Query 002235
Match_columns 949
No_of_seqs 292 out of 1366
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 3.1E-68 1.1E-72 644.5 35.1 441 17-474 35-526 (621)
2 1w63_A Adapter-related protein 100.0 1.2E-63 4E-68 605.6 44.8 430 17-464 34-492 (618)
3 2vgl_B AP-2 complex subunit be 100.0 3.8E-63 1.3E-67 598.5 44.3 441 14-474 10-469 (591)
4 3tjz_B Coatomer subunit gamma; 100.0 6.8E-59 2.3E-63 518.7 14.5 321 17-347 26-355 (355)
5 1r4x_A Gamma1-COP, coatomer ga 100.0 5E-34 1.7E-38 302.7 21.7 223 708-937 11-270 (275)
6 1pzd_A Coatomer gamma subunit; 100.0 1.4E-33 4.9E-38 307.5 21.6 222 709-937 59-317 (322)
7 1b3u_A Protein (protein phosph 99.6 1E-13 3.5E-18 165.1 30.9 424 22-465 92-551 (588)
8 1w63_A Adapter-related protein 99.6 3.8E-13 1.3E-17 162.7 28.3 424 19-467 72-545 (618)
9 1oyz_A Hypothetical protein YI 99.6 1.8E-13 6.1E-18 148.3 21.5 253 97-419 24-277 (280)
10 2vgl_B AP-2 complex subunit be 99.5 4E-13 1.4E-17 161.7 24.7 421 19-459 51-529 (591)
11 2jdq_A Importin alpha-1 subuni 99.5 2.8E-12 9.5E-17 147.7 29.4 352 96-461 20-442 (450)
12 1b3u_A Protein (protein phosph 99.5 2.2E-12 7.6E-17 153.6 28.5 390 62-463 95-510 (588)
13 4fdd_A Transportin-1; heat rep 99.4 1.9E-10 6.7E-15 144.1 38.2 430 18-459 11-512 (852)
14 2z6g_A B-catenin; FULL-length, 99.4 1.8E-11 6.1E-16 152.0 25.9 354 98-463 117-519 (780)
15 4fdd_A Transportin-1; heat rep 99.4 8.8E-11 3E-15 147.2 32.2 382 64-463 23-472 (852)
16 1wa5_B Importin alpha subunit; 99.4 4.7E-11 1.6E-15 141.5 26.7 316 98-427 89-460 (530)
17 2jdq_A Importin alpha-1 subuni 99.4 1.7E-10 6E-15 132.6 29.5 283 97-388 65-391 (450)
18 3now_A UNC-45 protein, SD10334 99.4 3.1E-10 1.1E-14 139.1 33.1 417 22-454 252-774 (810)
19 1ibr_B P95, importin beta-1 su 99.3 4.9E-11 1.7E-15 137.4 23.7 354 100-465 5-440 (462)
20 4b8j_A Importin subunit alpha- 99.3 1.4E-10 4.8E-15 137.1 27.9 354 96-463 74-497 (528)
21 2bpt_A Importin beta-1 subunit 99.3 3E-09 1E-13 132.6 39.8 438 18-464 5-531 (861)
22 2vgl_A Adaptor protein complex 99.3 5.8E-10 2E-14 134.7 27.7 419 20-462 77-550 (621)
23 2z6h_A Catenin beta-1, beta-ca 99.3 2.2E-08 7.5E-13 121.5 41.8 453 16-481 13-549 (644)
24 1oyz_A Hypothetical protein YI 99.3 2.7E-10 9.3E-15 123.1 22.1 252 55-383 25-278 (280)
25 1wa5_B Importin alpha subunit; 99.3 9.9E-10 3.4E-14 130.0 28.8 319 132-461 88-456 (530)
26 1u6g_C TIP120 protein, CAND1; 99.3 1.3E-09 4.5E-14 142.0 31.9 433 17-461 6-547 (1230)
27 2bpt_A Importin beta-1 subunit 99.2 3.5E-08 1.2E-12 122.9 41.9 425 25-460 103-625 (861)
28 4b8j_A Importin subunit alpha- 99.2 3E-08 1E-12 117.0 37.4 317 18-345 75-443 (528)
29 2z6g_A B-catenin; FULL-length, 99.2 2.1E-08 7.1E-13 124.5 35.8 449 19-480 152-684 (780)
30 3ul1_B Importin subunit alpha- 99.2 1.1E-08 3.7E-13 120.8 31.4 352 98-461 59-477 (510)
31 1jdh_A Beta-catenin; beta-cate 99.2 8.5E-09 2.9E-13 121.2 30.3 348 97-459 18-423 (529)
32 1qgr_A Protein (importin beta 99.2 1.8E-08 6.1E-13 125.8 34.6 435 22-462 177-722 (876)
33 3ltm_A Alpha-REP4; protein eng 99.2 1.2E-09 4.1E-14 112.8 19.7 185 97-309 20-204 (211)
34 1qgr_A Protein (importin beta 99.2 3.7E-08 1.3E-12 122.9 37.1 433 18-459 2-534 (876)
35 3ltj_A Alpharep-4; protein eng 99.1 2.5E-09 8.7E-14 109.5 20.0 183 96-306 14-196 (201)
36 1jdh_A Beta-catenin; beta-cate 99.1 8.5E-09 2.9E-13 121.1 26.2 330 124-466 10-389 (529)
37 3now_A UNC-45 protein, SD10334 99.1 4.1E-08 1.4E-12 120.4 32.9 395 54-463 247-738 (810)
38 3tpo_A Importin subunit alpha- 99.1 1.2E-08 4.1E-13 120.9 27.6 318 97-425 77-450 (529)
39 1u6g_C TIP120 protein, CAND1; 99.1 4.8E-09 1.6E-13 136.6 24.7 377 99-479 9-485 (1230)
40 2z6h_A Catenin beta-1, beta-ca 99.1 1.7E-08 5.9E-13 122.4 27.7 329 125-466 8-386 (644)
41 1ibr_B P95, importin beta-1 su 99.0 4.1E-08 1.4E-12 112.8 26.3 361 18-391 2-441 (462)
42 3ltm_A Alpha-REP4; protein eng 99.0 2.6E-08 9E-13 102.7 20.6 187 52-272 18-204 (211)
43 3ltj_A Alpharep-4; protein eng 99.0 2.1E-08 7.1E-13 102.6 19.6 186 129-344 12-197 (201)
44 3ul1_B Importin subunit alpha- 99.0 9.3E-07 3.2E-11 104.2 36.4 315 16-343 56-428 (510)
45 3tpo_A Importin subunit alpha- 99.0 1.2E-06 4E-11 103.8 36.5 316 18-343 77-447 (529)
46 3hs8_A Adaptor protein complex 98.9 5.4E-08 1.8E-12 104.4 21.1 207 726-941 54-269 (273)
47 3tjz_B Coatomer subunit gamma; 98.9 3.4E-08 1.2E-12 110.1 19.0 276 131-418 68-347 (355)
48 4hxt_A De novo protein OR329; 98.8 3.1E-07 1.1E-11 96.3 22.5 206 133-345 4-241 (252)
49 4hxt_A De novo protein OR329; 98.8 1.3E-06 4.5E-11 91.5 24.4 208 98-312 4-245 (252)
50 4ady_A RPN2, 26S proteasome re 98.7 3.6E-05 1.2E-09 94.9 37.3 358 14-408 320-701 (963)
51 4db8_A Armadillo-repeat protei 98.7 5.3E-07 1.8E-11 95.1 18.3 215 98-345 14-251 (252)
52 1xm9_A Plakophilin 1; armadill 98.6 5.2E-06 1.8E-10 96.4 25.5 349 99-464 5-451 (457)
53 4db8_A Armadillo-repeat protei 98.5 2.9E-06 9.9E-11 89.4 19.3 209 51-270 10-250 (252)
54 3l6x_A Catenin delta-1; cateni 98.5 0.00011 3.8E-09 87.1 32.9 326 98-464 50-478 (584)
55 3l6x_A Catenin delta-1; cateni 98.5 0.00011 3.9E-09 87.1 32.9 173 130-308 47-270 (584)
56 3nmz_A APC variant protein; pr 98.4 5.1E-05 1.7E-09 87.8 27.3 292 132-428 71-454 (458)
57 2db0_A 253AA long hypothetical 98.4 1.5E-05 5.2E-10 78.5 18.9 197 181-387 42-246 (253)
58 3b2a_A TON_1937, putative unch 98.4 3.3E-06 1.1E-10 86.7 14.9 183 172-357 35-230 (265)
59 1xm9_A Plakophilin 1; armadill 98.3 0.0003 1E-08 81.5 30.7 320 18-348 3-452 (457)
60 1te4_A Conserved protein MTH18 98.2 5.5E-07 1.9E-11 85.9 4.3 117 97-230 13-129 (131)
61 4ady_A RPN2, 26S proteasome re 98.2 0.00025 8.6E-09 87.4 28.3 304 109-443 371-699 (963)
62 4db6_A Armadillo repeat protei 98.2 3.2E-05 1.1E-09 79.0 17.1 176 99-307 15-208 (210)
63 4db6_A Armadillo repeat protei 98.2 3.9E-05 1.3E-09 78.3 17.5 102 243-345 13-125 (210)
64 2qk2_A LP04448P; mini spindles 98.2 2.5E-05 8.7E-10 82.2 15.5 184 127-344 11-204 (242)
65 2x19_B Importin-13; nuclear tr 98.1 0.00019 6.4E-09 90.9 26.1 386 63-465 34-521 (963)
66 2x1g_F Cadmus; transport prote 98.1 0.00022 7.4E-09 90.5 26.0 386 65-465 18-538 (971)
67 3opb_A SWI5-dependent HO expre 98.1 0.00033 1.1E-08 84.7 25.1 232 110-345 308-635 (778)
68 3nmw_A APC variant protein; AR 98.1 0.00011 3.8E-09 82.2 19.6 238 188-428 49-338 (354)
69 1kyf_A Alpha-adaptin C; protei 98.1 0.0003 1E-08 74.5 21.7 196 735-942 38-244 (247)
70 2db0_A 253AA long hypothetical 98.0 0.0015 5E-08 64.6 23.5 208 131-343 32-244 (253)
71 2qk2_A LP04448P; mini spindles 98.0 5.7E-05 2E-09 79.5 15.1 175 246-427 19-208 (242)
72 3opb_A SWI5-dependent HO expre 98.0 0.021 7.1E-07 69.2 37.0 425 17-454 132-720 (778)
73 1te4_A Conserved protein MTH18 97.9 2.9E-05 9.8E-10 73.8 9.5 119 54-198 13-131 (131)
74 1wa5_C Importin alpha RE-expor 97.9 0.01 3.5E-07 75.0 35.6 312 127-465 81-490 (960)
75 3nmw_A APC variant protein; AR 97.8 0.00057 1.9E-08 76.5 19.8 236 105-346 41-335 (354)
76 1wa5_C Importin alpha RE-expor 97.8 0.0025 8.5E-08 80.7 27.9 319 65-391 416-795 (960)
77 3nmz_A APC variant protein; pr 97.7 0.0019 6.5E-08 74.6 21.1 229 113-347 165-452 (458)
78 2qk1_A Protein STU2; STU2P, XM 97.7 0.00046 1.6E-08 73.3 14.6 192 131-354 16-232 (249)
79 3ibv_A Exportin-T; karyopherin 97.4 0.082 2.8E-06 66.9 31.9 398 64-473 18-535 (980)
80 1xqr_A HSPBP1 protein; armadil 97.3 0.0044 1.5E-07 67.4 16.8 134 321-461 86-237 (296)
81 3m1i_C Exportin-1; heat repeat 97.3 0.071 2.4E-06 68.0 30.0 150 317-466 345-533 (1049)
82 2qk1_A Protein STU2; STU2P, XM 97.3 0.0031 1.1E-07 66.8 14.6 193 248-450 22-243 (249)
83 1xqr_A HSPBP1 protein; armadil 97.1 0.019 6.4E-07 62.4 19.7 142 281-429 84-243 (296)
84 2x19_B Importin-13; nuclear tr 97.1 0.39 1.3E-05 60.3 33.8 316 106-426 459-848 (963)
85 3a6p_A Exportin-5; exportin-5, 96.9 1 3.5E-05 58.3 36.1 384 66-465 25-564 (1204)
86 1lrv_A LRV, leucine-rich repea 96.9 0.00073 2.5E-08 71.4 5.5 184 105-383 59-242 (244)
87 3b2a_A TON_1937, putative unch 96.8 0.018 6.3E-07 59.3 14.0 143 52-199 74-217 (265)
88 2g30_A AP-2 complex subunit be 96.6 0.057 1.9E-06 57.2 16.9 201 730-941 46-252 (258)
89 2x1g_F Cadmus; transport prote 96.6 0.19 6.6E-06 63.3 25.0 307 108-426 365-762 (971)
90 3tt9_A Plakophilin-2; cell adh 96.5 0.1 3.5E-06 54.5 18.5 143 244-387 54-229 (233)
91 2of3_A ZYG-9; multifunctional 96.3 0.014 4.9E-07 62.0 10.6 160 290-459 57-233 (266)
92 3u0r_A Apoptosis inhibitor 5; 96.3 1.7 5.9E-05 49.4 27.6 275 107-392 39-363 (507)
93 4hat_C Exportin-1; heat repeat 96.2 2.2 7.4E-05 54.1 31.1 383 69-472 31-539 (1023)
94 3grl_A General vesicular trans 96.1 0.83 2.8E-05 54.1 24.8 293 141-467 32-399 (651)
95 1lsh_A Lipovitellin (LV-1N, LV 95.9 0.49 1.7E-05 60.3 23.3 177 124-308 388-576 (1056)
96 4ffb_C Protein STU2; tubulin f 95.8 0.24 8.2E-06 52.7 17.5 168 136-308 14-212 (278)
97 3o2t_A Symplekin; heat repeat, 95.7 2.1 7.2E-05 47.7 24.9 92 112-207 41-135 (386)
98 3m1i_C Exportin-1; heat repeat 95.5 7.2 0.00025 49.4 32.6 139 15-159 11-165 (1049)
99 3grl_A General vesicular trans 95.5 0.092 3.2E-06 62.1 13.5 181 281-472 24-251 (651)
100 4ffb_C Protein STU2; tubulin f 95.5 0.22 7.6E-06 53.0 15.7 176 22-200 14-212 (278)
101 3l9t_A Putative uncharacterize 95.5 0.76 2.6E-05 47.6 18.7 144 240-401 69-218 (240)
102 2iw3_A Elongation factor 3A; a 95.5 6.3 0.00022 49.3 30.3 245 96-346 54-328 (986)
103 3u0r_A Apoptosis inhibitor 5; 95.3 3.9 0.00013 46.5 25.3 118 218-341 41-159 (507)
104 2iw3_A Elongation factor 3A; a 95.3 1.7 5.7E-05 54.4 24.4 241 130-385 53-322 (986)
105 1lrv_A LRV, leucine-rich repea 95.3 0.029 1E-06 59.0 7.5 182 62-338 58-239 (244)
106 1lsh_A Lipovitellin (LV-1N, LV 95.2 0.46 1.6E-05 60.5 19.4 182 14-202 353-545 (1056)
107 3ibv_A Exportin-T; karyopherin 94.8 1.3 4.4E-05 55.9 21.9 70 106-177 505-582 (980)
108 3gs3_A Symplekin, LD45768P; he 94.6 5.4 0.00019 41.9 24.2 155 278-436 53-255 (257)
109 3tt9_A Plakophilin-2; cell adh 94.4 0.28 9.7E-06 51.1 12.3 105 95-201 7-125 (233)
110 4hat_C Exportin-1; heat repeat 94.2 3.7 0.00013 52.0 24.3 101 100-201 455-570 (1023)
111 3gs3_A Symplekin, LD45768P; he 94.0 6.1 0.00021 41.6 21.6 99 99-201 19-120 (257)
112 2of3_A ZYG-9; multifunctional 93.7 0.49 1.7E-05 50.2 12.5 133 133-269 48-194 (266)
113 3l9t_A Putative uncharacterize 92.4 2.1 7.3E-05 44.2 14.6 131 101-239 76-212 (240)
114 3o2t_A Symplekin; heat repeat, 90.9 17 0.00059 40.4 20.9 191 221-438 41-270 (386)
115 3a6p_A Exportin-5; exportin-5, 89.7 50 0.0017 42.4 27.1 59 99-160 15-76 (1204)
116 3gjx_A Exportin-1; transport, 88.2 22 0.00074 45.1 21.5 124 114-238 500-648 (1073)
117 3oc3_A Helicase MOT1, MOT1; re 85.0 4.9 0.00017 46.6 11.6 228 65-304 185-432 (800)
118 4gmo_A Putative uncharacterize 83.6 5.1 0.00018 48.3 12.2 60 101-160 39-105 (684)
119 3dad_A FH1/FH2 domain-containi 80.7 30 0.001 37.6 15.3 142 281-458 163-318 (339)
120 3oc3_A Helicase MOT1, MOT1; re 80.5 6.8 0.00023 45.5 10.5 172 256-441 242-415 (800)
121 3gjx_A Exportin-1; transport, 75.6 26 0.00087 44.5 15.0 59 249-311 35-93 (1073)
122 1t06_A Hypothetical protein; s 74.8 4.4 0.00015 42.0 6.6 71 105-177 117-195 (235)
123 2kzb_A Autophagy-related prote 71.4 6.1 0.00021 34.4 5.4 56 734-789 15-73 (118)
124 4gmo_A Putative uncharacterize 71.1 37 0.0013 40.7 14.5 66 280-347 36-107 (684)
125 3s4w_B Protein FACD2, fanconi 67.5 2.8E+02 0.0096 35.7 29.1 128 241-377 399-539 (1323)
126 2b6c_A Hypothetical protein EF 65.8 11 0.00039 38.3 7.3 152 57-229 58-215 (220)
127 1x5b_A Signal transducing adap 65.5 66 0.0022 31.1 12.3 85 254-342 31-122 (163)
128 1ho8_A Vacuolar ATP synthase s 64.6 2E+02 0.0067 32.8 25.1 152 110-274 77-260 (480)
129 3ldz_A STAM-1, signal transduc 62.9 62 0.0021 30.4 11.3 84 255-342 22-111 (140)
130 3dad_A FH1/FH2 domain-containi 61.5 1.5E+02 0.0053 32.0 15.3 61 136-199 123-188 (339)
131 3jxy_A Alkylpurine DNA glycosy 58.6 1.6E+02 0.0055 29.9 18.3 203 118-341 11-223 (232)
132 1ho8_A Vacuolar ATP synthase s 58.4 2.5E+02 0.0085 32.0 23.3 115 185-308 76-197 (480)
133 1elk_A Target of MYB1; superhe 56.5 1.3E+02 0.0044 28.7 12.5 87 253-342 31-127 (157)
134 3jxy_A Alkylpurine DNA glycosy 54.2 15 0.00051 37.8 5.7 191 20-231 7-224 (232)
135 1upk_A MO25 protein; transfera 53.4 2.5E+02 0.0084 30.4 20.7 72 131-204 78-156 (341)
136 3g2s_A C-terminal fragment of 51.8 69 0.0024 30.5 9.6 86 254-343 27-124 (149)
137 1mhq_A ADP-ribosylation factor 51.0 1.2E+02 0.0041 28.7 11.1 85 255-343 18-114 (148)
138 1upk_A MO25 protein; transfera 49.5 2.8E+02 0.0097 30.0 18.4 113 291-439 176-297 (341)
139 1z5h_A Tricorn protease intera 49.1 1.8E+02 0.0063 35.2 15.3 167 18-198 492-662 (780)
140 1vsy_5 Proteasome activator BL 47.8 79 0.0027 39.7 11.8 136 290-426 813-968 (997)
141 1juq_A ADP-ribosylation factor 45.7 97 0.0033 30.1 9.8 65 278-343 50-126 (171)
142 1vsy_4 Proteasome activator BL 45.5 4E+02 0.014 32.4 17.3 38 126-165 334-371 (799)
143 2xzz_A Protein-glutamine gamma 43.8 47 0.0016 29.5 6.5 53 738-791 19-71 (102)
144 3zyq_A Hepatocyte growth facto 40.7 2.3E+02 0.0077 28.7 12.1 51 255-309 25-75 (226)
145 2kzk_A Uncharacterized protein 40.5 11 0.00038 32.1 1.7 45 734-783 11-56 (107)
146 1x5b_A Signal transducing adap 39.1 1.4E+02 0.0047 28.8 9.6 61 137-200 21-81 (163)
147 4flb_A Regulation of nuclear P 38.1 63 0.0022 29.7 6.8 50 376-425 21-70 (132)
148 2r39_A FIXG-related protein; s 35.9 79 0.0027 28.5 7.0 51 742-794 34-84 (118)
149 2b6c_A Hypothetical protein EF 33.3 3.8E+02 0.013 26.7 13.4 198 119-338 6-213 (220)
150 3s4w_B Protein FACD2, fanconi 33.2 9E+02 0.031 31.1 21.4 117 241-361 156-272 (1323)
151 1vsy_5 Proteasome activator BL 33.0 3.8E+02 0.013 33.5 14.7 68 126-196 128-199 (997)
152 3rru_A TOM1L1 protein; structu 31.7 2.7E+02 0.0094 26.3 10.2 86 256-344 34-129 (152)
153 2fv2_A RCD1 required for cell 31.6 4.6E+02 0.016 27.2 14.6 31 99-131 6-38 (268)
154 1elk_A Target of MYB1; superhe 30.6 1.6E+02 0.0056 28.0 8.5 14 183-196 66-79 (157)
155 3ebb_A Phospholipase A2-activa 29.4 2.1E+02 0.0072 30.5 10.0 100 97-198 148-261 (304)
156 1dvp_A HRS, hepatocyte growth 29.1 4.4E+02 0.015 26.2 13.0 32 278-310 42-73 (220)
157 3eg5_B Protein diaphanous homo 25.9 5.1E+02 0.017 28.4 12.7 37 321-357 167-207 (383)
158 3ldz_A STAM-1, signal transduc 25.8 3E+02 0.01 25.6 9.3 27 241-267 84-110 (140)
159 3g2s_A C-terminal fragment of 24.7 2.9E+02 0.0099 26.1 9.0 15 216-230 59-73 (149)
160 1juq_A ADP-ribosylation factor 24.2 2.3E+02 0.0079 27.4 8.4 16 182-197 61-76 (171)
161 1dvp_A HRS, hepatocyte growth 24.1 3.9E+02 0.013 26.7 10.5 18 181-198 52-69 (220)
162 2npp_B PP2A, B subunit, serine 22.9 8.3E+02 0.029 27.4 21.0 217 130-398 161-410 (449)
163 3zyq_A Hepatocyte growth facto 21.7 4.2E+02 0.014 26.7 10.2 17 216-232 56-72 (226)
