949)
Q Consensus 201 ~~a-i~~L-----~~~l~~i-~~~~p~~q~~il~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV~~Eaa~~l~~ 268 (949)
+.. .+.+ ...+..+ ...++..++.+++++..++..++..... +++.+...|.+.+.-|+..|+.++..
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE 228 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 542 2222 3333332 2347788999999999998877664433 56667777778677789999999988
Q ss_pred cCCChHHHHH-----HHHHHHHHHcc-CCch---HHHHHHH-HHHHHHHhhChhhHHH----HHHhheeccCCCCHHHHH
Q 002235 269 LSSAPTAIRA-----AANTYSQLLLS-QSDN---NVKLIVL-DRLNELRSSHRDIMVD----LIMDVLRALNSPNLDIRR 334 (949)
Q Consensus 269 l~~~~~~l~~-----~a~~li~lll~-~~d~---nvr~iaL-~~L~~l~~~~p~~l~~----~~~~il~~L~d~d~~Ir~ 334 (949)
+...+...+. ....+..++.. ..|| .+-..+. .-...++..+|.-+-. ....++.++.+.|..++-
T Consensus 229 La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~ 308 (503)
T PF10508_consen 229 LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIRE 308 (503)
T ss_pred HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 8655443332 33445555533 2333 2222222 3334454434433322 222345667789999999
Q ss_pred HHHHHHHhhcCCCcHHHHH--------HHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc
Q 002235 335 KTLDIVLELITPRNINEVV--------LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (949)
Q Consensus 335 ~aL~lL~~l~~~~Nv~~Iv--------~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k 388 (949)
-|++.+..+|+..-=..++ ...++.+..+.. ....++|...++++..+-..
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~---~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIK---SGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHhc
Confidence 9999999998655444444 112222222222 24568999999999888543
No 26
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.8e-05 Score=90.72 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHhccCChhHH
Q 002235 560 AVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIR 633 (949)
Q Consensus 560 ~~l~~~l~kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~~~~~id~d~~~r~~~~l~~l~~~~~~~~ 633 (949)
+...++|+|+...+. .++.....+|.+++. .-|+..|||++.+++.+.+.+....
T Consensus 484 aaAv~alaKfg~~~~----------~l~~sI~vllkRc~~---------D~DdevRdrAtf~l~~l~~~~~~l~ 538 (865)
T KOG1078|consen 484 AAAVSALAKFGAQDV----------VLLPSILVLLKRCLN---------DSDDEVRDRATFYLKNLEEKDDVLN 538 (865)
T ss_pred HHHHHHHHHHhcCCC----------CccccHHHHHHHHhc---------CchHHHHHHHHHHHHHhhhhhhhhc
Confidence 777888999973222 233344444444442 1156689999999999975444433
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.57 E-value=0.00011 Score=87.54 Aligned_cols=253 Identities=17% Similarity=0.269 Sum_probs=168.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchh-h------HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc--
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETE-I------IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL-- 167 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~e-l------~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l-- 167 (949)
....+++=|+||++.||.+|++.++++.... . -..+++.|..|+.|++..|.+.|+-++.++.+ ..+.+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~ 155 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQ 155 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHH
Confidence 4477888999999999999999999974322 1 14578999999999999999999999999988 44332
Q ss_pred c-c-chHHHHHHHHccCCChhHHHHHHHHHHhcchhh--HHH------HHHHHHhhcCccChhHHHHHHHHHHHhhhcCc
Q 002235 168 L-V-DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--AIN------YLLTHVDRVSEWGELLQMVVLELIRKVCRTNK 237 (949)
Q Consensus 168 i-~-~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--ai~------~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p 237 (949)
+ + .....+..++ ...|..++..++.++.++.... +.. .+..+++.+...|...|...++++..++.. +
T Consensus 156 l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~ 233 (503)
T PF10508_consen 156 LFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-P 233 (503)
T ss_pred HhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-h
Confidence 1 1 1234555644 4447788888888888875332 222 344455566678899999999999999883 3
Q ss_pred hh-----HHHHHHHHHHHHcCC------chHHHHHHHHHHHccCC-ChHHHHH----HHHHHHHHHccCCchHHHHHHHH
Q 002235 238 GE-----KGKYIKIIISLLNAP------STAVIYECAGTLVSLSS-APTAIRA----AANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 238 ~~-----~~~li~~L~~lL~s~------s~aV~~Eaa~~l~~l~~-~~~~l~~----~a~~li~lll~~~d~nvr~iaL~ 301 (949)
.. ...+++.|..++... +...+...++.+.++.. .|..+.. ....+.++ ..+.|++.+-+|++
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~-~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSM-LESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-hCCCChhHHHHHHH
Confidence 32 223455666666543 12233444455555543 3333322 22233333 46889999999999
Q ss_pred HHHHHHhh----------ChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc---CCCcHHHHHH
Q 002235 302 RLNELRSS----------HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI---TPRNINEVVL 354 (949)
Q Consensus 302 ~L~~l~~~----------~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~ 354 (949)
++..|+.. ++..+......+..........+|.++|+.+..+. +++.-+++..
T Consensus 313 tlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~ 378 (503)
T PF10508_consen 313 TLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILS 378 (503)
T ss_pred HHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 99988753 23333444555666677788889999998888772 2334455544
No 28
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=8.8e-05 Score=88.04 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=167.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHH-HHH
Q 002235 21 EIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL-ICQ 99 (949)
Q Consensus 21 eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iL-v~N 99 (949)
|.-+...|++--+|+-+-.-+..++---+ .+++-+++-+-..=++.-+-.+-++++.+....+ +||+= +-+
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~q---dvllLltNslknDL~s~nq~vVglAL~alg~i~s-----~Emardlap 145 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDERQ---DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS-----PEMARDLAP 145 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccch---HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC-----HHHhHHhhH
Confidence 44457888887776644333333333333 3444444422122234556667777777655544 78843 456
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchH-----
Q 002235 100 NLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP----- 172 (949)
Q Consensus 100 sL~KDL~~~N~~iR~~ALr~L~~I--~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~----- 172 (949)
-+-+=|+|++|+||-=|+-++-++ +.|++.+.+.+.-++.|.++|+-|=-+++.-+..+.+ .+|+.+..+.
T Consensus 146 eVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~--~~~~~l~~fr~l~~~ 223 (866)
T KOG1062|consen 146 EVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCK--ISPDALSYFRDLVPS 223 (866)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 777888999999999998888887 5899999999999999999999999998888888988 7776654443
Q ss_pred --HHHHHHHc----------cCCChhHHHHHHHHHHhcchhh--HHHHHHHHHhhc----C-------------------
Q 002235 173 --EMIEKVLS----------TEQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDRV----S------------------- 215 (949)
Q Consensus 173 --e~l~~~L~----------~d~d~~v~~~Al~~L~~i~~~~--ai~~L~~~l~~i----~------------------- 215 (949)
.+++++.. .=+||..+...+.+|.-+.+++ +-+.+..++.++ .
T Consensus 224 lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~ 303 (866)
T KOG1062|consen 224 LVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMD 303 (866)
T ss_pred HHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHh
Confidence 33444211 1148888888887777665543 222222222221 0
Q ss_pred -ccChhHHHHHHHHHHHhhh-------------------cCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH
Q 002235 216 -EWGELLQMVVLELIRKVCR-------------------TNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA 275 (949)
Q Consensus 216 -~~~p~~q~~il~ll~~~~~-------------------~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~ 275 (949)
..++-+.+..+.+|+|+.. .+|...++=-..+..+|+..+++++..|-...+.+.+.. -
T Consensus 304 I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~-N 382 (866)
T KOG1062|consen 304 IRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES-N 382 (866)
T ss_pred ccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-c
Confidence 1223334444555554422 234444444455666666666666666666666664422 2
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 002235 276 IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (949)
Q Consensus 276 l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~ 309 (949)
++.++..++..|-+ .|+..|--....+..++.+
T Consensus 383 v~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 383 VRVMVKELLEFLES-SDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHh
Confidence 44556666665533 3666665555555555543
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0013 Score=81.60 Aligned_cols=407 Identities=15% Similarity=0.203 Sum_probs=238.0
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHH
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILI 97 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv 97 (949)
.+.++-..|-++|...+.+|=+ .+-....-.++..++.++.. .++|...|+|+-..+..+..
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~-~l~~~~~~~~~l~~L~~i~~---~~~~p~~Rq~aaVl~Rkl~~-------------- 66 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEE-ALETLAKTEPLLPALAHILA---TSADPQVRQLAAVLLRKLLT-------------- 66 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHH-HHHHhhcccchHHHHHHHHh---cCCChHHHHHHHHHHHHHHH--------------
Confidence 4566666777777766554433 22222223335566666554 46788888777665544310
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
. +. .+ .+.+.-+.+-..+..++.+ +.+.||++-+-.+..|.+. --|+ .||+++.
T Consensus 67 --~----------~w--------~~-l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~-~l~e---~WPell~ 121 (1075)
T KOG2171|consen 67 --K----------HW--------SR-LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARN-DLPE---KWPELLQ 121 (1075)
T ss_pred --H----------Hh--------hc-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh-cccc---chHHHHH
Confidence 0 11 11 1245556666666666655 6889999988888888883 2222 5888775
Q ss_pred HHH--ccCCChhHHHHHHHHHHhcchhh------HHHHHHHHHhh-cCc-cChhHHHHHHHHHHHhhhcC---chhHHHH
Q 002235 177 KVL--STEQDPSAKRNAFLMLFTCDQDR------AINYLLTHVDR-VSE-WGELLQMVVLELIRKVCRTN---KGEKGKY 243 (949)
Q Consensus 177 ~~L--~~d~d~~v~~~Al~~L~~i~~~~------ai~~L~~~l~~-i~~-~~p~~q~~il~ll~~~~~~~---p~~~~~l 243 (949)
-+. .++.|+..+..|+..|..+-..- -++-+..++.+ +.+ .+| ..+..++.+..++... +.+..++
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHH
Confidence 321 36778888999988888764221 12334445544 333 344 6777777777765543 4444443
Q ss_pred -------HHHHHHHHcCCchHHHHHHHHHHHccC-CChHHHHHHHHHHHHHHc-----cCCchHHHHHHHHHHHHHHhhC
Q 002235 244 -------IKIIISLLNAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLL-----SQSDNNVKLIVLDRLNELRSSH 310 (949)
Q Consensus 244 -------i~~L~~lL~s~s~aV~~Eaa~~l~~l~-~~~~~l~~~a~~li~lll-----~~~d~nvr~iaL~~L~~l~~~~ 310 (949)
+..+...++..+....-++-.++..+. ..|..++.....++++-+ ++-++.+|..||+.|..++..-
T Consensus 201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 344444555556655555555555553 235555544444444322 2346778999998888776543
Q ss_pred -------hhhHHHHHHhheecc---C----------------CCCHHHHHHHHHHHHh-hcCCCcHHHHHHHHHHHHHHh
Q 002235 311 -------RDIMVDLIMDVLRAL---N----------------SPNLDIRRKTLDIVLE-LITPRNINEVVLMLKKEVVKT 363 (949)
Q Consensus 311 -------p~~l~~~~~~il~~L---~----------------d~d~~Ir~~aL~lL~~-l~~~~Nv~~Iv~~L~kel~~~ 363 (949)
+....+.+..++.+. . +.+..+...+|+.+.. |+-+.=..-+++.+ ...
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l----~~~ 356 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEAL----EAM 356 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHH----HHH
Confidence 333333333333221 1 1144567777776653 44444444444433 333
Q ss_pred ccCCccCCHHHHHHHHHHHHHhHccCcc----cHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh-CcccH----HHHH
Q 002235 364 QSGELEKNGEYRQMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM-NPKLR----VSII 434 (949)
Q Consensus 364 ~~~~~d~~~e~r~~lv~aI~~la~kf~~----~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~-~p~~~----~~~l 434 (949)
.. ..+..+|..++-+|+.+++--+. ..+.+++..++.|+|..+.++..+..++.++-.. .|+.+ +.++
T Consensus 357 l~---S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 357 LQ---STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred hc---CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 33 34789999999999998864432 3568889999999999999999999999988653 35543 4455
Q ss_pred HHHHHHhcccchHHHHHHHhhhcc---cCCCCCCcHHHHHHHHHH
Q 002235 435 TRLLDNFYQIRAARVCTCALWIIG---EYCQSLSEVENGIATIKQ 476 (949)
Q Consensus 435 ~~L~~~l~~i~~~~v~~~~lwiLG---Ey~~~~~~~~~~~~~i~~ 476 (949)
..|+..+++-..+++...++-.+= |.++.. -+.-|++.|-.
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLME 477 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH
Confidence 566777777666776444443333 444432 23445555544
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00039 Score=79.71 Aligned_cols=373 Identities=13% Similarity=0.147 Sum_probs=232.2
Q ss_pred HhCCCCC----CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHH---H
Q 002235 45 LLNGETL----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVT---L 117 (949)
Q Consensus 45 ~~~G~d~----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~A---L 117 (949)
+.+|.+- ....+.|+. ++..+|..+|--+.-.+-.++|.. .|+...-.=.+-..+.|=..+++..+||.| -
T Consensus 72 iaLg~~~~~Y~~~iv~Pv~~-cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLd 149 (675)
T KOG0212|consen 72 IALGIKDAGYLEKIVPPVLN-CFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLD 149 (675)
T ss_pred HHhccccHHHHHHhhHHHHH-hccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHHHH
Confidence 4456543 456777886 887777777654443333344432 232211111233566777788888999877 3
Q ss_pred HHhhcCCchhh----HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-cc---ccchHHHHHHHHccCCChhHHH
Q 002235 118 RFLCRLNETEI----IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QL---LVDAPEMIEKVLSTEQDPSAKR 189 (949)
Q Consensus 118 r~L~~I~~~el----~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~l---i~~~~e~l~~~L~~d~d~~v~~ 189 (949)
|.+--|..++- ++.++|-++.-+...+|+.|.--+-=++.++.. .+ +. +|++.+-+-++| +|+++.|+.
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~L-sD~s~eVr~ 226 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNML-SDSSDEVRT 226 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHh-cCCcHHHHH
Confidence 45555554443 677889999999999999998877777777662 22 22 344445555666 888888875
Q ss_pred HHHHHH----Hhcchhh-HHHH--HHH-HHhhcCccChhHHHHHHHHHHHhhhcCchhH----HHHHHHHHHHHcCCchH
Q 002235 190 NAFLML----FTCDQDR-AINY--LLT-HVDRVSEWGELLQMVVLELIRKVCRTNKGEK----GKYIKIIISLLNAPSTA 257 (949)
Q Consensus 190 ~Al~~L----~~i~~~~-ai~~--L~~-~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~----~~li~~L~~lL~s~s~a 257 (949)
-+=.+| .+|+.+- .+++ ... +........|+.|..++.-+..+.+..|... ..++..+.+++.++..+
T Consensus 227 ~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence 544444 4443221 1121 111 1233457889999999999998877655432 33344455555666565
Q ss_pred HHHHHHHHHH----ccCCChH-----HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHh----heec
Q 002235 258 VIYECAGTLV----SLSSAPT-----AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD----VLRA 324 (949)
Q Consensus 258 V~~Eaa~~l~----~l~~~~~-----~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~----il~~ 324 (949)
-.++++..+- .+-+.+. +.+... .+++..+++..-..|..+|+.+..+..++|.-+-.|... ++..
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii-~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEEIDYGSII-EVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchHHHH-HHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 4555555432 3322111 122333 344455567777899999999999999999766554444 4566
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHH
Q 002235 325 LNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFL 404 (949)
Q Consensus 325 L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL 404 (949)
|+|++..+-.++|+++..+|++.|-...++.+..-+.-|.. ...-.+....--|+++|... .++.+...+.++|
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e----~~~~l~~Rg~lIIRqlC~lL--~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE----DTKLLEVRGNLIIRQLCLLL--NAERIYRSIADIL 459 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh----hhHHHHhhhhHHHHHHHHHh--CHHHHHHHHHHHH
Confidence 89999999999999999999988876667666665555542 22334444444566666543 2456677777777
Q ss_pred hCCCc-ccHHHHHHHHHHHHHhCccc
Q 002235 405 GDSNV-ASAIDVIIFVREIIEMNPKL 429 (949)
Q Consensus 405 ~~~~~-~v~~e~i~~l~~ii~~~p~~ 429 (949)
....+ ..+..+|..+-.++-..||+
T Consensus 460 e~e~nl~FAstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 460 EREENLKFASTMVQALNTILLTSTEL 485 (675)
T ss_pred hccccchHHHHHHHHHHhhhcccHHH
Confidence 66544 35666788888887777774
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00062 Score=84.23 Aligned_cols=397 Identities=13% Similarity=0.158 Sum_probs=224.2
Q ss_pred HHHHHHHHHHhCCCCCC---chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHH
Q 002235 36 DAMKKAIMLLLNGETLP---QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYI 112 (949)
Q Consensus 36 ~aL~kli~l~~~G~d~s---~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~i 112 (949)
-.++|++.-+-.+-+-+ .+--.+..-+..-..+.+|+=.-=.+..+++..=++++ ||+ .+.+..-.+|+|+-.
T Consensus 59 Vl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-Pel---l~~L~q~~~S~~~~~ 134 (1075)
T KOG2171|consen 59 VLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-PEL---LQFLFQSTKSPNPSL 134 (1075)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-HHH---HHHHHHHhcCCCcch
Confidence 34555555544443321 22333333222234445544333333444444333355 564 256777889999999
Q ss_pred HHHHHHHhhcCC------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC-CCCcccc-------cchHHHHHHH
Q 002235 113 RGVTLRFLCRLN------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-PQGEQLL-------VDAPEMIEKV 178 (949)
Q Consensus 113 R~~ALr~L~~I~------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l-~~~~~li-------~~~~e~l~~~ 178 (949)
|-.|++.|+++. ..-.+..+.+-+.+++.|++.-||-.|+-|+..+... +.+++.+ |.....+..+
T Consensus 135 rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~ 214 (1075)
T KOG2171|consen 135 RESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEV 214 (1075)
T ss_pred hHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhh
Confidence 999999999874 2223446788888999998777999999999998872 1123333 3333344443
Q ss_pred HccCCChhHHHHHHHHHHhcchhhH---HHHHHHHHh---hc---CccChhHHHHHHHHHHHhhhcCch-------hHHH
Q 002235 179 LSTEQDPSAKRNAFLMLFTCDQDRA---INYLLTHVD---RV---SEWGELLQMVVLELIRKVCRTNKG-------EKGK 242 (949)
Q Consensus 179 L~~d~d~~v~~~Al~~L~~i~~~~a---i~~L~~~l~---~i---~~~~p~~q~~il~ll~~~~~~~p~-------~~~~ 242 (949)
+ .+.|......+|.+|.++....+ -++|..++. ++ ...++-..+.+|+++.-+...-|. ....
T Consensus 215 i-~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~ 293 (1075)
T KOG2171|consen 215 I-QDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHT 293 (1075)
T ss_pred h-hccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhcc
Confidence 3 66677677778888877643321 122222221 11 245555577888887766544332 2222
Q ss_pred HHHHHHHHH----------cC--------CchH-HHHHHHH-HHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHH
Q 002235 243 YIKIIISLL----------NA--------PSTA-VIYECAG-TLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDR 302 (949)
Q Consensus 243 li~~L~~lL----------~s--------~s~a-V~~Eaa~-~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~ 302 (949)
++..+..+. ++ ..+. +--+|.- .-++|++ +.+-...-..+.-++.++++--|.++|-.
T Consensus 294 lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 294 LVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred HHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 232222222 21 1122 2222322 2244443 22222334445556689999999999999
Q ss_pred HHHHHhhChhhHHHH----HHhheeccCCCCHHHHHHHHHHHHhhcCCC-------cHHHHHHHHHHHHHHhccCCccCC
Q 002235 303 LNELRSSHRDIMVDL----IMDVLRALNSPNLDIRRKTLDIVLELITPR-------NINEVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 303 L~~l~~~~p~~l~~~----~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~-------Nv~~Iv~~L~kel~~~~~~~~d~~ 371 (949)
|..++.--++.+..+ ..-++..|+|+.+-||--|+..+..+.+.= --+.+...|... .+ ...+
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~----ld--~~~~ 445 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL----LD--STQN 445 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH----hc--ccCc
Confidence 999987655555443 333567799999999999999999887631 111122222211 11 1234
Q ss_pred HHHHHHHHHHHHHhHccCc-ccHHHHHHHHHH----HHhCCC-cccHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHh
Q 002235 372 GEYRQMLIQAIHSCAIKFP-EVASTVVHLLMD----FLGDSN-VASAIDVIIFVREIIEMNP----KLRVSIITRLLDNF 441 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~-~~~~~~l~~L~~----lL~~~~-~~v~~e~i~~l~~ii~~~p----~~~~~~l~~L~~~l 441 (949)
..+...+..++-...+.-+ +....|++.|++ .|..++ .++...++..|..+..--. .-.+.++..|..+|
T Consensus 446 ~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 446 VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH
Confidence 5667777777765555444 334667776666 444444 4555567888887765321 12345677777777
Q ss_pred cccc
Q 002235 442 YQIR 445 (949)
Q Consensus 442 ~~i~ 445 (949)
....
T Consensus 526 ~n~~ 529 (1075)
T KOG2171|consen 526 QNAD 529 (1075)
T ss_pred hCCC
Confidence 5544
No 32
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00022 Score=84.33 Aligned_cols=280 Identities=13% Similarity=0.186 Sum_probs=192.2
Q ss_pred cCCCCHHHHHHHHH-HhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCC
Q 002235 105 LQHPNEYIRGVTLR-FLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQ 183 (949)
Q Consensus 105 L~~~N~~iR~~ALr-~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~ 183 (949)
|.+.++--..-|++ -++-|....=+..+.|+|.++...+|+-|||-..+=+.+... ..|++.=--....++.| .|+
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE--eqpdLALLSIntfQk~L-~Dp 120 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE--EQPDLALLSINTFQKAL-KDP 120 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh--cCCCceeeeHHHHHhhh-cCC
Confidence 34444444444443 344454555588899999999999999999998888888877 77776433356777777 999
Q ss_pred ChhHHHHHHHHHHhcchhhHHHHHHHHHh-hcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHH
Q 002235 184 DPSAKRNAFLMLFTCDQDRAINYLLTHVD-RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYEC 262 (949)
Q Consensus 184 d~~v~~~Al~~L~~i~~~~ai~~L~~~l~-~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Ea 262 (949)
|+.++..|+.+|..|+-.--.+.++..++ -+.+.+|+..-.+-..+.|+...+|++...+++++..+|...++-|+=.|
T Consensus 121 N~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsA 200 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSA 200 (968)
T ss_pred cHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999986642222222333 35678899888888888888888999999999999999999999999988
Q ss_pred HHHHHccCCC-hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh---Ch--------------------------h
Q 002235 263 AGTLVSLSSA-PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS---HR--------------------------D 312 (949)
Q Consensus 263 a~~l~~l~~~-~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~---~p--------------------------~ 312 (949)
+-++-.+-+. -+.+..--..++++|..-.++ =+.+.+..|.+-++. .| .
T Consensus 201 v~AF~evCPerldLIHknyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~ 279 (968)
T KOG1060|consen 201 VMAFEEVCPERLDLIHKNYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPY 279 (968)
T ss_pred HHHHHHhchhHHHHhhHHHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCc
Confidence 8888776543 122222234455555322111 144455555444431 12 1
Q ss_pred hHHHHHHh----heeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc
Q 002235 313 IMVDLIMD----VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (949)
Q Consensus 313 ~l~~~~~~----il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k 388 (949)
...+-..- .=.||.+.+.++-.-+..+.+.++-+.-+..|++.|.. +.+. +.+.|-.+.+.|+.++.+
T Consensus 280 ~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvr-LLrs-------~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 280 VNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVR-LLRS-------NREVQYVVLQNIATISIK 351 (968)
T ss_pred ccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHH-HHhc-------CCcchhhhHHHHHHHHhc
Confidence 11111111 22346678889999999999999988888888887775 3322 457899999999999988
Q ss_pred CcccHHHH
Q 002235 389 FPEVASTV 396 (949)
Q Consensus 389 f~~~~~~~ 396 (949)
-|....-+
T Consensus 352 ~~~lF~P~ 359 (968)
T KOG1060|consen 352 RPTLFEPH 359 (968)
T ss_pred chhhhhhh
Confidence 66544333
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.41 E-value=7.8e-06 Score=83.91 Aligned_cols=89 Identities=16% Similarity=0.328 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHhh--cCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-h-HHHHHHHHccCCC
Q 002235 109 NEYIRGVTLRFLC--RLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-A-PEMIEKVLSTEQD 184 (949)
Q Consensus 109 N~~iR~~ALr~L~--~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~-~-~e~l~~~L~~d~d 184 (949)
||.+|.+|+.+|| .++-|.++++..|.+..+|.|++|+|||.|+.++.++.. .+.--++. . ..++ .+| .|.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~--~d~ik~k~~l~~~~l-~~l-~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL--EDMIKVKGQLFSRIL-KLL-VDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--cCceeehhhhhHHHH-HHH-cCCC
Confidence 6889999999999 668899999999999999999999999999999999988 54433332 2 2444 334 8999
Q ss_pred hhHHHHHHHHHHhcchh
Q 002235 185 PSAKRNAFLMLFTCDQD 201 (949)
Q Consensus 185 ~~v~~~Al~~L~~i~~~ 201 (949)
+.|+..|-..|.++...
T Consensus 77 ~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998655
No 34
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.34 E-value=3.8e-05 Score=92.70 Aligned_cols=283 Identities=18% Similarity=0.185 Sum_probs=185.7
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHH---HHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc
Q 002235 93 EMILICQNLRNNLQHPNEYIRGV---TLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (949)
Q Consensus 93 e~iLv~NsL~KDL~~~N~~iR~~---ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~ 169 (949)
+|-..++-+.|-..+.|.-++-+ =|...++.. |+..--....+++=+.|+||++|-.|+-.+..+ ..+++++
T Consensus 52 dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~ 126 (757)
T COG5096 52 DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-PELALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLG 126 (757)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHH
Confidence 47667777777777666544332 244445544 455555678999999999999999999888876 5577887
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhc---chhhHHHH-HHHHHhh-cCccChhHHHHHHHHHHHhhhc---------
Q 002235 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTC---DQDRAINY-LLTHVDR-VSEWGELLQMVVLELIRKVCRT--------- 235 (949)
Q Consensus 170 ~~~e~l~~~L~~d~d~~v~~~Al~~L~~i---~~~~ai~~-L~~~l~~-i~~~~p~~q~~il~ll~~~~~~--------- 235 (949)
.+.+.+.+++ .|+++.|+++|+.++..+ +++....- +..++.. +.+.+|-....++..+....++
T Consensus 127 ~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~ 205 (757)
T COG5096 127 NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEV 205 (757)
T ss_pred HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 7778888866 999999999999887665 44432211 1112221 1244555444444444433322
Q ss_pred ---Cch------------hHHHHHHHHHHH-HcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHH
Q 002235 236 ---NKG------------EKGKYIKIIISL-LNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIV 299 (949)
Q Consensus 236 ---~p~------------~~~~li~~L~~l-L~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~ia 299 (949)
-|+ .....++.+... ....++++.++..-.......++..+..++..++.++.-.+++|.....
T Consensus 206 ~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~ 285 (757)
T COG5096 206 ILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLIS 285 (757)
T ss_pred HHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhh
Confidence 011 011112222221 1234567777777776666666777777888888888778888888888
Q ss_pred HHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHH
Q 002235 300 LDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLI 379 (949)
Q Consensus 300 L~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv 379 (949)
...|..+....+... .++++....-+.+.+-++++...++...++.+.++..|.+..+.+.. ..+..+.+.+.
T Consensus 286 ~~~l~~Ll~~~~~~~----~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l---~~~~n~~~~L~ 358 (757)
T COG5096 286 SPPLVTLLAKPESLI----QYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRL---ADDQNLSQILL 358 (757)
T ss_pred ccHHHHHHcCCHHHH----HHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhc---CCchhhHHHHH
Confidence 888888876653333 23444445557788999999999999999999999999888776544 23445566888
Q ss_pred HHHHHhHcc
Q 002235 380 QAIHSCAIK 388 (949)
Q Consensus 380 ~aI~~la~k 388 (949)
+++..+++.
T Consensus 359 e~~~y~~~~ 367 (757)
T COG5096 359 ELIYYIAEN 367 (757)
T ss_pred HHHHHHhhc
Confidence 888777764
No 35
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00095 Score=78.52 Aligned_cols=292 Identities=14% Similarity=0.245 Sum_probs=194.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHH
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I--~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l 175 (949)
.+-+..=|+|.-||+|--|+-.|-++ +-|+.+.+.+|-++..|+|++|-|-.+|+-.+.-+.+ ++|.-.=.+.++.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr--KnPknyL~LAP~f 223 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR--KNPQNYLQLAPLF 223 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh--hCCcccccccHHH
Confidence 34444456899999999999999886 6799999999999999999999999999999999999 8885443344555
Q ss_pred HHHHcc-CCChhHHHHHHHHHH---hcchhhH---HHHHHHHHhhcCccChhHHHHHHHHHHHhhhc--------CchhH
Q 002235 176 EKVLST-EQDPSAKRNAFLMLF---TCDQDRA---INYLLTHVDRVSEWGELLQMVVLELIRKVCRT--------NKGEK 240 (949)
Q Consensus 176 ~~~L~~-d~d~~v~~~Al~~L~---~i~~~~a---i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~--------~p~~~ 240 (949)
.++|.. ++|.+ ..--+.++. .+-|... +..|.++++. --+--.+-+.+..+... +....
T Consensus 224 fkllttSsNNWm-LIKiiKLF~aLtplEPRLgKKLieplt~li~s-----T~AmSLlYECvNTVVa~s~s~g~~d~~asi 297 (877)
T KOG1059|consen 224 YKLLVTSSNNWV-LIKLLKLFAALTPLEPRLGKKLIEPITELMES-----TVAMSLLYECVNTVVAVSMSSGMSDHSASI 297 (877)
T ss_pred HHHHhccCCCee-hHHHHHHHhhccccCchhhhhhhhHHHHHHHh-----hHHHHHHHHHHHHheeehhccCCCCcHHHH
Confidence 555533 44443 333334433 3334322 2333333331 11122233333332221 22234
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhC--hhhHHHH
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH--RDIMVDL 317 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~--p~~l~~~ 317 (949)
...++-|..++..+++...|=+..++..+.+ +|.++++--.-+++.| ++.|.++|.-||+.|..|.... ..+++..
T Consensus 298 qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL-~DkD~SIRlrALdLl~gmVskkNl~eIVk~L 376 (877)
T KOG1059|consen 298 QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL-DDKDESIRLRALDLLYGMVSKKNLMEIVKTL 376 (877)
T ss_pred HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh-ccCCchhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5556777788889999999999998888754 5777755444455555 7999999999999999987642 1233332
Q ss_pred HHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHH-----HHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCccc
Q 002235 318 IMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLM-----LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (949)
Q Consensus 318 ~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~-----L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~ 392 (949)
+..+...++...|-.-+.-+..+|+.+|...|.++ ++-++.+- ...+--..+-..|..++.+-|..
T Consensus 377 ---M~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l------~~~~~G~~I~eQi~Dv~iRV~~i 447 (877)
T KOG1059|consen 377 ---MKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARL------EGTRHGSLIAEQIIDVAIRVPSI 447 (877)
T ss_pred ---HHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhc------cccchhhHHHHHHHHHheechhh
Confidence 22234455568999999999999999998887653 11122221 12345567778888899998888
Q ss_pred HHHHHHHHHHHHhCC
Q 002235 393 ASTVVHLLMDFLGDS 407 (949)
Q Consensus 393 ~~~~l~~L~~lL~~~ 407 (949)
-+..++.+..++.+.
T Consensus 448 R~fsV~~m~~Ll~~~ 462 (877)
T KOG1059|consen 448 RPFSVSQMSALLDDP 462 (877)
T ss_pred hHhHHHHHHHHHhch
Confidence 777888887777754
No 36
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.28 E-value=0.00025 Score=80.23 Aligned_cols=211 Identities=18% Similarity=0.208 Sum_probs=149.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHH
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l 175 (949)
.....+.+.+.++++.+|..|...++.+...+.++ .+.+.+.|.++.||..|+.+++++.. |..+ +.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~----~l~~~l~d~~~~vr~~a~~aLg~~~~----~~a~----~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVP----LLRELLSDEDPRVRDAAADALGELGD----PEAV----PPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHH----HHHHHhcCCCHHHHHHHHHHHHccCC----hhHH----HHH
Confidence 35678889999999999999999999999888755 55679999999999999999998744 3333 333
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCc
Q 002235 176 EKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS 255 (949)
Q Consensus 176 ~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s 255 (949)
..+|..|.|..|+..|..+|..+...+++..|...+++-.... +.... ++. -
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~---a~~~~---------~~~----------------~ 162 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGS---AAAAL---------DAA----------------L 162 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhh---hhhhc---------cch----------------H
Confidence 3445458999999999999999999988887777765422111 11111 000 0
Q ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHH
Q 002235 256 TAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRK 335 (949)
Q Consensus 256 ~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~ 335 (949)
..|+..++..+..+.. +. ....++. ++.+.+..+|..+...|..+....+.+. ..+...+.+++..+|.+
T Consensus 163 ~~~r~~a~~~l~~~~~-~~----~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~~~~~~~----~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 163 LDVRAAAAEALGELGD-PE----AIPLLIE-LLEDEDADVRRAAASALGQLGSENVEAA----DLLVKALSDESLEVRKA 232 (335)
T ss_pred HHHHHHHHHHHHHcCC-hh----hhHHHHH-HHhCchHHHHHHHHHHHHHhhcchhhHH----HHHHHHhcCCCHHHHHH
Confidence 0677888888877753 21 2222233 3356666888888888888766442221 23556778888888888
Q ss_pred HHHHHHhhcCCCcHHHHHHHH
Q 002235 336 TLDIVLELITPRNINEVVLML 356 (949)
Q Consensus 336 aL~lL~~l~~~~Nv~~Iv~~L 356 (949)
++..+..+..++.+..++..+
T Consensus 233 ~~~~l~~~~~~~~~~~l~~~l 253 (335)
T COG1413 233 ALLALGEIGDEEAVDALAKAL 253 (335)
T ss_pred HHHHhcccCcchhHHHHHHHH
Confidence 888888888888887776544
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=5.7e-05 Score=87.58 Aligned_cols=313 Identities=17% Similarity=0.252 Sum_probs=199.2
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-ccccchHHH---HHHHHccCCChhHHH
Q 002235 114 GVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPEM---IEKVLSTEQDPSAKR 189 (949)
Q Consensus 114 ~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~li~~~~e~---l~~~L~~d~d~~v~~ 189 (949)
+.||-.|+++--.++++.++|.+++.|.|..-.||-++++|++.|.. .+- -.+|..+++ +-.+| +|+-|.|+.
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L-~DKkplVRs 452 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLL-DDKKPLVRS 452 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHh-ccCccceee
Confidence 67999999999999999999999999999999999999999999887 332 233444443 33444 899999988
Q ss_pred HHHHHHHhcchhh--------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHH----------
Q 002235 190 NAFLMLFTCDQDR--------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLL---------- 251 (949)
Q Consensus 190 ~Al~~L~~i~~~~--------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL---------- 251 (949)
-++-.|....+.- -.+.|..+++.+-..+-|.|-...-.+..+-..- ...+++.+..+|
T Consensus 453 ITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A---~~eLVp~l~~IL~~l~~af~kY 529 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA---GEELVPYLEYILDQLVFAFGKY 529 (885)
T ss_pred eeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHH
Confidence 8777777654321 1334556666666788899988888777663321 122333333333
Q ss_pred cCCchHHHHHHHHHHHccC----CChHHHHHHHHHHHHH--HccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheecc
Q 002235 252 NAPSTAVIYECAGTLVSLS----SAPTAIRAAANTYSQL--LLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL 325 (949)
Q Consensus 252 ~s~s~aV~~Eaa~~l~~l~----~~~~~l~~~a~~li~l--ll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L 325 (949)
+++|--+.|.|+.++-.-- +.|..++.+..++++. +++++|.++ |--|+.|..++..-..-|.++
T Consensus 530 Q~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~-------- 600 (885)
T KOG2023|consen 530 QKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPY-------- 600 (885)
T ss_pred hhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcccccc--------
Confidence 4577889999999985421 2466677777788765 356777665 566778877765422222221
Q ss_pred CCCCHHHHHHHHHHHHh-------hcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcc-----c-
Q 002235 326 NSPNLDIRRKTLDIVLE-------LITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE-----V- 392 (949)
Q Consensus 326 ~d~d~~Ir~~aL~lL~~-------l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~-----~- 392 (949)
-..+-.++.+++.+ .-++..++ -.+.+|-....+-+.-+++-.+. +
T Consensus 601 ---~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~------------------~pdkdfiI~sLDL~SGLaegLg~~ie~Lva 659 (885)
T KOG2023|consen 601 ---AQPVYQRCFRILQKTLQLLAKVQQDPTVE------------------APDKDFIIVSLDLLSGLAEGLGSHIEPLVA 659 (885)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhccCCcccc------------------CCCcceEEEeHHHHhHHHHHhhhchHHHhh
Confidence 12233444444433 22211111 11223333333333323222111 1
Q ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhccc------chHHHHHHHhhhcccCCCCCC
Q 002235 393 ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQI------RAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 393 ~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i------~~~~v~~~~lwiLGEy~~~~~ 465 (949)
...+++.|+.++.|.-..+++.+...+.++....++ .+...+.+++..+ +.-.+.-.++|.+||.+-+..
T Consensus 660 ~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~---~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 660 QSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE---HVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred hccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---hccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 124888999999999999999999999999865543 4455555555432 234578899999999876554
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.27 E-value=0.0015 Score=78.82 Aligned_cols=364 Identities=16% Similarity=0.187 Sum_probs=211.5
Q ss_pred cHHHHHHHhcCCChHHHH--HHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcc-----hhHHHHHHH-HHHhhcC-CCC
Q 002235 18 IANEIKEALEGNDVPAKV--DAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHT-----IQKLLLLYL-EIIDKTD-AKG 88 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~--~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~-----lKrL~YL~l-~~~~~~~-~d~ 88 (949)
=+.+|-..++||-.+--. ..+.-...+...+++--. ++.....+ ..+-++ +-|=+|+.+ .+.+-+. .-+
T Consensus 735 iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~-y~~l~s~l-t~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~ 812 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLD-YISLLSLL-TAPVYEQVTDGLHKQAYYSIAKCVAALTCACP 812 (1233)
T ss_pred hHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCcc-HHHHHHHH-cCCcccccccchhHHHHHHHHHHHHHHHHhcc
Confidence 456777788888654333 222222223333332212 66555533 333221 333344333 2222111 110
Q ss_pred CCCchHHHHHHHHHhhcCCC--CHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCC
Q 002235 89 RVLPEMILICQNLRNNLQHP--NEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ 163 (949)
Q Consensus 89 ~l~~e~iLv~NsL~KDL~~~--N~~iR~~ALr~L~~I~---~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~ 163 (949)
++.-=.+-.+.+|+++| |.-+|-.|+-.||.++ ...-.+.+...|.+++++++.-|+++|..|++.+.- .
T Consensus 813 ---~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--g 887 (1233)
T KOG1824|consen 813 ---QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--G 887 (1233)
T ss_pred ---ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--C
Confidence 22333445778888855 6689999999998885 344455567788999999999999999999999865 2
Q ss_pred Ccccccch-HHHHHHHHccCCChhHHHHHHHHHHhcchhh-------HHHHHHH-HHhhcCccChhHHHHHHHHHHHhhh
Q 002235 164 GEQLLVDA-PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-------AINYLLT-HVDRVSEWGELLQMVVLELIRKVCR 234 (949)
Q Consensus 164 ~~~li~~~-~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-------ai~~L~~-~l~~i~~~~p~~q~~il~ll~~~~~ 234 (949)
+ .+.+ |.+++. + +.+|-=++--+..|-++-... .+..+.. +++.+....+...-.+-+.+++++-
T Consensus 888 n---l~~yLpfil~q-i--~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l 961 (1233)
T KOG1824|consen 888 N---LPKYLPFILEQ-I--ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL 961 (1233)
T ss_pred c---hHhHHHHHHHH-H--hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh
Confidence 1 1233 344444 2 344544554444555432111 1222222 2234444456668889999999998
Q ss_pred cCchhHHHHHHHHHHHHcCCchHHHHHHHHHH---HccCCC--hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 002235 235 TNKGEKGKYIKIIISLLNAPSTAVIYECAGTL---VSLSSA--PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (949)
Q Consensus 235 ~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l---~~l~~~--~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~ 309 (949)
.+|+ .++..|...++|..+..+.-++.++ ++..+. ...++.....++.++ .++|.+||-++|..++..+..
T Consensus 962 ~epe---sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~-~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 962 IEPE---SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLL-RDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred CChH---HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHcc
Confidence 8876 6888899999998776555444443 333322 234566666666666 799999999999999999988
Q ss_pred ChhhHHHHHHhheeccC----------------------CCCHHHHHHHHHHHHhhcC----CCcHHHHHHHHHHHHHHh
Q 002235 310 HRDIMVDLIMDVLRALN----------------------SPNLDIRRKTLDIVLELIT----PRNINEVVLMLKKEVVKT 363 (949)
Q Consensus 310 ~p~~l~~~~~~il~~L~----------------------d~d~~Ir~~aL~lL~~l~~----~~Nv~~Iv~~L~kel~~~ 363 (949)
.|.++.+...+++..|. |+-..+|+.|.+-++.+.+ .-++-+.++ ++..-
T Consensus 1038 KpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~----~~~~G 1113 (1233)
T KOG1824|consen 1038 KPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLN----HVEDG 1113 (1233)
T ss_pred CHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHH----HHHhh
Confidence 88888777777665544 3445667777777666543 223333332 11111
Q ss_pred ccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhC
Q 002235 364 QSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (949)
Q Consensus 364 ~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~ 406 (949)
. +...++|-.-.--+.+++..-|......+|.+++-|+.
T Consensus 1114 L----~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~ 1152 (1233)
T KOG1824|consen 1114 L----EDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRK 1152 (1233)
T ss_pred c----chhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 1 11122333333333566666666666666666665553
No 39
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=9.6e-05 Score=86.86 Aligned_cols=365 Identities=15% Similarity=0.196 Sum_probs=221.3
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC---Cc-hhhHHH---HHHHHHHhccC
Q 002235 70 IQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL---NE-TEIIEP---LIPSVLQNLQH 142 (949)
Q Consensus 70 lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I---~~-~el~~~---l~~~I~~~L~d 142 (949)
+||+.++.+ +|+-.|.++| --+|-=|-+.|.-+.-+=+-++--+ .. ..+.+. +-..+++-|.|
T Consensus 41 mK~ii~~ml--------nGe~~p~Llm--~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH 110 (948)
T KOG1058|consen 41 MKKIIALML--------NGEDLPSLLM--TIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH 110 (948)
T ss_pred HHHHHHHHH--------cCCCchHHHH--HHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccC
Confidence 567666532 2332355443 3344445555555555444443222 21 222222 34678899999
Q ss_pred CChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh------hHHHHHHHHHhhcCc
Q 002235 143 RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD------RAINYLLTHVDRVSE 216 (949)
Q Consensus 143 ~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~------~ai~~L~~~l~~i~~ 216 (949)
+|.|||=..+-=+.|+ +.|++++.+.+.+..+| ...++-|++||+.+++.|-+. +|-..+.+.+. .+
T Consensus 111 PNEyiRG~TLRFLckL----kE~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~--~e 183 (948)
T KOG1058|consen 111 PNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL--TE 183 (948)
T ss_pred chHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH--hc
Confidence 9999998876555554 67999988888888887 788899999999999887544 13233333332 12
Q ss_pred cChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcC---CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCch
Q 002235 217 WGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNA---PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDN 293 (949)
Q Consensus 217 ~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s---~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~ 293 (949)
.+|-..-...=. +...+|+.+-.++.-...-+.+ ....|+.|-++-.+.- +|..-..-..+++.+|. ++++
T Consensus 184 ~DpsCkRNAFi~---L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--~p~~~~~~i~~i~~lL~-stss 257 (948)
T KOG1058|consen 184 QDPSCKRNAFLM---LFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--NPAEKARYIRCIYNLLS-STSS 257 (948)
T ss_pred cCchhHHHHHHH---HHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc--CHHHhhHHHHHHHHHHh-cCCc
Confidence 333322222111 1223444443333322222232 2346888888877773 34433345667777764 5588
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhheecc-CCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCH
Q 002235 294 NVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL-NSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNG 372 (949)
Q Consensus 294 nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L-~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~ 372 (949)
.++|-+--.|..+. ..|.++..-...++.|+ ..+|-.++.--|+.|..+- +.| +.+++.|.-.+.+..+ ..|-
T Consensus 258 aV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~-~~il~~l~mDvLrvLs---s~dl 331 (948)
T KOG1058|consen 258 AVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALH-EKILQGLIMDVLRVLS---SPDL 331 (948)
T ss_pred hhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhh-HHHHHHHHHHHHHHcC---cccc
Confidence 99998888777764 47887766544455553 4556668888888888776 333 4444444444555555 4577
Q ss_pred HHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCC-------cccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc
Q 002235 373 EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN-------VASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR 445 (949)
Q Consensus 373 e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~-------~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~ 445 (949)
++|+..++-.-.++.. .....++++|-.=+.... +..++..+..+....-++|+.-..++..|+++|.|-
T Consensus 332 dvr~Ktldi~ldLvss--rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~- 408 (948)
T KOG1058|consen 332 DVRSKTLDIALDLVSS--RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS- 408 (948)
T ss_pred cHHHHHHHHHHhhhhh--ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC-
Confidence 8999888877666632 344566666655443322 223455667777777789999999999999999884
Q ss_pred hHHHHHHHhhhcccCCCCCCc
Q 002235 446 AARVCTCALWIIGEYCQSLSE 466 (949)
Q Consensus 446 ~~~v~~~~lwiLGEy~~~~~~ 466 (949)
.+.....++-.+.|-.+..++
T Consensus 409 N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred CHHHHHHHHHHHHHHHHhCch
Confidence 455666666667776666664
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.22 E-value=2e-05 Score=80.97 Aligned_cols=162 Identities=18% Similarity=0.217 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCC
Q 002235 292 DNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 292 d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~ 371 (949)
+|.+|-.++..+..|..++|.++.++...+..+|.|+++.||+.|+.++..|..+.-+.- =..+..++..... |.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-k~~l~~~~l~~l~---D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-KGQLFSRILKLLV---DEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-hhhhhHHHHHHHc---CCC
Confidence 578999999999999999999999999999999999999999999999999987644332 1222123333333 678
Q ss_pred HHHHHHHHHHHHHhHcc-CcccHHHHHHHHHHHHhCCCc------ccH---HHHHHHHHHHHHhCcccHHHHHHHHHHHh
Q 002235 372 GEYRQMLIQAIHSCAIK-FPEVASTVVHLLMDFLGDSNV------ASA---IDVIIFVREIIEMNPKLRVSIITRLLDNF 441 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~k-f~~~~~~~l~~L~~lL~~~~~------~v~---~e~i~~l~~ii~~~p~~~~~~l~~L~~~l 441 (949)
+++|..+...+..+..+ .|......+.-++..|....+ ... ..+..++-+.+.+ ++.++.++.+||.-+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence 99999999999999987 777665555555555554321 122 2233444444322 355788999999987
Q ss_pred cccc---hHHHHHHHhhhcc
Q 002235 442 YQIR---AARVCTCALWIIG 458 (949)
Q Consensus 442 ~~i~---~~~v~~~~lwiLG 458 (949)
.... .+.+.+-++.++.
T Consensus 156 ~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 156 LNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHcccccHHHHHHHHHHHH
Confidence 7655 5666666666553
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.20 E-value=0.0019 Score=73.14 Aligned_cols=258 Identities=15% Similarity=0.159 Sum_probs=171.9
Q ss_pred chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHH
Q 002235 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPL 132 (949)
Q Consensus 53 ~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l 132 (949)
...-.+++ ++.+++..+|.-+..++..+ +..-++..+.+-+.++++.+|..|..+|+.+.+++.++++
T Consensus 43 ~~~~~~~~-~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~l 110 (335)
T COG1413 43 EAADELLK-LLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPL 110 (335)
T ss_pred hhHHHHHH-HHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHH
Confidence 45566666 55788888888887765544 1234678999999999999999999999999999998888
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCC----------h--hHHHHHHHHHHhcch
Q 002235 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD----------P--SAKRNAFLMLFTCDQ 200 (949)
Q Consensus 133 ~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d----------~--~v~~~Al~~L~~i~~ 200 (949)
+..+.. |.+.+||++|+.+++++.. +.. +.++++. + .+.+ + .++.++...|..+..
T Consensus 111 i~~l~~---d~~~~vR~~aa~aL~~~~~----~~a---~~~l~~~-l-~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 111 VELLEN---DENEGVRAAAARALGKLGD----ERA---LDPLLEA-L-QDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHc---CCcHhHHHHHHHHHHhcCc----hhh---hHHHHHH-h-ccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 776655 9999999999999999876 211 3455543 4 4433 2 577788888888777
Q ss_pred hhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHH
Q 002235 201 DRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAA 280 (949)
Q Consensus 201 ~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a 280 (949)
..++..+...+.. .....+......+......+ ..+...+...+...+..|+..++.++..+.... ..
T Consensus 179 ~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~-----~~ 246 (335)
T COG1413 179 PEAIPLLIELLED---EDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGDEE-----AV 246 (335)
T ss_pred hhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcch-----hH
Confidence 7666666655542 33355666666666654332 345577778888888889999998888876432 23
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHH
Q 002235 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVV 353 (949)
Q Consensus 281 ~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv 353 (949)
..++..+ ...+..++...-..+... ..+.. ...+...+.|.+..++..+...+............+
T Consensus 247 ~~l~~~l-~~~~~~~~~~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 312 (335)
T COG1413 247 DALAKAL-EDEDVILALLAAAALGAL--DLAEA----ALPLLLLLIDEANAVRLEAALALGQIGQEKAVAALL 312 (335)
T ss_pred HHHHHHH-hccchHHHHHHHHHhccc--Cchhh----HHHHHHHhhcchhhHHHHHHHHHHhhcccchHHHHH
Confidence 3334433 344545444433333211 11111 112333566777888888888888877777666544
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.19 E-value=7.4e-06 Score=73.35 Aligned_cols=85 Identities=27% Similarity=0.369 Sum_probs=67.3
Q ss_pred HHHHhhc-CCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHH
Q 002235 99 QNLRNNL-QHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK 177 (949)
Q Consensus 99 NsL~KDL-~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~ 177 (949)
..|.+-| +++|+.+|..|+++|+++.+++.+ +.+.+.+.|++|.||+.|+.++.++-. ++..+.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAI----PALIELLKDEDPMVRRAAARALGRIGD--------PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHH----HHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHH----HHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHH
Confidence 4567777 899999999999999999988764 455667799999999999999998744 334455556
Q ss_pred HHccCCChhHHHHHHHHH
Q 002235 178 VLSTEQDPSAKRNAFLML 195 (949)
Q Consensus 178 ~L~~d~d~~v~~~Al~~L 195 (949)
++.++.+..|+..|+.+|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 676677788888888776
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00032 Score=81.57 Aligned_cols=308 Identities=18% Similarity=0.238 Sum_probs=201.2
Q ss_pred CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHH--HccCCChhHHHHHHHHHHhcchh
Q 002235 124 NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKV--LSTEQDPSAKRNAFLMLFTCDQD 201 (949)
Q Consensus 124 ~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~--L~~d~d~~v~~~Al~~L~~i~~~ 201 (949)
..++....+-..+.+++.|.+|.||-..=.-+..|+. ..-+..|++++..+ ++..+|....-.|+.+|..|+.+
T Consensus 83 ~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s----~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 83 IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIAS----TGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeec----ccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 3456677777778888999999999876666666655 22345677655432 23677778888999999988887
Q ss_pred hHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHHHH
Q 002235 202 RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAA 280 (949)
Q Consensus 202 ~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~~a 280 (949)
.|- .|- ++|. .+ | ...+++.+.++.+|.++.++-.|..++-.+-. .++++-...
T Consensus 159 sa~-~ld---------s~~~--------~r-----p--l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i 213 (885)
T KOG2023|consen 159 SAQ-FLD---------SDVL--------TR-----P--LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI 213 (885)
T ss_pred hHH-HHh---------hhcc--------cC-----c--hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH
Confidence 532 121 0111 00 0 12345556667778888888777777655422 233333334
Q ss_pred HHHHHHH---ccCCchHHHHHHHHHHHHHHhhChhhHHHHHHh----heeccCCCCHHHHHHHHHHHHhhcCCCcHHHHH
Q 002235 281 NTYSQLL---LSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD----VLRALNSPNLDIRRKTLDIVLELITPRNINEVV 353 (949)
Q Consensus 281 ~~li~ll---l~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~----il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv 353 (949)
..+++.+ -++.+++||--+-+.+..+...+|+-+.+|... ++..-.|.|..|...|-+..+.++...-.+.++
T Consensus 214 D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L 293 (885)
T KOG2023|consen 214 DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVL 293 (885)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHH
Confidence 4444322 368899999999999999999888877776544 455567999999999999999998876544444
Q ss_pred HHHHHHHHH-------hcc--------CC-------------------------------c-cC----------CHHHHH
Q 002235 354 LMLKKEVVK-------TQS--------GE-------------------------------L-EK----------NGEYRQ 376 (949)
Q Consensus 354 ~~L~kel~~-------~~~--------~~-------------------------------~-d~----------~~e~r~ 376 (949)
..-++.+.. |.+ .+ + +. +...|+
T Consensus 294 ~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRk 373 (885)
T KOG2023|consen 294 QPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRK 373 (885)
T ss_pred HHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhh
Confidence 332222211 110 00 0 00 134788
Q ss_pred HHHHHHHHhHccCcccHHHHHHHHHHHHhCC----CcccHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHhcccchH
Q 002235 377 MLIQAIHSCAIKFPEVASTVVHLLMDFLGDS----NVASAIDVIIFVREIIEM-----NPKLRVSIITRLLDNFYQIRAA 447 (949)
Q Consensus 377 ~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~----~~~v~~e~i~~l~~ii~~-----~p~~~~~~l~~L~~~l~~i~~~ 447 (949)
-...+|.-++.-|++ .+++.++.+|+.. .=.+.+..|.++..|.+- +|.+- .++..|+..+.| +.+
T Consensus 374 CSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~D-Kkp 448 (885)
T KOG2023|consen 374 CSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDD-KKP 448 (885)
T ss_pred ccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhcc-Ccc
Confidence 899999999988875 5566666666542 223444457788888762 44433 477888888877 667
Q ss_pred HHHHHHhhhcccCCCCCC
Q 002235 448 RVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 448 ~v~~~~lwiLGEy~~~~~ 465 (949)
-+++..+|.+|.|+++.-
T Consensus 449 lVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 449 LVRSITCWTLSRYSKWVV 466 (885)
T ss_pred ceeeeeeeeHhhhhhhHh
Confidence 899999999999999765
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0028 Score=73.73 Aligned_cols=299 Identities=15% Similarity=0.188 Sum_probs=181.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCC
Q 002235 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~-------s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~ 91 (949)
....-..+.|.+...+..+..++-.+.+.+.+. +...+..++++-..++..++--.=-++..++.-+++.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~--- 144 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ--- 144 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh---
Confidence 344556677778877888888888888888763 2567778886544555777766666666664433211
Q ss_pred chHH---HHHHHHHhhcCCCCHHHHHHHHHHhhcCCc--hhh-----HHHHHHHHHHhccCCCh-HHHHHHHHHHHHHhc
Q 002235 92 PEMI---LICQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEI-----IEPLIPSVLQNLQHRHP-YIRRNAILAVMAIYK 160 (949)
Q Consensus 92 ~e~i---Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el-----~~~l~~~I~~~L~d~~p-yVRk~A~lal~ki~~ 160 (949)
...+ -++-.|.+-+++|++.+|.-|.=+|++|.- |.. -..+++.+...+....+ ...|+|.-++-.+++
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 1111 133447888999999999999999999852 221 12244555666666665 677899999999998
Q ss_pred CCCCc----ccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcC
Q 002235 161 LPQGE----QLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN 236 (949)
Q Consensus 161 l~~~~----~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~ 236 (949)
- +.| +.+..+.+.+..+| ...|+.|...|+.++..+.. .++++.|..+ ..
T Consensus 225 g-k~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsd---------------g~ne~iq~vi-----~~---- 278 (514)
T KOG0166|consen 225 G-KNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTD---------------GSNEKIQMVI-----DA---- 278 (514)
T ss_pred C-CCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhc---------------CChHHHHHHH-----Hc----
Confidence 3 223 22223345555544 78899998888766554321 2334433332 11
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH-----HHH-HHHHHHHHHccCCchHHHHHHHHHHHHHHhhC
Q 002235 237 KGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-----IRA-AANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (949)
Q Consensus 237 p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~-----l~~-~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~ 310 (949)
..+..|..+|.+.+..|+--|.+++.++....+. +.. +...+..++.+++...+|--|.-.|+.|..-+
T Consensus 279 -----gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 279 -----GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred -----cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 1234456666666666666666776665332111 111 11233333333444556666666666665543
Q ss_pred hhhH-----HHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHH
Q 002235 311 RDIM-----VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINE 351 (949)
Q Consensus 311 p~~l-----~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~ 351 (949)
+.-+ ......++.++...+..+|+.|.=.+..++...+-+.
T Consensus 354 ~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 354 QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence 3211 2234456778888888999999999998888888444
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.10 E-value=0.00058 Score=78.89 Aligned_cols=255 Identities=15% Similarity=-0.001 Sum_probs=162.9
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHH
Q 002235 110 EYIRGVTLRFLCRLNETEIIEPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAK 188 (949)
Q Consensus 110 ~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L-~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~ 188 (949)
+-.++. |..|..++ +...+.+ ...+ .+..+-|+..|+.++..... + ...+.+-..| .|.++.|+
T Consensus 39 eRL~Ah-LdgL~~~G-~~a~~~L----~~aL~~d~~~ev~~~aa~al~~~~~----~----~~~~~L~~~L-~d~~~~vr 103 (410)
T TIGR02270 39 ERLLAH-VDGLVLAG-KAATELL----VSALAEADEPGRVACAALALLAQED----A----LDLRSVLAVL-QAGPEGLC 103 (410)
T ss_pred HHHHHH-HHHHHHhh-HhHHHHH----HHHHhhCCChhHHHHHHHHHhccCC----h----HHHHHHHHHh-cCCCHHHH
Confidence 333444 56665555 4444444 4566 57889999988877764322 2 2233343445 78889999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHc
Q 002235 189 RNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVS 268 (949)
Q Consensus 189 ~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~ 268 (949)
..+...|.++....+...|...++ ..+|+.+..++..+..... +| .+.+..+|++.++.|+-+|++++..
T Consensus 104 ~aaa~ALg~i~~~~a~~~L~~~L~---~~~p~vR~aal~al~~r~~-~~------~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 104 AGIQAALGWLGGRQAEPWLEPLLA---ASEPPGRAIGLAALGAHRH-DP------GPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred HHHHHHHhcCCchHHHHHHHHHhc---CCChHHHHHHHHHHHhhcc-Ch------HHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 999999999998888888877764 5689999888888776422 22 3678888999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCc
Q 002235 269 LSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRN 348 (949)
Q Consensus 269 l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~N 348 (949)
+... . +...+. ..+.+.++.||..++..+..+.. +..+... ......++...+.....++-...+++-
T Consensus 174 l~~~-~----a~~~L~-~al~d~~~~VR~aA~~al~~lG~--~~A~~~l----~~~~~~~g~~~~~~l~~~lal~~~~~a 241 (410)
T TIGR02270 174 LPRR-L----SESTLR-LYLRDSDPEVRFAALEAGLLAGS--RLAWGVC----RRFQVLEGGPHRQRLLVLLAVAGGPDA 241 (410)
T ss_pred hccc-c----chHHHH-HHHcCCCHHHHHHHHHHHHHcCC--HhHHHHH----HHHHhccCccHHHHHHHHHHhCCchhH
Confidence 8643 1 122222 33578899999999999987743 5555432 222345566666555555555555544
Q ss_pred HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 002235 349 INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREI 422 (949)
Q Consensus 349 v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~i 422 (949)
++.+. ++.+ +...+..++.++|.+..- ..+..|++.+.+.. +..-+-..+..|
T Consensus 242 ~~~L~-----~ll~--------d~~vr~~a~~AlG~lg~p------~av~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 242 QAWLR-----ELLQ--------AAATRREALRAVGLVGDV------EAAPWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HHHHH-----HHhc--------ChhhHHHHHHHHHHcCCc------chHHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 44333 2221 234888888888877642 34556666665432 333333444433
No 46
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.008 Score=70.80 Aligned_cols=374 Identities=17% Similarity=0.163 Sum_probs=218.5
Q ss_pred CCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCCh
Q 002235 66 EDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHP 145 (949)
Q Consensus 66 ~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~p 145 (949)
+..-.-||+|+|+.-+. .+ .|.+ | ++|-| +--.-+.-.|-=+++..|-+ ...++..-+...|++=|.+++|
T Consensus 55 kKKYV~KLlyI~llg~d-Id-FGhm--E---aV~LL-ss~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~ 125 (938)
T KOG1077|consen 55 KKKYVCKLLYIYLLGYD-ID-FGHM--E---AVNLL-SSNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNP 125 (938)
T ss_pred hHHHHHHHHHHHHhcCc-cc-cchH--H---HHHHh-hcCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCc
Confidence 34455688999987642 11 2321 1 22222 11122233455566666655 4578888899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHc-cCCChhHHH-HHHHHHHhcc--hh-----hHHHHHHHHHhhcCc
Q 002235 146 YIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS-TEQDPSAKR-NAFLMLFTCD--QD-----RAINYLLTHVDRVSE 216 (949)
Q Consensus 146 yVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~-~d~d~~v~~-~Al~~L~~i~--~~-----~ai~~L~~~l~~i~~ 216 (949)
.----|+.|++.+..+ +..+.+..-+.++|. .+.-..|+. +|+++|.-.+ |+ .=.+.+.+++++-.-
T Consensus 126 ~fv~LAL~~I~niG~r----e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~ 201 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSR----EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHM 201 (938)
T ss_pred HHHHHHHHHHHhhccH----hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCcccc
Confidence 9999999999998763 222223333335442 333345654 5555544332 22 113456666654210
Q ss_pred cChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHc-------C---------CchHHHHHHHHHHHccCCC-hHHHHHH
Q 002235 217 WGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLN-------A---------PSTAVIYECAGTLVSLSSA-PTAIRAA 279 (949)
Q Consensus 217 ~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~-------s---------~s~aV~~Eaa~~l~~l~~~-~~~l~~~ 279 (949)
.--.+-..+++++.++-+ ++.+..+-..+..+.+ + .+|=......+++..+.+. ....++.
T Consensus 202 gv~ta~~sLi~~lvk~~p--~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~ 279 (938)
T KOG1077|consen 202 GVVTAATSLIEALVKKNP--ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRAR 279 (938)
T ss_pred ceeeehHHHHHHHHHcCC--HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHH
Confidence 001124556666665532 2222222222222221 1 2344666677777776431 1122222
Q ss_pred HHHHHHHHccCC----------chHHHHHHHHHHHHHHh---hChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 280 ANTYSQLLLSQS----------DNNVKLIVLDRLNELRS---SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 280 a~~li~lll~~~----------d~nvr~iaL~~L~~l~~---~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
....++.+++-. ..|.+-++|=-...++. ..|+++..+...+-..|++....||-.||+-+..|++.
T Consensus 280 l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss 359 (938)
T KOG1077|consen 280 LNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS 359 (938)
T ss_pred HHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc
Confidence 222222222211 13444444443333433 46788999888888889999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhC
Q 002235 347 RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN 426 (949)
Q Consensus 347 ~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~ 426 (949)
+-..+.|+.=...+...... |.|..+|+.+++-+...|.. +.+..+++-|+.+|......+.+|++.-+.-+.+++
T Consensus 360 ~~s~davK~h~d~Ii~sLkt--erDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 360 EFSIDAVKKHQDTIINSLKT--ERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred cchHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 66555554332223333322 67889999999999999876 567899999999999987778888776555555553
Q ss_pred -cc--cHHHHHHHHHHHhcccchHHHHHHHhhhcc
Q 002235 427 -PK--LRVSIITRLLDNFYQIRAARVCTCALWIIG 458 (949)
Q Consensus 427 -p~--~~~~~l~~L~~~l~~i~~~~v~~~~lwiLG 458 (949)
++ ..-.++-+|++.-.+..+.++-.+++.++-
T Consensus 436 AtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv 470 (938)
T KOG1077|consen 436 ATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV 470 (938)
T ss_pred cCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe
Confidence 22 344566677776666666666555555553
No 47
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=98.04 E-value=1.4e-05 Score=73.47 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=78.4
Q ss_pred ccccCChhhhHHhhcccCcCcEEEee-ccCCCHHHHHHHHHHHcCCeecCCCCccCCCchHHHHHhhcccccCce-EEEE
Q 002235 832 SPAVCTDAAFRTMWAEFEWENKVAVN-TVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGED-ALVN 909 (949)
Q Consensus 832 ~p~~~~~~~Fr~~W~efewEnk~~v~-~~~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~ge~-al~n 909 (949)
+|..++.++|..||..|.-|-|++++ +...++.++++.+.+.+|+++++. -|+.++.|+-| +.|+. .|+-
T Consensus 1 RPl~isTeeFG~~W~s~~~e~k~~l~~~~~~t~~~~l~~l~~~l~lh~Vev----Ig~E~I~A~~l----l~~~~~~L~H 72 (104)
T PF14807_consen 1 RPLQISTEEFGQLWLSFSNERKQNLPSSSQRTLPEFLQRLQQKLRLHVVEV----IGNEGIFACQL----LNSSPVCLLH 72 (104)
T ss_pred CCccccHHHHHHHHHcCCCeEEEeccccCcCCHHHHHHHHHHhcCceEEEE----eCccceeeeec----cCCCCeEEEE
Confidence 69999999999999999999999995 566789999999999999999997 56677877666 66666 8877
Q ss_pred EEEEEecCCceEEEEEEeeCChhHHHhh
Q 002235 910 VSIEKQTDGKLSGYIRIRSKTQGIALSL 937 (949)
Q Consensus 910 ~s~~~~~~~~v~g~~riRs~~q~ia~sl 937 (949)
+++. ++ ...+-|||.++..+.++
T Consensus 73 ~~~~----~~-~l~l~vrs~~~~l~d~l 95 (104)
T PF14807_consen 73 CRVN----AG-TLDLWVRSSDSPLTDCL 95 (104)
T ss_pred EEec----CC-eEEEEEEcCCCCcHHHH
Confidence 7662 24 88999999999988776
No 48
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.001 Score=77.56 Aligned_cols=243 Identities=17% Similarity=0.181 Sum_probs=167.3
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh--
Q 002235 236 NKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI-- 313 (949)
Q Consensus 236 ~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~-- 313 (949)
-+.+++...+.+..+....++.|+-.|+..++.|+..-+.-+++-...++.+ ++.+-.||-.|++.+....+.+|.-
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4556777788888888899999999999999999864333333444444544 6778889999999999998887521
Q ss_pred --------HHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH---------------hccC----
Q 002235 314 --------MVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVK---------------TQSG---- 366 (949)
Q Consensus 314 --------l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~---------------~~~~---- 366 (949)
...-...+-..+.|-...||-.|-+.|..+.+-+. +-|-+.|-|.+-. +.+.