164 2xfg_B Endoglucanase 1; hydrol 21.5 1.3E+02 0.0043 29.5 5.8 38 725-762 16-57 (176)
165 3tj1_A RNA polymerase I-specif 21.4 1E+03 0.036 27.9 16.4 117 342-465 127-248 (649)
166 1mhq_A ADP-ribosylation factor 20.8 4.3E+02 0.015 24.8 9.3 18 181-198 48-65 (148)
167 1z5h_A Tricorn protease intera 20.2 1.2E+03 0.04 28.0 21.6 199 217-439 503-708 (780)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=3.1e-68 Score=644.46 Aligned_cols=441 Identities=16% Similarity=0.268 Sum_probs=390.6
Q ss_pred ccHHHHHHHhcC---CChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch
Q 002235 17 AIANEIKEALEG---NDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (949)
Q Consensus 17 ~~~~eir~~L~s---~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e 93 (949)
.++++||+.|++ .+..+|+++|+|+||++++|+|++++||+|++ +++|+|+.+||+||+|++.+++.++ +.
T Consensus 35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvk-l~~s~~~~~Krl~YL~l~~~~~~~~-----e~ 108 (621)
T 2vgl_A 35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVN-LLSSNRYTEKQIGYLFISVLVNSNS-----EL 108 (621)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHH-GGGCSCHHHHHHHHHHHHHSCCCCH-----HH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHH-HhcCCCHHHHHHHHHHHHHHccCCc-----HH
Confidence 478899999995 36788999999999999999999999999999 7899999999999999999965542 34
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHhcCCCCccccc--
Q 002235 94 MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNL--QHRHPYIRRNAILAVMAIYKLPQGEQLLV-- 169 (949)
Q Consensus 94 ~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L--~d~~pyVRk~A~lal~ki~~l~~~~~li~-- 169 (949)
++|+||+|+|||+|+||++||+|||+||+|++|++++.+.|.|++++ .|++|||||+|++|++|+|+ .+|++++
T Consensus 109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~--~~p~~~~~~ 186 (621)
T 2vgl_A 109 IRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR--TSPDLVPMG 186 (621)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH--HCGGGCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--hChhhcCch
Confidence 69999999999999999999999999999999999999999999999 99999999999999999999 8999999
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchhhH------HHHHHHHHhhc---C-----------ccChhHHHHHHHHH
Q 002235 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA------INYLLTHVDRV---S-----------EWGELLQMVVLELI 229 (949)
Q Consensus 170 ~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a------i~~L~~~l~~i---~-----------~~~p~~q~~il~ll 229 (949)
+|.+.+.++| .|+|++|+.+|+.+|+++++++. ++.+.+.+.++ + ..+||+|+.+|+++
T Consensus 187 ~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 187 DWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp SCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred hHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 8999999976 89999999999999999987652 33333333322 1 23899999999999
Q ss_pred HHhhhc-CchhHHHHHHHHHHHHc------------CCch--HHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchH
Q 002235 230 RKVCRT-NKGEKGKYIKIIISLLN------------APST--AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNN 294 (949)
Q Consensus 230 ~~~~~~-~p~~~~~li~~L~~lL~------------s~s~--aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~n 294 (949)
+.|++. +|+....++++|..+++ +.|+ +|+|||+++++.+.+.++.++.++..+.. |++++|+|
T Consensus 266 ~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~-~L~~~~~n 344 (621)
T 2vgl_A 266 QCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQ-FLQHRETN 344 (621)
T ss_dssp GGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HSSCSCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhcCCCcc
Confidence 999985 57888888888887763 2344 99999999999998877777777776655 55789999
Q ss_pred HHHHHHHHHHHHHhhCh--hhHHHHHHhheeccC-CCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCC
Q 002235 295 VKLIVLDRLNELRSSHR--DIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKN 371 (949)
Q Consensus 295 vr~iaL~~L~~l~~~~p--~~l~~~~~~il~~L~-d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~ 371 (949)
+||+||+.|..+...+| .++++|...|+.||. |+|++||++||++|++++|++|++.|+.+|++++.. .|
T Consensus 345 iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~-------~d 417 (621)
T 2vgl_A 345 LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET-------AD 417 (621)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------CC
T ss_pred hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh-------cC
Confidence 99999999999999886 789999999999999 999999999999999999999999999999877653 46
Q ss_pred HHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchH-HHH
Q 002235 372 GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAA-RVC 450 (949)
Q Consensus 372 ~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~-~v~ 450 (949)
.+||+.++++|+.||.|||+.+.||+++|+++++..|+++..+++..+++++.++|+.|++++.+|++.++++... .+.
T Consensus 418 ~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li 497 (621)
T 2vgl_A 418 YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLV 497 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987654 577
Q ss_pred HHHhhhcccCCCCCCc-----HHHHHHHH
Q 002235 451 TCALWIIGEYCQSLSE-----VENGIATI 474 (949)
Q Consensus 451 ~~~lwiLGEy~~~~~~-----~~~~~~~i 474 (949)
+.++|++||||+..++ |.++++.+
T Consensus 498 ~~~~wilGEy~~~~~~~~~~~p~~~l~~l 526 (621)
T 2vgl_A 498 KVGGYILGEFGNLIAGDPRSSPLIQFNLL 526 (621)
T ss_dssp HHHHHHHHHHTHHHHSSTTSCHHHHHHHH
T ss_pred HHHHHHhcchHHHhcccCCCCHHHHHHHH
Confidence 8889999999987765 33555555
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.2e-63 Score=605.61 Aligned_cols=430 Identities=16% Similarity=0.265 Sum_probs=386.2
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch-HH
Q 002235 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE-MI 95 (949)
Q Consensus 17 ~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e-~i 95 (949)
.+.++||+.|++++.++|+++|+|++|++++|+|++++||+|++ +++++|+++||+||+|+..+.+.+ +| ++
T Consensus 34 ~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik-~~~s~~~~~Krl~Yl~~~~~~~~~------~e~~~ 106 (618)
T 1w63_A 34 KECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLK-LIASQKFTDKRIGYLGAMLLLDER------QDVHL 106 (618)
T ss_dssp HHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHH-HHHSSSHHHHHHHHHHHHHHCCCC------HHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHH-HHcCCchHHHHHHHHHHHHHhCCC------cHHHH
Confidence 46789999999999999999999999999999999999999999 568999999999999999995433 56 59
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHH
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l 175 (949)
|+||+|+|||+|+||++||+|||+||+|+.+++++.+.+.|.+++.|++|||||+|++|++++|+ .+|++++.|.+.+
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~--~~p~~v~~~~~~l 184 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR--KVPELMEMFLPAT 184 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH--HCGGGGGGGGGGT
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--HChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 8999999998888
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchhhH---------HHHHHHHHhhc------------CccChhHHHHHHHHHHHhhh
Q 002235 176 EKVLSTEQDPSAKRNAFLMLFTCDQDRA---------INYLLTHVDRV------------SEWGELLQMVVLELIRKVCR 234 (949)
Q Consensus 176 ~~~L~~d~d~~v~~~Al~~L~~i~~~~a---------i~~L~~~l~~i------------~~~~p~~q~~il~ll~~~~~ 234 (949)
..+| .|.|++|+.+|+.+|+++.+++. ++.|.+.+.++ +..+||+|+.++++++.+++
T Consensus 185 ~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 185 KNLL-NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TTST-TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHh-CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 7865 89999999999999999975531 23355555442 14689999999999999999
Q ss_pred cCchhHHHHHHHHHHHHc------CCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 235 TNKGEKGKYIKIIISLLN------APSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 235 ~~p~~~~~li~~L~~lL~------s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
.+|.....++++|..+++ +.+++|+|||+++++.+.+.+.....++..+.++ ++++|+|+||+||+.|..++.
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~-L~~~d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRF-LLNNDKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HTCSSTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHHh
Confidence 999888888899988874 3467899999999999987765555556665555 578899999999999999999
Q ss_pred hChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHcc
Q 002235 309 SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIK 388 (949)
Q Consensus 309 ~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~k 388 (949)
.+|.++++|...++.|++|+|.+||++|+++|+++++++|++.|+.+|.+++. +.+.+||..++.+|+.||.+
T Consensus 343 ~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~-------~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 343 TDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLD-------SCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHHHHS
T ss_pred hCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887654 34789999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcc-cchHHHHHHHhhhcccCCCCC
Q 002235 389 FPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQ-IRAARVCTCALWIIGEYCQSL 464 (949)
Q Consensus 389 f~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~-i~~~~v~~~~lwiLGEy~~~~ 464 (949)
|++...||++.|+++|++.+.++..+++..++++++++|++++.++.+|++++++ +....+.++++|++||||+..
T Consensus 416 ~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 416 YAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999985 555666678999999998654
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=3.8e-63 Score=598.49 Aligned_cols=441 Identities=21% Similarity=0.356 Sum_probs=394.9
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch
Q 002235 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (949)
Q Consensus 14 ~~~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e 93 (949)
..+.+++|||+.|++++.++|+++++|++|++++|+|++++||++++ +++++|+.+||+||+|++.+.+.+ +|
T Consensus 10 ~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~-l~~s~~~~~Krl~yl~l~~~~~~~------~e 82 (591)
T 2vgl_B 10 NKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN-CMQTDNLELKKLVYLYLMNYAKSQ------PD 82 (591)
T ss_dssp CSSSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH-TTSSSCHHHHHHHHHHHHHHHHHS------HH
T ss_pred ccCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHcccC------ch
Confidence 34678999999999999999999999999999999999999999999 789999999999999999997754 45
Q ss_pred H-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc--
Q 002235 94 M-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-- 170 (949)
Q Consensus 94 ~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~-- 170 (949)
+ +|++|+|+|||+|+||++|++|||+||+++.+++.+.+.+.+++++.|++|||||+|+.|++++++ .+|+.+++
T Consensus 83 ~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~--~~p~~~~~~~ 160 (591)
T 2vgl_B 83 MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD--INAQMVEDQG 160 (591)
T ss_dssp HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH--SSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh--hChhhccccc
Confidence 5 899999999999999999999999999999999999999999999999999999999999999999 89998874
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhhH--------HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHH
Q 002235 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK 242 (949)
Q Consensus 171 ~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a--------i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~ 242 (949)
|.+.+..+| .|+|++|+.+|+.+|++++++++ ...+..+++.+...+||+|+.++++++++++.++.....
T Consensus 161 ~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~ 239 (591)
T 2vgl_B 161 FLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 239 (591)
T ss_dssp HHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH
Confidence 778888866 89999999999999999987642 122333344344578999999999999999988888999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHccCC----ChHHHHH----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH
Q 002235 243 YIKIIISLLNAPSTAVIYECAGTLVSLSS----APTAIRA----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM 314 (949)
Q Consensus 243 li~~L~~lL~s~s~aV~~Eaa~~l~~l~~----~~~~l~~----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l 314 (949)
+++.+..+|++.+++|++||+++++.+.+ +++.++. ++.+++.+ . ++|+|+||+||+.|..+...+|..+
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~-~~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-L-SGEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-T-TSCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-h-cCCccHHHHHHHHHHHHHHhChHHH
Confidence 99999999999999999999999999863 3444443 34455543 3 5899999999999999999999999
Q ss_pred HHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH
Q 002235 315 VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS 394 (949)
Q Consensus 315 ~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~ 394 (949)
++|...|+ |+.++|.+||++|+++++++++++|++.++.+|.. +.. +.+.+||+.++.+|+.||.+||+.+.
T Consensus 318 ~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~----~l~---~~d~~~r~~~v~aI~~la~~~~~~~~ 389 (591)
T 2vgl_B 318 KQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE----YAT---EVDVDFVRKAVRAIGRCAIKVEQSAE 389 (591)
T ss_dssp TTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH----HTT---SSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH----HHh---cCCHHHHHHHHHHHHHHHHhChhHHH
Confidence 99988876 66566699999999999999999999999987774 333 45789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcHHHHHHHH
Q 002235 395 TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEVENGIATI 474 (949)
Q Consensus 395 ~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~i 474 (949)
|++++|+++|++.++++..+++.+++++++++|+.++.++.+|++.++++..++++++++|++||||+..+++.++++.+
T Consensus 390 ~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l 469 (591)
T 2vgl_B 390 RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF 469 (591)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777665
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=6.8e-59 Score=518.71 Aligned_cols=321 Identities=16% Similarity=0.282 Sum_probs=231.7
Q ss_pred ccHHHHHHHhcCCChHHHH-HHHHHHHHHHhCCCCC-----CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCC
Q 002235 17 AIANEIKEALEGNDVPAKV-DAMKKAIMLLLNGETL-----PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (949)
Q Consensus 17 ~~~~eir~~L~s~~~~~k~-~aL~kli~l~~~G~d~-----s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l 90 (949)
.-+||.|.+.+++.+.+|| ++|+|+||+|++|+++ +.+||+|+| +|+|+|+.+|||+|+||+.|++..
T Consensus 26 ~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~k-l~~s~d~~lKrLvYLyl~~~~~~~----- 99 (355)
T 3tjz_B 26 AVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTK-LFQSNDPTLRRMCYLTIKEMSCIA----- 99 (355)
T ss_dssp HHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGGCCCHHHHHHHHHHHHHHTTTS-----
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhCCCH-----
Confidence 3678988777777777777 6999999999999996 589999999 889999999999999999998763
Q ss_pred CchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc
Q 002235 91 LPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (949)
Q Consensus 91 ~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~ 170 (949)
+|++|+||+|+||++||||++||+|||+||+|+++++++++++.+++++.|+||||||+|++|++|+++ ..|++++.
T Consensus 100 -~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~--~~pe~v~~ 176 (355)
T 3tjz_B 100 -EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLK--CSFDVVKR 176 (355)
T ss_dssp -SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT--TCHHHHHT
T ss_pred -HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhh--HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcC-chhHHHHHHHH
Q 002235 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN-KGEKGKYIKII 247 (949)
Q Consensus 171 ~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~-p~~~~~li~~L 247 (949)
|.+.+..++ .|.||+|++||+.+|++++.++ ++.+|+..+...+..+||+|+.+|++++++++.+ |.+...+++.+
T Consensus 177 ~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l 255 (355)
T 3tjz_B 177 WVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFI 255 (355)
T ss_dssp THHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------
T ss_pred HHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 998888865 8999999999999999998754 6778887777666678999999999999999998 88899999999
Q ss_pred HHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCC
Q 002235 248 ISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNS 327 (949)
Q Consensus 248 ~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d 327 (949)
.++|+|.+++|+|||+++|+.+.+.+..+...+.+.+++|++++|||+||+||++|.++++++|.+++.|+.+|++|++|
T Consensus 256 ~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 256 ESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp -CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 99999999999999999999998755555566778889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 002235 328 PNLDIRRKTLDIVLELITPR 347 (949)
Q Consensus 328 ~d~~Ir~~aL~lL~~l~~~~ 347 (949)
+|++|++.|+++|+++|++.
T Consensus 336 ~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 336 ANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp --------------------
T ss_pred CcHhHHHHHHHHhhhccCCC
Confidence 99999999999999999873
No 5
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=5e-34 Score=302.72 Aligned_cols=223 Identities=14% Similarity=0.192 Sum_probs=192.5
Q ss_pred cccchhhhhccccccCCCCcE---------------EE-EEEEEEecceeEEEEEEEecChhh-hcceEEEEeecCCeEE
Q 002235 708 EGDDANKLNRILQLTGFSDPV---------------YA-EAYVTVHHYDIVLDVTVINRTKET-LQNLCLELATMGDLKL 770 (949)
Q Consensus 708 ~~~~~~~l~~i~qltg~~dp~---------------Y~-ea~v~v~~~~ivld~~v~N~t~~t-LqNv~vel~t~g~l~~ 770 (949)
++.|+++|++||||.+||+++ |+ .|++|+|..||||||.|+||.+|+ |+||+|.+.+.+.+++
T Consensus 11 ~~~ya~~L~~ipef~~lG~l~kSS~~pv~LTE~EtEYvV~~vKHiF~~hiVlQF~i~NTL~dq~LenVsV~~~~~d~~~~ 90 (275)
T 1r4x_A 11 QEIFQEQLAAVPEFRGLGPLFKSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEV 90 (275)
T ss_dssp HHHHHHHHHTSGGGTTSCSCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEE
T ss_pred hHHHHHHHhcChhHHHcCcccccCCCcccccCCCCceEEEEEEEecCCcEEEEEEeEEccCcEEEeeEEEEEEcCCCceE
Confidence 346777778888888887533 65 888899999999999999999998 7999999999766888
Q ss_pred eecCCcceeCCCCeeEEEEEEEEecCC----cceeeeeE-EEec----C-------CccccceEEecceeeccccccccc
Q 002235 771 VERPQNYTLAPESSKQIKANIKVSSTE----TGVIFGNI-VYET----S-------NVLERTVVVLNDIHIDIMDYISPA 834 (949)
Q Consensus 771 ~~~p~~~~l~p~~~~~i~~~~kv~s~e----~g~ifg~i-~y~~----~-------~~~~~~~~~lndi~i~i~DyI~p~ 834 (949)
++..|..+|.|++++++|+.++....+ .|. |+|+ .|.. | .|++|+| +|||++|.+.|||+|.
T Consensus 91 ~~~ipi~~L~~~~~g~~yV~l~~~~~~~~~~~~t-f~~~LkF~vke~Dp~tGe~~deGyeDEY-~lEdlel~~~D~i~p~ 168 (275)
T 1r4x_A 91 LXYVPARSLPYNQPGTCYTLVALPKEDPTAVACT-FSCMMKFTVKDCDPTTGETDDEGYEDEY-VLEDLEVTVADHIQKV 168 (275)
T ss_dssp EEEECEEEECTTCCEEEEEEEECCSSSTTCCCEE-EEEEEEEEEEEBCTTTCCBCSCCEEEEE-ECCCEEECGGGGEEEC
T ss_pred EEeeeccccCCCCCccEEEEEEcCCCccccccce-eEEEEEEEEEeccCCCCCcCCCCccceE-EccceeechhhEEeec
Confidence 899999999999999999999987422 344 8888 6874 3 3668999 9999999999999999
Q ss_pred cCChhhhHHhhcccC--cC--cEEEeeccCCCHHHHHHHHHHHcCCeecCCCCccCCCchHHHHHhhcccccCceEEEEE
Q 002235 835 VCTDAAFRTMWAEFE--WE--NKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNV 910 (949)
Q Consensus 835 ~~~~~~Fr~~W~efe--wE--nk~~v~~~~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~ge~al~n~ 910 (949)
+.+ +|++.|++++ -| .++++ +++++|+++++.|++.+||+||++++.++.+++.|++.|+|++.+|.++|+++
T Consensus 169 ~~~--nF~~~We~l~~~~E~~~tf~L-~~~~sl~~AV~~l~~~Lgm~p~e~sd~v~~~~~~HtL~LsG~~~gg~~Vlvr~ 245 (275)
T 1r4x_A 169 MKL--NFEAAWDEVGDEFEKEETFTL-STIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRS 245 (275)
T ss_dssp CCS--CHHHHHHHHCSTTCEEEEEEE-TTCCCHHHHHHHHHHHHTCEECTTTTSCCSSCSEEEEEEEEEETTTEEEEEEE
T ss_pred ccC--chHHHHHhcCCccceEEEEEc-cCcCcHHHHHHHHHHhcCCccccCCccCCCCCcceEEEEEEEEeCCcEEEEEE
Confidence 988 6999999993 23 25566 56899999999999999999999999999998999999999988888999999
Q ss_pred EEEEecCCceEEEEEEeeCChhHHHhh
Q 002235 911 SIEKQTDGKLSGYIRIRSKTQGIALSL 937 (949)
Q Consensus 911 s~~~~~~~~v~g~~riRs~~q~ia~sl 937 (949)
+|..+ ++|++++.+||++++++.-+
T Consensus 246 rl~~~--~gv~~kl~vRs~~~~v~~~v 270 (275)
T 1r4x_A 246 RLLLL--DTVTMQVTARSLEELPVDII 270 (275)
T ss_dssp EEEES--SSEEEEEEEEESSHHHHHHH
T ss_pred EEecC--CceEEEEEEEcCCHHHHHHH
Confidence 99983 38999999999999988655
No 6
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=100.00 E-value=1.4e-33 Score=307.47 Aligned_cols=222 Identities=14% Similarity=0.176 Sum_probs=194.9
Q ss_pred ccchhhhhccccccCCCCcE---------------EE-EEEEEEecceeEEEEEEEecChhh-hcceEEEEeecCCeEEe
Q 002235 709 GDDANKLNRILQLTGFSDPV---------------YA-EAYVTVHHYDIVLDVTVINRTKET-LQNLCLELATMGDLKLV 771 (949)
Q Consensus 709 ~~~~~~l~~i~qltg~~dp~---------------Y~-ea~v~v~~~~ivld~~v~N~t~~t-LqNv~vel~t~g~l~~~ 771 (949)
+.|+++|++||||.+||+++ |+ .|++|+|..||||||.|+||.+|+ |+||+|.+.+.+.|+++
T Consensus 59 ~~ya~~L~~ipef~~lG~l~kSS~~~v~LTE~EtEYvV~~vKHiF~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~~~~~ 138 (322)
T 1pzd_A 59 EIFQEQLAAVPEFQGLGPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEVL 138 (322)
T ss_dssp HHHHHHHHTCGGGTTCCCCCEECSSCEECSCTTSSEEEEEEEEECSSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEEE
T ss_pred HHHHHHHhcchhHHHcCcccccCCCcccccCCCceeEEEEEEEeccCcEEEEEEEEEccCceEEeeEEEEEecCCCceEE
Confidence 46888899999999998643 66 788899999999999999999998 79999999997669999
Q ss_pred ecCCcceeCCCCeeEEEEEEEEecC----CcceeeeeE-EEec----C-------CccccceEEecceeecccccccccc
Q 002235 772 ERPQNYTLAPESSKQIKANIKVSST----ETGVIFGNI-VYET----S-------NVLERTVVVLNDIHIDIMDYISPAV 835 (949)
Q Consensus 772 ~~p~~~~l~p~~~~~i~~~~kv~s~----e~g~ifg~i-~y~~----~-------~~~~~~~~~lndi~i~i~DyI~p~~ 835 (949)
+..|..+|.|++++++|+.|+.... ..|. |+|+ .|.. | .|++|+| +|+|++|.+.|||+|.+
T Consensus 139 ~~ip~~~L~~~~~g~~yv~~~~~~~~~~~~~~~-f~~~LkF~vke~Dp~TGe~~deGyeDEY-~lEdlel~~~D~i~p~~ 216 (322)
T 1pzd_A 139 CYVPARSLPYNQPGTCYTLVALPKEDPTAVACT-FSCVMKFTVKDCDPTTGEADDEGYEDEY-VLEDLEVTIADHIQKVM 216 (322)
T ss_dssp EEECEEEECBTCCEEEEEEEECCSSCTTCCCEE-EEEEEEEEEEEBCTTTCCBCSCCEEEEE-ECCCEEECGGGGEEECC
T ss_pred EEEEHhHCCCCCCeeEEEEEEecCCCCCccceE-EEEEEEEEEEeecCCCCCcCCCCccceE-EccceeechhhEeeecc
Confidence 9999999999999999999998742 2344 8888 6874 2 3678999 99999999999999999
Q ss_pred CChhhhHHhhcccC--cC--cEEEeeccCCCHHHHHHHHHHHcCCeecCCCCccCCCchHHHHHhhcccccCceEEEEEE
Q 002235 836 CTDAAFRTMWAEFE--WE--NKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVS 911 (949)
Q Consensus 836 ~~~~~Fr~~W~efe--wE--nk~~v~~~~~~l~~~l~~li~~tnm~~l~~~~~~~~~~~~~~~nL~~~s~~ge~al~n~s 911 (949)
.+ +|++.|++++ -| .++++ +++++|+++++.|++.+||+||++++.++.+++.|+++|+|++.+|.++|++++
T Consensus 217 ~~--nF~~~We~l~~~~E~~~tf~L-~~~~sL~~AV~~l~~~Lgm~p~e~sd~v~~~~~sHtL~LsG~~~gg~~VLvr~r 293 (322)
T 1pzd_A 217 KL--NFEAAWDEVGDEFQKEETFTL-STIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSR 293 (322)
T ss_dssp CS--CHHHHHHHHCSTTCEEEEEEE-SSCCCHHHHHHHHHHHHTCEECTTTTCCCSSCSEEEEEEEEEETTSCEEEEEEE
T ss_pred cC--chHHHHHhcCCccceEEEEEc-cCcCcHHHHHHHHHHhcCCccccCCCcCCCCCcceEEEEEEEEeCCcEEEEEEE
Confidence 88 6999999994 23 25666 568999999999999999999999999998889999999999888889999999
Q ss_pred EEEecCCceEEEEEEeeCChhHHHhh
Q 002235 912 IEKQTDGKLSGYIRIRSKTQGIALSL 937 (949)
Q Consensus 912 ~~~~~~~~v~g~~riRs~~q~ia~sl 937 (949)
|..+ ++|++++.+||++++++.-+
T Consensus 294 l~~~--~gv~~kl~vRS~~~~v~~~v 317 (322)
T 1pzd_A 294 LLLL--DTVTMQVTARSSEELPVDIV 317 (322)
T ss_dssp EEES--SSEEEEEEEEESSHHHHHHH
T ss_pred EeeC--CceEEEEEEecCCHHHHHHH
Confidence 9983 38999999999999988655
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.62 E-value=1e-13 Score=165.07 Aligned_cols=424 Identities=11% Similarity=0.085 Sum_probs=281.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhC-CC-CCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-HHHH
Q 002235 22 IKEALEGNDVPAKVDAMKKAIMLLLN-GE-TLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILIC 98 (949)
Q Consensus 22 ir~~L~s~~~~~k~~aL~kli~l~~~-G~-d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv~ 98 (949)
+...+.+++...|..++.-+-.+... +. .+...++.+++.+..+++...|..+...+..+...-+ +.. --+.
T Consensus 92 L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-----~~~~~~l~ 166 (588)
T 1b3u_A 92 LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-----SAVKAELR 166 (588)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----HHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----HHHHHHHH
Confidence 33344555555555554433333221 11 1112344455446567777778777666666533221 111 1234
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc--cccchH
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--LLVDAP 172 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~----~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~--li~~~~ 172 (949)
..+.+-++|+++.+|..|+++|+.+. .+...+.+.|.+.+++.|.++.||+.|+.++..+.. ..+. ..+.+.
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~~~ 244 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ--LLPQEDLEALVM 244 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH--HSCHHHHHHHTH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--hCCHHHHHHHHH
Confidence 55666678999999999999999873 445567889999999999999999999999999887 3332 223345
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchh--------hHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCch------
Q 002235 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQD--------RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKG------ 238 (949)
Q Consensus 173 e~l~~~L~~d~d~~v~~~Al~~L~~i~~~--------~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~------ 238 (949)
+.+..++ .|.++.|+..|+.+|..+... ..++.+.+.+ ...++..+....+.+..++..-+.
T Consensus 245 ~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 320 (588)
T 1b3u_A 245 PTLRQAA-EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM---KDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp HHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence 6666655 888999999999988877542 1233344443 356677788888888887765332
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC--hH-HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh--h
Q 002235 239 EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PT-AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD--I 313 (949)
Q Consensus 239 ~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~-~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~--~ 313 (949)
....+++.+..++++.++.|+..++.++..+... .. ....+...+..+ ++++++++|..++..|..+....+. .
T Consensus 321 ~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 399 (588)
T 1b3u_A 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQL 399 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHHH
Confidence 2456788888999999999999999999887531 11 122233334444 4678899999999999988765331 2
Q ss_pred HHHHHHhheeccCCCCHHHHHHHHHHHHhhcC----CCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC
Q 002235 314 MVDLIMDVLRALNSPNLDIRRKTLDIVLELIT----PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF 389 (949)
Q Consensus 314 l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~----~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf 389 (949)
.......+..++.|++..+|..+++.+..++. +...+.+++.+.+ ... |.+.++|..++.+++.++..+
T Consensus 400 ~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~----~l~---d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA----WLV---DHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHH----GGG---CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH----Hhc---CCcHHHHHHHHHHHHHHHHHh
Confidence 23344556667889999999999998887653 1112345554443 333 567899999999999999877
Q ss_pred ccc--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCC
Q 002235 390 PEV--ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK--LRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 390 ~~~--~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~ 465 (949)
++. .+.+++.|.+++.+.+..++..++..+..+....+. ....++..|...+.| ..+.++..++|.+|+.+....
T Consensus 473 ~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-PVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp CHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGC-SCHHHHHHHHHHHHHHGGGSC
T ss_pred CchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHHHHHHhc
Confidence 653 234555666666666556666777777777654322 224566677777666 457899999999999987654
No 8
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.56 E-value=3.8e-13 Score=162.74 Aligned_cols=424 Identities=11% Similarity=0.107 Sum_probs=293.7
Q ss_pred HHHHHHHhcCCChHHHH-HHHHHHHHHHhCCCCCCchhHHHHHh---hcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH
Q 002235 19 ANEIKEALEGNDVPAKV-DAMKKAIMLLLNGETLPQLFITIVRY---VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM 94 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~-~aL~kli~l~~~G~d~s~lf~~Vik~---l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~ 94 (949)
..++-+.+.+++...|+ -+| ++....+.-+.+.+-+++. -+.++|...|-++--++..+. . +++
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl----~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~------~~~ 139 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYL----GAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--S------SEM 139 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--C------HHH
T ss_pred HHHHHHHHcCCchHHHHHHHH----HHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--C------HHH
Confidence 34666678888776554 333 2233333334444433332 347888888888777777662 2 455
Q ss_pred -HHHHHHHHhhcCCCCHHHHHHHHHHhhcCC--chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc----
Q 002235 95 -ILICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL---- 167 (949)
Q Consensus 95 -iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~--~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l---- 167 (949)
--+...+.+-|.|+|++||-.|+.++.++. .|++++.+.+.+.+++.|++|.|+-+|+.++..+.. .+|+.