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 11222334456888899999999998887643221 1122222233222 0010
Q ss_pred ----------C----------------------ccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHH
Q 002235 367 ----------E----------------------LEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAID 414 (949)
Q Consensus 367 ----------~----------------------~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e 414 (949)
+ .|.-.|+|+.+|.+++.++..-|..+...+++|++.+.|+-..+.-.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHH
Confidence 0 01124789999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCC-CCCCcHHHHHHHHHHHhCCCC
Q 002235 415 VIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYC-QSLSEVENGIATIKQCLGELP 482 (949)
Q Consensus 415 ~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~-~~~~~~~~~~~~i~~~l~~~p 482 (949)
++..+..|..+ -.+++..+...++.|+| ...+++.++--+|+--- ...+-+.-++..+...++..|
T Consensus 430 ai~aL~~Is~~-l~i~eeql~~il~~L~D-~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyP 496 (823)
T KOG2259|consen 430 AIFALTMISVH-LAIREEQLRQILESLED-RSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYP 496 (823)
T ss_pred HHHHHHHHHHH-heecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCC
Confidence 99999988765 66788888888888887 44566666666666321 112223444555555666554
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.00 E-value=0.0014 Score=75.62 Aligned_cols=239 Identities=13% Similarity=0.026 Sum_probs=163.5
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 98 CQNLRNNL-QHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 98 ~NsL~KDL-~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
+..+..-| .++.+-++..|...+.....+.. ...+.+++.|.++.||..|+-++.++.. +++...+.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~----~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~ 123 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQEDALD----LRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLE 123 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCChHH----HHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHH
Confidence 34455555 35777888888888887777665 4455678899999999999999998755 34445565
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCch
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (949)
.+| .+.+|.|++.++.++..... ++...+...++ ..+|......++.++.+...+ ....|...+.+.++
T Consensus 124 ~~L-~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~------a~~~L~~al~d~~~ 192 (410)
T TIGR02270 124 PLL-AASEPPGRAIGLAALGAHRH-DPGPALEAALT---HEDALVRAAALRALGELPRRL------SESTLRLYLRDSDP 192 (410)
T ss_pred HHh-cCCChHHHHHHHHHHHhhcc-ChHHHHHHHhc---CCCHHHHHHHHHHHHhhcccc------chHHHHHHHcCCCH
Confidence 655 88899999999877766443 35666766664 678888999999999886532 33556677999999
Q ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHH
Q 002235 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (949)
Q Consensus 257 aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~a 336 (949)
.|+..|+.++..+.. +.. ...++.+. ..++.-.+......+... ..|..+.. +..++.++. +|.-+
T Consensus 193 ~VR~aA~~al~~lG~-~~A----~~~l~~~~-~~~g~~~~~~l~~~lal~--~~~~a~~~----L~~ll~d~~--vr~~a 258 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLA----WGVCRRFQ-VLEGGPHRQRLLVLLAVA--GGPDAQAW----LRELLQAAA--TRREA 258 (410)
T ss_pred HHHHHHHHHHHHcCC-HhH----HHHHHHHH-hccCccHHHHHHHHHHhC--CchhHHHH----HHHHhcChh--hHHHH
Confidence 999999999988865 433 23333322 333433332222222111 23344333 444556644 99999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhH
Q 002235 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (949)
Q Consensus 337 L~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la 386 (949)
+..+..+++++-+.-++..+. ++.+++.+-.++..+.
T Consensus 259 ~~AlG~lg~p~av~~L~~~l~-------------d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAMR-------------EPPWARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHcCCcchHHHHHHHhc-------------CcHHHHHHHHHHHHhh
Confidence 999999999999888775221 3358888888887665
No 50
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.97 E-value=0.00051 Score=74.29 Aligned_cols=172 Identities=22% Similarity=0.318 Sum_probs=125.6
Q ss_pred HHHhcc-CCChHHHHHHHHHHHHHhcCCCCcccccch--HHHHHHHHccCCChhHHHHHHHHHHhcchhhH-----HHHH
Q 002235 136 VLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLLVDA--PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA-----INYL 207 (949)
Q Consensus 136 I~~~L~-d~~pyVRk~A~lal~ki~~l~~~~~li~~~--~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a-----i~~L 207 (949)
+...|. .++|+++..|..+++..-.-|...+.+.+. .+++.++| .++++.++..|+.+|..+..+.. -.|+
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i 95 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDENQEQIKMYI 95 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 344555 478999999999999875533455666553 57888866 88999999999999998765431 2355
Q ss_pred HHHHhhcC--ccChhHHHHHHHHHHHhhhcCc--hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHH-----
Q 002235 208 LTHVDRVS--EWGELLQMVVLELIRKVCRTNK--GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRA----- 278 (949)
Q Consensus 208 ~~~l~~i~--~~~p~~q~~il~ll~~~~~~~p--~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~----- 278 (949)
.+.+..+. .++...|+..+++|+.+...+. ......+..+..+|.+.+..+...+.+++++++.+|...+.
T Consensus 96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q 175 (254)
T PF04826_consen 96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQ 175 (254)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 55555432 3466789999999999876542 22345667778899999999999999999999988765443
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
+...++.+|-.+.+.++-..+|..+..|..
T Consensus 176 ~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 176 VLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred chhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 335788888776677777777777776643
No 51
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.95 E-value=0.0013 Score=80.40 Aligned_cols=205 Identities=18% Similarity=0.242 Sum_probs=125.9
Q ss_pred HcCCchHHHHHHHHHHHccCCChHHHHHHH-----HHHHHHHccCCchHHHHHHHHHHHHHHhhCh---hhHHHHHHhhe
Q 002235 251 LNAPSTAVIYECAGTLVSLSSAPTAIRAAA-----NTYSQLLLSQSDNNVKLIVLDRLNELRSSHR---DIMVDLIMDVL 322 (949)
Q Consensus 251 L~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a-----~~li~lll~~~d~nvr~iaL~~L~~l~~~~p---~~l~~~~~~il 322 (949)
+.++++.|..|++.++++++.++.-.+..+ ..+++..++..|+- .+..+..++++.+ ..|.+++.++.
T Consensus 421 l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~ 496 (708)
T PF05804_consen 421 LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDLA 496 (708)
T ss_pred HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 344555566777777777765543222221 23455555555533 3345555555432 35677888887
Q ss_pred eccCC-CCHHHHHHHHHHHHhhcCC-CcHHHHHHH--HHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH----
Q 002235 323 RALNS-PNLDIRRKTLDIVLELITP-RNINEVVLM--LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS---- 394 (949)
Q Consensus 323 ~~L~d-~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~~--L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~---- 394 (949)
.++.. ++.+..-.+|-+|..+..+ -++..++++ |...+.+..... ...++..-++|..+|.+|. .|..+.
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g-~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~ 574 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPG-ASEDDLLLEVVILLGTLAS-DPECAPLLAK 574 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHC-CHHHHHHHHh
Confidence 77764 4788888888888888744 377777753 222233222111 2346799999999998884 455554
Q ss_pred -HHHHHHHHHHhCCC--cccHHHHHHHHHHHHHhCcccHHH------HHHHHHHHhcccc--hHHHHHHHhhhcccCCC
Q 002235 395 -TVVHLLMDFLGDSN--VASAIDVIIFVREIIEMNPKLRVS------IITRLLDNFYQIR--AARVCTCALWIIGEYCQ 462 (949)
Q Consensus 395 -~~l~~L~~lL~~~~--~~v~~e~i~~l~~ii~~~p~~~~~------~l~~L~~~l~~i~--~~~v~~~~lwiLGEy~~ 462 (949)
.+++.|+++|+... +..+-.++.++..++. +++.|+. ++.+|++.+.|-. --++.-.++-+++||-+
T Consensus 575 sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~-h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 575 SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF-HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc-ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 34889999998654 3455555556666654 3666654 5668888887722 23456677888888865
No 52
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0015 Score=75.93 Aligned_cols=236 Identities=16% Similarity=0.212 Sum_probs=156.4
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhcCCCCcccc---
Q 002235 94 MILICQNLRNNLQHP-NEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLL--- 168 (949)
Q Consensus 94 ~iLv~NsL~KDL~~~-N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~-d~~pyVRk~A~lal~ki~~l~~~~~li--- 168 (949)
.+-.+.+++|-+... ||-+. .. +...++|.+.++|. +.+|-++-.|+-|+.+|.. ...+.-
T Consensus 83 q~~a~~~~rkllS~~~~ppi~-~v-----------i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs--gtse~T~~v 148 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPID-EV-----------IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS--GTSEQTKVV 148 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHH-HH-----------HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc--Cchhhcccc
Confidence 355667777777443 33221 11 12235667777885 6789999999999999988 444322
Q ss_pred -cc-hHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccCh-hHHHHHHHHHHHhhh
Q 002235 169 -VD-APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGE-LLQMVVLELIRKVCR 234 (949)
Q Consensus 169 -~~-~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p-~~q~~il~ll~~~~~ 234 (949)
+. ...++-.+| .+++.-|+..|+-+|..|..+. ++..|..+ +...++ -..-.+.-.+..+|+
T Consensus 149 v~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~---l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 149 VDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL---LNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH---hccccchHHHHHHHHHHHHHHc
Confidence 22 235555645 8888999999999999986442 12333333 333333 234556777888888
Q ss_pred cC-c----hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCCchHHHHHHHHHH
Q 002235 235 TN-K----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRL 303 (949)
Q Consensus 235 ~~-p----~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L 303 (949)
.- | .....+++.|..+|++.++.|.-.|++++.+++.. ++.++. .+..++.+| .++.++++-.+|+.+
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhc
Confidence 63 3 35688999999999999999999999999999854 333433 234567766 677889999999999
Q ss_pred HHHHhhCh---hhH--HHHHHhheeccC-CCCHHHHHHHHHHHHhhcCCCcH
Q 002235 304 NELRSSHR---DIM--VDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNI 349 (949)
Q Consensus 304 ~~l~~~~p---~~l--~~~~~~il~~L~-d~d~~Ir~~aL~lL~~l~~~~Nv 349 (949)
..|+.-.- .++ ......+..+++ ++...||+.|.=++..++. .|.
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~ 354 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQ 354 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCH
Confidence 88765321 111 112333455566 5566699999888888654 443
No 53
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.1 Score=62.63 Aligned_cols=349 Identities=12% Similarity=0.173 Sum_probs=211.8
Q ss_pred chH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHH----HHHHHHHhccCCChH-HHHHHHHHHHHHhcCCCCc
Q 002235 92 PEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEP----LIPSVLQNLQHRHPY-IRRNAILAVMAIYKLPQGE 165 (949)
Q Consensus 92 ~e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~----l~~~I~~~L~d~~py-VRk~A~lal~ki~~l~~~~ 165 (949)
+|. -.+-|-+.+-|.+|-|.++..|-.+++.|..-|+-.. ++..++.+..+..|. ||..++.+++-|..- .+|
T Consensus 85 ~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~-i~p 163 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED-IDP 163 (859)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCH
Confidence 444 4677788888888888888888888888877666554 444555555555555 999999999999884 566
Q ss_pred ccccch-----HHHHHHHHccCCChhHHHHHHHHHHhcc--------hhhHHHHHHHHHhhc-CccChhHHHHHHHHHHH
Q 002235 166 QLLVDA-----PEMIEKVLSTEQDPSAKRNAFLMLFTCD--------QDRAINYLLTHVDRV-SEWGELLQMVVLELIRK 231 (949)
Q Consensus 166 ~li~~~-----~e~l~~~L~~d~d~~v~~~Al~~L~~i~--------~~~ai~~L~~~l~~i-~~~~p~~q~~il~ll~~ 231 (949)
+.+..- ..++......+++..|+.+|+.+|+..- .+.-.+|+++..=+. ...+.-.|...++.|.+
T Consensus 164 evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Clvk 243 (859)
T KOG1241|consen 164 EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVK 243 (859)
T ss_pred HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHH
Confidence 644321 2344444557888899999999988631 111123333322111 23456678888888877
Q ss_pred hhhcCch-----hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 002235 232 VCRTNKG-----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (949)
Q Consensus 232 ~~~~~p~-----~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l 306 (949)
+....-. -.+.++..-..-..|.++.|..+++.--.++- .+.+ .++..+-+..-....|.-++-+...+..+
T Consensus 244 Im~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic--eEEi-D~~~e~~e~~d~~~~p~~~~fa~~a~~~v 320 (859)
T KOG1241|consen 244 IMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC--EEEI-DLAIEYGEAVDQGLPPSSKYFARQALQDV 320 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHhhcCCCchhhHHHHHHHhHh
Confidence 6554322 22223334444566888999888887654432 1222 12333333332233344455555555444
Q ss_pred HhhChhhHHHHHHhheeccCCCCHHHHHH---HHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHH
Q 002235 307 RSSHRDIMVDLIMDVLRALNSPNLDIRRK---TLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH 383 (949)
Q Consensus 307 ~~~~p~~l~~~~~~il~~L~d~d~~Ir~~---aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~ 383 (949)
. |.+++-.-..= ..-.++|+.+.+- .|.+....+...-+..++.++...++ .+|..+|...+-+.|
T Consensus 321 ~---P~Ll~~L~kqd-e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~-------~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 321 V---PVLLELLTKQD-EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQ-------NPDWRNREAAVMAFG 389 (859)
T ss_pred h---HHHHHHHHhCC-CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcC-------CcchhhhhHHHHHHH
Confidence 3 33333211110 1345567777765 46777778888888888876654433 357788888888888
Q ss_pred HhHccCc------ccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccH------HHHHHHHHHHhcccchHHHHH
Q 002235 384 SCAIKFP------EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR------VSIITRLLDNFYQIRAARVCT 451 (949)
Q Consensus 384 ~la~kf~------~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~------~~~l~~L~~~l~~i~~~~v~~ 451 (949)
.+-. .| +.....++.++.++.|..-.+.......+..|....|+.. ...+.-|++-+.| .|.+..
T Consensus 390 SIl~-gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~ 466 (859)
T KOG1241|consen 390 SILE-GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVAS 466 (859)
T ss_pred hhhc-CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHH
Confidence 6543 22 2345677888888887766666556677777777766542 1234444444444 477778
Q ss_pred HHhhhcc
Q 002235 452 CALWIIG 458 (949)
Q Consensus 452 ~~lwiLG 458 (949)
.+.|.+-
T Consensus 467 N~CWAf~ 473 (859)
T KOG1241|consen 467 NVCWAFI 473 (859)
T ss_pred HHHHHHH
Confidence 8888764
No 54
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.89 E-value=0.034 Score=65.94 Aligned_cols=421 Identities=13% Similarity=0.161 Sum_probs=252.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHH-hCCCCCCchhHHHHHh--------hcCCCCcchhHHHHHHHHHHhhcCCCCCCC
Q 002235 21 EIKEALEGNDVPAKVDAMKKAIMLL-LNGETLPQLFITIVRY--------VLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (949)
Q Consensus 21 eir~~L~s~~~~~k~~aL~kli~l~-~~G~d~s~lf~~Vik~--------l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~ 91 (949)
-+.++|.+||.+-|+..||=+=.+. .-|-+-.++.++++-- =|+......|++++...+..++...+
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---- 715 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---- 715 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch----
Confidence 4677899999877765554332222 3455544443333321 23456677899999999999887642
Q ss_pred chHHHHHHHHHhhcCCCCHHHHHHHHHHhhc----CC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC-C
Q 002235 92 PEMILICQNLRNNLQHPNEYIRGVTLRFLCR----LN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-P 162 (949)
Q Consensus 92 ~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~----I~----~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l-~ 162 (949)
-.++-+..|+.|.+|-+|-.+..+..+ +. +..+.+.++..|.-++.+...-+. --+.+...+..- .
T Consensus 716 ----~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 716 ----PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALG 790 (1172)
T ss_pred ----HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHh
Confidence 356888889999999877766655554 43 456667788888888877554443 112222222210 0
Q ss_pred -CCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcch-------hhHHHHHHHHH-hhcCccChhHHHHHHHHHHHhh
Q 002235 163 -QGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ-------DRAINYLLTHV-DRVSEWGELLQMVVLELIRKVC 233 (949)
Q Consensus 163 -~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~-------~~ai~~L~~~l-~~i~~~~p~~q~~il~ll~~~~ 233 (949)
...-.++.+...+-..| +.+.+.|+.+|+.++..+.+ +.-+.+|-.++ ..++.-.|=..-.||..+..++
T Consensus 791 ~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 11111223322222334 78889999999887665432 11233332222 2234434443444454444433
Q ss_pred hc------CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-Ch-----HHHHHHHHHHHHHHccCCchHHHHHHHH
Q 002235 234 RT------NKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-AP-----TAIRAAANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 234 ~~------~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~-----~~l~~~a~~li~lll~~~d~nvr~iaL~ 301 (949)
.. .| =...++..|.++|++...-|+-.|+..+..+.. .| ...-.++--++.+|.++ ...+|-.+..
T Consensus 870 nvigm~km~p-Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~n 947 (1172)
T KOG0213|consen 870 NVIGMTKMTP-PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVN 947 (1172)
T ss_pred HhccccccCC-ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 21 12 246788899999999999999999998877642 12 22334566678887544 5689999999
Q ss_pred HHHHHHhh-Chh-hHHHHHHhheeccCCCCHHH---HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHH
Q 002235 302 RLNELRSS-HRD-IMVDLIMDVLRALNSPNLDI---RRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQ 376 (949)
Q Consensus 302 ~L~~l~~~-~p~-~l~~~~~~il~~L~d~d~~I---r~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~ 376 (949)
.+.-|+.. .|+ ++.. +++-|...++.- -..||.+....|.+=+ ++..|+.++.. ....++.
T Consensus 948 TfG~IakaIGPqdVLat----LlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt---VLPalmneYrt-------Pe~nVQn 1013 (1172)
T KOG0213|consen 948 TFGYIAKAIGPQDVLAT----LLNNLKVQERQNRVCTTVAIAIVAETCGPFT---VLPALMNEYRT-------PEANVQN 1013 (1172)
T ss_pred hhhHHHHhcCHHHHHHH----HHhcchHHHHHhchhhhhhhhhhhhhcCchh---hhHHHHhhccC-------chhHHHH
Confidence 99998863 554 2222 333444444443 4568888888888765 56677777542 3456788
Q ss_pred HHHHHHHHhHccCcccHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHhc-cc--chHH
Q 002235 377 MLIQAIHSCAIKFPEVASTVVHLLMDFLG----DSNVASAIDVIIFVREIIEMNPKL-RVSIITRLLDNFY-QI--RAAR 448 (949)
Q Consensus 377 ~lv~aI~~la~kf~~~~~~~l~~L~~lL~----~~~~~v~~e~i~~l~~ii~~~p~~-~~~~l~~L~~~l~-~i--~~~~ 448 (949)
-+.++++-+-+...+....|+-.+..+|. |....-.+.+..+++.+.-..|.. -+.++-||++++- .+ .+|.
T Consensus 1014 GVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPh 1093 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPH 1093 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChH
Confidence 88888876665555555566665555554 444334445677888776655554 3667888888763 32 2455
Q ss_pred HHHHHhhhcccCCCCCCcHHHHHHHHHHHhCCC
Q 002235 449 VCTCALWIIGEYCQSLSEVENGIATIKQCLGEL 481 (949)
Q Consensus 449 v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~~ 481 (949)
+..+ ..++++.++..+|.-
T Consensus 1094 viqa--------------~~e~~eg~r~~Lg~~ 1112 (1172)
T KOG0213|consen 1094 VIQA--------------FDEAMEGLRVALGPQ 1112 (1172)
T ss_pred HHHH--------------HHHHHHHHHHHhchH
Confidence 5543 345666777777654
No 55
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0014 Score=78.38 Aligned_cols=399 Identities=19% Similarity=0.213 Sum_probs=231.1
Q ss_pred HHHHHHHHHhCCCCCCc--hhHHHHHhh---cCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhcCCCCH
Q 002235 37 AMKKAIMLLLNGETLPQ--LFITIVRYV---LPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNNLQHPNE 110 (949)
Q Consensus 37 aL~kli~l~~~G~d~s~--lf~~Vik~l---~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv~NsL~KDL~~~N~ 110 (949)
-+||+.|+.+.-|-..+ +-...++.+ .+..+..+|-++-=-+..+ .. +.+ --.++.+++-++|.++
T Consensus 64 elKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v----~~i~ey~~~Pl~~~l~d~~~ 135 (734)
T KOG1061|consen 64 ELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL----RV----DKITEYLCDPLLKCLKDDDP 135 (734)
T ss_pred hHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE----ee----hHHHHHHHHHHHHhccCCCh
Confidence 46888887776554432 222222211 2445556665543322222 11 122 3578999999999999
Q ss_pred HHHHHHHHHhhcCC--chhhH--HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc-cccc-hHHHHHHHHc--cC
Q 002235 111 YIRGVTLRFLCRLN--ETEII--EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVD-APEMIEKVLS--TE 182 (949)
Q Consensus 111 ~iR~~ALr~L~~I~--~~el~--~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~-li~~-~~e~l~~~L~--~d 182 (949)
|+|--|--...++. ++++. ..+.+.++.++.|.+|-|--+|+-|+.-|.. ..++ .... ...++..+|. ++
T Consensus 136 yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e--~~~~~~~~~l~~~~~~~lL~al~e 213 (734)
T KOG1061|consen 136 YVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE--SHPSVNLLELNPQLINKLLEALNE 213 (734)
T ss_pred hHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH--hCCCCCcccccHHHHHHHHHHHHH
Confidence 99999888888874 44444 4588899999999999999999999999999 5653 1112 2233433331 22
Q ss_pred CChhHHHHHHHHHHhcchhh---HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchh----HHHHHHHHHHHHcCCc
Q 002235 183 QDPSAKRNAFLMLFTCDQDR---AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE----KGKYIKIIISLLNAPS 255 (949)
Q Consensus 183 ~d~~v~~~Al~~L~~i~~~~---ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~----~~~li~~L~~lL~s~s 255 (949)
-+.--+.--+..|..-.|.+ +.+.+-.+...+...++-.++..++++.+.....+.. ..++-+.+..++.+.+
T Consensus 214 c~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 214 CTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred hhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc
Confidence 22222222223333333332 2222222222333445555666666666554443332 2233334444444445
Q ss_pred hHHHHHHHHHHHcc-CCChHHHHHHHHHHHHHHccCCchH-HHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHH
Q 002235 256 TAVIYECAGTLVSL-SSAPTAIRAAANTYSQLLLSQSDNN-VKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIR 333 (949)
Q Consensus 256 ~aV~~Eaa~~l~~l-~~~~~~l~~~a~~li~lll~~~d~n-vr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir 333 (949)
.+.|-+.+-+..+ ...|+. ....+-.+|.+-.||- +|..-|+.+..++. +..++....++..--.+-|...-
T Consensus 294 -e~qyvaLrNi~lil~~~p~~---~~~~~~~Ff~kynDPiYvK~eKleil~~la~--~~nl~qvl~El~eYatevD~~fv 367 (734)
T KOG1061|consen 294 -EIQYVALRNINLILQKRPEI---LKVEIKVFFCKYNDPIYVKLEKLEILIELAN--DANLAQVLAELKEYATEVDVDFV 367 (734)
T ss_pred -hhhHHHHhhHHHHHHhChHH---HHhHhHeeeeecCCchhhHHHHHHHHHHHhh--HhHHHHHHHHHHHhhhhhCHHHH
Confidence 6777666655443 233442 3344455666777765 57777888777764 33344444444444456788899
Q ss_pred HHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccH
Q 002235 334 RKTLDIVLELITP-RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASA 412 (949)
Q Consensus 334 ~~aL~lL~~l~~~-~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~ 412 (949)
++++..+..++-. .-+...|..|+ ++..+ .-+...++++..|+.|-.+||.+.+.++..+-..+..-.+.-+
T Consensus 368 rkaIraig~~aik~e~~~~cv~~lL-ell~~------~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epea 440 (734)
T KOG1061|consen 368 RKAVRAIGRLAIKAEQSNDCVSILL-ELLET------KVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEA 440 (734)
T ss_pred HHHHHHhhhhhhhhhhhhhhHHHHH-HHHhh------cccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHH
Confidence 9999999987632 12256677666 33332 1246788999999999999999999999888777665444434
Q ss_pred H-HHHHHHHHHHHhCcccHHHHHHHHHHHhcccch------HHHHHHHhhhcccCCC
Q 002235 413 I-DVIIFVREIIEMNPKLRVSIITRLLDNFYQIRA------ARVCTCALWIIGEYCQ 462 (949)
Q Consensus 413 ~-e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~------~~v~~~~lwiLGEy~~ 462 (949)
. ..+..+.+-.+..|+ +.+.|-.+++...+ -+++.+++-+.+..++
T Consensus 441 k~amiWilg~y~~~i~~----a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 441 KAALIWILGEYAERIEN----ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT 493 (734)
T ss_pred HHHHHHHHhhhhhccCc----HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc
Confidence 4 345566666555554 44444444444332 2345555555555444
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0067 Score=72.18 Aligned_cols=380 Identities=16% Similarity=0.205 Sum_probs=210.6
Q ss_pred cCCChHHHHHHHHHHHHHHhCCCCC-----CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcC----------CCCCCC
Q 002235 27 EGNDVPAKVDAMKKAIMLLLNGETL-----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTD----------AKGRVL 91 (949)
Q Consensus 27 ~s~~~~~k~~aL~kli~l~~~G~d~-----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~----------~d~~l~ 91 (949)
++++.+-+..++.-+..+|++-|++ ...+|.++---|-|++.+++-.+-=||+.+..-. .|+.+.
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3455566678888888888887765 2434444433677999999999999999542211 122221
Q ss_pred c-----------hH-HHHHHHHHh-----hcCCCCH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHH
Q 002235 92 P-----------EM-ILICQNLRN-----NLQHPNE-YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAIL 153 (949)
Q Consensus 92 ~-----------e~-iLv~NsL~K-----DL~~~N~-~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~l 153 (949)
| .+ -...+.|.| |--+=|| .--|.-|-.++.....+|++++.|.|++.+..++-.=|-.|++
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavm 386 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVM 386 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHH
Confidence 1 22 234566666 2222344 3445567777888899999999999999999999999999999
Q ss_pred HHHHHhcCCCCccc------ccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH---H--HHHHHH-------Hhh--
Q 002235 154 AVMAIYKLPQGEQL------LVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA---I--NYLLTH-------VDR-- 213 (949)
Q Consensus 154 al~ki~~l~~~~~l------i~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a---i--~~L~~~-------l~~-- 213 (949)
|.+.+.. +|+- +++..+-+..++ .|+...|+..+...|+.+....+ . .++... +++
T Consensus 387 AFGSIl~---gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP 462 (859)
T KOG1241|consen 387 AFGSILE---GPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP 462 (859)
T ss_pred HHHhhhc---CCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc
Confidence 9999877 3432 334444444544 57777778777777776654321 1 011110 110
Q ss_pred -cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHH--ccC
Q 002235 214 -VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLL--LSQ 290 (949)
Q Consensus 214 -i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~ll--l~~ 290 (949)
+....-|+-..+.+-...-.+.++. +.+ ..+....++..+++-- .+.
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~q---------------t~~---------------~t~~y~~ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQ---------------TDP---------------ATPFYEAIIGSLLKVTDRADG 512 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCC---------------CCc---------------cchhHHHHHHHHHhhcccccc
Confidence 1111223333333222222221100 000 0011112233333211 123
Q ss_pred CchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccC
Q 002235 291 SDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEK 370 (949)
Q Consensus 291 ~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~ 370 (949)
.++|+|-.+.+.|.+|....|+.+.+.+..+ .+-++.++. +.++ .+...+.+ .+.
T Consensus 513 nqsNLR~AAYeALmElIk~st~~vy~~v~~~--------------~l~il~kl~------q~i~---~~~l~~~d--r~q 567 (859)
T KOG1241|consen 513 NQSNLRSAAYEALMELIKNSTDDVYPMVQKL--------------TLVILEKLD------QTIS---SQILSLAD--RAQ 567 (859)
T ss_pred chhhHHHHHHHHHHHHHHcCcHHHHHHHHHH--------------HHHHHHHHH------HHHH---HHhccHhh--HHH
Confidence 5689999999999999988887665543222 222222211 1111 11111110 011
Q ss_pred CHHHHHHHHHHHHHhHc----cCcccHHHHHHHHHHHHhCCCcc-cHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHh
Q 002235 371 NGEYRQMLIQAIHSCAI----KFPEVASTVVHLLMDFLGDSNVA-SAIDVIIFVREIIEMNPK----LRVSIITRLLDNF 441 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~----kf~~~~~~~l~~L~~lL~~~~~~-v~~e~i~~l~~ii~~~p~----~~~~~l~~L~~~l 441 (949)
-.+++..+-..|..+-. ++++..+.++..++.++...++. +-+++...+.-++..-.. --+.....|..-+
T Consensus 568 ~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL 647 (859)
T KOG1241|consen 568 LNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGL 647 (859)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 12444444444444433 56667778888888888874443 455566665555543221 1233455555556
Q ss_pred cccchHHHHHHHhhhcccCCCCCC
Q 002235 442 YQIRAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 442 ~~i~~~~v~~~~lwiLGEy~~~~~ 465 (949)
..+.+..+..+++-++|.-+...+
T Consensus 648 ~n~~e~qVc~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 648 SNFQEYQVCAAAVGLVGDLARALE 671 (859)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHH
Confidence 667778899999999998765444
No 57
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.70 E-value=0.065 Score=63.72 Aligned_cols=396 Identities=18% Similarity=0.207 Sum_probs=218.9
Q ss_pred CCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCC-
Q 002235 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHR- 143 (949)
Q Consensus 65 s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~- 143 (949)
..|+.-|-.+--.++.+++.. | +--++++++-|+.+.+||||--+-|+.+-+.+.-=++.+.|.++....++
T Consensus 452 ded~yar~egreIisnLakaa--G-----la~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~Skk 524 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAA--G-----LATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKK 524 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHh--h-----hHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcccc
Confidence 344444445544555554432 1 34567899999999999999999999988877777788888888888776
Q ss_pred ChHHHHHHHHHHHHHhcCCCCcccccc---hHHHHHHHHccCCChhH---HHHHHHHHHhcc------------------
Q 002235 144 HPYIRRNAILAVMAIYKLPQGEQLLVD---APEMIEKVLSTEQDPSA---KRNAFLMLFTCD------------------ 199 (949)
Q Consensus 144 ~pyVRk~A~lal~ki~~l~~~~~li~~---~~e~l~~~L~~d~d~~v---~~~Al~~L~~i~------------------ 199 (949)
+.--|+..+-++.+|.-+ .+-...+. ..++++..| .|....| ..+|+++|.+..
T Consensus 525 SwqaRhTgIkivqqIail-~Gcsvlphl~~lv~ii~~gl-~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 525 SWQARHTGIKIVQQIAIL-SGCSVLPHLKPLVKIIEHGL-KDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred chhhhchhhHHHHHHHHH-hcchhhhhhHHHHHHHHHhh-cccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 777788888888777764 34444444 357888876 5544444 345555555532
Q ss_pred --hhh---------HHHHHHH-----------------HHhhcCccChhHHHHHHHHHHHhhhcCchh----HHHHHHHH
Q 002235 200 --QDR---------AINYLLT-----------------HVDRVSEWGELLQMVVLELIRKVCRTNKGE----KGKYIKII 247 (949)
Q Consensus 200 --~~~---------ai~~L~~-----------------~l~~i~~~~p~~q~~il~ll~~~~~~~p~~----~~~li~~L 247 (949)
+++ |+.||+. +.+....+++=+.-.+|+++.+.|..+.-+ +..++..+
T Consensus 603 ir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~f 682 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEF 682 (1172)
T ss_pred HHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHH
Confidence 111 1112111 112223455555566666666666543111 11111111
Q ss_pred HHHH---------------------------------------cCCch----HHHHHHHHHHHccCCC---hHHHHHHHH
Q 002235 248 ISLL---------------------------------------NAPST----AVIYECAGTLVSLSSA---PTAIRAAAN 281 (949)
Q Consensus 248 ~~lL---------------------------------------~s~s~----aV~~Eaa~~l~~l~~~---~~~l~~~a~ 281 (949)
.... .+.++ +|.--+-+++..+... .........
T Consensus 683 f~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lid 762 (1172)
T KOG0213|consen 683 FFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLID 762 (1172)
T ss_pred HhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 1111 11111 1221122222222211 111122333
Q ss_pred HHHHHHccC-CchHHHHHHHHHHH-HHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcC---CCcHHHHHHHH
Q 002235 282 TYSQLLLSQ-SDNNVKLIVLDRLN-ELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT---PRNINEVVLML 356 (949)
Q Consensus 282 ~li~lll~~-~d~nvr~iaL~~L~-~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~~L 356 (949)
.++--|..+ .+-.+-+.++..+. .+..+-...+......++..|+++...+|..|++++..++- .--=+.++..|
T Consensus 763 gil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l 842 (1172)
T KOG0213|consen 763 GILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL 842 (1172)
T ss_pred HHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 333333221 11122333333322 12222111223334557778999999999999998875431 11112233333
Q ss_pred HHHHHHhccCCccCCHHHHHHHHHHHHHhHc------cCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc-
Q 002235 357 KKEVVKTQSGELEKNGEYRQMLIQAIHSCAI------KFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL- 429 (949)
Q Consensus 357 ~kel~~~~~~~~d~~~e~r~~lv~aI~~la~------kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~- 429 (949)
-.-|-.+.+ +..+|.---++.||..++. .+|+ ...++..|..+|++....+...+|.++..|..+.|+.
T Consensus 843 GvvLyEylg---eeypEvLgsILgAikaI~nvigm~km~pP-i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v 918 (1172)
T KOG0213|consen 843 GVVLYEYLG---EEYPEVLGSILGAIKAIVNVIGMTKMTPP-IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV 918 (1172)
T ss_pred hHHHHHhcC---cccHHHHHHHHHHHHHHHHhccccccCCC-hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC
Confidence 322333444 4567777777777776653 3555 4688999999999998889999999999999888874
Q ss_pred --HH--HHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHHHH
Q 002235 430 --RV--SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATIK 475 (949)
Q Consensus 430 --~~--~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~ 475 (949)
|+ .|.-.|++.|... ..+++|++.-.+|=.+. .-.|++.+..+.
T Consensus 919 ~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~Iak-aIGPqdVLatLl 966 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAK-AIGPQDVLATLL 966 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH-hcCHHHHHHHHH
Confidence 22 4555566655542 34688888887773332 223555555543
No 58
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.022 Score=66.94 Aligned_cols=324 Identities=14% Similarity=0.101 Sum_probs=160.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~-----~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~ 170 (949)
+..+.=.+-.......+|-.++.++..+.. +.--+.+...+.....|.++.||+.|+.++..+.. ... +-..
T Consensus 158 l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~k-L~~~ 234 (823)
T KOG2259|consen 158 LLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFK-LSKA 234 (823)
T ss_pred HHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--ccc-ccHH
Confidence 344444433333444455555555555432 22234455556667778888888888888777655 221 1111
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHh---cch--h-----------hHHHHHHHHHhhcCccChhHHHHHHHHHHHhhh
Q 002235 171 APEMIEKVLSTEQDPSAKRNAFLMLFT---CDQ--D-----------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCR 234 (949)
Q Consensus 171 ~~e~l~~~L~~d~d~~v~~~Al~~L~~---i~~--~-----------~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~ 234 (949)
.....-+.+ +|.+..|+.+|+.++.- .+| . ++...++..+++++ ++ ..+..-+.++.+-.
T Consensus 235 ~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~s-l~--VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 235 CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRS-LS--VRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCc-ee--eeehHHHHhchHHH
Confidence 122222333 77777888888665543 221 1 12223333333321 11 12333344433321
Q ss_pred cCchhHHHHHHHHHHHHcCCc--hHHHHHHHHHHHc---cCC-------ChHH------HH----HHHHHHHHHHccCCc
Q 002235 235 TNKGEKGKYIKIIISLLNAPS--TAVIYECAGTLVS---LSS-------APTA------IR----AAANTYSQLLLSQSD 292 (949)
Q Consensus 235 ~~p~~~~~li~~L~~lL~s~s--~aV~~Eaa~~l~~---l~~-------~~~~------l~----~~a~~li~lll~~~d 292 (949)
.. .+-+.+.|..-+-+.- -.-.-+..+.+.. +++ .|++ .. .++..++.-| .+.=
T Consensus 311 vS---ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl-EDEf 386 (823)
T KOG2259|consen 311 VS---EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL-EDEF 386 (823)
T ss_pred hH---HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec-hHHH
Confidence 11 1222233333222210 0111122222221 110 1110 00 1222333222 2233
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHHHhccCCccCC
Q 002235 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNIN-EVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~-~Iv~~L~kel~~~~~~~~d~~ 371 (949)
-+||-+|+..+..|+...|..-......+...++|+...+|.+|+..|..+.+.--+. +.++.+ ..... |.+
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~i----l~~L~---D~s 459 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQI----LESLE---DRS 459 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHH----HHHHH---hcC
Confidence 5788888898988888888876666666666778888888988888888776542221 122222 22222 345
Q ss_pred HHHHHHHHHHHHHhHccCccc--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 002235 372 GEYRQMLIQAIHSCAIKFPEV--ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDN 440 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~--~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~ 440 (949)
.+.|..+-.-++ +.+|+.. ..-++.-|++.|..- +.-..+++..++.|-+++|.+-..+..++.+.
T Consensus 460 ~dvRe~l~elL~--~~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 460 VDVREALRELLK--NARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhhHHHHHHHHHHh
Confidence 566665544443 2345543 345555555555432 23456677777777777777666666666654
No 59
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0041 Score=68.13 Aligned_cols=371 Identities=16% Similarity=0.158 Sum_probs=227.9
Q ss_pred CCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCc----hhh---HHHHHHHHH
Q 002235 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNE----TEI---IEPLIPSVL 137 (949)
Q Consensus 65 s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~----~el---~~~l~~~I~ 137 (949)
|++..+.|=.|++.-+.-... ++.---=+.-.++--++|+++-|...|=-.++++.. ..+ +-.+.+-|.
T Consensus 58 SDnlnlqrsaalafAeitek~----vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~ 133 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKG----VRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL 133 (550)
T ss_pred ccccccchHHHHHHHHHHHHH----HHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence 788888899998876652111 000001122355566899999999999999996632 111 123555667
Q ss_pred HhccCCChHHHHHHHHHHHHHhcCCCCcccccc----hHHHHHHHHccCCChhHHHHHHHHHHhcc---hhh-------H
Q 002235 138 QNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD----APEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDR-------A 203 (949)
Q Consensus 138 ~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~---~~~-------a 203 (949)
+.+.| +.-||++|+-|+..+.. ++..-++- ..+.+.+ |.+.+|..|+++|..+|..+- .++ +
T Consensus 134 qmmtd-~vevqcnaVgCitnLaT--~d~nk~kiA~sGaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 134 QMMTD-GVEVQCNAVGCITNLAT--FDSNKVKIARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HhcCC-CcEEEeeehhhhhhhhc--cccchhhhhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 77765 45689999999999988 54432221 2355556 678899999999999887653 222 3
Q ss_pred HHHHHHHHhhcCccChhHHHHHHHHHHHhh----------hcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCCh
Q 002235 204 INYLLTHVDRVSEWGELLQMVVLELIRKVC----------RTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAP 273 (949)
Q Consensus 204 i~~L~~~l~~i~~~~p~~q~~il~ll~~~~----------~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~ 273 (949)
+++|+.+++ ..++-.|-..-..+..++ ..+| ++++.|..+..+.++-|...|..++-.+.+..
T Consensus 210 lpvLVsll~---s~d~dvqyycttaisnIaVd~~~Rk~Laqaep----~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 210 LPVLVSLLK---SGDLDVQYYCTTAISNIAVDRRARKILAQAEP----KLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred chhhhhhhc---cCChhHHHHHHHHhhhhhhhHHHHHHHHhccc----chHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 567776654 334444544433333322 2233 57888999999999999999999999998765
Q ss_pred HHHHHHH-----HHHHHHHccCCchHHHHHHHHHHHHHHhhCh---hhH--HHHHHhheeccC-CCCHHHHHHHHHHHHh
Q 002235 274 TAIRAAA-----NTYSQLLLSQSDNNVKLIVLDRLNELRSSHR---DIM--VDLIMDVLRALN-SPNLDIRRKTLDIVLE 342 (949)
Q Consensus 274 ~~l~~~a-----~~li~lll~~~d~nvr~iaL~~L~~l~~~~p---~~l--~~~~~~il~~L~-d~d~~Ir~~aL~lL~~ 342 (949)
+..+.++ ..+++++.+..-| .-...+-.+..|+ .|| ..+ +.+..-+.++|. -++..|+.-|.++|..
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcc-cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 5444332 3466666332222 2222333333332 233 121 122333444554 3456799999999999
Q ss_pred hcC--CCcHHHHHH----HHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH----HHHHHHHHHHHhCCCcccH
Q 002235 343 LIT--PRNINEVVL----MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA----STVVHLLMDFLGDSNVASA 412 (949)
Q Consensus 343 l~~--~~Nv~~Iv~----~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~----~~~l~~L~~lL~~~~~~v~ 412 (949)
++. ++|+..|.. .+.+++.. |..-+|+.++--+|..++..-..+. ..+++.|+..+.+....+.
T Consensus 361 LAasse~n~~~i~esgAi~kl~eL~l------D~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 361 LAASSEHNVSVIRESGAIPKLIELLL------DGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HhhhhhhhhHHHhhcCchHHHHHHHh------cCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhc
Confidence 975 678777643 12234443 5677999999999999886432221 3567788888877776666
Q ss_pred HHHHHHHHHHHHh------------CcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 413 IDVIIFVREIIEM------------NPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 413 ~e~i~~l~~ii~~------------~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
..+..++.++... .|. +.+=..|.+++.+ ++.-+...+.|.+-+..
T Consensus 435 gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl~S-~~~tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 435 GNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFLAS-HELTFRHIARWTIQQLL 492 (550)
T ss_pred ccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence 6666666665432 232 3455667777654 23345566667665443
No 60
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.017 Score=67.91 Aligned_cols=374 Identities=16% Similarity=0.160 Sum_probs=199.9
Q ss_pred HHhCCCCCCchhHHHHHhhcCCCCcc-hhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHH--------
Q 002235 44 LLLNGETLPQLFITIVRYVLPSEDHT-IQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRG-------- 114 (949)
Q Consensus 44 l~~~G~d~s~lf~~Vik~l~~s~d~~-lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~-------- 114 (949)
.+..|.+.........+ ++.+.+.. .+...|-.+..+. ..|-...+=......+.+-.++.+.+-|-
T Consensus 125 ~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~ 200 (569)
T KOG1242|consen 125 VLSKGLSGEYVLELLLE-LLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFE 200 (569)
T ss_pred HHhhccCHHHHHHHHHH-HhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHH
Confidence 45567777777777777 54555554 3445555555441 11111011134456777777777664443
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch-HHHHHHHHccCCChhHHHHHHH
Q 002235 115 VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-PEMIEKVLSTEQDPSAKRNAFL 193 (949)
Q Consensus 115 ~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~-~e~l~~~L~~d~d~~v~~~Al~ 193 (949)
.+-..|+.-.+|-+++ +.|.|..+..|+.++||.+|..|.--+..- .++.-++.+ +..+..++ .+ ....+.+++.
T Consensus 201 ~~~~~Lg~~~EPyiv~-~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~-~~~~aVK~llpsll~~l~-~~-kWrtK~asle 276 (569)
T KOG1242|consen 201 AAQGNLGPPFEPYIVP-ILPSILTNFGDKINKVREAAVEAAKAIMRC-LSAYAVKLLLPSLLGSLL-EA-KWRTKMASLE 276 (569)
T ss_pred HHHHhcCCCCCchHHh-hHHHHHHHhhccchhhhHHHHHHHHHHHHh-cCcchhhHhhhhhHHHHH-HH-hhhhHHHHHH
Confidence 2335566667777754 568899999999999999999988777662 333334332 23443322 11 2222223322
Q ss_pred HHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC-
Q 002235 194 MLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA- 272 (949)
Q Consensus 194 ~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~- 272 (949)
+|.-+ ....|. |+.. ....+++.+.+.|..+.+.|+-.+..++..+...
T Consensus 277 llg~m----------------~~~ap~-qLs~-------------~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 277 LLGAM----------------ADCAPK-QLSL-------------CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred HHHHH----------------HHhchH-HHHH-------------HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 22210 011111 1000 1124556677777777777777777777666431
Q ss_pred -hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHH---HhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHh---hc-
Q 002235 273 -PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL---RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLE---LI- 344 (949)
Q Consensus 273 -~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l---~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~---l~- 344 (949)
...+...+..+++-+ .++.. ---..++.|..- ....+..+.-.+..+-+-+.+.+..++|++..+.-. ++
T Consensus 327 dN~dI~~~ip~Lld~l-~dp~~-~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 327 DNPDIQKIIPTLLDAL-ADPSC-YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred ccHHHHHHHHHHHHHh-cCccc-chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence 223555555665555 22221 111122222210 011233334444455567888888999888776654 45
Q ss_pred CCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH-HHHHHHHHHHHhCCCcc-cHHHHHHHHHHH
Q 002235 345 TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-STVVHLLMDFLGDSNVA-SAIDVIIFVREI 422 (949)
Q Consensus 345 ~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~-~~~l~~L~~lL~~~~~~-v~~e~i~~l~~i 422 (949)
++..+...+..|...+..... +..+|.|..+.++++.+-.+-.... +..+..+++.+++.... -.......+.++
T Consensus 405 Dp~~lapfl~~Llp~lk~~~~---d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~ev 481 (569)
T KOG1242|consen 405 DPKDLAPFLPSLLPGLKENLD---DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEV 481 (569)
T ss_pred CHHHHhhhHHHHhhHHHHHhc---CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHH
Confidence 677888888888888877654 5679999999999977654422111 33344444444443322 233345566666
Q ss_pred HHhCc-ccHHHHHHHHHHHh-cccchHHHHHHHhhhcccC
Q 002235 423 IEMNP-KLRVSIITRLLDNF-YQIRAARVCTCALWIIGEY 460 (949)
Q Consensus 423 i~~~p-~~~~~~l~~L~~~l-~~i~~~~v~~~~lwiLGEy 460 (949)
+...- +....++..+.... ...-.+.++-..+|+++=-
T Consensus 482 l~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~l 521 (569)
T KOG1242|consen 482 LAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLL 521 (569)
T ss_pred HhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhcc
Confidence 54221 11122222222221 1223456777788887643
No 61
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.60 E-value=0.022 Score=69.27 Aligned_cols=316 Identities=15% Similarity=0.196 Sum_probs=185.2
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHH
Q 002235 115 VTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLM 194 (949)
Q Consensus 115 ~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~ 194 (949)
.||...|-=....++-.+...++. .+.+..+|--|.+.++.+.+. ++..-.++++..+-+.+ +.++..|+.+|-.+
T Consensus 805 A~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr~-~~~s~~~e~~~~iieaf-~sp~edvksAAs~A 880 (1233)
T KOG1824|consen 805 AALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVFALLSLGELGRR-KDLSPQNELKDTIIEAF-NSPSEDVKSAASYA 880 (1233)
T ss_pred HHHHHhccccchhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhccC-CCCCcchhhHHHHHHHc-CCChHHHHHHHHHH
Confidence 344444443455555555544444 356777888888899988873 44444456666554545 78888999999999
Q ss_pred HHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhc-Cc----hhHHHHHHHHHHHHcCC---chHHHHHHHHHH
Q 002235 195 LFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRT-NK----GEKGKYIKIIISLLNAP---STAVIYECAGTL 266 (949)
Q Consensus 195 L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~-~p----~~~~~li~~L~~lL~s~---s~aV~~Eaa~~l 266 (949)
|..+.-..--.||.-++.++. ..|.-|-.+|.-+..+... .. ....+++..|..-.... +..|+-||..-+
T Consensus 881 LGsl~vgnl~~yLpfil~qi~-sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 881 LGSLAVGNLPKYLPFILEQIE-SQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred hhhhhcCchHhHHHHHHHHHh-cchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 999876443345544454442 3465566666666554322 11 23455555555444333 457888888888
Q ss_pred HccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh----HHHHHHhheeccCCCCHHHHHHHHHHHHh
Q 002235 267 VSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI----MVDLIMDVLRALNSPNLDIRRKTLDIVLE 342 (949)
Q Consensus 267 ~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~----l~~~~~~il~~L~d~d~~Ir~~aL~lL~~ 342 (949)
+.+.+. . +.. -++..+.+++++.|..++..+.-...-+|.. +++++.+|+.++.|+|..||+.||-++-.
T Consensus 960 ~l~epe--s---Llp-kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nS 1033 (1233)
T KOG1824|consen 960 VLIEPE--S---LLP-KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNS 1033 (1233)
T ss_pred HhCChH--H---HHH-HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 777542 2 222 2455668889999999999887666666654 45667799999999999999999999887
Q ss_pred hcC--CCcHHHHHHHHHHHHH----------HhccC-----CccCCHHHHHHHHHHHHHhHccCcc--cHHHHHHHHHHH
Q 002235 343 LIT--PRNINEVVLMLKKEVV----------KTQSG-----ELEKNGEYRQMLIQAIHSCAIKFPE--VASTVVHLLMDF 403 (949)
Q Consensus 343 l~~--~~Nv~~Iv~~L~kel~----------~~~~~-----~~d~~~e~r~~lv~aI~~la~kf~~--~~~~~l~~L~~l 403 (949)
-+. ++=|..++++|+-.+- +...+ -.|..-+.|+.+.+.+.++-..--. .....++++-.=
T Consensus 1034 aahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~G 1113 (1233)
T KOG1824|consen 1034 AAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDG 1113 (1233)
T ss_pred HHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhh
Confidence 663 3345555555543221 11110 1244567788877777665432111 011222222222
Q ss_pred HhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhc
Q 002235 404 LGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFY 442 (949)
Q Consensus 404 L~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~ 442 (949)
|.|. -++.-=....+..+....|..-..-+..+++-+.
T Consensus 1114 L~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1114 LEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred cchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 3222 1111112334445555667755555666666664
No 62
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.60 E-value=0.052 Score=62.66 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHhhhHHHHHHHHHHHHhhcCCCCCCCCCCC----ChHHHHHHHHHHhccC
Q 002235 560 AVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDN----DSFDRIVVCIRLLCNT 628 (949)
Q Consensus 560 ~~l~~~l~kl~~r~~~~~~~~~~~n~~~~~~~~~l~~~l~~~~~~~~~~~id~----d~~~r~~~~l~~l~~~ 628 (949)
.++-++|+||+-|+.+ +..|+.+.+.++-+..++...+...++ ....|+.-++.+|+.+
T Consensus 385 ~~lmt~laKLAsr~~d----------l~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P 447 (459)
T PF14764_consen 385 TVLMTALAKLASRSQD----------LIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP 447 (459)
T ss_pred HHHHHHHHHHHHhCHh----------hhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence 7999999999999985 567899999998887666543333332 2567777777777543
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.40 E-value=0.00064 Score=72.45 Aligned_cols=178 Identities=20% Similarity=0.242 Sum_probs=106.9
Q ss_pred cHHHHHHHh----cCCChHHHHHHHHHHHHHHhCC--CCCCchhHHHHH-------hhcCCCCcchhHHHHHHHHHHhhc
Q 002235 18 IANEIKEAL----EGNDVPAKVDAMKKAIMLLLNG--ETLPQLFITIVR-------YVLPSEDHTIQKLLLLYLEIIDKT 84 (949)
Q Consensus 18 ~~~eir~~L----~s~~~~~k~~aL~kli~l~~~G--~d~s~lf~~Vik-------~l~~s~d~~lKrL~YL~l~~~~~~ 84 (949)
+++++.+.| .+.+=.++.++|.+|-.+...| .+....|+..++ ..+.+....+=+-+...++.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~ 83 (228)
T PF12348_consen 4 EFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ 83 (228)
T ss_dssp --GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555 3445578889999999988888 344444443333 133455555656666666665443
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhh-HHHH-HHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 002235 85 DAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEI-IEPL-IPSVLQNLQHRHPYIRRNAILAVMAIYKLP 162 (949)
Q Consensus 85 ~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el-~~~l-~~~I~~~L~d~~pyVRk~A~lal~ki~~l~ 162 (949)
-.+ .+.+.+-.+...|.+=+.+++..+|..|-++|..|...-- ...+ .+.+.....|++|-||..++.++..+..
T Consensus 84 l~~-~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~-- 160 (228)
T PF12348_consen 84 LGS-HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILE-- 160 (228)
T ss_dssp HGG-GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT--
T ss_pred HhH-hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--
Confidence 222 1323445677899999999999999999888887754333 2344 7888889999999999999999999988
Q ss_pred CCc---ccc------cchHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002235 163 QGE---QLL------VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 163 ~~~---~li------~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~ 199 (949)
..+ ..+ +.+.+.+.+++ .|.|+.|+.+|-.++..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALY 205 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH
Confidence 455 222 22345566655 8999999998887766553
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.027 Score=66.20 Aligned_cols=362 Identities=13% Similarity=0.094 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHhhcC---CchhhHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcCCCCcccccchHHHHHHHHc-
Q 002235 106 QHPNEYIRGVTLRFLCRL---NETEIIEPLIPSVLQNLQHRHPY-IRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS- 180 (949)
Q Consensus 106 ~~~N~~iR~~ALr~L~~I---~~~el~~~l~~~I~~~L~d~~py-VRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~- 180 (949)
.|+++.+||+-|.+...+ ...+.+..+.|..-+.|+|.+-+ +|-+-+.=-+..-. +.+..-++...+++.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~--~~~~~d~~~~~~~~~~~~~ 104 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAF--HLQIVDPRPISIIEILLEE 104 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHH--hccccCcchhHHHHHHHHh
Confidence 678889999888877665 45677788888888888876544 44444444444444 333222333456665552
Q ss_pred -cCCChhHHHHHHHHHHhcchhh---H----HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCc---hhHHHHHHHHHH
Q 002235 181 -TEQDPSAKRNAFLMLFTCDQDR---A----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK---GEKGKYIKIIIS 249 (949)
Q Consensus 181 -~d~d~~v~~~Al~~L~~i~~~~---a----i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p---~~~~~li~~L~~ 249 (949)
+-+.+++++.....|....... + ...+.++++ ....+.| ..+..-+..+..... -....++..+..
T Consensus 105 ~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~--~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ 181 (569)
T KOG1242|consen 105 LDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT-STKIAER--AGAAYGLAGLVNGLGIESLKEFGFLDNLSK 181 (569)
T ss_pred cCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-cccHHHH--hhhhHHHHHHHcCcHHhhhhhhhHHHHHHH
Confidence 3344567776666665554321 1 222333443 2233333 222222222222221 123567888888
Q ss_pred HHcCCchHHHHH-----HHHHHHccCCC-hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh-ChhhHHHHHHhhe
Q 002235 250 LLNAPSTAVIYE-----CAGTLVSLSSA-PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-HRDIMVDLIMDVL 322 (949)
Q Consensus 250 lL~s~s~aV~~E-----aa~~l~~l~~~-~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~-~p~~l~~~~~~il 322 (949)
.++...++-..| ......++.+. ...+......++..+ ++..+.+|-++......+... .+..+.......+
T Consensus 182 ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll 260 (569)
T KOG1242|consen 182 AIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLL 260 (569)
T ss_pred HhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhH
Confidence 888776554444 11122233322 123333444445544 577889999999998877653 4455555555555
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC-cccHHHHHHH
Q 002235 323 RALNSPNLDIRRKTLDIVLELITPR--NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-PEVASTVVHL 399 (949)
Q Consensus 323 ~~L~d~d~~Ir~~aL~lL~~l~~~~--Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf-~~~~~~~l~~ 399 (949)
.-+.+..+--+.-+++++..++... -+..-+..+...+...+. |-..+.|...+.+|..++..- .+....+++.
T Consensus 261 ~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~---DT~~evr~a~~~~l~~~~svidN~dI~~~ip~ 337 (569)
T KOG1242|consen 261 GSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW---DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPT 337 (569)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc---cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4555556666777888888776543 334444444444444444 667899999999998888643 2346789999
Q ss_pred HHHHHhCCCcccHHHHHH------HHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHH
Q 002235 400 LMDFLGDSNVASAIDVII------FVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIAT 473 (949)
Q Consensus 400 L~~lL~~~~~~v~~e~i~------~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~ 473 (949)
|++.+.+...++. +++. |+..+- +....-++.-|-+-+.+ ++...++..+-++|.-+-..+++...-.+
T Consensus 338 Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~---~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 338 LLDALADPSCYTP-ECLDSLGATTFVAEVD---APSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HHHHhcCcccchH-HHHHhhcceeeeeeec---chhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 9999998764432 2222 222221 22222333333333333 45677899999999999999888877777
Q ss_pred HHHHhCCC
Q 002235 474 IKQCLGEL 481 (949)
Q Consensus 474 i~~~l~~~ 481 (949)
+-.++.++
T Consensus 413 l~~Llp~l 420 (569)
T KOG1242|consen 413 LPSLLPGL 420 (569)
T ss_pred HHHHhhHH
Confidence 65555433
No 65
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.24 E-value=0.0016 Score=58.01 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=60.1
Q ss_pred HHHHHhc-cCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHh
Q 002235 134 PSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVD 212 (949)
Q Consensus 134 ~~I~~~L-~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~ 212 (949)
|.+.+.+ .|++++||..|+.++.++.. + +..+.+..++ .|+|+.|+..|+.+|..+..+++++.|.+.+.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~----~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~ 72 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----P----EAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQ 72 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----H----HHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 4566666 89999999999999996543 2 3445565656 89999999999999999987777787777665
Q ss_pred hcCccChhHHHHHHHH
Q 002235 213 RVSEWGELLQMVVLEL 228 (949)
Q Consensus 213 ~i~~~~p~~q~~il~l 228 (949)
+ ..++..+...++.
T Consensus 73 ~--~~~~~vr~~a~~a 86 (88)
T PF13646_consen 73 D--DDDEVVREAAAEA 86 (88)
T ss_dssp C---SSHHHHHHHHHH
T ss_pred C--CCcHHHHHHHHhh
Confidence 3 2233334444443
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.2 Score=58.33 Aligned_cols=337 Identities=15% Similarity=0.144 Sum_probs=176.5
Q ss_pred chHHH-HHHHHHhhcCCCCH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc
Q 002235 92 PEMIL-ICQNLRNNLQHPNE-YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (949)
Q Consensus 92 ~e~iL-v~NsL~KDL~~~N~-~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~ 169 (949)
++.-| +-=+|++.|...+| .-.+.+=|-++ ..+|.-+.+-.-.++.|.++.|-.--.|+-.+..|... .-|. .
T Consensus 55 ~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~-Elp~--~ 129 (858)
T COG5215 55 DQLRMVAGLILKNSLHANDPELQKGCSQRWLG--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM-ELPN--S 129 (858)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hCcc--c
Confidence 56633 33456666666655 55678888888 66777888888888888889998888888888777663 1111 1
Q ss_pred chHHHHHHHH---ccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHH
Q 002235 170 DAPEMIEKVL---STEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKI 246 (949)
Q Consensus 170 ~~~e~l~~~L---~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~ 246 (949)
.|+++++.+. ..++-..++++++..+..++...+-+-|....+. ++--+..+++.
T Consensus 130 ~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~-----------il~aiv~ga~k----------- 187 (858)
T COG5215 130 LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNV-----------ILFAIVMGALK----------- 187 (858)
T ss_pred cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhH-----------HHHHHHHhhcc-----------
Confidence 3666665543 2344456788888777666543322222221110 01111111111
Q ss_pred HHHHHcCCchHHHHHHHHHHHc-cC------CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHH
Q 002235 247 IISLLNAPSTAVIYECAGTLVS-LS------SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIM 319 (949)
Q Consensus 247 L~~lL~s~s~aV~~Eaa~~l~~-l~------~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~ 319 (949)
+.++.+|++.|.+++.. +. ..........+.++.. -..+|-++.-.+...|.+|..-+-..++.+..
T Consensus 188 -----~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea-tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 188 -----NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA-TQGNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred -----cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345677766666654 21 0111111111111111 24567777777777777776644444443322
Q ss_pred h-----heeccCCCCHHHHHHHHHHHHhhcCCCc-----------------------HHHHHHHHHHHHHHhccCCccCC
Q 002235 320 D-----VLRALNSPNLDIRRKTLDIVLELITPRN-----------------------INEVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 320 ~-----il~~L~d~d~~Ir~~aL~lL~~l~~~~N-----------------------v~~Iv~~L~kel~~~~~~~~d~~ 371 (949)
. ..+...+++..|+..|++.-..+|.+++ +.+|+.+|++-+.+.-..-++.+
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 2 1234567888898888887766665543 45566666654444211000112
Q ss_pred HHHHHHHHHHHHHhHccCccc-HHH----HHHHHHHHHhCCCcccHHHHHHHHHHHHHh-CcccHHHHHHHHHHHhcccc
Q 002235 372 GEYRQMLIQAIHSCAIKFPEV-AST----VVHLLMDFLGDSNVASAIDVIIFVREIIEM-NPKLRVSIITRLLDNFYQIR 445 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~-~~~----~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~-~p~~~~~~l~~L~~~l~~i~ 445 (949)
......+ +.|-..|.+. -+. ++.|+-.-++.++-.-.+.++.++..+++. ....+.+++..++.-|+...
T Consensus 342 Wn~smaA----~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m 417 (858)
T COG5215 342 WNPSMAA----SSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM 417 (858)
T ss_pred cchhhhH----HHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence 2222222 2222222221 122 333333333333333444456666666642 23345566666666554322
Q ss_pred -hH--HHHHHHhhhcccCCCCCC
Q 002235 446 -AA--RVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 446 -~~--~v~~~~lwiLGEy~~~~~ 465 (949)
++ .++...+|++|..+++.+
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHH
Confidence 22 479999999998776654
No 67
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.15 E-value=0.15 Score=60.55 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=152.2
Q ss_pred CCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCCh
Q 002235 108 PNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDP 185 (949)
Q Consensus 108 ~N~~iR~~ALr~L~~I--~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~ 185 (949)
.++-..-+|-.++.+. .-|++.+..+.++..+.+|.+.-||+.|+-.+..+.+ ..|+.+++..+++-++|..| |+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck--~~~~~v~kvaDvL~QlL~td-d~ 110 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCK--DNPEHVSKVADVLVQLLQTD-DP 110 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG----T--T-HHHHHHHHHHHTT----H
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH--hHHHHHhHHHHHHHHHHhcc-cH
Confidence 4566777788888776 4699999999999999999999999999999999999 78999999999999977444 43
Q ss_pred ---hHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhc------Cc-hhH-HHHHHHHHHHHcCC
Q 002235 186 ---SAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRT------NK-GEK-GKYIKIIISLLNAP 254 (949)
Q Consensus 186 ---~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~------~p-~~~-~~li~~L~~lL~s~ 254 (949)
.++.+|+..|...++...+.-|...+......++-....+|++|..-... .| .+. ..+++.+..+|+.-
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDV 190 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhc
Confidence 46777887777777765544443333211245677788899988643321 21 233 34556777777653
Q ss_pred chHHHHHHHHHHHccC------CChHHHHHHHHHHHHHH-c----cCCchHHHHHHHHHHHHHHh----------hChhh
Q 002235 255 STAVIYECAGTLVSLS------SAPTAIRAAANTYSQLL-L----SQSDNNVKLIVLDRLNELRS----------SHRDI 313 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~------~~~~~l~~~a~~li~ll-l----~~~d~nvr~iaL~~L~~l~~----------~~p~~ 313 (949)
. +.-|+-.-.++... ..++..+.++.-+.... + ..+|+. .++++..-.. ....+
T Consensus 191 T-aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e----~Idrli~C~~~Alp~fs~~v~Sskf 265 (556)
T PF05918_consen 191 T-AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPE----SIDRLISCLRQALPFFSRGVSSSKF 265 (556)
T ss_dssp --HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHH----HHHHHHHHHHHHGGG-BTTB--HHH
T ss_pred c-HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHH----HHHHHHHHHHHhhHHhcCCCChHHH
Confidence 3 34444443333321 12333333444333322 1 223322 2222222111 11234
Q ss_pred HHHHHHhheeccCCCCHHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHhccCC---ccCCHHHHHHHHHHHHHhHc
Q 002235 314 MVDLIMDVLRALNSPNLDIRRKTLDIVLELIT---PRNINEVVLMLKKEVVKTQSGE---LEKNGEYRQMLIQAIHSCAI 387 (949)
Q Consensus 314 l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~~L~kel~~~~~~~---~d~~~e~r~~lv~aI~~la~ 387 (949)
|.-....++..+++=+...|..-|.++..++. ......+++.+..-|..|+... .+-+-.+...+.-+.|.||.
T Consensus 266 v~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~ 345 (556)
T PF05918_consen 266 VNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLAR 345 (556)
T ss_dssp HHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhh
Confidence 44445557777777777788877877777654 2235666666655555565411 01223566777777888888
Q ss_pred cCccc
Q 002235 388 KFPEV 392 (949)
Q Consensus 388 kf~~~ 392 (949)
+.|..