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~--~~~~~~~~~ 217 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE--RSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC--SHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH--hChHHHHHH
Confidence 235688889999999999999999999985 699999999999999999999999999999999988 66653
Q ss_pred ---ccchHHHHHHHHc----------cCCChhHHHHHHHHHHhcchhhH------HHHHHHHHhhcC---ccChhHHHHH
Q 002235 168 ---LVDAPEMIEKVLS----------TEQDPSAKRNAFLMLFTCDQDRA------INYLLTHVDRVS---EWGELLQMVV 225 (949)
Q Consensus 168 ---i~~~~e~l~~~L~----------~d~d~~v~~~Al~~L~~i~~~~a------i~~L~~~l~~i~---~~~p~~q~~i 225 (949)
++.+.+++..++. ...||..+...+.+|..+.+.++ .+.|.+++.... ..++......
T Consensus 218 ~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea 297 (618)
T 1w63_A 218 RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYET 297 (618)
T ss_dssp HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 2222233333221 13578888888888777665431 334444443221 2345566677
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 002235 226 LELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLN 304 (949)
Q Consensus 226 l~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~ 304 (949)
++.+..+.. ++.......+.|..+|.++++.|+|-|..++..+.. .|..++.....++..+ +++|..+|..+++.|.
T Consensus 298 ~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l-~d~d~~Ir~~alelL~ 375 (618)
T 1w63_A 298 VLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL-KDLDVSIKRRAMELSF 375 (618)
T ss_dssp HHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-GSSCHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-cCCChhHHHHHHHHHH
Confidence 777766533 455556678889999999999999999999988853 3444433333444444 7889999999999999
Q ss_pred HHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHH
Q 002235 305 ELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAI 382 (949)
Q Consensus 305 ~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI 382 (949)
.+.... -+...+..++..+.+.|.++|+.++..+..++.. .+....++.|.+-+.. .+..++.+++..+
T Consensus 376 ~l~~~~--nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~-------~~~~v~~~~~~~l 446 (618)
T 1w63_A 376 ALVNGN--NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT-------AGSYVRDDAVPNL 446 (618)
T ss_dssp HHCCSS--STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH-------TGGGSCSSHHHHH
T ss_pred HHcccc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh-------ccchhHHHHHHHH
Confidence 997532 2344445566667788999999999999999874 6888888888854442 2346777788999
Q ss_pred HHhHccCcccHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHhCcc-----------cHHHHHHHHHHHhcc-cchHH
Q 002235 383 HSCAIKFPEVASTVVHLLMDFLGDS--NVASAIDVIIFVREIIEMNPK-----------LRVSIITRLLDNFYQ-IRAAR 448 (949)
Q Consensus 383 ~~la~kf~~~~~~~l~~L~~lL~~~--~~~v~~e~i~~l~~ii~~~p~-----------~~~~~l~~L~~~l~~-i~~~~ 448 (949)
..+..++|+....++..|.++|.+. .+.....++..+.+.....++ .-..++..|..+++. -..+.
T Consensus 447 ~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 526 (618)
T 1w63_A 447 IQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSV 526 (618)
T ss_dssp HHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHH
Confidence 9999999999999999999999863 334445567777777543211 112345555555543 35678
Q ss_pred HHHHHhhhcccCCCCCCcH
Q 002235 449 VCTCALWIIGEYCQSLSEV 467 (949)
Q Consensus 449 v~~~~lwiLGEy~~~~~~~ 467 (949)
++..++|.++.++-..++.
T Consensus 527 vr~~~lta~~Kl~~~~~~~ 545 (618)
T 1w63_A 527 TRGYALTAIMKLSTRFTCT 545 (618)
T ss_dssp HHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHhCcch
Confidence 9999999999887766543
No 9
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=1.8e-13 Score=148.27 Aligned_cols=253 Identities=13% Similarity=0.027 Sum_probs=181.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
.++.|.+.|.|+|+.+|..|++.|+++..++.+ +.+.+++.|+++.||+.|+.++.++.. .+..++...+++.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAV----RLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHH----HHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHHHHHH
Confidence 458888999999999999999999999987654 455678899999999999999998865 2223333344554
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCch
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (949)
..+..|.|+.|+..|+.+|..+.... |.....+++.|..+|++.++
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~----------------------------------~~~~~~~~~~L~~~l~d~~~ 142 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKN----------------------------------PIYSPKIVEQSQITAFDKST 142 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHC----------------------------------GGGHHHHHHHHHHHTTCSCH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccC----------------------------------CcccHHHHHHHHHHhhCCCH
Confidence 33448889999999988887754322 11122455677777888889
Q ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHH
Q 002235 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKT 336 (949)
Q Consensus 257 aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~a 336 (949)
.|+..|+.++..+... . +...++.++ .++++.+|..++..|..+....|.++.. +..++.|++..+|..+
T Consensus 143 ~vR~~a~~aL~~~~~~-~----~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~~~----L~~~l~d~~~~vR~~A 212 (280)
T 1oyz_A 143 NVRRATAFAISVINDK-A----TIPLLINLL-KDPNGDVRNWAAFAININKYDNSDIRDC----FVEMLQDKNEEVRIEA 212 (280)
T ss_dssp HHHHHHHHHHHTC----C----CHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCCHHHHHH----HHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH-H----HHHHHHHHH-cCCCHHHHHHHHHHHHhhccCcHHHHHH----HHHHhcCCCHHHHHHH
Confidence 9999999999888642 1 334455544 6788899999999998885445555443 5567788999999999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCC-cccHHHH
Q 002235 337 LDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN-VASAIDV 415 (949)
Q Consensus 337 L~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~-~~v~~e~ 415 (949)
+..|..++++..+..++..|. + +++|..++.+++.++.. .+++.|.+++.+.. +.+..++
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~-----------d--~~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELK-----------K--NTVYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHT-----------S--SSCCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred HHHHHHhCCHhhHHHHHHHhc-----------C--ccHHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcHHHHHH
Confidence 999999998887777665331 1 23888899999888752 45777777776543 3344444
Q ss_pred HHHH
Q 002235 416 IIFV 419 (949)
Q Consensus 416 i~~l 419 (949)
+..+
T Consensus 274 ~~~l 277 (280)
T 1oyz_A 274 IDKL 277 (280)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.53 E-value=4e-13 Score=161.75 Aligned_cols=421 Identities=11% Similarity=0.146 Sum_probs=262.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-HHH
Q 002235 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILI 97 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv 97 (949)
..++-+.+.+++...|+-+-.-+..+.-...++-.+....++.-+.++|..+|.++.-++..+ .. +++ --+
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~-----~~~~~~l 122 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RV-----DKITEYL 122 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CS-----GGGHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---Ch-----HHHHHHH
Confidence 456666888888877664332222221111122222233333346888999998875554443 32 555 456
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCC--chhhHH--HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc-----ccc
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIE--PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE-----QLL 168 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~--~~el~~--~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~-----~li 168 (949)
...+.+-+.|+|++||-.|..++.++. .|+.++ .+++.+.++|.|++|.||.+|+.++..+.. ..| ++.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~--~~~~~~~~~l~ 200 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE--SHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT--SCCSCCSCCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh--hCCCccchhcc
Confidence 788999999999999999999999874 588887 588999999999999999999999999987 443 222
Q ss_pred cch-HHHHHH---------------------------------H--HccCCChhHHHHHHHHHHhcch-----hhHHH--
Q 002235 169 VDA-PEMIEK---------------------------------V--LSTEQDPSAKRNAFLMLFTCDQ-----DRAIN-- 205 (949)
Q Consensus 169 ~~~-~e~l~~---------------------------------~--L~~d~d~~v~~~Al~~L~~i~~-----~~ai~-- 205 (949)
+.. ..++.. + ++.+.|+.|+..|+.++..+.+ ...++
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 221 112211 1 0244556666666666666532 11121
Q ss_pred --HHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHH
Q 002235 206 --YLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTY 283 (949)
Q Consensus 206 --~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~l 283 (949)
.+...+-.+...++-.+...++.+.++....|......+..+. ++.+....|+.+|..++..+.+.. -+..+...+
T Consensus 281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~-nv~~iv~~L 358 (591)
T 2vgl_B 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQA-NIAQVLAEL 358 (591)
T ss_dssp HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSS-THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-eccCChHHHHHHHHHHHHHHCChh-hHHHHHHHH
Confidence 1111111122245556666666666665544443222112111 111333567777777777765432 233344444
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Q 002235 284 SQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI--TPRNINEVVLMLKKEVV 361 (949)
Q Consensus 284 i~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~--~~~Nv~~Iv~~L~kel~ 361 (949)
... +.+.|..+|-.+++.|..++.++|.....++..++.++.+.+.+++..++..+..+. .+.--+.++..|.+.
T Consensus 359 ~~~-l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~-- 435 (591)
T 2vgl_B 359 KEY-ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCEN-- 435 (591)
T ss_dssp HHH-TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHT--
T ss_pred HHH-HhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH--
Confidence 443 367788999999999999999998888888888888899999999998888777764 233323344444322
Q ss_pred HhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHh
Q 002235 362 KTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNF 441 (949)
Q Consensus 362 ~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l 441 (949)
... ..+++.+..++-.||+.+...+. ...++..+++-+.+....+...++..+..+..+.|+.....+.++++..
T Consensus 436 --l~~--~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~ 510 (591)
T 2vgl_B 436 --LDS--LDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLA 510 (591)
T ss_dssp --TTT--CCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred --HHh--ccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 211 34577888888888888776654 4566676666555666666677788888888888887666677777765
Q ss_pred -cccchHHHHHHHhhhccc
Q 002235 442 -YQIRAARVCTCALWIIGE 459 (949)
Q Consensus 442 -~~i~~~~v~~~~lwiLGE 459 (949)
.+..+++++.++...++-
T Consensus 511 ~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 511 TQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HTTCCCHHHHHHHHHHHTT
T ss_pred hhcCCChHHHHHHHHHHHH
Confidence 455567776655444443
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.52 E-value=2.8e-12 Score=147.65 Aligned_cols=352 Identities=13% Similarity=0.122 Sum_probs=248.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcC----Cchh---hHH--HHHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCCCc
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRL----NETE---IIE--PLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGE 165 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I----~~~e---l~~--~l~~~I~~~L~d~-~pyVRk~A~lal~ki~~l~~~~ 165 (949)
+.+..+.+.|+++++.+|-.|++.|.++ .++. +++ .++|.+.+.+.+. ++.||..|+.++.++.. ..+
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~--~~~ 97 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS--GNS 97 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS--SCH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCH
Confidence 3456677788899999999999999886 2332 232 5788889999998 99999999999999988 555
Q ss_pred cccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHH
Q 002235 166 QLLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELI 229 (949)
Q Consensus 166 ~li~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll 229 (949)
+... ...+.+-.+| .+.|+.++..|+.+|..+..+. +++.|.+++.. ..++-.+...+..+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWAL 174 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 4322 2344555555 7789999999999999886532 24445555431 35677789999999
Q ss_pred HHhhhcC-ch----hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHH-----HHHHHHHHHHccCCchHHHHH
Q 002235 230 RKVCRTN-KG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIR-----AAANTYSQLLLSQSDNNVKLI 298 (949)
Q Consensus 230 ~~~~~~~-p~----~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~-----~~a~~li~lll~~~d~nvr~i 298 (949)
..++... |. .....++.|..++++.++.|+..|+.++.++... +...+ .+...+++++ .++++.++..
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~ 253 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSP 253 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHH
Confidence 9998654 32 2356788999999999999999999999999754 22222 1345666665 6788999999
Q ss_pred HHHHHHHHHhhChhhHH-----HHHHhheeccCCCCHHHHHHHHHHHHhhcC--CCcHHH-----HHHHHHHHHHHhccC
Q 002235 299 VLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINE-----VVLMLKKEVVKTQSG 366 (949)
Q Consensus 299 aL~~L~~l~~~~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~~L~kel~~~~~~ 366 (949)
++..|..+....+...+ ..+..++.++.+++..+|+.++..|..++. +..... +++.|.+-+.
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----- 328 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ----- 328 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-----
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-----
Confidence 99999999876554221 244556778899999999999999999984 334433 3333433222
Q ss_pred CccCCHHHHHHHHHHHHHhHccC-cccH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccH----------
Q 002235 367 ELEKNGEYRQMLIQAIHSCAIKF-PEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR---------- 430 (949)
Q Consensus 367 ~~d~~~e~r~~lv~aI~~la~kf-~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~---------- 430 (949)
+.+.++|..++.+|+.++... |... ..+++.|+++|.+....+...++.++..++...+...
T Consensus 329 --~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~ 406 (450)
T 2jdq_A 329 --TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406 (450)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHH
T ss_pred --cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHH
Confidence 346799999999999998763 3222 2478899999998877788888889988887544321
Q ss_pred -HHH-----HHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 431 -VSI-----ITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 431 -~~~-----l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
..+ +.+|.....+ ...+++..++++++.|-
T Consensus 407 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 407 CALIEEAYGLDKIEFLQSH-ENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHCHHHHHHHHCH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHC
Confidence 111 3344333332 34567888888777664
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.51 E-value=2.2e-12 Score=153.55 Aligned_cols=390 Identities=12% Similarity=0.077 Sum_probs=241.6
Q ss_pred hcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCC---chhhHHHHHHHHH
Q 002235 62 VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ETEIIEPLIPSVL 137 (949)
Q Consensus 62 l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~---~~el~~~l~~~I~ 137 (949)
++.+++..+|+.+--.+..+....+. +.+ -.+...+.+=.+++++.+|..|.+.++.+. .+.+.+.+.|.+.
T Consensus 95 l~~~~~~~vR~~a~~~L~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~ 170 (588)
T 1b3u_A 95 LATVEETVVRDKAVESLRAISHEHSP----SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170 (588)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTSCH----HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455556666655555554332221 001 011223333335566677777666665543 2345566777777
Q ss_pred HhccCCChHHHHHHHHHHHHHhcCCCCc-c-cccchHHHHHHHHccCCChhHHHHHHHHHHhcchh----hHHHHHHHHH
Q 002235 138 QNLQHRHPYIRRNAILAVMAIYKLPQGE-Q-LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----RAINYLLTHV 211 (949)
Q Consensus 138 ~~L~d~~pyVRk~A~lal~ki~~l~~~~-~-li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~----~ai~~L~~~l 211 (949)
+.+.|+++.||+.|+.++.++.. ..+ + ..+...+.+..++ .|.++.|+..|+..|..+... ...+.+...+
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 247 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAK--VLELDNVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHH--TSCHHHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHH--HhcHHhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888899888888888877 332 1 2233445555544 777888888888777765432 1122222222
Q ss_pred hh-cCccChhHHHHHHHHHHHhhhcC-c-hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC--h-----HHHHHHHH
Q 002235 212 DR-VSEWGELLQMVVLELIRKVCRTN-K-GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--P-----TAIRAAAN 281 (949)
Q Consensus 212 ~~-i~~~~p~~q~~il~ll~~~~~~~-p-~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~-----~~l~~~a~ 281 (949)
.. +...++..+...++.+..++..- + .....+++.+..+++..++.|+..|+.++..+... + ..+..+..
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 327 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence 22 23444556777777777776532 1 12345778888888888888998888887765321 1 12323333
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHhhCh-hhH-HHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 002235 282 TYSQLLLSQSDNNVKLIVLDRLNELRSSHR-DIM-VDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKE 359 (949)
Q Consensus 282 ~li~lll~~~d~nvr~iaL~~L~~l~~~~p-~~l-~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~ke 359 (949)
.+.. +++++++.+|..++..|..++...+ ..+ ......++.++.|++..||..++..+..++..-..+...+.+...
T Consensus 328 ~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~ 406 (588)
T 1b3u_A 328 CIKE-LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 406 (588)
T ss_dssp HHHH-HHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333 4477888999998888888765322 111 223344566788999999999988777766543322222223333
Q ss_pred HHHhccCCccCCHHHHHHHHHHHHHhHccCccc--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcc--cHHHHHH
Q 002235 360 VVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV--ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK--LRVSIIT 435 (949)
Q Consensus 360 l~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~--~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~l~ 435 (949)
+..... +.+..+|..++.+|+.++..++.. .+.+++.++..|.+....+...++..+..++...+. ....++.
T Consensus 407 l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 407 IVELAE---DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 333333 567889999999999998765433 256889999999998888888889998888875433 1244556
Q ss_pred HHHHHhcccchHHHHHHHhhhcccCCCC
Q 002235 436 RLLDNFYQIRAARVCTCALWIIGEYCQS 463 (949)
Q Consensus 436 ~L~~~l~~i~~~~v~~~~lwiLGEy~~~ 463 (949)
.|...+.+ ....++..++|++|..+..
T Consensus 484 ~l~~~~~~-~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 484 KVLAMSGD-PNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHTTTC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHh
Confidence 66655443 4568999999999987653
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.42 E-value=1.9e-10 Score=144.08 Aligned_cols=430 Identities=15% Similarity=0.114 Sum_probs=289.6
Q ss_pred cHHHHHHHhc---CCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH
Q 002235 18 IANEIKEALE---GNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM 94 (949)
Q Consensus 18 ~~~eir~~L~---s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~ 94 (949)
.++++.+.|+ +++...|..|-+.|-.+.. -.++...+..++.. +.+.+..+|.++-++++..-+.. -.++-++.
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~~~~~l~~il~~-~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~ 87 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTK-LKSEDEPTRSLSGLILKNNVKAH-FQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHH
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHc-cCCCCHHH
Confidence 4556666654 7788888888777754321 11222345555542 26788899999999998763221 01121332
Q ss_pred -HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc-
Q 002235 95 -ILICQNLRNNLQHPNEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV- 169 (949)
Q Consensus 95 -iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~---~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~- 169 (949)
-.+-+.+.+-|.++++.+|..+..+++.|.. +.--+.+.+.+.+++.+.++.+|..|+.++++++. ..+....
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~--~~~~~~~~ 165 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE--DSAEILDS 165 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHH--HHTTHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--HhHHHhch
Confidence 4566777777899999999999999988853 33445678888899999999999999999999998 5554321
Q ss_pred -----chHHHHHHHH--ccCCChhHHHHHHHHHHhcchhh--H----H-HHHHHHHhhcCccChhHHHHHHHHHHHhhhc
Q 002235 170 -----DAPEMIEKVL--STEQDPSAKRNAFLMLFTCDQDR--A----I-NYLLTHVDRVSEWGELLQMVVLELIRKVCRT 235 (949)
Q Consensus 170 -----~~~e~l~~~L--~~d~d~~v~~~Al~~L~~i~~~~--a----i-~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~ 235 (949)
.+..++..++ ..+.++.|+..|+.+|..+.... . + ..+..++......++-.+..+++.+..++..
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 1233333322 36889999999999998765321 1 1 2222333334456777788888888888776
Q ss_pred Cchh----HHHHHHHHHHHHcCCchHHHHHHHHHHHccCCCh-------HHHHHHHHHHHHHHc----------cC----
Q 002235 236 NKGE----KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAP-------TAIRAAANTYSQLLL----------SQ---- 290 (949)
Q Consensus 236 ~p~~----~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~-------~~l~~~a~~li~lll----------~~---- 290 (949)
.|.. ...+++.+..++++.++.|+.+|+..+..+...+ ..+..+...++..+. .+
T Consensus 246 ~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp CHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 5543 3457788888889999999999999888875421 112233444444442 22
Q ss_pred -------CchHHHHHHHHHHHHHHhhChh-hHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCC------cHHHHHHHH
Q 002235 291 -------SDNNVKLIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR------NINEVVLML 356 (949)
Q Consensus 291 -------~d~nvr~iaL~~L~~l~~~~p~-~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~------Nv~~Iv~~L 356 (949)
.+.++|..+...|..++...|. ++......+...+.++++.+|..|+..+..++... -+..++..|
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3457899999999999876554 34444455556778999999999999999987633 234444444
Q ss_pred HHHHHHhccCCccCCHHHHHHHHHHHHHhHccC-----cccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcc---
Q 002235 357 KKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-----PEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK--- 428 (949)
Q Consensus 357 ~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf-----~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~--- 428 (949)
..... |.+..+|..+..+++.++.-. ......+++.|++.|.+....+...+..++..+.+..+.
T Consensus 406 ----~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 406 ----IQCLS---DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp ----HHHTT---CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ----HHHcC---CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence 44444 678899999999999988643 344578899999999988878888888888888764322
Q ss_pred -cHHHHHHHHHHHhcccchHH--HHHHHhhhccc
Q 002235 429 -LRVSIITRLLDNFYQIRAAR--VCTCALWIIGE 459 (949)
Q Consensus 429 -~~~~~l~~L~~~l~~i~~~~--v~~~~lwiLGE 459 (949)
.-..++..|+..+.+.+... +...+++.+.+
T Consensus 479 ~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 479 PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp GGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 23567788888876544332 33445555543
No 14
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.40 E-value=1.8e-11 Score=152.01 Aligned_cols=354 Identities=10% Similarity=0.089 Sum_probs=247.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc--ccc---chH
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ--LLV---DAP 172 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~--li~---~~~ 172 (949)
+..+.++|.++++.+|..|++.++.+....+....+|.+.++|.+.++.||.+|+.++.++.. ..+. .+. ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~--~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--SHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC--CChhHHHHHhccChH
Confidence 467889999999999999999999888788888999999999999999999999999999987 3321 111 223
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHH-
Q 002235 173 EMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKG- 241 (949)
Q Consensus 173 e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~- 241 (949)
+.+-.+|..+.|+.++.+|+.+|..+..+. +++.|+.+++ ..++-.|...+..|..++...+..+.
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG---SPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 333344545669999999999998875432 3444555543 45788899999999999876554433
Q ss_pred ----HHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHH-----HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhC-
Q 002235 242 ----KYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH- 310 (949)
Q Consensus 242 ----~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~-----~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~- 310 (949)
..++.|..+|.+.+..|+..|+.++..+.. +++... ..+..+++++.+.+....+..+...|..|....
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 356788999999888888888777776653 222111 134567777765555567777788787776421
Q ss_pred --hhhHH-HHHHhheeccCCCCHHHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHH
Q 002235 311 --RDIMV-DLIMDVLRALNSPNLDIRRKTLDIVLELITPR----NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH 383 (949)
Q Consensus 311 --p~~l~-~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~----Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~ 383 (949)
+.++. ..+..++.++.+++..+++.++.+|..++... .+..++..|.+-+ . +.+.+.|..++.+|+
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL----~---~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----G---SDDINVVTCAAGILS 424 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT----T---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH----c---CCCHHHHHHHHHHHH
Confidence 12222 23455777889999999999999999987533 3566676665432 2 357899999999999
Q ss_pred HhHccCcccH-----HHHHHHHHHHHhCCCc--ccHHHHHHHHHHHHHhCccc---H-----HHHHHHHHHHhcccchHH
Q 002235 384 SCAIKFPEVA-----STVVHLLMDFLGDSNV--ASAIDVIIFVREIIEMNPKL---R-----VSIITRLLDNFYQIRAAR 448 (949)
Q Consensus 384 ~la~kf~~~~-----~~~l~~L~~lL~~~~~--~v~~e~i~~l~~ii~~~p~~---~-----~~~l~~L~~~l~~i~~~~ 448 (949)
.++...+... ...++.|+++|.+.+. .+...++..|..|....++. + ..++..|++.+.+-..+.
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence 9987544322 2467888998886432 57777888888886555542 1 235778888887766668
Q ss_pred HHHHHhhhcccCCCC
Q 002235 449 VCTCALWIIGEYCQS 463 (949)
Q Consensus 449 v~~~~lwiLGEy~~~ 463 (949)
++..++|+||..+..
T Consensus 505 v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 505 LIKATVGLIRNLALC 519 (780)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.40 E-value=8.8e-11 Score=147.21 Aligned_cols=382 Identities=15% Similarity=0.124 Sum_probs=261.9
Q ss_pred CCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHH
Q 002235 64 PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSV 136 (949)
Q Consensus 64 ~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~-------~~el~~~l~~~I 136 (949)
.++|...||-+.-.+..+.. + |+.....-.+..++.+.++.+|-.|.-.|-+.. .++.-+.+-..+
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~-~------p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~l 95 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQ-Y------PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSEC 95 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTT-S------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHh-C------CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 57899999999999888732 2 565444445555678889999999886665432 455667778888
Q ss_pred HHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH-----------HH
Q 002235 137 LQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA-----------IN 205 (949)
Q Consensus 137 ~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a-----------i~ 205 (949)
.+++.++++.||+.|+.++..|.+. .++..-|++.+.+.+.+ .+.|+.++..|+.+|..+..+.+ +.
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~-~~~~~wp~ll~~L~~~l-~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASK-GELQNWPDLLPKLCSLL-DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHH-TTTTTCTTHHHHHHHHH-SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh-cCccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 8889999999999999999999983 23333333333333444 67789999999998888764421 22
Q ss_pred HHHH-HHhhcCccChhHHHHHHHHHHHhhhcCchh----HHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHH----
Q 002235 206 YLLT-HVDRVSEWGELLQMVVLELIRKVCRTNKGE----KGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APTA---- 275 (949)
Q Consensus 206 ~L~~-~l~~i~~~~p~~q~~il~ll~~~~~~~p~~----~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~---- 275 (949)
.+.. +++-+...++-.+...++.+..+....+.. ...+++.+..++++.++.|+..|++++..+.. .+..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 2322 223344566777888899988877654432 24677888888899999999999999988743 2322
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhC------hhhHHHHHHhheecc-----------CC-----------
Q 002235 276 IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH------RDIMVDLIMDVLRAL-----------NS----------- 327 (949)
Q Consensus 276 l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~------p~~l~~~~~~il~~L-----------~d----------- 327 (949)
+..+...+++.+ .+.++.+|..+++.+..++... +..+...+..++..+ .|
T Consensus 254 l~~l~~~l~~~~-~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 254 MHNIVEYMLQRT-QDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 333444445544 6788999999999998886521 112223333333333 33
Q ss_pred CCHHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc----ccHHHHHHHH
Q 002235 328 PNLDIRRKTLDIVLELIT---PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP----EVASTVVHLL 400 (949)
Q Consensus 328 ~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~----~~~~~~l~~L 400 (949)
++..+|+.+...+..++. +.-+..+++.|. .... +.+...|..++.+++.++...+ +..+.+++.+
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~----~~l~---~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRDELLPHILPLLK----ELLF---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHH----HHHT---CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHhc---CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344678777776665543 444455555443 3333 4578999999999999987443 3457889999
Q ss_pred HHHHhCCCcccHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCC
Q 002235 401 MDFLGDSNVASAIDVIIFVREIIEMN-----PKLRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQS 463 (949)
Q Consensus 401 ~~lL~~~~~~v~~e~i~~l~~ii~~~-----p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~ 463 (949)
+..+.+....++..+...+..+.... ......++..|++.+.+ ..+.++..++|.+|.++..
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 99999998888888888877766532 22345788888888876 4678999999999987643
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.38 E-value=4.7e-11 Score=141.45 Aligned_cols=316 Identities=14% Similarity=0.138 Sum_probs=228.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCc----hh---hH-HHHHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNE----TE---II-EPLIPSVLQNLQHR-HPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~----~e---l~-~~l~~~I~~~L~d~-~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
+..|.+.|+++++.+|-.|+..|.++.. +. ++ ..++|.+.++|.+. ++.||..|+.++.++.. ..++..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~--~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS--GTSAQT 166 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHHH
Confidence 4566677889999999999999988742 21 11 24678899999997 99999999999999988 554332
Q ss_pred c-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHHHHh
Q 002235 169 V-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKV 232 (949)
Q Consensus 169 ~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~ 232 (949)
. ...+.+-.+| .+.++.++..|+.+|..+..+. +++.|..++. ..++-.+..++..+..+
T Consensus 167 ~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG---SCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc---cCCHHHHHHHHHHHHHH
Confidence 2 2344454555 6788999999999999986431 2444555444 35666788889999998
Q ss_pred hhcC-ch----hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCCchHHHHHHHH
Q 002235 233 CRTN-KG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 233 ~~~~-p~----~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~ 301 (949)
+... |. ....+++.|..+|.+.++.|+..|+.+|.++... +...+. +...++.++ .++++.++..++.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALR 321 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHH
Confidence 8654 32 2345778899999999999999999999999754 332322 234556655 6788999999999
Q ss_pred HHHHHHhhChhhHH-----HHHHhheeccCCCCHHHHHHHHHHHHhhcC--CCcHHH-----HHHHHHHHHHHhccCCcc
Q 002235 302 RLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINE-----VVLMLKKEVVKTQSGELE 369 (949)
Q Consensus 302 ~L~~l~~~~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~~L~kel~~~~~~~~d 369 (949)
.|..|+...+...+ ..+..++.+|.+++..+|..|+..|..++. +..+.. +++.|.+-+. +
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~-------~ 394 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE-------V 394 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-------H
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-------c
Confidence 99999865554322 234557778899999999999999999984 333332 2334443322 3
Q ss_pred CCHHHHHHHHHHHHHhHccCcc---cH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCc
Q 002235 370 KNGEYRQMLIQAIHSCAIKFPE---VA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNP 427 (949)
Q Consensus 370 ~~~e~r~~lv~aI~~la~kf~~---~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p 427 (949)
.+.+++..++.+|+.++....+ .. ..+++.|+++|.+....+...++.++..++...+
T Consensus 395 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999999875432 11 2367889999988877778888888888887544
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.36 E-value=1.7e-10 Score=132.56 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=203.8
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHhhcCCc--hhhH-----HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 97 ICQNLRNNLQHP-NEYIRGVTLRFLCRLNE--TEII-----EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 97 v~NsL~KDL~~~-N~~iR~~ALr~L~~I~~--~el~-----~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
++..|.+-|+++ ++.+|-.|+++|+++.. ++.. ..++|.+.+++.++++.||..|+.++.++.. ..++..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~--~~~~~~ 142 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG--DSTMCR 142 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc--CCHHHH
Confidence 345666677777 89999999999998864 2221 3578899999999999999999999999988 554322
Q ss_pred c-----chHHHHHHHHccCCChhHHHHHHHHHHhcchh-----------hHHHHHHHHHhhcCccChhHHHHHHHHHHHh
Q 002235 169 V-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD-----------RAINYLLTHVDRVSEWGELLQMVVLELIRKV 232 (949)
Q Consensus 169 ~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~-----------~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~ 232 (949)
. ...+.+-.+|..+.++.++.+|+.+|..+... .+++.|.+++. ..++..+...+..+..+
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF---VSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHH
Confidence 1 23445556564457899999999999987632 24566665554 46788888899999998
Q ss_pred hhcCchhH-----HHHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHH-----HHHHHHHHHHccCCchHHHHHHHH
Q 002235 233 CRTNKGEK-----GKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIR-----AAANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 233 ~~~~p~~~-----~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~-----~~a~~li~lll~~~d~nvr~iaL~ 301 (949)
+...+... ...++.|..+|.+.++.|+..|++++.++... +...+ .+...+++++ +++++.+|..++.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~ 298 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACW 298 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHH
Confidence 87654332 23578888999999999999999999999754 22221 1344555655 6788999999999
Q ss_pred HHHHHHhhChhhHH-----HHHHhheeccCCCCHHHHHHHHHHHHhhcC---CCcHHHHHH-HHHHHHHHhccCCccCCH
Q 002235 302 RLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT---PRNINEVVL-MLKKEVVKTQSGELEKNG 372 (949)
Q Consensus 302 ~L~~l~~~~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~-~L~kel~~~~~~~~d~~~ 372 (949)
.|..|+...+...+ .....++.++.+++..+|+.+..+|..++. +..+..++. .+...+..... +.+.
T Consensus 299 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~ 375 (450)
T 2jdq_A 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT---VMDS 375 (450)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGG---SSCH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhc---CCCH
Confidence 99999865544332 344556777889999999999999999864 344443332 12223333443 4578
Q ss_pred HHHHHHHHHHHHhHcc
Q 002235 373 EYRQMLIQAIHSCAIK 388 (949)
Q Consensus 373 e~r~~lv~aI~~la~k 388 (949)
+++..++.+|..++..
T Consensus 376 ~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 376 KIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988864
No 18
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.36 E-value=3.1e-10 Score=139.07 Aligned_cols=417 Identities=15% Similarity=0.107 Sum_probs=285.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhCCCC-C-------CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch
Q 002235 22 IKEALEGNDVPAKVDAMKKAIMLLLNGET-L-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (949)
Q Consensus 22 ir~~L~s~~~~~k~~aL~kli~l~~~G~d-~-------s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e 93 (949)
|+..+.+++..++..+.+-+ ..+..|-. + ......+++ +++|++...++-++-++...+ .++ +.++-
T Consensus 252 ~~~~~~~~~~~~~~~a~~al-t~i~~g~~~~~~~~~~~~G~v~~li~-Ll~s~~~~~q~~A~~al~~aa-~~~--~~R~~ 326 (810)
T 3now_A 252 IKDKLLAPDMESKVRVTVAI-TALLNGPLDVGNQVVAREGILQMILA-MATTDDELQQRVACECLIAAS-SKK--DKAKA 326 (810)
T ss_dssp HHHHHSSCCHHHHHHHHHHH-HHHHSSSHHHHHHHHHTTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHT-TSH--HHHHT
T ss_pred HHHHhccCChHhHHHHHHHH-HHHhcCCHHHHHHHHhccchHHHHHH-HhCCCCHHHHHHHHHHHHHHc-CCc--HHHHH
Confidence 66777888999999887644 45556642 1 245566777 558999899888887777652 221 11121
Q ss_pred HH-HHHHHHHhhcCCCCHHHHHHHHHHhhcCCc--------hhh----HHHHHHHHHHhccCC--ChHHHHHHHHHHHHH
Q 002235 94 MI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNE--------TEI----IEPLIPSVLQNLQHR--HPYIRRNAILAVMAI 158 (949)
Q Consensus 94 ~i-Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~--------~el----~~~l~~~I~~~L~d~--~pyVRk~A~lal~ki 158 (949)
++ .-+..|.+=++++++.+|-.|+-+||++.. +.+ ++.+.+.+++.|.|+ ++-||+.|+-++..+
T Consensus 327 I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL 406 (810)
T 3now_A 327 LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL 406 (810)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 21 123566666678899999999999999852 122 567899999999988 899999999999988
Q ss_pred hcCCCCcccccc------hHHHHHHHHccCCChhHHHHHHHHHHhcchhh------------------------------
Q 002235 159 YKLPQGEQLLVD------APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR------------------------------ 202 (949)
Q Consensus 159 ~~l~~~~~li~~------~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~------------------------------ 202 (949)
-. +++.-.. +.+.+-.+| ...|+.+++.|+.+|..+....