T Consensus 346 k~p~~ 350 (556)
T PF05918_consen 346 KSPNS 350 (556)
T ss_dssp T-THH
T ss_pred hCcch
Confidence 87753
No 68
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.0034 Score=77.76 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHhhcCC--chhhHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccC
Q 002235 106 QHPNEYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTE 182 (949)
Q Consensus 106 ~~~N~~iR~~ALr~L~~I~--~~el~~~l~~~I~~~L~-d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d 182 (949)
.+.||.++..|-=+||++. +.+.++.=+|.+...++ +++|.||.++++|++-+.- .+|.+++.|.+.++..| .|
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav--~fpnlie~~T~~Ly~rL-~D 1009 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV--RFPNLIEPWTEHLYRRL-RD 1009 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhh--hcccccchhhHHHHHHh-cC
Confidence 4567899999999999875 78888888888888887 8999999999999999888 89999999999998877 89
Q ss_pred CChhHHHHHHHHHHhc
Q 002235 183 QDPSAKRNAFLMLFTC 198 (949)
Q Consensus 183 ~d~~v~~~Al~~L~~i 198 (949)
.+++|+.+|+.+|.++
T Consensus 1010 ~~~~vRkta~lvlshL 1025 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHL 1025 (1251)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999887654
No 69
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.46 Score=55.38 Aligned_cols=377 Identities=17% Similarity=0.191 Sum_probs=208.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCC------chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCC----chHH---
Q 002235 29 NDVPAKVDAMKKAIMLLLNGETLP------QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL----PEMI--- 95 (949)
Q Consensus 29 ~~~~~k~~aL~kli~l~~~G~d~s------~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~----~e~i--- 95 (949)
++.+-...++--+-.+|++-|++= -++---++ .|-|++-+++-..--||+.+..-.-||++. ||+-
T Consensus 233 ~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~-~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn 311 (858)
T COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGR-FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQN 311 (858)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhh
Confidence 344444455555556666666652 23333455 578999999999999996654333344431 1100
Q ss_pred -------H--HHHHHHhhcC--CC-------CH-HHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 002235 96 -------L--ICQNLRNNLQ--HP-------NE-YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVM 156 (949)
Q Consensus 96 -------L--v~NsL~KDL~--~~-------N~-~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ 156 (949)
. +.--|.+-|. ++ |+ .--|.-|...+.++..-+++++...|.+++...+-.=|-+|++|.+
T Consensus 312 ~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 312 HGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhh
Confidence 0 1111222221 22 33 3345567777778888899999999999999999999999999999
Q ss_pred HHhcCCCCcc------cccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH--HH-----------HHHHHHhh--cC
Q 002235 157 AIYKLPQGEQ------LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--IN-----------YLLTHVDR--VS 215 (949)
Q Consensus 157 ki~~l~~~~~------li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a--i~-----------~L~~~l~~--i~ 215 (949)
.+.. +|. +++++.+-++... +|+-..|+..+.-.++.|..+-| +. -|..+.+. +.
T Consensus 392 Svm~---gp~~~~lT~~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~ 467 (858)
T COG5215 392 SVMH---GPCEDCLTKIVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRS 467 (858)
T ss_pred hhhc---CccHHHHHhhHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHH
Confidence 9877 332 2344444444432 45555566666666776654422 10 01111100 11
Q ss_pred ccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHH
Q 002235 216 EWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNV 295 (949)
Q Consensus 216 ~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nv 295 (949)
....|....++.-+.+..+.-|+-..+++..+.. .++.. -.+ ..+++|.
T Consensus 468 ~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~----------------------------~Lv~~-t~~--~~Ne~n~ 516 (858)
T COG5215 468 INCSWRKENLVDHIAKAVREVESFLAKFYLAILN----------------------------ALVKG-TEL--ALNESNL 516 (858)
T ss_pred hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHH----------------------------HHHHH-HHh--hccchhH
Confidence 2234444444444444333322222222222111 11100 111 2456789
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHH
Q 002235 296 KLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYR 375 (949)
Q Consensus 296 r~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r 375 (949)
|-.+...|..|...-|+.+.+....|. ++-.++|+--..+-. |+-. +..++ .-+|++
T Consensus 517 R~s~fsaLgtli~~~~d~V~~~~a~~~--------~~~~~kl~~~isv~~--q~l~----~eD~~---------~~~elq 573 (858)
T COG5215 517 RVSLFSALGTLILICPDAVSDILAGFY--------DYTSKKLDECISVLG--QILA----TEDQL---------LVEELQ 573 (858)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHH--------HHHHHHHHHHHHHhh--hhhh----hHHHH---------HHHHHH
Confidence 999999999988888888777554443 133333432222100 0000 00000 013566
Q ss_pred HHHHHHHHHhHccCcc----cHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHhCcccH----HHHHHHHHHHhcccch
Q 002235 376 QMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDSNV-ASAIDVIIFVREIIEMNPKLR----VSIITRLLDNFYQIRA 446 (949)
Q Consensus 376 ~~lv~aI~~la~kf~~----~~~~~l~~L~~lL~~~~~-~v~~e~i~~l~~ii~~~p~~~----~~~l~~L~~~l~~i~~ 446 (949)
...+.-|..+..++++ +.+..++.++.+|....+ .+..++...|..+...-.+.. ++.+..|...+ .+.+
T Consensus 574 SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d 652 (858)
T COG5215 574 SNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTD 652 (858)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchh
Confidence 6666666666667765 456788888888887744 455668788887765323322 34555555555 5666
Q ss_pred HHHHHHHhhhcccCCCCCC
Q 002235 447 ARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 447 ~~v~~~~lwiLGEy~~~~~ 465 (949)
..+...++-++|..+....
T Consensus 653 ~~v~~~avglvgdlantl~ 671 (858)
T COG5215 653 RFVLNSAVGLVGDLANTLG 671 (858)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7788888888887765443
No 70
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=1.3 Score=53.05 Aligned_cols=304 Identities=15% Similarity=0.187 Sum_probs=163.7
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCC--cchhHHHHHHHHHHhhcCCCCCCCchHH
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSED--HTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d--~~lKrL~YL~l~~~~~~~~d~~l~~e~i 95 (949)
+.++|.+.++..+..--.+...|+. -|..-+.+++=|..++++++.-+. .---|++=+....+..+ ++.++-.|++
T Consensus 6 r~~~If~k~Q~s~agh~~kl~~k~~-em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl-~q~d~e~DlV 83 (892)
T KOG2025|consen 6 RMQLIFNKIQQSDAGHYSKLLAKVM-EMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESL-PQLDKEEDLV 83 (892)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHH-HhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhh-hccCchhhHH
Confidence 5677777777655433222222222 122234567778888887766433 22234333333333222 2222223421
Q ss_pred -HHHHHHHhhcCCCCHHHHHHHHHHhhcCCc------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 96 -LICQNLRNNLQHPNEYIRGVTLRFLCRLNE------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 96 -Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~------~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
-..=.+.+-..+++--||=..+.-|..+.+ .++...+...+..-+.|+.|.||.-|+.|+.++-..|.+|+.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~- 162 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC- 162 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence 122345566678888888888777777654 556666777777778999999999999999997642222221
Q ss_pred cchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHH
Q 002235 169 VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIII 248 (949)
Q Consensus 169 ~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~ 248 (949)
+...++..++.+|+++-|+++|+..+.- ++. ..++++.--.+++... -.+.-=+++.++ +.-.-...+.+.++.
T Consensus 163 -~v~n~l~~liqnDpS~EVRRaaLsnI~v-dns-Tlp~IveRarDV~~an--RrlvY~r~lpki-d~r~lsi~krv~Lle 236 (892)
T KOG2025|consen 163 -PVVNLLKDLIQNDPSDEVRRAALSNISV-DNS-TLPCIVERARDVSGAN--RRLVYERCLPKI-DLRSLSIDKRVLLLE 236 (892)
T ss_pred -cHHHHHHHHHhcCCcHHHHHHHHHhhcc-Ccc-cchhHHHHhhhhhHHH--HHHHHHHhhhhh-hhhhhhHHHHHHHHH
Confidence 2446676777899999999998765432 221 2455544333322111 011112222222 111112235567777
Q ss_pred HHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHH---HHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheecc
Q 002235 249 SLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQ---LLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL 325 (949)
Q Consensus 249 ~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~---lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L 325 (949)
.-|....-+|.-.+++.|.+- -++.+...++. .+--+....++--+|+.|-+. ..+.+...-..+ +...
T Consensus 237 wgLnDRe~sVk~A~~d~il~~-----Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~--v~e~v~~~k~f~-~~~~ 308 (892)
T KOG2025|consen 237 WGLNDREFSVKGALVDAILSG-----WLRFSDGNILELLERLDVSNSSEVAVKALEALFSG--VREDVGSCKNFD-LILV 308 (892)
T ss_pred HhhhhhhhHHHHHHHHHHHHH-----HhhhccccHHHHHHHhccccchHHHHHHHHHHHHH--HHHHhhhhhccc-chhh
Confidence 778888899999999998761 11222222333 232222235666666666553 233333322222 2356
Q ss_pred CCCCHHHHHHHHH
Q 002235 326 NSPNLDIRRKTLD 338 (949)
Q Consensus 326 ~d~d~~Ir~~aL~ 338 (949)
.|..+.|.-.-..
T Consensus 309 ~~~t~Eiaf~~~a 321 (892)
T KOG2025|consen 309 EDLTPEIAFLWCA 321 (892)
T ss_pred hcccHHHHHHHHH
Confidence 7777777544333
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.79 Score=59.12 Aligned_cols=346 Identities=14% Similarity=0.139 Sum_probs=191.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhH--HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHH
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE--TEII--EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEM 174 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~--~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~ 174 (949)
+.|.-=|..|-.-+|.-|||+|+.|.+ |.++ +.+-..|..-+.|.+..||-+|+--+++..- ..|++++++.+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl--~~~e~~~qyY~~ 896 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL--SIPELIFQYYDQ 896 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--ccHHHHHHHHHH
Confidence 555556667888999999999999864 3332 3345566667889999999999999999887 789998887654
Q ss_pred HHHHHccCCChhHHHHHHHHHHhcchhhH-----HHHHHHHHhhc-----------------------------------
Q 002235 175 IEKVLSTEQDPSAKRNAFLMLFTCDQDRA-----INYLLTHVDRV----------------------------------- 214 (949)
Q Consensus 175 l~~~L~~d~d~~v~~~Al~~L~~i~~~~a-----i~~L~~~l~~i----------------------------------- 214 (949)
+-.-+ .|+..+|+..++..+.+++.+.+ ..-+.+++.++
T Consensus 897 i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k 975 (1692)
T KOG1020|consen 897 IIERI-LDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK 975 (1692)
T ss_pred HHhhc-CCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence 43334 68888999999999999874320 00011111111
Q ss_pred ------------CccChhHHHHHHHHHHHhhhc------Cc---hhHHHHHHHHHHHHcC-------------CchHHHH
Q 002235 215 ------------SEWGELLQMVVLELIRKVCRT------NK---GEKGKYIKIIISLLNA-------------PSTAVIY 260 (949)
Q Consensus 215 ------------~~~~p~~q~~il~ll~~~~~~------~p---~~~~~li~~L~~lL~s-------------~s~aV~~ 260 (949)
.....|.+-.+..++..+... .| ......++++..+|.. .+..-.+
T Consensus 976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen 976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence 123445444444444333210 01 0112223333333221 2334556
Q ss_pred HHHHHHHccCCC-hHHHH----HHHHHHHHHHc-cCCchHHHHHHHHHHHHHHhh--Ch-h-hHHHHHHhheeccCCCCH
Q 002235 261 ECAGTLVSLSSA-PTAIR----AAANTYSQLLL-SQSDNNVKLIVLDRLNELRSS--HR-D-IMVDLIMDVLRALNSPNL 330 (949)
Q Consensus 261 Eaa~~l~~l~~~-~~~l~----~~a~~li~lll-~~~d~nvr~iaL~~L~~l~~~--~p-~-~l~~~~~~il~~L~d~d~ 330 (949)
++..+|..++.. |..+- ....+|+..-. +..+.-+-|.++..|...... +| + ++...-.+++..+---+.
T Consensus 1056 ~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~ 1135 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM 1135 (1692)
T ss_pred HHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch
Confidence 667776665432 32221 12344443211 112334455555555544432 22 2 222222233333333344
Q ss_pred HHHHHHHHHHHhhcCC--CcHHHHHHHH---HHHHHHhccCCccC----CHHHHHHHHHHHHHhHcc--Ccc--------
Q 002235 331 DIRRKTLDIVLELITP--RNINEVVLML---KKEVVKTQSGELEK----NGEYRQMLIQAIHSCAIK--FPE-------- 391 (949)
Q Consensus 331 ~Ir~~aL~lL~~l~~~--~Nv~~Iv~~L---~kel~~~~~~~~d~----~~e~r~~lv~aI~~la~k--f~~-------- 391 (949)
..-..+.--+.++++. +|+..+-..+ .+.+...-++..+. ...--...+-.+|-++.- |+.
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence 4555666777778875 6665544333 33222211111111 112234456666777752 221
Q ss_pred ------cHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc--HHHHHHHHHHHhcccchH
Q 002235 392 ------VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL--RVSIITRLLDNFYQIRAA 447 (949)
Q Consensus 392 ------~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~l~~L~~~l~~i~~~ 447 (949)
..+.|+..|+-+.++..+.+...++..+..+.-++|.. ++.+..-+++.|.+...+
T Consensus 1216 ~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSD 1279 (1692)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhccc
Confidence 23578888888888888888888999999998888885 455666666667664443
No 72
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.91 E-value=0.29 Score=60.31 Aligned_cols=209 Identities=20% Similarity=0.321 Sum_probs=129.4
Q ss_pred chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH--HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCc-hhhH
Q 002235 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM--ILICQNLRNNLQHPNEYIRGVTLRFLCRLNE-TEII 129 (949)
Q Consensus 53 ~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~--iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~-~el~ 129 (949)
.++...++ ++.+++.++.-++.-+++.++-..++ +.+| .=++..|.|-+.++|+-.+-.|||.|.++.. +++-
T Consensus 290 ~iV~~Lv~-~Ldr~n~ellil~v~fLkkLSi~~EN---K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R 365 (708)
T PF05804_consen 290 GIVSLLVK-CLDRENEELLILAVTFLKKLSIFKEN---KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR 365 (708)
T ss_pred CCHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHH---HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 56777788 55888888888888888887655433 3555 2366889999999999999999999999973 3332
Q ss_pred HH-----HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc--cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh
Q 002235 130 EP-----LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL--VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 130 ~~-----l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li--~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
+. ++|.+...|.+++ .|..|+-.+|++...+.....+ .+..+.+-++|...+++.+...++.++..+..+.
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 22 5677888887643 4444555566655410111111 1223333344445566666666666666654332
Q ss_pred H-HHH------HHHHHhh-cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHH---HHcC-CchHHHHHHHHHHHccC
Q 002235 203 A-INY------LLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS---LLNA-PSTAVIYECAGTLVSLS 270 (949)
Q Consensus 203 a-i~~------L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~---lL~s-~s~aV~~Eaa~~l~~l~ 270 (949)
. .+. |..+++. +...+|. ++++++.++..++.....|.+++.+ ++.+ .+.....||..++.+++
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 1 111 2222222 2234443 5677777777776666666666554 3444 46779999999999996
Q ss_pred C
Q 002235 271 S 271 (949)
Q Consensus 271 ~ 271 (949)
.
T Consensus 520 ~ 520 (708)
T PF05804_consen 520 I 520 (708)
T ss_pred c
Confidence 3
No 73
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.67 Score=49.61 Aligned_cols=253 Identities=16% Similarity=0.154 Sum_probs=149.4
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHH
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILI 97 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv 97 (949)
+...|++.|..++. --..-.+.++.+-..|.+.+ .-.|.+ .+-..+-.+|.=+-+++.+. .++ + +
T Consensus 4 ~i~~i~~~L~~~s~-~l~~r~rALf~Lr~l~~~~~--i~~i~k-a~~d~s~llkhe~ay~LgQ~--~~~------~---A 68 (289)
T KOG0567|consen 4 EIETIGNILVNKSQ-PLQNRFRALFNLRNLLGPAA--IKAITK-AFIDDSALLKHELAYVLGQM--QDE------D---A 68 (289)
T ss_pred HHHHHHHHHcCccH-HHHHHHHHHHhhhccCChHH--HHHHHH-hcccchhhhccchhhhhhhh--ccc------h---h
Confidence 34567777776332 12245566777766665554 334444 44344445666666666766 222 1 2
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC--------------
Q 002235 98 CQNLRNNLQ--HPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-------------- 161 (949)
Q Consensus 98 ~NsL~KDL~--~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l-------------- 161 (949)
++.+..=|+ +..|+||--|-.+|+.+..++..+.+. +...|+..-||-...+|+.++-..
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~~~~~~~l~----k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S 144 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGDPESLEILT----KYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS 144 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcchhhHHHHH----HHhcCCccccchHHHHHHHHHHHhhccccccccCcccc
Confidence 344444443 456899999999999999888877664 455899999999988888877542
Q ss_pred --CCCcccccchHHHHHHHHccCCChh-HHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCch
Q 002235 162 --PQGEQLLVDAPEMIEKVLSTEQDPS-AKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG 238 (949)
Q Consensus 162 --~~~~~li~~~~e~l~~~L~~d~d~~-v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~ 238 (949)
|..|.-..++.++-.. |+..+-+. -++.|...|..+.-+.++.-|..- +...+..++..+--+|+.+. .|.
T Consensus 145 vdPa~p~~~ssv~~lr~~-lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~---l~~~SalfrhEvAfVfGQl~--s~~ 218 (289)
T KOG0567|consen 145 VDPAPPANLSSVHELRAE-LLDETKPLFERYRAMFYLRNIGTEEAINALIDG---LADDSALFRHEVAFVFGQLQ--SPA 218 (289)
T ss_pred CCCCCccccccHHHHHHH-HHhcchhHHHHHhhhhHhhccCcHHHHHHHHHh---cccchHHHHHHHHHHHhhcc--chh
Confidence 0111111122233333 33444443 456666667777667676655433 33447777888777777762 232
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 002235 239 EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRL 303 (949)
Q Consensus 239 ~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L 303 (949)
-...+.+.|.. ...+++|+-|||.+|..+... .+..+++-++.+.++-|+--+.-.|
T Consensus 219 ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa~e------~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 219 AIPSLIKVLLD--ETEHPMVRHEAAEALGAIADE------DCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred hhHHHHHHHHh--hhcchHHHHHHHHHHHhhcCH------HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22222222222 234789999999999998753 2333455566777766665443333
No 74
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.24 Score=54.80 Aligned_cols=318 Identities=15% Similarity=0.142 Sum_probs=192.6
Q ss_pred HhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhh-------HHHH
Q 002235 60 RYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEI-------IEPL 132 (949)
Q Consensus 60 k~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el-------~~~l 132 (949)
.++++|.|..+..-+--.+..++-..++.-+--+ ++--.-|...+..++-.+|++|..++.++.+-+- ...+
T Consensus 91 l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~-l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 91 LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVS-LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHhCcchhhhhhhhhhhccceeccCCceEEEe-ccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 3466888888888877777665533332111000 2233447777888888999999999988865332 2235
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcC-CCCcccccch-HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHH----
Q 002235 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKL-PQGEQLLVDA-PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINY---- 206 (949)
Q Consensus 133 ~~~I~~~L~d~~pyVRk~A~lal~ki~~l-~~~~~li~~~-~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~---- 206 (949)
.|-.+ +-+.++--|||+|.-++..+-.. ..-..++..- .+.+-.+| ...|+.|++-+..++..|.-++..++
T Consensus 170 ~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 170 EPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred hhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 55444 77889999999988776655430 0333444331 34454544 88999999999999888865442211
Q ss_pred ----HH-HHHhhcCccChhHHHHHHHHHHHhhhcCchhHH----HHHHHHHHHHcCCchHHHHHHHHHHHccCCCh--HH
Q 002235 207 ----LL-THVDRVSEWGELLQMVVLELIRKVCRTNKGEKG----KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP--TA 275 (949)
Q Consensus 207 ----L~-~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~----~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~--~~ 275 (949)
++ .+.+-+...+|-.||..=-.++.++......++ --++.+..+|+++.-..+.+.+-+|-+++-.| +.
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 11 222223466777788777777766554322221 12467778888887777888777774444221 11
Q ss_pred -H--HHHHHHHHHHHccCCchH-HHHHHHHHHHHHHhhCh---hhHH--HHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 276 -I--RAAANTYSQLLLSQSDNN-VKLIVLDRLNELRSSHR---DIMV--DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 276 -l--~~~a~~li~lll~~~d~n-vr~iaL~~L~~l~~~~p---~~l~--~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
+ .....+++++| .-.|++ +++.|...|..++..+. .++. .-+..+..++-|.+.+++.+.=--+..++=.
T Consensus 328 lI~dagfl~pLVrlL-~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLL-RAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred ceecccchhHHHHHH-hcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 1 01345678877 456666 99999999999987432 2221 1233444466788888987755544444444
Q ss_pred CcHHHHH------HHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc
Q 002235 347 RNINEVV------LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (949)
Q Consensus 347 ~Nv~~Iv------~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k 388 (949)
+|-+.-+ +.|. ... .+.+.|++-.+..+++.++..
T Consensus 407 d~~k~~lld~gi~~iLI----p~t---~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 407 DNDKEALLDSGIIPILI----PWT---GSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cccHHHHhhcCCcceee----ccc---CccchhhcccHHHHHHhhhhh
Confidence 4433311 1111 111 145678999999999888754
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.54 E-value=0.0082 Score=56.23 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=72.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCch------hhHH-HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc-
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNET------EIIE-PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV- 169 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~~------el~~-~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~- 169 (949)
+..+.+=|+++++.+|..|+.+|+++... .+++ .++|.+.+++.|+++.||+.|+.++.++.. ..+....
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 86 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA--GPEDNKLI 86 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--CcHHHHHH
Confidence 45566666788899999999999998753 2333 567788889999999999999999999988 5543221
Q ss_pred ----chHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002235 170 ----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 170 ----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~ 199 (949)
...+.+.++| .+.|..++.+|+.+|..+.
T Consensus 87 ~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence 1344455555 6778889999988887654
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.52 E-value=0.53 Score=55.29 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=102.1
Q ss_pred HHHHHhheeccCCCCHHHHHHHHHHHHhhcCC-CcH--HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHc--cC
Q 002235 315 VDLIMDVLRALNSPNLDIRRKTLDIVLELITP-RNI--NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI--KF 389 (949)
Q Consensus 315 ~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~-~Nv--~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~--kf 389 (949)
...+..++..|+++++.+|.+|+++...++-- +|. ...+..|-.-+-.+.+ +..+|.---++.||+.+.. .|
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg---e~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG---EDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC---cccHHHHHHHHHHHHHHhhhhcc
Confidence 44566788899999999999999987754310 000 1112222211222333 4567888888888877653 33
Q ss_pred c---ccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc---HH--HHHHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 390 P---EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL---RV--SIITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 390 ~---~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~---~~--~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
. +-...++..|..+|++....+....|.++..|..+.|+. |+ .|.-.|++.|... ..+++|.+--.+|=.+
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~-nKeiRR~A~~tfG~Is 758 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW-NKEIRRNATETFGCIS 758 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhhHH
Confidence 3 345689999999999998888888899999998888873 22 3555566655542 3468888877777433
Q ss_pred CCCCcHHHHHHHHHHHh
Q 002235 462 QSLSEVENGIATIKQCL 478 (949)
Q Consensus 462 ~~~~~~~~~~~~i~~~l 478 (949)
. .-.|++.+..+...+
T Consensus 759 ~-aiGPqdvL~~LlnnL 774 (975)
T COG5181 759 R-AIGPQDVLDILLNNL 774 (975)
T ss_pred h-hcCHHHHHHHHHhcc
Confidence 3 224566666654433
No 77
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.50 E-value=0.34 Score=60.89 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=95.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHh-----hChhhHHHHHHhheeccCCCCHHHHHHHHHHHH---hhcCCCcH
Q 002235 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRS-----SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVL---ELITPRNI 349 (949)
Q Consensus 278 ~~a~~li~lll~~~d~nvr~iaL~~L~~l~~-----~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~---~l~~~~Nv 349 (949)
..+...+.-|+++++|+||-.-|+.|..|.. +.-+++=.|.. ..|+|.|..+|---.+-+. -.+..+++
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLi---TfLNDkDw~LR~aFfdsI~gvsi~VG~rs~ 653 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLI---TFLNDKDWRLRGAFFDSIVGVSIFVGWRSV 653 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHH---HHhcCccHHHHHHHHhhccceEEEEeeeeH
Confidence 3444445556688889999999999887764 23345555644 4578999999988888877 45678888
Q ss_pred HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc--Cc-ccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh
Q 002235 350 NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK--FP-EVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM 425 (949)
Q Consensus 350 ~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k--f~-~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~ 425 (949)
++.+--|+.+ ... |..+.+...++.++..++.. +- .....+++...-+|...+..++..++.+|..+.++
T Consensus 654 seyllPLl~Q--~lt----D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 654 SEYLLPLLQQ--GLT----DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHH--hcc----CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 8877666643 232 34445666677777776643 11 12245666667788888889999998888888764
No 78
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.43 E-value=1.5 Score=51.74 Aligned_cols=420 Identities=13% Similarity=0.165 Sum_probs=219.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHh-h--------cCCCCcchhHHHHHHHHHHhhcCCCCCCCc
Q 002235 22 IKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRY-V--------LPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (949)
Q Consensus 22 ir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~-l--------~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~ 92 (949)
++..|++++.+-|+..+.-.=..-..|-+.+|.+++=+-- + ++.+....|+.+|- -..+++.-.+.
T Consensus 446 v~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~t-tvilAk~~g~~---- 520 (975)
T COG5181 446 VFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLT-TVILAKMGGDP---- 520 (975)
T ss_pred HHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehh-HHHHHHHcCCh----
Confidence 7888999988777766655545556676665544433211 1 23344444554443 33444433221
Q ss_pred hHHHHHHHHHhhcCCCCHHHH----HHHHHHhhcCCc----hhhHHHHHHHHHHhccCCChHHH---H---HHHHHHHHH
Q 002235 93 EMILICQNLRNNLQHPNEYIR----GVTLRFLCRLNE----TEIIEPLIPSVLQNLQHRHPYIR---R---NAILAVMAI 158 (949)
Q Consensus 93 e~iLv~NsL~KDL~~~N~~iR----~~ALr~L~~I~~----~el~~~l~~~I~~~L~d~~pyVR---k---~A~lal~ki 158 (949)
-++--+..-+.|+.|-+| +++=|.++++.. ..+.+.++..|..++.+.+..|. + +.+.++.
T Consensus 521 ---~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~-- 595 (975)
T COG5181 521 ---RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLE-- 595 (975)
T ss_pred ---HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehh--
Confidence 233444445566655444 344455555543 34445556666666655433221 1 1111111
Q ss_pred hcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc-------hhhHHHHHHHHH-hhcCccChhHHHHHHHHHH
Q 002235 159 YKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD-------QDRAINYLLTHV-DRVSEWGELLQMVVLELIR 230 (949)
Q Consensus 159 ~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~-------~~~ai~~L~~~l-~~i~~~~p~~q~~il~ll~ 230 (949)
++ -.|.+-+-...++ +.| +.+.|.|+.+|+.+...+. ...-+.+|-.++ ..++.-.|=..-.+|+.+.
T Consensus 596 ~r--~kp~l~~ivStiL-~~L-~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 596 FR--GKPHLSMIVSTIL-KLL-RSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred hc--cCcchHHHHHHHH-HHh-cCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 12 2233322223444 334 6666777776665544332 222244544433 2233333333333344333
Q ss_pred Hhh---hcC--chhHHHHHHHHHHHHcCCchHHHHHHHHHHHcc---CCC---hHHHHHHHHHHHHHHccCCchHHHHHH
Q 002235 231 KVC---RTN--KGEKGKYIKIIISLLNAPSTAVIYECAGTLVSL---SSA---PTAIRAAANTYSQLLLSQSDNNVKLIV 299 (949)
Q Consensus 231 ~~~---~~~--p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l---~~~---~~~l~~~a~~li~lll~~~d~nvr~ia 299 (949)
.+. +.+ ..-...++..|.++|+++..-|+-..+..+..+ ++. +...-.++--++.+|.+. ..++|-.|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~-nKeiRR~A 750 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW-NKEIRRNA 750 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-hHHHHHhh
Confidence 221 111 001345667777888887777776666655444 221 222223555567776443 45788888
Q ss_pred HHHHHHHHhh-ChhhHHHHHHhheeccCCCCHHHH---HHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHH
Q 002235 300 LDRLNELRSS-HRDIMVDLIMDVLRALNSPNLDIR---RKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYR 375 (949)
Q Consensus 300 L~~L~~l~~~-~p~~l~~~~~~il~~L~d~d~~Ir---~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r 375 (949)
-..+.-|+.. .|+-+ ..-+++-|...++.-| ..|+.+..+.|-+=|| +..|+.++.+ ....++
T Consensus 751 ~~tfG~Is~aiGPqdv---L~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsV---lP~lm~dY~T-------Pe~nVQ 817 (975)
T COG5181 751 TETFGCISRAIGPQDV---LDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSV---LPTLMSDYET-------PEANVQ 817 (975)
T ss_pred hhhhhhHHhhcCHHHH---HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhh---HHHHHhcccC-------chhHHH
Confidence 8887777653 45322 1123333444444444 4678888888887664 5556655432 345678
Q ss_pred HHHHHHHHHhHccCcccHHHHHHHHHHHHh----CCCcccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHh-ccc--chH
Q 002235 376 QMLIQAIHSCAIKFPEVASTVVHLLMDFLG----DSNVASAIDVIIFVREIIEMNPKL-RVSIITRLLDNF-YQI--RAA 447 (949)
Q Consensus 376 ~~lv~aI~~la~kf~~~~~~~l~~L~~lL~----~~~~~v~~e~i~~l~~ii~~~p~~-~~~~l~~L~~~l-~~i--~~~ 447 (949)
.-+.++++-.-+...+.+..|+-++..+|. |....-.+.+..+|+.+.-+.|.. .+.+.-||++.| ..| ..|
T Consensus 818 nGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sP 897 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSP 897 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCc
Confidence 888888876665555555566666665555 444444555678888887666654 355666777765 232 234
Q ss_pred HHHHHHhhhcccCCCCCCcHHHHHHHHHHHhCCCCC
Q 002235 448 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPF 483 (949)
Q Consensus 448 ~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~~p~ 483 (949)
.+..+ ..+.++.+++.+|.-|+
T Consensus 898 hvi~~--------------~~Eg~e~~~~~lg~g~~ 919 (975)
T COG5181 898 HVIQS--------------FDEGMESFATVLGSGAM 919 (975)
T ss_pred HHHHH--------------HHHHHHHHHHHhccHHH
Confidence 44442 34566777777765443
No 79
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.37 E-value=0.13 Score=64.44 Aligned_cols=234 Identities=12% Similarity=0.150 Sum_probs=152.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhCCCCCC---------chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCc
Q 002235 22 IKEALEGNDVPAKVDAMKKAIMLLLNGETLP---------QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (949)
Q Consensus 22 ir~~L~s~~~~~k~~aL~kli~l~~~G~d~s---------~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~ 92 (949)
+-..++++....++.||..|..++.+=.+++ .+|+++-. +...++...=|++|- +.++.+... . -
T Consensus 467 ~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~-l~~d~~~~~vRiayA--snla~LA~t-A--~ 540 (1431)
T KOG1240|consen 467 FVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH-LLNDSSAQIVRIAYA--SNLAQLAKT-A--Y 540 (1431)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh-hhccCccceehhhHH--hhHHHHHHH-H--H
Confidence 3456778888899999999999988877764 46666666 434446666677653 333322200 0 0
Q ss_pred hHH-----HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-c
Q 002235 93 EMI-----LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-Q 166 (949)
Q Consensus 93 e~i-----Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~ 166 (949)
-.+ +-+|.+.+|.++. -+......-....+.+.+...+..++.|+.|+|||+-+-++..++. ++- .
T Consensus 541 rFle~~q~~~~~g~~n~~nse------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~--FFGk~ 612 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSE------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCV--FFGKE 612 (1431)
T ss_pred HHHHHHHHHHhcccccCcccc------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH--Hhhhc
Confidence 012 3334444555542 1111112223356677788888999999999999999988888777 332 2
Q ss_pred cccch-HHHHHHHHccCCChhHHHHHHHHHHhcc----hhhHHHHHHHHHhh-cCccChhHHHHHHHHHHHhhhcC---c
Q 002235 167 LLVDA-PEMIEKVLSTEQDPSAKRNAFLMLFTCD----QDRAINYLLTHVDR-VSEWGELLQMVVLELIRKVCRTN---K 237 (949)
Q Consensus 167 li~~~-~e~l~~~L~~d~d~~v~~~Al~~L~~i~----~~~ai~~L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~---p 237 (949)
--.|. ...+-++| +|+|+..+.+-|-.+.-++ +...-+||.-++.+ +.+..|+..+.+|+.+.-++... .
T Consensus 613 ksND~iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 613 KSNDVILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred ccccchHHHHHHHh-cCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 22333 35666787 8999988866665554332 32234566666654 56788999999999998887653 2
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC
Q 002235 238 GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS 270 (949)
Q Consensus 238 ~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~ 270 (949)
....++++.+.++|-+.|.=|+++++..|....
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 334567788888999999888888888776653
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.35 E-value=0.048 Score=58.02 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=85.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHccCC----C-hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhCh---hhHHH
Q 002235 245 KIIISLLNAPSTAVIYECAGTLVSLSS----A-PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR---DIMVD 316 (949)
Q Consensus 245 ~~L~~lL~s~s~aV~~Eaa~~l~~l~~----~-~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p---~~l~~ 316 (949)
..+...+.+.++.|.-+|+.++..+.. . ...+.....++++.+ .++...++-.|-..|..|....+ .++.+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~ 134 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCSYSPKILLE 134 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H--HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 455556666677788888888766632 1 223455666666666 45567889999999999988654 23223
Q ss_pred HHHhheeccCCCCHHHHHHHHHHHHhhcCCCc-----H--HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC
Q 002235 317 LIMDVLRALNSPNLDIRRKTLDIVLELITPRN-----I--NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF 389 (949)
Q Consensus 317 ~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~N-----v--~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf 389 (949)
.+....++.++.+|..+++.+..+.+.-+ + ...++.+.+-+.+... |.+++.|..+-+++..+...|
T Consensus 135 ---~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 135 ---ILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHF 208 (228)
T ss_dssp ---HHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHC
Confidence 24446789999999999998888766555 1 1122334444445554 678888888888888887778
Q ss_pred cccHHHHHHHH
Q 002235 390 PEVASTVVHLL 400 (949)
Q Consensus 390 ~~~~~~~l~~L 400 (949)
|..+...++.|
T Consensus 209 ~~~a~~~~~~l 219 (228)
T PF12348_consen 209 PERAESILSML 219 (228)
T ss_dssp -HHH-------
T ss_pred CHhhccchhcc
Confidence 87776665443
No 81
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.34 E-value=0.075 Score=57.66 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=115.8
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHhhCh---hhHHH--HHHhheeccCCCCHHHHHHHHHHHHhhcCC-CcHHHHHH
Q 002235 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHR---DIMVD--LIMDVLRALNSPNLDIRRKTLDIVLELITP-RNINEVVL 354 (949)
Q Consensus 281 ~~li~lll~~~d~nvr~iaL~~L~~l~~~~p---~~l~~--~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~ 354 (949)
..++.+|-.+.||.++-.++-.+...+. +| +++.+ -..-+...++++++.+|.+|+..+-.+... +|...| +
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I-k 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI-K 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH-H
Confidence 4456666667788888888888877653 22 12221 233467788999999999999999987644 344432 2
Q ss_pred HHHHHHHH-hccCCccCCHHHHHHHHHHHHHhHccC--cccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccH-
Q 002235 355 MLKKEVVK-TQSGELEKNGEYRQMLIQAIHSCAIKF--PEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR- 430 (949)
Q Consensus 355 ~L~kel~~-~~~~~~d~~~e~r~~lv~aI~~la~kf--~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~- 430 (949)
....++-. ..+. .-+.+.+....+.++.++... ......++.-++.+|..++......++..+..+.. +|...
T Consensus 93 ~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~ 169 (254)
T PF04826_consen 93 MYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTR 169 (254)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHH
Confidence 22222222 1111 346788899999999988653 33445678888999998887777778877777653 45542
Q ss_pred ----HHHHHHHHHHhcccchHHHHHHHhhhcc
Q 002235 431 ----VSIITRLLDNFYQIRAARVCTCALWIIG 458 (949)
Q Consensus 431 ----~~~l~~L~~~l~~i~~~~v~~~~lwiLG 458 (949)
.+++..++..++.....++...++|+.+
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 2456788888887777788888888775
No 82
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.29 E-value=0.43 Score=56.93 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=133.1
Q ss_pred ChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHccCCchHHH
Q 002235 218 GELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVK 296 (949)
Q Consensus 218 ~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~~a~~li~lll~~~d~nvr 296 (949)
++=.....-++|.+|....|+..+.-++.+..+....+..|+.+|++.|..+-. +++.+..++..|.++|. +.|+.-.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~-tdd~~E~ 113 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ-TDDPVEL 113 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT----HHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh-cccHHHH
Confidence 444566677889999999999999999999999999999999999999988864 46678889999999885 4456666
Q ss_pred HHHHHHHHHHHhhChh-hHHHHHHhheeccCCCCHHHHHHHHHHHHh-h-------cC--CCcHHHHHHHHHHHHHHhcc
Q 002235 297 LIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLE-L-------IT--PRNINEVVLMLKKEVVKTQS 365 (949)
Q Consensus 297 ~iaL~~L~~l~~~~p~-~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~-l-------~~--~~Nv~~Iv~~L~kel~~~~~ 365 (949)
-++=..|..+...+|. .+......|+.. ...|..+|.++|..|.. + .+ ++.-+-|+.+++| .+.
T Consensus 114 ~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikk----vL~ 188 (556)
T PF05918_consen 114 DAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKK----VLQ 188 (556)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHH----HCT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHH----HHH
Confidence 6666777777777775 344444444321 24577899999987742 1 12 2222233333332 222
Q ss_pred CCcc-CCHHHHHHHHHHHHHhHc---c-CcccHHHHHHHHHHHHhCCCc--ccHHHHHHHHHHHHHh-----Cccc-HHH
Q 002235 366 GELE-KNGEYRQMLIQAIHSCAI---K-FPEVASTVVHLLMDFLGDSNV--ASAIDVIIFVREIIEM-----NPKL-RVS 432 (949)
Q Consensus 366 ~~~d-~~~e~r~~lv~aI~~la~---k-f~~~~~~~l~~L~~lL~~~~~--~v~~e~i~~l~~ii~~-----~p~~-~~~ 432 (949)
| ...||... +.-++.+-. + -+.....+++++.+....... ..-.+.|..+...+++ .+.. ...
T Consensus 189 ---DVTaeEF~l~-m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Ssk 264 (556)
T PF05918_consen 189 ---DVTAEEFELF-MSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSK 264 (556)
T ss_dssp ---T--HHHHHHH-HHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HH
T ss_pred ---hccHHHHHHH-HHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHH
Confidence 1 12344432 244443332 1 122234566666654432221 1112334333222221 1111 123
Q ss_pred HHHHHHHH----hcccchHHHHHHHhhhcccCCCCCC--cHHHHHHHHHHHhCC
Q 002235 433 IITRLLDN----FYQIRAARVCTCALWIIGEYCQSLS--EVENGIATIKQCLGE 480 (949)
Q Consensus 433 ~l~~L~~~----l~~i~~~~v~~~~lwiLGEy~~~~~--~~~~~~~~i~~~l~~ 480 (949)
.+..+|+. +.++ ....+-..+-++.|.++... ++...+..|++.|..
T Consensus 265 fv~y~~~kvlP~l~~l-~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 265 FVNYMCEKVLPKLSDL-PEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHTCCCTT------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCChhhC-ChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 44444443 3444 22345556666666655543 467778888777754
No 83
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=2.8 Score=52.69 Aligned_cols=331 Identities=15% Similarity=0.133 Sum_probs=179.4
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-ccccchH-HHHHHHHccCCChhHHHHHHHHHHhcch--
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAP-EMIEKVLSTEQDPSAKRNAFLMLFTCDQ-- 200 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~li~~~~-e~l~~~L~~d~d~~v~~~Al~~L~~i~~-- 200 (949)
.|+++|-++..+.+++.|.+..||..|+-.++|+.. ..| ++..+.. .+++ ++.--.+++.-..|+.+|-++..
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~--rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS--RLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc--cCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcC
Confidence 368899999999999999999999999999999999 555 4444333 3343 33211235666677777777642
Q ss_pred ----hh---HHHHHHHHHh--h-cC--ccChh---HHHHHHHHHHHhhhcCchhHHHHHHHHHH-----HHcCCchHHHH
Q 002235 201 ----DR---AINYLLTHVD--R-VS--EWGEL---LQMVVLELIRKVCRTNKGEKGKYIKIIIS-----LLNAPSTAVIY 260 (949)
Q Consensus 201 ----~~---ai~~L~~~l~--~-i~--~~~p~---~q~~il~ll~~~~~~~p~~~~~li~~L~~-----lL~s~s~aV~~ 260 (949)
+. -++.+.+-+. . .+ ..+.. +-|.++-.+.+- .+|+..+.++..|.. .+-.+.-.+++
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra--ys~~~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA--YSPSDLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc--CChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 22 1222222221 0 00 11111 234444444332 134444444443332 22344556777
Q ss_pred HHHHHHHcc----CCChH-----------HH-----------------HHHHHHHHHHHcc----CCchHHHHHHHHHHH
Q 002235 261 ECAGTLVSL----SSAPT-----------AI-----------------RAAANTYSQLLLS----QSDNNVKLIVLDRLN 304 (949)
Q Consensus 261 Eaa~~l~~l----~~~~~-----------~l-----------------~~~a~~li~lll~----~~d~nvr~iaL~~L~ 304 (949)
.|+-++... .+.|. ++ ..-..++++-++. +=|..+|..+-..|.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 777766543 11110 00 0012234444433 347889999999999
Q ss_pred HHHhhChhhHH-HHHHhheeccCCCCHHHHHHHH----HHHHh---hc--CCCcHHHHHHHHHHHHHHhccCCc--cCCH
Q 002235 305 ELRSSHRDIMV-DLIMDVLRALNSPNLDIRRKTL----DIVLE---LI--TPRNINEVVLMLKKEVVKTQSGEL--EKNG 372 (949)
Q Consensus 305 ~l~~~~p~~l~-~~~~~il~~L~d~d~~Ir~~aL----~lL~~---l~--~~~Nv~~Iv~~L~kel~~~~~~~~--d~~~ 372 (949)
+|....|+.+. .+.+.++.+....|...|--.. ++++. +. ...-.+..|..+...+..+.+... -...
T Consensus 570 ~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~ 649 (1133)
T KOG1943|consen 570 KLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT 649 (1133)
T ss_pred HHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence 99999998887 3556677776667766653222 22221 11 122222233322111111110000 0113
Q ss_pred HHHHHHHHHHHHhHccCcc-----cHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh----CcccHHHHHHHHHHHhcc
Q 002235 373 EYRQMLIQAIHSCAIKFPE-----VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM----NPKLRVSIITRLLDNFYQ 443 (949)
Q Consensus 373 e~r~~lv~aI~~la~kf~~-----~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~----~p~~~~~~l~~L~~~l~~ 443 (949)
-+|+...+.|..+...-+. ..+..-..+.+.++..+ .+.+.++..+.+++.. ++..-..++.+.+..+.+
T Consensus 650 lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~ 728 (1133)
T KOG1943|consen 650 LMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTK 728 (1133)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcC
Confidence 4555556666555543222 12223334555554444 5667778888888763 232223467888888888
Q ss_pred cchHHHHHHHhhhcccCC
Q 002235 444 IRAARVCTCALWIIGEYC 461 (949)
Q Consensus 444 i~~~~v~~~~lwiLGEy~ 461 (949)
+.+..+++...-++|--.
T Consensus 729 ~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 729 CSEERIRRGLILALGVLP 746 (1133)
T ss_pred chHHHHHHHHHHHHccCc
Confidence 888889998888888654
No 84
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=1.9 Score=56.20 Aligned_cols=381 Identities=13% Similarity=0.124 Sum_probs=207.1
Q ss_pred hhHHHHH-hhcCCCCcchhHHHHHHHHHH-hhcCCCCCCCch-----HHHHHHHHH--hhcCCCCHHHHHHHHHHhhcCC
Q 002235 54 LFITIVR-YVLPSEDHTIQKLLLLYLEII-DKTDAKGRVLPE-----MILICQNLR--NNLQHPNEYIRGVTLRFLCRLN 124 (949)
Q Consensus 54 lf~~Vik-~l~~s~d~~lKrL~YL~l~~~-~~~~~d~~l~~e-----~iLv~NsL~--KDL~~~N~~iR~~ALr~L~~I~ 124 (949)
++-++++ +++.++|..+|-++-..+..+ --+.|+-+..++ ..+++..+. .|..+|-.--|..=|..|++++
T Consensus 49 l~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k 128 (1266)
T KOG1525|consen 49 LADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK 128 (1266)
T ss_pred HHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH
Confidence 3444443 457888888888776554432 123333222121 234455443 6777776655666666766654
Q ss_pred ---------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-CCCCccccc-chHH-HHHHHHc--cCCChhHHHH
Q 002235 125 ---------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK-LPQGEQLLV-DAPE-MIEKVLS--TEQDPSAKRN 190 (949)
Q Consensus 125 ---------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~-l~~~~~li~-~~~e-~l~~~L~--~d~d~~v~~~ 190 (949)
..+++..+...+...+.+.||--==+ +..|.. +..-.+-++ .+.+ ++.+++. .+..+....-
T Consensus 129 ~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~----~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~l 204 (1266)
T KOG1525|consen 129 FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN----MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKL 204 (1266)
T ss_pred HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHH
Confidence 33445555555555554444421111 221111 000001111 1111 1222221 1111112222
Q ss_pred HHHHHHhcchhh---HHHHHHHHHhhcC-ccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 002235 191 AFLMLFTCDQDR---AINYLLTHVDRVS-EWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTL 266 (949)
Q Consensus 191 Al~~L~~i~~~~---ai~~L~~~l~~i~-~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l 266 (949)
|=.++.++.+.. --+++.+.+..-. ...+ .+...-+++.++-+..|......++.|...|.+.+..++.+|..++
T Consensus 205 a~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~-~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 205 ASDLIERCADNLEDTIANFLNSCLTEYKSRQSS-LKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLV 283 (1266)
T ss_pred HHHHHHHhhhhhchhHHHHHHHHHhhccccccc-hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 222333333221 0123333322111 1112 2667777777777777888888899999999999999999999999
Q ss_pred HccCCChHHH-----HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHH
Q 002235 267 VSLSSAPTAI-----RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVL 341 (949)
Q Consensus 267 ~~l~~~~~~l-----~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~ 341 (949)
..+-..+... ...-..+++.| .+.+.++|...++........+|........-..-+..|.|..+|.+..-++.
T Consensus 284 g~~~~~~~~~l~~~~~~~~~~fl~r~-~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~ 362 (1266)
T KOG1525|consen 284 GRMFSDKDSQLSETYDDLWSAFLGRF-NDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIV 362 (1266)
T ss_pred HHHHhcchhhhcccchHHHHHHHHHh-ccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEE
Confidence 8875432211 12335567776 46778999999999999988899876554333322345667777766554444
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc-C----------cccHHHHHHHHHHHHhCCCcc
Q 002235 342 ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-F----------PEVASTVVHLLMDFLGDSNVA 410 (949)
Q Consensus 342 ~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k-f----------~~~~~~~l~~L~~lL~~~~~~ 410 (949)
...-..-.-.++..|++.+..-+. |+-..+|..++..+..+-.+ | .+..+|+-+-|+.++...+-.
T Consensus 363 ~~~v~~~~l~~~~~ll~~~~eR~r---DKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~ 439 (1266)
T KOG1525|consen 363 ACDVMKFKLVYIPLLLKLVAERLR---DKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLD 439 (1266)
T ss_pred EeehhHhhhhhhHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhcccc
Confidence 332222222222224555444444 77889999999998776553 1 234579999999998877644
Q ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcc
Q 002235 411 SAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQ 443 (949)
Q Consensus 411 v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~ 443 (949)
...-+-..+.+.+.-+|-.-+.-+.+|...|-.
T Consensus 440 ~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 440 DRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 442233455555554444445567777776643
No 85
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.92 Score=48.60 Aligned_cols=269 Identities=16% Similarity=0.183 Sum_probs=157.3
Q ss_pred HHHHHHhhcCCCCH--HHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHH
Q 002235 97 ICQNLRNNLQHPNE--YIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEM 174 (949)
Q Consensus 97 v~NsL~KDL~~~N~--~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~ 174 (949)
.+++|.+-|.++.. --|-.||=.|-++..+.. +..|-++..|.+...+-.++.|++..-. .+-++ -+
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~----i~~i~ka~~d~s~llkhe~ay~LgQ~~~----~~Av~---~l 72 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAA----IKAITKAFIDDSALLKHELAYVLGQMQD----EDAVP---VL 72 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHH----HHHHHHhcccchhhhccchhhhhhhhcc----chhhH---HH
Confidence 34666666655322 345556666666665555 5667778877788888888888887744 32232 23
Q ss_pred HHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhh-cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcC
Q 002235 175 IEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNA 253 (949)
Q Consensus 175 l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s 253 (949)
+..++..++.|+|+..|-.+|..+.......++.+..++ +..-.|-.+..+-++=.+-.. ....+
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~-------------~~~~~- 138 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIGDPESLEILTKYIKDPCKEVRETCELAIKRLEWKDII-------------DKIAN- 138 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhcchhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc-------------ccccc-
Confidence 333333567789988888888888744455666555522 111222223333222111100 00000
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHH-HHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHH
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNV-KLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDI 332 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nv-r~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~I 332 (949)
++ .+.+..|.|.+-..-+..+-..++..+.++. ||.++=.|..+.. ..-+..|..-+.++..-+
T Consensus 139 ~~---------p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~------EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 139 SS---------PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT------EEAINALIDGLADDSALF 203 (289)
T ss_pred cC---------ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc------HHHHHHHHHhcccchHHH
Confidence 00 0111112221100111122223344444444 7766666644421 122334556778888899
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccH
Q 002235 333 RRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASA 412 (949)
Q Consensus 333 r~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~ 412 (949)
|..+--++..|-++..|..+.+.|..+ ...+-+|.++..|+|.++. +.++++|.+++.|..+-+.
T Consensus 204 rhEvAfVfGQl~s~~ai~~L~k~L~d~---------~E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~ 268 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSPAAIPSLIKVLLDE---------TEHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVR 268 (289)
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHhh---------hcchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHH
Confidence 999999999999999999988766642 2356799999999998884 4899999999999877666
Q ss_pred HHHHHHHH
Q 002235 413 IDVIIFVR 420 (949)
Q Consensus 413 ~e~i~~l~ 420 (949)
..+..++-
T Consensus 269 esc~vald 276 (289)
T KOG0567|consen 269 ESCEVALD 276 (289)
T ss_pred HHHHHHHH
Confidence 66655543
No 86
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.00 E-value=3.6 Score=51.16 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=186.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC----CchhHHHHHhhcCCCCcchhHHHHHHHHH----HhhcCCCCCCCchHHHHHHHH
Q 002235 30 DVPAKVDAMKKAIMLLLNGETL----PQLFITIVRYVLPSEDHTIQKLLLLYLEI----IDKTDAKGRVLPEMILICQNL 101 (949)
Q Consensus 30 ~~~~k~~aL~kli~l~~~G~d~----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~----~~~~~~d~~l~~e~iLv~NsL 101 (949)
.+..+-.++..+..+.-.+.+. ..++...++ .....+ -|.-|+.... +....+++. +++. +...
T Consensus 289 qdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~-~~~d~~---~~v~~~~~~~~~~L~~~~~~~~~-~~~~---~~~~ 360 (759)
T KOG0211|consen 289 QDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ-AVEDGS---WRVSYMVADKFSELSSAVGPSAT-RTQL---VPPV 360 (759)
T ss_pred hhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH-HhcChh---HHHHHHHhhhhhhHHHHhccccC-cccc---hhhH
Confidence 3556667777777776666544 234444443 323333 3344444433 333333211 1233 2333
Q ss_pred HhhcCCCCHHHHHHHHHH---hhcCCc----hhhH-HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHH
Q 002235 102 RNNLQHPNEYIRGVTLRF---LCRLNE----TEII-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (949)
Q Consensus 102 ~KDL~~~N~~iR~~ALr~---L~~I~~----~el~-~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e 173 (949)
..-+.+.-.-.|..+-+- ++.... +++. +.++|.++.+..|.++.||.+.+.-+.-+..+...+..++...+
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLP 440 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccCh
Confidence 333444444445444332 233333 3333 34569999999999999999988766655442012334444434
Q ss_pred HHHHHHccCCChhHHHHHHH---HHHhcchhhHHHH----HHHHHhhcCccChh-HHHHHHHHHHHhhhcCc--hhHHHH
Q 002235 174 MIEKVLSTEQDPSAKRNAFL---MLFTCDQDRAINY----LLTHVDRVSEWGEL-LQMVVLELIRKVCRTNK--GEKGKY 243 (949)
Q Consensus 174 ~l~~~L~~d~d~~v~~~Al~---~L~~i~~~~ai~~----L~~~l~~i~~~~p~-~q~~il~ll~~~~~~~p--~~~~~l 243 (949)
+.-.. ++|.++.|+.+-.. .+.++...-.+.. +...+..+.....| ....+++++-..+...- -...++
T Consensus 441 ~~~~~-l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~ 519 (759)
T KOG0211|consen 441 LLIGN-LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKL 519 (759)
T ss_pred hhhhh-cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHH
Confidence 44333 38889999988883 3333332222221 11122222222234 35666777766655422 123446
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHccC---CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh--hHHHHH
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSLS---SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD--IMVDLI 318 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l~---~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~--~l~~~~ 318 (949)
-+.+..++.+.-.+++-.|++.+..+. ...-........++.... ++..-.|...+..+..++..... .-+...
T Consensus 520 ~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~-q~~y~~R~t~l~si~~la~v~g~ei~~~~Ll 598 (759)
T KOG0211|consen 520 AELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL-QDNYLVRMTTLFSIHELAEVLGQEITCEDLL 598 (759)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc-CcccchhhHHHHHHHHHHHHhccHHHHHHHh
Confidence 677788888888888888888776552 111122233344444432 22245788999999988875332 334455
Q ss_pred HhheeccCCCCHHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHH--hHccCc
Q 002235 319 MDVLRALNSPNLDIRRKTLDIVLELI---TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHS--CAIKFP 390 (949)
Q Consensus 319 ~~il~~L~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~--la~kf~ 390 (949)
..+..+..|+...||-.++..|.+++ ...-.+..|..+...+.+ |.+.++|..++.+.+. ++.++.
T Consensus 599 p~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 599 PVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred HHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHHHHHhh
Confidence 66777788999999998887777654 555555555544433333 3344455555555544 444444
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.93 E-value=0.021 Score=46.39 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCC------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 002235 110 EYIRGVTLRFLCRLN------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAI 158 (949)
Q Consensus 110 ~~iR~~ALr~L~~I~------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki 158 (949)
|.+|..|+.+|+++. .....+.+++.+..+|.|.++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999875 2335567888888899999999999999999865
No 88
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.87 E-value=0.011 Score=42.21 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
++|.+.+++.|++|.||.+|+.|+..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999876
No 89
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=6.1 Score=50.37 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=97.7
Q ss_pred HHhCCCCCCchhHHHHHhhcCCC-----CcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHH
Q 002235 44 LLLNGETLPQLFITIVRYVLPSE-----DHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 118 (949)
Q Consensus 44 l~~~G~d~s~lf~~Vik~l~~s~-----d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr 118 (949)
++..-+....++-.|++.+ .+. |....|-+=.++..++..-|.- ++=-.+.+.+-|.+.+...|..-+.
T Consensus 261 l~~sky~~~sl~~~Iir~I-~~~~~~~~d~~g~k~v~~fL~elS~~~P~l-----~~~~l~~lv~lld~es~~lRnavle 334 (1251)
T KOG0414|consen 261 LVRSKYGSVSLAGNIIRSI-GSPEPNEKDCAGPKIVGNFLVELSERVPKL-----MLRQLTLLVDLLDSESYTLRNAVLE 334 (1251)
T ss_pred HHHHhcccHHHHHHHHHHh-cccchhcccccchhhHHHHHHHHHHHhHHH-----HHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3333444567788888865 443 4455677777777776554310 1112234444567778899999999
Q ss_pred HhhcCCchhh------------HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHH--ccCCC
Q 002235 119 FLCRLNETEI------------IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVL--STEQD 184 (949)
Q Consensus 119 ~L~~I~~~el------------~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L--~~d~d 184 (949)
.++++...++ -..++..+.+.+-|-+||||.+++--..+|++ ...--+..|.++++-.. +.|++
T Consensus 335 i~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~--~~s~p~~~~~eV~~la~grl~DkS 412 (1251)
T KOG0414|consen 335 ICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQ--QHSIPLGSRTEVLELAIGRLEDKS 412 (1251)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH--ccCCCccHHHHHHHHHhccccccc
Confidence 9888753222 22366777888899999999999999999998 33333344556554322 26889
Q ss_pred hhHHHHHHHHHHhc
Q 002235 185 PSAKRNAFLMLFTC 198 (949)
Q Consensus 185 ~~v~~~Al~~L~~i 198 (949)
..|+++|+.++..+
T Consensus 413 slVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 413 SLVRKNAIQLLSSL 426 (1251)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987764
No 90
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.81 E-value=2.8 Score=46.30 Aligned_cols=276 Identities=16% Similarity=0.267 Sum_probs=166.9
Q ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhcCCCCc---ccccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchhh---
Q 002235 132 LIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGE---QLLVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--- 202 (949)
Q Consensus 132 l~~~I~~~L-~d~~pyVRk~A~lal~ki~~l~~~~---~li~~--~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--- 202 (949)
++|-+.+.+ ++.+....=.|+-++..|.. -.. .++-+ +.++.-++| .+++..|+-.|+-+|..|.-+.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaS--Gtt~QTkvVvd~~AVPlfiqlL-~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIAS--GTTQQTKVVVDAGAVPLFIQLL-SSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhcc--CcccceEEEEeCCchHHHHHHH-cCchHHHHHHHHHHhccccCCchhH
Confidence 445555666 66677777789999998876 222 22222 345555655 7777889999999999986542
Q ss_pred --------HHHHHHHHHhhcCccChhHHHHHHH----HHHHhhhc-C----chhHHHHHHHHHHHHcCCchHHHHHHHHH
Q 002235 203 --------AINYLLTHVDRVSEWGELLQMVVLE----LIRKVCRT-N----KGEKGKYIKIIISLLNAPSTAVIYECAGT 265 (949)
Q Consensus 203 --------ai~~L~~~l~~i~~~~p~~q~~il~----ll~~~~~~-~----p~~~~~li~~L~~lL~s~s~aV~~Eaa~~ 265 (949)
+++.+..++.. ..+ .+.++| .|..+||. + .+...+-++.|..++.+..+-|+..|+.+
T Consensus 192 RD~vL~~galeplL~ll~s---s~~--~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLS---SAI--HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred HHHHHhcCchHHHHHHHHh---ccc--hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 23444444431 111 233343 35567775 2 23567788999999999999999999999
Q ss_pred HHccCCChH-HHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhC---hhhHHH--HHHhheeccCCCCHHHHH
Q 002235 266 LVSLSSAPT-AIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSH---RDIMVD--LIMDVLRALNSPNLDIRR 334 (949)
Q Consensus 266 l~~l~~~~~-~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~---p~~l~~--~~~~il~~L~d~d~~Ir~ 334 (949)
|..++..|. .+.+ ....++.+| ++++.++.--+|+.+..|..-. ..++.+ ....|..+|+++-..||+
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 999986543 2322 224577776 6788889999999998876421 122221 234455568888889999
Q ss_pred HHHHHHHhhcCCCcHHHH--------HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhH---ccCccc-----HHHHHH
Q 002235 335 KTLDIVLELITPRNINEV--------VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA---IKFPEV-----ASTVVH 398 (949)
Q Consensus 335 ~aL~lL~~l~~~~Nv~~I--------v~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la---~kf~~~-----~~~~l~ 398 (949)
.|-=++..+ +..|.+.+ +.-|.+-+. + .+-..|+++-=||.... ..-|.. ...+++
T Consensus 346 EaCWTiSNI-TAGnteqiqavid~nliPpLi~lls-~------ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik 417 (526)
T COG5064 346 EACWTISNI-TAGNTEQIQAVIDANLIPPLIHLLS-S------AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417 (526)
T ss_pred hhheeeccc-ccCCHHHHHHHHhcccchHHHHHHH-H------HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence 988777764 34454442 122221111 1 12344555555554332 234432 123455
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHHH
Q 002235 399 LLMDFLGDSNVASAIDVIIFVREIIE 424 (949)
Q Consensus 399 ~L~~lL~~~~~~v~~e~i~~l~~ii~ 424 (949)
-|-++|.-....+.+-.+..+.++++
T Consensus 418 pLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 418 PLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHhccCccchhhhHHHHHHHHh
Confidence 56666655544455545666666654
No 91
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.91 Score=57.41 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=159.2
Q ss_pred HHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHH-hhcCCCCHHHHHHHHHH
Q 002235 42 IMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLR-NNLQHPNEYIRGVTLRF 119 (949)
Q Consensus 42 i~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv~NsL~-KDL~~~N~~iR~~ALr~ 119 (949)
.|++..+.|+...+++-+..+....| ....-..++..+....+=++..+|- +=..+++. .+.++.+.-++--|-|.
T Consensus 600 ~~~~~t~~dv~~~l~~s~~e~as~~~--~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrl 677 (1176)
T KOG1248|consen 600 DYFTVTPTDVVGSLKDSAGELASDLD--ESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRL 677 (1176)
T ss_pred HHhhcccHHHHHHHHHHHHhHhccch--hhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHH
Confidence 46677788888888887775543333 2222222323322222111111221 22223454 44566688888888777
Q ss_pred hhcCCc--------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc----ccccch-HHHHHHHHccCCChh
Q 002235 120 LCRLNE--------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE----QLLVDA-PEMIEKVLSTEQDPS 186 (949)
Q Consensus 120 L~~I~~--------~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~----~li~~~-~e~l~~~L~~d~d~~ 186 (949)
|..+.. ..-++.++..+.+.+.+...++|+.++-|+.+||+ ..+ ++++.. +|+|-. .++-|..
T Consensus 678 L~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~--~~~~e~~~~i~k~I~EvIL~--~Ke~n~~ 753 (1176)
T KOG1248|consen 678 LEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK--LLSAEHCDLIPKLIPEVILS--LKEVNVK 753 (1176)
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHh--cccccHH
Confidence 766543 34556677777777788899999999999999999 555 444432 344422 3777788
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHH----HHHH
Q 002235 187 AKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAV----IYEC 262 (949)
Q Consensus 187 v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV----~~Ea 262 (949)
.+++||.+|+.+.. +...+... .+| +-. ....|+..|..-+-..+..+ +...
T Consensus 754 aR~~Af~lL~~i~~------i~~~~d~g--~e~--~~~--------------~lnefl~~Isagl~gd~~~~~as~Ivai 809 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGA------IQSSLDDG--NEP--ASA--------------ILNEFLSIISAGLVGDSTRVVASDIVAI 809 (1176)
T ss_pred HHhhHHHHHHHHHH------HHhhhccc--ccc--hHH--------------HHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 89999999988765 11111111 122 111 11223333333333222211 2222
Q ss_pred HHHHHccCC--ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh-HHHHHH----hheeccCCCCHHHHHH
Q 002235 263 AGTLVSLSS--APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI-MVDLIM----DVLRALNSPNLDIRRK 335 (949)
Q Consensus 263 a~~l~~l~~--~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~-l~~~~~----~il~~L~d~d~~Ir~~ 335 (949)
..++..... +...+..... .+..++.++.+.++-.|+.-+..+....|.. +++|+. .++..+.+-..++|.+
T Consensus 810 ~~il~e~~~~ld~~~l~~li~-~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 810 THILQEFKNILDDETLEKLIS-MVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHHHHhccccHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 222333222 1223333333 3455667888999999999999999998874 456653 3555556668888888
Q ss_pred HHHHHHhhcCCCcHH
Q 002235 336 TLDIVLELITPRNIN 350 (949)
Q Consensus 336 aL~lL~~l~~~~Nv~ 350 (949)
.-.++-+|+..-.++
T Consensus 889 vr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 889 VRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHHHHhCHH
Confidence 877777666554444
No 92
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.62 E-value=0.025 Score=51.95 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHH---HHHHHHccCCChhHHHHHH
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE---MIEKVLSTEQDPSAKRNAF 192 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e---~l~~~L~~d~d~~v~~~Al 192 (949)
..+.++.+++.|.+++.|.++-||-.|+.|++.+.+. ..++.++.+.+ .+-+ +..|+|+.|+..|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~~IF~~L~k-l~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFNEIFDALCK-LSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHcCCchhHHHHHH
Confidence 5677888999999999999999999999999999983 33344444433 3444 34899999998773
No 93
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.18 Score=64.68 Aligned_cols=129 Identities=15% Similarity=0.229 Sum_probs=102.9
Q ss_pred hhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcc
Q 002235 312 DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (949)
Q Consensus 312 ~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~ 391 (949)
..|..|...|+..+..+-+.+|.+||..|..++....+-..-......+.+-.. |....+|..+++-+|+...-+|+
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~---DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN---DSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc---cchhHHHHHHHHHHhhhhhccHH
Confidence 456788999999999999999999999999998876554433333323322222 56788999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc--HHHHHHHHHHHhcc
Q 002235 392 VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL--RVSIITRLLDNFYQ 443 (949)
Q Consensus 392 ~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~l~~L~~~l~~ 443 (949)
....|.+.+.+-+.|.|-.+++.+|..+|+|...+|++ +..++.+++.-+.|
T Consensus 889 ~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 889 LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999986 34455566655554
No 94
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.45 E-value=2.3 Score=49.73 Aligned_cols=228 Identities=18% Similarity=0.271 Sum_probs=123.3
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-cCCCCHHHHHHHHHHhhcCCch----hhHHHHHHHHHHhc-cC
Q 002235 69 TIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNN-LQHPNEYIRGVTLRFLCRLNET----EIIEPLIPSVLQNL-QH 142 (949)
Q Consensus 69 ~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KD-L~~~N~~iR~~ALr~L~~I~~~----el~~~l~~~I~~~L-~d 142 (949)
..++++.++...+...+++-.+ +++--..+.+.+. +.+.++..|..+++.+|.+.+. +.++.+...+...+ ..