T Consensus 407 S~---~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~ 482 (810)
T 3now_A 407 TL---DAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVD 482 (810)
T ss_dssp TT---SHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHH
T ss_pred hC---CcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHH
Confidence 66 3332222 222333445 6788999999999999875410
Q ss_pred -------------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCchHHHHHHHH
Q 002235 203 -------------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAVIYECAG 264 (949)
Q Consensus 203 -------------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV~~Eaa~ 264 (949)
+++.|+.++ ...+|-.|......+..++. ++..+.. .++.|..+|++.++.++..|++
T Consensus 483 ~v~~r~~~VveaGaVp~LV~LL---~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 483 FINKRITVLANEGITTALCALA---KTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHH---TCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHH---cCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 233444444 35678889999999999985 4555444 3578889999999999999999
Q ss_pred HHHccC--CChHH------HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh----hHH-HHHHhheeccCCCCHH
Q 002235 265 TLVSLS--SAPTA------IRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD----IMV-DLIMDVLRALNSPNLD 331 (949)
Q Consensus 265 ~l~~l~--~~~~~------l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~----~l~-~~~~~il~~L~d~d~~ 331 (949)
+|.++. .+|.. ...++.+++.+|-++++...++-++..|..|+...+. ++. .....++.++.+++..
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~ 638 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY 638 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTT
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHH
Confidence 998873 33432 1235678888775443455678899999999865433 222 2455677788889999
Q ss_pred HHHHHHHHHHhhcCCCc-HHHHHH--HHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH------HHHHHHHH
Q 002235 332 IRRKTLDIVLELITPRN-INEVVL--MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS------TVVHLLMD 402 (949)
Q Consensus 332 Ir~~aL~lL~~l~~~~N-v~~Iv~--~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~------~~l~~L~~ 402 (949)
|++.|++++..++.... ...++. ...+.+....+ ..+.+.|+.+..+|..++...+.... ..++.|++
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~---s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE---DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 99999999999886432 222221 12233444444 35789999999999999875554333 35569999
Q ss_pred HHhCCCcccHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHhccc--chHHHHHHHh
Q 002235 403 FLGDSNVASAIDVIIFVREIIEMNPKLRVS-----IITRLLDNFYQI--RAARVCTCAL 454 (949)
Q Consensus 403 lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~-----~l~~L~~~l~~i--~~~~v~~~~l 454 (949)
+|..+...+...++..+.++....++.... ++..|++.+..- +.+++...++
T Consensus 716 LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al 774 (810)
T 3now_A 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774 (810)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence 999888888888999999998765654433 456666666432 2445544433
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.35 E-value=4.9e-11 Score=137.44 Aligned_cols=354 Identities=14% Similarity=0.140 Sum_probs=236.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhcCCCC----------
Q 002235 100 NLRNNLQHPNEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQH--RHPYIRRNAILAVMAIYKLPQG---------- 164 (949)
Q Consensus 100 sL~KDL~~~N~~iR~~ALr~L~~I~~---~el~~~l~~~I~~~L~d--~~pyVRk~A~lal~ki~~l~~~---------- 164 (949)
.+...+.+|+.-+|-.|-..|..+.. |+....+. +.+.+ .++.||..|+..+.++.+ ..
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~----~il~~~~~~~~vR~~a~~~Lk~~i~--~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELS----RVLANPGNSQVARVAAGLQIKNSLT--SKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHH----HHHHcCCCChHHHHHHHHHHHHhcc--ccchHHHHHHHh
Confidence 44556889999999999999988765 44444443 44434 478999999999999865 32
Q ss_pred ------cccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh--------hHHHHHHHHHhhcCcc--ChhHHHHHHHH
Q 002235 165 ------EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--------RAINYLLTHVDRVSEW--GELLQMVVLEL 228 (949)
Q Consensus 165 ------~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~--------~ai~~L~~~l~~i~~~--~p~~q~~il~l 228 (949)
++....+.+.+-..| .+.++.+ ..+..++..+... +.++.|...++ .. ++-.+...++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l-~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~---~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTL-GTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVT---NPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHT-TCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH---CTTCCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHh-CCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhc---cCCCCHHHHHHHHHH
Confidence 111111222222334 5566667 6666666665322 13455555544 33 56667778888
Q ss_pred HHHhhhcC-c----hhHHHHHHHHHHHHcCC--chHHHHHHHHHHHccCCC-h-----HHHHHHHHHHHHHHccCCchHH
Q 002235 229 IRKVCRTN-K----GEKGKYIKIIISLLNAP--STAVIYECAGTLVSLSSA-P-----TAIRAAANTYSQLLLSQSDNNV 295 (949)
Q Consensus 229 l~~~~~~~-p----~~~~~li~~L~~lL~s~--s~aV~~Eaa~~l~~l~~~-~-----~~l~~~a~~li~lll~~~d~nv 295 (949)
++.++... + .....+++.+..+|++. ++.|+.+|++++..+... . ...+......+.-+..++++.+
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 88877532 2 23456888889999988 789999999999875321 1 1111222222333457789999
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHH-h----heeccCCCCHHHHHHHHHHHHhhcCCC-----------------------
Q 002235 296 KLIVLDRLNELRSSHRDIMVDLIM-D----VLRALNSPNLDIRRKTLDIVLELITPR----------------------- 347 (949)
Q Consensus 296 r~iaL~~L~~l~~~~p~~l~~~~~-~----il~~L~d~d~~Ir~~aL~lL~~l~~~~----------------------- 347 (949)
|-.+++.|..+...+|..+.+|.. . ++.++.+.+..+|..+++.+..++...
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 313 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHH
Confidence 999999999999988876655544 3 344567889999999999888776431
Q ss_pred ----cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCccc-HHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 002235 348 ----NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV-ASTVVHLLMDFLGDSNVASAIDVIIFVREI 422 (949)
Q Consensus 348 ----Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~-~~~~l~~L~~lL~~~~~~v~~e~i~~l~~i 422 (949)
.+..++..|.+.+...-....+.+...|..+..+++.++..++.. .+.+++.+...|.+.+..+...++.++..+
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 124555555543322100011234578999999999999988843 356677777778777767777788888888
Q ss_pred HHhCc-c----cHHHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCC
Q 002235 423 IEMNP-K----LRVSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 423 i~~~p-~----~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~ 465 (949)
..... + .-..++..|+..+.| ..+.++..++|.+|.++....
T Consensus 394 ~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 394 LEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp SSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGG
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcc
Confidence 75322 1 124578888888877 468999999999999987654
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.34 E-value=1.4e-10 Score=137.07 Aligned_cols=354 Identities=13% Similarity=0.123 Sum_probs=246.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCc----hh----hHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHhcCCCCcc
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNE----TE----IIEPLIPSVLQNLQHRH-PYIRRNAILAVMAIYKLPQGEQ 166 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~----~e----l~~~l~~~I~~~L~d~~-pyVRk~A~lal~ki~~l~~~~~ 166 (949)
..+..|.+-|+++|+.+|-.|+++|+++.. +. +-..++|.+.++|.+.+ +.||..|+.++.++.. ..++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~~~ 151 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS--GTSE 151 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHH
Confidence 345667778889999999999999988722 11 12246788888998887 9999999999999988 5554
Q ss_pred ccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHHH
Q 002235 167 LLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIR 230 (949)
Q Consensus 167 li~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~ 230 (949)
... ...+.+-.+| .+.++.++.+|+.+|..+..+. +++.|..++. ...++-.+..++..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--EHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence 322 1334444545 7789999999999999986442 1333433332 3456778888999999
Q ss_pred HhhhcCchh----HHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChH-HHHH-----HHHHHHHHHccCCchHHHHHHH
Q 002235 231 KVCRTNKGE----KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPT-AIRA-----AANTYSQLLLSQSDNNVKLIVL 300 (949)
Q Consensus 231 ~~~~~~p~~----~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~-~l~~-----~a~~li~lll~~~d~nvr~iaL 300 (949)
.++...|.. ....++.|..+|.+.++.|+..|+.+|.++...+. ..+. ++..++.++ .++++.++..++
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~ 307 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPAL 307 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHH
Confidence 988764332 34578899999999999999999999999975432 2222 344566665 677899999999
Q ss_pred HHHHHHHhhChhhHH-----HHHHhheeccCCC-CHHHHHHHHHHHHhhcCC--CcHHHH-----HHHHHHHHHHhccCC
Q 002235 301 DRLNELRSSHRDIMV-----DLIMDVLRALNSP-NLDIRRKTLDIVLELITP--RNINEV-----VLMLKKEVVKTQSGE 367 (949)
Q Consensus 301 ~~L~~l~~~~p~~l~-----~~~~~il~~L~d~-d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~~L~kel~~~~~~~ 367 (949)
..|..|+...+...+ ..+..++.+|.++ +..+++.|+.+|..++.. ..+..+ +..|.+-+.
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~------ 381 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ------ 381 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH------
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh------
Confidence 999999875554322 1244566778888 999999999999998752 223222 233333222
Q ss_pred ccCCHHHHHHHHHHHHHhHcc-CcccHH-----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHH----------
Q 002235 368 LEKNGEYRQMLIQAIHSCAIK-FPEVAS-----TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRV---------- 431 (949)
Q Consensus 368 ~d~~~e~r~~lv~aI~~la~k-f~~~~~-----~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~---------- 431 (949)
+.+.+++..++.+|+.++.. -|.... .++..|+++|......+...++..|..+++..+....
T Consensus 382 -~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 460 (528)
T 4b8j_A 382 -TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFS 460 (528)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHH
T ss_pred -cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHH
Confidence 23679999999999999876 333222 4678899999998888888888999998875443111
Q ss_pred ------HHHHHHHHHhcccchHHHHHHHhhhcccCCCC
Q 002235 432 ------SIITRLLDNFYQIRAARVCTCALWIIGEYCQS 463 (949)
Q Consensus 432 ------~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~ 463 (949)
.++.+|..+. .-..++++..+.|++..|...
T Consensus 461 ~~i~~~~~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 461 QMIDEAEGLEKIENLQ-SHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence 1233333332 224577888899988877554
No 21
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.33 E-value=3e-09 Score=132.61 Aligned_cols=438 Identities=13% Similarity=0.083 Sum_probs=284.6
Q ss_pred cHHHHHHHh-cCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC--CCcchhHHHHHHHHHHhhcCC---C----
Q 002235 18 IANEIKEAL-EGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS--EDHTIQKLLLLYLEIIDKTDA---K---- 87 (949)
Q Consensus 18 ~~~eir~~L-~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s--~d~~lKrL~YL~l~~~~~~~~---d---- 87 (949)
.+.++-... .+++...|..|-+.|-.+... +.+.++..... ++.+ .+...|+++-++++..-+..- +
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~~~~~~~l~~-il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND--NFLQFAGLSSQ-VLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CHHHHHHHHHH-HHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHcccCcCHHHHHHHHHHHHHHHhh--CHHHHHHHHHH-HHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 445555556 788887777777766554332 23445555555 4343 467889998888877521100 0
Q ss_pred ---CC-CCch-HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchh----hHHHHHHHHHHhccCC-ChHHHHHHHHHHHH
Q 002235 88 ---GR-VLPE-MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETE----IIEPLIPSVLQNLQHR-HPYIRRNAILAVMA 157 (949)
Q Consensus 88 ---~~-l~~e-~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~e----l~~~l~~~I~~~L~d~-~pyVRk~A~lal~k 157 (949)
.. +-++ .--+-+.+..-|.++++.+|..+.++++.|...+ --+.+++.+.+++.+. ++.+|..|+.++..
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00 1122 2344577777889999999999988888875433 3457889999999998 99999999999999
Q ss_pred HhcCCCCccc---ccchHHH---HHHHHccCC--ChhHHHHHHHHHHhcc---hhh-----HHHHHHHHHhh-cCccChh
Q 002235 158 IYKLPQGEQL---LVDAPEM---IEKVLSTEQ--DPSAKRNAFLMLFTCD---QDR-----AINYLLTHVDR-VSEWGEL 220 (949)
Q Consensus 158 i~~l~~~~~l---i~~~~e~---l~~~L~~d~--d~~v~~~Al~~L~~i~---~~~-----ai~~L~~~l~~-i~~~~p~ 220 (949)
+... ..++. .+....+ +...+ .+. ++.|+..|+.+|..+. .+. ...++...+.+ +...++-
T Consensus 162 l~~~-~~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 162 MCES-ADPQSQALVSSSNNILIAIVQGA-QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp HHHT-SSTTSSTTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHc-CChhhhHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 9872 23331 2222333 33434 555 7889999999887642 111 12344444332 2334555
Q ss_pred HHHHHHHHHHHhhhcCchh----HH-HHHHHHHHHHcCCchHHHHHHHHHHHccCCCh----------------------
Q 002235 221 LQMVVLELIRKVCRTNKGE----KG-KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP---------------------- 273 (949)
Q Consensus 221 ~q~~il~ll~~~~~~~p~~----~~-~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~---------------------- 273 (949)
.+...++.+..++...|.. .. .+++.+...+.+.++.|+.+|+..+..+....
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 6667777777776544432 22 56677777788888999999998876653211
Q ss_pred HHHHHHHHHHHHHHcc------CCchHHHHHHHHHHHHHHhhChh-hHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 274 TAIRAAANTYSQLLLS------QSDNNVKLIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 274 ~~l~~~a~~li~lll~------~~d~nvr~iaL~~L~~l~~~~p~-~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
..+..+...++..+.. +.++++|..+.+.|..++...+. ++......+...+.++++.+|..++..+..++..
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 1122344445555532 23468999999999999876553 4444455566677899999999999999999865
Q ss_pred Cc---HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC------cccHHHHHHHHHHHHhCCCcccHHHHHH
Q 002235 347 RN---INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF------PEVASTVVHLLMDFLGDSNVASAIDVII 417 (949)
Q Consensus 347 ~N---v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf------~~~~~~~l~~L~~lL~~~~~~v~~e~i~ 417 (949)
.. +...+..+...+..... |.+..+|..+..+++.++... ++....+++.+++.|.+. ..+...+..
T Consensus 400 ~~~~~~~~~l~~il~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 400 PDKVQRTYYVHQALPSILNLMN---DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW 475 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 32 33444444445555544 567899999999999888653 234678899999999876 556666777
Q ss_pred HHHHHHHhCc--------ccHHHHHHHHHHHhcccc-hHHHHHHHhhhcccCCCCC
Q 002235 418 FVREIIEMNP--------KLRVSIITRLLDNFYQIR-AARVCTCALWIIGEYCQSL 464 (949)
Q Consensus 418 ~l~~ii~~~p--------~~~~~~l~~L~~~l~~i~-~~~v~~~~lwiLGEy~~~~ 464 (949)
.+..+++..+ ..-+.++..|+..+.+.. .+.++..+++.+|......
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 7777776432 123567888888886432 3578888888888665443
No 22
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.27 E-value=5.8e-10 Score=134.74 Aligned_cols=419 Identities=13% Similarity=0.100 Sum_probs=273.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHh---hcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH-H
Q 002235 20 NEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRY---VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM-I 95 (949)
Q Consensus 20 ~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~---l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~-i 95 (949)
-++-+.+.+++...|+-+- +|+....+.-+.+.+-+++. =+.++|...|-++.-++..+ .. +|+ -
T Consensus 77 ~~vvkl~~s~~~~~Krl~Y---L~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i--~~------~e~~~ 145 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGY---LFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV--GS------REMAE 145 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHH---HHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--CC------HHHHH
T ss_pred HHHHHHhcCCCHHHHHHHH---HHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc--CC------HHHHH
Confidence 4555688888876554322 22333344445554444432 24578887777776666665 22 565 3
Q ss_pred HHHHHHHhhc--CCCCHHHHHHHHHHhhcCC--chhhHH--HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc--
Q 002235 96 LICQNLRNNL--QHPNEYIRGVTLRFLCRLN--ETEIIE--PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL-- 167 (949)
Q Consensus 96 Lv~NsL~KDL--~~~N~~iR~~ALr~L~~I~--~~el~~--~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l-- 167 (949)
-+...+++-| .|++||||-.|+-++.++- .|++++ .+.+.+.++|.|++|.|+.+|+.++..+.. .+|+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~--~~~~~~~ 223 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ--KNPEEFK 223 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HCHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH--hChHHHH
Confidence 4668889999 9999999999988888774 588888 899999999999999999999999999988 67653
Q ss_pred --ccchHHHHHHHHcc-CC-----------ChhHHHHHHHHHHhcchh-h--HHHHH----HHHHhhcC-c--------c
Q 002235 168 --LVDAPEMIEKVLST-EQ-----------DPSAKRNAFLMLFTCDQD-R--AINYL----LTHVDRVS-E--------W 217 (949)
Q Consensus 168 --i~~~~e~l~~~L~~-d~-----------d~~v~~~Al~~L~~i~~~-~--ai~~L----~~~l~~i~-~--------~ 217 (949)
++...+.+.+++.. +. ||-.+...+.+|..+.+. + ....+ ..+++... . .
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 33334555565422 11 678888888888887652 2 22223 33332211 0 1
Q ss_pred --ChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHccCCc
Q 002235 218 --GELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA---PTAIRAAANTYSQLLLSQSD 292 (949)
Q Consensus 218 --~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~---~~~l~~~a~~li~lll~~~d 292 (949)
++-.....++.+..+. .++.......+.|..+|.++++.++|-|.+++..+... +..+......++..+..++|
T Consensus 304 n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d 382 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD 382 (621)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC
Confidence 1133344455555543 35566778889999999999999999999999888542 24444444445555533889
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhccCCccC
Q 002235 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINEVVLMLKKEVVKTQSGELEK 370 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~--~~Nv~~Iv~~L~kel~~~~~~~~d~ 370 (949)
+.+|..+|+.|..++. +.-+...+..+...+.+.|.++|..++.-+..++. +.+.+..++.|.+-+...
T Consensus 383 ~~Ir~~aL~lL~~l~~--~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~------- 453 (621)
T 2vgl_A 383 VSVRQRAVDLLYAMCD--RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA------- 453 (621)
T ss_dssp HHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-------
T ss_pred HhHHHHHHHHHHHHcC--hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh-------
Confidence 9999999999999864 33455555556666777899999998888877764 356677777777544321
Q ss_pred CHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcc--cHHHHHHHHHHHHHhCcc---cH-HHHHHHHHHHhccc
Q 002235 371 NGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVA--SAIDVIIFVREIIEMNPK---LR-VSIITRLLDNFYQI 444 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~--v~~e~i~~l~~ii~~~p~---~~-~~~l~~L~~~l~~i 444 (949)
+..+..+++..+..+..+.|......+..|.+.+.+.... +..-++..+.+.....++ .. ...+..+.+.+..
T Consensus 454 ~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~- 532 (621)
T 2vgl_A 454 GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHL- 532 (621)
T ss_dssp GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTT-
T ss_pred cccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhcc-
Confidence 2356777888888888889988888889999999875422 222223555554332221 11 1345555555443
Q ss_pred chHHHHHHHhhhcccCCC
Q 002235 445 RAARVCTCALWIIGEYCQ 462 (949)
Q Consensus 445 ~~~~v~~~~lwiLGEy~~ 462 (949)
+.+.++..++-.+..+..
T Consensus 533 ~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 533 CSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 234555555555555443
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.27 E-value=2.2e-08 Score=121.52 Aligned_cols=453 Identities=13% Similarity=0.090 Sum_probs=297.3
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC------CCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCC
Q 002235 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGET------LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGR 89 (949)
Q Consensus 16 ~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d------~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~ 89 (949)
..-+..+.+.|.+++...+..++.-|-.+...... ....+..+++.+..+++...++-+--.+..++..+ ++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~- 90 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EG- 90 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HH-
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hh-
Confidence 34577888899988888888888765555443321 12456777775544457888877766666664321 11
Q ss_pred CCchHH--HHHHHHHhhcCCCCHHHHHHHHHHhhcCCch------hhH-HHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 90 VLPEMI--LICQNLRNNLQHPNEYIRGVTLRFLCRLNET------EII-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 90 l~~e~i--Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~------el~-~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
+..+. =++..|.+=|+++++.+|-.|+.+|+++... .+. ...+|.+.+.|.+.++-++..|+.++..+..
T Consensus 91 -~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 91 -LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp -HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 11121 1456788888999999999999999998532 122 4578899999999999999999989988876
Q ss_pred CCCCccccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHHhhcCccChhHHHHH
Q 002235 161 LPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVV 225 (949)
Q Consensus 161 l~~~~~li~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~----------ai~~L~~~l~~i~~~~p~~q~~i 225 (949)
..++... ...+.+-.+|....+..++.+|+.+|..+.... +++.|..+ +...++-.+..+
T Consensus 170 --~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l---l~~~~~~~~~~a 244 (644)
T 2z6h_A 170 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH---LTDPSQRLVQNC 244 (644)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT---TTCSCHHHHHHH
T ss_pred --cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH---HhcCCHHHHHHH
Confidence 4443211 223444455644445567778888877765321 23333333 334467778888
Q ss_pred HHHHHHhhhcCch--hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH-HHH-----HHHHHHHHHccCCc-hHHH
Q 002235 226 LELIRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-IRA-----AANTYSQLLLSQSD-NNVK 296 (949)
Q Consensus 226 l~ll~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~-l~~-----~a~~li~lll~~~d-~nvr 296 (949)
+..+..+++..+. .....++.|..+|++.++.|+..|+.+|.++...+.. .+. .+..+++++...++ +.++
T Consensus 245 ~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 245 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 9999988875432 2357889999999999999999999999998654322 111 45667777765444 7999
Q ss_pred HHHHHHHHHHHhhChh-------hH-HHHHHhheeccCCCC-HHHHHHHHHHHHhhcCC----------CcHHHHHHHHH
Q 002235 297 LIVLDRLNELRSSHRD-------IM-VDLIMDVLRALNSPN-LDIRRKTLDIVLELITP----------RNINEVVLMLK 357 (949)
Q Consensus 297 ~iaL~~L~~l~~~~p~-------~l-~~~~~~il~~L~d~d-~~Ir~~aL~lL~~l~~~----------~Nv~~Iv~~L~ 357 (949)
..++..|..|...+|. ++ ...+..+..+|.+++ ..+++.++.+|.+++.. .-+..++..|.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999865552 11 123455677787764 79999999999998742 22333333332
Q ss_pred HHHHH-------------hccCCccCCHHHHHHHHHHHHHhHccCcccH-----HHHHHHHHHHHhCCCcccHHHHHHHH
Q 002235 358 KEVVK-------------TQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDSNVASAIDVIIFV 419 (949)
Q Consensus 358 kel~~-------------~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l 419 (949)
..-.. +.. ...+.+++..++.+++.++. .+... ...++.|+++|.+....+...+..++
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~--~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVE--GVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHTTC----------CC--SSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcc--cccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21000 000 01245788888999998874 22221 24578899999988877777788888
Q ss_pred HHHHHhCcccHHH-----HHHHHHHHhcccchHHHHHHHhhhcccCCCCCCcH-HH--HHHHHHHHhCCC
Q 002235 420 REIIEMNPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYCQSLSEV-EN--GIATIKQCLGEL 481 (949)
Q Consensus 420 ~~ii~~~p~~~~~-----~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~~-~~--~~~~i~~~l~~~ 481 (949)
..+.. .++.+.. ++..|.+.+.+ ..++++..++|+|+..+...+.. .+ .++.+...+...
T Consensus 482 ~~l~~-~~~~~~~i~~~g~l~~L~~ll~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 482 CELAQ-DKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHT-SHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHc-CHHHHHHHHHcCChhHHHHHHcC-CCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 88764 3444433 35677777765 56889999999999887766421 11 355666666544
No 24
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.26 E-value=2.7e-10 Score=123.10 Aligned_cols=252 Identities=12% Similarity=0.106 Sum_probs=163.8
Q ss_pred hHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC-chhhHHHHH
Q 002235 55 FITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-ETEIIEPLI 133 (949)
Q Consensus 55 f~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~-~~el~~~l~ 133 (949)
....++ .+.++|...|+.+.-.+..+. + ++ ++..|.+-|+|+++.+|..|+.+|+.+. .++.++.++
T Consensus 25 i~~L~~-~L~~~~~~vr~~A~~~L~~~~--~------~~---~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~ 92 (280)
T 1oyz_A 25 DDELFR-LLDDHNSLKRISSARVLQLRG--G------QD---AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVF 92 (280)
T ss_dssp HHHHHH-HTTCSSHHHHHHHHHHHHHHC--C------HH---HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHH
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHccC--C------ch---HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHH
Confidence 455566 457788888877666666552 1 22 4577888889999999999999999998 455666777
Q ss_pred HHHH-HhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHh
Q 002235 134 PSVL-QNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVD 212 (949)
Q Consensus 134 ~~I~-~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~ 212 (949)
+.+. .++.|+++.||..|+.++.++.. ..+...+...+.+..+| .|.|+.|+..|+.+|..+....++
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~--~~~~~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~~~~-------- 161 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVINDKATI-------- 161 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC---CCH--------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc--cCCcccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCHHHH--------
Confidence 7776 46789999999999999999986 44433344445555545 889999999999888776543222
Q ss_pred hcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCc
Q 002235 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSD 292 (949)
Q Consensus 213 ~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d 292 (949)
+.|..+|++.++.|+..|+.++..+..... .+...++.++ .+++
T Consensus 162 --------------------------------~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~~~L~~~l-~d~~ 205 (280)
T 1oyz_A 162 --------------------------------PLLINLLKDPNGDVRNWAAFAININKYDNS---DIRDCFVEML-QDKN 205 (280)
T ss_dssp --------------------------------HHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---HHHHHHHHHT-TCSC
T ss_pred --------------------------------HHHHHHHcCCCHHHHHHHHHHHHhhccCcH---HHHHHHHHHh-cCCC
Confidence 334445556666677777777666642211 1233344443 5666
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCH
Q 002235 293 NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNG 372 (949)
Q Consensus 293 ~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~ 372 (949)
+.+|..++..|..+. .+..+.. ++.++.|++ +|..++..|..++.+.-+..+. +.+.. ..+.
T Consensus 206 ~~vR~~A~~aL~~~~--~~~~~~~----L~~~l~d~~--vr~~a~~aL~~i~~~~~~~~L~----~~l~~------~~~~ 267 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRK--DKRVLSV----LCDELKKNT--VYDDIIEAAGELGDKTLLPVLD----TMLYK------FDDN 267 (280)
T ss_dssp HHHHHHHHHHHHHTT--CGGGHHH----HHHHHTSSS--CCHHHHHHHHHHCCGGGHHHHH----HHHTT------SSCC
T ss_pred HHHHHHHHHHHHHhC--CHhhHHH----HHHHhcCcc--HHHHHHHHHHhcCchhhhHHHH----HHHhc------CCCc
Confidence 777777777776664 3443333 344555554 7788888888887765444333 22221 2356
Q ss_pred HHHHHHHHHHH
Q 002235 373 EYRQMLIQAIH 383 (949)
Q Consensus 373 e~r~~lv~aI~ 383 (949)
+++..++++++
T Consensus 268 ~~~~~~~~~l~ 278 (280)
T 1oyz_A 268 EIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 77777777765
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.26 E-value=9.9e-10 Score=130.01 Aligned_cols=319 Identities=12% Similarity=0.104 Sum_probs=228.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCC--cc---cc-cchHHHHHHHHccCC-ChhHHHHHHHHHHhcchhh--
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG--EQ---LL-VDAPEMIEKVLSTEQ-DPSAKRNAFLMLFTCDQDR-- 202 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~--~~---li-~~~~e~l~~~L~~d~-d~~v~~~Al~~L~~i~~~~-- 202 (949)
.++.+.+.|.+.++.+|..|+.++.++.. .. +. ++ ....+.+-.+| .+. ++.++..|+.+|..+....
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~--~~~~~~~~~~~~~g~i~~Lv~~L-~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILS--REHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTC--CSSSCSHHHHHHTTCHHHHHHTT-STTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CCCCccHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 36677788899999999999999999976 32 21 11 12334444555 554 8999999999999886521
Q ss_pred ---------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCchHHHHHHHHHHHc
Q 002235 203 ---------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAVIYECAGTLVS 268 (949)
Q Consensus 203 ---------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV~~Eaa~~l~~ 268 (949)
+++.|..++. ..++..+...+..|..++..++..+.. .++.|..+|++.++.|+..|+.+|.+
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3556666665 357888999999999998776654433 56888899999889999999999998
Q ss_pred cCCC----h--HHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH-----HHHHhheeccCCCCHHHHHHHH
Q 002235 269 LSSA----P--TAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTL 337 (949)
Q Consensus 269 l~~~----~--~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL 337 (949)
+... . .....+...+++++ .++|+.++..++..|..|+...+...+ ..+..++.++.+++..++..++
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHH
Confidence 8532 1 12223455566655 678899999999999999876554332 3345577788899999999999
Q ss_pred HHHHhhcCCC--cHHHHHH-HHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH-----HHHHHHHHHHHhCCCc
Q 002235 338 DIVLELITPR--NINEVVL-MLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDSNV 409 (949)
Q Consensus 338 ~lL~~l~~~~--Nv~~Iv~-~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~-----~~~l~~L~~lL~~~~~ 409 (949)
.+|..++... ....++. .+...+..... +.+..+|..++.+|+.++...+... ..+++.|+++|.+...
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLS---SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 9999998643 2222211 11122333333 3468999999999999986544332 2456789999988877
Q ss_pred ccHHHHHHHHHHHHHhC-c--ccHH-----HHHHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 410 ASAIDVIIFVREIIEMN-P--KLRV-----SIITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 410 ~v~~e~i~~l~~ii~~~-p--~~~~-----~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
.+...++.+|..+.... | +... .++..|+..+.+ ..++++..++|.|+.+.
T Consensus 398 ~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 398 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 88888999999998753 3 3322 367788888876 46889999999998653
No 26
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=1.3e-09 Score=141.96 Aligned_cols=433 Identities=13% Similarity=0.162 Sum_probs=281.1
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCC-C-----CCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCC
Q 002235 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLNGE-T-----LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (949)
Q Consensus 17 ~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~-d-----~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l 90 (949)
..+..+-+.+.+++...|..++..+.-...... . ...+...+++ .+.+++...|+.+...+..+.+.-++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~-~L~d~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILK-LLEDKNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHTTSCH---
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhCCH---
Confidence 467788888999999999988888776543321 1 1256667777 45788999999999998887643321
Q ss_pred CchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC---ch---------hhHHHHHHHHHHhcc-CCChHHHHHHHHHHHH
Q 002235 91 LPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ET---------EIIEPLIPSVLQNLQ-HRHPYIRRNAILAVMA 157 (949)
Q Consensus 91 ~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~---~~---------el~~~l~~~I~~~L~-d~~pyVRk~A~lal~k 157 (949)
+.+--+...+.+-+.++++.+|..|.++|+.+. .+ ...+.++|.+.+++. +.++.+|..|+.++..
T Consensus 82 -~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 82 -YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 233456688888899999999999999888774 22 257889999999998 5899999999999999
Q ss_pred HhcCCCCcccccchHHHHHHHH--ccCCChhHHHHHHHHHHhcchhh-------HHHHHHHHHhhcCccChhHHHHHHHH
Q 002235 158 IYKLPQGEQLLVDAPEMIEKVL--STEQDPSAKRNAFLMLFTCDQDR-------AINYLLTHVDRVSEWGELLQMVVLEL 228 (949)
Q Consensus 158 i~~l~~~~~li~~~~e~l~~~L--~~d~d~~v~~~Al~~L~~i~~~~-------ai~~L~~~l~~i~~~~p~~q~~il~l 228 (949)
+... ..+.+.+...+++..++ ..+.++.|+..|+.+|..+.... .++.|...+..-.. +-.....++.
T Consensus 161 ~~~~-~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~--~~~r~~a~~~ 237 (1230)
T 1u6g_C 161 MLSR-QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS--MSTTRTYIQC 237 (1230)
T ss_dssp HHHH-TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS--SCSCTTHHHH
T ss_pred HHHH-hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc--hhHHHHHHHH
Confidence 8862 23334443444444432 36788899999998888765321 24555555443211 1112223444
Q ss_pred HHHhhhcCch----hHHHHHHHHHHHHcCCchHHHHHHHHHHHccC---CC--hHHHHHHHHHHHHHHcc----------
Q 002235 229 IRKVCRTNKG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLS---SA--PTAIRAAANTYSQLLLS---------- 289 (949)
Q Consensus 229 l~~~~~~~p~----~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~---~~--~~~l~~~a~~li~lll~---------- 289 (949)
+..++..-|. ....+++.+...++..++.|+-.|..++..+. +. ...+..+...+++.+..
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccc
Confidence 4444332221 23467888888888888877776666655442 11 12333333333332211
Q ss_pred --------------------------CCchHHHHHHHHHHHHHHhhChhhHHHHHHh----heeccCCCCHHHHHHHHHH
Q 002235 290 --------------------------QSDNNVKLIVLDRLNELRSSHRDIMVDLIMD----VLRALNSPNLDIRRKTLDI 339 (949)
Q Consensus 290 --------------------------~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~----il~~L~d~d~~Ir~~aL~l 339 (949)
+..+.+|..++..|..++...|..+.++... +...+.|.+..+|..++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHA 397 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 1124679999999999998777655554433 4455688899999999988
Q ss_pred HHhhcCC---------------------CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc----ccHH
Q 002235 340 VLELITP---------------------RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP----EVAS 394 (949)
Q Consensus 340 L~~l~~~---------------------~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~----~~~~ 394 (949)
+..++.. ..+..+++.+...+.+... +.+...|..++.+++.++...+ +..+
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~---~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK---EKSVKTRQCCFNMLTELVNVLPGALTQHIP 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHSTTTTGGGHH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHchhhhHHHHH
Confidence 7765531 1223344444433333343 4577899999999999887654 3457
Q ss_pred HHHHHHHHHHhCCCc--ccHHHHHHHHHHHHHhC-cc-c---HHHHHHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 395 TVVHLLMDFLGDSNV--ASAIDVIIFVREIIEMN-PK-L---RVSIITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 395 ~~l~~L~~lL~~~~~--~v~~e~i~~l~~ii~~~-p~-~---~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
.+++.+++.|.+... .+..+++..+..++... |+ . -..++..|...+.+ +...++..+++.+|+..
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d-~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-PFYKITSEALLVTQQLV 547 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHH
Confidence 888999999998764 56667777888777633 44 1 22456667776766 44566666666666543
No 27
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.23 E-value=3.5e-08 Score=122.94 Aligned_cols=425 Identities=11% Similarity=0.092 Sum_probs=261.9
Q ss_pred HhcCCChHHHH---HHHHHHHHHHhCCCCCCchhHHHHHhhcCCC-CcchhHHHHHHHHHHhh-cCCCCC-CCchHHHHH
Q 002235 25 ALEGNDVPAKV---DAMKKAIMLLLNGETLPQLFITIVRYVLPSE-DHTIQKLLLLYLEIIDK-TDAKGR-VLPEMILIC 98 (949)
Q Consensus 25 ~L~s~~~~~k~---~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~-d~~lKrL~YL~l~~~~~-~~~d~~-l~~e~iLv~ 98 (949)
.+.+++..-+. .++..+.....-+...+.++..++. ++.++ |...|..+...+..+.+ ..++.. +.+.+--+.