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~-~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~ 241 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSL-PDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSS 241 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCc-cCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhccc
Confidence 5778888888888888877665 3432233444444 4556689999999999987544 33444444444444 45
Q ss_pred CChHHHHHHHHHHHHHhc---CCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh--hH--------HHHHHH
Q 002235 143 RHPYIRRNAILAVMAIYK---LPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--RA--------INYLLT 209 (949)
Q Consensus 143 ~~pyVRk~A~lal~ki~~---l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~--~a--------i~~L~~ 209 (949)
..+--|..++..+..+.+ +-.+|. ..++.+.+-.+| ++ +.+...|...+.-+-.+ +. ++.|.
T Consensus 242 ~~~~~~~~~~~~~~Wi~KaLv~R~~~~-~~~~~~~L~~lL-~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy- 316 (415)
T PF12460_consen 242 EDSELRPQALEILIWITKALVMRGHPL-ATELLDKLLELL-SS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLY- 316 (415)
T ss_pred CCcchhHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHh-CC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHH-
Confidence 566667777766655544 102222 222333332333 33 33334444443333222 10 11111
Q ss_pred HHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcc
Q 002235 210 HVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLS 289 (949)
Q Consensus 210 ~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~ 289 (949)
+| -++...+=+++..+...+...+..++-.|..+|++....|... .+..+..-+++-| +
T Consensus 317 --kQ-----R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-------------~l~~LlPLLlqsL-~ 375 (415)
T PF12460_consen 317 --KQ-----RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-------------ELPTLLPLLLQSL-S 375 (415)
T ss_pred --hH-----HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-------------HHHHHHHHHHHHh-C
Confidence 10 1111111122333322233344556666666666555444431 1222222234444 6
Q ss_pred CCchHHHHHHHHHHHHHHhhChhhHHHHHHhhee
Q 002235 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR 323 (949)
Q Consensus 290 ~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~ 323 (949)
.+|+.++..+|+.|..+....|.++.+|...++.
T Consensus 376 ~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 376 LPDADVLLSSLETLKMILEEAPELISEHLSSLIP 409 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 7888999999999999999999999999887653
No 95
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=12 Score=47.85 Aligned_cols=221 Identities=17% Similarity=0.191 Sum_probs=140.2
Q ss_pred cChhHHHHHHHHHHHhhhcCch-hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChH-------HHHHHHHHHHHHHc
Q 002235 217 WGELLQMVVLELIRKVCRTNKG-EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPT-------AIRAAANTYSQLLL 288 (949)
Q Consensus 217 ~~p~~q~~il~ll~~~~~~~p~-~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~-------~l~~~a~~li~lll 288 (949)
..++.+..+|.++..+++.-+. ....+........++.++.|+..+-+.|-.+.+.|+ .+..+-..+.+-+
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~- 706 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF- 706 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-
Confidence 3567788888888777664322 233444444444555578899888888888765432 1222222333333
Q ss_pred cCCchHHHHHHHHHHHHHHhhCh----hhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc---------CCCcHHHHHHH
Q 002235 289 SQSDNNVKLIVLDRLNELRSSHR----DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI---------TPRNINEVVLM 355 (949)
Q Consensus 289 ~~~d~nvr~iaL~~L~~l~~~~p----~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~---------~~~Nv~~Iv~~ 355 (949)
.+.+.-.++-.+..|..|.+.+| .++...+.+++-++++-|..-|+-|.++|..++ ++. ...++++
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lne 785 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNE 785 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHH
Confidence 34456678888888888888777 444455555555678889999999999999888 333 2334444
Q ss_pred HHHHHHH-hccCCccCCHHHHHHHHHHHHHhHccCcc-----cHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc
Q 002235 356 LKKEVVK-TQSGELEKNGEYRQMLIQAIHSCAIKFPE-----VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL 429 (949)
Q Consensus 356 L~kel~~-~~~~~~d~~~e~r~~lv~aI~~la~kf~~-----~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~ 429 (949)
+...+.. .++ | ..-.+..-|-++..+...|.. ....+++++..+|..+...++..+|.|++-++...|+.
T Consensus 786 fl~~Isagl~g---d-~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 786 FLSIISAGLVG---D-STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHhhhcc---c-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 4433332 222 1 112222226666666665543 24678888888899898999999999999999988874
Q ss_pred -----HHHHHHHHHHHhcc
Q 002235 430 -----RVSIITRLLDNFYQ 443 (949)
Q Consensus 430 -----~~~~l~~L~~~l~~ 443 (949)
.+.++..+.....+
T Consensus 862 ~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 23456666665554
No 96
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=11 Score=47.63 Aligned_cols=247 Identities=15% Similarity=0.166 Sum_probs=129.1
Q ss_pred CCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhcCCC----CHHH-HHHHHH--H
Q 002235 48 GETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNNLQHP----NEYI-RGVTLR--F 119 (949)
Q Consensus 48 G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv~NsL~KDL~~~----N~~i-R~~ALr--~ 119 (949)
|+|++...=.|++.+++.-+..--.+..=+.+-+.+...-.+ .++ .=|+.+..- +.+| +... -++||- +
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA 408 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQVIGSVID-LFNPAEDDSAWHGACLALAELA 408 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHH
Confidence 455555555566655554333333444444444433332111 333 223333332 4333 3322 223333 3
Q ss_pred hhcCCchhhHHHHHHHHHHhccCC--------ChHHHHHHHHHHHHHhcCCCCcccccch-----HHHHHHHHccCCChh
Q 002235 120 LCRLNETEIIEPLIPSVLQNLQHR--------HPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMIEKVLSTEQDPS 186 (949)
Q Consensus 120 L~~I~~~el~~~l~~~I~~~L~d~--------~pyVRk~A~lal~ki~~l~~~~~li~~~-----~e~l~~~L~~d~d~~ 186 (949)
+..+.-|+.++.+.|.|.+.+.-. ...||=+|+..+..+++- ..|+-++.+ ..++...+ -|.+..
T Consensus 409 ~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~Al-FDrevn 486 (1133)
T KOG1943|consen 409 LRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVAL-FDREVN 486 (1133)
T ss_pred hcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHh-cCchhh
Confidence 334567888999999999998543 456999999988888773 334333222 23333434 789999
Q ss_pred HHHHHHHHHHhcc-h-h---hHHHHHHHHHhhc--Cc-cChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH-HcCCchH
Q 002235 187 AKRNAFLMLFTCD-Q-D---RAINYLLTHVDRV--SE-WGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL-LNAPSTA 257 (949)
Q Consensus 187 v~~~Al~~L~~i~-~-~---~ai~~L~~~l~~i--~~-~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~l-L~s~s~a 257 (949)
|+++|..+|.|.- . . ..++ |....+.. .. .+-|.++. ......|...+.+++.+..- +.|=+..
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~-Lis~~dy~sV~~rsNcy~~l~------~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGIS-LISTIDYFSVTNRSNCYLDLC------VSIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchh-hhhhcchhhhhhhhhHHHHHh------HHHHhhhhHHHHHHHHHHhcccccccHH
Confidence 9999999998852 2 1 1233 22222211 11 12232211 11222344444444444332 5566788
Q ss_pred HHHHHHHHHHccCC-ChHHHH-HHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 002235 258 VIYECAGTLVSLSS-APTAIR-AAANTYSQLLLSQSDNNVKLIVLDRLNELR 307 (949)
Q Consensus 258 V~~Eaa~~l~~l~~-~~~~l~-~~a~~li~lll~~~d~nvr~iaL~~L~~l~ 307 (949)
++..+|.+|-.++. .|+.+. ..-.+++...+ ++|.+.|.-..-...++.
T Consensus 560 irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l-s~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYLADYVLPPLLDSTL-SKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc-CCChHHhhhhHHHHHHHH
Confidence 99999999988753 243332 12345555553 567777776555555444
No 97
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.35 E-value=1.6 Score=53.41 Aligned_cols=254 Identities=15% Similarity=0.244 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhCC--CCCCchhHHHHHhhcCCCC-cchhH-----------HHHHHHHHHhhcCCCCCCCchH-HHHH
Q 002235 34 KVDAMKKAIMLLLNG--ETLPQLFITIVRYVLPSED-HTIQK-----------LLLLYLEIIDKTDAKGRVLPEM-ILIC 98 (949)
Q Consensus 34 k~~aL~kli~l~~~G--~d~s~lf~~Vik~l~~s~d-~~lKr-----------L~YL~l~~~~~~~~d~~l~~e~-iLv~ 98 (949)
-.+.+++|....... .+....|...++.+ ..-+ -.+.. +-.+|+-.++.. |. ++. ..+.
T Consensus 290 ~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~---GT--~~a~~~i~ 363 (574)
T smart00638 290 IVEVLKHLVQDIASDVQEPAAAKFLRLVRLL-RTLSEEQLEQLWRQLYEKKKKARRIFLDAVAQA---GT--PPALKFIK 363 (574)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CC--HHHHHHHH
Confidence 336777776554332 34667888888744 3222 22222 222333444322 22 233 3444
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcC---CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCC--CCc----cccc
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRL---NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLP--QGE----QLLV 169 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I---~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~--~~~----~li~ 169 (949)
.-|++.=-++ ..+.-++-.+... -++++++.+.+.++.--..+++|+|..|+++.+.+...- ..+ .++.
T Consensus 364 ~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~ 441 (574)
T smart00638 364 QWIKNKKITP--LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE 441 (574)
T ss_pred HHHHcCCCCH--HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH
Confidence 5555422222 2333333333332 467777777766665555679999999999998766510 111 1122
Q ss_pred chHHHHHHHHc---cCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHH
Q 002235 170 DAPEMIEKVLS---TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKI 246 (949)
Q Consensus 170 ~~~e~l~~~L~---~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~ 246 (949)
.+.+.+...|. ++.|..-+..++.+|..+.-..++..|...+..-....+..+..++..|++++...|... .+.
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v---~~~ 518 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV---QEV 518 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH---HHH
Confidence 33332222221 345555566777888888776667777666542224567888888888888876666543 355
Q ss_pred HHHHHcCC--chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHH
Q 002235 247 IISLLNAP--STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDR 302 (949)
Q Consensus 247 L~~lL~s~--s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~ 302 (949)
+.+++.+. .+-|+..|...++...|....++.++ ..+..++++.|+-.+...
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia----~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIA----ELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHH----HHHhhcCcHHHHHHhHHh
Confidence 55555443 45699999999988876654454433 334456666665555444
No 98
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.29 E-value=0.52 Score=58.08 Aligned_cols=200 Identities=16% Similarity=0.215 Sum_probs=103.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhhc---CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC--CC------
Q 002235 95 ILICQNLRNNLQHPNEYIRGVTLRFLCR---LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL--PQ------ 163 (949)
Q Consensus 95 iLv~NsL~KDL~~~N~~iR~~ALr~L~~---I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l--~~------ 163 (949)
.++.+-|.+.--++.+.. .+|..|.. --+++++..+...++.--..+++++|..|+++++.+... ..
T Consensus 398 ~~i~~~I~~~~~~~~ea~--~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 398 KFIKDLIKSKKLTDDEAA--QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHHHTT-S-HHHHH--HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHcCCCCHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 445555555322333333 33333333 346677776666666555568999999999998876551 01
Q ss_pred ----CcccccchHHHHHHHHc---cCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcC
Q 002235 164 ----GEQLLVDAPEMIEKVLS---TEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN 236 (949)
Q Consensus 164 ----~~~li~~~~e~l~~~L~---~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~ 236 (949)
...+.+.+.+.+...|. ...|...+..++.+|..+.....+..|...+..-.......+..+|..++++....
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 12222333333333232 45566667777777877775556666665544322345666777777777775555
Q ss_pred chhHHHHHHHHHHHHcCC--chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 002235 237 KGEKGKYIKIIISLLNAP--STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRL 303 (949)
Q Consensus 237 p~~~~~li~~L~~lL~s~--s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L 303 (949)
|. ...+.+.+++.+. .+.|+..|...|+...|....++.+ ...+..++++.|.-.+...|
T Consensus 556 ~~---~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i----~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 556 PE---KVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRI----AQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HH---HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHH----HHHHTT-S-HHHHHHHHHHH
T ss_pred cH---HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHH----HHHHhhCchHHHHHHHHHhc
Confidence 54 3445555555543 3458888888888876655444433 34444566666655544443
No 99
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.26 E-value=0.87 Score=50.12 Aligned_cols=276 Identities=16% Similarity=0.171 Sum_probs=162.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCC-------chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCc
Q 002235 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLP-------QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (949)
Q Consensus 20 ~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s-------~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~ 92 (949)
-++-+.|-|.+.+....+..|.=.+++.-..-+ ...+..+.|+=.++...++-=+--++..++.-..+ +
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~----Q 149 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ----Q 149 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc----c
Confidence 345555667677777777666655555443221 23444455321333333333222233333221111 1
Q ss_pred h-HHH---HHHHHHhhcCCCCHHHHHHHHHHhhcCCc-hhhHHH------HHHHHHHhccCCCh--HHHHHHHHHHHHHh
Q 002235 93 E-MIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLNE-TEIIEP------LIPSVLQNLQHRHP--YIRRNAILAVMAIY 159 (949)
Q Consensus 93 e-~iL---v~NsL~KDL~~~N~~iR~~ALr~L~~I~~-~el~~~------l~~~I~~~L~d~~p--yVRk~A~lal~ki~ 159 (949)
- +.. ++--+..=|.+++.-||--|+-+|++|.. .+.... .+..+...+.+..+ ..-|+|--.+..+.
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 1 111 23345566789999999999999999952 222222 23344445545433 66678888888887
Q ss_pred cCCCCcccccch------HHHHHHHHccCCChhHHHHHHHHHHhcc--hhhHHH---------HHHHHHhhcCccChhHH
Q 002235 160 KLPQGEQLLVDA------PEMIEKVLSTEQDPSAKRNAFLMLFTCD--QDRAIN---------YLLTHVDRVSEWGELLQ 222 (949)
Q Consensus 160 ~l~~~~~li~~~------~e~l~~~L~~d~d~~v~~~Al~~L~~i~--~~~ai~---------~L~~~l~~i~~~~p~~q 222 (949)
+= +.| -|+| .+++.+++ ...|+.|...|+-++..+. +..+++ .|+.++ ...+--.|
T Consensus 230 RG-knP--~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL---s~~sa~iq 302 (526)
T COG5064 230 RG-KNP--PPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL---SHESAKIQ 302 (526)
T ss_pred CC-CCC--CCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh---cCcccccc
Confidence 72 233 2555 46677755 6788999999988887774 333332 233333 33444557
Q ss_pred HHHHHHHHHhhhcCchhHH-----HHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCC
Q 002235 223 MVVLELIRKVCRTNKGEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQS 291 (949)
Q Consensus 223 ~~il~ll~~~~~~~p~~~~-----~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~ 291 (949)
.-+||.++.+...+..... -++..+..+|.|.-..++-||+.+|.+++.. .+.+++ ++.+++.+| ++-
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll-s~a 381 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL-SSA 381 (526)
T ss_pred CHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH-HHH
Confidence 7888888887665433322 2457788889999999999999999999743 444544 335666666 455
Q ss_pred chHHHHHHHHHHHHHH
Q 002235 292 DNNVKLIVLDRLNELR 307 (949)
Q Consensus 292 d~nvr~iaL~~L~~l~ 307 (949)
+--+|--|.-.+....
T Consensus 382 e~k~kKEACWAisNat 397 (526)
T COG5064 382 EYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 5556655555555443
No 100
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.11 E-value=0.36 Score=58.97 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=112.8
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCC-CCCCchhHHHHHhhcCC----CCcchhHHHHHHHHHHhh-cCCC
Q 002235 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNG-ETLPQLFITIVRYVLPS----EDHTIQKLLLLYLEIIDK-TDAK 87 (949)
Q Consensus 14 ~~~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G-~d~s~lf~~Vik~l~~s----~d~~lKrL~YL~l~~~~~-~~~d 87 (949)
++.+.+.-|++.+.++.... .++..-+..+.... ++...++-.+.. ++.+ +...++.-+.|.+..+.. ...+
T Consensus 354 GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~-l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 354 GTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFE-LAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 45567777888888876532 22333333433333 333333333333 2222 233455555555544322 1111
Q ss_pred CC-----CCchHH-HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 002235 88 GR-----VLPEMI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL 161 (949)
Q Consensus 88 ~~-----l~~e~i-Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l 161 (949)
.+ +.++.+ -+.+.|.+..+..++..+-.+|++||+++.|..+..+.|.+. .-....+++|..|+.|+.++-.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~- 509 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAK- 509 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHH-
Confidence 10 011221 234555666667788889999999999999999999998876 3345678999999999999887
Q ss_pred CCCcccccchHHHHHH-HHccCCChhHHHHHHHHHHhcchhhH
Q 002235 162 PQGEQLLVDAPEMIEK-VLSTEQDPSAKRNAFLMLFTCDQDRA 203 (949)
Q Consensus 162 ~~~~~li~~~~e~l~~-~L~~d~d~~v~~~Al~~L~~i~~~~a 203 (949)
..|+.+.. .+.. ++....++.++..|+.+|....|..+
T Consensus 510 -~~p~~v~~---~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~ 548 (574)
T smart00638 510 -RDPRKVQE---VLLPIYLNRAEPPEVRMAAVLVLMETKPSVA 548 (574)
T ss_pred -hCchHHHH---HHHHHHcCCCCChHHHHHHHHHHHhcCCCHH
Confidence 67765543 2322 23456788899999999999988753
No 101
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.07 E-value=9.9 Score=45.05 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=135.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCC------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchH
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLN------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP 172 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~ 172 (949)
-.+.+-+.+++--||-..+.-|+.+. +..+...|...+.+-+-|+.|.||+-|+.|+.+.-.+.-+++ .+..
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~ 171 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIV 171 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHH
Confidence 34456667888888888777777653 366777777777788889999999999999998765311111 1234
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcC-chhHHHHHHHHHHHH
Q 002235 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN-KGEKGKYIKIIISLL 251 (949)
Q Consensus 173 e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~-p~~~~~li~~L~~lL 251 (949)
.++...+.+|+..-|++.|+..+. .++. ..+++..-..+++.. --.+.--+++.++++.- -+..+++. ++.--|
T Consensus 172 n~l~~~vqnDPS~EVRr~allni~-vdns-T~p~IlERarDv~~a--nRr~vY~r~Lp~iGd~~~lsi~kri~-l~ewgl 246 (885)
T COG5218 172 NLLKDIVQNDPSDEVRRLALLNIS-VDNS-TYPCILERARDVSGA--NRRMVYERCLPRIGDLKSLSIDKRIL-LMEWGL 246 (885)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHee-eCCC-cchhHHHHhhhhhHH--HHHHHHHHHhhhhcchhhccccceeh-hhhhcc
Confidence 566666677888889998864432 2222 345554443333211 11233334443332210 01111111 344445
Q ss_pred cCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhh-eeccCCCCH
Q 002235 252 NAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDV-LRALNSPNL 330 (949)
Q Consensus 252 ~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~i-l~~L~d~d~ 330 (949)
....-+|.-.|+.+|.+---.|...+ ...++..+ .-+.+. ++...+..+-+..|+++.. ..| ..+..|+..
T Consensus 247 ~dRe~sv~~a~~d~ia~~w~~~~d~~--lveLle~l-DvSr~s---v~v~aik~~F~~R~D~ls~--~eFPe~~w~d~T~ 318 (885)
T COG5218 247 LDREFSVKGALVDAIASAWRIPEDLR--LVELLEFL-DVSRRS---VLVAAIKGVFEKRPDVLSE--KEFPEYLWSDPTE 318 (885)
T ss_pred hhhhhhHHHHHHHHHHHHhccccccc--HHHHHHHH-hhhhHH---HHHHHHHHHHhhccccchh--hhcHHHHhhCchH
Confidence 56667888888888765322222221 12233333 222222 5555666677778887754 223 334566665
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHH
Q 002235 331 DIRRKTLDIVLELITPRNINEVVLM 355 (949)
Q Consensus 331 ~Ir~~aL~lL~~l~~~~Nv~~Iv~~ 355 (949)
.+.-.+= +.+..|=++|+.+++.+
T Consensus 319 E~tfL~r-t~~lyCldnNitell~~ 342 (885)
T COG5218 319 ENTFLSR-TELLYCLDNNITELLGR 342 (885)
T ss_pred HHHHHHH-HHHHHHHhccHHHHHhh
Confidence 5554332 23334678899988875
No 102
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=7.6 Score=46.99 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=81.7
Q ss_pred hHHHH-HHHHHHHHHHhC---CCCC-CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch-H-HHHHHHHHh
Q 002235 31 VPAKV-DAMKKAIMLLLN---GETL-PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE-M-ILICQNLRN 103 (949)
Q Consensus 31 ~~~k~-~aL~kli~l~~~---G~d~-s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e-~-iLv~NsL~K 103 (949)
..+|+ +.+.+.+..+-+ |+|+ ..+|-+++|.+ .++|...|.=+...+-.+ .++.++. || + =...-.+.+
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l--~d~~~ei-dd~vfn~l~e~l~~ 133 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALL--SDENAEI-DDDVFNKLNEKLLI 133 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHH--hcccccc-CHHHHHHHHHHHHH
Confidence 34444 777776665543 3332 46778888855 788888887666666666 4455665 55 3 244457777
Q ss_pred hcCCCCHHHHHHHHHHhhcCCchhhH--HHHHHHHHHhc-cCCChHHHHHHHHHHH
Q 002235 104 NLQHPNEYIRGVTLRFLCRLNETEII--EPLIPSVLQNL-QHRHPYIRRNAILAVM 156 (949)
Q Consensus 104 DL~~~N~~iR~~ALr~L~~I~~~el~--~~l~~~I~~~L-~d~~pyVRk~A~lal~ 156 (949)
-+.|.-|.||--|+-+||++...+.- -++...++..+ +|++|-|||+|+.++.
T Consensus 134 Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 134 RLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 88899999999999999999732111 12333344444 6899999999998875
No 103
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=94.92 E-value=0.082 Score=49.96 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=63.7
Q ss_pred ccccccCChhhhHHhhcccC---cCc--EEEee-ccCCCHHHHHHHHHHHcCCeecCCCCccCCCchHHHHHhhccccc-
Q 002235 830 YISPAVCTDAAFRTMWAEFE---WEN--KVAVN-TVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVF- 902 (949)
Q Consensus 830 yI~p~~~~~~~Fr~~W~efe---wEn--k~~v~-~~~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~- 902 (949)
|+.|+.++.++|-+.|..+. -|. .+.+. ....--.+.+..++..+|+.+|++-+..+. |+.|-.+|
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~~vDpnp~-------n~v~Agi~~ 73 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLDGVDPNPN-------NIVGAGIFH 73 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEETSSSSSTT-------SEEEEEEEE
T ss_pred CCCCccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecCCCCCCcc-------cEEEEEEEE
Confidence 78999999999999999994 232 33443 333334566888889999999987443333 33333333
Q ss_pred ---CceEEEEEEEEEecCCceEEEEEEeeCChhHHHhhhh
Q 002235 903 ---GEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGD 939 (949)
Q Consensus 903 ---ge~al~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~ 939 (949)
+..+.+=+++|-+. ..=...++|||.+.+++..|.+
T Consensus 74 t~~~g~~gcLlRlE~n~-~~~~~RlTvRst~~~vs~~l~~ 112 (113)
T PF02296_consen 74 TKSSGNVGCLLRLEPNQ-DAKMFRLTVRSTDPSVSKALCK 112 (113)
T ss_dssp -S-S-EEEEEEEEEEET-TTTEEEEEEEESSHHHHHHHHH
T ss_pred ecCCCcEEEEEEEeECC-cCCeEEEEEEECChhHHHHHhc
Confidence 23466667788863 3567899999999999987754
No 104
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=5.6 Score=48.94 Aligned_cols=100 Identities=23% Similarity=0.242 Sum_probs=65.8
Q ss_pred HHHHhhcCCC-CHHHHHHHHHHhhcCC---chh-----hHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 99 QNLRNNLQHP-NEYIRGVTLRFLCRLN---ETE-----IIEPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 99 NsL~KDL~~~-N~~iR~~ALr~L~~I~---~~e-----l~~~l~~~I~~~L~d~-~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
+.|..-|+.. +|+..--||.-||.+. +.+ .++.++|.+.++|.|. |+-+--.|+-|+++++. ..|.-+
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e--vlP~S~ 247 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE--VLPRSS 247 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hccchh
Confidence 5556666655 8899999999999753 333 4577999999999995 78999999999999999 555322
Q ss_pred ---cc---hHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002235 169 ---VD---APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (949)
Q Consensus 169 ---~~---~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~ 201 (949)
-+ +|=++++++ .=.=.-|.-.++.+|..|.+.
T Consensus 248 a~vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred heeecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHhh
Confidence 12 233444433 111123444555566655543
No 105
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.64 E-value=3.4 Score=46.00 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=45.2
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 134 ~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
..|..++.+.++.||+.|+.|++-+.- .+++...+...++...+ ...+..++..|+.++.++
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~~a~~~l~l~~~~~-~~~~~~v~~~al~~l~Dl 91 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCL--LDKELAKEHLPLFLQAL-QKDDEEVKITALKALFDL 91 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Confidence 445578899999999999999988777 56666655555555555 334778888888777664
No 106
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=13 Score=48.80 Aligned_cols=345 Identities=16% Similarity=0.227 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhCC--CCCCchhHHHHHhh---cCCCCcchhHHHHHHHHHHhhcCCCCCCCchH---HHHHHHHHhhcCC
Q 002235 36 DAMKKAIMLLLNG--ETLPQLFITIVRYV---LPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM---ILICQNLRNNLQH 107 (949)
Q Consensus 36 ~aL~kli~l~~~G--~d~s~lf~~Vik~l---~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~---iLv~NsL~KDL~~ 107 (949)
.+|+.+--.+... .-++..+-+|.+-+ +.++-.+.|--..+++.-+-.-.+..+.++++ .-+.=-.|-|..
T Consensus 1016 ~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK- 1094 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK- 1094 (1702)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6666665555544 12344555555443 24666777788888887764443432222222 112222234544
Q ss_pred CCHHHHH---HHHHHhhcCC-----------chhhHHHHHHHHHH-hccCCChHHHHHHHHHHHHHhcCCCCcc-cccch
Q 002235 108 PNEYIRG---VTLRFLCRLN-----------ETEIIEPLIPSVLQ-NLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVDA 171 (949)
Q Consensus 108 ~N~~iR~---~ALr~L~~I~-----------~~el~~~l~~~I~~-~L~d~~pyVRk~A~lal~ki~~l~~~~~-li~~~ 171 (949)
|-+|- .|.++|+++. ..+++..+.|++.. .+-|+-+.|||-++-.+.++.+ ..+. +-|.+
T Consensus 1095 --EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K--ssg~~lkP~~ 1170 (1702)
T KOG0915|consen 1095 --ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK--SSGKELKPHF 1170 (1702)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH--hchhhhcchh
Confidence 45554 4677777763 35677777777764 4458999999999999999999 5554 44556
Q ss_pred HHHHHHHH--ccCCChhHHH-HHHHHHHhcchhh----------------HHHHHHHHHh---------h--------cC
Q 002235 172 PEMIEKVL--STEQDPSAKR-NAFLMLFTCDQDR----------------AINYLLTHVD---------R--------VS 215 (949)
Q Consensus 172 ~e~l~~~L--~~d~d~~v~~-~Al~~L~~i~~~~----------------ai~~L~~~l~---------~--------i~ 215 (949)
++++..++ .++-.|.|.. -++.+ +++..+- ++..+++.++ . ++
T Consensus 1171 ~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1171 PKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG 1249 (1702)
T ss_pred hHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Confidence 66666543 2444455543 23333 3332210 1111111111 0 11
Q ss_pred --ccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHccCC
Q 002235 216 --EWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS--SAPTAIRAAANTYSQLLLSQS 291 (949)
Q Consensus 216 --~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~--~~~~~l~~~a~~li~lll~~~ 291 (949)
...-- -..|..+..++..+-.....++++.+...++..|++|+..+|.+..++- +.|+..+.....++..++...
T Consensus 1250 l~Tkvg~-A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~ 1328 (1702)
T KOG0915|consen 1250 LGTKVGC-ASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKD 1328 (1702)
T ss_pred CCcchhH-HHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccC
Confidence 11111 1222233333433333356889999999999999999999999998874 234444455666665554332
Q ss_pred chHHHHHHHHHHHHHHhhChhhHHHHHHhheecc----CCCCHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHhcc
Q 002235 292 DNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRAL----NSPNLDIRRKTLDIVLELI--TPRNINEVVLMLKKEVVKTQS 365 (949)
Q Consensus 292 d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L----~d~d~~Ir~~aL~lL~~l~--~~~Nv~~Iv~~L~kel~~~~~ 365 (949)
+ ..+-++...+..|+..+++.+.+|...|+-++ .+.+.....+==++....+ ....+.-...+....+-...-
T Consensus 1329 e-s~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~ 1407 (1702)
T KOG0915|consen 1329 E-SLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENIT 1407 (1702)
T ss_pred C-CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhc
Confidence 2 22355666666688888888888877765442 1211111111112222222 333443222222222221111
Q ss_pred CCccCCHHHHHHHHHHHHHhHccCc
Q 002235 366 GELEKNGEYRQMLIQAIHSCAIKFP 390 (949)
Q Consensus 366 ~~~d~~~e~r~~lv~aI~~la~kf~ 390 (949)
+ +.....|....++|..+|..-.
T Consensus 1408 n--n~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1408 N--NESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred c--chHHHHHHHHHHHHHHHccccc
Confidence 1 2345677888888888776543
No 107
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.50 E-value=4.9 Score=48.26 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=90.3
Q ss_pred CCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC-----CchhhHH-------HHH
Q 002235 66 EDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL-----NETEIIE-------PLI 133 (949)
Q Consensus 66 ~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I-----~~~el~~-------~l~ 133 (949)
+|..--|-+-+|+-.++.+.|. -|+=--+.+-+=|.+..-..|+.-+...+++ .+++|.+ .++
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~-----i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv 348 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPG-----IMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLV 348 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCch-----HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHH
Confidence 3444435555666666555542 1232357888889999999999999999987 3565555 577
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcCC-CCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLP-QGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 134 ~~I~~~L~d~~pyVRk~A~lal~ki~~l~-~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
.-+..-+.|.+||+|-+|+..+-+||.+| +.+.-..++.+++-..| .|...-|+++|+.++..+
T Consensus 349 ~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~l-qDrss~VRrnaikl~SkL 413 (1128)
T COG5098 349 GLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRL-QDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Confidence 77788889999999999999999999952 11111123455555666 788889999999987765
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.50 E-value=12 Score=46.90 Aligned_cols=158 Identities=11% Similarity=0.108 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHH-HHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHH
Q 002235 36 DAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLL-LLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRG 114 (949)
Q Consensus 36 ~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~-YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~ 114 (949)
+.+.+++..+..-.....+-+.+.+ +....-+.-|--+ =++...+.... +..+|.| ..+..+.=.+|.+|.+|.
T Consensus 181 e~l~~v~~~~~~~~~~~~lv~l~~~-l~~~d~~~sr~sacglf~~~~~~~~-~~~vk~e---lr~~~~~lc~d~~~~Vr~ 255 (759)
T KOG0211|consen 181 ESLLKVAVGLPKEKLREHLVPLLKR-LATGDWFQSRLSACGLFGKLYVSLP-DDAVKRE---LRPIVQSLCQDDTPMVRR 255 (759)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH-ccchhhhhcchhhhhhhHHhccCCC-hHHHHHH---HHHHHHhhccccchhhHH
Confidence 5666666555544343344444444 4333222222111 23334444332 2222222 345566667889999999
Q ss_pred HHHHHhhcCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-ccccchHHHHHHHHccCCChhHHH
Q 002235 115 VTLRFLCRLN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPEMIEKVLSTEQDPSAKR 189 (949)
Q Consensus 115 ~ALr~L~~I~----~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~li~~~~e~l~~~L~~d~d~~v~~ 189 (949)
.+-+-++.+. .......+.+...+...|....||=.|.-++..+..+=..+ +....+.+.+-++. .|.+..+++
T Consensus 256 ~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~-~d~~~~v~~ 334 (759)
T KOG0211|consen 256 AVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAV-EDGSWRVSY 334 (759)
T ss_pred HHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHh-cChhHHHHH
Confidence 9999988875 34444556777888889999999999998888777731223 44444444444433 677777877
Q ss_pred HHHHHHHhcc
Q 002235 190 NAFLMLFTCD 199 (949)
Q Consensus 190 ~Al~~L~~i~ 199 (949)
+......++.
T Consensus 335 ~~~~~~~~L~ 344 (759)
T KOG0211|consen 335 MVADKFSELS 344 (759)
T ss_pred HHhhhhhhHH
Confidence 7766665543
No 109
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.19 E-value=0.4 Score=44.59 Aligned_cols=101 Identities=25% Similarity=0.292 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHH-----HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH--
Q 002235 243 YIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM-- 314 (949)
Q Consensus 243 li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~-----~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l-- 314 (949)
.++.+..+|++.++.++..++.++.++... +.... .....+++++ .++++.++..++..|..|+...|...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 567777888888888999999999888654 32222 2334555555 56788999999999999987654322
Q ss_pred -HH--HHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 315 -VD--LIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 315 -~~--~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
.. ....++.++.+++..+++.++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 21 3556777888889999999999988765
No 110
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=14 Score=46.42 Aligned_cols=275 Identities=17% Similarity=0.241 Sum_probs=148.9
Q ss_pred cCCChHHHHH-------------HHHHHHHHhcCCCCcccccchHHHHHHHHc-------cCCChhHHHHHHHHHHhcc-
Q 002235 141 QHRHPYIRRN-------------AILAVMAIYKLPQGEQLLVDAPEMIEKVLS-------TEQDPSAKRNAFLMLFTCD- 199 (949)
Q Consensus 141 ~d~~pyVRk~-------------A~lal~ki~~l~~~~~li~~~~e~l~~~L~-------~d~d~~v~~~Al~~L~~i~- 199 (949)
+|++.|+||+ |..++..+.+. ++++..+.....+...|. ...|+.-...|+.++..++
T Consensus 369 ~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K-R~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~ 447 (1010)
T KOG1991|consen 369 EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK-RGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLAS 447 (1010)
T ss_pred cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHH
Confidence 3678899984 44555555552 346666665444433332 2234555556666655543
Q ss_pred ---hhhH----HHH-HHH-HHhhcCccChhHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHc-CCchHHHHHHHHHH
Q 002235 200 ---QDRA----INY-LLT-HVDRVSEWGELLQMVVLELIRKVCRT---NKGEKGKYIKIIISLLN-APSTAVIYECAGTL 266 (949)
Q Consensus 200 ---~~~a----i~~-L~~-~l~~i~~~~p~~q~~il~ll~~~~~~---~p~~~~~li~~L~~lL~-s~s~aV~~Eaa~~l 266 (949)
+... +.+ |.+ .+.......-+++.....++.+++.. ++......++...++|. ++.-.|+.|||-++
T Consensus 448 ~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalAL 527 (1010)
T KOG1991|consen 448 ILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALAL 527 (1010)
T ss_pred HHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHH
Confidence 1111 222 222 22233344556788889999999854 56667778888888888 55567999999998
Q ss_pred HccCCC----hHHHHHHHHHHHHHHcc---CCchHHHHHHHHHH-----HHHHhhChhhHHHHHHhheeccCC---CCHH
Q 002235 267 VSLSSA----PTAIRAAANTYSQLLLS---QSDNNVKLIVLDRL-----NELRSSHRDIMVDLIMDVLRALNS---PNLD 331 (949)
Q Consensus 267 ~~l~~~----~~~l~~~a~~li~lll~---~~d~nvr~iaL~~L-----~~l~~~~p~~l~~~~~~il~~L~d---~d~~ 331 (949)
-.+-.+ +..++.-+..+++-|++ +-++..---+++.+ .++....+++.+.....|.+|+.+ ++..
T Consensus 528 q~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~ 607 (1010)
T KOG1991|consen 528 QSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDES 607 (1010)
T ss_pred HHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 766322 23355555555554432 22222222222222 123333345556667778888763 2222
Q ss_pred HHH---------HHHHHHHhhcCCCcHHHHHHHH-------HHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH-
Q 002235 332 IRR---------KTLDIVLELITPRNINEVVLML-------KKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS- 394 (949)
Q Consensus 332 Ir~---------~aL~lL~~l~~~~Nv~~Iv~~L-------~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~- 394 (949)
.-- +++++++.-. +|..+|+..| ...+.+. + -.+|-.++..-+..+.-..++.+.
T Consensus 608 ~ddk~iaA~GiL~Ti~Til~s~--e~~p~vl~~le~~~l~vi~~iL~~-----~-i~dfyeE~~ei~~~~t~~~~~Isp~ 679 (1010)
T KOG1991|consen 608 DDDKAIAASGILRTISTILLSL--ENHPEVLKQLEPIVLPVIGFILKN-----D-ITDFYEELLEIVSSLTFLSKEISPI 679 (1010)
T ss_pred chHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHH-----h-hHHHHHHHHHHHhhhhhhhcccCHH
Confidence 222 2333333222 2222222222 1112111 1 235666666666655555544443
Q ss_pred --HHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Q 002235 395 --TVVHLLMDFLGDSNVASAIDVIIFVREIIE 424 (949)
Q Consensus 395 --~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~ 424 (949)
.++..+++.+.+.+-.-..++..++.+++.
T Consensus 680 mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 680 MWGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 567788888888887777777777776654
No 111
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.82 E-value=0.88 Score=54.23 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=105.1
Q ss_pred CchhHHHHHhhcCC---CCcchhHHHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC--c
Q 002235 52 PQLFITIVRYVLPS---EDHTIQKLLLLYLEIIDKTDAKGRVLPE-MILICQNLRNNLQHPNEYIRGVTLRFLCRLN--E 125 (949)
Q Consensus 52 s~lf~~Vik~l~~s---~d~~lKrL~YL~l~~~~~~~~d~~l~~e-~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~--~ 125 (949)
+.+-+-|...|..| +|.++.+.+|+-+..+--+..+ .=.| +-|.+-++- .||+|.||++|.-.|+.+. -
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~--fc~ehlpllIt~me---k~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE--FCSEHLPLLITSME---KHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHh---hCCCcceeccceeeccccceeh
Confidence 44444555545332 6677888888876653111100 0011 112222222 3999999999999988864 3
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-HH
Q 002235 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-AI 204 (949)
Q Consensus 126 ~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-ai 204 (949)
-.+++..-.++-+-|.|.+..|||++++.+.-+.- .+.=-++.....+..+| .|.|....--|=..+.++...+ ++
T Consensus 966 N~~~de~t~yLyrrL~De~~~V~rtclmti~fLil--agq~KVKGqlg~ma~~L-~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 966 NTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLIL--AGQLKVKGQLGKMALLL-TDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred hhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH--ccceeeccchhhhHhhc-cCCcchHHHHHHHHHHHHHhcccch
Confidence 45555566667778999999999999999988776 44433444444554544 8888887777777777776554 22
Q ss_pred -HHHHHHHhhcCc-----cChhHHHHHHHHHHHhhhc
Q 002235 205 -NYLLTHVDRVSE-----WGELLQMVVLELIRKVCRT 235 (949)
Q Consensus 205 -~~L~~~l~~i~~-----~~p~~q~~il~ll~~~~~~ 235 (949)
.-++.++..++. ..|| -.||+++..+...
T Consensus 1043 yn~fidifs~ls~~ae~g~e~f--k~II~FLt~fI~k 1077 (1128)
T COG5098 1043 YNGFIDIFSTLSSDAENGQEPF--KLIIGFLTDFISK 1077 (1128)
T ss_pred hhhhHHHHHHcCchhhcCCCcH--HHHHHHHHHHHHH
Confidence 223334443331 2233 4678888877654
No 112
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=27 Score=44.13 Aligned_cols=426 Identities=15% Similarity=0.193 Sum_probs=231.7
Q ss_pred CCCCchhHHHHHhhcCCCC-cchhHHHHHHHHHH-hhcCCCC--------CCCchHHHHHHHHHhhcCCCCHHHHHHHHH
Q 002235 49 ETLPQLFITIVRYVLPSED-HTIQKLLLLYLEII-DKTDAKG--------RVLPEMILICQNLRNNLQHPNEYIRGVTLR 118 (949)
Q Consensus 49 ~d~s~lf~~Vik~l~~s~d-~~lKrL~YL~l~~~-~~~~~d~--------~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr 118 (949)
+..+.+.+.+.+-+++... ..+|+.+=+|++.. .+..+++ -.-+|--++-+.|..-+-+.++.+|..==-
T Consensus 32 ~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~ 111 (1010)
T KOG1991|consen 32 EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTA 111 (1010)
T ss_pred hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 5567777777774543332 45699999999873 3333333 211223667777888887778888854433
Q ss_pred HhhcC---CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc----cc-----------ccchHHHHHHHHc
Q 002235 119 FLCRL---NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE----QL-----------LVDAPEMIEKVLS 180 (949)
Q Consensus 119 ~L~~I---~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~----~l-----------i~~~~e~l~~~L~ 180 (949)
+|-.| .-|+=-+.+.+.++..|...+...==.|++|++.+++ ... +. .|...++...+|
T Consensus 112 ~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k--~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll- 188 (1010)
T KOG1991|consen 112 CLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK--TYEWKKDEERQPLGEAVEELFPDILQIFNGLL- 188 (1010)
T ss_pred HHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH--HHhhccccccccHHHHHHHHHHHHHHHHHhhc-
Confidence 33333 4455568899999999999887777789999999887 443 11 111122333333
Q ss_pred cCCCh-hH--HHHHHHHHHhcc----------hhh--H-HHHHHHHHhh-cC-----------c------cChhHHHHHH
Q 002235 181 TEQDP-SA--KRNAFLMLFTCD----------QDR--A-INYLLTHVDR-VS-----------E------WGELLQMVVL 226 (949)
Q Consensus 181 ~d~d~-~v--~~~Al~~L~~i~----------~~~--a-i~~L~~~l~~-i~-----------~------~~p~~q~~il 226 (949)
.+.|- ++ +.--+..+..++ ++. + +..+..++++ ++ . .--|+--.+-
T Consensus 189 ~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~ 268 (1010)
T KOG1991|consen 189 SQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILN 268 (1010)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHH
Confidence 33332 22 111112111111 111 1 1222233332 11 1 2236666677
Q ss_pred HHHHHhhhcC---ch-----------hHHHHHHHHHHHHcC------CchHHHHHHHHHHHccCCChH-------HHHHH
Q 002235 227 ELIRKVCRTN---KG-----------EKGKYIKIIISLLNA------PSTAVIYECAGTLVSLSSAPT-------AIRAA 279 (949)
Q Consensus 227 ~ll~~~~~~~---p~-----------~~~~li~~L~~lL~s------~s~aV~~Eaa~~l~~l~~~~~-------~l~~~ 279 (949)
|++.||+... |. -...+++.+...|.. -++.|.|-+..-+-.+-+... .++..
T Consensus 269 Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~i 348 (1010)
T KOG1991|consen 269 RLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVI 348 (1010)
T ss_pred HHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence 8888875421 11 112222333332221 256777777766655432211 12222
Q ss_pred HHHHHHHHc--c-------CCchH---------------HHHHHHHHHHHHHhhC-hhhHHHHHHhheeccC------CC
Q 002235 280 ANTYSQLLL--S-------QSDNN---------------VKLIVLDRLNELRSSH-RDIMVDLIMDVLRALN------SP 328 (949)
Q Consensus 280 a~~li~lll--~-------~~d~n---------------vr~iaL~~L~~l~~~~-p~~l~~~~~~il~~L~------d~ 328 (949)
...++--++ + +.||. -+.++++.+..++.+. ++.|+.....+...+. .+
T Consensus 349 i~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~ 428 (1010)
T KOG1991|consen 349 IQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPP 428 (1010)
T ss_pred HHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCC
Confidence 222211111 1 11211 1347888888888766 7777765555444444 34
Q ss_pred CHHHHHH--HHHHHHhhc---C-CCcHHHHHHHHH-HHHHHhccCCccCCHHHHHHHHHHHHHhH-ccCcc--cHHHHHH
Q 002235 329 NLDIRRK--TLDIVLELI---T-PRNINEVVLMLK-KEVVKTQSGELEKNGEYRQMLIQAIHSCA-IKFPE--VASTVVH 398 (949)
Q Consensus 329 d~~Ir~~--aL~lL~~l~---~-~~Nv~~Iv~~L~-kel~~~~~~~~d~~~e~r~~lv~aI~~la-~kf~~--~~~~~l~ 398 (949)
+...|.+ ||.++..++ . ++-....++.+. .++-..-. .+-...|..+--.++..+ +.|+. .....++
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~---s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale 505 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ---SPYGYLRARACWVLSQFSSIDFKDPNNLSEALE 505 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc---CchhHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 4444443 676666554 2 233333333222 11111111 345678999999999988 67764 4578888
Q ss_pred HHHHHHh-CCCcccHHHHHHHHHHHHHhCcccHH-------HHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc-HHH
Q 002235 399 LLMDFLG-DSNVASAIDVIIFVREIIEMNPKLRV-------SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE-VEN 469 (949)
Q Consensus 399 ~L~~lL~-~~~~~v~~e~i~~l~~ii~~~p~~~~-------~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~-~~~ 469 (949)
...++|. +..-.+.-+++.+++-++...+...+ .+++.|+....+.+...+--.+=-++++|++...- +.+
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~e 585 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVE 585 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHH
Confidence 8888888 55556888999999999987776544 24555555555555555666666778888776553 344
Q ss_pred HHHHHHHHhCC
Q 002235 470 GIATIKQCLGE 480 (949)
Q Consensus 470 ~~~~i~~~l~~ 480 (949)
....+...+..
T Consensus 586 L~q~La~~F~k 596 (1010)
T KOG1991|consen 586 LCQNLAETFLK 596 (1010)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 113
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=11 Score=49.31 Aligned_cols=311 Identities=15% Similarity=0.160 Sum_probs=172.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCC-cccccch-HHHHHHHH--ccCCChhHHHHHHHHHHhcchhhH----
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG-EQLLVDA-PEMIEKVL--STEQDPSAKRNAFLMLFTCDQDRA---- 203 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~-~~li~~~-~e~l~~~L--~~d~d~~v~~~Al~~L~~i~~~~a---- 203 (949)
++|-+-+-=-|+++-|+.+ ...++...- .+ ...++++ .+++..+| +.++-..|+-+++.+|.++-+.+.
T Consensus 999 LIPrLyRY~yDP~~~Vq~a-M~sIW~~Li--~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDA-MTSIWNALI--TDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hhHHHhhhccCCcHHHHHH-HHHHHHHhc--cChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 4444444446899999864 455665554 44 3444444 36666655 256667899999999988754332
Q ss_pred HHHHHH----H---HhhcCccChhHHHHHHHHHHHhhh-----cCchhHHHHHHHHHHHHcC-----CchHHHHHHHHHH
Q 002235 204 INYLLT----H---VDRVSEWGELLQMVVLELIRKVCR-----TNKGEKGKYIKIIISLLNA-----PSTAVIYECAGTL 266 (949)
Q Consensus 204 i~~L~~----~---l~~i~~~~p~~q~~il~ll~~~~~-----~~p~~~~~li~~L~~lL~s-----~s~aV~~Eaa~~l 266 (949)
++.+.+ . .+++.+.---+--...+.+.++|- .++...+.+++.+.++|-. +-+.|+--|+.++
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHH
Confidence 222222 2 233322111223444555555543 2555667788888887754 4478999999999
Q ss_pred HccCC-ChHHHH----HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHH
Q 002235 267 VSLSS-APTAIR----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVL 341 (949)
Q Consensus 267 ~~l~~-~~~~l~----~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~ 341 (949)
+.+.. .+..++ .+...++..+-.-.+..+-|.+++..+ + ..+++......+- -++|- ..+++.+.
T Consensus 1156 ~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~-~---e~ealDt~R~s~a--ksspm----meTi~~ci 1225 (1702)
T KOG0915|consen 1156 MDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLIN-I---ETEALDTLRASAA--KSSPM----METINKCI 1225 (1702)
T ss_pred HHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhh-h---HHHHHHHHHHhhh--cCCcH----HHHHHHHH
Confidence 99864 233333 234445555544455667888887732 1 2233333322221 11111 23455555
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc----ccHHHHHHHHHHHHhCCCcccHHHHHH
Q 002235 342 ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP----EVASTVVHLLMDFLGDSNVASAIDVII 417 (949)
Q Consensus 342 ~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~----~~~~~~l~~L~~lL~~~~~~v~~e~i~ 417 (949)
.-.+..-.+++++.+.+-+.+.++ -.-|.-...-|..++.+++ |-...++..++.-+++.++.+......
T Consensus 1226 ~~iD~~vLeelip~l~el~R~sVg------l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAs 1299 (1702)
T KOG0915|consen 1226 NYIDISVLEELIPRLTELVRGSVG------LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFAS 1299 (1702)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCC------CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHH
Confidence 555666667777777654444332 2234444445555555554 445677778887788877777777777
Q ss_pred HHHHHHHh-CcccHHHHHH-HHHHHhcccch--HHHHHHHhhhcccCCC
Q 002235 418 FVREIIEM-NPKLRVSIIT-RLLDNFYQIRA--ARVCTCALWIIGEYCQ 462 (949)
Q Consensus 418 ~l~~ii~~-~p~~~~~~l~-~L~~~l~~i~~--~~v~~~~lwiLGEy~~ 462 (949)
++..+... .|+.-.+.++ .++.++.+-+. ......+.. ++.|..
T Consensus 1300 AmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~ 1347 (1702)
T KOG0915|consen 1300 AMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQ 1347 (1702)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhH
Confidence 88877764 3544444444 44445544333 223444444 666654
No 114
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.16 E-value=0.16 Score=46.20 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=55.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ 166 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~-----~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~ 166 (949)
+...++++||.+-+||-+|+.|.++.. ..-++.+...+...|.|.++||-=+|+-++..+.. ..|+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~--~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD--RHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH--HChH
Confidence 567789999999999999999998742 23456677888889999999999999999998888 6665
No 115
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.14 E-value=0.6 Score=57.53 Aligned_cols=182 Identities=19% Similarity=0.275 Sum_probs=102.2
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCC-CCCCchhHHHHHhhcC---CCCcchhHHHHHHHHHHhh--cCC-
Q 002235 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNG-ETLPQLFITIVRYVLP---SEDHTIQKLLLLYLEIIDK--TDA- 86 (949)
Q Consensus 14 ~~~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G-~d~s~lf~~Vik~l~~---s~d~~lKrL~YL~l~~~~~--~~~- 86 (949)
++.+.+.-+++.+.++..... ++..-+..+...- ++...++-.+..++.. .++..++.-+.|.+..+.. +..
T Consensus 392 GT~~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 392 GTNPAVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp -SHHHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 345566778888888654322 2333444544444 5555555555443211 2344566666665544321 111
Q ss_pred ---------CCCCCchH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 002235 87 ---------KGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVM 156 (949)
Q Consensus 87 ---------d~~l~~e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ 156 (949)
...+.++. --..+.+.+.....++.-+-.+|++|++++.|+.++.+.|.+..-- +....+|-.|+.|+.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALR 549 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTT
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHH
Confidence 22333333 2344566666677888999999999999999998887776444332 458899999999999
Q ss_pred HHhcCCCCcccccchHHHHHHH-HccCCChhHHHHHHHHHHhcchhh
Q 002235 157 AIYKLPQGEQLLVDAPEMIEKV-LSTEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 157 ki~~l~~~~~li~~~~e~l~~~-L~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
++.. ..|+.+.+ ++... .....++.++.+|+.+|...+|..
T Consensus 550 ~~~~--~~~~~v~~---~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 550 RLAK--HCPEKVRE---ILLPIFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp TGGG--T-HHHHHH---HHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred HHhh--cCcHHHHH---HHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 8877 66655443 23222 234567889999999999998875
No 116
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.04 E-value=2.3 Score=47.37 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=75.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhhc--CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch-
Q 002235 95 ILICQNLRNNLQHPNEYIRGVTLRFLCR--LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA- 171 (949)
Q Consensus 95 iLv~NsL~KDL~~~N~~iR~~ALr~L~~--I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~- 171 (949)
-|..+-+..-++|+++.+|..|+++||- +.+.+++..-.+-+.+++...++.||-.|+-++.-+... .+.+.++..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~-~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT-HGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCchhccchh
Confidence 4566777789999999999999999875 568899999999999999777999999999999888774 444444332
Q ss_pred -----------HHHHHHHHccCCChhHHHHHHHHHHh
Q 002235 172 -----------PEMIEKVLSTEQDPSAKRNAFLMLFT 197 (949)
Q Consensus 172 -----------~e~l~~~L~~d~d~~v~~~Al~~L~~ 197 (949)
.+++.++| .+.++.++..|..-++.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCK 140 (298)
T ss_pred ccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 23555655 33466666666555443
No 117
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.00 E-value=0.6 Score=42.90 Aligned_cols=67 Identities=9% Similarity=0.236 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhhe----eccCCCCHHHHHHHHHHHH
Q 002235 273 PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVL----RALNSPNLDIRRKTLDIVL 341 (949)
Q Consensus 273 ~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il----~~L~d~d~~Ir~~aL~lL~ 341 (949)
...+..+..+++..| +++|+.|||.+.+.|..+.+..+..+-+|..+++ ++..|+|..||.-| ++|-
T Consensus 22 ~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 22 SKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLD 92 (97)
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHH
Confidence 445667778888766 7899999999999999999876666655655554 55789999998866 4443
No 118
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.74 E-value=1.4 Score=45.65 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh---hChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHH
Q 002235 276 IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS---SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEV 352 (949)
Q Consensus 276 l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~---~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~I 352 (949)
++.-...++++. -+++..+|+.|++.+..+.+ .||.- +++.++.+..|++..||.+|..++..+..+. +.+
T Consensus 6 ~Qryl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP~~---cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~--~s~ 79 (187)
T PF12830_consen 6 VQRYLKNILELC-LSSDDSVRLAALQVLELILRQGLVNPKQ---CVPTLIALETSPNPSIRSRAYQLLKELHEKH--ESL 79 (187)
T ss_pred HHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCChHH---HHhHhhhhhCCCChHHHHHHHHHHHHHHHHh--HHH
Confidence 334445556654 36788999999999988876 37754 4555777778999999999999887654322 111
Q ss_pred HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCccc---HHHHHHHHHHHHHhCccc
Q 002235 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVAS---AIDVIIFVREIIEMNPKL 429 (949)
Q Consensus 353 v~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v---~~e~i~~l~~ii~~~p~~ 429 (949)
+ .....+.|. ...++-..+-.+..... .......+-.+++.....
T Consensus 80 v---------------------~~~~~~gi~-----------~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~ 127 (187)
T PF12830_consen 80 V---------------------ESRYSEGIR-----------LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKS 127 (187)
T ss_pred H---------------------HHHHHHHHH-----------HHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHh
Confidence 1 111222221 11111111111111111 334456666677666677
Q ss_pred HHHHHHHHHHHhcccc-hHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHhCCCCCcC
Q 002235 430 RVSIITRLLDNFYQIR-AARVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFS 485 (949)
Q Consensus 430 ~~~~l~~L~~~l~~i~-~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l~~~p~~~ 485 (949)
|.+.+..|+..++.-. ... ++..+..-.++.++.+.+..+|+..
T Consensus 128 R~~Fl~~l~k~f~~~~~~~~------------~~~~~~~l~~~~Fla~nLA~l~y~~ 172 (187)
T PF12830_consen 128 RRKFLKSLLKQFDFDLTKLS------------SESSPSDLDFLLFLAENLATLPYQT 172 (187)
T ss_pred HHHHHHHHHHHHHhhccccc------------cccchhHHHHHHHHHHHHhcCCCCC
Confidence 8888999999886521 111 2233344566778888888888743
No 119
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=32 Score=42.58 Aligned_cols=141 Identities=15% Similarity=0.273 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC--CCchhHHHHHhhcC------CCCcchh-HHHHHHHHHHhhc-----
Q 002235 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGET--LPQLFITIVRYVLP------SEDHTIQ-KLLLLYLEIIDKT----- 84 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d--~s~lf~~Vik~l~~------s~d~~lK-rL~YL~l~~~~~~----- 84 (949)
+.=+|+.++..|...|+.+...++.-+..-.+ ++..|-..++.+++ |.|-.-| +..||+.. ++-.
T Consensus 363 leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~ta-laik~~t~~ 441 (960)
T KOG1992|consen 363 LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTA-LAIKGQTAK 441 (960)
T ss_pred HHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHH-HHhhcchhh
Confidence 34499999999887666655566665554443 35566666665665 3333333 33344333 3211
Q ss_pred ---CCCCCCCchHHHHHHHHHhhcCCC----CHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhccCCChHHHHHHHHH
Q 002235 85 ---DAKGRVLPEMILICQNLRNNLQHP----NEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILA 154 (949)
Q Consensus 85 ---~~d~~l~~e~iLv~NsL~KDL~~~----N~~iR~~ALr~L~~I~~---~el~~~l~~~I~~~L~d~~pyVRk~A~la 154 (949)
....++.+-.=-..|.+.-||++| +|..++-||+.+--.+. ++.+=.++|.+.+.|...++-|-+-|+.|
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 112233222335678888999884 57899999999887764 56666677778888888999999999999
Q ss_pred HHHHhc
Q 002235 155 VMAIYK 160 (949)
Q Consensus 155 l~ki~~ 160 (949)
+=|+..
T Consensus 522 iEkil~ 527 (960)
T KOG1992|consen 522 IEKLLT 527 (960)
T ss_pred HHhccc
Confidence 999887
No 120
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=92.57 E-value=47 Score=44.94 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHH
Q 002235 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSLS--SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDL 317 (949)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~--~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~ 317 (949)
-..++.+...+|++..+.|+-=++.....+- .+.-.-+.+...++..+.+..+.++. .||+.|..|+..+|..+.+|
T Consensus 433 f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 433 FPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQPF 511 (1426)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHHHH
Confidence 3467788888999888876544443332221 12212345777888888788888886 88999999999999988776
Q ss_pred HHhh---eeccCCCC-HHHHHHHHHHHHhhc
Q 002235 318 IMDV---LRALNSPN-LDIRRKTLDIVLELI 344 (949)
Q Consensus 318 ~~~i---l~~L~d~d-~~Ir~~aL~lL~~l~ 344 (949)
...| +.++.+=+ ..||+ ..+++..++
T Consensus 512 a~~l~giLD~l~~Ls~~qiR~-lf~il~~La 541 (1426)
T PF14631_consen 512 ATFLKGILDYLDNLSLQQIRK-LFDILCTLA 541 (1426)
T ss_dssp HHHHHGGGGGGGG--HHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHH-HHHHHHHHh
Confidence 5544 44444332 34444 477777665
No 121
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.56 E-value=12 Score=40.90 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHH----HHHhheeccC-CCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHh----
Q 002235 293 NNVKLIVLDRLNELRSSHRDIMVD----LIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKT---- 363 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~p~~l~~----~~~~il~~L~-d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~---- 363 (949)
...|+.+++.|..+..+++..++. ++..++.+.+ ..|+--=..+.+++..+...=.+....++|..-+..|
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~ 175 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPIT 175 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeee
Confidence 356777777777777666554432 2223333332 3455444455555555444333344444444332222
Q ss_pred -ccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcc
Q 002235 364 -QSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK 428 (949)
Q Consensus 364 -~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~ 428 (949)
.....|...=-+.++..+++.|-..-|..+++++..|++=|..+...+..+++..+...+..++.
T Consensus 176 F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 176 FRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred eeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 11000111114567777777776666777889999999999988877888888888888887763
No 122
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=5.7 Score=47.86 Aligned_cols=128 Identities=17% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCcchhHHHHHHHHHHhhcCCCCCCCchH-HHHHHHH-HhhcCCCCHHHHHHHHHHhhcCC--------chhhH-HHHHH
Q 002235 66 EDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNL-RNNLQHPNEYIRGVTLRFLCRLN--------ETEII-EPLIP 134 (949)
Q Consensus 66 ~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv~NsL-~KDL~~~N~~iR~~ALr~L~~I~--------~~el~-~~l~~ 134 (949)
++..+-+.|=+|...+- ..+|+|+.|+ -=++.-+ +.-+--+..-+-+--=+.|+... ..+|+ .-..|
T Consensus 100 ~ks~~~~~geI~frAWk--ea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p 177 (1005)
T KOG1949|consen 100 QKSLMVYIGEIYFRAWK--EASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKP 177 (1005)
T ss_pred cHHHHHHHhHHHHHHHH--HhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH
Confidence 45556677766666653 3456665654 1122221 22222222122222223344332 23333 33456
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch--------HHHHHHHHccCCChhHHHHHHHHHHh
Q 002235 135 SVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA--------PEMIEKVLSTEQDPSAKRNAFLMLFT 197 (949)
Q Consensus 135 ~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~--------~e~l~~~L~~d~d~~v~~~Al~~L~~ 197 (949)
.+-+.|.-+|..||.+|+.-....|.+ .+|++-... .+.++++| .|.=|+|+..|+.-++.
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHH
Confidence 777889999999999999999999998 888873221 24566755 78888998888755443
No 123
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.27 E-value=0.17 Score=40.96 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCcccccc----hHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 145 PYIRRNAILAVMAIYKLPQGEQLLVD----APEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 145 pyVRk~A~lal~ki~~l~~~~~li~~----~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
|.||+.|+.+++.+.. ..++.... ..+.+..+| .|+++.|+.+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~--~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE--GCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT--TTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc--ccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 6899999999998776 55554433 334444544 788889999999988753
No 124
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.97 E-value=12 Score=40.07 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhHccCcccHHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHH
Q 002235 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFL-GDSNVASAIDVIIFVREIIE 424 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL-~~~~~~v~~e~i~~l~~ii~ 424 (949)
.+.......+++.+|...|.....++..+..+| .+.++.+..-+++++..+.+
T Consensus 98 ~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 98 WECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 344444456899999999998889999999999 56655555556778777764
No 125
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=2.5 Score=51.14 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=108.7
Q ss_pred HHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHH-
Q 002235 41 AIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRF- 119 (949)
Q Consensus 41 li~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~- 119 (949)
-+.+.|.|.--...+-+...+--.++--.++|=+=+-+.... +.. +| .+=+-|.+-+.+.+|..|..-.-+
T Consensus 472 ~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~-ygr-----qe--~Ad~lI~el~~dkdpilR~~Gm~t~ 543 (929)
T KOG2062|consen 472 AMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVV-YGR-----QE--DADPLIKELLRDKDPILRYGGMYTL 543 (929)
T ss_pred hhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH-hhh-----hh--hhHHHHHHHhcCCchhhhhhhHHHH
Confidence 345667776666777777775433333345554333332221 111 12 122333344456688888554433
Q ss_pred -hhcCCc--hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHH
Q 002235 120 -LCRLNE--TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLF 196 (949)
Q Consensus 120 -L~~I~~--~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~ 196 (949)
|+...+ -..+..|.+ =++.|.|.-|||+|+.|++=+.- .+|+..+...+ +|...-||.|++.|..+|.
T Consensus 544 alAy~GTgnnkair~lLh---~aVsD~nDDVrRaAVialGFVl~--~dp~~~~s~V~----lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 544 ALAYVGTGNNKAIRRLLH---VAVSDVNDDVRRAAVIALGFVLF--RDPEQLPSTVS----LLSESYNPHVRYGAAMALG 614 (929)
T ss_pred HHHHhccCchhhHHHhhc---ccccccchHHHHHHHHHheeeEe--cChhhchHHHH----HHhhhcChhhhhhHHHHHh
Confidence 333333 222222222 23578999999999999998777 78877665433 3445678999999988888
Q ss_pred hcchhh----HHHHHHHHHhhcCccChhH-HHHHHHHHHHhhhcCchh---HHHHHHHHHHHHcCC--chHHHHHHHHH
Q 002235 197 TCDQDR----AINYLLTHVDRVSEWGELL-QMVVLELIRKVCRTNKGE---KGKYIKIIISLLNAP--STAVIYECAGT 265 (949)
Q Consensus 197 ~i~~~~----ai~~L~~~l~~i~~~~p~~-q~~il~ll~~~~~~~p~~---~~~li~~L~~lL~s~--s~aV~~Eaa~~ 265 (949)
-.|... |+..|-.+.. +...|. |-.+|-+-..++..++.. ...|.+.+.+++..+ +.++.|.|+-+
T Consensus 615 IaCAGtG~~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 615 IACAGTGLKEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred hhhcCCCcHHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 766543 4444333322 222332 444444433344443322 234445555555443 44666766554
No 126
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.40 E-value=4.3 Score=49.53 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHhHccCccc-------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccH-----HHHHHHH
Q 002235 370 KNGEYRQMLIQAIHSCAIKFPEV-------ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR-----VSIITRL 437 (949)
Q Consensus 370 ~~~e~r~~lv~aI~~la~kf~~~-------~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~-----~~~l~~L 437 (949)
.|..+|...|+-|..+-..-|.. .+.-+..||++|+|..+.++++++.++.++.+-+|..+ +-+...|
T Consensus 134 ~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerL 213 (970)
T KOG0946|consen 134 FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERL 213 (970)
T ss_pred hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 35678888888887654433432 24557889999999999999999999999999888754 3455666
Q ss_pred HHHhcc
Q 002235 438 LDNFYQ 443 (949)
Q Consensus 438 ~~~l~~ 443 (949)
+..++.
T Consensus 214 fsIIee 219 (970)
T KOG0946|consen 214 FSIIEE 219 (970)
T ss_pred HHHHHh
Confidence 666643
No 127
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.15 E-value=58 Score=43.14 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=64.5
Q ss_pred HHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC------CcHHHHHHHHHHHHHHhccCCccCCHH
Q 002235 300 LDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP------RNINEVVLMLKKEVVKTQSGELEKNGE 373 (949)
Q Consensus 300 L~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~~L~kel~~~~~~~~d~~~e 373 (949)
-+.+.+|....|+++-.-.+.+..=|..++...|.+|+.++..+... +.-..+..+. +.++. |++.+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f---l~r~~----D~~~~ 315 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAF---LGRFN----DISVE 315 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHH---HHHhc----cCChh
Confidence 34455666667888877777777778888999999999999987543 2233444333 23343 68899
Q ss_pred HHHHHHHHHHHhHccCcccHHHHH
Q 002235 374 YRQMLIQAIHSCAIKFPEVASTVV 397 (949)
Q Consensus 374 ~r~~lv~aI~~la~kf~~~~~~~l 397 (949)
.|.+.|+.+..|-...|..+....
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~ 339 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKAST 339 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHH
Confidence 999999999988887776654333
No 128
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.88 E-value=27 Score=41.65 Aligned_cols=173 Identities=10% Similarity=0.136 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchH-HHHHHHH--ccCCChhHHHHHHHHHHhcchhh
Q 002235 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP-EMIEKVL--STEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 126 ~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~-e~l~~~L--~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
.+++++...++.+.++.+.--||++.+--+..+.. .-.++-+... .++++++ .-|..+.|++.|+.+|+...
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d--~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--- 160 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD--VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--- 160 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH---
Confidence 46888899999999999999999998877776655 2111111111 1222211 13555666666666655432
Q ss_pred HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC-chHHHHHHHHHHHccC-CChHHHHHHH
Q 002235 203 AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP-STAVIYECAGTLVSLS-SAPTAIRAAA 280 (949)
Q Consensus 203 ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~-s~aV~~Eaa~~l~~l~-~~~~~l~~~a 280 (949)
.....+.....+.+..++++. |+-|+..|..-|..=. ..|-
T Consensus 161 -------------------------------e~~~neen~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~------ 203 (885)
T COG5218 161 -------------------------------EMELNEENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPC------ 203 (885)
T ss_pred -------------------------------hccCChHHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchh------
Confidence 211122222233333334332 3334443322221111 1121
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHh
Q 002235 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLE 342 (949)
Q Consensus 281 ~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~ 342 (949)
++.....-+-.|=|.+--+.|-+|....-.-+.+++.-+.-.+.|.+.++|.-+.+++..
T Consensus 204 --IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 204 --ILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred --HHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 122222222234455544555555432222234444445567889999999988888775
No 129
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.74 E-value=39 Score=39.51 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=121.0
Q ss_pred HHHHHHccCCChH--HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh--hHHHHHHhheecc-CCCCHHHHHHH
Q 002235 262 CAGTLVSLSSAPT--AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD--IMVDLIMDVLRAL-NSPNLDIRRKT 336 (949)
Q Consensus 262 aa~~l~~l~~~~~--~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~--~l~~~~~~il~~L-~d~d~~Ir~~a 336 (949)
....++.+.++-. ........++.+..+..++-.|..+++.+..+..++|. .+.+....+...+ +..+..-+..+
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 250 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQA 250 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHH
Confidence 3455666654311 23346677788888888899999999999999988543 4555555555444 56677788888
Q ss_pred HHHHHhhc------CCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCccc-----------------H
Q 002235 337 LDIVLELI------TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV-----------------A 393 (949)
Q Consensus 337 L~lL~~l~------~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~-----------------~ 393 (949)
++++.-++ +..-...+++.|.. ..+ ++++...+.++++.+..-++.. .
T Consensus 251 ~~~~~Wi~KaLv~R~~~~~~~~~~~L~~----lL~-----~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 251 LEILIWITKALVMRGHPLATELLDKLLE----LLS-----SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHH----HhC-----ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 88885332 34445556655553 222 3678888888888776543321 3
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHhcccchHHHHHHHhhhcccCCCC
Q 002235 394 STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL-----RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQS 463 (949)
Q Consensus 394 ~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~ 463 (949)
..++..|++..+..++........++..++++.|.. -..++.-|++.+ ++.++.++.+++-++-.....
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHc
Confidence 456666777666666555566788999999888842 123444455555 345556676666666554433
No 130
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.25 E-value=49 Score=39.81 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=91.7
Q ss_pred HHHHHHHHHc--c--------CCchHHHHHHHHHHHHH--Hh-hChhhHHHHHHhheeccCCC--CHHHHHHHHHHH---
Q 002235 279 AANTYSQLLL--S--------QSDNNVKLIVLDRLNEL--RS-SHRDIMVDLIMDVLRALNSP--NLDIRRKTLDIV--- 340 (949)
Q Consensus 279 ~a~~li~lll--~--------~~d~nvr~iaL~~L~~l--~~-~~p~~l~~~~~~il~~L~d~--d~~Ir~~aL~lL--- 340 (949)
.+..++++++ . .-++.+|.-.|..|.+= +. ..|..++- ++.++.++ +.-+|..++..+
T Consensus 273 ~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i----~~~~l~~~~~~~klk~~~l~F~~~~ 348 (501)
T PF13001_consen 273 LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQI----VFDGLYSDNTNSKLKSLALQFIRGS 348 (501)
T ss_pred HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHH----HhccccCCccccccchhcchhhhcc
Confidence 5566777776 2 23567777777777652 22 34444433 45577777 556777777777
Q ss_pred Hh---hcCCCcHHHHHHHHHHHHHHhcc-----CCccCCHHHHHHHHHHHHHhHccCcccH---HHHHHHHHHHHhCCCc
Q 002235 341 LE---LITPRNINEVVLMLKKEVVKTQS-----GELEKNGEYRQMLIQAIHSCAIKFPEVA---STVVHLLMDFLGDSNV 409 (949)
Q Consensus 341 ~~---l~~~~Nv~~Iv~~L~kel~~~~~-----~~~d~~~e~r~~lv~aI~~la~kf~~~~---~~~l~~L~~lL~~~~~ 409 (949)
.. -+++.-+..+-+.|..++.+..+ .+...+.+.|...-++||.++.+.|... -.++.+|++-|.++.+
T Consensus 349 ~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~ 428 (501)
T PF13001_consen 349 SWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESP 428 (501)
T ss_pred hHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcch
Confidence 33 33444444444444444444331 1123467899999999999999998754 3788888888877766
Q ss_pred ccHHHHHHHHHHHHHhCcc
Q 002235 410 ASAIDVIIFVREIIEMNPK 428 (949)
Q Consensus 410 ~v~~e~i~~l~~ii~~~p~ 428 (949)
.++..+-.++..++..++.
T Consensus 429 evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 429 EVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666666666666655444
No 131
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=89.84 E-value=41 Score=38.33 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=141.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHH----HHHHHH--------
Q 002235 144 HPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAIN----YLLTHV-------- 211 (949)
Q Consensus 144 ~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~----~L~~~l-------- 211 (949)
+.--+|-|.--+.+.|+ ++|++...+.+..-. |..|.|.++++.|+.=|=..++++++. -|.+++
T Consensus 37 ~~k~k~lasq~ip~~fk--~fp~la~~a~da~~d-~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFK--HFPSLADEAIDAQLD-LCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred chHHHHHHHHHHHHHHh--hCchhhhHHHHhhhc-cccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHH
Confidence 33445667777888888 888887766655545 347778888888887776666665432 222322
Q ss_pred -hhcCccChhHHHHHHHHHHH-hhhcCc-----hhHHHHHHHHHHHHcCCchHHHHHHHHHHHcc---C--CChHHHHHH
Q 002235 212 -DRVSEWGELLQMVVLELIRK-VCRTNK-----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSL---S--SAPTAIRAA 279 (949)
Q Consensus 212 -~~i~~~~p~~q~~il~ll~~-~~~~~p-----~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l---~--~~~~~l~~~ 279 (949)
.++...++-..++.+.+++. +...-+ ..-..+++-+...|.+-.--=.--+...|..+ . ..+..++.+
T Consensus 114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeL 193 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQEL 193 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHH
Confidence 23333455566666666553 221111 11123334444444442211000011111111 1 112233333
Q ss_pred HHHHHHHH----ccCCchHH--HHHHHHHHH--HHHhhChh-hHHH-HHHhheeccCCCC---HHHHHHHHHHHHhhcCC
Q 002235 280 ANTYSQLL----LSQSDNNV--KLIVLDRLN--ELRSSHRD-IMVD-LIMDVLRALNSPN---LDIRRKTLDIVLELITP 346 (949)
Q Consensus 280 a~~li~ll----l~~~d~nv--r~iaL~~L~--~l~~~~p~-~l~~-~~~~il~~L~d~d---~~Ir~~aL~lL~~l~~~ 346 (949)
|.-.-.+- ..-+|+.. ||+..-.+. -++..-|. -|-. .+..++-. .-| ..++..-|..|..|.+-
T Consensus 194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~--~fdkl~e~rkL~lLK~lAEMss~ 271 (460)
T KOG2213|consen 194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH--HFDKLTEERKLDLLKALAEMSSY 271 (460)
T ss_pred HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc--ccccchHHHHHHHHHHHHHhCcc
Confidence 32221110 12233322 443222111 12222221 1222 22223311 223 45555555555555432
Q ss_pred ---CcHHHHHHHHHHHHHHhccCCc---cCCHHHHHHHHHHHHHhHccCcccHHHHHH------HHHHHHhCCC-cccH-
Q 002235 347 ---RNINEVVLMLKKEVVKTQSGEL---EKNGEYRQMLIQAIHSCAIKFPEVASTVVH------LLMDFLGDSN-VASA- 412 (949)
Q Consensus 347 ---~Nv~~Iv~~L~kel~~~~~~~~---d~~~e~r~~lv~aI~~la~kf~~~~~~~l~------~L~~lL~~~~-~~v~- 412 (949)
.+..++++.+..-|..||..-. +-.-.+..-+.-+.+.++.|.|+......+ +=.+.+..+. .|..
T Consensus 272 ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~~ad~l~r~fq~y~K~ 351 (460)
T KOG2213|consen 272 TTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDFRADYLARGFQEYIKK 351 (460)
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccchHHHHhhhhHHHHHH
Confidence 3333333333333333443100 112345556677778889887765432222 1122332222 2222
Q ss_pred -HHHHHHHHHHHHhCcccHHHHHHHHHHHhcccch-HHHHHHHhhhcccC
Q 002235 413 -IDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRA-ARVCTCALWIIGEY 460 (949)
Q Consensus 413 -~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~-~~v~~~~lwiLGEy 460 (949)
.+.+....++++..|..-..-++.|...+..++. ++....++|++-..
T Consensus 352 t~E~L~t~edqiKat~~klT~~is~l~Kal~~~k~~~e~~~~Li~~l~Q~ 401 (460)
T KOG2213|consen 352 TGEALKTEEDQIKATALKLTQNISELIKALFHAKPDPEEEKQLIWTLVQN 401 (460)
T ss_pred HHHHHHHHHHHHHHhhhhhhccHHHHHhhHhcCCCchhHHHHHHHHHHHh
Confidence 3455566666655444333345555555555553 47888888888654
No 132
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=37 Score=37.72 Aligned_cols=306 Identities=12% Similarity=0.162 Sum_probs=165.8
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHH-HHHhhc----CCCCH
Q 002235 36 DAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQ-NLRNNL----QHPNE 110 (949)
Q Consensus 36 ~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~N-sL~KDL----~~~N~ 110 (949)
..|.++...+ -|-.+-.-+|.+.+-=+-.+|-..|-|..=-+..+- -|.|.+-..|+.+++| -|.|-+ -..|.
T Consensus 65 scLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcil-EdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 65 SCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL-EDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH-hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 6666665543 444443334444431224566666655544333321 1223222356777766 455533 56788
Q ss_pred HHHHHHHHHhhcCC-chhhHHHHHHH-------HHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch-----HHHHHH
Q 002235 111 YIRGVTLRFLCRLN-ETEIIEPLIPS-------VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMIEK 177 (949)
Q Consensus 111 ~iR~~ALr~L~~I~-~~el~~~l~~~-------I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~-----~e~l~~ 177 (949)
-+--.|+.++.+|. .|.-++.+.++ .+......|..+|-+.+--+.+|+. .+|...... .++++.
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS--iSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS--ISPESANECKKSGLLDLLEA 220 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh--cCHHHHhHhhhhhHHHHHHH
Confidence 88889999999884 45555555442 1222233477888888888999999 777655432 345544
Q ss_pred HHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHHhhcCccChhHHHHHH----HHHHHhhhcC--c-hhH
Q 002235 178 VLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVVL----ELIRKVCRTN--K-GEK 240 (949)
Q Consensus 178 ~L~~d~d~~v~~~Al~~L~~i~~~~----------ai~~L~~~l~~i~~~~p~~q~~il----~ll~~~~~~~--p-~~~ 240 (949)
-|..-.|..|+.+.+.+.+++..-. -++.+.+++. ..+.+||-....+ +++++.+..+ | ...
T Consensus 221 ElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIs-GadsdPfekfralmgfgkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 221 ELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIIS-GADSDPFEKFRALMGFGKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred HhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHH
Confidence 4545578899999999988764321 2344444443 2367788665333 3444333322 1 123
Q ss_pred HHHHHHH---HHHHcCCchHHHHHHHHHHHccCCChH---HHHH----HHHHHHHHHccCCchHHHHHHHHHHHHHHhh-
Q 002235 241 GKYIKII---ISLLNAPSTAVIYECAGTLVSLSSAPT---AIRA----AANTYSQLLLSQSDNNVKLIVLDRLNELRSS- 309 (949)
Q Consensus 241 ~~li~~L---~~lL~s~s~aV~~Eaa~~l~~l~~~~~---~l~~----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~- 309 (949)
+.++-.+ .+.+...++--+=.|+.++..+.++.+ .+.. ++..++-.....+.+.-..++++.|..|+..
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 4444444 344555666666667777777754311 1110 2333333332333333344555555555431
Q ss_pred --Chh------h--------H----H----HHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 310 --HRD------I--------M----V----DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 310 --~p~------~--------l----~----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
-|+ . + + .-..-|+.++.-|-+.|+.-++.++..+++.
T Consensus 380 rlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 380 RLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred cCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 110 0 0 0 0112255566777888999999888887764
No 133
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.71 E-value=18 Score=45.20 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHhhcCC--chhhHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCCh
Q 002235 109 NEYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDP 185 (949)
Q Consensus 109 N~~iR~~ALr~L~~I~--~~el~~~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~ 185 (949)
.+.+|+-++-+|+++. ...++.-++|.+.+-|+- ....||-+-++|+.-+.. .+.-.++.+.+.|...| .|+++
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~--~YTam~d~YiP~I~~~L-~Dp~~ 1020 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICS--SYTAMTDRYIPMIAASL-CDPSV 1020 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHH--HHHHHHHHhhHHHHHHh-cCchH
Confidence 3689999999999975 677888888888877754 567899999999988887 66666777777777777 89999
Q ss_pred hHHHHHHHHHHhcchhh
Q 002235 186 SAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 186 ~v~~~Al~~L~~i~~~~ 202 (949)
.|+++++.+|..+-+..
T Consensus 1021 iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988776554
No 134
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.47 E-value=16 Score=45.74 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=121.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCCh--hHHHHHHHHHHhcchhhHHHHHH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDP--SAKRNAFLMLFTCDQDRAINYLL 208 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~--~v~~~Al~~L~~i~~~~ai~~L~ 208 (949)
.++..+...-.|+-|.||++|+..+.|+.++ ... .....++..+..+++|+ +++-++-.++.+-..- -.+
T Consensus 472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l-~~~---~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~--~s~-- 543 (1529)
T KOG0413|consen 472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQL-QSH---REAFSILCATINSEMDEKFSAVESLEDLNVSGKAP--SSK-- 543 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-hcc---cchHHHHHHhcCCccccchhHHHhchhhhhcccCc--ccc--
Confidence 3555666667799999999999999999984 222 11235666656666665 3333333332221100 000
Q ss_pred HHHhhcCccChh---HHHHHHHHHHHhhhc-CchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHccCC--ChHHHHHHHH
Q 002235 209 THVDRVSEWGEL---LQMVVLELIRKVCRT-NKGEKGKYIKIIISLLNAPS-TAVIYECAGTLVSLSS--APTAIRAAAN 281 (949)
Q Consensus 209 ~~l~~i~~~~p~---~q~~il~ll~~~~~~-~p~~~~~li~~L~~lL~s~s-~aV~~Eaa~~l~~l~~--~~~~l~~~a~ 281 (949)
+ ....+| .|-.+++.=.++... +....+.++..|...++..+ ..|...|.+.+.+.-. +.......+.
T Consensus 544 ----~-~~tt~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L 618 (1529)
T KOG0413|consen 544 ----T-KKTTDLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVL 618 (1529)
T ss_pred ----c-ccchhhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHH
Confidence 0 011122 133444442222211 12223444455555555333 4577777777765532 2333334456
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH---HHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 282 TYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV---DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 282 ~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~---~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
.+++.+..++-..+|--+++.|.++....|.+++ ....-+...++|.+..+-.+|+.++.++..+
T Consensus 619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 7788888888888999999999999999998873 2333455567888999999999988887766
No 135
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=89.39 E-value=0.49 Score=44.72 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=60.5
Q ss_pred cccccCChhhhHHhhcccCcCc--EEEeecc--CCCHHHHHHHHHHHcCCeecCCCCccCCCchHHHHHhhcccccCceE
Q 002235 831 ISPAVCTDAAFRTMWAEFEWEN--KVAVNTV--IQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDA 906 (949)
Q Consensus 831 I~p~~~~~~~Fr~~W~efewEn--k~~v~~~--~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~ge~a 906 (949)
.....++.++|.++|.+++-.+ .+.+..+ ..+..+..+++ +.-|..++-... .++ ++--+-+|++..-|.-.
T Consensus 2 ~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~~~~~~~~~i~~~L-~~~nI~~iA~~~--~~~-~~~~~y~s~~~~~~~~f 77 (114)
T PF09066_consen 2 VEDGSMDPEEFQEMWKSLPDSNQQELSIQLNASVPSPDAIEEKL-QANNIFTIASGK--VDN-GQKFFYFSAKTTNGIWF 77 (114)
T ss_dssp -TT----HHHHHHHHHHS-GGG--EEEEEETT----HHHHHHHH-HCTT-EEEEEEE--CTT--EEEEEEEEEBTTS-EE
T ss_pred CCCCccCHHHHHHHHHhCCcccceEEEEeccccCCcHHHHHHHH-HHCCEEEEecCC--CCc-cccEEEEEEEcCCCcEE
Confidence 3446778899999999998777 5555432 34565555544 666888875422 111 34456678888888888
Q ss_pred EEEEEEEEecCCceEEEEEEeeCChhHHHhhhh
Q 002235 907 LVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGD 939 (949)
Q Consensus 907 l~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~ 939 (949)
|+.+.+..+ +-..++.+|+++..++..+-+
T Consensus 78 L~El~~~~~---~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 78 LVELTIDPG---SPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp EEEEEE-TT----SSEEEEEEESSCCCHHHHHH
T ss_pred EEEEEEcCC---CccEEEEEecCCHHHHHHHHH
Confidence 988877652 346789999999877655543
No 136
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=20 Score=44.60 Aligned_cols=64 Identities=25% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCc------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNE------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~------~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
.++--.--+.+|-+.+||-||+.|..+.. -..-+-+....+..+.|.++||-=+|+-++..+..
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE 797 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH
Confidence 34555556778899999999999998754 34455677888899999999999999997777666
No 137
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.12 E-value=1.1 Score=51.56 Aligned_cols=136 Identities=18% Similarity=0.304 Sum_probs=80.5
Q ss_pred HH-HHHHhcCCChHHHHHHHHHHHHHHhC--CCCCCchhHHHHHhhcC------CCCcchhHHH-HHHHHHHhhcCC--C
Q 002235 20 NE-IKEALEGNDVPAKVDAMKKAIMLLLN--GETLPQLFITIVRYVLP------SEDHTIQKLL-LLYLEIIDKTDA--K 87 (949)
Q Consensus 20 ~e-ir~~L~s~~~~~k~~aL~kli~l~~~--G~d~s~lf~~Vik~l~~------s~d~~lKrL~-YL~l~~~~~~~~--d 87 (949)
.| ||+.++..+...++.+-..++.-+.. +..+...++..+..+++ +.|..-|=-+ ||+.....+... .
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 44 99999876655554444444443332 34556677666665544 4454444333 333333322211 1
Q ss_pred C-----CCCchHHHHHHHHHhhcC---CCCHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhccCCChHHHHHHHHHH
Q 002235 88 G-----RVLPEMILICQNLRNNLQ---HPNEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILAV 155 (949)
Q Consensus 88 ~-----~l~~e~iLv~NsL~KDL~---~~N~~iR~~ALr~L~~I~---~~el~~~l~~~I~~~L~d~~pyVRk~A~lal 155 (949)
| .+.+-.=...+.+.-||+ +..|+.|+.|++++...+ .++.+..++|.+.++|.+++.-|+.-|+.|+
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1 111111234566666777 678999999999998876 5788888999999999999999999999986
No 138
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.00 E-value=2.8 Score=50.66 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhCh-hhH-HHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHH
Q 002235 275 AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR-DIM-VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEV 352 (949)
Q Consensus 275 ~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p-~~l-~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~I 352 (949)
..+....+++++| +.+|..+|..-|+.+.+....-+ +.+ ..-...+...+.|.|..+|..++..+..++..=|-..+
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 3345667778877 78899999999999998877533 233 23444566678899999999998888877765555555
Q ss_pred HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhH
Q 002235 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (949)
Q Consensus 353 v~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la 386 (949)
=.+|++++.++.. |.....|..-...++.++
T Consensus 406 n~Ellr~~ar~q~---d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 NGELLRYLARLQP---DEHGGIRTNTTICLGKIA 436 (690)
T ss_pred cHHHHHHHHhhCc---cccCcccccceeeecccc
Confidence 5678888888765 556677776666666655
No 139
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.38 E-value=35 Score=39.37 Aligned_cols=167 Identities=20% Similarity=0.323 Sum_probs=89.9
Q ss_pred HHHHhcCCCCcccccc-----hHHHHHHHHccCCChhHHHHHHHHHHhcchh-hHHHHHHHHHhhcCccChhHHHHHHHH
Q 002235 155 VMAIYKLPQGEQLLVD-----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD-RAINYLLTHVDRVSEWGELLQMVVLEL 228 (949)
Q Consensus 155 l~ki~~l~~~~~li~~-----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~-~ai~~L~~~l~~i~~~~p~~q~~il~l 228 (949)
+.++++ ..|++-.+ +.+.+..+++.|. ..|+.+|+.++-++-.+ ..++.+.+ .. -+| .+++.
T Consensus 7 Lv~l~~--~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~----l~--id~---~ii~S 74 (371)
T PF14664_consen 7 LVDLLK--RHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLK----LH--IDI---FIIRS 74 (371)
T ss_pred HHHHHH--hCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHH----cC--Cch---hhHhh
Confidence 445555 55544332 2344544455665 88898998888655433 22332221 11 122 22333
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 229 IRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 229 l~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
+.+..+ +..|+.+-+.++..++.-... ++ .+ | +..+.+++... ++++.++|.++++.|.+++-
T Consensus 75 L~~~~~-~~~ER~QALkliR~~l~~~~~------~~---~~---~---~~vvralvaia-e~~~D~lr~~cletL~El~l 137 (371)
T PF14664_consen 75 LDRDNK-NDVEREQALKLIRAFLEIKKG------PK---EI---P---RGVVRALVAIA-EHEDDRLRRICLETLCELAL 137 (371)
T ss_pred hcccCC-ChHHHHHHHHHHHHHHHhcCC------cc---cC---C---HHHHHHHHHHH-hCCchHHHHHHHHHHHHHHh
Confidence 333211 223444444444444433110 00 00 2 13444455544 45677899999999999999
Q ss_pred hChhhHHHH--HHhheeccCCCCHHHHHHHHHHHHhhcCCCcHH
Q 002235 309 SHRDIMVDL--IMDVLRALNSPNLDIRRKTLDIVLELITPRNIN 350 (949)
Q Consensus 309 ~~p~~l~~~--~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~ 350 (949)
.+|+++..+ ...+++.+-|+...+..-.+.+++.+.|.-+-.
T Consensus 138 ~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 138 LNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred hCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 999987542 344555666666667777788888777665443
No 140
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.32 E-value=58 Score=38.05 Aligned_cols=287 Identities=14% Similarity=0.202 Sum_probs=143.9
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch-----HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHH
Q 002235 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYL 207 (949)
Q Consensus 133 ~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~-----~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L 207 (949)
+.-+.+.+-..||-.|+..++-++.+. ++.-+.+.. .+.+..+|.+|+- .+-|+.+||++.-++-..
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlS---FD~glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K-- 418 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLS---FDSGLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAK-- 418 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhcc---ccccccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHH--
Confidence 334455677789999988877666542 454454432 3455566644443 345778888887655221
Q ss_pred HHHHhhcCccChhHHHHHHHHHHHhhhcC--chhHHHHHHHHH-HHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHH
Q 002235 208 LTHVDRVSEWGELLQMVVLELIRKVCRTN--KGEKGKYIKIII-SLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYS 284 (949)
Q Consensus 208 ~~~l~~i~~~~p~~q~~il~ll~~~~~~~--p~~~~~li~~L~-~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li 284 (949)
+-|++.-.++++.+..-.. ......++.++. -.++..|.-++.|. ..+ ..++
T Consensus 419 ----------~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceG-----------qgL----~~LM 473 (791)
T KOG1222|consen 419 ----------AMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEG-----------QGL----DLLM 473 (791)
T ss_pred ----------HHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecC-----------cch----HHHH
Confidence 1223444444444432111 111112222211 12222222121110 011 1123
Q ss_pred HHHccCCchHHHHHHHHHHHHHHhhC---hhhHHHHHHhheeccC-CCCHHHHHHHHHHHHhhc-CCCcHHHHHH-----
Q 002235 285 QLLLSQSDNNVKLIVLDRLNELRSSH---RDIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELI-TPRNINEVVL----- 354 (949)
Q Consensus 285 ~lll~~~d~nvr~iaL~~L~~l~~~~---p~~l~~~~~~il~~L~-d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv~----- 354 (949)
.+.++..|+- -+..+..|.++. ...|-+++.++...++ |++.+.-...|.++..+. +.--+..|++
T Consensus 474 ~ra~k~~D~l----LmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~Lv 549 (791)
T KOG1222|consen 474 ERAIKSRDLL----LMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLV 549 (791)
T ss_pred HHHhcccchH----HHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhcccc
Confidence 3333333321 122223333321 2356666666666554 444565566666666553 3445555544
Q ss_pred -HHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcc----cHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHhCc
Q 002235 355 -MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDS--NVASAIDVIIFVREIIEMNP 427 (949)
Q Consensus 355 -~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~----~~~~~l~~L~~lL~~~--~~~v~~e~i~~l~~ii~~~p 427 (949)
-++.+++...+ .++..-.+|-++|.++..-.- ....+++.|+++|... .+..+-.++.++.+++++ .
T Consensus 550 Pw~k~~L~pga~-----eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e 623 (791)
T KOG1222|consen 550 PWMKTQLQPGAD-----EDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-E 623 (791)
T ss_pred HHHHHhhcCCcc-----chhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-H
Confidence 34444443332 356888899999987753211 1135788899988743 334555555555555543 3
Q ss_pred ccHHHH------HHHHHHHhcccc--hHHHHHHHhhhcccCCC
Q 002235 428 KLRVSI------ITRLLDNFYQIR--AARVCTCALWIIGEYCQ 462 (949)
Q Consensus 428 ~~~~~~------l~~L~~~l~~i~--~~~v~~~~lwiLGEy~~ 462 (949)
..|+.+ -.+|++.+.|-. -.++.-.++-|+|||..
T Consensus 624 ~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 624 LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 333333 346777776632 23566677888888753
No 141
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=88.29 E-value=27 Score=40.91 Aligned_cols=287 Identities=14% Similarity=0.172 Sum_probs=147.5
Q ss_pred CCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHH--------HHHHHHhhcCCCCHHHHHHHHHHhh
Q 002235 50 TLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMIL--------ICQNLRNNLQHPNEYIRGVTLRFLC 121 (949)
Q Consensus 50 d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iL--------v~NsL~KDL~~~N~~iR~~ALr~L~ 121 (949)
....+|.++.+. .+++..++-+..+.-..+.. +|. . -+.+. .-..+.+=|++++.++.-.|.+.|+
T Consensus 53 ~y~~~~l~ll~~--~~~~d~vqyvL~Li~dll~~-~~~--~-~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQ--IDKDDTVRYVLTLIDDMLQE-DDT--R-VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHh-chH--H-HHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 344556665552 24555566555555554422 110 0 01111 1244556667889999999999999
Q ss_pred cCCc-------hhhHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCCCcc--cc--cchHHHHHHHHccCC-ChhHH
Q 002235 122 RLNE-------TEIIEPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQ--LL--VDAPEMIEKVLSTEQ-DPSAK 188 (949)
Q Consensus 122 ~I~~-------~el~~~l~~~I~~~L~d~-~pyVRk~A~lal~ki~~l~~~~~--li--~~~~e~l~~~L~~d~-d~~v~ 188 (949)
.+.. .+..+.+...+...+... ++.-.-.|+-|+..+.+ ..+- .+ .+..+.+-..|.... +...+
T Consensus 127 ~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~--~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 127 KLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR--VDEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC--CchHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 9852 233444556666666543 24444456677777766 2221 11 112334444453333 55678
Q ss_pred HHHHHHHHhcchh----------hHHHHHHHHHh----------------hc-Cc---cC-------hhHHHHHHHHHHH
Q 002235 189 RNAFLMLFTCDQD----------RAINYLLTHVD----------------RV-SE---WG-------ELLQMVVLELIRK 231 (949)
Q Consensus 189 ~~Al~~L~~i~~~----------~ai~~L~~~l~----------------~i-~~---~~-------p~~q~~il~ll~~ 231 (949)
|+++..+..+.-+ +.++.|+++++ .+ +. .+ ...++.+++++..
T Consensus 205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~ 284 (429)
T cd00256 205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS 284 (429)
T ss_pred HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence 8887776655311 11222222221 11 10 00 1122334444444
Q ss_pred hhhc---CchhHHH---HHHHHHHHHcCCchHHHH--HHHHHHHccCCCh---HHH-----------HHHHHHHHHHHcc
Q 002235 232 VCRT---NKGEKGK---YIKIIISLLNAPSTAVIY--ECAGTLVSLSSAP---TAI-----------RAAANTYSQLLLS 289 (949)
Q Consensus 232 ~~~~---~p~~~~~---li~~L~~lL~s~s~aV~~--Eaa~~l~~l~~~~---~~l-----------~~~a~~li~lll~ 289 (949)
+... |++..+. +-+.|.+-.+.-++-=.| |.-.-.+.++|.. .-- -.+...+++++-+
T Consensus 285 L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~ 364 (429)
T cd00256 285 LEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET 364 (429)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3322 3332211 122222222211211111 1111122333321 000 1355677787767
Q ss_pred CCchHHHHHHHHHHHHHHhhChh---hHHH--HHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 290 QSDNNVKLIVLDRLNELRSSHRD---IMVD--LIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 290 ~~d~nvr~iaL~~L~~l~~~~p~---~l~~--~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
++||.+--+|..=|.++++.||. ++.. -...++.+++++|+.||..||..+.++.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999984 4433 2344677889999999999999888763
No 142
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.82 E-value=37 Score=37.16 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhC
Q 002235 329 NLDIRRKTLDIVLELITPR--NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (949)
Q Consensus 329 d~~Ir~~aL~lL~~l~~~~--Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~ 406 (949)
....|....+++..+.+.. .+..+=..+..-+...+++ |+|+.=-..+-+-+..+...|+. ....+-+.+.+..
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~c 170 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSC 170 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhh
Confidence 4567777778777776542 1111111122222233333 67776666666666777777774 3444444444431
Q ss_pred ---------CC---cccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc---hHHHHHHHhhhcccCCC
Q 002235 407 ---------SN---VASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR---AARVCTCALWIIGEYCQ 462 (949)
Q Consensus 407 ---------~~---~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~---~~~v~~~~lwiLGEy~~ 462 (949)
.+ +-..++....++..+.-.|..-+.++..|++.|.+-. -.++.....+++..|+.
T Consensus 171 YFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 171 YFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred eeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 11 2355667889999988889888899999999997622 13567788888888875
No 143
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=10 Score=46.72 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=94.4
Q ss_pred HHHHHHhhcC-ccChhHHHHHHHHHHHh-hhcCch-----hHHHHHHHHHHHHcCCch-HHHHHHHHHHHccCCC-hHH-
Q 002235 206 YLLTHVDRVS-EWGELLQMVVLELIRKV-CRTNKG-----EKGKYIKIIISLLNAPST-AVIYECAGTLVSLSSA-PTA- 275 (949)
Q Consensus 206 ~L~~~l~~i~-~~~p~~q~~il~ll~~~-~~~~p~-----~~~~li~~L~~lL~s~s~-aV~~Eaa~~l~~l~~~-~~~- 275 (949)
++.+++..+. ..+|..|+..+.=+..+ .-.+.. -.+.++..|..+|++.+. -++..|+|++.+|-.. |..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 3444443332 33777776654433332 222221 146788999999999755 5999999999987422 221
Q ss_pred ---HH-HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH-H-HHHHhheeccCCCCHHHHHHHHHHHHhhcCC---
Q 002235 276 ---IR-AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM-V-DLIMDVLRALNSPNLDIRRKTLDIVLELITP--- 346 (949)
Q Consensus 276 ---l~-~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l-~-~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~--- 346 (949)
+. -++..+++.|+.-.--.+---+|+.|.+|.+.||..+ + .-++..+..|+=-...+.|.||.+..+.|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11 1455677777644333455568999999999999754 2 1222222222222567899999999988743
Q ss_pred ---CcHHHHHHHHHHHHHHhc
Q 002235 347 ---RNINEVVLMLKKEVVKTQ 364 (949)
Q Consensus 347 ---~Nv~~Iv~~L~kel~~~~ 364 (949)
.-|-+.+..|. .+..+.
T Consensus 328 d~f~~v~ealPlL~-~lLs~~ 347 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLT-PLLSYQ 347 (1051)
T ss_pred ccchHHHHHHHHHH-HHHhhc
Confidence 45566666554 444444
No 144
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.54 E-value=1.4 Score=41.92 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=46.5
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh---hHHH--HHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD---IMVD--LIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~---~l~~--~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
+...++++|-++.|+.+--+|+.=|.++++.+|. +++. ....++.+++++|+.||..||..+.++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4556667776666888888888888888888886 3322 3445677889999999999998887653
No 145
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.19 E-value=37 Score=41.32 Aligned_cols=177 Identities=17% Similarity=0.268 Sum_probs=113.3
Q ss_pred HHHHHHHhcCCChHHHH-HHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchh-HHHHHHHHHHhhcCCCCCCCchH-H
Q 002235 19 ANEIKEALEGNDVPAKV-DAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQ-KLLLLYLEIIDKTDAKGRVLPEM-I 95 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~-~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lK-rL~YL~l~~~~~~~~d~~l~~e~-i 95 (949)
...+|+-+.-=-.++|. +.+.+++|-+..| .++ |.+ +..|...| -.+.+++..+|..+||.. ++|| .
T Consensus 147 ~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p-----~l~---R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~-~e~mD~ 216 (1005)
T KOG1949|consen 147 HSKVREVLSYFHHQKKVRQGVEEMLYRLYKP-----ILW---RGL-KARNSEVRSNAALLFVEAFPIRDPDLH-AEEMDS 216 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH-----HHH---Hhh-ccCchhhhhhHHHHHHHhccCCCCCcc-HHHHHH
Confidence 34444444433334544 7888888877665 222 222 45566655 456788899999998853 2566 5
Q ss_pred HHHHHH---HhhcCCCCHHHHHHHHHHhhcCCc-------hhhHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcCCCC
Q 002235 96 LICQNL---RNNLQHPNEYIRGVTLRFLCRLNE-------TEIIEPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQG 164 (949)
Q Consensus 96 Lv~NsL---~KDL~~~N~~iR~~ALr~L~~I~~-------~el~~~l~~~I~~~L-~d~~pyVRk~A~lal~ki~~l~~~ 164 (949)
++-|.+ .+=|.|+-|.||+-|+.-+|++.. +.++-.++..|..-+ .|...-||-...-++.-+...|.+
T Consensus 217 i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s 296 (1005)
T KOG1949|consen 217 IIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS 296 (1005)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc
Confidence 555654 456789999999999999999753 344444455444444 356779999988888877663222
Q ss_pred cccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHH
Q 002235 165 EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINY 206 (949)
Q Consensus 165 ~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~ 206 (949)
..+.+...+.+.-.| .|+...|+.++..+|..|...+|.++
T Consensus 297 h~~le~~Lpal~~~l-~D~se~VRvA~vd~ll~ik~vra~~f 337 (1005)
T KOG1949|consen 297 HPLLEQLLPALRYSL-HDNSEKVRVAFVDMLLKIKAVRAAKF 337 (1005)
T ss_pred hhHHHHHHHhcchhh-hccchhHHHHHHHHHHHHHhhhhhhh
Confidence 222222222333323 68888999999999999888877654
No 146
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.82 E-value=38 Score=36.29 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHhheecc-CCCCHHHHHHHHHHHHhhcC
Q 002235 295 VKLIVLDRLNELRSSHRDIMVDLIMDVLRAL-NSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 295 vr~iaL~~L~~l~~~~p~~l~~~~~~il~~L-~d~d~~Ir~~aL~lL~~l~~ 345 (949)
..+..-..+..+....|+--.+....+..+| .+.+..++..+++.+..++.
T Consensus 100 ~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 100 CLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3444344556666667765455555566677 78889999999999999983
No 147
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.81 E-value=29 Score=35.78 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCC-Ccc--------cccc--------hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHH
Q 002235 147 IRRNAILAVMAIYKLPQ-GEQ--------LLVD--------APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLT 209 (949)
Q Consensus 147 VRk~A~lal~ki~~l~~-~~~--------li~~--------~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~ 209 (949)
||-+|+.|+..+.+ . ++. ++|+ .+.++. ++..|+++.|+..|+.+|..+-.. .-+||..
T Consensus 2 vR~~Al~~L~al~k--~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt-~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~ 77 (182)
T PF13251_consen 2 VRQAALQCLQALAK--STDKRSLFGYWPALLPDSVLQGRPATPSLLT-CILKDPSPKVRAAAASALAALLEG-SKPFLAQ 77 (182)
T ss_pred hhHHHHHHHHHHHH--hcCCceeHhhHHHHCCCCCCcCCCCCcchhH-HHHcCCchhHHHHHHHHHHHHHHc-cHHHHHH
Confidence 67777777777776 3 221 1222 123454 455899999999999998877555 2455543
Q ss_pred HHhh---cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC-chHHHHHHHHHH---HccCCC----hHHHHH
Q 002235 210 HVDR---VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP-STAVIYECAGTL---VSLSSA----PTAIRA 278 (949)
Q Consensus 210 ~l~~---i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~-s~aV~~Eaa~~l---~~l~~~----~~~l~~ 278 (949)
.-+. -..+.|+..... ..+ ..+...|...|++. ++.+.-++.|++ +.-.+. +..+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa-~~i-----------~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~ 145 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLA-SMI-----------MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTE 145 (182)
T ss_pred HHhcCCCCCCcccHHHHHH-HHH-----------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHH
Confidence 3321 123445532211 111 12335566666654 445555555554 444443 344555
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHhhC
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~ 310 (949)
.+..+.. ++.+.|++++-.++-.+..+....
T Consensus 146 ~v~~v~~-~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 146 VVTQVRP-LLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHH-HHhcCCCcHHHHHHHHHHHHHcCC
Confidence 5555444 446799999999999988877643
No 148
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.75 E-value=13 Score=41.73 Aligned_cols=143 Identities=18% Similarity=0.243 Sum_probs=83.4
Q ss_pred HhheeccCCCCHHHHHHHHHHHHhhcCC---CcHH---HHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc--Cc
Q 002235 319 MDVLRALNSPNLDIRRKTLDIVLELITP---RNIN---EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK--FP 390 (949)
Q Consensus 319 ~~il~~L~d~d~~Ir~~aL~lL~~l~~~---~Nv~---~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k--f~ 390 (949)
..+++.+..+|.+|..+++.++..+... .... +++..+.+.+....+ ..+.+++..+++++..+... |-
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~---~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLS---SSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT----HHHH---HHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhc---CCCcchHHHHHHHHHHHhCcchhH
Confidence 3466678889999999999999987643 2333 566666655554322 23456788888888887632 22
Q ss_pred cc--HHHHHHHHHHHHh------CCCc-ccHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHhcccchHHHHHHHhhh
Q 002235 391 EV--ASTVVHLLMDFLG------DSNV-ASAIDVIIFVREIIEMNPKL-----RVSIITRLLDNFYQIRAARVCTCALWI 456 (949)
Q Consensus 391 ~~--~~~~l~~L~~lL~------~~~~-~v~~e~i~~l~~ii~~~p~~-----~~~~l~~L~~~l~~i~~~~v~~~~lwi 456 (949)
.. ....+..+.++|+ ...+ ....+++..+= ++...|+. +..++..|++.+.+..-.++.|.++++
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW-lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW-LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH-HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 21 2577888888882 2211 23333322211 12222222 123789999999887778999999999
Q ss_pred cccCCCCCC
Q 002235 457 IGEYCQSLS 465 (949)
Q Consensus 457 LGEy~~~~~ 465 (949)
+-.......
T Consensus 264 l~Nl~~~~~ 272 (312)
T PF03224_consen 264 LRNLLSKAP 272 (312)
T ss_dssp HHHTTSSSS
T ss_pred HHHHHhccH
Confidence 988877666
No 149
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=93 Score=38.38 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHH--HhhChhhHHHHHHhheec-cCCCCHHHHHHHHHHHHhhc--CCCcHHHHH
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNEL--RSSHRDIMVDLIMDVLRA-LNSPNLDIRRKTLDIVLELI--TPRNINEVV 353 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l--~~~~p~~l~~~~~~il~~-L~d~d~~Ir~~aL~lL~~l~--~~~Nv~~Iv 353 (949)
-+.+++.-++.+.||-+||.++-++..- ...+-.++.. ++.. .+|.|.+|||.|.--|.-++ +++....+|
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~----lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V 594 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRR----LLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTV 594 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHH----hhcccccccchHHHHHHHHHheeeEecChhhchHHH
Confidence 3566777777788888888776655321 1123333333 3333 67888888888776665444 455666666
Q ss_pred HHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-hCccc---
Q 002235 354 LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIE-MNPKL--- 429 (949)
Q Consensus 354 ~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~-~~p~~--- 429 (949)
.-|.+ .-++.+|--+.-++|.+|-- .-...+++.|-.+..|..+++++-+...+.-|+- +.+.+
T Consensus 595 ~lLse----------s~N~HVRyGaA~ALGIaCAG--tG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk 662 (929)
T KOG2062|consen 595 SLLSE----------SYNPHVRYGAAMALGIACAG--TGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK 662 (929)
T ss_pred HHHhh----------hcChhhhhhHHHHHhhhhcC--CCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch
Confidence 54432 12567787788888876642 2234677777777778888888887666555543 33322
Q ss_pred HHHHHHHHHHHhcc
Q 002235 430 RVSIITRLLDNFYQ 443 (949)
Q Consensus 430 ~~~~l~~L~~~l~~ 443 (949)
-..+.+++...|.+
T Consensus 663 v~~frk~l~kvI~d 676 (929)
T KOG2062|consen 663 VNGFRKQLEKVIND 676 (929)
T ss_pred HHHHHHHHHHHhhh
Confidence 12345555555544
No 150
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.09 E-value=3.7 Score=37.38 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=16.3
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCCCc
Q 002235 323 RALNSPNLDIRRKTLDIVLELITPRN 348 (949)
Q Consensus 323 ~~L~d~d~~Ir~~aL~lL~~l~~~~N 348 (949)
.-+.|+..-||-.+|..|.+++..++
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC
Confidence 34566666677777776666655444
No 151
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.98 E-value=21 Score=44.99 Aligned_cols=189 Identities=13% Similarity=0.208 Sum_probs=127.3
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-ccccchHHHHH---HHHccCCChhHHHHHHHHHHhcch
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPEMIE---KVLSTEQDPSAKRNAFLMLFTCDQ 200 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~li~~~~e~l~---~~L~~d~d~~v~~~Al~~L~~i~~ 200 (949)
-.+++.-+-+.+...+.|++.-=|+.|+..+..+.. ... +..+...+++. +....|.|..|...|+..|..|..
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~--e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILE--EAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHh--ccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 345666778888899999999999999999999988 444 34444333332 333578888888888888888764
Q ss_pred hh---HHHHH----HHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHcc----
Q 002235 201 DR---AINYL----LTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSL---- 269 (949)
Q Consensus 201 ~~---ai~~L----~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l---- 269 (949)
.. ..+|. ..+++.+.+.-+.+.-.++..+..++... -..++.+.+...+.+.++.+.-+|...+-..
T Consensus 325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 32 22222 22334344444556667777777776533 3457889999999999999999988776543
Q ss_pred CC---ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh-hHHHHH
Q 002235 270 SS---APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD-IMVDLI 318 (949)
Q Consensus 270 ~~---~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~-~l~~~~ 318 (949)
.+ ....+..++..++... ++.+..||-++++.+..+.+.+.+ ++..+.
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 21 1234555555555543 678899999999999988876553 444433
No 152
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=85.70 E-value=1.1e+02 Score=38.60 Aligned_cols=301 Identities=14% Similarity=0.153 Sum_probs=157.8
Q ss_pred HHHHHHHHhhcCCC-CHHHHHHHHHHhhcCCc-----hhhHHHHHH-HHHHhccCCChHHHHHHHHHHHHHhcCCCCc--
Q 002235 95 ILICQNLRNNLQHP-NEYIRGVTLRFLCRLNE-----TEIIEPLIP-SVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-- 165 (949)
Q Consensus 95 iLv~NsL~KDL~~~-N~~iR~~ALr~L~~I~~-----~el~~~l~~-~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-- 165 (949)
.-.++.+++.+.+. -|..-+.|+-++++..+ +.+.+.... .+..+..|..|+||-+|+.+..-..+ ..+
T Consensus 448 ~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~ 525 (1005)
T KOG2274|consen 448 IELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLL 525 (1005)
T ss_pred HHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecc
Confidence 56788899998654 67777789988887654 344444333 33334578899999999987765444 111
Q ss_pred ccccchHHHHHHHHccCCChhH---HHHHHHHHHhcchhhH-------HHHHHHHHhhcCccChhHHHHHHHHHHHhhhc
Q 002235 166 QLLVDAPEMIEKVLSTEQDPSA---KRNAFLMLFTCDQDRA-------INYLLTHVDRVSEWGELLQMVVLELIRKVCRT 235 (949)
Q Consensus 166 ~li~~~~e~l~~~L~~d~d~~v---~~~Al~~L~~i~~~~a-------i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~ 235 (949)
+..|.+.+.+-. |..+...-| ...|++..+.++|+.+ .++++.++-. ...+|..-..+-+++..++..
T Consensus 526 ~~~p~ild~L~q-las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 526 SLQPMILDGLLQ-LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred ccchHHHHHHHH-HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHH
Confidence 122223333333 223332223 3344445555566643 2344555432 234564433444444444332
Q ss_pred ---CchhHHHHHHHHHHHHcCCc-------hHHHHHHHHHHHccCCCh---HHHHHHHHHHHHHHccCCchHHHHHHHHH
Q 002235 236 ---NKGEKGKYIKIIISLLNAPS-------TAVIYECAGTLVSLSSAP---TAIRAAANTYSQLLLSQSDNNVKLIVLDR 302 (949)
Q Consensus 236 ---~p~~~~~li~~L~~lL~s~s-------~aV~~Eaa~~l~~l~~~~---~~l~~~a~~li~lll~~~d~nvr~iaL~~ 302 (949)
-.....++++.+.+.|+.++ .+...+...+++.-.++| ..+..+-.++.+..+-+.|+..--.+=+.
T Consensus 604 ~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 604 AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHH
Confidence 12245778888888888765 245555555555555442 23334445555555556676666666666
Q ss_pred HHHHHhhChh-hH---------HHHHHhheeccCCCC------HHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHhc
Q 002235 303 LNELRSSHRD-IM---------VDLIMDVLRALNSPN------LDIRRKTLDIVLELITP--RNINEVVLMLKKEVVKTQ 364 (949)
Q Consensus 303 L~~l~~~~p~-~l---------~~~~~~il~~L~d~d------~~Ir~~aL~lL~~l~~~--~Nv~~Iv~~L~kel~~~~ 364 (949)
|..+....++ +. -.++++++.-|-|+. ..|=+..++++.+.+.+ .|+++|+....+.++...
T Consensus 684 Lra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 684 LRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAE 763 (1005)
T ss_pred HHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhh
Confidence 6655543222 11 123444443333332 12345555555555542 466666665555554421
Q ss_pred cCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCC
Q 002235 365 SGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN 408 (949)
Q Consensus 365 ~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~ 408 (949)
...+-+.+|-....+..+ ..+..++||..+....|
T Consensus 764 ------~lsviQsLi~VfahL~~t---~~~~~l~FL~Slp~~~g 798 (1005)
T KOG2274|consen 764 ------TLSVIQSLIMVFAHLVHT---DLDQLLNFLSSLPGPTG 798 (1005)
T ss_pred ------hHHHHHHHHHHHHHHhhC---CHHHHHHHHHhCCCCCC
Confidence 234445555554444432 33455666665444444
No 153
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.51 E-value=0.93 Score=46.93 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=57.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHH--HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEP--LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~--l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~ 169 (949)
..+.+-..+++..+|-.|++++..+....++.| .+|.+..+..|+++++|+.|...+..++. +.|+++.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e--K~~s~v~ 81 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE--KHESLVE 81 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH--HhHHHHH
Confidence 344556678999999999999999887777776 67899999999999999999999999998 7777654
No 154
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.83 E-value=30 Score=41.80 Aligned_cols=115 Identities=15% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHcc----CCC-hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh-
Q 002235 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSL----SSA-PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI- 313 (949)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l----~~~-~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~- 313 (949)
..+..+.+.++|..+..+|.-.+..+|+++ ++. ...++.-....+.-+.+++|+|+|..++..|..+.-...+.
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 355677888888777888888887888776 322 22233222223333457899999999999998765322111
Q ss_pred -H---HHHHH-hheeccCCCCHHHHHHHHHHHHhhcCC--CcHHHHHH
Q 002235 314 -M---VDLIM-DVLRALNSPNLDIRRKTLDIVLELITP--RNINEVVL 354 (949)
Q Consensus 314 -l---~~~~~-~il~~L~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~ 354 (949)
+ ...-+ -+....+|+|+.|...++.+|-.++.. +.|+-+++
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 1 11111 133346899999999999999998876 56655553
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=12 Score=42.03 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=62.5
Q ss_pred hccCCChHHHHHHHHHHHHHhcCCCCcccccch-----HHHHHHHHccCCChhHHHHHHHHHHhcchhh-H---------
Q 002235 139 NLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA-----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-A--------- 203 (949)
Q Consensus 139 ~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~-----~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-a--------- 203 (949)
.++|.++-||+.|+-.++.+.+ .+|.....+ ...+-..|..+.+..++..|+.+++.+-.+. +
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~q--NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQ--NNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 8899999999999999999999 777654332 2233344556666677788888877653332 1
Q ss_pred -HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchh
Q 002235 204 -INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE 239 (949)
Q Consensus 204 -i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~ 239 (949)
..-|..++.. +..+.-+|.+++-++..+...+++.
T Consensus 210 G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 210 GYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred CHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhh
Confidence 1123333332 2245667777777777776655443
No 156
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=84.52 E-value=91 Score=36.62 Aligned_cols=250 Identities=14% Similarity=0.100 Sum_probs=120.9
Q ss_pred cChhHHHHHHHHHHHhhhcCc-----hhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHccCCChHH---H-H-HHHHHHHH
Q 002235 217 WGELLQMVVLELIRKVCRTNK-----GEKGKYIKIIISLLNAPS-TAVIYECAGTLVSLSSAPTA---I-R-AAANTYSQ 285 (949)
Q Consensus 217 ~~p~~q~~il~ll~~~~~~~p-----~~~~~li~~L~~lL~s~s-~aV~~Eaa~~l~~l~~~~~~---l-~-~~a~~li~ 285 (949)
.+.+.+.....++..+....+ .....+.+.+...|++.+ ..-++-|++++..+-..+.. + + ..+..++.
T Consensus 113 ~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~ 192 (429)
T cd00256 113 QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVK 192 (429)
T ss_pred CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHH
Confidence 466778888888887754322 223345666777776543 33555555555444222111 0 0 12344555
Q ss_pred HHccCC-chHHHHHHHHHHHHHHhhChhhH-----HHHHHhheeccCC-CCHHHHHHHHHHHHhhcCCC--------cHH
Q 002235 286 LLLSQS-DNNVKLIVLDRLNELRSSHRDIM-----VDLIMDVLRALNS-PNLDIRRKTLDIVLELITPR--------NIN 350 (949)
Q Consensus 286 lll~~~-d~nvr~iaL~~L~~l~~~~p~~l-----~~~~~~il~~L~d-~d~~Ir~~aL~lL~~l~~~~--------Nv~ 350 (949)
++-... +..+.|-++-.+=.+.- ++... .+.+..+..++.+ +-.-|-|.++.++..+.+.. ...
T Consensus 193 ~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~ 271 (429)
T cd00256 193 LLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAAL 271 (429)
T ss_pred HHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 553333 45667766665544432 12111 0122223333333 23445566777777777743 111
Q ss_pred HHHH-HHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc---CcccHHHHH-HHHHHHHhCCCcccHHHHH-HHHHHHHH
Q 002235 351 EVVL-MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK---FPEVASTVV-HLLMDFLGDSNVASAIDVI-IFVREIIE 424 (949)
Q Consensus 351 ~Iv~-~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k---f~~~~~~~l-~~L~~lL~~~~~~v~~e~i-~~l~~ii~ 424 (949)
.++. .+.+.+..-....+ .|++....+-.--..+..+ +.. .+.|. +...+.|+-+..+..+..+ .-...+
T Consensus 272 ~mv~~~l~~~l~~L~~rk~-~DedL~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf-- 347 (429)
T cd00256 272 QMVQCKVLKTLQSLEQRKY-DDEDLTDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSPVHKSEKFWRENADRL-- 347 (429)
T ss_pred HHHHcChHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCCCCCCchHHHHHHHHH--
Confidence 2222 12221111111000 1344444333222223222 222 23333 3333444443333333333 112222
Q ss_pred hCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHH
Q 002235 425 MNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIAT 473 (949)
Q Consensus 425 ~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~ 473 (949)
.+-.-.++++|++.++.-.++.+.+.+++=+|||+...|.....++.
T Consensus 348 --~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~ 394 (429)
T cd00256 348 --NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQ 394 (429)
T ss_pred --HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHH
Confidence 22235689999999976677889999999999999988876555443
No 157
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=98 Score=37.00 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCc--ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccc-hHH
Q 002235 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNV--ASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIR-AAR 448 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~--~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~-~~~ 448 (949)
.+||..+++.+..++.-.. .+.++..+...++.++. ...+.++..++.++.+.+.-...++...++.+-... ..+
T Consensus 366 ~~fR~~v~dvl~Dv~~iig--s~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIG--SDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchh
Confidence 3566667776666664322 23556655555555332 244445677888887766555667777777664432 345
Q ss_pred HHHHHhhhcccCCCCCCcHHHHHHH
Q 002235 449 VCTCALWIIGEYCQSLSEVENGIAT 473 (949)
Q Consensus 449 v~~~~lwiLGEy~~~~~~~~~~~~~ 473 (949)
++...+-++|+|++..+..++.++.
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p~~le~ 468 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHPELLEP 468 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9999999999999988866555443
No 158
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=84.34 E-value=34 Score=35.66 Aligned_cols=199 Identities=12% Similarity=0.089 Sum_probs=112.0
Q ss_pred HhhcCCchhhHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHH
Q 002235 119 FLCRLNETEIIEPLIPSVLQN---LQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLML 195 (949)
Q Consensus 119 ~L~~I~~~el~~~l~~~I~~~---L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L 195 (949)
.|-.+.+|+....+...++.. +.=+.|-+|+-|-- +++-.. .. .++.++...+. .+.....+..|+.++
T Consensus 4 ~L~~~~d~~~a~~~~~~~~~~~~~~GV~~p~lr~lak~-~~~~~~--~~----~~~~~l~~~L~-~~~~~E~~~la~~il 75 (213)
T PF08713_consen 4 ELEALADPKYAKFMQRYMKEKDPFLGVRTPDLRKLAKD-IYKELK--LS----EELYELADELW-ESGYREERYLALLIL 75 (213)
T ss_dssp HHHHC--HHHHHHHHHHTTTSSB-----HHHHHHHHHH-HHHHHC--TS----HHHHHHHHHHH-CSSCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhCCCcccccCcCcHHHHHHHHH-HHhhcc--cc----hHHHHHHHHHc-CCchHHHHHHHHHHh
Confidence 455566777777666665521 22244444443322 222222 11 33446666655 566677788888887
Q ss_pred HhcchhhH---HHHHHHHHhhcCccChhHHHHHH--HHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC
Q 002235 196 FTCDQDRA---INYLLTHVDRVSEWGELLQMVVL--ELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS 270 (949)
Q Consensus 196 ~~i~~~~a---i~~L~~~l~~i~~~~p~~q~~il--~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~ 270 (949)
....+... +..+... ++..+.|..+-.+ +++..+.... ..+.+.+..++.|.+.-++..++-+++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~---~~~~~~W~~~D~~~~~~~~~~~~~~----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~ 148 (213)
T PF08713_consen 76 DKRRKKLTEEDLELLEKW---LPDIDNWATCDSLCSKLLGPLLKKH----PEALELLEKWAKSDNEWVRRAAIVMLLRYI 148 (213)
T ss_dssp HHCGGG--HHHHHHHHHC---CCCCCCHHHHHHHTHHHHHHHHHHH----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHG
T ss_pred HHHhhhhhHHHHHHHHHH---hccCCcchhhhHHHHHHHHHHHHhh----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 65443321 3333333 3456677666555 5555553211 457789999999999988888877766553
Q ss_pred CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHH
Q 002235 271 SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTL 337 (949)
Q Consensus 271 ~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL 337 (949)
.. .... ..-.++...+.+++.-++..+--.|..+...+|+.+.+++..-. ..-++.+.+.|+
T Consensus 149 ~~-~~~~-~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~---~~~~~~~~r~Ai 210 (213)
T PF08713_consen 149 RK-EDFD-ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS---DRLSRWTLRYAI 210 (213)
T ss_dssp GG-CHHH-HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS--------HHHHHHHC
T ss_pred Hh-cCHH-HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc---ccCchhHHHHHH
Confidence 32 1221 22333445567888899999999999999999998887655511 113445555554
No 159
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.34 E-value=39 Score=39.40 Aligned_cols=153 Identities=10% Similarity=0.179 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHhhC-----hhhHHHHHHhheeccCC-CCHHHHHHHHHHHHhhcCCC------cHHHHHHHHHHHH
Q 002235 293 NNVKLIVLDRLNELRSSH-----RDIMVDLIMDVLRALNS-PNLDIRRKTLDIVLELITPR------NINEVVLMLKKEV 360 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~-----p~~l~~~~~~il~~L~d-~d~~Ir~~aL~lL~~l~~~~------Nv~~Iv~~L~kel 360 (949)
..-+-.|+..|..+.... .+.|......++.+|+| .+..+|+.||.+|.++++.. ..+..+..++
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L--- 377 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL--- 377 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH---
Confidence 344667888888877654 34455555667778888 89999999999999998754 3333333332
Q ss_pred HHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHH----
Q 002235 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITR---- 436 (949)
Q Consensus 361 ~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~---- 436 (949)
.... |..++..+.+.+...++...+-+ ..++..+..++-.........++..+..+++..+. +.....
T Consensus 378 eaa~----ds~~~v~~~Aeed~~~~las~~P--~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~--EeL~~ll~di 449 (516)
T KOG2956|consen 378 EAAK----DSQDEVMRVAEEDCLTTLASHLP--LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSA--EELLNLLPDI 449 (516)
T ss_pred HHHh----CCchhHHHHHHHHHHHHHHhhCc--hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH--HHHHHhhhhh
Confidence 2222 33456666666554433333322 25666677666665555555666677777765432 222211
Q ss_pred ---HHHHhcccchHHHHHHHhhhc
Q 002235 437 ---LLDNFYQIRAARVCTCALWII 457 (949)
Q Consensus 437 ---L~~~l~~i~~~~v~~~~lwiL 457 (949)
+++..++ .++.++..++++|
T Consensus 450 aP~~iqay~S-~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 450 APCVIQAYDS-TSSTVRKTAVFCL 472 (516)
T ss_pred hhHHHHHhcC-chHHhhhhHHHhH
Confidence 2222222 2456777777766
No 160
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=15 Score=41.28 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=74.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHH-
Q 002235 245 KIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDL- 317 (949)
Q Consensus 245 ~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~- 317 (949)
..+...++++++.|+--||++|.++.. +|..... +...++..|.++.+..+|--||-.+..+...+|.....+
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445558899999999999999999854 4533221 346788888777777788999999999998877654332
Q ss_pred ----HHhheeccCC--CCHHHHHHHHHHHHhhcCCCcH
Q 002235 318 ----IMDVLRALNS--PNLDIRRKTLDIVLELITPRNI 349 (949)
Q Consensus 318 ----~~~il~~L~d--~d~~Ir~~aL~lL~~l~~~~Nv 349 (949)
..-+..++.+ .+.-.+++++.++..+..+...
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 1223445665 5667778899988877655433
No 161
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.69 E-value=14 Score=45.69 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCC---c---hhhHHHHHHHHHHh-ccCCChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLN---E---TEIIEPLIPSVLQN-LQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~---~---~el~~~l~~~I~~~-L~d~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
..+|++++=..+|+...|+.++-.++.+. . .+....+...|.+. -.|.++.|||+|+.-+..+..- .+.++.
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~-tg~dlL 925 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG-TGEDLL 925 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc-cchhhH
Confidence 56788888888998888988877766543 1 22333333333333 3789999999999988887662 344444
Q ss_pred c
Q 002235 169 V 169 (949)
Q Consensus 169 ~ 169 (949)
|
T Consensus 926 p 926 (982)
T KOG4653|consen 926 P 926 (982)
T ss_pred H
Confidence 3
No 162
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=83.42 E-value=13 Score=44.87 Aligned_cols=145 Identities=20% Similarity=0.268 Sum_probs=98.4
Q ss_pred cCCCCcchhHHHHHHHHHHhhcC---CCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC-------chhhHHHH
Q 002235 63 LPSEDHTIQKLLLLYLEIIDKTD---AKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPL 132 (949)
Q Consensus 63 ~~s~d~~lKrL~YL~l~~~~~~~---~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~-------~~el~~~l 132 (949)
.+.+|+...+-+.+-+..++..= ..| +.. .=+..-+.+=+.+|.-+|.+.+|-++|++. +.-+.-..
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTG-LKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcC-Ccc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 45788888888777665554210 112 111 112233344457899999999999999974 44455556
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc-----chH-HHHHHHHccCCChhHHHHHHHHHHhcc--hhhHH
Q 002235 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAP-EMIEKVLSTEQDPSAKRNAFLMLFTCD--QDRAI 204 (949)
Q Consensus 133 ~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~-----~~~-e~l~~~L~~d~d~~v~~~Al~~L~~i~--~~~ai 204 (949)
+..+.+.+.++.+.+|++++-.++|+.- .+.+... +++ ..+-. +.+|+|+.|+-.+|.+|..+- ..+.+
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f--~~de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMF--NCDEEEKFQLLAKIPANLILD-LINDPDWAVQEQCFQLLRNLTCNSRKSV 539 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHh--cchHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHHHHHHHHhhcCcHHHH
Confidence 7788889999999999999999999766 4443332 222 34444 348999999999999998753 34678
Q ss_pred HHHHHHHhh
Q 002235 205 NYLLTHVDR 213 (949)
Q Consensus 205 ~~L~~~l~~ 213 (949)
+|+.+.+..
T Consensus 540 dfll~~~~~ 548 (678)
T KOG1293|consen 540 DFLLEKFKD 548 (678)
T ss_pred HHHHHhhhH
Confidence 888766543
No 163
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=82.62 E-value=19 Score=38.93 Aligned_cols=99 Identities=14% Similarity=0.242 Sum_probs=70.6
Q ss_pred cccccchHHHHHHHH------ccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcC-----ccChhHHHHHHHHHHHhh
Q 002235 165 EQLLVDAPEMIEKVL------STEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVS-----EWGELLQMVVLELIRKVC 233 (949)
Q Consensus 165 ~~li~~~~e~l~~~L------~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~-----~~~p~~q~~il~ll~~~~ 233 (949)
..++|....+++++. ..+.+.....+|+.+|.+.+..+|.+.|++++++-+ .+++|.---+-+++..++
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~ 109 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG 109 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh
Confidence 345565555555543 133344556799999999999999999999886422 367788888888888888
Q ss_pred hcCchhHHHHHHHHHHHHcCCc--hHHHHHHHHHHHccC
Q 002235 234 RTNKGEKGKYIKIIISLLNAPS--TAVIYECAGTLVSLS 270 (949)
Q Consensus 234 ~~~p~~~~~li~~L~~lL~s~s--~aV~~Eaa~~l~~l~ 270 (949)
..++ +.|..++.+.+ .-|+..|.+++..+.
T Consensus 110 ~G~~-------~~L~~li~~~~~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 110 DGDI-------EPLKELIEDPDADEYVRMAAISALAFLV 141 (249)
T ss_pred CCCH-------HHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7765 55666677664 458888888888774
No 164
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.58 E-value=24 Score=39.57 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhc-chhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHH
Q 002235 186 SAKRNAFLMLFTC-DQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAG 264 (949)
Q Consensus 186 ~v~~~Al~~L~~i-~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~ 264 (949)
.+...-+.+|..+ ..++.++|+..++.++-..+|- . .+++..+...++.. .+..+..++.+.+..+...|++
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-~---~~~~~~~~~~~~~~---~~~~fl~ll~~~D~~i~~~a~~ 127 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-R---VELFLELAKQDDSD---PYSPFLKLLDRNDSFIQLKAAF 127 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSS-S---HHHHHHHHH-TTH-----HHHHHHH-S-SSHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-H---HHHHHHhcccccch---hHHHHHHHhcCCCHHHHHHHHH
Confidence 4444445566666 5555677777666654333331 1 22233333222221 3444555888888889999998
Q ss_pred HHHccCCC--h---HHHHHHHHHHHHHHc---cCCchHHHHHHHHHHHHHHh
Q 002235 265 TLVSLSSA--P---TAIRAAANTYSQLLL---SQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 265 ~l~~l~~~--~---~~l~~~a~~li~lll---~~~d~nvr~iaL~~L~~l~~ 308 (949)
.+..+... . .........+++.+. ++++.++.+++++.|..+..
T Consensus 128 iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 88776321 1 111234555555543 34566788999999998875
No 165
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.17 E-value=25 Score=41.71 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=95.3
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHH--HhhChhhHHHHHHhheec-cCCCCHHHHHHHHHHHHhhc--CCCcHHHHH
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNEL--RSSHRDIMVDLIMDVLRA-LNSPNLDIRRKTLDIVLELI--TPRNINEVV 353 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l--~~~~p~~l~~~~~~il~~-L~d~d~~Ir~~aL~lL~~l~--~~~Nv~~Iv 353 (949)
.+.-++.-++.+.|+-+||.+.-.+..- ...+..++.. ++.. .+|.|.+|||.|.-.|.-+| +..-+...|
T Consensus 516 ~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~----lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tv 591 (926)
T COG5116 516 MADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVST----LLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTV 591 (926)
T ss_pred HHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhh----hheeecccCchHHHHHHHHheeeeEecCcchhhHHH
Confidence 4455677777888999999877666432 1223344443 3444 78888899998876665544 334445555
Q ss_pred HHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHH-HHhCcccH--
Q 002235 354 LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREI-IEMNPKLR-- 430 (949)
Q Consensus 354 ~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~i-i~~~p~~~-- 430 (949)
+-|. . .-+..+|--..-++|..|.- .-...++++|-.+..|..+++++.+...+.-| ++.+|++-
T Consensus 592 elLs----~------shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 592 ELLS----E------SHNFHVRAGVAVALGIACAG--TGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred HHhh----h------ccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4332 1 12567888888888866543 23357788888888899999998876655554 45566653
Q ss_pred -HHHHHHHHHHhcc
Q 002235 431 -VSIITRLLDNFYQ 443 (949)
Q Consensus 431 -~~~l~~L~~~l~~ 443 (949)
..|.+++...|-+
T Consensus 660 v~~I~k~f~~vI~~ 673 (926)
T COG5116 660 VKRIIKKFNRVIVD 673 (926)
T ss_pred HHHHHHHHHHHHhh
Confidence 3567777776655
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=1.5e+02 Score=37.09 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=102.7
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCccccc--chHHHHHHHHcc-CCChhHHHHHHHHHHhcchhh-----------HH--
Q 002235 141 QHRHPYIRRNAILAVMAIYKLPQGEQLLV--DAPEMIEKVLST-EQDPSAKRNAFLMLFTCDQDR-----------AI-- 204 (949)
Q Consensus 141 ~d~~pyVRk~A~lal~ki~~l~~~~~li~--~~~e~l~~~L~~-d~d~~v~~~Al~~L~~i~~~~-----------ai-- 204 (949)
...-+-=||.|+.++-.+.+ ++...+- ....+|.. |.. -.|+-.+..|+-.++-+-.++ +-
T Consensus 33 ssTL~eDRR~A~rgLKa~sr--kYR~~Vga~Gmk~li~v-L~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSR--KYREEVGAQGMKPLIQV-LQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred hccchhhHHHHHHHHHHHHH--HHHHHHHHcccHHHHHH-HhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 33455667888887766666 4443332 12345544 433 356767777776655442111 00
Q ss_pred ------------HHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHH-------HHHHHHHHcCCchHHHHHHHHH
Q 002235 205 ------------NYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY-------IKIIISLLNAPSTAVIYECAGT 265 (949)
Q Consensus 205 ------------~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~l-------i~~L~~lL~s~s~aV~~Eaa~~ 265 (949)
..+.-++..+..++=......++++..+.+.-|.+.++. +..+..+|..+...|+-+++-.
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl 189 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILL 189 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence 011111222233343445566666666655444443332 2455566677777788888888
Q ss_pred HHccCCChHHHHHH------HHHHHHHHccCCchHHHHHHHHHHH---HHHh---hChhhHHH--HHHhheecc-----C
Q 002235 266 LVSLSSAPTAIRAA------ANTYSQLLLSQSDNNVKLIVLDRLN---ELRS---SHRDIMVD--LIMDVLRAL-----N 326 (949)
Q Consensus 266 l~~l~~~~~~l~~~------a~~li~lll~~~d~nvr~iaL~~L~---~l~~---~~p~~l~~--~~~~il~~L-----~ 326 (949)
|+.+..+.+.++.+ -..++.++-.++...=-.++.++|. .|.+ .+-..|.+ |+..+..+| .
T Consensus 190 L~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 190 LSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFG 269 (970)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccccc
Confidence 88886554344332 2334444433321111123333333 2322 23334432 333333222 2
Q ss_pred CC------CHHH--HHHHHHHHHhhcCCCcHHHHHH
Q 002235 327 SP------NLDI--RRKTLDIVLELITPRNINEVVL 354 (949)
Q Consensus 327 d~------d~~I--r~~aL~lL~~l~~~~Nv~~Iv~ 354 (949)
|+ +.-| -..+|.++..++++.|-..+..
T Consensus 270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~ 305 (970)
T KOG0946|consen 270 DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITH 305 (970)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 21 1111 2357778888888887766553
No 167
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.86 E-value=7.7 Score=45.68 Aligned_cols=177 Identities=12% Similarity=0.202 Sum_probs=112.3
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHH-HhhcCCCCCCCchHHH
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEI-IDKTDAKGRVLPEMIL 96 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~-~~~~~~d~~l~~e~iL 96 (949)
-+.++++.-......+-+.++--=+.++..|. .+++-+.|+-+..++|..+|--|-+.+-. |.-+ |++ =
T Consensus 482 ai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~add~I~ell~d~ds~lRy~G~fs~alAy~GT---gn~-----~ 551 (926)
T COG5116 482 AIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEMADDYINELLYDKDSILRYNGVFSLALAYVGT---GNL-----G 551 (926)
T ss_pred HHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcC---Ccc-----h
Confidence 44566655555555555567766666677674 35566677778889999998877665543 3323 331 1
Q ss_pred HHHHHH-hhcCCCCHHHHHHHHHHhhcCC--chhhHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcCCCCcccccchH
Q 002235 97 ICQNLR-NNLQHPNEYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP 172 (949)
Q Consensus 97 v~NsL~-KDL~~~N~~iR~~ALr~L~~I~--~~el~~~l~~~I~~~L-~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~ 172 (949)
++..+. -..++.|.-||-.|.-+|+-+. ++.++ +...+.| .+.|++||-..+++++-...- .+. ....
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l----v~tvelLs~shN~hVR~g~AvaLGiacag-~G~---~~a~ 623 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL----VGTVELLSESHNFHVRAGVAVALGIACAG-TGD---KVAT 623 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecCcchh----hHHHHHhhhccchhhhhhhHHHhhhhhcC-Ccc---HHHH
Confidence 223333 2357889999999999998775 44443 3334444 557999999999988865551 222 3356
Q ss_pred HHHHHHHccCCChhHHHHHHHHHH----hcchhh--HHHHHHHHHhh
Q 002235 173 EMIEKVLSTEQDPSAKRNAFLMLF----TCDQDR--AINYLLTHVDR 213 (949)
Q Consensus 173 e~l~~~L~~d~d~~v~~~Al~~L~----~i~~~~--ai~~L~~~l~~ 213 (949)
++++.+ ..|.+..|+..|..++. +++++. .+..+.+.+++
T Consensus 624 diL~~L-~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~ 669 (926)
T COG5116 624 DILEAL-MYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNR 669 (926)
T ss_pred HHHHHH-hhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHH
Confidence 889885 58999999998887654 444442 24445555554
No 168
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=81.77 E-value=85 Score=34.86 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCC
Q 002235 328 PNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDS 407 (949)
Q Consensus 328 ~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~ 407 (949)
-++.+|..++....+-++.+.++.+.. .+.+ +.+.+.|..++.+++. .+- ++.+.-+++++-++
T Consensus 167 i~~dlr~~v~~~~~~~g~~~~~~~l~~----~~~~------~~~~~~k~~~l~aLa~--~~d----~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 167 IPPDLRWAVYCAGVRNGDEEEWDFLWE----LYKN------STSPEEKRRLLSALAC--SPD----PELLKRLLDLLLSN 230 (324)
T ss_dssp S-HHHHHHHHHHHTTS--HHHHHHHHH----HHHT------TSTHHHHHHHHHHHTT---S-----HHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhhHhhHHHHHH----HHhc------cCCHHHHHHHHHhhhc--cCC----HHHHHHHHHHHcCC
Confidence 377899999998888888776666664 3332 3468899999999852 222 34455555555554
Q ss_pred CcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhccc
Q 002235 408 NVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQI 444 (949)
Q Consensus 408 ~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i 444 (949)
+..-.+++...+..+...+|..+..+..-+.+.++.+
T Consensus 231 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i 267 (324)
T PF11838_consen 231 DKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAI 267 (324)
T ss_dssp STS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHH
T ss_pred cccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Confidence 3344455666666665577877777777777766554
No 169
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.22 E-value=4.2 Score=44.70 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=95.5
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCC-CCC----CchhHHHHHhhcCCCCcchhHHHHHHHHHHh-hcCCCCCCC
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNG-ETL----PQLFITIVRYVLPSEDHTIQKLLLLYLEIID-KTDAKGRVL 91 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G-~d~----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~-~~~~d~~l~ 91 (949)
.+.+.-+.|.+.+-..||++|.-|-.+..-. +.+ ....+.|++.+ -+....+=|...+.+..+- .++ ..+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln--~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLN--NSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4556666788888889998876555433222 222 34555666644 4555566676666665532 122 1222
Q ss_pred chH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 92 PEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 92 ~e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
+++ .+++--+.|--+ .|-|||.-|.++|-.+..+-.-+.+.+.+..++.|.+|.||++|++|..+...
T Consensus 166 ~~ld~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 334 566665555443 47899999999999999999889999999999999999999999998876554
No 170
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.59 E-value=41 Score=42.51 Aligned_cols=176 Identities=13% Similarity=0.181 Sum_probs=125.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhCCC-CC----CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHH
Q 002235 21 EIKEALEGNDVPAKVDAMKKAIMLLLNGE-TL----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMI 95 (949)
Q Consensus 21 eir~~L~s~~~~~k~~aL~kli~l~~~G~-d~----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~i 95 (949)
.+...+.+++-+++.+++..++-.+..-. .. ..++.-.++-..-..|...-.+.-.++..+++.-..+- ++-..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~ 335 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAK 335 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHH
Confidence 46677888899999999999998777543 22 33444444433334555566666666777765544331 23357
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-----
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD----- 170 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~----- 170 (949)
.+.+.|..-+......+|-.++.++=.+..---+..+.+.|...+.|++|-+|--....+.+.++. ..|...++
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~-~~~~~~~~~t~~~ 414 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK-LGPKTVEKETVKT 414 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh-cCCcCcchhhHHH
Confidence 888999999999999999999888888887777888999999999999999999988888888873 23233332
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002235 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 171 ~~e~l~~~L~~d~d~~v~~~Al~~L~~i~ 199 (949)
..+.+.. ..+|.|.-|+-+|+.++..+.
T Consensus 415 l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 415 LVPHLIK-HINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HhHHHhh-hccCCcHHHHHHHHHHHHHHH
Confidence 2222323 247999999998887766543
No 171
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=79.77 E-value=41 Score=47.21 Aligned_cols=265 Identities=16% Similarity=0.147 Sum_probs=142.2
Q ss_pred HHHHHHHhhcCCch--hhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc--------c--ccchHHHHHHHHc
Q 002235 113 RGVTLRFLCRLNET--EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--------L--LVDAPEMIEKVLS 180 (949)
Q Consensus 113 R~~ALr~L~~I~~~--el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~--------l--i~~~~e~l~~~L~ 180 (949)
--.|.++++.+... .+...+-..+...+++-++-+|++|+.++..+++ ..+. + +....+.++.+-.
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~--~~~~~~~~~~~~~~~v~~vl~~ll~~ai 538 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLK--YDIICSQTSPHALQVVKEVLSALLTVAI 538 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhhhhcccchHHHHHHHHHHHHHHHhc
Confidence 44689999998754 4444455556778889999999999999999988 4443 2 1111222223224
Q ss_pred cCCChhHHHHHHHHHHh-----cchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCch-----hHHHHHHHHHHH
Q 002235 181 TEQDPSAKRNAFLMLFT-----CDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG-----EKGKYIKIIISL 250 (949)
Q Consensus 181 ~d~d~~v~~~Al~~L~~-----i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~-----~~~~li~~L~~l 250 (949)
.|+||..+...+..+.+ .++.+.++.+...+. ...=..|......+++++..+|. .+...+..+..+
T Consensus 539 a~~~~~i~~~v~~~l~~~~~~~laQ~~~lr~~~~al~---~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l 615 (2341)
T KOG0891|consen 539 ADTDPDIRIRVLSSLNERFDAQLAQPDLLRLLFIALH---DENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTEL 615 (2341)
T ss_pred cCCCcchhhhHHhhhccchhhhhcCchhHHHHHHHhh---hhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchh
Confidence 78888877666665551 122221222211111 11111355666666666665553 333344444444
Q ss_pred HcCCchHHHHHHHHHHHccCC-ChHHHHH----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH----HHHHHhh
Q 002235 251 LNAPSTAVIYECAGTLVSLSS-APTAIRA----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM----VDLIMDV 321 (949)
Q Consensus 251 L~s~s~aV~~Eaa~~l~~l~~-~~~~l~~----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l----~~~~~~i 321 (949)
..+...-+.-+++.-+..+-. .+..++. ....++..+ .++++-+--.++..+.+|+...-..+ ..+...|
T Consensus 616 ~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~-~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~ 694 (2341)
T KOG0891|consen 616 EFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKL-QDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLI 694 (2341)
T ss_pred hhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHH-hccchhhHHHHHHHHHHHHHhccchhhhccchHHHHH
Confidence 444434344445554443321 1111111 111222222 34555667778888888876543222 3455555
Q ss_pred eeccCCCCHHH-HHHHHHHHHhhcCCCcH--------HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC
Q 002235 322 LRALNSPNLDI-RRKTLDIVLELITPRNI--------NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF 389 (949)
Q Consensus 322 l~~L~d~d~~I-r~~aL~lL~~l~~~~Nv--------~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf 389 (949)
...+.+..... |+-++..+.++...+.+ ..+++.|...+.. +...-.|+.+++.++.++..-
T Consensus 695 ~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~t------e~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 695 IKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKT------EQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred HHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhH------hhhhHHHHHHHHHhhhhcccc
Confidence 55555554444 45577777777766543 2344433333222 234568888888888777543
No 172
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.51 E-value=11 Score=38.07 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhhee
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR 323 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~ 323 (949)
.+..+++++-. +...-.+++.|..+...||..|.+|...+..
T Consensus 117 ~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~ 158 (165)
T PF08167_consen 117 FIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIES 158 (165)
T ss_pred HHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHH
Confidence 44555555421 4577789999999999999999998777653
No 173
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=78.89 E-value=1.3e+02 Score=34.76 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh---hHHHH--HHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD---IMVDL--IMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~---~l~~~--~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
+...++.+|-+++||-+-.+|..-+.+..+.+|. ++..+ ...++++++++|+.||..||-.+.++.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5566778887888999999999999999999996 34332 345788999999999999998887654
No 174
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.09 E-value=26 Score=40.82 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcccccchHH-HHHHHHc--cCCChhHHHHHHH----HHHhcch
Q 002235 129 IEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLLVDAPE-MIEKVLS--TEQDPSAKRNAFL----MLFTCDQ 200 (949)
Q Consensus 129 ~~~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~li~~~~e-~l~~~L~--~d~d~~v~~~Al~----~L~~i~~ 200 (949)
...+...+.+.|.| +++..|+-|+-.+.++.. ..|....+..+ .+.++|. .|++..|.+.|-- .|..+.|
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~--~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLT--NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH--hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 33455677788888 899999999999999999 77877766543 3445442 5666677766553 3444455
Q ss_pred hhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCch-h----HHHHHHHHHHHHcCCchHHHHHHHHHHHcc
Q 002235 201 DRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG-E----KGKYIKIIISLLNAPSTAVIYECAGTLVSL 269 (949)
Q Consensus 201 ~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~-~----~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l 269 (949)
..++.-+..++- + -++---+.+|+++.+++..=+. + ...+.+++.+--.|.++.|+-+|+-+|+.+
T Consensus 405 ~~~I~~i~~~Il--t-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 405 LQCIVNISPLIL--T-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hhHHHHHhhHHh--c-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 544444443332 1 2333356778888887654222 2 244556666667788888999998888776
No 175
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=77.79 E-value=14 Score=46.19 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHcc---CCC--hHHHHHHHHHHHHHHccCCchH---HHHHHHHHHHHHHhhChh-
Q 002235 242 KYIKIIISLLNAPSTAVIYECAGTLVSL---SSA--PTAIRAAANTYSQLLLSQSDNN---VKLIVLDRLNELRSSHRD- 312 (949)
Q Consensus 242 ~li~~L~~lL~s~s~aV~~Eaa~~l~~l---~~~--~~~l~~~a~~li~lll~~~d~n---vr~iaL~~L~~l~~~~p~- 312 (949)
.+++.|.+.|.=.+..|+.++-++|-.+ ++. ++.+...+..++.+ -+++|+| +|..||+.|..|..+-|.
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 4556666667667777766666665332 211 23333333333332 2345543 799999999999885442
Q ss_pred hHHHH----HHhheeccCCCCHHHHHHHHHH
Q 002235 313 IMVDL----IMDVLRALNSPNLDIRRKTLDI 339 (949)
Q Consensus 313 ~l~~~----~~~il~~L~d~d~~Ir~~aL~l 339 (949)
.+.++ +..+..+|+|+-+-||+.|.+.
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 22222 2336778999999999999875
No 176
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=30 Score=41.85 Aligned_cols=180 Identities=14% Similarity=0.171 Sum_probs=109.8
Q ss_pred HHHhCCC-CCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCC--chH-H-HHHH-HHHhhcCCCCHHHHHHH
Q 002235 43 MLLLNGE-TLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL--PEM-I-LICQ-NLRNNLQHPNEYIRGVT 116 (949)
Q Consensus 43 ~l~~~G~-d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~--~e~-i-Lv~N-sL~KDL~~~N~~iR~~A 116 (949)
.+..+|. +....+...++.+ ...++|..=+.+..|+ +.-.|+.. +.. + =.|. ..-++=.+..+-+-|.|
T Consensus 554 ~llflgkqe~~d~~~e~~~~i----~~~~~~~~~~lv~~ca-YaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiA 628 (878)
T KOG2005|consen 554 ALLFLGKQESVDAVVETIKAI----EGPIRKHESILVKSCA-YAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIA 628 (878)
T ss_pred HHHHhcccchHHHHHHHHHHh----hhHHHHHHHHHHHHhh-ccccCceEEechhhhhhhcCCCccchhhhccchhhhhh
Confidence 3444443 3344555666522 4567777766666654 33344320 000 0 0111 11111122335678889
Q ss_pred HHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHH
Q 002235 117 LRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLF 196 (949)
Q Consensus 117 Lr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~ 196 (949)
+-+|+.=...+| ..+.+-..+.-.+|.+||+.=+|+.-++. .+|.+ ...+.+.++. .|.|+.|..+|+.++.
T Consensus 629 liAMgeeig~eM---~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~--~vlDtLsk~s-hd~D~eva~naIfamG 700 (878)
T KOG2005|consen 629 LIAMGEEIGSEM---VLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQV--NVLDTLSKFS-HDGDLEVAMNAIFAMG 700 (878)
T ss_pred hhhhhhhhhhHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcc--hHHHHHHHhc-cCcchHHHHHHHHHhc
Confidence 988876444444 46777788888999999999999998888 77765 3568888864 9999999999999999
Q ss_pred hcchhhHHHHHHHHHhhc-----CccChhHHHHHHHHHHHhhhc
Q 002235 197 TCDQDRAINYLLTHVDRV-----SEWGELLQMVVLELIRKVCRT 235 (949)
Q Consensus 197 ~i~~~~ai~~L~~~l~~i-----~~~~p~~q~~il~ll~~~~~~ 235 (949)
-|.....-..|.++++++ .+.+-++-+.|.+-+..+.+.
T Consensus 701 LiGAGTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 701 LIGAGTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred cccCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence 887553233344555443 234555556666666665543
No 177
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=1.4e+02 Score=33.74 Aligned_cols=304 Identities=15% Similarity=0.196 Sum_probs=154.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-hHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEMI 175 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~-~~e~l 175 (949)
=+.++.+-|.+ +--.++|-|++..=... .+.++. ..+.-+.++-.|-++++-++.++.. ..|++..- .+.++
T Consensus 78 E~s~ll~~l~d--~ck~~~A~r~la~~~ga--~~~~it-~~~la~~~~~~~l~ksL~al~~lt~--~qpdl~da~g~~vv 150 (461)
T KOG4199|consen 78 ETTELLEQLAD--ECKKSLAHRVLAGKNGA--HDALIT-LLELAESPNESVLKKSLEAINSLTH--KQPDLFDAEAMAVV 150 (461)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHhccCCC--cchhhh-HHHHhhCCchhHHHHHHHHHHHhhc--CCcchhccccHHHH
Confidence 35667777774 77788999998753321 122232 3337778899999999999999999 88887753 35666
Q ss_pred HHHHcc-CCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhh-hcC-chhHHHHHHHHHHHHc
Q 002235 176 EKVLST-EQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVC-RTN-KGEKGKYIKIIISLLN 252 (949)
Q Consensus 176 ~~~L~~-d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~-~~~-p~~~~~li~~L~~lL~ 252 (949)
-++|.. -.+..+....+..+..-+ + .+..-+ -.++-..+++++.... +.. .+..+.++..+.-++.
T Consensus 151 v~lL~~~~~~~dlt~~~~~~v~~Ac----~--~hE~nr-----Q~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 151 LKLLALKVESEEVTLLTLQWLQKAC----I--MHEVNR-----QLFMELKILELILQVLNREGKTRTVRELYDAIRALLT 219 (461)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHH----H--HhHHHH-----HHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC
Confidence 565521 112223323332221110 0 000101 1233344444443221 111 1122333333333333
Q ss_pred CCchHHH----HHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHH-----HHHhhee
Q 002235 253 APSTAVI----YECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD-----LIMDVLR 323 (949)
Q Consensus 253 s~s~aV~----~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~-----~~~~il~ 323 (949)
..+--|. ++-|++|.... .+..++..+-..-||++---..-.|..|+-++ ++.+. =...+++
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~--------~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~ 290 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEG--------ILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLR 290 (461)
T ss_pred CCceeeecchhhHHHHHHHHhh--------hHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHH
Confidence 3322222 22233332221 12223333333334565555555555554332 11111 2344677
Q ss_pred ccCCC----CHHHHHHHHHHHHhhcCCCcHHH-HHH-----HHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH
Q 002235 324 ALNSP----NLDIRRKTLDIVLELITPRNINE-VVL-----MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA 393 (949)
Q Consensus 324 ~L~d~----d~~Ir~~aL~lL~~l~~~~Nv~~-Iv~-----~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~ 393 (949)
|++|. +++..+.++.+|.+++..+.++. ||+ .+..-+.++ ..++.+-+++.-.|..+|.+-|+.+
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-----~~~p~Vi~~~~a~i~~l~LR~pdhs 365 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-----SDDPLVIQEVMAIISILCLRSPDHS 365 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-----CCChHHHHHHHHHHHHHHhcCcchH
Confidence 88774 34566889999999987776654 221 122112223 2367888899999999999999876
Q ss_pred HHHHH-----HHHHHHhCCC--cccHHHHHHHHHHHHHhCcccHHH
Q 002235 394 STVVH-----LLMDFLGDSN--VASAIDVIIFVREIIEMNPKLRVS 432 (949)
Q Consensus 394 ~~~l~-----~L~~lL~~~~--~~v~~e~i~~l~~ii~~~p~~~~~ 432 (949)
...++ ..++-++-.. ..+...+...||+++.+..+.+..
T Consensus 366 a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~ 411 (461)
T KOG4199|consen 366 AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTI 411 (461)
T ss_pred HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 65543 2333333221 113334556677776665554443
No 178
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.75 E-value=14 Score=40.77 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC---ch---hhHHHHHHHHHHhccCC
Q 002235 70 IQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ET---EIIEPLIPSVLQNLQHR 143 (949)
Q Consensus 70 lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~---~~---el~~~l~~~I~~~L~d~ 143 (949)
.-...|+.-+.+..++. +|+ +.+...+-|.+.+=....-+|.++.++. .. .++..++..|.+.+...
T Consensus 69 ~~~~e~~~sk~l~~fd~-----p~~--al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl 141 (334)
T KOG2933|consen 69 IHSVEYIVSKNLSPFDD-----PEA--ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL 141 (334)
T ss_pred cccHHHhhhcccCccCc-----HHH--HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh
Confidence 34677888888766652 554 4477777788877766666666665442 22 23344667778888999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 002235 144 HPYIRRNAILAVMAIYK 160 (949)
Q Consensus 144 ~pyVRk~A~lal~ki~~ 160 (949)
.+-|.|+|++++.-||.
T Consensus 142 RS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 142 RSAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999998
No 179
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=75.60 E-value=1.7e+02 Score=34.24 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHH--HhHccCcccHHHHHHHHHHHHhCCC-----ccc
Q 002235 339 IVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH--SCAIKFPEVASTVVHLLMDFLGDSN-----VAS 411 (949)
Q Consensus 339 lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~--~la~kf~~~~~~~l~~L~~lL~~~~-----~~v 411 (949)
-++..+.+.....++..|.+.+.+.+++ ....+...++.-.. .+...+......++..+..-|.... ..+
T Consensus 281 ~il~~~~~~~f~~i~~~lf~~la~ci~S---~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 281 EILEVLPPEEFQKIMVPLFKRLAKCISS---PHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHTS---SSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344455566666666677777766652 22222222222111 1111123445677777877776532 235
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhh
Q 002235 412 AIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALW 455 (949)
Q Consensus 412 ~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lw 455 (949)
..-+..+++-+.+.+|++.+.......+.-..-...+..+.--|
T Consensus 358 r~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~~~~r~~~W 401 (409)
T PF01603_consen 358 RNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAREKKRKKKW 401 (409)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788888888888776666555443332222334555555
No 180
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.53 E-value=3.2 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCC
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN 124 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~ 124 (949)
.+.+.+-++||++.||-.|.++|+.|.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 367788899999999999999998753
No 181
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=74.09 E-value=2.6e+02 Score=35.60 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=108.5
Q ss_pred HHHHHHH-cCCchHHHHHHHHHHHccCCC----hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHH
Q 002235 245 KIIISLL-NAPSTAVIYECAGTLVSLSSA----PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIM 319 (949)
Q Consensus 245 ~~L~~lL-~s~s~aV~~Eaa~~l~~l~~~----~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~ 319 (949)
..+...| .+..|....-+..++...+.. ++.+.......+..+..+..+-+|..+++++..... ++++++...
T Consensus 452 ~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p 529 (1005)
T KOG2274|consen 452 IMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQP 529 (1005)
T ss_pred HHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccch
Confidence 3333333 344566555555555544332 333333333344445445556788888888776653 333433333
Q ss_pred hh----eeccCCCCHHHHHHHHHHHHhhcC------CCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC
Q 002235 320 DV----LRALNSPNLDIRRKTLDIVLELIT------PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF 389 (949)
Q Consensus 320 ~i----l~~L~d~d~~Ir~~aL~lL~~l~~------~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf 389 (949)
.| +.+..+....+--.-++.|...|+ .++=..|...+..-+.++.+ +..-....+.+++.+.+.+.+|
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~--DP~V~~~~qd~f~el~q~~~~~ 607 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE--DPQVASLAQDLFEELLQIAANY 607 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhh
Confidence 32 233344444555555555555443 22333455555555555543 1112345677888888888899
Q ss_pred cccHHHHHHHHHHHHhCCCc----ccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHh
Q 002235 390 PEVASTVVHLLMDFLGDSNV----ASAIDVIIFVREIIEMNP-KLRVSIITRLLDNF 441 (949)
Q Consensus 390 ~~~~~~~l~~L~~lL~~~~~----~v~~e~i~~l~~ii~~~p-~~~~~~l~~L~~~l 441 (949)
.+....+++.++..|..++. ....-++.+|.-++++-| .+-..++..++..+
T Consensus 608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaV 664 (1005)
T KOG2274|consen 608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAV 664 (1005)
T ss_pred cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHh
Confidence 99999999999999988772 233335677777777654 34445555555444
No 182
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=73.44 E-value=9.4 Score=33.29 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=38.1
Q ss_pred cceeEEEEEEEecChhhhcceEEEEeecCCeEEeecC-CcceeCCCCeeEEEEEEEEec-CCcce
Q 002235 738 HYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERP-QNYTLAPESSKQIKANIKVSS-TETGV 800 (949)
Q Consensus 738 ~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p-~~~~l~p~~~~~i~~~~kv~s-~e~g~ 800 (949)
...+.+.+.|.|.....++|+++.+....+|+.-..| ....|.|++..++.+.+++.. ...|.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~ 68 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGT 68 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEE
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCce
Confidence 3467889999999988899999999877778833333 223699999999999888863 34454
No 183
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.05 E-value=4.8 Score=42.10 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=97.5
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCH--HHHHHHHHHhhcCCchhhHHHHHHH
Q 002235 58 IVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNE--YIRGVTLRFLCRLNETEIIEPLIPS 135 (949)
Q Consensus 58 Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~--~iR~~ALr~L~~I~~~el~~~l~~~ 135 (949)
....+.++..++.|-++++++....+..+ ++ ...-+.+-+.+-+. .+=+++-+.++.+.... +.+.+.
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~ 124 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLT-----EE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALEL 124 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG-------HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHH
Confidence 34446688888999999888765422211 11 34566666655433 45566677777764433 566778
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh---hHHHHHHHHHh
Q 002235 136 VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---RAINYLLTHVD 212 (949)
Q Consensus 136 I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~---~ai~~L~~~l~ 212 (949)
+.+.+.+.|+++||.|+.+..+.+. . .-.+...+++...+ .|.+..|+.+.--+|.++... ...++|....
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~--~--~~~~~~l~~~~~~~-~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~- 198 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIR--K--EDFDELLEIIEALL-KDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS- 198 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGG--G--CHHHHHHHHHHHCT-TGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS--
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc-
Confidence 8899999999999999999988777 4 23345668888754 888999999888888888644 3455655422
Q ss_pred hcCccChhHHHHH
Q 002235 213 RVSEWGELLQMVV 225 (949)
Q Consensus 213 ~i~~~~p~~q~~i 225 (949)
...++|..-..
T Consensus 199 --~~~~~~~~r~A 209 (213)
T PF08713_consen 199 --DRLSRWTLRYA 209 (213)
T ss_dssp ------HHHHHHH
T ss_pred --ccCchhHHHHH
Confidence 23556654433
No 184
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.62 E-value=2.5e+02 Score=34.80 Aligned_cols=272 Identities=14% Similarity=0.149 Sum_probs=151.4
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH------
Q 002235 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA------ 203 (949)
Q Consensus 130 ~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a------ 203 (949)
+.+..+++ .+.+.+++||. ++.-+..+.- +++..++. ..-+..+ ...|++=+.+=+..|..+-|+-.
T Consensus 239 ~el~~~l~-k~l~~~~~~rp-~~~~l~~~~f--f~D~~~~a-LrfLD~l--~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~ 311 (700)
T KOG2137|consen 239 SELRESLK-KLLNGDSAVRP-TLDLLLSIPF--FSDPGLKA-LRFLDDL--PQKDNSQKSSFLKGLSKLIPTFPARVLFQ 311 (700)
T ss_pred HHHHHHHH-HHhcCCcccCc-chhhhhcccc--cCCchhhh-hhhcccc--cccCcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 33444444 44578999999 7777776665 44433322 1222221 23566666655556665544421
Q ss_pred --HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchh--HHHHHHHHHHHHcCCc----hHHHHHHHHHHHccCCChHH
Q 002235 204 --INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE--KGKYIKIIISLLNAPS----TAVIYECAGTLVSLSSAPTA 275 (949)
Q Consensus 204 --i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~--~~~li~~L~~lL~s~s----~aV~~Eaa~~l~~l~~~~~~ 275 (949)
++.|+..+. ++-++-.++-++..++...+.. ..+++..|..+++.+. ....+|=..+|.+-.+.+ .
T Consensus 312 kiLP~L~~el~-----n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e-~ 385 (700)
T KOG2137|consen 312 KILPTLVAELV-----NTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE-E 385 (700)
T ss_pred hhhhHHHHHhc-----cccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH-H
Confidence 222333321 1222333333333333332222 3456677777776432 346777777777766544 4
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh-----hHHHHHHhheeccCCCCHHHHHHHHHHHHhhc---CCC
Q 002235 276 IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD-----IMVDLIMDVLRALNSPNLDIRRKTLDIVLELI---TPR 347 (949)
Q Consensus 276 l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~-----~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~---~~~ 347 (949)
++.-+.+++-.-+++.+..++-.+|+.+..++..-+. .+-+-+..+ ++...+.++|.-+|.-+..++ +..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666556788889999999988877764322 122233333 677889999987776655554 444
Q ss_pred cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcc----cHHHHHHHHHHHHhCCCcccH---HHHHHHHH
Q 002235 348 NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE----VASTVVHLLMDFLGDSNVASA---IDVIIFVR 420 (949)
Q Consensus 348 Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~----~~~~~l~~L~~lL~~~~~~v~---~e~i~~l~ 420 (949)
++-+.+.-+.+++. -.+++..-..++....++.+.+. .++.++..++.+..... ... .+.+.+++
T Consensus 464 ~v~d~~lpi~~~~~-------~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~-L~~~Qy~~~m~~i~ 535 (700)
T KOG2137|consen 464 AVLDELLPILKCIK-------TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS-LNGEQYNKYMSEIR 535 (700)
T ss_pred HhHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc-ccHHHHHHHHHHHH
Confidence 55444444444332 13678888888888888876554 35777777776555433 322 23445555
Q ss_pred HHHH
Q 002235 421 EIIE 424 (949)
Q Consensus 421 ~ii~ 424 (949)
.+++
T Consensus 536 ~ml~ 539 (700)
T KOG2137|consen 536 LMLS 539 (700)
T ss_pred HHHh
Confidence 5543
No 185
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=72.29 E-value=41 Score=38.80 Aligned_cols=140 Identities=19% Similarity=0.280 Sum_probs=73.3
Q ss_pred HHccCCchHHHHHHHHHHHHHHhhChhhHHH---HHHh--heeccCC--CCHHHHHHHHHHHHhhcCC-CcHHHHHHHHH
Q 002235 286 LLLSQSDNNVKLIVLDRLNELRSSHRDIMVD---LIMD--VLRALNS--PNLDIRRKTLDIVLELITP-RNINEVVLMLK 357 (949)
Q Consensus 286 lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~---~~~~--il~~L~d--~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~~L~ 357 (949)
++++++ ..+|-++++.+..+.. ++..++. ...+ +.++|.- .+..=|..||.++.++.+- +.++.+=..+.
T Consensus 33 ~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vv 110 (371)
T PF14664_consen 33 MLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVV 110 (371)
T ss_pred HHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHH
Confidence 444444 6666666666655443 2222211 1111 2223332 2344567788887766543 22312111122
Q ss_pred HHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH--HHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHH
Q 002235 358 KEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS--TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRV 431 (949)
Q Consensus 358 kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~--~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~ 431 (949)
+-+....+ ..++.+|..++..+++++...|+... .-+.+|++.+.++.-...+.++..+-.++ ..|+.|.
T Consensus 111 ralvaiae---~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~ 182 (371)
T PF14664_consen 111 RALVAIAE---HEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRK 182 (371)
T ss_pred HHHHHHHh---CCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhh
Confidence 22222332 35678999999999999999997532 33566777776632223333455565555 3465554
No 186
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.63 E-value=2.2e+02 Score=33.84 Aligned_cols=289 Identities=11% Similarity=0.115 Sum_probs=132.0
Q ss_pred HHHHHHHHhhcCC---chhhHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHc---cCCC
Q 002235 112 IRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHP-YIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS---TEQD 184 (949)
Q Consensus 112 iR~~ALr~L~~I~---~~el~~~l~~~I~~~L~d~~p-yVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~---~d~d 184 (949)
-|..|++.|+... ..+-++.+-...+..+.++.| .+|+.|..-+..+.+ ...+..........+.+. .+.|
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~--~~~~~~~~~R~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIK--RQDSSSGLMRAEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH--ccccccHHHHHHHHHHHhcCCCchh
Confidence 4677777777653 335666777778888877644 588888877777777 333311111111112221 2334
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHH-HHHhhcCccChhHHHH--HHHHHHHhhhc--------------CchhHHHHHHHH
Q 002235 185 PSAKRNAFLMLFTCDQDRAINYLL-THVDRVSEWGELLQMV--VLELIRKVCRT--------------NKGEKGKYIKII 247 (949)
Q Consensus 185 ~~v~~~Al~~L~~i~~~~ai~~L~-~~l~~i~~~~p~~q~~--il~ll~~~~~~--------------~p~~~~~li~~L 247 (949)
..-+..|+..|.+=..+- .++. .+. +....|+... +.+..+...+. +......+++++
T Consensus 84 ~~~~l~aL~~LT~~Grdi--~~~~~~i~---~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 158 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDI--DFFEYEIG---PFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFL 158 (464)
T ss_pred HHHHHHHHHHHHcCCcCc--hhcccchH---HHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHH
Confidence 445667777776544431 1100 000 0111232211 12222222221 112234566666
Q ss_pred HHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh--hCh-hhHHHHHHhheec
Q 002235 248 ISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS--SHR-DIMVDLIMDVLRA 324 (949)
Q Consensus 248 ~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~--~~p-~~l~~~~~~il~~ 324 (949)
.++++.+... ..+..+..+...++.+-.+.+.++.--..|..+..+.. .-| ..+.+++..+-+.
T Consensus 159 ~nviKfn~~~-------------l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 159 VNVIKFNFNY-------------LDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSI 225 (464)
T ss_pred HHHHhcCCCC-------------CCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH
Confidence 6666554320 01112222222222221111111111223333333322 112 2344443333222
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC-----ccc---HHHH
Q 002235 325 LNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-----PEV---ASTV 396 (949)
Q Consensus 325 L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf-----~~~---~~~~ 396 (949)
.+-. .....+-+++-.|+.+..-...+..|..-+..... ....+...-+-+|.-++.+.-+. |.. ...+
T Consensus 226 ~~~~--~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~-~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 226 VNSV--SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDP-QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred hccc--ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCc-cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 2222 56677777888888888777777777654421111 00123344445566665554333 221 1236
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHH
Q 002235 397 VHLLMDFLGDSNVASAIDVIIFVREII 423 (949)
Q Consensus 397 l~~L~~lL~~~~~~v~~e~i~~l~~ii 423 (949)
++.+...++..++-+..|++..+..++
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 666666666666666666666666555
No 187
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=71.52 E-value=1.2e+02 Score=36.64 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=96.1
Q ss_pred CCChhHHHHHHHHHHhcchh--h--HHHHHHHHHh--h------cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 002235 182 EQDPSAKRNAFLMLFTCDQD--R--AINYLLTHVD--R------VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS 249 (949)
Q Consensus 182 d~d~~v~~~Al~~L~~i~~~--~--ai~~L~~~l~--~------i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~ 249 (949)
|++..|...|-.+|-.+..+ + -+++|..++. . .+..++-+|.+|+.+|.|-.. -.......++++..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-Aa~~~~~~~~i~~~ 326 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-AATSFPNILQIVFD 326 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-HHhCCccHHHHHhc
Confidence 34445555555555544322 1 2566666665 2 234577889999999887422 12223456777777
Q ss_pred HHcCC--chHHHHHHHHHH---HccC--CChHHHHHHHHHHHH----HH-------ccCCchHHHHHHHHHHHHHHhhCh
Q 002235 250 LLNAP--STAVIYECAGTL---VSLS--SAPTAIRAAANTYSQ----LL-------LSQSDNNVKLIVLDRLNELRSSHR 311 (949)
Q Consensus 250 lL~s~--s~aV~~Eaa~~l---~~l~--~~~~~l~~~a~~li~----ll-------l~~~d~nvr~iaL~~L~~l~~~~p 311 (949)
.|.+. ++-+.-.+...+ .... ..+..++.+...+.. ++ .+..+...|-.+.+.|..|+++.|
T Consensus 327 ~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 327 GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 78777 333333333333 1111 123344433333332 22 013467889999999999999999
Q ss_pred hhHH---HHHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 312 DIMV---DLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 312 ~~l~---~~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
..+. .++..++..|.+++.++|.-.-+.|..++
T Consensus 407 ~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 407 SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 9884 35666777888999999977666665543
No 188
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.17 E-value=38 Score=32.91 Aligned_cols=86 Identities=17% Similarity=0.320 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccCC
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNS 327 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~d 327 (949)
.+-....|.+..|-.-...+ +.++..+.+.| .+++|++.+.+|..|..+...-...|. ++..++..++..
T Consensus 16 ~D~~~il~icd~I~~~~~~~---k~a~raL~krl-~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 16 PDWALNLELCDLINLKPNGP---KEAARAIRKKI-KYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred ccHHHHHHHHHHHhCCCCCH---HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 44456666666554332222 34566666665 567889999999988888775433231 334445556554
Q ss_pred ---CCHHHHHHHHHHHHhh
Q 002235 328 ---PNLDIRRKTLDIVLEL 343 (949)
Q Consensus 328 ---~d~~Ir~~aL~lL~~l 343 (949)
.+..||.++++++...
T Consensus 92 ~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 92 SPKYDPKVREKALELILAW 110 (133)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4788999988887754
No 189
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=70.57 E-value=2.2e+02 Score=35.18 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHHhcc--hhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHcCCc-hH
Q 002235 183 QDPSAKRNAFLMLFTCD--QDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG--EKGKYIKIIISLLNAPS-TA 257 (949)
Q Consensus 183 ~d~~v~~~Al~~L~~i~--~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~--~~~~li~~L~~lL~s~s-~a 257 (949)
.|..++. ++..+..+- .+-++.-| +.++.+..++|--+...++-|.+..+.-|. ...+++..+...|.+.- -.
T Consensus 251 ~~~~~rp-~~~~l~~~~ff~D~~~~aL-rfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp 328 (700)
T KOG2137|consen 251 GDSAVRP-TLDLLLSIPFFSDPGLKAL-RFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVP 328 (700)
T ss_pred CCcccCc-chhhhhcccccCCchhhhh-hhcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccc
Confidence 4556666 444444331 22122222 234445567777777888888777776664 24566666666554321 11
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCc-hHHHHHHHHHHHHHHhh-Chh-hHHHHHHhheeccCCCCHHHHH
Q 002235 258 VIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSD-NNVKLIVLDRLNELRSS-HRD-IMVDLIMDVLRALNSPNLDIRR 334 (949)
Q Consensus 258 V~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d-~nvr~iaL~~L~~l~~~-~p~-~l~~~~~~il~~L~d~d~~Ir~ 334 (949)
++.-.+..|-...+.........-.+...+ +.++ -.+....++.+.-|.++ +++ +.+....-+.+++++.+..|..
T Consensus 329 ~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~-~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~ 407 (700)
T KOG2137|consen 329 IVLPLVLLIAEGLSQNEFGPKMLPALKPIY-SASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQE 407 (700)
T ss_pred cccchhhhhhhccchhhhhhhhhHHHHHHh-ccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHH
Confidence 222222333322221111111112222222 2222 34567778888777765 333 4455566677889999999999
Q ss_pred HHHHHHHh
Q 002235 335 KTLDIVLE 342 (949)
Q Consensus 335 ~aL~lL~~ 342 (949)
++|.++-.
T Consensus 408 ~~L~~lpt 415 (700)
T KOG2137|consen 408 LALQILPT 415 (700)
T ss_pred HHHHhhhH
Confidence 99887764
No 190
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=70.38 E-value=1.3e+02 Score=34.10 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhhcCC---chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 108 PNEYIRGVTLRFLCRLN---ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 108 ~N~~iR~~ALr~L~~I~---~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
.||-....++.+|+.=. +.++-+.++..+++.+.++.+-|||.-+.+++.++.
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 57777777776666522 567788899999999999999999999999999875
No 191
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.16 E-value=4.4 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILA 154 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~la 154 (949)
.+...|.+.+.|++|.||++|+-.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 677888889999999999988753
No 192
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=69.92 E-value=2e+02 Score=32.55 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhcCCCC-cccccchHHHHHHHHccCCChhHHH
Q 002235 112 IRGVTLRFLCRLNETEIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQG-EQLLVDAPEMIEKVLSTEQDPSAKR 189 (949)
Q Consensus 112 iR~~ALr~L~~I~~~el~~~l~~~I~~~L~-d~~pyVRk~A~lal~ki~~l~~~-~~li~~~~e~l~~~L~~d~d~~v~~ 189 (949)
.|.+..+.|+.+....+.+.+...+...+. ..|.-+...++-++.+-+. +. .++-+...+.+.+-+ .|+.+.+++
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~--~~~~~~~~~~~~~~~kGl-~~kk~~vR~ 79 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLF--FLSSELPKKVVDAFKKGL-KDKKPPVRR 79 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH--HhCcCCCHHHHHHHHHHh-cCCCCcHHH
Confidence 455666666666653445555555555553 4788888888888877665 33 333334556666656 777777777
Q ss_pred HHHHHHHhcc
Q 002235 190 NAFLMLFTCD 199 (949)
Q Consensus 190 ~Al~~L~~i~ 199 (949)
.-+..+.++.
T Consensus 80 ~w~~~~~~~~ 89 (339)
T PF12074_consen 80 AWLLCLGEAL 89 (339)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 193
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=69.17 E-value=2e+02 Score=32.29 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHhhChh-----hHHHHHHhheeccCCCCHHHHHHHHHH
Q 002235 293 NNVKLIVLDRLNELRSSHRD-----IMVDLIMDVLRALNSPNLDIRRKTLDI 339 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~p~-----~l~~~~~~il~~L~d~d~~Ir~~aL~l 339 (949)
+.+.-+||....-|...-|. .++.+...+..+|.++|..||.-|=+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEa 251 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEA 251 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 45777777777776654333 345566667778888898888765443
No 194
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.79 E-value=1.2e+02 Score=29.79 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccC-C
Q 002235 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALN-S 327 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~-d 327 (949)
+-+...+.+..+-.=... -+.++..+.+.+ .++++++.+.+|..|..+.+.-...|. ++...+..+++ .
T Consensus 21 dw~~ileicD~In~~~~~---~k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~ 96 (142)
T cd03569 21 DLASILEICDMIRSKDVQ---PKYAMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT 96 (142)
T ss_pred CHHHHHHHHHHHhCCCCC---HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc
Confidence 344555555555322112 234566666666 467888888888888887764222121 22233333333 4
Q ss_pred CCHHHHHHHHHHHHh
Q 002235 328 PNLDIRRKTLDIVLE 342 (949)
Q Consensus 328 ~d~~Ir~~aL~lL~~ 342 (949)
.+..||.+.|+++..
T Consensus 97 ~~~~Vk~kil~li~~ 111 (142)
T cd03569 97 KNEEVRQKILELIQA 111 (142)
T ss_pred CCHHHHHHHHHHHHH
Confidence 567777777777664
No 195
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.65 E-value=30 Score=34.93 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCC-cccc----cchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG-EQLL----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~-~~li----~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
....+..+..-+-+.+.+++++-|..++.-+..+.. .+ ++.. ..|...+.+.|.+...+.+...|+..|..+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~--~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVE--QCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445666777778888888889999888877777777 54 4544 235655656665555556666776666554
No 196
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=66.66 E-value=24 Score=41.12 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=69.5
Q ss_pred CcchhHHHHHHHHHHhhcCCCCCCCchHHHHH-HHHHhhcCCCCHHHHHHHHHHhhcCCchh------------------
Q 002235 67 DHTIQKLLLLYLEIIDKTDAKGRVLPEMILIC-QNLRNNLQHPNEYIRGVTLRFLCRLNETE------------------ 127 (949)
Q Consensus 67 d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~-NsL~KDL~~~N~~iR~~ALr~L~~I~~~e------------------ 127 (949)
+.--||..|=||..+ + ||| ||. -+ .-+.--|+|||+--|++||..++.|-..+
T Consensus 25 ~~~~~~~~ygyw~~~--~-pd~---~~~--g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf 96 (728)
T KOG4535|consen 25 KSIEKKVLYGYWSAF--I-PDT---PEL--GSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPF 96 (728)
T ss_pred hhhhhhhhhceeeee--c-CCC---CCC--CCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCch
Confidence 344689999999985 2 444 221 00 11123578999999999999998764221
Q ss_pred ------hHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcc------cccchHHHHHHHHccCCChhHHHHHHHH
Q 002235 128 ------IIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQ------LLVDAPEMIEKVLSTEQDPSAKRNAFLM 194 (949)
Q Consensus 128 ------l~~~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~------li~~~~e~l~~~L~~d~d~~v~~~Al~~ 194 (949)
-+..+.+.+.-.|+- ..|-|---.+-|+..+.. ..|- ++-++...+..++ ..+|+.|..+++.+
T Consensus 97 ~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~--~~p~~~l~~~~~~~~~~~ik~~i-~~~d~~v~vs~l~~ 173 (728)
T KOG4535|consen 97 SVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVS--NAPYDRLKLSLLTKVWNQIKPYI-RHKDVNVRVSSLTL 173 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHh-hcCCCChhhHHHHH
Confidence 111233333333322 233343444555555555 3331 1112234455544 78899999999888
Q ss_pred HHhcc
Q 002235 195 LFTCD 199 (949)
Q Consensus 195 L~~i~ 199 (949)
+.-+-
T Consensus 174 ~~~~v 178 (728)
T KOG4535|consen 174 LGAIV 178 (728)
T ss_pred HHHHH
Confidence 77653
No 197
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=66.19 E-value=2.7e+02 Score=32.63 Aligned_cols=117 Identities=9% Similarity=0.051 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch----HHHHHHHHccCCChhHHHHHHHHHHhcchhh---
Q 002235 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--- 202 (949)
Q Consensus 130 ~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~----~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--- 202 (949)
+..+..+..++.+++|.-|-..-..+.++|. +.+...+-+ .+++.+++.....+.+....+..|..+-..-
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~--k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYG--KFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH--H-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 3445566678888999999988888888888 666554432 3555566655566777878888877764321
Q ss_pred ----HHHHHHHHHhhc---CccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 002235 203 ----AINYLLTHVDRV---SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIIS 249 (949)
Q Consensus 203 ----ai~~L~~~l~~i---~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~ 249 (949)
...++.+.+=-+ +.... ..-.+..++..++..||.....+++.+..
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~-y~~~L~~~~~~f~~kdp~l~~~~i~~llk 262 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSS-YHQQLSYCVVQFLEKDPSLAEPVIKGLLK 262 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGG-THHHHHHHHHHHHHH-GGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 123333322111 11111 13344455555555566655555444443
No 198
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.06 E-value=2.2e+02 Score=31.75 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=47.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCch------hhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNET------EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~~------el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
+.+-+=+.++||-+|..|.+.+..+... .--+.+++.+.+.+.+..| -+-|+.|+.++.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 4555667889999999999888877655 1124567889999999888 7788888998887
No 199
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.76 E-value=2.4e+02 Score=32.03 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc---------cccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ---------LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~---------li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
+.+.+..+|..-.--.||.++.....+.+ ..++ +...+++++..++..-.++.+..++=.+|.+|..+.
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr--~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLR--RQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT----BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHh--hccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 44455567767777788887777776666 2211 112235666665544445666667777888887766
Q ss_pred H
Q 002235 203 A 203 (949)
Q Consensus 203 a 203 (949)
+
T Consensus 155 ~ 155 (335)
T PF08569_consen 155 S 155 (335)
T ss_dssp H
T ss_pred H
Confidence 4
No 200
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.21 E-value=2.2e+02 Score=31.24 Aligned_cols=86 Identities=7% Similarity=0.195 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhcCC---CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhC
Q 002235 330 LDIRRKTLDIVLELITP---RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (949)
Q Consensus 330 ~~Ir~~aL~lL~~l~~~---~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~ 406 (949)
..++.. .+.|..++.. .|+.+++..+.+ .+| -..++|-+.+++.|+.-. ||.....++.+|+++|.+
T Consensus 130 ~~~~~~-A~~La~~a~~~~~~~La~il~~ya~--~~f-----r~~~dfl~~v~~~l~~~f--~P~~~~~~l~~Ll~lL~n 199 (262)
T PF14225_consen 130 QECIEI-AEALAQVAEAQGLPNLARILSSYAK--GRF-----RDKDDFLSQVVSYLREAF--FPDHEFQILTFLLGLLEN 199 (262)
T ss_pred HHHHHH-HHHHHHHHHhCCCccHHHHHHHHHh--cCC-----CCHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhC
Confidence 344443 3555555554 455555543322 122 234678888888776433 477778999999999988
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 002235 407 SNVASAIDVIIFVREIIEM 425 (949)
Q Consensus 407 ~~~~v~~e~i~~l~~ii~~ 425 (949)
+..-+...+...++-++..
T Consensus 200 ~~~w~~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 200 GPPWLRRKTLQILKVLLPH 218 (262)
T ss_pred CcHHHHHHHHHHHHHHhcc
Confidence 7777777788888887754
No 201
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.97 E-value=3.3e+02 Score=33.33 Aligned_cols=323 Identities=14% Similarity=0.163 Sum_probs=150.0
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchH--HHHHHHHccCCChhHHHHHHH
Q 002235 116 TLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP--EMIEKVLSTEQDPSAKRNAFL 193 (949)
Q Consensus 116 ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~--e~l~~~L~~d~d~~v~~~Al~ 193 (949)
|.-+-+-+-+|+=--..+..+-..+.+.+|-+||-|.+++..+|+ +++|.+. .+.+ .+.++.+....+
T Consensus 195 A~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFK-----DIiP~YkIR~lte----~Ek~~k~sKev~- 264 (704)
T KOG2153|consen 195 ASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFK-----DIIPGYKIRPLTE----KEKRTKLSKEVL- 264 (704)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH-----hhcccceecccHH----HHhcccccHHHH-
Confidence 333333345666555667788888999999999999999999988 3444331 1111 112222211111
Q ss_pred HHHhcc----hhh--HHHHHHHHHhhcCccChhHHH----HHHHHHHHhhhcCc--hhHHHHHHHHHHHHcCCchHHHHH
Q 002235 194 MLFTCD----QDR--AINYLLTHVDRVSEWGELLQM----VVLELIRKVCRTNK--GEKGKYIKIIISLLNAPSTAVIYE 261 (949)
Q Consensus 194 ~L~~i~----~~~--ai~~L~~~l~~i~~~~p~~q~----~il~ll~~~~~~~p--~~~~~li~~L~~lL~s~s~aV~~E 261 (949)
-+.+.. .+. -++.|..+..+.+...|- |+ ..++++..+....| ....+++.++...+.+....|+..
T Consensus 265 klr~yE~~Ll~~Yk~ylQkLe~~vK~~~~~~~~-~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~ 343 (704)
T KOG2153|consen 265 KLREYEQALLKQYKSYLQKLEQFVKDLSLRTPQ-QVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSG 343 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH-HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHH
Confidence 111111 110 133344444443333443 44 34444444433332 356677777777777776667666
Q ss_pred HHHHHHccCCChH--HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHH
Q 002235 262 CAGTLVSLSSAPT--AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDI 339 (949)
Q Consensus 262 aa~~l~~l~~~~~--~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~l 339 (949)
|+.++=.+-..+. .....+..++..+++....++.--++..+..|. -+....+.-+.+-
T Consensus 344 ~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLr-------------------i~ed~~~k~ke~~ 404 (704)
T KOG2153|consen 344 CIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLR-------------------IDEDQTKKDKEDE 404 (704)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcc-------------------hhhhccchhhhcc
Confidence 6666655533321 111122233333333333333333333333221 1111111111110
Q ss_pred HHhhcCCCcHHHHHHHHH-------------HHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhC
Q 002235 340 VLELITPRNINEVVLMLK-------------KEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD 406 (949)
Q Consensus 340 L~~l~~~~Nv~~Iv~~L~-------------kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~ 406 (949)
. +.+|.+.....+. .++.+-+. +.+...........+. .....+..+...+|++
T Consensus 405 ~----k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~r-----eaea~e~aeek~k~~s----EiLkiVFtiYFrILkn 471 (704)
T KOG2153|consen 405 K----KQKNKKSSKKKLSSLSKKERKRKKERNKIEREMR-----EAEAEESAEEKMKKQS----EILKIVFTIYFRILKN 471 (704)
T ss_pred c----hhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhh-----hhhccccHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 0 1111111110000 01111111 1111222222222222 2233555666667776
Q ss_pred CCcccHHHHHHHHHHHHH-hCcccHHHHHHHHHHHhccc--chHH---HHHHHhhhcccCCCC-CCcHHHHHHHHHHHhC
Q 002235 407 SNVASAIDVIIFVREIIE-MNPKLRVSIITRLLDNFYQI--RAAR---VCTCALWIIGEYCQS-LSEVENGIATIKQCLG 479 (949)
Q Consensus 407 ~~~~v~~e~i~~l~~ii~-~~p~~~~~~l~~L~~~l~~i--~~~~---v~~~~lwiLGEy~~~-~~~~~~~~~~i~~~l~ 479 (949)
..-.....+..-+...-+ .+++.+...+.-|=+.+++. .+.+ -.++++.|+.-+|.. --|+..+.++++..+-
T Consensus 472 ~~~tll~~vlEGlakf~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~ 551 (704)
T KOG2153|consen 472 DRYTLLGAVLEGLAKFAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLF 551 (704)
T ss_pred chhhHHHHHHhhHHHHhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhc
Confidence 653333333332222211 24666766666666777776 2322 267788999999983 3378889999998885
Q ss_pred CC
Q 002235 480 EL 481 (949)
Q Consensus 480 ~~ 481 (949)
.+
T Consensus 552 ~~ 553 (704)
T KOG2153|consen 552 PM 553 (704)
T ss_pred cc
Confidence 44
No 202
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.70 E-value=11 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHH
Q 002235 112 IRGVTLRFLCRLNETEIIEPLIPSVL 137 (949)
Q Consensus 112 iR~~ALr~L~~I~~~el~~~l~~~I~ 137 (949)
||..|.++|+.+++++-+++|...++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 68899999999999998888776543
No 203
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=64.51 E-value=2.6e+02 Score=31.85 Aligned_cols=115 Identities=18% Similarity=0.336 Sum_probs=70.6
Q ss_pred cCCchHHHHHHHHHHHHHHhhChhhHHHH--------HHhheeccCCCCHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHH
Q 002235 289 SQSDNNVKLIVLDRLNELRSSHRDIMVDL--------IMDVLRALNSPNLDIRRKTLDIVLELI-TPRNINEVVLMLKKE 359 (949)
Q Consensus 289 ~~~d~nvr~iaL~~L~~l~~~~p~~l~~~--------~~~il~~L~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv~~L~ke 359 (949)
..+.-.+--=|+.++..+..+|+.+++++ ...+-.+|.++|--.|+.+|.+|..+. +..|..-..
T Consensus 174 ~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~------ 247 (335)
T PF08569_consen 174 QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT------ 247 (335)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH------
T ss_pred cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH------
Confidence 34455566667777777777777665432 122345678888888899999998866 555544322
Q ss_pred HHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002235 360 VVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLD 439 (949)
Q Consensus 360 l~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~ 439 (949)
+|++ ....+..+|.+|++....+..|+..+++-.+ .+|..-..+..-|..
T Consensus 248 --~yi~---------------------------~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 248 --RYIS---------------------------SPENLKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKPPPIVDILIK 297 (335)
T ss_dssp --HHTT----------------------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-BHHHHHHHHH
T ss_pred --HHHC---------------------------CHHHHHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCChHHHHHHHH
Confidence 2332 1256788999999988888888887776555 447655555554433
No 204
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=63.97 E-value=11 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHh
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIY 159 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~ 159 (949)
.+|.+.++|.|.++.|++.|+-|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677888999999999999999998764
No 205
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=63.24 E-value=16 Score=44.33 Aligned_cols=98 Identities=12% Similarity=0.227 Sum_probs=65.2
Q ss_pred hhcCCCCHHHHHHHHHHh----hcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc-cccchHHHHHH
Q 002235 103 NNLQHPNEYIRGVTLRFL----CRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVDAPEMIEK 177 (949)
Q Consensus 103 KDL~~~N~~iR~~ALr~L----~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~-li~~~~e~l~~ 177 (949)
|=+.+++..+|..=|+-+ ..+..+.+-..++|.+...+.|.+|.+|-.++.++..+... .++. +=-+....+.+
T Consensus 337 kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k-L~~~~Ln~Ellr~~ar 415 (690)
T KOG1243|consen 337 KLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK-LSKRNLNGELLRYLAR 415 (690)
T ss_pred HHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh-hchhhhcHHHHHHHHh
Confidence 334455555555555433 34556666677788888888888888888888887776653 3333 33345566766
Q ss_pred HHccCCChhHHHHHHHHHHhcchhh
Q 002235 178 VLSTEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 178 ~L~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
+..|.+...+-+....|..|.+..
T Consensus 416 -~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 416 -LQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred -hCccccCcccccceeeeccccccc
Confidence 456888888888888888888774
No 206
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=63.12 E-value=2.9e+02 Score=32.08 Aligned_cols=323 Identities=10% Similarity=0.116 Sum_probs=160.1
Q ss_pred CCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChh
Q 002235 107 HPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPS 186 (949)
Q Consensus 107 ~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~ 186 (949)
..|+-+...-+..|+-+..++.++.+..-+-..|...+..++ +.+-+. ..+.- ..|...+ .+| .+.|..
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a--~~~k~-~~~~~fl-~ll-~r~d~~ 129 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYA--HKLKR-TEWLSFL-NLL-NRQDTF 129 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHH--Hhhhc-cchHHHH-HHH-hcCChH
Confidence 345566777778888888888887777766666654443332 333333 11110 1244444 333 666666
Q ss_pred HHHHHHHHHHhcc---h---hh-HHH----HHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHH
Q 002235 187 AKRNAFLMLFTCD---Q---DR-AIN----YLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISL 250 (949)
Q Consensus 187 v~~~Al~~L~~i~---~---~~-ai~----~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~l-----i~~L~~l 250 (949)
.+..++..+..+. + +. ... +|..++++. ..+.. -...++++..+.+.++. +..+ ++++...
T Consensus 130 iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~-~~~~~-~~~~~rcLQ~ll~~~ey-R~~~v~adg~~~l~~~ 206 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSS-TNNDY-IQFAARCLQTLLRVDEY-RYAFVIADGVSLLIRI 206 (442)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcc-CCCch-HHHHHHHHHHHhcCcch-hheeeecCcchhhHHH
Confidence 5553444443321 1 11 233 344444431 22223 33445666666554322 2111 1444444
Q ss_pred HcC--CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh--ChhhHHHHHHhheeccC
Q 002235 251 LNA--PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS--HRDIMVDLIMDVLRALN 326 (949)
Q Consensus 251 L~s--~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~--~p~~l~~~~~~il~~L~ 326 (949)
|.+ .+--+.|+.+-+++.|+-+|...+.+ .. +-.+..|..|.+. ...+..-+...|.++++
T Consensus 207 l~s~~~~~QlQYqsifciWlLtFn~~~ae~~-----~~----------~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 207 LASTKCGFQLQYQSIFCIWLLTFNPHAAEKL-----KR----------FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred HhccCcchhHHHHHHHHHHHhhcCHHHHHHH-----hh----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 422 23458999999999888666433211 11 1112222333221 11233334444556665
Q ss_pred CC-CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc--ccHHHHHH-HHHH
Q 002235 327 SP-NLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP--EVASTVVH-LLMD 402 (949)
Q Consensus 327 d~-d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~--~~~~~~l~-~L~~ 402 (949)
.. +++.++.+.-.+.. .++...++.|.+ ++|. |.+....+-.--..+...+- ...+.|.. ...+
T Consensus 272 k~~~~~~~k~~~~~mv~----~~v~k~l~~L~~--rkys------DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG 339 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVL----CKVLKTLQSLEE--RKYS------DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSG 339 (442)
T ss_pred cCchhhHHHHHHHHHHh----cCchHHHHHHHh--cCCC------cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhC
Confidence 44 67777754443332 223334443432 3443 23333333222222222111 12233333 3334
Q ss_pred HHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHH
Q 002235 403 FLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIAT 473 (949)
Q Consensus 403 lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~ 473 (949)
.|.-+..+-.+..|. +=+.+..+-+-.++..|+..++.-.+|.+.+.+++=||||....|.....++-
T Consensus 340 ~L~WSP~Hk~e~FW~---eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k 407 (442)
T KOG2759|consen 340 RLEWSPVHKSEKFWR---ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEK 407 (442)
T ss_pred CcCCCccccccchHH---HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHH
Confidence 454444444444442 11222234456799999999998888999999999999999988876555443
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=62.97 E-value=33 Score=34.35 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCcccccc-hHHHHHHHHccCC--Ch-hHHHHHHHHHHhcchhhHH---------HHHH
Q 002235 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVD-APEMIEKVLSTEQ--DP-SAKRNAFLMLFTCDQDRAI---------NYLL 208 (949)
Q Consensus 142 d~~pyVRk~A~lal~ki~~l~~~~~li~~-~~e~l~~~L~~d~--d~-~v~~~Al~~L~~i~~~~ai---------~~L~ 208 (949)
...+-||..|.+++.++.+ ..++...+ +.+.+...+ .+. |+ .....++.+|+.+.|+-+- +.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~--~~~~~~~~~~~~~i~~~~-~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD--AAREEFKEKISDFIESLL-DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHH-ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 4688999999999999977 45543333 234554433 222 22 2344555556666665432 2222
Q ss_pred HHHhhcCccChhHHHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHc-CCchH-HHHHHHHHHHc
Q 002235 209 THVDRVSEWGELLQMVVLELIRKVCRTNK---GEKGKYIKIIISLLN-APSTA-VIYECAGTLVS 268 (949)
Q Consensus 209 ~~l~~i~~~~p~~q~~il~ll~~~~~~~p---~~~~~li~~L~~lL~-s~s~a-V~~Eaa~~l~~ 268 (949)
....+ ...++-.|..+++++..-|.... .....+++.|...++ +.++. |+.-|+-.|++
T Consensus 93 ~~~~~-~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 93 PLASR-KSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHH--CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhc-ccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 22221 14567778888888887665321 123556677777774 44455 56555555544
No 208
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.93 E-value=87 Score=30.82 Aligned_cols=89 Identities=9% Similarity=0.199 Sum_probs=54.5
Q ss_pred cCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh-----ChhhH-HHHHHhheecc
Q 002235 252 NAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-----HRDIM-VDLIMDVLRAL 325 (949)
Q Consensus 252 ~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~-----~p~~l-~~~~~~il~~L 325 (949)
...+-+...+.+-.+-.= +..-+.++..+.+.+ .++++++.+.||..|..+.+. |..+. .++..++.+++
T Consensus 15 ~~~dw~~ileicD~In~~---~~~~k~a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~ 90 (139)
T cd03567 15 REEDWEAIQAFCEQINKE---PEGPQLAVRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLV 90 (139)
T ss_pred CCCCHHHHHHHHHHHHcC---CccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHh
Confidence 334445666666666332 122334555556665 577788888888888887764 22222 23445566666
Q ss_pred CC------CCHHHHHHHHHHHHhhc
Q 002235 326 NS------PNLDIRRKTLDIVLELI 344 (949)
Q Consensus 326 ~d------~d~~Ir~~aL~lL~~l~ 344 (949)
+. .+..||.+.|+++..-.
T Consensus 91 ~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 91 SPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHH
Confidence 42 57899999999887543
No 209
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=62.47 E-value=4e+02 Score=33.38 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCc
Q 002235 330 LDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNV 409 (949)
Q Consensus 330 ~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~ 409 (949)
.++-..-+.+|++++...|...=|+.|+=-++ .+.+..=.++.|=+.+-+.+-.=...-..++..+++.|.+-|....
T Consensus 492 ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQ-vs~~~~~vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~- 569 (988)
T KOG2038|consen 492 DDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQ-VSKKNDYVSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI- 569 (988)
T ss_pred hHHHHHHhHHHHHHHhhcccchhHHHHHHHHH-HHHhhhhhHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-
Confidence 34556667888888888887777776663222 2111111234555666666643222334567788888888777544
Q ss_pred ccHHHHHHHHHHHHH
Q 002235 410 ASAIDVIIFVREIIE 424 (949)
Q Consensus 410 ~v~~e~i~~l~~ii~ 424 (949)
....|-.|++.+++
T Consensus 570 -ni~RV~AFvKRlLQ 583 (988)
T KOG2038|consen 570 -NIQRVRAFVKRLLQ 583 (988)
T ss_pred -hHHHHHHHHHHHHH
Confidence 44445555555544
No 210
>COG1470 Predicted membrane protein [Function unknown]
Probab=62.11 E-value=18 Score=42.07 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=51.0
Q ss_pred cceeEEEEEEEecChhhhcceEEEEeecCCeEEeecC-CcceeCCCCeeEEEEEEEEe-cCCcce
Q 002235 738 HYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERP-QNYTLAPESSKQIKANIKVS-STETGV 800 (949)
Q Consensus 738 ~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p-~~~~l~p~~~~~i~~~~kv~-s~e~g~ 800 (949)
..+..+.+.|.|+=+..|.||.+++....+|++...+ +.+.|.|.+..++.++||+. .+..|-
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCc
Confidence 7889999999999999999999999754448765444 56679999999999999996 345553
No 211
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=61.80 E-value=78 Score=32.42 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=50.5
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc---hhhHHHHHHHH
Q 002235 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD---QDRAINYLLTH 210 (949)
Q Consensus 134 ~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~---~~~ai~~L~~~ 210 (949)
+.+.+.+.+.++++||.|..+....+. . ..-.+...++++..+ .|.+..|+.+.--+|.++. |+.+++++.+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~--~-~~~~~~~l~~~~~~~-~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIK--K-ETDFDLLLEIIERLL-HDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH--h-cccHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 567788889999999999999998887 4 222334557777644 6677777777666776664 44455665543
No 212
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=61.66 E-value=1.4e+02 Score=27.82 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=43.2
Q ss_pred EEecceeEEEEEEEecChhhhcceEEEEeecCCeEEeecCC-cceeCCCCeeEEEEEEEE
Q 002235 735 TVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQ-NYTLAPESSKQIKANIKV 793 (949)
Q Consensus 735 ~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~-~~~l~p~~~~~i~~~~kv 793 (949)
.-++..+.+.+...|+++..+.|++++++..-.+++--.|+ ..+|.|.+..+-.+.+..
T Consensus 20 ~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 20 SPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp CCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 34788999999999999999999999998766677765555 567999776666665555
No 213
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.63 E-value=6.1e+02 Score=35.22 Aligned_cols=226 Identities=16% Similarity=0.132 Sum_probs=116.5
Q ss_pred CCchH--HHHHHHHHhhcCCCCHHHHHHHHHHhhcCC----chhhHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcCC
Q 002235 90 VLPEM--ILICQNLRNNLQHPNEYIRGVTLRFLCRLN----ETEIIEPLIPSVLQNL-QHRHPYIRRNAILAVMAIYKLP 162 (949)
Q Consensus 90 l~~e~--iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~----~~el~~~l~~~I~~~L-~d~~pyVRk~A~lal~ki~~l~ 162 (949)
+.||- -+..--+..+|..+||..|+.+-.+++++. ++-.+-.+.......+ .-++|+-|---.+|++.+++
T Consensus 868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhk-- 945 (2067)
T KOG1822|consen 868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHK-- 945 (2067)
T ss_pred cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--
Confidence 33553 456667778999999999999998888874 3333333334444444 44667777677789999988
Q ss_pred CCccccc-----chHHHHHHHHccCC-ChhHHHHHHHHHHhcc-hhhHH-----HHHHHHHhhcCccChhHHH-------
Q 002235 163 QGEQLLV-----DAPEMIEKVLSTEQ-DPSAKRNAFLMLFTCD-QDRAI-----NYLLTHVDRVSEWGELLQM------- 223 (949)
Q Consensus 163 ~~~~li~-----~~~e~l~~~L~~d~-d~~v~~~Al~~L~~i~-~~~ai-----~~L~~~l~~i~~~~p~~q~------- 223 (949)
..-...+ ....++.. |..|+ +|.|+.-++.+|..+- +.... ......+-.+....|....
T Consensus 946 yvgs~~s~qhl~t~v~illa-l~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~ 1024 (2067)
T KOG1822|consen 946 YVGSIGSGQHLNTSVSILLA-LATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYN 1024 (2067)
T ss_pred hccCCCCchhcccHHHHHHH-HhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhc
Confidence 4333333 22345555 33554 4588888888776652 22211 1111111111111122222
Q ss_pred ----------HHHHHHHHhhhcCch------hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHH--HHHHHHHHH
Q 002235 224 ----------VVLELIRKVCRTNKG------EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTA--IRAAANTYS 284 (949)
Q Consensus 224 ----------~il~ll~~~~~~~p~------~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~--l~~~a~~li 284 (949)
.++..++.-...++. .+...+-...-++.++++-|.-++++.+-++.- .|.. ....+..+.
T Consensus 1025 R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1025 RCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLC 1104 (2067)
T ss_pred cccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHH
Confidence 222322222122221 112222222223444566688888888766531 1211 223455555
Q ss_pred HHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHH
Q 002235 285 QLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIM 319 (949)
Q Consensus 285 ~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~ 319 (949)
.++ +++---.|-+.+..+.+++++.-..+-+|..
T Consensus 1105 ~~l-~s~~~i~r~~~~~clrql~~Re~sev~e~a~ 1138 (2067)
T KOG1822|consen 1105 SLL-SSSYLILRRASFSCLRQLVQREASEVCEYAQ 1138 (2067)
T ss_pred HHh-cchhhhhhhhHHhhhhHHhHHHHHHHHHHHH
Confidence 555 4555555666777777777765444444433
No 214
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=61.12 E-value=1.7e+02 Score=28.74 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=49.2
Q ss_pred cCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHh-heec
Q 002235 252 NAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMD-VLRA 324 (949)
Q Consensus 252 ~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~-il~~ 324 (949)
...+-+..+|.+..|-. .. ..-+.++..+.+.+..++++++.+.+|..|..+.+.-..-|. ++..+ +.++
T Consensus 15 ~~~dw~~ileicD~In~-~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~ 91 (141)
T cd03565 15 QSEDWGLNMEICDIINE-TE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKL 91 (141)
T ss_pred CCcCHHHHHHHHHHHhC-CC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHH
Confidence 34445566666666643 21 123456666677775556888888888888888765332222 22222 3333
Q ss_pred cC---CCCHHHHHHHHHHHHh
Q 002235 325 LN---SPNLDIRRKTLDIVLE 342 (949)
Q Consensus 325 L~---d~d~~Ir~~aL~lL~~ 342 (949)
++ +.+..|+.+.++++..
T Consensus 92 i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 92 INPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred HcccCCCcHHHHHHHHHHHHH
Confidence 33 2345666666666554
No 215
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=60.93 E-value=64 Score=37.75 Aligned_cols=155 Identities=16% Similarity=0.260 Sum_probs=89.3
Q ss_pred cCCChHHHHHHHHHHHHHhc-CC------CCcccccch-----HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH
Q 002235 141 QHRHPYIRRNAILAVMAIYK-LP------QGEQLLVDA-----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL 208 (949)
Q Consensus 141 ~d~~pyVRk~A~lal~ki~~-l~------~~~~li~~~-----~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~ 208 (949)
.|-..-||..|+.|+....+ +| ...-++||- |.++ .+=++|+++.++.-|+..+..+-... ..||.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~-~l~lkd~~~~~ra~alqv~~~~l~gs-k~fls 83 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLM-TLTLKDPSPKTRACALQVLSAILEGS-KQFLS 83 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceee-EEecCCCChhHHHHHHHHHHHHHHhh-HHHHH
Confidence 34566788888888776554 10 011223332 2222 11138899999998888877765442 45554
Q ss_pred HHHhhc-CccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHc-CCchHHHHHHHHHHHccCCC-hH-HH-----HHH
Q 002235 209 THVDRV-SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLN-APSTAVIYECAGTLVSLSSA-PT-AI-----RAA 279 (949)
Q Consensus 209 ~~l~~i-~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~-s~s~aV~~Eaa~~l~~l~~~-~~-~l-----~~~ 279 (949)
...+.- ..+.||.....-.++. ..++|.-.|. ..++-|+-+|++++-.+-.+ |- .+ ...
T Consensus 84 ~a~~~~~~~ftpf~v~~a~si~~------------~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~ 151 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSVMIACSIRE------------LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKV 151 (728)
T ss_pred HHhccCCcCCCchHHHHHHHHHH------------HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 443322 2467875443322222 2244444443 34566888888888777432 21 11 112
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHhhC
Q 002235 280 ANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (949)
Q Consensus 280 a~~li~lll~~~d~nvr~iaL~~L~~l~~~~ 310 (949)
... ++.++.++|+||+.-+|-.+..|...+
T Consensus 152 ~~~-ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 152 WNQ-IKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHH-HHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 222 455668999999999999998887654
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.93 E-value=44 Score=42.55 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=87.2
Q ss_pred chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh---------cCC---CCHHHHHHHHHHh
Q 002235 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNN---------LQH---PNEYIRGVTLRFL 120 (949)
Q Consensus 53 ~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KD---------L~~---~N~~iR~~ALr~L 120 (949)
..|+.|.| |+||+-.++|.++-..|..+--.|+... + -|-|| |.+ =++--|++|-=.|
T Consensus 512 GIFPYVLK-LLQS~a~ELrpiLVFIWAKILAvD~SCQ----~-----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVL 581 (1387)
T KOG1517|consen 512 GIFPYVLK-LLQSSARELRPILVFIWAKILAVDPSCQ----A-----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVL 581 (1387)
T ss_pred chHHHHHH-HhccchHhhhhhHHHHHHHHHhcCchhH----H-----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHH
Confidence 57999999 6699999999876555554433554311 1 23344 222 2456788888888
Q ss_pred hcCCch-------hhHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCccc----ccc-hHHHHHHHHccCCChhH
Q 002235 121 CRLNET-------EIIEPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQL----LVD-APEMIEKVLSTEQDPSA 187 (949)
Q Consensus 121 ~~I~~~-------el~~~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~l----i~~-~~e~l~~~L~~d~d~~v 187 (949)
+.|... -+-..++..-...++| ++|..|.-.++|++++.. .++.. +++ +.+.+...| .|+-|.|
T Consensus 582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~--d~~~Arw~G~r~~AhekL~~~L-sD~vpEV 658 (1387)
T KOG1517|consen 582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE--DYDEARWSGRRDNAHEKLILLL-SDPVPEV 658 (1387)
T ss_pred HHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--hcchhhhccccccHHHHHHHHh-cCccHHH
Confidence 876432 1112233333445666 589999999999999999 55532 122 245665544 8999999
Q ss_pred HHHHHHHHHhc
Q 002235 188 KRNAFLMLFTC 198 (949)
Q Consensus 188 ~~~Al~~L~~i 198 (949)
+.+|+.+|...
T Consensus 659 RaAAVFALgtf 669 (1387)
T KOG1517|consen 659 RAAAVFALGTF 669 (1387)
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 217
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.72 E-value=74 Score=31.48 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccCC
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNS 327 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~d 327 (949)
.+-++.++.+-.+-.=.. .-+.++..+.+.+ .+++|++.+.+|..|..+.+.-...|. ++...+.+++++
T Consensus 16 ~dw~~il~icD~I~~~~~---~~k~a~ral~KRl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 16 ENWGLILDVCDKVKSDEN---GAKDCLKAIMKRL-NHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred cCHHHHHHHHHHHhcCCc---cHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc
Confidence 344555555555543221 2234555666665 467788888888888887765332221 244445555665
Q ss_pred -CCHHHHHHHHHHHHhh
Q 002235 328 -PNLDIRRKTLDIVLEL 343 (949)
Q Consensus 328 -~d~~Ir~~aL~lL~~l 343 (949)
.+..||.+.++++...
T Consensus 92 ~~~~~Vk~kil~li~~W 108 (144)
T cd03568 92 RVHPTVKEKLREVVKQW 108 (144)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 6788898888877753
No 218
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=59.67 E-value=6.9 Score=30.04 Aligned_cols=39 Identities=15% Similarity=0.387 Sum_probs=28.6
Q ss_pred HHHHHHhhChhhHH--HHHHhheeccCCCCHHHHHHHHHHH
Q 002235 302 RLNELRSSHRDIMV--DLIMDVLRALNSPNLDIRRKTLDIV 340 (949)
Q Consensus 302 ~L~~l~~~~p~~l~--~~~~~il~~L~d~d~~Ir~~aL~lL 340 (949)
.|..+....|.++. .....+...+.|+++.||.-|++++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35566777777764 3444566778999999999999874
No 219
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.10 E-value=11 Score=38.97 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhcCCch-hhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc
Q 002235 100 NLRNNLQHPNEYIRGVTLRFLCRLNET-EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (949)
Q Consensus 100 sL~KDL~~~N~~iR~~ALr~L~~I~~~-el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~ 169 (949)
.+.+=..|+|+++|-.|+-++...... .-.+.+...+..++.|.+.||||+..-++..+++ .+|+.+-
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~--~~~~~v~ 177 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK--KDPERVI 177 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--hCHHHHH
Confidence 344455789999998888888775443 5677888888999999999999999999999999 7775443
No 220
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=58.59 E-value=2.5e+02 Score=31.49 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=47.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH---HH--HHHhheeccCCCCHHHHHHHHHHHHhhcC
Q 002235 279 AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM---VD--LIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 279 ~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l---~~--~~~~il~~L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
+...+...+.+..++..-.+|+.-+..+....|+.. .. -..+|+.+++++|..||-.||..+..+.+
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 445555655444444366788888888888888743 22 34567888999999999999998876543
No 221
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=57.27 E-value=7.3e+02 Score=34.79 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=29.1
Q ss_pred HHHHhhcCCc--hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 116 TLRFLCRLNE--TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 116 ALr~L~~I~~--~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
|..-+.+++. ..+-..+.++..+.--|++..|+--|+.++.++.-
T Consensus 1120 a~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~ 1166 (1780)
T PLN03076 1120 AHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSM 1166 (1780)
T ss_pred HHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Confidence 3334444442 45555567777777778888888888888766544
No 222
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.89 E-value=4.2e+02 Score=31.60 Aligned_cols=317 Identities=17% Similarity=0.219 Sum_probs=163.5
Q ss_pred HHHHHHHhcCC---ChHHHHHHHHHHHHHHhCCCCC-----CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCC
Q 002235 19 ANEIKEALEGN---DVPAKVDAMKKAIMLLLNGETL-----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (949)
Q Consensus 19 ~~eir~~L~s~---~~~~k~~aL~kli~l~~~G~d~-----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l 90 (949)
.+|++..|... =+..-++.+.+.+.++++-.-+ -.+||++.+ + .|..+|+++|--+..-
T Consensus 18 P~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~-~---~dk~lRkllythiv~~--------- 84 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAEDLLELFFPLLR-C---GDKNLRKLLYTHIVTT--------- 84 (616)
T ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh-c---CchhHHHHHHHHHHHH---------
Confidence 36777777765 2456665555555555555433 378888776 4 6777799998744332
Q ss_pred CchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc
Q 002235 91 LPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (949)
Q Consensus 91 ~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~ 170 (949)
|=-||.--|+ + -+--.+-..+-..|.+.++---+.|+..+.-+|+ ..-..-.+
T Consensus 85 ----Ikn~n~~~kn--~-------------------klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k--r~iW~d~~ 137 (616)
T KOG2229|consen 85 ----IKNINKKHKN--D-------------------KLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK--RNIWNDSK 137 (616)
T ss_pred ----HHHHHhhccc--c-------------------hHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH--hcccccch
Confidence 1112222111 1 1112223344556777888767777777777787 33222122
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 002235 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISL 250 (949)
Q Consensus 171 ~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~l 250 (949)
-.+++... .-.++|-++.+++..+..-...+--+. ... .-..-+|-.-..+.+.+.+ ....-..++.+....+
T Consensus 138 tV~i~~~a-cf~~~~ki~vs~l~FfL~~D~~dee~d-sd~--~~d~dg~~~~~l~~~~vnk---ktkkr~~kl~~a~k~v 210 (616)
T KOG2229|consen 138 TVNIITTA-CFSKVPKILVSGLRFFLGADNEDEEDD-SDS--ESDEDGPDADALLHQRVNK---KTKKRQKKLLRAAKSV 210 (616)
T ss_pred hHHHHHHH-HhccCcHHHHhhhHHhccCCccccccc-ccc--ccccccccHHHHHHHHHhc---cchhhHHHHHHHHHHH
Confidence 24555443 246778888888877765432110000 000 0000011110111111000 0001111222222222
Q ss_pred Hc-----CCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHhhChhhHHHHHHhheec
Q 002235 251 LN-----APSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLS-QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRA 324 (949)
Q Consensus 251 L~-----s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~-~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~ 324 (949)
.+ +..+.-.|.++..+ .+|+ ..|..++..+.. ..+-++|...++.|..++..|.-.+-.++..+.+.
T Consensus 211 kkkqk~~~~~~t~nfs~i~ll----~DpQ---~fAEkLfk~~~~~~er~E~klm~~~lisRliG~HkL~l~~fY~fl~~y 283 (616)
T KOG2229|consen 211 KKKQKKKKNAPTFNFSAIHLL----HDPQ---GFAEKLFKQLLACKERFEVKLMLMKLISRLIGIHKLFLFGFYPFLQRY 283 (616)
T ss_pred HHHHhcCCCCCCCCccHHHhh----cChh---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHH
Confidence 21 11222244443333 3343 345555544432 33567889999999988887776665656666666
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-hccCCccCCHHHHHHHHHHHHHhHccCccc
Q 002235 325 LNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVK-TQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (949)
Q Consensus 325 L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~-~~~~~~d~~~e~r~~lv~aI~~la~kf~~~ 392 (949)
+..--++|. +.+.-....+.+.-...+++-|.+.+.. |++. ...+|.-..-+.+|+.+|.+-|-.
T Consensus 284 l~phqrDvT-qIl~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD--~~spEv~~vgiN~iREic~Rvpla 349 (616)
T KOG2229|consen 284 LQPHQRDVT-QILAAAAQASHDLVPPDIIEPLLKTIANNFVTD--ENSPEVMAVGINAIREICERVPLA 349 (616)
T ss_pred cCcchhhHH-HHHHHHHHhccCCCChHHhhHHHHHHHHHhccc--CCCcceeehhhhHHHHHHhhcchh
Confidence 665555554 3445555556666666666666655553 3331 456788888999999999988754
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.94 E-value=2.3e+02 Score=36.69 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCC-------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc
Q 002235 110 EYIRGVTLRFLCRLN-------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL 167 (949)
Q Consensus 110 ~~iR~~ALr~L~~I~-------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l 167 (949)
..-|-.||+.|++.- +-.+.=.+.|+|.++|.++-+-.|---+.--.||.. .+|+.
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA--vD~SC 546 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA--VDPSC 546 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh--cCchh
Confidence 345778999999975 345556689999999999999999988888889988 66654
No 224
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=54.87 E-value=34 Score=31.65 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=39.2
Q ss_pred ecceeEEEEEEEecChhhhcceEEEEee-----cCCeE--EeecCCcceeCCCCeeEEEEEEEE
Q 002235 737 HHYDIVLDVTVINRTKETLQNLCLELAT-----MGDLK--LVERPQNYTLAPESSKQIKANIKV 793 (949)
Q Consensus 737 ~~~~ivld~~v~N~t~~tLqNv~vel~t-----~g~l~--~~~~p~~~~l~p~~~~~i~~~~kv 793 (949)
...|+.+.+.+.|.++..|.||++-|.. .|-.+ .-......++.|++..++.+.|.-
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 4789999999999999999999988832 35442 334445566889998888776643
No 225
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=54.16 E-value=37 Score=34.96 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHHH---hcCCCCcccccchHHHH
Q 002235 127 EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAI---YKLPQGEQLLVDAPEMI 175 (949)
Q Consensus 127 el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki---~~l~~~~~li~~~~e~l 175 (949)
-+++.+++.++++|..++|-|..+++.++-++ ... .++.++|-...++
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~-vG~aLvPyyrqLL 126 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM-VGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 45666777777777777777777777777777 333 3444544433333
No 226
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=54.04 E-value=5.1e+02 Score=32.00 Aligned_cols=276 Identities=13% Similarity=0.111 Sum_probs=153.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhc--CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCR--LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~--I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
..+.|-+-+..+++.+-||-.++- .+..+=+++..--+...+.+.+..+|-.|++.+.-.|. ... -++...++.
T Consensus 418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglaya--Gsq--~e~V~~lL~ 493 (878)
T KOG2005|consen 418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYA--GSQ--REEVLELLS 493 (878)
T ss_pred HHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhc--CCc--hHHHHHHHh
Confidence 678899999999999999876653 34555677777778888999999999999999998887 222 122222444
Q ss_pred HHHccCCChh--HHHHHHHHHHhc-----chhhHHHHHHHHHhh--cCccChhHHHHHHHHHHHhhh-cCchh-------
Q 002235 177 KVLSTEQDPS--AKRNAFLMLFTC-----DQDRAINYLLTHVDR--VSEWGELLQMVVLELIRKVCR-TNKGE------- 239 (949)
Q Consensus 177 ~~L~~d~d~~--v~~~Al~~L~~i-----~~~~ai~~L~~~l~~--i~~~~p~~q~~il~ll~~~~~-~~p~~------- 239 (949)
-.+ .|.++. |..-|-..|..| +.+-+-..|..++.+ ....++|..-..|.+--.|.. .+..+
T Consensus 494 Pi~-~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~ 572 (878)
T KOG2005|consen 494 PIM-FDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIK 572 (878)
T ss_pred HHh-cCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 434 666665 443333334443 333233333344432 124567766655555443322 22111
Q ss_pred -----HHHHHHHHHHHHcC--CchHHHHHHHH-----------------------HHHccCCChHHHHHHHHHHHHHHcc
Q 002235 240 -----KGKYIKIIISLLNA--PSTAVIYECAG-----------------------TLVSLSSAPTAIRAAANTYSQLLLS 289 (949)
Q Consensus 240 -----~~~li~~L~~lL~s--~s~aV~~Eaa~-----------------------~l~~l~~~~~~l~~~a~~li~lll~ 289 (949)
..++.+.+...-.. +......+... +++.+... .=...+...+..++.
T Consensus 573 ~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgee--ig~eM~lR~f~h~l~ 650 (878)
T KOG2005|consen 573 AIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEE--IGSEMVLRHFGHLLH 650 (878)
T ss_pred HhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhh--hhhHHHHHHHHHHHH
Confidence 01111111111110 00000000000 01111110 001123333444455
Q ss_pred CCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCcc
Q 002235 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELE 369 (949)
Q Consensus 290 ~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d 369 (949)
-..+++|-++=-.+.-+.-.+|.+ .....+-+...|.|..+..-+|=-+.-++.-.|=.+|.+-|. ++..|-.. |
T Consensus 651 yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLr-qlaSYyyK--d 725 (878)
T KOG2005|consen 651 YGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLR-QLASYYYK--D 725 (878)
T ss_pred cCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHH-HHHHHHhc--c
Confidence 677899998888888888888874 111224455678899998888877777777777777777665 44443221 4
Q ss_pred CCHHHHHHHHHHHHHhH
Q 002235 370 KNGEYRQMLIQAIHSCA 386 (949)
Q Consensus 370 ~~~e~r~~lv~aI~~la 386 (949)
.+.-|-..+.+.+-.++
T Consensus 726 ~~~Lf~vriAQGL~hlG 742 (878)
T KOG2005|consen 726 SKALFVVRIAQGLVHLG 742 (878)
T ss_pred chhHHHHHHHHHHHHhc
Confidence 55567677777776655
No 227
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=53.26 E-value=1.2e+02 Score=28.15 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred cceeEEEEEEEecChhhhc-ceEEE-Eee------cCCe----------EEeecCCcceeCCCCeeEEEEEEEEec----
Q 002235 738 HYDIVLDVTVINRTKETLQ-NLCLE-LAT------MGDL----------KLVERPQNYTLAPESSKQIKANIKVSS---- 795 (949)
Q Consensus 738 ~~~ivld~~v~N~t~~tLq-Nv~ve-l~t------~g~l----------~~~~~p~~~~l~p~~~~~i~~~~kv~s---- 795 (949)
+...-+.+.+.|..+..+. +++.. ..+ .|.. ...+.+...+++|+++..+.++|...+
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHH
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCc
Confidence 3346778888888776531 22222 111 1211 234566778899999999999999965
Q ss_pred CCcceeeeeEEEecCCc
Q 002235 796 TETGVIFGNIVYETSNV 812 (949)
Q Consensus 796 ~e~g~ifg~i~y~~~~~ 812 (949)
.-..++.|.|.|...++
T Consensus 87 ~~~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDG 103 (112)
T ss_dssp TT-EEEEEEEEEESSTT
T ss_pred ccCCEEEEEEEEEcCCC
Confidence 34677789999997543
No 228
>PF12744 ATG19_autophagy: Autophagy protein Atg19, Atg8-binding; InterPro: IPR024543 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are sequestered into double-membrane vesicles to form the autophagosome. The contents of the autophagosome are delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. In contrast to autophagy, the cytoplasm to vacuole transport (Cvt) pathway is a highly selective process that involves the sequestration of at least two specific cargos that are resident vacuolar hydrolases: aminopeptidase I (Ape1) and alpha-mannosidase (Ams1). These proteins are sequestered within a double-membrane vesicle, termed a Cvt vesicle. The Cvt vesicle is fairly consistent in size, and is much smaller than the autophagosome, being 140-160 nm in diameter. The genes involved in autophagy in yeast are termed autophagy-related (Atg) genes. Autophagy and the Cvt pathway are topologically and mechanistically similar and share most of the Atg components []. The precursor of Ape1 (prApe1) is sequestered within either Cvt vesicles or autophagosomes, depending on the nutrient conditions, and delivered to the vacuole. Atg19 is a peripheral membrane protein with differing binding sites for both Ape1 and Ams1. Atg19 plays a central role in cargo sorting and transport to the vacuole by linking Ams1 and prApe1 to Atg8 and Atg11 []. This entry represents the C-terminal region of Atg19 and homologue Atg34 (Yol083wp) [, ]. The Atg8-binding region is thought to be in the very C-terminal residues [].; PDB: 2KZK_A 2ZPN_H 2KZB_A.
Probab=51.60 E-value=17 Score=38.82 Aligned_cols=56 Identities=30% Similarity=0.319 Sum_probs=32.5
Q ss_pred EEEecceeEEEEEEEecChhhh-cceEEEEeecCCeEEeecCCcceeCCCCeeEEEE
Q 002235 734 VTVHHYDIVLDVTVINRTKETL-QNLCLELATMGDLKLVERPQNYTLAPESSKQIKA 789 (949)
Q Consensus 734 v~v~~~~ivld~~v~N~t~~tL-qNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~ 789 (949)
|+|.+.|-.|.|.+.|.++.+| -|+++++......+.--...++.|+|+..+.+++
T Consensus 86 Vtv~~~D~~L~F~L~N~g~~~lpg~l~Lvf~~~~~i~~~i~mGPHel~pg~~K~L~~ 142 (236)
T PF12744_consen 86 VTVSKRDFSLTFTLYNNGDSTLPGNLTLVFSSSNSISCTIDMGPHELGPGSKKILKF 142 (236)
T ss_dssp EEEEEETTEEEEEEEE-SSS---SS-EEEBS---SSSB-EE--SS---TT-EEEEEE
T ss_pred EEEEEecceEEEEEEcCCCcccCCCceEEEEeccceeEEeccCCcccCCCcceeeEe
Confidence 6778889999999999999998 8888888222223311233556688888888887
No 229
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=50.66 E-value=66 Score=32.36 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCcc
Q 002235 143 RHPYIRRNAILAVMAIYKLPQGEQ 166 (949)
Q Consensus 143 ~~pyVRk~A~lal~ki~~l~~~~~ 166 (949)
.++.+|+.|+-+++-|.. .+|.
T Consensus 23 ~s~~iR~E~lr~lGilGA--LDP~ 44 (160)
T PF11865_consen 23 QSQSIRREALRVLGILGA--LDPY 44 (160)
T ss_pred CCHHHHHHHHHHhhhccc--cCcH
Confidence 346677777776666666 4553
No 230
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.61 E-value=5.7e+02 Score=31.49 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=53.8
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHH-----HhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc-CCCcHHHHHHH
Q 002235 282 TYSQLLLSQSDNNVKLIVLDRLNEL-----RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI-TPRNINEVVLM 355 (949)
Q Consensus 282 ~li~lll~~~d~nvr~iaL~~L~~l-----~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv~~ 355 (949)
+++.-..+...||....|...+.+. .+.+...+.+..-...++. +.+.|+.|++|+++.. +..||..++.
T Consensus 497 ~Lle~a~sGe~p~~s~~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f---~~t~rTlA~dIiL~~~P~~~~v~n~ll- 572 (896)
T KOG4337|consen 497 NLLETAVSGEKPEQSMRATSALAEFFLRSICQTKKKIGAPITHQLIKLF---RNTTRTLAIDIILKCVPDHQNVANLLL- 572 (896)
T ss_pred HHHHHHhccCCcchhHHHHHHHHhcCchhhhHHHHHhcchHHHHHHHHH---hcchhHHHHHHHHhcCccHHHHHHHHH-
Confidence 3444444555666666666666543 2223333333222222222 2248999999999865 3456666553
Q ss_pred HHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc
Q 002235 356 LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP 390 (949)
Q Consensus 356 L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~ 390 (949)
+.+ +.|.|....+.++|..++.+-|
T Consensus 573 -------~l~---~~dqE~~~Y~l~~i~ml~~~~p 597 (896)
T KOG4337|consen 573 -------TLN---PDDQEKWHYLLKAIEMLSGNKP 597 (896)
T ss_pred -------HhC---CChHHHHHHHHHHHHHHhccCc
Confidence 222 4467888888888876665544
No 231
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=49.95 E-value=1.7e+02 Score=26.62 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=41.9
Q ss_pred ecceeEEEEEEEecChhhhcceEEEEeecCCeEEeecCC-cceeCCCCeeEEEEEEEEe
Q 002235 737 HHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQ-NYTLAPESSKQIKANIKVS 794 (949)
Q Consensus 737 ~~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~-~~~l~p~~~~~i~~~~kv~ 794 (949)
....+.+.+...|.++..+.|++++++....+++.-.|+ ..+|.|++. +.-.+++.
T Consensus 16 ~~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~--i~q~~~i~ 72 (104)
T smart00809 16 RPGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQ--ITQVLKVE 72 (104)
T ss_pred CCCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCC--EEEEEEEE
Confidence 366789999999999999999999998766677665554 356989875 34444444
No 232
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=49.21 E-value=1.1e+02 Score=32.94 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred hccCCChHHHHHHHHHHHHHhcCCCCccc------ccchH------HHHHHHHccCCChhHHHHHHHHHHhcc------h
Q 002235 139 NLQHRHPYIRRNAILAVMAIYKLPQGEQL------LVDAP------EMIEKVLSTEQDPSAKRNAFLMLFTCD------Q 200 (949)
Q Consensus 139 ~L~d~~pyVRk~A~lal~ki~~l~~~~~l------i~~~~------e~l~~~L~~d~d~~v~~~Al~~L~~i~------~ 200 (949)
+++|++|.|-|+|+.|...+|++ ....+ -.-|. +-|-..+ ...+++|+.+|+..+..+- +
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~-~~~~i~~~~~~~~~W~~~~~lK~~Il~~~-~~~~~gvk~~~iKFle~vIl~qs~~~ 78 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPL-VFRWICVNPSDEQLWESMNELKDRILSLW-DSENPGVKLAAIKFLERVILVQSPGS 78 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHH-HHHHHS--HHHHHHHHHHHHHHHHHHHGG-GSSSHHHHHHHHHHHHHHHHHTS---
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH-HHHHHcCCchHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 47899999999999999999983 22212 11231 1222323 5557788888877765431 0
Q ss_pred hh-HHH---HHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCc--hHHHHHHHHHHHccCC-Ch
Q 002235 201 DR-AIN---YLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS--TAVIYECAGTLVSLSS-AP 273 (949)
Q Consensus 201 ~~-ai~---~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s--~aV~~Eaa~~l~~l~~-~~ 273 (949)
.. ... .----++.++...|++...-|+ .+...+++.|...+++.. +.+...+++++..+.. -|
T Consensus 79 ~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le----------~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP 148 (239)
T PF11935_consen 79 SDSPPRRGSPNDFSLSSVPPNHPLLNPQQLE----------AEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP 148 (239)
T ss_dssp TTS---GGGTTS--GGGS-TT-SSS-HHHHH----------HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG
T ss_pred CCCccccccccCCCHHHcCCCCCcCCHHHHH----------HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh
Confidence 00 000 0000122233334443332222 356678888888888765 5577777777776642 24
Q ss_pred HHHHHHHHHHHHH
Q 002235 274 TAIRAAANTYSQL 286 (949)
Q Consensus 274 ~~l~~~a~~li~l 286 (949)
.....+...+..+
T Consensus 149 ~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 149 QFMSRILPALLSF 161 (239)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4444455555544
No 233
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=4.4e+02 Score=29.72 Aligned_cols=226 Identities=15% Similarity=0.189 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-ccccch--------HHHHHHHHccCCChhHHHHHHHHH
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDA--------PEMIEKVLSTEQDPSAKRNAFLML 195 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-~li~~~--------~e~l~~~L~~d~d~~v~~~Al~~L 195 (949)
-..+++.++|.++..|.+.+..|+.-|+-.+++|.. .++ .-+... ..++-.++ ...|..|..+|+..+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilE--dcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesi 152 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILE--DCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESI 152 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHh--cCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHH
Confidence 344556666666666666666666666666666655 332 011110 11111122 223445555555555
Q ss_pred Hhcchh-hHHHHHH--HHHhh-----c-CccChhHHHHHHHHHHHhhhcCchh-----HHHHHHHHHHHHcC-CchHHHH
Q 002235 196 FTCDQD-RAINYLL--THVDR-----V-SEWGELLQMVVLELIRKVCRTNKGE-----KGKYIKIIISLLNA-PSTAVIY 260 (949)
Q Consensus 196 ~~i~~~-~ai~~L~--~~l~~-----i-~~~~p~~q~~il~ll~~~~~~~p~~-----~~~li~~L~~lL~s-~s~aV~~ 260 (949)
..+..- .++.-+. +.++. + -..+..+...+++++-++..-.|.. ..-+++.|..-|.- .+.-|+.
T Consensus 153 krialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 153 KRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 444311 1111100 00000 0 1245566666777766655444432 23355555555555 3445777
Q ss_pred HHHHHHHccCCChHHHHH-HHHHHHHHHc-----cCCchHHHHHHHHHHHHHHh------hChhh-HHHHH---Hhheec
Q 002235 261 ECAGTLVSLSSAPTAIRA-AANTYSQLLL-----SQSDNNVKLIVLDRLNELRS------SHRDI-MVDLI---MDVLRA 324 (949)
Q Consensus 261 Eaa~~l~~l~~~~~~l~~-~a~~li~lll-----~~~d~nvr~iaL~~L~~l~~------~~p~~-l~~~~---~~il~~ 324 (949)
.|+.....+.-....-+- +-..+++++. .++||--+|-++-...++.. ..|+. ...+. .-.+..
T Consensus 233 nciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEm 312 (524)
T KOG4413|consen 233 NCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEM 312 (524)
T ss_pred hHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHh
Confidence 777766665321100000 1111222221 25566666644443333321 11221 11111 112223
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCcHHHHH
Q 002235 325 LNSPNLDIRRKTLDIVLELITPRNINEVV 353 (949)
Q Consensus 325 L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv 353 (949)
+...|++-.--|++.+..+++..-=.+++
T Consensus 313 iEmnDpdaieaAiDalGilGSnteGadll 341 (524)
T KOG4413|consen 313 IEMNDPDAIEAAIDALGILGSNTEGADLL 341 (524)
T ss_pred hhcCCchHHHHHHHHHHhccCCcchhHHH
Confidence 44456667777888888777655444433
No 234
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.63 E-value=1.4e+02 Score=34.42 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHhhcCC
Q 002235 109 NEYIRGVTLRFLCRLN 124 (949)
Q Consensus 109 N~~iR~~ALr~L~~I~ 124 (949)
...+...||++|+.+.
T Consensus 155 ~D~lv~~al~FL~~v~ 170 (370)
T PF08506_consen 155 YDILVSKALQFLSSVA 170 (370)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4466778888888753
No 235
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=47.03 E-value=3.4e+02 Score=27.97 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.7
Q ss_pred cCCCCHHHHHHHHHHHHhhcCC
Q 002235 325 LNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 325 L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
+.|++..+|..|+.++..+...
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHc
Confidence 5789999999999999877654
No 236
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=47.02 E-value=2.3e+02 Score=30.41 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCC--cccHHHHHHHHHHHHHhCcccHHHHHHHHHHHh
Q 002235 393 ASTVVHLLMDFLGDSN--VASAIDVIIFVREIIEMNPKLRVSIITRLLDNF 441 (949)
Q Consensus 393 ~~~~l~~L~~lL~~~~--~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l 441 (949)
+..+++.|+++|.... +.....++..+..|+++.|..-..++.-|..+-
T Consensus 112 a~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 112 ANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 3567777777777665 334444566777777777776666666666553
No 237
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.01 E-value=6.9e+02 Score=31.45 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhcc
Q 002235 64 PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQ 141 (949)
Q Consensus 64 ~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I--~~~el~~~l~~~I~~~L~ 141 (949)
++++..-|+|..-||+.+-+.= -...+-+.-.+.+ +|=+.++.-||.++..+ .-||-=..|...+...|.
T Consensus 280 ~~~~~~~k~Ll~WyfE~~LK~l-----y~rfievLe~lS~---D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlG 351 (988)
T KOG2038|consen 280 TNKRLRDKILLMWYFEHELKIL-----YFRFIEVLEELSK---DPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLG 351 (988)
T ss_pred cccccccceehHHHHHHHHHHH-----HHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcC
Confidence 4677778888888888874321 1223333344443 46689999999988765 357766788999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHcc-CCChhHHHHHHHHHHhcc
Q 002235 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLST-EQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 142 d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~-d~d~~v~~~Al~~L~~i~ 199 (949)
|++.-+-.+|...+..+.. ..|..---..+.|+.++.. .-+....+.|+..|.++.
T Consensus 352 DpqnKiaskAsylL~~L~~--~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 352 DPQNKIASKASYLLEGLLA--KHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred CcchhhhhhHHHHHHHHHh--hCCcceeehHHHHHHHHcccCccccceeehhhhhhhhH
Confidence 9999999999999999988 7776544456788887632 233456778888888764
No 238
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.21 E-value=7.2e+02 Score=31.45 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=84.9
Q ss_pred CccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcC----CchH-H-HHHHHHHHHc--cCC----ChHHHHHHHHH
Q 002235 215 SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNA----PSTA-V-IYECAGTLVS--LSS----APTAIRAAANT 282 (949)
Q Consensus 215 ~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s----~s~a-V-~~Eaa~~l~~--l~~----~~~~l~~~a~~ 282 (949)
....|.+++.+|..++.+.+.=......+.+++.++++- ++|. | ..|=.-.++. +.. .|+.+ .+...
T Consensus 625 s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll-~L~p~ 703 (978)
T KOG1993|consen 625 SEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL-LLFPH 703 (978)
T ss_pred hccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH-HHHHH
Confidence 456789999999999988765333444555555555542 2322 2 2222222211 111 13333 33444
Q ss_pred HHHHHccCCchHHHHHHHHHHHH-HHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-H
Q 002235 283 YSQLLLSQSDNNVKLIVLDRLNE-LRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKE-V 360 (949)
Q Consensus 283 li~lll~~~d~nvr~iaL~~L~~-l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~ke-l 360 (949)
++-.+ +.+..|++.+ +..+.. +.-.++..++.|-..|+.-+++-=..||...+-.+++++. .+++. .. +
T Consensus 704 l~~~i-E~ste~L~t~-l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkive-----ili~t--~~il 774 (978)
T KOG1993|consen 704 LLYII-EQSTENLPTV-LMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVE-----ILIKT--NPIL 774 (978)
T ss_pred HHHHH-HhhhhhHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHhh--hHHH
Confidence 33333 3333344442 222221 2223555666666666555554444577766666665321 11100 00 0
Q ss_pred HHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCC
Q 002235 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDS 407 (949)
Q Consensus 361 ~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~ 407 (949)
.... ....-..+..+| -...+||....||+.++...+-.+
T Consensus 775 ~~~~------~~~~L~~lf~~I-~~~~~yP~~~~~yl~vvaRi~l~n 814 (978)
T KOG1993|consen 775 GSLL------FSPLLSRLFLSI-AENDKYPYVMGEYLLVVARISLRN 814 (978)
T ss_pred Hhhh------cchhhHHHHHHH-HhCCCCchhHHHHHHHHHHHHhcC
Confidence 0010 012233344444 223478988899998888765433
No 239
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=46.05 E-value=55 Score=33.73 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcC--Cchh
Q 002235 50 TLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL--NETE 127 (949)
Q Consensus 50 d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I--~~~e 127 (949)
|+..+++-...-+ ...++..+-++.-.+..+-+.....++.|-+--.+-.|++.|++.|+-+...+|++|..+ ..+.
T Consensus 35 dy~~~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGL-RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhh-hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3445666666655 678889998988888887444222222232334677899999999999999999999987 4567
Q ss_pred hHHHHHHHHHHhc
Q 002235 128 IIEPLIPSVLQNL 140 (949)
Q Consensus 128 l~~~l~~~I~~~L 140 (949)
+-+.|.|+.++.|
T Consensus 114 vG~aLvPyyrqLL 126 (183)
T PF10274_consen 114 VGEALVPYYRQLL 126 (183)
T ss_pred hhHHHHHHHHHHH
Confidence 7778888887776
No 240
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.93 E-value=2.3e+02 Score=33.92 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=64.4
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHH
Q 002235 114 GVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFL 193 (949)
Q Consensus 114 ~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~ 193 (949)
|.|+-+|+.=.. .+.+.+.+-..+--.+|.+||.--+|..-++. .+|+. +..+.++++. .|.|..|..+++.
T Consensus 627 g~AliamGedig---~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~--SnPQm--~vfDtL~r~s-hd~dl~v~~ntIf 698 (881)
T COG5110 627 GCALIAMGEDIG---SEMVLRHFSHSMHYGSSHIRSVLPLAYGILSP--SNPQM--NVFDTLERSS-HDGDLNVIINTIF 698 (881)
T ss_pred hhHHhhhcchhh---HHHHHHHhhhHhhcCcHHHHHHHHHHHhcccC--CCcch--HHHHHHHHhc-cccchhHHHHHHH
Confidence 444444443333 34456677777777899999999999988888 77764 3568888875 8999999999999
Q ss_pred HHHhcchhhHHHHHHHHHhh
Q 002235 194 MLFTCDQDRAINYLLTHVDR 213 (949)
Q Consensus 194 ~L~~i~~~~ai~~L~~~l~~ 213 (949)
++.-|.....-..|.+++++
T Consensus 699 amGLiGAGT~NaRlaqlLrQ 718 (881)
T COG5110 699 AMGLIGAGTLNARLAQLLRQ 718 (881)
T ss_pred HhhccccCcchHHHHHHHHH
Confidence 99888655422334444443
No 241
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=44.60 E-value=1.1e+02 Score=30.69 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=66.4
Q ss_pred HHHHHHHhhc--CCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH---HHHHHHHHHHHhCCCc
Q 002235 335 KTLDIVLELI--TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA---STVVHLLMDFLGDSNV 409 (949)
Q Consensus 335 ~aL~lL~~l~--~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~---~~~l~~L~~lL~~~~~ 409 (949)
...++|.++. .+....+|++++.+.+....+ .... ..++.+..++.++|-.- ..-+..+++.+..-.+
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~---~~~~----~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~ 109 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSS---SPSS----QYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPG 109 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--S---S--H----HHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-H
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCc---cchh----HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCH
Confidence 5555555553 455666777777777665432 1112 34677788888887543 3444455555555556
Q ss_pred ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHH
Q 002235 410 ASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCA 453 (949)
Q Consensus 410 ~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~ 453 (949)
.++...+.++.=+++..|++|+..+.-|-..+-.- +...+..+
T Consensus 110 ~~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r-~~~~R~~A 152 (158)
T PF14676_consen 110 DVAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSR-ELDARQMA 152 (158)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-S-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccc-cHHHHHHH
Confidence 66777778888888888999999999888887542 23444443
No 242
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=43.43 E-value=1.7e+02 Score=31.81 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCC---CcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHH
Q 002235 373 EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDS---NVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARV 449 (949)
Q Consensus 373 e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~---~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v 449 (949)
-....+++++..++.|--.-.-.+++-..+.|+.- .+.....++..+..+=..+|+.-.-++.+|+++ .+-. -
T Consensus 51 ~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~--~ii~--~ 126 (253)
T PF09090_consen 51 FVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNY--GIIS--P 126 (253)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--TSS---H
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhc--CCCC--H
Confidence 35566788888888773333334444444444322 222333456777777778888777777777764 3322 3
Q ss_pred HHHHhhhcccCC-CCCCcHHHHHHHHHHHhCC
Q 002235 450 CTCALWIIGEYC-QSLSEVENGIATIKQCLGE 480 (949)
Q Consensus 450 ~~~~lwiLGEy~-~~~~~~~~~~~~i~~~l~~ 480 (949)
...+-|+++.+. ...-.-..+|+.+...+..
T Consensus 127 ~~Vv~w~f~~~~~~~~~~~~~~wE~l~~tl~k 158 (253)
T PF09090_consen 127 SAVVNWVFSPENGNQELTRSYVWEILNRTLRK 158 (253)
T ss_dssp HHHHHHHTSGGG-TTTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccccchhhchHHHHHHHHHHH
Confidence 456679999887 3333345788888777753
No 243
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=43.07 E-value=2.6e+02 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
.+++++.++..|.+....+-.-||-.|..++.++..
T Consensus 1 ~~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 1 SPELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLH 36 (193)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788888889999999999999999999999986
No 244
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=42.79 E-value=85 Score=30.05 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=17.3
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 283 YSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 283 li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
+++++ +++|++|||-||.+++++..
T Consensus 91 vM~Lm-~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 91 VMELM-NHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHT-S-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 34444 67888888888888887764
No 245
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.58 E-value=71 Score=30.73 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCc
Q 002235 301 DRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRN 348 (949)
Q Consensus 301 ~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~N 348 (949)
+-|.++....+..+......+..-|++.++.||.|+|.+|-.+|...+
T Consensus 23 ~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 23 EEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 345555556666666665667778899999999999999888777654
No 246
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=42.01 E-value=58 Score=30.25 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHccCcccHHHHH-----HHHHHH--HhCCCcccHHHHHHHHHHHHHhCcccHH
Q 002235 374 YRQMLIQAIHSCAIKFPEVASTVV-----HLLMDF--LGDSNVASAIDVIIFVREIIEMNPKLRV 431 (949)
Q Consensus 374 ~r~~lv~aI~~la~kf~~~~~~~l-----~~L~~l--L~~~~~~v~~e~i~~l~~ii~~~p~~~~ 431 (949)
||..+|+.|+.+|-+.+...+.+. ..+++. +.+.++++.+-++..||.+...+|+-++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 788899999999988776654332 333332 2234456666688888888888877543
No 247
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=41.76 E-value=30 Score=23.99 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcCCchhhHHHHHH
Q 002235 111 YIRGVTLRFLCRLNETEIIEPLIP 134 (949)
Q Consensus 111 ~iR~~ALr~L~~I~~~el~~~l~~ 134 (949)
.+|-.|..+|+++.+++.++.|..
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~ 25 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIK 25 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH
Confidence 578899999999998888766654
No 248
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=41.43 E-value=9.1e+02 Score=32.27 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHccCCCh-HH-HHHHHHHHHHHHccCCchHHHHHHHHHHHH-HHh---h--Chhh
Q 002235 242 KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP-TA-IRAAANTYSQLLLSQSDNNVKLIVLDRLNE-LRS---S--HRDI 313 (949)
Q Consensus 242 ~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~-~~-l~~~a~~li~lll~~~d~nvr~iaL~~L~~-l~~---~--~p~~ 313 (949)
...+.+..++++...+|+|.|++++..+.... .+ .-.+...++-++ ...+.-+|-.+...+.. +.. + +|.
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll-~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~- 893 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLL-GDLDKFVRRQGADELIELLDAVLMVGLVPY- 893 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHhhhhhHHHHHHHHHHhhccccccc-
Confidence 45677888889999999999999999885431 11 112333333333 44444444433333222 222 1 121
Q ss_pred HHHHHHhheeccCCCCHHHHHHHHHHHH
Q 002235 314 MVDLIMDVLRALNSPNLDIRRKTLDIVL 341 (949)
Q Consensus 314 l~~~~~~il~~L~d~d~~Ir~~aL~lL~ 341 (949)
.-=.+.-++++++|.+.++|..|=+...
T Consensus 894 ~~Llv~pllr~msd~~d~vR~aat~~fa 921 (1549)
T KOG0392|consen 894 NPLLVVPLLRRMSDQIDSVREAATKVFA 921 (1549)
T ss_pred ceeehhhhhcccccchHHHHHHHHHHHH
Confidence 0112333788899988888765544443
No 249
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.35 E-value=2.5e+02 Score=36.56 Aligned_cols=128 Identities=16% Similarity=0.259 Sum_probs=82.6
Q ss_pred cCCchHHHHHHHHHHHHHHhhChhhHH--HHHHhheeccCCCCHHHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHHH
Q 002235 289 SQSDNNVKLIVLDRLNELRSSHRDIMV--DLIMDVLRALNSPNLDIRRKTLDIVLELITPR----NINEVVLMLKKEVVK 362 (949)
Q Consensus 289 ~~~d~nvr~iaL~~L~~l~~~~p~~l~--~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~----Nv~~Iv~~L~kel~~ 362 (949)
.+-+|++|.+.+..|..-.+.+|..|- .|...+==.|+|.+.+||++.+.+|..|-..+ -++..++.++..+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 356799999999999999999999874 46677766799999999999999999887552 233333333333322
Q ss_pred hccCCccCCHHHHHHHHHHHHH--hHc-cCccc-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 002235 363 TQSGELEKNGEYRQMLIQAIHS--CAI-KFPEV-ASTVVHLLMDFLGDSNVASAIDVIIFVREII 423 (949)
Q Consensus 363 ~~~~~~d~~~e~r~~lv~aI~~--la~-kf~~~-~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii 423 (949)
-. +......|++++. |-. ..+.. .+..+..+..++-+.+..++.++..++..-+
T Consensus 377 Ma-------drd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 377 MA-------DRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HH-------hhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 11 1122233444431 111 22322 3466667777888888778888776665443
No 250
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.90 E-value=75 Score=37.13 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhc
Q 002235 371 NGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFY 442 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~ 442 (949)
..++--...++|..++..-.+-......+|++.++.++..+..-++..+-++.-+.|.+|.-+++.+-++|+
T Consensus 20 ~~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii~n~~efLe 91 (661)
T KOG2374|consen 20 AQEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLIIENLDEFLE 91 (661)
T ss_pred CcccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHHhCHHHHHH
Confidence 345666677777777744334467788999999999999999988888888888889999999999999886
No 251
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=40.63 E-value=6.4e+02 Score=29.23 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=42.3
Q ss_pred HhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 002235 307 RSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVV 361 (949)
Q Consensus 307 ~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~ 361 (949)
-..+|.+-..-...-+.|..|+|..||+.||.=|-..|..++...+.+.|.+-|.
T Consensus 52 fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 52 FKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 3456665555444456788999999999999999999999999888887764443
No 252
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=40.07 E-value=3.7e+02 Score=26.94 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCC-chHHHHHHHHHHHccCC
Q 002235 242 KYIKIIISLLNAP-STAVIYECAGTLVSLSS 271 (949)
Q Consensus 242 ~li~~L~~lL~s~-s~aV~~Eaa~~l~~l~~ 271 (949)
.+++.|.++|++. +..++.||.|++..+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGA 40 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 4555666666554 35566666666666653
No 253
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.65 E-value=38 Score=25.32 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHccC
Q 002235 243 YIKIIISLLNAPSTAVIYECAGTLVSLS 270 (949)
Q Consensus 243 li~~L~~lL~s~s~aV~~Eaa~~l~~l~ 270 (949)
.++.|..+|.+.++.|+.+|+.+|.++.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678888999999999999999998763
No 254
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=39.28 E-value=3.2e+02 Score=31.13 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=77.0
Q ss_pred HHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc-C---ccc
Q 002235 317 LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-F---PEV 392 (949)
Q Consensus 317 ~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k-f---~~~ 392 (949)
+...+...+.+++..-|..||+- |-++.-+..++..+...+......+.+.+...-..+++.+..+..+ + .+-
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~s---L~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y 255 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQS---LRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY 255 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH---hccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence 33334444445666677766664 5577777888877766555433211111334444455555555432 1 111
Q ss_pred HHHHHHHHHHHHhC----CC------cccHHHHHHHHHHHHHh----CcccHHHHHHHHHHHhcccchHH-HHHHHhhhc
Q 002235 393 ASTVVHLLMDFLGD----SN------VASAIDVIIFVREIIEM----NPKLRVSIITRLLDNFYQIRAAR-VCTCALWII 457 (949)
Q Consensus 393 ~~~~l~~L~~lL~~----~~------~~v~~e~i~~l~~ii~~----~p~~~~~~l~~L~~~l~~i~~~~-v~~~~lwiL 457 (949)
....+..++.++-. .. -..++.+...+..|+++ +|.++.++...|...+-|-..+- ..-+++-.+
T Consensus 256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL 335 (343)
T cd08050 256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL 335 (343)
T ss_pred HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence 23455555554421 11 13455566777777775 57778888888888876544332 244555555
Q ss_pred ccCCC
Q 002235 458 GEYCQ 462 (949)
Q Consensus 458 GEy~~ 462 (949)
+..|+
T Consensus 336 ~~lG~ 340 (343)
T cd08050 336 SALGP 340 (343)
T ss_pred HHhCc
Confidence 55554
No 255
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.24 E-value=2.2e+02 Score=32.89 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=66.8
Q ss_pred cCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheec----cCCCCHHHHHHHHHHHHh----hcCCCcHHHHHHHHHHHH
Q 002235 289 SQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRA----LNSPNLDIRRKTLDIVLE----LITPRNINEVVLMLKKEV 360 (949)
Q Consensus 289 ~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~----L~d~d~~Ir~~aL~lL~~----l~~~~Nv~~Iv~~L~kel 360 (949)
++...++|--++..|..+...||..++.|...++.+ +.|++..+|.....++-. ++.+. +.-.+.-++-++
T Consensus 68 kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~~l~~~yi 146 (393)
T KOG2149|consen 68 KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMVSLLMPYI 146 (393)
T ss_pred cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchHHHHHHHH
Confidence 566778888999999988888888887665554443 568888888877766554 33333 444444455555
Q ss_pred HHhccCCccCCHHHHHHHHHHHHHhHccCccc
Q 002235 361 VKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (949)
Q Consensus 361 ~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~ 392 (949)
..-|. -..++.|.+...-+..+...||+.
T Consensus 147 ~~AMT---hit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 147 SSAMT---HITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHh---hccHHHHHhhHHHHHHHHHHcChH
Confidence 54443 245677777777777777777654
No 256
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.84 E-value=1.8e+02 Score=28.48 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccCCC-C-HH--HHHHHHHHHHh
Q 002235 277 RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNSP-N-LD--IRRKTLDIVLE 342 (949)
Q Consensus 277 ~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~d~-d-~~--Ir~~aL~lL~~ 342 (949)
+.++..+.+.| .+++|++.+.+|..|..+.+.-...|. .+...+..++.+. . .. ||.++++++..
T Consensus 41 kea~~~l~krl-~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 41 KEAARALRKRL-KHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 44555555665 457788888888888877765433332 1333344433322 2 22 78888877764
No 257
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=38.30 E-value=53 Score=33.43 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHhHccCc
Q 002235 371 NGEYRQMLIQAIHSCAIKFP 390 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~kf~ 390 (949)
..|..+-+++++..+..+.|
T Consensus 131 ~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 131 QQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp HHHHHHHHHHHHHHH-HSST
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 45677777777777765555
No 258
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.27 E-value=2.3e+02 Score=26.39 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHhh
Q 002235 327 SPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 327 d~d~~Ir~~aL~lL~~l 343 (949)
+.+..||.++++++...
T Consensus 97 ~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 97 DVSTNVREKAIELVQLW 113 (115)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 55788999999887654
No 259
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.05 E-value=3.3e+02 Score=25.98 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 145 PYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 145 pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
++||++.+.++..|+.. ..|+--|++.+-+-+.+ .. ++......+.+|..+
T Consensus 2 ~~i~~kl~~~l~~i~~~-~~P~~Wp~~l~~l~~~~-~~-~~~~~~~~L~iL~~l 52 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKR-DWPQQWPDFLEDLLQLL-QS-SPQHLELVLRILRIL 52 (148)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTTTSTTHHHHHHHHH-HT-THHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-HChhhCchHHHHHHHHh-cc-chhHHHHHHHHHHHH
Confidence 68999999999999984 44655555443332323 22 344444555554443
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.98 E-value=3.3e+02 Score=26.82 Aligned_cols=29 Identities=7% Similarity=0.151 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcC-CchHHHHHHHHHHHcc
Q 002235 241 GKYIKIIISLLNA-PSTAVIYECAGTLVSL 269 (949)
Q Consensus 241 ~~li~~L~~lL~s-~s~aV~~Eaa~~l~~l 269 (949)
+.|++.+..++.. .++.|+-.+...+-.+
T Consensus 83 ~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 83 REFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 3444444444432 2333444444444333
No 261
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=37.92 E-value=2.3e+02 Score=28.46 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=27.9
Q ss_pred HHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 002235 207 LLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTL 266 (949)
Q Consensus 207 L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l 266 (949)
+...++.+.-..+-.-..+++.+.=+.+.+++.+..++-.|...+-++....+.-|+.-+
T Consensus 97 l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 97 LKELLDYLSFLPGDVAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHGGGGGTTTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 333444433223333344444444445555555555555555555555555555554443
No 262
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=37.42 E-value=72 Score=31.64 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=43.3
Q ss_pred ecceeEEEEEEEecChhhhcceEEEEee-cCCeEEeecCCcceeCCCCeeEEEEEE
Q 002235 737 HHYDIVLDVTVINRTKETLQNLCLELAT-MGDLKLVERPQNYTLAPESSKQIKANI 791 (949)
Q Consensus 737 ~~~~ivld~~v~N~t~~tLqNv~vel~t-~g~l~~~~~p~~~~l~p~~~~~i~~~~ 791 (949)
...-+.+++.++|+++..++||.|.=.. .+.+++.+-++...|.|++..+...-|
T Consensus 83 s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 83 SPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 3556789999999999999999986443 245888899999999999976644433
No 263
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.40 E-value=7.9e+02 Score=29.36 Aligned_cols=244 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCchHHHHHHHHHHHccCCC------h
Q 002235 205 NYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPSTAVIYECAGTLVSLSSA------P 273 (949)
Q Consensus 205 ~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~------~ 273 (949)
+.+..+.+....++.-..-..++.+...+..-|... ..+.-++..+....+..|+.|+.+++..+.+. .
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Q ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh----hChhhHHHHHH----hheeccCCCCHHHHHHHHHHHHhhcC
Q 002235 274 TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS----SHRDIMVDLIM----DVLRALNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 274 ~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~----~~p~~l~~~~~----~il~~L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
..+..++..+.+++ .+.++.+|+.+...+..++. .....|.+.+. .++--|.|++++|.+ |-...+.++-
T Consensus 338 ~~~l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~ 415 (533)
T KOG2032|consen 338 SYLLNIALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCY 415 (533)
T ss_pred hhchhHHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcC
Q ss_pred CCcHHHHHHHHHHHHHHhccCCccCCH-HHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Q 002235 346 PRNINEVVLMLKKEVVKTQSGELEKNG-EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIE 424 (949)
Q Consensus 346 ~~Nv~~Iv~~L~kel~~~~~~~~d~~~-e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~ 424 (949)
+.-+..-+..+..+.. |.+. .|+.---..-.++...+|+..-...+...-+++...+.+...++........
T Consensus 416 p~l~rke~~~~~q~~l-------d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 416 PNLVRKELYHLFQESL-------DTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred chhHHHHHHHHHhhhh-------HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHH
Q ss_pred hCccc------HHHHHHHHHHHhcccchHHHHHHHhhhcc
Q 002235 425 MNPKL------RVSIITRLLDNFYQIRAARVCTCALWIIG 458 (949)
Q Consensus 425 ~~p~~------~~~~l~~L~~~l~~i~~~~v~~~~lwiLG 458 (949)
+.-.. ...+...|-....+ ..+++...+.-.+|
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~d-p~pev~~~a~~al~ 527 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRD-PRPEVTDSARKALD 527 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccC-CCchhHHHHHHHhh
No 264
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=36.98 E-value=49 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHh
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIY 159 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~ 159 (949)
.++.+.+++.+.++.+++.|+.++..+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3555666777889999999999988763
No 265
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=35.72 E-value=5.7e+02 Score=31.31 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=76.7
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCccc----------
Q 002235 342 ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVAS---------- 411 (949)
Q Consensus 342 ~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v---------- 411 (949)
...+++ ...+|+.+.+- ... ..+++++..-++-++.|+...+.....+++.|++.+.......
T Consensus 65 s~Ld~~-~~~LV~ail~~--~W~----~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~ 137 (563)
T PF05327_consen 65 SLLDSS-CKQLVEAILSL--NWL----GRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEK 137 (563)
T ss_dssp GGG-SC-CHHHHHHHHT---TGG----GS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH--------
T ss_pred HHhhhH-HHHHHHHHHcC--CCC----CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhh
Confidence 344555 78888877642 332 3467899999999999999889999999999999887543322
Q ss_pred ----HHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHH-----HHHHHhhhcccCCCCCC
Q 002235 412 ----AIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAAR-----VCTCALWIIGEYCQSLS 465 (949)
Q Consensus 412 ----~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~-----v~~~~lwiLGEy~~~~~ 465 (949)
...+-.+|+.|++..|.....+...|...++....+. -.+.++|+. +|++...
T Consensus 138 ~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~P~L~ 199 (563)
T PF05327_consen 138 RREIYERVHDALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYCPELR 199 (563)
T ss_dssp -------HHHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-GGGH
T ss_pred hhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cchHHHH
Confidence 2236688999999999988888888888887755332 355667766 5665443
No 266
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.50 E-value=38 Score=32.52 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV 169 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~ 169 (949)
++..+..++..+.+-|+|++|+|+.+|+-.+-++.. .++....
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~--~G~~~f~ 74 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE--KGNSDFK 74 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh--hCCHHHH
Confidence 556677888888899999999999999999999888 6664433
No 267
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.23 E-value=1.5e+02 Score=32.26 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=51.3
Q ss_pred HHHHhccCC--ChHHHHHHHHHHHHHhcCCCCcccccch----HHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH
Q 002235 135 SVLQNLQHR--HPYIRRNAILAVMAIYKLPQGEQLLVDA----PEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL 208 (949)
Q Consensus 135 ~I~~~L~d~--~pyVRk~A~lal~ki~~l~~~~~li~~~----~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~ 208 (949)
.+++.+.++ +.|||.+|+-|+..+.. .+|...+.. .+++...+ ..++..+...-+..++.+.+...+..+.
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~--~~~~~Re~vi~~f~~ll~~~l-~~~~~~~~~~Lv~~~~dL~~~EL~~~I~ 191 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVH--EGPISREEVIQYFRELLNYFL-ERNPSFLWGSLVADICDLYPEELLPEIR 191 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence 455666665 78999999999999888 666543333 35555545 3334445666667788888888777777
Q ss_pred HHHhh
Q 002235 209 THVDR 213 (949)
Q Consensus 209 ~~l~~ 213 (949)
+.+..
T Consensus 192 ~~f~~ 196 (249)
T PF06685_consen 192 KAFED 196 (249)
T ss_pred HHHHc
Confidence 66654
No 268
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.96 E-value=4.1e+02 Score=30.27 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHhc----------cCCChHHHHHHHHHHHHHhcCCCCcc----cccchHHHHHHHHccCCChh-HHHH
Q 002235 126 TEIIEPLIPSVLQNL----------QHRHPYIRRNAILAVMAIYKLPQGEQ----LLVDAPEMIEKVLSTEQDPS-AKRN 190 (949)
Q Consensus 126 ~el~~~l~~~I~~~L----------~d~~pyVRk~A~lal~ki~~l~~~~~----li~~~~e~l~~~L~~d~d~~-v~~~ 190 (949)
.--+..++|.+..|+ .+.|-.+|.-|+..+.+|.+ ++.. +.++....+.+.|.+...+. ..+.
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~--~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR--KFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH--HcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 334455677777776 33456999999999999888 5443 44444444444454555454 4888
Q ss_pred HHHHHHhcchh
Q 002235 191 AFLMLFTCDQD 201 (949)
Q Consensus 191 Al~~L~~i~~~ 201 (949)
|+.-|..+.++
T Consensus 331 Ai~GL~~lG~~ 341 (343)
T cd08050 331 AIVGLSALGPE 341 (343)
T ss_pred HHHHHHHhCcc
Confidence 88888776643
No 269
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=34.93 E-value=8.3e+02 Score=28.91 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=46.0
Q ss_pred cChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC-CChHHHHH-----HHHHHHHHHccC
Q 002235 217 WGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-SAPTAIRA-----AANTYSQLLLSQ 290 (949)
Q Consensus 217 ~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~-~~~~~l~~-----~a~~li~lll~~ 290 (949)
.+|+..-.-++.+.+++.-.+. -.......+..|..||.|+|+++- .+|..-+. .+..++..+...
T Consensus 15 ~~~l~~~~~l~~L~~~a~l~~~--------~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~ 86 (446)
T PF10165_consen 15 LDPLFTEEGLSTLLKHAGLSES--------DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNY 86 (446)
T ss_pred chhhccHHHHHHHHHhcCCccc--------ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcc
Confidence 3455555555666665532221 011234456779999999998863 23332221 224455555443
Q ss_pred ----CchHHHHHHHHHHHHHHh
Q 002235 291 ----SDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 291 ----~d~nvr~iaL~~L~~l~~ 308 (949)
.++.+.|..++.|--+..
T Consensus 87 ~~~~~~~d~~Fl~~RLLFLlTa 108 (446)
T PF10165_consen 87 SDSSQPSDVEFLDSRLLFLLTA 108 (446)
T ss_pred cccCCChhHHHHHHHHHHHHhc
Confidence 257888888887755543
No 270
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=34.86 E-value=9.7e+02 Score=30.23 Aligned_cols=106 Identities=18% Similarity=0.127 Sum_probs=68.7
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh-Ch----h---hHHHHHHh--hee
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS-HR----D---IMVDLIMD--VLR 323 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~-~p----~---~l~~~~~~--il~ 323 (949)
.+++..-+|+.-+-.+...|.+.+.++..+.. +.+++.+||..|++|.+.... +. . ++..-+-. -+.
T Consensus 17 vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~---~ts~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~q 93 (980)
T KOG2021|consen 17 VDSATKQQAIEYLNQIKSSPNAWEICIELLIN---ETSNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQ 93 (980)
T ss_pred ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh---hcccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887778777766665544 337789999999999887652 21 1 11111111 123
Q ss_pred ccCCC----CHHHHHHHHHHH---HhhcCCCcHHHHHHHHHHHHHH
Q 002235 324 ALNSP----NLDIRRKTLDIV---LELITPRNINEVVLMLKKEVVK 362 (949)
Q Consensus 324 ~L~d~----d~~Ir~~aL~lL---~~l~~~~Nv~~Iv~~L~kel~~ 362 (949)
.+.+. +..|+.++-.++ +-+-=+.+|......|+..+..
T Consensus 94 vl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~ 139 (980)
T KOG2021|consen 94 VLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQV 139 (980)
T ss_pred HhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 46666 788998765544 4445677788888777766554
No 271
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.70 E-value=9.4e+02 Score=31.23 Aligned_cols=230 Identities=14% Similarity=0.155 Sum_probs=119.2
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHHhC------CCCC--CchhHHHHHhhcCCC--CcchhHH-------HHHHH
Q 002235 17 AIANEIKEALE-GNDVPAKVDAMKKAIMLLLN------GETL--PQLFITIVRYVLPSE--DHTIQKL-------LLLYL 78 (949)
Q Consensus 17 ~~~~eir~~L~-s~~~~~k~~aL~kli~l~~~------G~d~--s~lf~~Vik~l~~s~--d~~lKrL-------~YL~l 78 (949)
.+.+++.-.+. +++.-.|.+|.++|..-.+. |.+. +.-|.+.++.++.++ |+.++-+ .||.
T Consensus 551 ~~~~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~lp~~~~l~- 629 (875)
T PRK14015 551 YSDEDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTLPSEAELA- 629 (875)
T ss_pred CCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccCCCHHHHH-
Confidence 45677777777 55666777777766543322 6654 778888888776543 2333321 1121
Q ss_pred HHHhhcCCCCCCCchHHHHHHH--------HHhhc-------CCCCH-----------HHHHHHHHHhhcCCchhhHHHH
Q 002235 79 EIIDKTDAKGRVLPEMILICQN--------LRNNL-------QHPNE-----------YIRGVTLRFLCRLNETEIIEPL 132 (949)
Q Consensus 79 ~~~~~~~~d~~l~~e~iLv~Ns--------L~KDL-------~~~N~-----------~iR~~ALr~L~~I~~~el~~~l 132 (949)
..+...|++ .+.-+-.. ++.++ ....+ -.|..+|..|+....++..+.+
T Consensus 630 ~~~~~~d~~-----~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~~~ 704 (875)
T PRK14015 630 EQMEVIDPD-----AIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAELA 704 (875)
T ss_pred HhccCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 122222221 01111122 22222 22221 2455667777776666655544
Q ss_pred HHHHH------------HhccCCChHHHHHHHHHHHHHhcCCCCcccccchHH------------HHHHHHc----cCCC
Q 002235 133 IPSVL------------QNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE------------MIEKVLS----TEQD 184 (949)
Q Consensus 133 ~~~I~------------~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e------------~l~~~L~----~d~d 184 (949)
..... .+|.+.+.--|..|+...+.-++ .+|-++..|.. .+++++. +-++
T Consensus 705 ~~~~~~a~~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~--~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~n 782 (875)
T PRK14015 705 EAQFDQADNMTDRLAALSALVNADLPERDEALADFYDRWK--DDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKN 782 (875)
T ss_pred HHHHhhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCC
Confidence 33333 23333344467777777777777 67766666633 3333221 1134
Q ss_pred hhHHHHHHHHHHhcchh-------hHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC
Q 002235 185 PSAKRNAFLMLFTCDQD-------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP 254 (949)
Q Consensus 185 ~~v~~~Al~~L~~i~~~-------~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~ 254 (949)
|.-.++-+..+..-++- ...++|...+-++...+|-.-..+++.+.+.-+.+|.-...+...|..++...
T Consensus 783 pn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~ 859 (875)
T PRK14015 783 PNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQALMRAALERIAALP 859 (875)
T ss_pred CcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCc
Confidence 55555555555433321 13555555555555666666666666666666666665666666666665553
No 272
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=33.03 E-value=1e+03 Score=29.38 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH--------HHHHHhheecc
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM--------VDLIMDVLRAL 325 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l--------~~~~~~il~~L 325 (949)
.+..=.-+|-+.+.++...|.+... |.. .|..+.-|.-+|+||..|.++....-.++ ..++..++ .-
T Consensus 26 g~g~~q~qAq~iLtkFq~~PdaWtk-ad~---IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv~~v-I~ 100 (1053)
T COG5101 26 GDGRKQEQAQRILTKFQELPDAWTK-ADY---ILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLV-IE 100 (1053)
T ss_pred CCchhHHHHHHHHHHHHhCchHHHH-HHH---HHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHHHHH-HH
Confidence 3334455666777777666766543 233 23457778999999999999887533332 23333332 22
Q ss_pred CCCCHHHHHHHHHHHHh-------h---cCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc-CcccHH
Q 002235 326 NSPNLDIRRKTLDIVLE-------L---ITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK-FPEVAS 394 (949)
Q Consensus 326 ~d~d~~Ir~~aL~lL~~-------l---~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k-f~~~~~ 394 (949)
.+.|..++.+-=.+|-+ + -=++|+...+.+|..- ++ .+-++-+.-..-+..+.+. |-=.++
T Consensus 101 ~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~-S~-------~s~~vCeNnmivLklLsEEvFdfSae 172 (1053)
T COG5101 101 KSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINV-SQ-------ISMEVCENNMIVLKLLSEEVFDFSAE 172 (1053)
T ss_pred hcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhh-cc-------chHHHHhccHHHHHHhHHHHHhccHH
Confidence 44565666543222222 1 2356777777665531 11 1222332222223333321 222222
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHh--CcccHHHHHHHHHHHhccc
Q 002235 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIEM--NPKLRVSIITRLLDNFYQI 444 (949)
Q Consensus 395 ~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~--~p~~~~~~l~~L~~~l~~i 444 (949)
.+-..=-..|++.-.--..++..+.+.+++. .|.+-+..++.|..+++-+
T Consensus 173 qmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wi 224 (1053)
T COG5101 173 QMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWI 224 (1053)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhC
Confidence 2222222333332222334445555555553 3444555566666665544
No 273
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.01 E-value=1.2e+03 Score=29.74 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHcCCch-HHHHHHHHHHHccCCC----hH----HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 002235 239 EKGKYIKIIISLLNAPST-AVIYECAGTLVSLSSA----PT----AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (949)
Q Consensus 239 ~~~~li~~L~~lL~s~s~-aV~~Eaa~~l~~l~~~----~~----~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~ 309 (949)
.+..++..+.++|+..++ .|++++++++...-.+ ++ .+..+-..+.+++-.-+.-..|..+|..|..+..+
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 456677888888988855 4889999998654211 11 12223333334443334445788888888877766
Q ss_pred ChhhHHHHHHhhe
Q 002235 310 HRDIMVDLIMDVL 322 (949)
Q Consensus 310 ~p~~l~~~~~~il 322 (949)
-...+.++...|.
T Consensus 603 ~~e~I~P~~~~iv 615 (978)
T KOG1993|consen 603 VSEHIAPYASTIV 615 (978)
T ss_pred HHHhhhHHHHHHH
Confidence 5444445444433
No 274
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=31.03 E-value=1.4e+02 Score=28.12 Aligned_cols=53 Identities=9% Similarity=0.237 Sum_probs=32.3
Q ss_pred EEEEEEEecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEec
Q 002235 742 VLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSS 795 (949)
Q Consensus 742 vld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~s 795 (949)
...+-|.|++++..+ +.+.+....++++....+..+++|++...+.+.++...
T Consensus 34 ~Y~lkl~Nkt~~~~~-~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRT-YTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEE-SSS-EE-EEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEECCCCCEE-EEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 356778999987644 56666554578885554778899999999999888864
No 275
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.70 E-value=3.3e+02 Score=26.27 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=6.9
Q ss_pred CCChhHHHHHHHHHHh
Q 002235 182 EQDPSAKRNAFLMLFT 197 (949)
Q Consensus 182 d~d~~v~~~Al~~L~~ 197 (949)
.++|.++..|+.+|..
T Consensus 48 ~~n~~vql~AL~lLd~ 63 (133)
T cd03561 48 YGNPHVQLLALTLLEL 63 (133)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3344444444444433
No 276
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=30.43 E-value=1.2e+03 Score=29.35 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHH---hCcccHHHHHHHHHHHhcccch-----HHHHHHHhhhcccC
Q 002235 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIE---MNPKLRVSIITRLLDNFYQIRA-----ARVCTCALWIIGEY 460 (949)
Q Consensus 395 ~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~---~~p~~~~~~l~~L~~~l~~i~~-----~~v~~~~lwiLGEy 460 (949)
..+++|+++|+..++.++..+...++++-. +.+.+..+++..|++.|.+-.. .+..++++..+-|.
T Consensus 566 kgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni 639 (717)
T KOG1048|consen 566 KGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI 639 (717)
T ss_pred cCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence 457889999999999999999999999853 3444556789999999986433 56677766666553
No 277
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=30.27 E-value=8.2e+02 Score=27.45 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred CCchHHHHHHHHHHHHHHh-hCh---hhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhcc
Q 002235 290 QSDNNVKLIVLDRLNELRS-SHR---DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQS 365 (949)
Q Consensus 290 ~~d~nvr~iaL~~L~~l~~-~~p---~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~ 365 (949)
.....||..-|+.+.+..- -.+ ..+.+.+..++..+.|++.++..+++.++-.+.+.-+-+...+.|-.-+.+
T Consensus 108 ~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~--- 184 (307)
T PF04118_consen 108 YASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT--- 184 (307)
T ss_pred HHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---
Confidence 3445566666665554332 122 123445555666677777777777777776665443333333333322221
Q ss_pred CCccCCHHHHHHHHHHHHH-hH---------------ccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh----
Q 002235 366 GELEKNGEYRQMLIQAIHS-CA---------------IKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM---- 425 (949)
Q Consensus 366 ~~~d~~~e~r~~lv~aI~~-la---------------~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~---- 425 (949)
+++.|.-++.-+.+ +. .-.++...-++..+...|.|++-.+...+.+++..-+--
T Consensus 185 -----sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~ 259 (307)
T PF04118_consen 185 -----SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPV 259 (307)
T ss_pred -----CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcc
Confidence 22333333222211 11 112344556667777777776544444555544433211
Q ss_pred -----CcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCC
Q 002235 426 -----NPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQ 462 (949)
Q Consensus 426 -----~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~ 462 (949)
.++-+...+...+..+-.=+.+--+|.-.|++|.-..
T Consensus 260 ~~~~~~~~d~~~Lv~a~l~~~lrrDmSLnRRl~~WLlG~~~~ 301 (307)
T PF04118_consen 260 LQSLLSPEDKELLVMAALKVVLRRDMSLNRRLWNWLLGPEDD 301 (307)
T ss_pred hhhhCCHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHCCCCCC
Confidence 1222333444444443211124458899999997543
No 278
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=30.16 E-value=1.3e+03 Score=29.77 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 129 IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 129 ~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
+-.++.++..-+.+.+|.+|++|+.++-.+..
T Consensus 41 l~dlV~sl~~yl~s~n~~~Rakai~llsqvl~ 72 (1030)
T KOG1967|consen 41 LLDLVTSLGTYLTSDNPEERAKAIELLSQVLS 72 (1030)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34456777888889999999999988877665
No 279
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=29.73 E-value=4.7e+02 Score=25.72 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002235 148 RRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (949)
Q Consensus 148 Rk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~ 200 (949)
-..+.+-+.-+.. ..|.--.++...+.+-| ...||.|+..|+.+|..|-.
T Consensus 18 dw~~ileicD~In--~~~~~~k~a~rai~krl-~~~n~~v~l~AL~LLe~~vk 67 (139)
T cd03567 18 DWEAIQAFCEQIN--KEPEGPQLAVRLLAHKI-QSPQEKEALQALTVLEACMK 67 (139)
T ss_pred CHHHHHHHHHHHH--cCCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 3344455544444 34433333444444444 56667777777666655543
No 280
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.68 E-value=4.8e+02 Score=25.62 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=6.8
Q ss_pred CChhHHHHHHHHHHh
Q 002235 183 QDPSAKRNAFLMLFT 197 (949)
Q Consensus 183 ~d~~v~~~Al~~L~~ 197 (949)
+|+.|+..|+.+|..
T Consensus 51 ~n~~v~l~aL~LLe~ 65 (141)
T cd03565 51 KNHKEVMLTLTVLET 65 (141)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344444444444433
No 281
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=29.63 E-value=88 Score=21.36 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 002235 147 IRRNAILAVMAI 158 (949)
Q Consensus 147 VRk~A~lal~ki 158 (949)
||+.|+.+++++
T Consensus 1 VR~~Aa~aLg~i 12 (27)
T PF03130_consen 1 VRRAAARALGQI 12 (27)
T ss_dssp HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHc
Confidence 445555555444
No 282
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=29.40 E-value=6.8e+02 Score=26.20 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred hH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHH---------------HHHHHhccCCChHHHHHHHHHHH
Q 002235 93 EM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLI---------------PSVLQNLQHRHPYIRRNAILAVM 156 (949)
Q Consensus 93 e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~---------------~~I~~~L~d~~pyVRk~A~lal~ 156 (949)
|. ++++.-+.+.-...++--.....+.+-.+...+++..+. +.+.+...+.|.++||.|+++..
T Consensus 61 E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l 140 (208)
T cd07064 61 EYQYVAIDLLRKYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEFEPVMDEWSTDENFWLRRTAILHQL 140 (208)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHH
Q ss_pred HHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc---chhhHHHHHHHHHhhcCccChhHHHHHHHHH
Q 002235 157 AIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC---DQDRAINYLLTHVDRVSEWGELLQMVVLELI 229 (949)
Q Consensus 157 ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i---~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll 229 (949)
+.-+ ... .....+++...+ .|++-.|+-+.--+|-++ +|+....||.+....++ +...-..++.|
T Consensus 141 ~~~~--~~~--~~~l~~~~~~~~-~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~~~~m~---~~s~rea~k~l 208 (208)
T cd07064 141 KYKE--KTD--TDLLFEIILANL-GSKEFFIRKAIGWALREYSKTNPDWVRDFVAAHKLRLS---PLSRREALKYL 208 (208)
T ss_pred HHHH--ccC--HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhccCHHHHHHHHHHhhhhcC---hhHHHHHHhhC
No 283
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=29.12 E-value=2.7e+02 Score=24.55 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=41.2
Q ss_pred EecceeEEEEEEEecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEecCCcce
Q 002235 736 VHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGV 800 (949)
Q Consensus 736 v~~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~e~g~ 800 (949)
.-...+.+.+.|.|+=.....++.|.+.-.|... .......|+|++..++.+.++.. ..|.
T Consensus 16 ~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~--~~~~i~~L~~g~~~~v~~~~~~~--~~G~ 76 (101)
T PF07705_consen 16 VPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV--STVTIPSLAPGESETVTFTWTPP--SPGS 76 (101)
T ss_dssp ETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE--EEEEESEB-TTEEEEEEEEEE-S--S-CE
T ss_pred cCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee--ccEEECCcCCCcEEEEEEEEEeC--CCCe
Confidence 3467788999999997777999999998766543 33333568899988888777765 4554
No 284
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=29.04 E-value=1e+03 Score=28.09 Aligned_cols=212 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcC-------CCCCCCchHHHHHHHHHh--hcCCC----CHHHHHHHHH
Q 002235 52 PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTD-------AKGRVLPEMILICQNLRN--NLQHP----NEYIRGVTLR 118 (949)
Q Consensus 52 s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~-------~d~~l~~e~iLv~NsL~K--DL~~~----N~~iR~~ALr 118 (949)
+.+-+..++.+-++-++.++-|.+-.+--.++.+ .+| + +.=..|-++| |+.+. |.+=|+.-+-
T Consensus 222 ~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~g-l---~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~ 297 (604)
T KOG4500|consen 222 CSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNG-L---LEDSIDLVRNMKDFTKKTDMLNLFKRIAELD 297 (604)
T ss_pred chHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcc-h---HHHHHHHHHhcccccchHHHHHHHHhhhhHh
Q ss_pred HhhcCCchh-----hHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc----cchHHHHHHHHcc----CCCh
Q 002235 119 FLCRLNETE-----IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL----VDAPEMIEKVLST----EQDP 185 (949)
Q Consensus 119 ~L~~I~~~e-----l~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li----~~~~e~l~~~L~~----d~d~ 185 (949)
+|=..++.+ .-+.+...+..++.+.+.-.--.++++++.+.+ .+...+ .++.+.+-.+|-. |.|.
T Consensus 298 vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR--~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 298 VLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR--RDDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred hhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q ss_pred hHHHHHHHHHHhc---chhhH----HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhH------HHHHHHHHHHHc
Q 002235 186 SAKRNAFLMLFTC---DQDRA----INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK------GKYIKIIISLLN 252 (949)
Q Consensus 186 ~v~~~Al~~L~~i---~~~~a----i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~------~~li~~L~~lL~ 252 (949)
.++.+++++|.++ .++++ -..-..++.++....|-.|-+++..++.....-+... ..+++-|..|-.
T Consensus 376 ~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsk 455 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSK 455 (604)
T ss_pred hhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhh
Q ss_pred CCchH-HHHHHHHHHHcc
Q 002235 253 APSTA-VIYECAGTLVSL 269 (949)
Q Consensus 253 s~s~a-V~~Eaa~~l~~l 269 (949)
+++.+ |.-|.-|++.-+
T Consensus 456 s~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 456 SPDFAGVAGESNRLLLGL 473 (604)
T ss_pred CCccchhhhhhhHHHHHH
No 285
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=28.17 E-value=1.1e+03 Score=33.90 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=55.6
Q ss_pred HccCCchHHHHHHHHHHHHHHhhChh--------h--HHHHHHhheec-cCCCCHHHHHHHHHHHH-----hhcCCCcHH
Q 002235 287 LLSQSDNNVKLIVLDRLNELRSSHRD--------I--MVDLIMDVLRA-LNSPNLDIRRKTLDIVL-----ELITPRNIN 350 (949)
Q Consensus 287 ll~~~d~nvr~iaL~~L~~l~~~~p~--------~--l~~~~~~il~~-L~d~d~~Ir~~aL~lL~-----~l~~~~Nv~ 350 (949)
+++..|.++|-.+..+...+.+..+. + ++.....++.| +.|.|+.||.+.+.-+. .++-+.++.
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ~~~lr 568 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQPDLLR 568 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcCchhHH
Confidence 34556677888777777666554333 3 44444444444 56777778877776665 566666666
Q ss_pred HHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHc
Q 002235 351 EVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI 387 (949)
Q Consensus 351 ~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~ 387 (949)
..+..+. +..-.++..++..+|.++.
T Consensus 569 ~~~~al~-----------~~~l~~~~~~~~~ig~l~~ 594 (2341)
T KOG0891|consen 569 LLFIALH-----------DENFAIQELATVIIGRLSS 594 (2341)
T ss_pred HHHHHhh-----------hhhhhhHHhHHhhcccccc
Confidence 5444332 2344677788888887776
No 286
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.80 E-value=1.5e+03 Score=29.81 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=85.1
Q ss_pred ccChhHHHHHHHHHHHhhhcCchh--HHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC---hHHHHHHH----HHHHHH
Q 002235 216 EWGELLQMVVLELIRKVCRTNKGE--KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA---PTAIRAAA----NTYSQL 286 (949)
Q Consensus 216 ~~~p~~q~~il~ll~~~~~~~p~~--~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~---~~~l~~~a----~~li~l 286 (949)
+-.|-..+.-++-|+..+..-|+. ...|+..+-=.|...+..|+..|.++|..|... ...++... ..++.+
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 344555666666666666555542 234555555556667889999999999888543 22333333 334444
Q ss_pred HccCCchHHHHHHHHHHHHHHhhChhhHH-HHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHH
Q 002235 287 LLSQSDNNVKLIVLDRLNELRSSHRDIMV-DLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINE 351 (949)
Q Consensus 287 ll~~~d~nvr~iaL~~L~~l~~~~p~~l~-~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~ 351 (949)
...+-+..||-++|..+..+ ..+.++. ..+.-+..++.|.++.+++-|-..+..-+.+.+.+.
T Consensus 378 adrd~~~~Vrav~L~~~~~~--~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~ 441 (1048)
T KOG2011|consen 378 ADRDRNVSVRAVGLVLCLLL--SSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANS 441 (1048)
T ss_pred HhhhcchhHHHHHHHHHHHH--hcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccch
Confidence 43445566787777776554 3455553 344456678889999999999999887766655443
No 287
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=27.74 E-value=1.3e+02 Score=32.42 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhc-CCCcHHHH--------HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH------HHHH
Q 002235 333 RRKTLDIVLELI-TPRNINEV--------VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA------STVV 397 (949)
Q Consensus 333 r~~aL~lL~~l~-~~~Nv~~I--------v~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~------~~~l 397 (949)
++.||++|.||+ .++||+-| ++.|...+.++... ..+.-+|..+|--++.+|.--...+ ..++
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Q ss_pred HHHHHHHhC
Q 002235 398 HLLMDFLGD 406 (949)
Q Consensus 398 ~~L~~lL~~ 406 (949)
..|+.|+.+
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
No 288
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=27.48 E-value=5.1e+02 Score=32.16 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=24.4
Q ss_pred HHHHHHHhHccCccc-HHHHHHHHHHHHhCCC
Q 002235 378 LIQAIHSCAIKFPEV-ASTVVHLLMDFLGDSN 408 (949)
Q Consensus 378 lv~aI~~la~kf~~~-~~~~l~~L~~lL~~~~ 408 (949)
+-..+.++..+||.. ..|+++.++++++...
T Consensus 147 l~~~l~ri~t~~ps~Fl~~~l~~i~~~~~~~~ 178 (633)
T PF08568_consen 147 LQIVLKRIQTKYPSRFLAMALSAILNFLKNNP 178 (633)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhcc
Confidence 344446777889987 7899999999998765
No 289
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=27.42 E-value=4.7e+02 Score=31.37 Aligned_cols=123 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-------------HHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHH
Q 002235 329 NLDIRRKTLDIVLELITPRNINEVVLMLKKE-------------VVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAST 395 (949)
Q Consensus 329 d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~ke-------------l~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~ 395 (949)
++.--++.+.=|..-+|.+|+..|+.+|..+ ++..+. .+-|--....-+.-+-.|||+..+.
T Consensus 160 nWEalkksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~a-----sp~ft~vyaALvAviNskfP~IgEl 234 (739)
T KOG2140|consen 160 NWEALKKSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAA-----SPGFTPVYAALVAVINSKFPQIGEL 234 (739)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhc-----CCCCcHHHHHHHHHHccCCchHHHH
Q ss_pred HHHHHHHHHhC----CCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhh
Q 002235 396 VVHLLMDFLGD----SNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWI 456 (949)
Q Consensus 396 ~l~~L~~lL~~----~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwi 456 (949)
.+.-|+-.++. +.....-.++.||..++.+.-.----+++.|.-+|+.-+...+..++.++
T Consensus 235 LlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe~PTddSvevaI~fl 299 (739)
T KOG2140|consen 235 LLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQQVAHEIVALEILTLLLERPTDDSVEVAIAFL 299 (739)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
No 290
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.64 E-value=4.7e+02 Score=25.32 Aligned_cols=64 Identities=13% Similarity=0.282 Sum_probs=31.9
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccCCCC--HHHHHHHHHHHHh
Q 002235 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNSPN--LDIRRKTLDIVLE 342 (949)
Q Consensus 278 ~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~d~d--~~Ir~~aL~lL~~ 342 (949)
.++..+.+.| .+++|++.+.+|..|..+...-..-|. .+...+..+++++. +.||.+.++++..
T Consensus 37 ~a~r~l~krl-~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 37 DAVRLLKKRL-NNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 3444444444 356666666666666666554221111 12222333333322 2378888877764
No 291
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=26.60 E-value=4.9e+02 Score=23.60 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=40.5
Q ss_pred EEecceeEEEEEEEecChhh--hcceEEEEee-cCCeEEeecC----CcceeCCCCeeEEEEEEEEecCCcceeeeeEEE
Q 002235 735 TVHHYDIVLDVTVINRTKET--LQNLCLELAT-MGDLKLVERP----QNYTLAPESSKQIKANIKVSSTETGVIFGNIVY 807 (949)
Q Consensus 735 ~v~~~~ivld~~v~N~t~~t--LqNv~vel~t-~g~l~~~~~p----~~~~l~p~~~~~i~~~~kv~s~e~g~ifg~i~y 807 (949)
++|.|.|.+. |..+.+ |..=.-.+.. .|..+.|+-+ +.+.|.|++ .-.|.+.-.-+++.|..-|+..|
T Consensus 12 y~f~Y~I~I~----N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe-~f~Y~S~~~l~t~~G~M~G~y~~ 86 (90)
T PF04379_consen 12 YVFAYRIRIE----NHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGE-SFEYTSGCPLSTPSGSMEGSYTM 86 (90)
T ss_dssp EEEEEEEEEE----E-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTE-EEEEEEEEEESSSEEEEEEEEEE
T ss_pred EEEEEEEEEE----ECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCC-cEEEcCCCCcCCCCEEEEEEEEE
Confidence 5667777665 888775 3222222222 2557777655 446799999 55666666667889998898655
Q ss_pred e
Q 002235 808 E 808 (949)
Q Consensus 808 ~ 808 (949)
.
T Consensus 87 ~ 87 (90)
T PF04379_consen 87 V 87 (90)
T ss_dssp E
T ss_pred E
Confidence 4
No 292
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=26.55 E-value=82 Score=30.19 Aligned_cols=39 Identities=36% Similarity=0.631 Sum_probs=31.4
Q ss_pred EeecCCcceeCCCCeeEEEEEEEEecC-CcceeeeeEEEe
Q 002235 770 LVERPQNYTLAPESSKQIKANIKVSST-ETGVIFGNIVYE 808 (949)
Q Consensus 770 ~~~~p~~~~l~p~~~~~i~~~~kv~s~-e~g~ifg~i~y~ 808 (949)
++..|...+|+|+++..+.+.+++... -.|++.|-+.|.
T Consensus 80 ~v~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 80 LVKIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred hccCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 344445578999999999999999753 799999998765
No 293
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.26 E-value=9.7e+02 Score=33.68 Aligned_cols=93 Identities=8% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCchHHHHHHHHHHHccC----CChH-----HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhhee
Q 002235 253 APSTAVIYECAGTLVSLS----SAPT-----AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR 323 (949)
Q Consensus 253 s~s~aV~~Eaa~~l~~l~----~~~~-----~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~ 323 (949)
+.+..|.+.|+..|-.++ ...+ .-+....++...+....+..+|-.+++.+.+|...+..-+..=...|+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 445678888888765542 1111 1224556776667677788999999999999887654444332222333
Q ss_pred c----cCCCCHHHHHHHHHHHHhhcC
Q 002235 324 A----LNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 324 ~----L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
+ ..++...|-+.|.+++-.+++
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3 346778888888888776543
No 294
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.04 E-value=4.6e+02 Score=24.05 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=9.1
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHH
Q 002235 334 RKTLDIVLELITPRNINEVVLML 356 (949)
Q Consensus 334 ~~aL~lL~~l~~~~Nv~~Iv~~L 356 (949)
++.-.++..-.+..+.++.+..+
T Consensus 3 k~i~~~l~ey~~~~d~~ea~~~l 25 (113)
T PF02847_consen 3 KKIFSILMEYFSSGDVDEAVECL 25 (113)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH
Confidence 33333444333334444444433
No 295
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=24.75 E-value=37 Score=31.72 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=14.8
Q ss_pred HHHhccCCChHHHHHHHHHHHHHh
Q 002235 136 VLQNLQHRHPYIRRNAILAVMAIY 159 (949)
Q Consensus 136 I~~~L~d~~pyVRk~A~lal~ki~ 159 (949)
+..++.|+++.||-.|+..+.+++
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHcCCChhHHHHHHHHHHHhC
Confidence 345777788888877776655543
No 296
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.68 E-value=3.2e+02 Score=32.85 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhcc----------CCChHHHHHHHHHHHHHhcCCCCcccccc----hHHHHHHHHccC-CChhHHHHH
Q 002235 127 EIIEPLIPSVLQNLQ----------HRHPYIRRNAILAVMAIYKLPQGEQLLVD----APEMIEKVLSTE-QDPSAKRNA 191 (949)
Q Consensus 127 el~~~l~~~I~~~L~----------d~~pyVRk~A~lal~ki~~l~~~~~li~~----~~e~l~~~L~~d-~d~~v~~~A 191 (949)
-.+..|+|+|..|+. |+|-.+|.-|+.-+.+|++ .+.+.... +...+.+.+.+. ++.++.|.|
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k--~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICK--NFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 344556666666654 5677899999999999999 67766543 334444444343 677889999
Q ss_pred HHHHHhcchh
Q 002235 192 FLMLFTCDQD 201 (949)
Q Consensus 192 l~~L~~i~~~ 201 (949)
+.-|.++..+
T Consensus 362 i~gL~~lg~~ 371 (576)
T KOG2549|consen 362 IAGLSELGHE 371 (576)
T ss_pred HHHHHHhhhh
Confidence 9888887664
No 297
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=24.61 E-value=2.7e+02 Score=33.47 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=72.8
Q ss_pred HHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhc
Q 002235 378 LIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWII 457 (949)
Q Consensus 378 lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiL 457 (949)
+++.+...+++-|+...-.+..|+-+|....+....-+-....-|.++.|+.-+..+..|+-.+.|-++..+.-.++-.|
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~i 261 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEI 261 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 55556666777777666666777777765543333223344445566788888889999999998888889999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHhCCCCC
Q 002235 458 GEYCQSLSEVENGIATIKQCLGELPF 483 (949)
Q Consensus 458 GEy~~~~~~~~~~~~~i~~~l~~~p~ 483 (949)
..|++... ...++.++.+....|-
T Consensus 262 a~~~pv~l--~~~~E~l~e~~~~~p~ 285 (851)
T KOG3723|consen 262 AVYEPVAL--NSFLEMLKEIGERFPY 285 (851)
T ss_pred HhcCccch--hhHHHHHHHHHHhCCC
Confidence 99988654 3456666666665554
No 298
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.58 E-value=1.1e+02 Score=32.18 Aligned_cols=91 Identities=16% Similarity=0.310 Sum_probs=50.9
Q ss_pred cCCcceeeeeEEEecCCccccceEEecceeeccccccccccCChhhhHHhhcccCcCcEEEeeccCCCHHHHHHHHHHHc
Q 002235 795 STETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKST 874 (949)
Q Consensus 795 s~e~g~ifg~i~y~~~~~~~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efewEnk~~v~~~~~~l~~~l~~li~~t 874 (949)
|.+||..||.+++.. +..+...+|++ +|..-+. .=+-|.. .-.....+.+.|.+.|
T Consensus 12 s~eTG~~FG~iV~~r-~~~~kplIQiE----------rpg~~dG-------~ii~Wn~------~~~~~~~~a~~Ls~~l 67 (215)
T PF09890_consen 12 SKETGHTFGEIVAGR-ANGKKPLIQIE----------RPGESDG-------TIIPWNK------KAEEVEPIAEKLSELL 67 (215)
T ss_pred CccchhhhhHHHHhc-ccCCCCEEEEe----------cCCCCCC-------eEEeccc------cccchHHHHHHHHHHh
Confidence 779999999998765 22345566775 3332111 0012331 1223567888999999
Q ss_pred CCeecCC-CCccCCCchHHH-HHhhccccc----CceEEEE
Q 002235 875 NMKCLTA-PSALDGDCGFLA-ANLYAKSVF----GEDALVN 909 (949)
Q Consensus 875 nm~~l~~-~~~~~~~~~~~~-~nL~~~s~~----ge~al~n 909 (949)
||.+.+| +..++....+.. -+.-.|.+. ||.+++|
T Consensus 68 ~l~i~~p~~~~i~~~~~~~~~~~~v~R~i~Gv~pGE~I~VN 108 (215)
T PF09890_consen 68 GLKIVRPVENPISSGENCWEGKGRVFRKISGVSPGENIFVN 108 (215)
T ss_pred CCCccCcccccccCccccccCCceEEEEEeccCCCCCEEEe
Confidence 9998776 332322221111 134445554 5777777
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.29 E-value=9.5e+02 Score=26.18 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHh--hChhhHHHHHHhheecc---CCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCc
Q 002235 294 NVKLIVLDRLNELRS--SHRDIMVDLIMDVLRAL---NSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGEL 368 (949)
Q Consensus 294 nvr~iaL~~L~~l~~--~~p~~l~~~~~~il~~L---~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~ 368 (949)
++|+.+|+.|....- ..++-+..+...+ +.+ ..+.+.+...+|+++.+..+...+++++..+... ++
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l-~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~----~~--- 152 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNAL-RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS----VD--- 152 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh----cc---
Confidence 677777777765432 2333333322211 122 2235778889999999966666666666555432 21
Q ss_pred cCCHHHHHHHHHHHHHhHccCcccHHHHHHHHH-HHHhCCCcccHHHHHHHHHHHHH-hCcc--cH--HHHHHHHHHHhc
Q 002235 369 EKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLM-DFLGDSNVASAIDVIIFVREIIE-MNPK--LR--VSIITRLLDNFY 442 (949)
Q Consensus 369 d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~-~lL~~~~~~v~~e~i~~l~~ii~-~~p~--~~--~~~l~~L~~~l~ 442 (949)
-...--..++..|+.+..+-|..+..+++.++ .-+..+.+. .-+...+-+.++. +.++ .+ -..+..+++.++
T Consensus 153 -~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~ 230 (278)
T PF08631_consen 153 -HSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE 230 (278)
T ss_pred -cccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH
Confidence 12233456778888888877766666665444 333333332 3333222222332 2222 12 234555555433
Q ss_pred cc-----c--hHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHh
Q 002235 443 QI-----R--AARVCTCALWIIGEYCQSLSEVENGIATIKQCL 478 (949)
Q Consensus 443 ~i-----~--~~~v~~~~lwiLGEy~~~~~~~~~~~~~i~~~l 478 (949)
.. . ......+++|=-|.-.....+...+.+...-++
T Consensus 231 ~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 231 HSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 21 1 124578899999988888888777777665443
No 300
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.16 E-value=1e+03 Score=26.63 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHhh--------ChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhh
Q 002235 274 TAIRAAANTYSQLLLSQ--SDNNVKLIVLDRLNELRSS--------HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 274 ~~l~~~a~~li~lll~~--~d~nvr~iaL~~L~~l~~~--------~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l 343 (949)
..+.....+.+.++.++ .-|+.|-.-...|..+.+. .|..+......++-.+.++++.|...+|+++..+
T Consensus 113 ~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 113 QILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 33444445555555321 2355555444444444443 3445556666677778999999999999999876
Q ss_pred cC
Q 002235 344 IT 345 (949)
Q Consensus 344 ~~ 345 (949)
.+
T Consensus 193 l~ 194 (319)
T PF08767_consen 193 LN 194 (319)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 301
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=23.92 E-value=8.6e+02 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=19.6
Q ss_pred HhhcCCCCHHHHHHHHHHhhcCCc--hhhHHH
Q 002235 102 RNNLQHPNEYIRGVTLRFLCRLNE--TEIIEP 131 (949)
Q Consensus 102 ~KDL~~~N~~iR~~ALr~L~~I~~--~el~~~ 131 (949)
..||. |+--|..||.-|++-++ |++.+.
T Consensus 3 i~~L~--~~~~Re~Al~eLsk~r~~~~~La~~ 32 (262)
T PF04078_consen 3 ILDLC--NPETRENALLELSKKRESFPDLAPL 32 (262)
T ss_dssp HHHTS--SHHHHHHHHHHHHHTCCC-TTHHHH
T ss_pred hHHhc--CcchHHHHHHHHHHhhhcccchhHH
Confidence 45665 44559999999999875 555443
No 302
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.81 E-value=1e+02 Score=22.28 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHccC
Q 002235 243 YIKIIISLLNAPSTAVIYECAGTLVSLS 270 (949)
Q Consensus 243 li~~L~~lL~s~s~aV~~Eaa~~l~~l~ 270 (949)
.++.|.++|++.++.++.+|+.+|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3566777777778888888888887653
No 303
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=23.80 E-value=1.6e+03 Score=30.78 Aligned_cols=126 Identities=15% Similarity=0.220 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhcchh------------hHHHHHHHHHhhcCccChhHH-----HHHHHHHHHhhhcCchh-----HHHH
Q 002235 186 SAKRNAFLMLFTCDQD------------RAINYLLTHVDRVSEWGELLQ-----MVVLELIRKVCRTNKGE-----KGKY 243 (949)
Q Consensus 186 ~v~~~Al~~L~~i~~~------------~ai~~L~~~l~~i~~~~p~~q-----~~il~ll~~~~~~~p~~-----~~~l 243 (949)
+...+.+.+|+.+..| -|+.||+..|.--.. +..+- --||+.+..+....... ....
T Consensus 453 sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~q-s~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 453 STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQ-SNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCC-cchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 4455566667665432 257788777642110 11100 12444444443322211 1234
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHccCC-ChHH---HH-HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSLSS-APTA---IR-AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD 312 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~---l~-~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~ 312 (949)
+..|.+.|++.+=.|+-.++.+|++|+. .|+. +. .-|..++.-|+.++..-+-.-....|..+....|.
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 4555666666777799999999999974 3332 22 23445555555444333333333344444433343
No 304
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=23.72 E-value=7.5e+02 Score=24.79 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHH
Q 002235 335 KTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLM 401 (949)
Q Consensus 335 ~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~ 401 (949)
+.+.-+++=.++.|++.++.+|.+.... + +.+....+++.|...+..-|.....+..++.
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~------~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~ 61 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWS------D-DPETLKEIVKLIFEKAVEEPNFSPLYARLCA 61 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHH------S-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhh------c-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHH
Confidence 4556666667799999999988765432 2 5789999999999888877766555555443
No 305
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.59 E-value=1.4e+03 Score=28.04 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=79.0
Q ss_pred hChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcC------------CCcHHHHHHHHHHHHHHh---ccCCccCCHH
Q 002235 309 SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT------------PRNINEVVLMLKKEVVKT---QSGELEKNGE 373 (949)
Q Consensus 309 ~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~------------~~Nv~~Iv~~L~kel~~~---~~~~~d~~~e 373 (949)
++|.++.-....+|.-=..-+..-|.+.+.+|.--++ .-|.+++-. -.+.+.+. ...+ ..+.
T Consensus 323 R~P~~l~lLld~LF~pg~~i~~e~r~kyi~LLAYAasV~e~~~~~~~~~~~~~del~~-t~~ale~a~~ic~~~-~~g~- 399 (584)
T PF04858_consen 323 RHPQFLDLLLDALFKPGSKINPEHRSKYIYLLAYAASVVETPAKNQPDRSLNCDELKS-TKQALEKAHAICCNA-ARGS- 399 (584)
T ss_pred cCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHHHHcccccccCcccccccHHHHHH-HHHHHHHHHHHhhcc-cccc-
Confidence 5777777776666654333357788888877763322 224343222 11222221 1110 1111
Q ss_pred HHHHHHHHHHHh--HccCcccHHHHHHHHHHHHhCCCcc--c---HHHHHHHHHHHHHhCcccHHHHHHHHHHHhc
Q 002235 374 YRQMLIQAIHSC--AIKFPEVASTVVHLLMDFLGDSNVA--S---AIDVIIFVREIIEMNPKLRVSIITRLLDNFY 442 (949)
Q Consensus 374 ~r~~lv~aI~~l--a~kf~~~~~~~l~~L~~lL~~~~~~--v---~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~ 442 (949)
......++.+ |.+||.++.-++.++-..+.++.-+ . ..-.+..+.+|..++|.+|..++.-|+.+++
T Consensus 400 --~~~~~el~~L~~~i~~PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le 473 (584)
T PF04858_consen 400 --SELQAELPKLYSCIRYPVVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLE 473 (584)
T ss_pred --chhHHHHHHHHHHhCCChhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHH
Confidence 2344444544 5699999999999998888776411 1 1113578899999999999999999999987
No 306
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=23.57 E-value=6.6e+02 Score=33.50 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=57.4
Q ss_pred HHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHH
Q 002235 317 LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTV 396 (949)
Q Consensus 317 ~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~ 396 (949)
+...+-..+.+-|.+.....++++..++...|++.....|.. +..+. ..|+..+.. -...+
T Consensus 149 caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~-iky~~--------air~d~l~~----------~~~~v 209 (1549)
T KOG0392|consen 149 CAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLG-IKYNV--------AIRQDLLFQ----------LLNLV 209 (1549)
T ss_pred HHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHH-HHHHH--------HHHHHHHHH----------HHHHH
Confidence 444455566777888888888998888888888776655542 22111 133333331 12356
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccH
Q 002235 397 VHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR 430 (949)
Q Consensus 397 l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~ 430 (949)
+++..+.|.+...++...++.++..+...+++++
T Consensus 210 l~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~ 243 (1549)
T KOG0392|consen 210 LDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLM 243 (1549)
T ss_pred HHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhh
Confidence 6777777777777776666666655554444443
No 307
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.50 E-value=1.1e+03 Score=26.67 Aligned_cols=215 Identities=12% Similarity=0.054 Sum_probs=112.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH------HHHHHHHHHHHHccC-CchHHHHHHHHHHHHHHhhChhhH
Q 002235 242 KYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA------IRAAANTYSQLLLSQ-SDNNVKLIVLDRLNELRSSHRDIM 314 (949)
Q Consensus 242 ~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~------l~~~a~~li~lll~~-~d~nvr~iaL~~L~~l~~~~p~~l 314 (949)
.+.+.|-.++|+-+++.+|=|++++-.+...++. -+.++..++..+.++ .+..++|-.|-.+-.+. ..|...
T Consensus 149 LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~a 227 (432)
T COG5231 149 LFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECA 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHH
Confidence 4556666777777888888888888777544321 123455566655332 33566776666554443 234333
Q ss_pred ---HHH---HHhheeccCC-CCHHHHHHHHHHHHhhcCCC------------cHHHHHHHHHHHHHHhccCCccCCHHHH
Q 002235 315 ---VDL---IMDVLRALNS-PNLDIRRKTLDIVLELITPR------------NINEVVLMLKKEVVKTQSGELEKNGEYR 375 (949)
Q Consensus 315 ---~~~---~~~il~~L~d-~d~~Ir~~aL~lL~~l~~~~------------Nv~~Iv~~L~kel~~~~~~~~d~~~e~r 375 (949)
+.+ ..+++.+... --.-|-|..+.++..++++. |+..-++.|.+ .+|. |.|.+
T Consensus 228 qdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~e--rkys------DEel~ 299 (432)
T COG5231 228 QDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLE--RKYS------DEELV 299 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHh--cCCC------hHHHH
Confidence 222 2223333222 12334455666777777643 45555554443 2332 34555
Q ss_pred HHHHHHHHHhHccCcc--cHHHHHHHHH-HHHhCCCcccHHHHHHH-HHHHHHhCcccHHHHHHHHHHHhcccchHHHHH
Q 002235 376 QMLIQAIHSCAIKFPE--VASTVVHLLM-DFLGDSNVASAIDVIIF-VREIIEMNPKLRVSIITRLLDNFYQIRAARVCT 451 (949)
Q Consensus 376 ~~lv~aI~~la~kf~~--~~~~~l~~L~-~lL~~~~~~v~~e~i~~-l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~ 451 (949)
+.+-+-=.++...+-. ..+.|++-|- +.|..+..+..++.|.. +..+.+. .-.++..|.+.+..-...-..+
T Consensus 300 ~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd----ny~i~k~L~~~lq~n~~nt~i~ 375 (432)
T COG5231 300 IDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD----NYEIVKVLKKYLQSNNPNTWIC 375 (432)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh----hHHHHHHHHHHHhcCCCCceEe
Confidence 5543322333332221 2345555443 34555556666666643 3333221 2457888888887633333566
Q ss_pred HHhhhcccCCCCCCcHHH
Q 002235 452 CALWIIGEYCQSLSEVEN 469 (949)
Q Consensus 452 ~~lwiLGEy~~~~~~~~~ 469 (949)
.++.=+|.|....|++..
T Consensus 376 vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 376 VACSDIFQLVRASPEINA 393 (432)
T ss_pred eeHhhHHHHHHhCchHHH
Confidence 666667777666665433
No 308
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.37 E-value=2.6e+02 Score=31.05 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHhcc----------CCChHHHHHHHHHHHHHhcCCCCcccc----cchH-HHHHHHHccCCChhHHHHH
Q 002235 127 EIIEPLIPSVLQNLQ----------HRHPYIRRNAILAVMAIYKLPQGEQLL----VDAP-EMIEKVLSTEQDPSAKRNA 191 (949)
Q Consensus 127 el~~~l~~~I~~~L~----------d~~pyVRk~A~lal~ki~~l~~~~~li----~~~~-e~l~~~L~~d~d~~v~~~A 191 (949)
-.++.++|+|..|+. |.+-.+|.-|+.-+.-.+. ++++.. |+.. -++..||..++-.+..+.|
T Consensus 273 PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~--~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 273 PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFS--NFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh--hhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 345677777777762 3345699999988888887 666544 3333 3555666566666788888
Q ss_pred HHHHHhcchh
Q 002235 192 FLMLFTCDQD 201 (949)
Q Consensus 192 l~~L~~i~~~ 201 (949)
+.-|.-+..+
T Consensus 351 lkgls~l~ke 360 (450)
T COG5095 351 LKGLSILSKE 360 (450)
T ss_pred hhhhhhhchh
Confidence 7776655554
No 309
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=2e+03 Score=29.59 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=38.8
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHc--cCC----ChhHHHHHHHHHHhcc
Q 002235 140 LQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS--TEQ----DPSAKRNAFLMLFTCD 199 (949)
Q Consensus 140 L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~--~d~----d~~v~~~Al~~L~~i~ 199 (949)
...++.-||...+-|+.+|... .++.++..|+.++|- |. .|. ...+++-++..|.-|+
T Consensus 851 ~s~~~~evr~~sl~~l~silet-~ge~ll~~w~sV~em-l~s~~d~~~ekek~ivrlgf~~lrlIs 914 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILET-VGEHLLHGWQSVFEM-LRSATDFGSEKEKKIVRLGFSCLRLIS 914 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhc-cchhhccccHHHHHH-HHHHhhccchhhhhHHHhhhhhhhhhh
Confidence 3567889999999999999986 577788888765543 21 122 2345556666555544
No 310
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.94 E-value=6e+02 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCC
Q 002235 373 EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN 408 (949)
Q Consensus 373 e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~ 408 (949)
++..+++..+-.+|..-.+....++..|+..|...+
T Consensus 32 ~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 32 EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 355555555555543222233344444444444333
No 311
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.77 E-value=8.3e+02 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHhC
Q 002235 393 ASTVVHLLMDFLGD-SNVASAIDVIIFVREIIEMN 426 (949)
Q Consensus 393 ~~~~l~~L~~lL~~-~~~~v~~e~i~~l~~ii~~~ 426 (949)
.+.++..|++.+-+ .++......+.++.++++++
T Consensus 116 S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 116 SEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 35777777776654 55667777788888888765
No 312
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=22.62 E-value=1.1e+03 Score=26.35 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=91.8
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHhhC--hhhHHHH----HHhheeccCCCCHHHHHHH---HHHH-HhhcCCCcHHHHH
Q 002235 284 SQLLLSQSDNNVKLIVLDRLNELRSSH--RDIMVDL----IMDVLRALNSPNLDIRRKT---LDIV-LELITPRNINEVV 353 (949)
Q Consensus 284 i~lll~~~d~nvr~iaL~~L~~l~~~~--p~~l~~~----~~~il~~L~d~d~~Ir~~a---L~lL-~~l~~~~Nv~~Iv 353 (949)
+..+ .++....|-.+|..+..+...+ |+.+..+ ...++++++-....=+..| +.++ +.++.....++++
T Consensus 49 Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 49 IDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 4434 3455677888888887766542 3344333 2335566654443333444 4444 2345567888888
Q ss_pred HHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc---CcccHH---HHHH--HHHHHHhCCCc----------ccHHHH
Q 002235 354 LMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK---FPEVAS---TVVH--LLMDFLGDSNV----------ASAIDV 415 (949)
Q Consensus 354 ~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k---f~~~~~---~~l~--~L~~lL~~~~~----------~v~~e~ 415 (949)
..+...|.+..... ......|..++.+++-++-- -+.... .+++ |...+++..|. .+...+
T Consensus 128 ~~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 128 EELKPVLKRILTDS-SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 88888877765411 23456778888888877632 223333 3455 33344444433 234444
Q ss_pred HHHHHHHHHhCcc--c---HHHHHHHHHHHhcccchHHHHHHHh
Q 002235 416 IIFVREIIEMNPK--L---RVSIITRLLDNFYQIRAARVCTCAL 454 (949)
Q Consensus 416 i~~l~~ii~~~p~--~---~~~~l~~L~~~l~~i~~~~v~~~~l 454 (949)
+..-.-++...|. + -+..+..|.+.|+. .+..++.++-
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s-~d~~VRiAAG 249 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDS-DDVDVRIAAG 249 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH
Confidence 4444444444454 2 23467777777765 3455655543
No 313
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.51 E-value=5.8e+02 Score=23.95 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHhh---ChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCC
Q 002235 284 SQLLLSQSDNNVKLIVLDRLNELRSS---HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR 347 (949)
Q Consensus 284 i~lll~~~d~nvr~iaL~~L~~l~~~---~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~ 347 (949)
...|..++.++.|..+.-.+..++.+ .++++......+.......+. .+.++..+..++...
T Consensus 12 ~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 12 LKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 33343355566666666666666554 345555554444433333332 456666666666554
No 314
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.39 E-value=2.1e+02 Score=25.54 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhhee----ccCCCCHHHHHHHHHHH
Q 002235 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR----ALNSPNLDIRRKTLDIV 340 (949)
Q Consensus 278 ~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~----~L~d~d~~Ir~~aL~lL 340 (949)
....|+..++...++..+|-.+|+.+.+|...+.+-+..=-..++. ...+++..+-..|.+++
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4566777776677788899999999998887665544432222222 23455667777776654
No 315
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=22.14 E-value=8.9e+02 Score=26.22 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=50.2
Q ss_pred hhhccccccCCCCcEEEEEEEEEecc--------eeEEEEEEEecChhh--hcceEEEEeecCCeEEeecC---------
Q 002235 714 KLNRILQLTGFSDPVYAEAYVTVHHY--------DIVLDVTVINRTKET--LQNLCLELATMGDLKLVERP--------- 774 (949)
Q Consensus 714 ~l~~i~qltg~~dp~Y~ea~v~v~~~--------~ivld~~v~N~t~~t--LqNv~vel~t~g~l~~~~~p--------- 774 (949)
.+.|-++|.- -.|+=|---++.-.. ++.|+.-|.|+|... |+.|.+|-. ..++..+..
T Consensus 103 tfRK~ykF~v-~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~--~~~~~~~ln~~~~~~~~~ 179 (249)
T PF06159_consen 103 TFRKFYKFQV-LNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPS--PGFKVTDLNWEPSGESSD 179 (249)
T ss_pred eEeeeeEEeC-CCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeecC--CCceeEeccccccccccc
Confidence 3445555543 478766555555555 899999999999886 687777643 333322111
Q ss_pred ---------CcceeCCCCeeEEEEEEEEec
Q 002235 775 ---------QNYTLAPESSKQIKANIKVSS 795 (949)
Q Consensus 775 ---------~~~~l~p~~~~~i~~~~kv~s 795 (949)
....|.|++..+.-+.++-.+
T Consensus 180 ~~~~~~~~~~~~~L~P~d~~qylF~l~~~~ 209 (249)
T PF06159_consen 180 GEFGGISSGSRPYLQPGDVRQYLFCLTPKP 209 (249)
T ss_pred ccccccccCCcceeCCCCEEEEEEEEEECC
Confidence 234589999777666665544
No 316
>PF05536 Neurochondrin: Neurochondrin
Probab=22.06 E-value=1.5e+03 Score=27.62 Aligned_cols=205 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHccCCChH--------HHHHHHHHHHHHHccC-------CchHHHHHHHHHHHHHHh
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSLSSAPT--------AIRAAANTYSQLLLSQ-------SDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~--------~l~~~a~~li~lll~~-------~d~nvr~iaL~~L~~l~~ 308 (949)
++-+..+|++....=+|.+.-.+.++-++.+ ..+++...++..|+.+ +....+-+|+..|..+..
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Q ss_pred -----hChhhHHHHHHhheeccCCCCH-HHHHHHHHHHH----------hhcCCCcHHHHHHHHHHHHHHhccCCccCCH
Q 002235 309 -----SHRDIMVDLIMDVLRALNSPNL-DIRRKTLDIVL----------ELITPRNINEVVLMLKKEVVKTQSGELEKNG 372 (949)
Q Consensus 309 -----~~p~~l~~~~~~il~~L~d~d~-~Ir~~aL~lL~----------~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~ 372 (949)
.+|+++.. ++.++.++...+. .+-..++..|. .++...-+..+.+.+.++ ....
T Consensus 87 ~~~~a~~~~~~~~-IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~---------~~~~ 156 (543)
T PF05536_consen 87 DPELASSPQMVSR-IPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ---------SFQM 156 (543)
T ss_pred ChhhhcCHHHHHH-HHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC---------cchH
Q ss_pred HHHHHHHHHHHHhHc-----cCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhC----------cccHHHHHHHH
Q 002235 373 EYRQMLIQAIHSCAI-----KFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN----------PKLRVSIITRL 437 (949)
Q Consensus 373 e~r~~lv~aI~~la~-----kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~----------p~~~~~~l~~L 437 (949)
+..-.+...+..-.. +++.....++..+...+...++....+...++..++... |.....+...+
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl 236 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL 236 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Q ss_pred HHHhcccchHHHHHHHhhhcc
Q 002235 438 LDNFYQIRAARVCTCALWIIG 458 (949)
Q Consensus 438 ~~~l~~i~~~~v~~~~lwiLG 458 (949)
-..+.+=-.++-+..++++.+
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa 257 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAA 257 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHH
No 317
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.70 E-value=1.2e+03 Score=26.30 Aligned_cols=147 Identities=12% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcC-CCcHHHH
Q 002235 274 TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT-PRNINEV 352 (949)
Q Consensus 274 ~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~-~~Nv~~I 352 (949)
..+-.....++..+ +++...+-.+......| +++|...|.+.|+.....+..-+|.+|..++. ....-.
T Consensus 23 ~~~~~~L~~~l~~l--s~~~~~~~~g~~l~~~i-------L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a- 92 (330)
T PF11707_consen 23 SLVSSVLALLLKKL--SSDLSFQSYGLELIRSI-------LQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALA- 92 (330)
T ss_pred HHHHHHHHHHHHHh--ccchhHHHHHHHHHHHH-------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHH-
Q ss_pred HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH-----------HHHHHHHHHHhCCCcccHHHHHH---H
Q 002235 353 VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS-----------TVVHLLMDFLGDSNVASAIDVII---F 418 (949)
Q Consensus 353 v~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~-----------~~l~~L~~lL~~~~~~v~~e~i~---~ 418 (949)
+++.+..+ |....+..+-.--.+-..... .++.+++.+|...+..+..+++. .
T Consensus 93 -----~~v~~~fd--------~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~ 159 (330)
T PF11707_consen 93 -----REVLRSFD--------FSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKL 159 (330)
T ss_pred -----HHHHHhcC--------CchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCch
Q ss_pred HHHHHHhCcccHHHHHHHHHHHhcc
Q 002235 419 VREIIEMNPKLRVSIITRLLDNFYQ 443 (949)
Q Consensus 419 l~~ii~~~p~~~~~~l~~L~~~l~~ 443 (949)
+..+.+.-.+-...++..+++.+.+
T Consensus 160 ~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 160 MSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHH
No 318
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.12 E-value=1.7e+02 Score=27.00 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc-cc-chHHHHHHHH
Q 002235 128 IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL-LV-DAPEMIEKVL 179 (949)
Q Consensus 128 l~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l-i~-~~~e~l~~~L 179 (949)
.++.++.++..+++|-.|.||.-|+.-+--+.. .+|+. ++ .|.+++..++
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~--~~p~~~~~~~~~kil~~f~ 59 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLE--HAPDELCSGGWVKILPNFL 59 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHH--HCChHhHhhhHHHHHHHHH
Confidence 356788899999999999999999998888888 78877 44 3567776654
No 319
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.09 E-value=8.4e+02 Score=30.60 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH
Q 002235 315 VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS 394 (949)
Q Consensus 315 ~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~ 394 (949)
+.-+.+++..|.++|..+...+-.++....+..-=.-+|+.|..++..+.+ .+++..++..=.+...
T Consensus 3 ~~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s-------------~~~~~il~~~~~P~~K 69 (668)
T PF04388_consen 3 QASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS-------------QRALEILVGVQEPHDK 69 (668)
T ss_pred cccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc-------------HHHHHHHHhcCCccHH
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCC-cHH
Q 002235 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKL-----RVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLS-EVE 468 (949)
Q Consensus 395 ~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~-~~~ 468 (949)
.+++.|-+++.... .+..++..+..+++.+|.. ....+..|+.+|..-.+.-+...++-+|--.-+.++ ...
T Consensus 70 ~~~~~l~~~~~~~~--~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 70 HLFDKLNDYFVKPS--YRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHHcCch--hHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Q ss_pred HHHHHHHHHhCCC
Q 002235 469 NGIATIKQCLGEL 481 (949)
Q Consensus 469 ~~~~~i~~~l~~~ 481 (949)
.++-.|-..++.+
T Consensus 148 ~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 148 PHLPDLFNIFGRL 160 (668)
T ss_pred HHHHHHHHHHHHH
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.08 E-value=1.1e+03 Score=25.76 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=118.2
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCC---CCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHH
Q 002235 74 LLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQH---PNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRN 150 (949)
Q Consensus 74 ~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~---~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~ 150 (949)
--+||..++-++.+.+ +|.+.+.+.+.|=+.. .++.++..-+.......+..-.+.+-+-+.+.+.+.+.+-+--
T Consensus 6 pQlFW~~vAcL~S~~E--~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHE--HEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcH--HHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 3578888887777665 6777777777775543 3455666666665554433456778888999999988887655
Q ss_pred HHHHHHHHhcCCCCcccccc----h--------HHHHHHHHccCCC-----hhHHHHHHHHHHhcchh---hHHHHHHHH
Q 002235 151 AILAVMAIYKLPQGEQLLVD----A--------PEMIEKVLSTEQD-----PSAKRNAFLMLFTCDQD---RAINYLLTH 210 (949)
Q Consensus 151 A~lal~ki~~l~~~~~li~~----~--------~e~l~~~L~~d~d-----~~v~~~Al~~L~~i~~~---~ai~~L~~~ 210 (949)
.++.-. ..+ .+..++.. + |-.+..+ .+.+ +.+...| ..|.+++.. ..+..+...
T Consensus 84 ~lL~~L--~~~-~~~~lig~~~~rll~~~la~LP~ll~~~--d~~~~i~~~~~~~~~A-~~La~~a~~~~~~~La~il~~ 157 (262)
T PF14225_consen 84 RLLSRL--TPL-PDDPLIGDSQSRLLFLLLALLPRLLHAF--DDPNPIQPDQECIEIA-EALAQVAEAQGLPNLARILSS 157 (262)
T ss_pred HHHHHH--hcC-CCccccCCCCccHHHHHHHHHHHHHHHh--cccccccccHHHHHHH-HHHHHHHHhCCCccHHHHHHH
Confidence 554443 443 13333321 1 1222221 2223 4444443 333333322 123334333
Q ss_pred Hhh--cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC----hHHHHHHHHHHH
Q 002235 211 VDR--VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA----PTAIRAAANTYS 284 (949)
Q Consensus 211 l~~--i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~----~~~l~~~a~~li 284 (949)
+.. ....++|+ ..++++++.+. .|......+.++..+|.+.-+.++..+.+.|..+-+. .........+++
T Consensus 158 ya~~~fr~~~dfl-~~v~~~l~~~f--~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispll 234 (262)
T PF14225_consen 158 YAKGRFRDKDDFL-SQVVSYLREAF--FPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLL 234 (262)
T ss_pred HHhcCCCCHHHHH-HHHHHHHHHHh--CchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHH
Confidence 322 23456663 44455555542 2555666777788888877777777777766554221 011223455566
Q ss_pred HHHccCCchHHHHHHHHHHHHHH
Q 002235 285 QLLLSQSDNNVKLIVLDRLNELR 307 (949)
Q Consensus 285 ~lll~~~d~nvr~iaL~~L~~l~ 307 (949)
+++.+ +.-.-||+.|..+.
T Consensus 235 rlL~t----~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 235 RLLQT----DLWMEALEVLDEIV 253 (262)
T ss_pred HHhCC----ccHHHHHHHHHHHH
Confidence 65532 23344555554443
No 321
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.03 E-value=1.3e+03 Score=26.50 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCCCcchhHHHHHHHHHHhhcCCC----CCCCchHHHHHHHHHhhcCC-------CCHHHHHHHHHHhhcCC-chhhHHH
Q 002235 64 PSEDHTIQKLLLLYLEIIDKTDAK----GRVLPEMILICQNLRNNLQH-------PNEYIRGVTLRFLCRLN-ETEIIEP 131 (949)
Q Consensus 64 ~s~d~~lKrL~YL~l~~~~~~~~d----~~l~~e~iLv~NsL~KDL~~-------~N~~iR~~ALr~L~~I~-~~el~~~ 131 (949)
++.+..-|.=+|+.+...-+...+ ..+.+.+-+.+..+++|+.+ .+.-+...|||+|+.+- .|+++..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 445556666677766554322211 11112256788999999987 46678899999999864 3444333
Q ss_pred --------HHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 132 --------LIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 132 --------l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
++..-...+.+ ..|-.--++++.+.+.-+ +++..+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~--f~~~~~ 126 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK--FSPKIM 126 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CCCccc
Confidence 33333444444 344344445555555555 555544
No 322
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=1.7e+03 Score=27.68 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=43.1
Q ss_pred chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHh--hcCCCCHHHHHHHHHHhhcCCchhhHH
Q 002235 53 QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRN--NLQHPNEYIRGVTLRFLCRLNETEIIE 130 (949)
Q Consensus 53 ~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~K--DL~~~N~~iR~~ALr~L~~I~~~el~~ 130 (949)
..|-.|+.++++.-+..++|++-. +.+.++.+ ++ +.-.+ -+.+---.+-|++|+.+..+.+.+++-
T Consensus 193 ~~Fn~vv~~~lq~~~~~l~~ll~~------k~~~~~~~----~~--~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~ 260 (661)
T KOG2256|consen 193 EAFNAVVIFCLQEMPDILRKLLRG------KVDKDKSL----FL--KTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLA 260 (661)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCC------CcCCCccc----cc--cccccchhhhHHHHHHhHHHHHHHHHcchHHHHH
Confidence 567777777877777777776522 12233321 11 11111 111111235678888888888888877
Q ss_pred HHHHHHHHhc
Q 002235 131 PLIPSVLQNL 140 (949)
Q Consensus 131 ~l~~~I~~~L 140 (949)
.+.+.+.+.+
T Consensus 261 ~~L~~l~~l~ 270 (661)
T KOG2256|consen 261 FTLRHLTVLV 270 (661)
T ss_pred HHHHHHHHHH
Confidence 7776665544
No 323
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=20.10 E-value=1.3e+03 Score=26.35 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHHHhhChhhHHHHHH----hheeccCCCCHHHHHHHHHHHHhh
Q 002235 291 SDNNVKLIVLDRLNELRSSHRDIMVDLIM----DVLRALNSPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 291 ~d~nvr~iaL~~L~~l~~~~p~~l~~~~~----~il~~L~d~d~~Ir~~aL~lL~~l 343 (949)
+..++-+-.|..+..+...+|..+..|.. .++..+-+....||.+|+.++..+
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 44677788888888888899988876644 455556667888999988877654
Done!