T Consensus 103 ~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~-~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 103 ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVD-NTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHH-HTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 34555543322 4444444443322345678888888 55676 88888777666666543 222110 112333445
Q ss_pred HHHHhhcCCC--CHHHHHHHHHHhhcCC---chhh-----HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 99 QNLRNNLQHP--NEYIRGVTLRFLCRLN---ETEI-----IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 99 NsL~KDL~~~--N~~iR~~ALr~L~~I~---~~el-----~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
..+.+-+.++ ++.+|..|+++++.+. ...+ .+.+.+.+.+.+.+.++-||+.|+.++..+.. ..++.+
T Consensus 182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~--~~~~~~ 259 (861)
T 2bpt_A 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS--KYYTFM 259 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--HHGGGC
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--HHHHHH
Confidence 6667777777 8999999999998742 1111 24577888888999999999999999999988 555443
Q ss_pred c-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh--------------------H---HHHHH-HHHhhcCc---
Q 002235 169 V-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR--------------------A---INYLL-THVDRVSE--- 216 (949)
Q Consensus 169 ~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~--------------------a---i~~L~-~~l~~i~~--- 216 (949)
. .+.+.+...+ .|.|+.|+..|+..+..+.... . +..+. .++..+..
T Consensus 260 ~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~ 338 (861)
T 2bpt_A 260 KPYMEQALYALTIATM-KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE 338 (861)
T ss_dssp HHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 3333333434 7888999999998887764331 0 11111 12222221
Q ss_pred ---cChh-HHHHHHHHHHHhhhcC-chhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC--hHHH----HHHHHHHHH
Q 002235 217 ---WGEL-LQMVVLELIRKVCRTN-KGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTAI----RAAANTYSQ 285 (949)
Q Consensus 217 ---~~p~-~q~~il~ll~~~~~~~-p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~~l----~~~a~~li~ 285 (949)
-+.| ......+.+..++... ......+++.+...+++.+..++..|+.++..+... +..+ ..+...++.
T Consensus 339 d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~ 418 (861)
T 2bpt_A 339 DPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418 (861)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1234 3445556666555432 234567888899999999999999999999988643 2333 233334444
Q ss_pred HHccCCchHHHHHHHHHHHHHHhhC------hhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC----------CcH
Q 002235 286 LLLSQSDNNVKLIVLDRLNELRSSH------RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP----------RNI 349 (949)
Q Consensus 286 lll~~~d~nvr~iaL~~L~~l~~~~------p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~----------~Nv 349 (949)
.+ .++++.+|..++..|..+.... +..+......++.++.|+ ..+|..+...+..++.. .-+
T Consensus 419 ~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 419 LM-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp GG-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred Hc-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 43 6788999999999998887642 334566666677788875 88998888777665431 234
Q ss_pred HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH----HHHHHHHHHHHhCC---------------Ccc
Q 002235 350 NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA----STVVHLLMDFLGDS---------------NVA 410 (949)
Q Consensus 350 ~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~----~~~l~~L~~lL~~~---------------~~~ 410 (949)
..+++.|.+-+... +.+..+|..++++++.++...+... ..++..+++.|... ...
T Consensus 497 ~~il~~L~~~l~~~-----d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 571 (861)
T 2bpt_A 497 PALVDGLIGAANRI-----DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571 (861)
T ss_dssp HHHHHHHHHHHTCS-----CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-----CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence 56666555433211 3346899999999999998776543 34444555555431 112
Q ss_pred cHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHhcccchHHHHHHHhhhcccC
Q 002235 411 SAIDVIIFVREIIEMNPK----LRVSIITRLLDNFYQIRAARVCTCALWIIGEY 460 (949)
Q Consensus 411 v~~e~i~~l~~ii~~~p~----~~~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy 460 (949)
+...++..+..+++..+. .-+.++..+...+.+.....++..+++.+|..
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l 625 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISAL 625 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHH
Confidence 333456777777765543 23456667777776532215566666665543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.20 E-value=3e-08 Score=117.00 Aligned_cols=317 Identities=14% Similarity=0.152 Sum_probs=229.0
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCC-CC------CchhHHHHHhhcCCCC-cchhHHHHHHHHHHhhcCCCCC
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGE-TL------PQLFITIVRYVLPSED-HTIQKLLLLYLEIIDKTDAKGR 89 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~-d~------s~lf~~Vik~l~~s~d-~~lKrL~YL~l~~~~~~~~d~~ 89 (949)
++..+-+.|.+++...+..+++.+-.+...+. +. ..+++..++++ .+++ ..++..+.-++..++..+++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~~- 152 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWALTNIASGTSEN- 152 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHHHHHHTSCHHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHhCCCHHH-
Confidence 56788889999988888888877766655443 21 25677778844 6665 788888877777775432210
Q ss_pred CCchHHH---HHHHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhHH-----HHHHHHHHhc-cCCChHHHHHHHHHHHHH
Q 002235 90 VLPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEIIE-----PLIPSVLQNL-QHRHPYIRRNAILAVMAI 158 (949)
Q Consensus 90 l~~e~iL---v~NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~~-----~l~~~I~~~L-~d~~pyVRk~A~lal~ki 158 (949)
...++ ++..|.+-|.++++.+|..|+.+|++|.. ++... ..++.+.+.+ .+.++.||+.|+.++..+
T Consensus 153 --~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 153 --TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp --HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred --HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 01122 56788889999999999999999999853 22111 2467788888 788999999999999999
Q ss_pred hcCCCCccc----ccchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccChhHHH
Q 002235 159 YKLPQGEQL----LVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQM 223 (949)
Q Consensus 159 ~~l~~~~~l----i~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~ 223 (949)
.. ..|.. +....+.+-.+| .+.|+.++..|+.+|..+.... .++.|..++ ...++..+.
T Consensus 231 ~~--~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL---~~~~~~v~~ 304 (528)
T 4b8j_A 231 CR--GKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---LHPSPSVLI 304 (528)
T ss_dssp HC--SSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT---TCSCHHHHH
T ss_pred Hc--CCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH---cCCChhHHH
Confidence 88 44322 223445555655 7889999999999999886432 133444443 455788899
Q ss_pred HHHHHHHHhhhcCchhHH-----HHHHHHHHHHcCC-chHHHHHHHHHHHccCC-ChHHHHH-----HHHHHHHHHccCC
Q 002235 224 VVLELIRKVCRTNKGEKG-----KYIKIIISLLNAP-STAVIYECAGTLVSLSS-APTAIRA-----AANTYSQLLLSQS 291 (949)
Q Consensus 224 ~il~ll~~~~~~~p~~~~-----~li~~L~~lL~s~-s~aV~~Eaa~~l~~l~~-~~~~l~~-----~a~~li~lll~~~ 291 (949)
..++.++.++..++.... .+++.|..+|++. ++.|+.+|+.+|.++.. .+..+.. +...++.++ .++
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL-~~~ 383 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL-QTA 383 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH-HHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH-hcC
Confidence 999999999887665443 3468899999998 89999999999999964 3333332 234566666 556
Q ss_pred chHHHHHHHHHHHHHHhh-ChhhHH-----HHHHhheeccCCCCHHHHHHHHHHHHhhcC
Q 002235 292 DNNVKLIVLDRLNELRSS-HRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 292 d~nvr~iaL~~L~~l~~~-~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
++.+|..++..|..++.. .|.... ..+..++.+|.++|..++..++..|..++.
T Consensus 384 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 384 EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999876 444322 245557788899999999999999988753
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.18 E-value=2.1e-08 Score=124.46 Aligned_cols=449 Identities=14% Similarity=0.107 Sum_probs=283.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCC------CCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCc
Q 002235 19 ANEIKEALEGNDVPAKVDAMKKAIMLLLNGET------LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLP 92 (949)
Q Consensus 19 ~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d------~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~ 92 (949)
+..+.+.|.+++...|..+++-|-.+...... .......+++.+-.++|...|+-+--.+..++... ++ +.
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~--~~ 228 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EG--LL 228 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HH--HH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hh--HH
Confidence 34566677777777777777555544332211 22456666764433458888887777666664321 11 11
Q ss_pred hHH--HHHHHHHhhcCCCCHHHHHHHHHHhhcCCch--h----h-HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCC
Q 002235 93 EMI--LICQNLRNNLQHPNEYIRGVTLRFLCRLNET--E----I-IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ 163 (949)
Q Consensus 93 e~i--Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~--e----l-~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~ 163 (949)
.+. =++..|.+=|+++++.+|..|+.+|++|... + + -...++.+.+++.+.++.||..|+.++..+.. .
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~ 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--C
Confidence 221 1456777888999999999999999998532 1 1 13567888999999999999999888887665 3
Q ss_pred Ccccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh----------HHHHHHHHHhhcCccChhHHHHHHHH
Q 002235 164 GEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR----------AINYLLTHVDRVSEWGELLQMVVLEL 228 (949)
Q Consensus 164 ~~~li-----~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~----------ai~~L~~~l~~i~~~~p~~q~~il~l 228 (949)
+++.. ....+.+-.+|....+.....+|..+|..+.... +++.|. .-+...++-.+...+..
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll---~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG---LHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHG---GGTTCSCHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHH---HHHcCCchHHHHHHHHH
Confidence 43321 1233444455633333344445556655543211 123333 33344566678888888
Q ss_pred HHHhhhcCch--hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHH------HHHHHHHHHHccCCch-HHHHHH
Q 002235 229 IRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIR------AAANTYSQLLLSQSDN-NVKLIV 299 (949)
Q Consensus 229 l~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~------~~a~~li~lll~~~d~-nvr~ia 299 (949)
+..++...+. ....+++.|..+|.+.++.|+..|+.+|.++...+...+ ..+..+++++...+++ .++..+
T Consensus 384 L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~A 463 (780)
T 2z6g_A 384 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463 (780)
T ss_dssp HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHH
Confidence 8888765432 245688999999999999999999999999976532221 1456777877654444 899999
Q ss_pred HHHHHHHHhhChhh------H--HHHHHhheeccCCCCH-HHHHHHHHHHHhhcCC----------CcHHHHHHHHHHH-
Q 002235 300 LDRLNELRSSHRDI------M--VDLIMDVLRALNSPNL-DIRRKTLDIVLELITP----------RNINEVVLMLKKE- 359 (949)
Q Consensus 300 L~~L~~l~~~~p~~------l--~~~~~~il~~L~d~d~-~Ir~~aL~lL~~l~~~----------~Nv~~Iv~~L~ke- 359 (949)
+..|..|...++.. + ...+..++.+|.+++. .|++.+..+|..++.. .-+..++..|...
T Consensus 464 l~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~ 543 (780)
T 2z6g_A 464 ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 543 (780)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 99999997655431 1 1234556677877664 9999999999998742 2233333333211
Q ss_pred --HHH----------hccCCccCCHHHHHHHHHHHHHhHccCcccH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 002235 360 --VVK----------TQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREI 422 (949)
Q Consensus 360 --l~~----------~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~i 422 (949)
.++ +.+. ....+++..++.+|+.++. .+... ..++..|+++|.+....+...+..++..+
T Consensus 544 ~~~~~~aa~al~nq~~~~~--~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L 620 (780)
T 2z6g_A 544 QDTQRRTSMGGTQQQFVEG--VRMEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620 (780)
T ss_dssp HHHHHTTC------CCSTT--CCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhccccchhhcc--cChHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 000 1100 1235688889999998873 23221 23478899999998888888888888887
Q ss_pred HHhCcccHHH-----HHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc-HHH--HHHHHHHHhCC
Q 002235 423 IEMNPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE-VEN--GIATIKQCLGE 480 (949)
Q Consensus 423 i~~~p~~~~~-----~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~-~~~--~~~~i~~~l~~ 480 (949)
.. .++.+.. ++..|.+.+.+ ..++++..++|.|+..+...+. ... ..+.+...+.+
T Consensus 621 ~~-~~~~~~~i~~~g~i~~L~~Ll~~-~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~ 684 (780)
T 2z6g_A 621 AQ-DKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT 684 (780)
T ss_dssp HT-SHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC---
T ss_pred hc-CHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhC
Confidence 63 3444433 46677777765 5678999999999988765542 222 34455555543
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.17 E-value=1.1e-08 Score=120.82 Aligned_cols=352 Identities=14% Similarity=0.162 Sum_probs=229.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcC----Cch---hhHH-HHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRL----NET---EIIE-PLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I----~~~---el~~-~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
+.-+.+.++|.|+-.+-.|.+.+-++ ..| ++++ .++|.+.++|.+ .+|.|+..|+-|+..|.. ..++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQT 136 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHHHH
Confidence 44556667777766665555443332 333 2232 267888899964 579999999999999987 555432
Q ss_pred cc-----hHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhc--CccChhHHHHHHHHHH
Q 002235 169 VD-----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRV--SEWGELLQMVVLELIR 230 (949)
Q Consensus 169 ~~-----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i--~~~~p~~q~~il~ll~ 230 (949)
.. ..+.+-.+| .++++.++..|+.+|..+..+. ++..|..++..- .......+..+...+.
T Consensus 137 ~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 21 234444545 7889999999999999986432 244555555421 1222334555666677
Q ss_pred HhhhcC-c----hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH-HHH-----HHHHHHHHHccCCchHHHHHH
Q 002235 231 KVCRTN-K----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-IRA-----AANTYSQLLLSQSDNNVKLIV 299 (949)
Q Consensus 231 ~~~~~~-p----~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~-l~~-----~a~~li~lll~~~d~nvr~ia 299 (949)
.+++.. + .....+++.|..+|++.++.|+..|+.++.++...+.. .+. +...+++++ .++++.++..+
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a 294 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPA 294 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHH
Confidence 776642 1 12356889999999999999999999999999765332 222 234566665 67889999999
Q ss_pred HHHHHHHHhhChhhH----H-HHHHhheeccCCCCHHHHHHHHHHHHhhcCC--CcHHH-----HHHHHHHHHHHhccCC
Q 002235 300 LDRLNELRSSHRDIM----V-DLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNINE-----VVLMLKKEVVKTQSGE 367 (949)
Q Consensus 300 L~~L~~l~~~~p~~l----~-~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~~L~kel~~~~~~~ 367 (949)
++.|..+....+..- . .....+..+|.+++..||+.|.-+|..++.. .+... ++..|...+ .
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL----~-- 368 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL----S-- 368 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH----H--
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH----c--
Confidence 999999876544321 1 2344577789999999999999999998742 33332 233333222 2
Q ss_pred ccCCHHHHHHHHHHHHHhHccCcccH------HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccH--HH-------
Q 002235 368 LEKNGEYRQMLIQAIHSCAIKFPEVA------STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLR--VS------- 432 (949)
Q Consensus 368 ~d~~~e~r~~lv~aI~~la~kf~~~~------~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~--~~------- 432 (949)
+.+.+.|+.++.+|+.++..-.... ..+++.|+++|......+...++..|..|++..+... +.
T Consensus 369 -~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee 447 (510)
T 3ul1_B 369 -KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE 447 (510)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH
Confidence 3468999999999999886433221 2457889999998888888888888888886433221 11
Q ss_pred --HHHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 433 --IITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 433 --~l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
++.+| +.|..-+..+++..+..+|-.|-
T Consensus 448 ~ggl~~i-e~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 448 CGGLDKI-EALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp TTHHHHH-HHGGGCSSHHHHHHHHHHHHHHC
T ss_pred cCcHHHH-HHHHcCCCHHHHHHHHHHHHHHC
Confidence 12222 22233345677777777776653
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.17 E-value=8.5e-09 Score=121.16 Aligned_cols=348 Identities=12% Similarity=0.132 Sum_probs=230.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchh-----hH--HHHHHHHHHhccC-CChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETE-----II--EPLIPSVLQNLQH-RHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~e-----l~--~~l~~~I~~~L~d-~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
++..|.+-|+++++.+|-.|+.+|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++.++.. . ++..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~--~-~~~~ 94 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--H-REGL 94 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--S-HHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--C-chhH
Confidence 4577777788999999999999999885421 12 2466777777754 589999999999999866 2 3222
Q ss_pred cc-----hHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHHHHh
Q 002235 169 VD-----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKV 232 (949)
Q Consensus 169 ~~-----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~ 232 (949)
.. ..+.+-.+| .+.|+.++..|+.+|..+..+. +++.|.++++ ..++-.+......+..+
T Consensus 95 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 95 LAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHH
Confidence 11 233444545 7888999999999999885431 2444554443 34555667777788877
Q ss_pred hhcCchhHHH-----HHHHHHHHHcCCchH-HHHHHHHHHHccCCChHHHH-----HHHHHHHHHHccCCchHHHHHHHH
Q 002235 233 CRTNKGEKGK-----YIKIIISLLNAPSTA-VIYECAGTLVSLSSAPTAIR-----AAANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 233 ~~~~p~~~~~-----li~~L~~lL~s~s~a-V~~Eaa~~l~~l~~~~~~l~-----~~a~~li~lll~~~d~nvr~iaL~ 301 (949)
+..++..+.. .++.+..+|++.++. +...++.++.++...+.... .+...++.++ .++++.++..++.
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHH
Confidence 7666554433 346677777766554 66667888888865442211 1334555554 5678899999999
Q ss_pred HHHHHHhhChh--hHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCC--cHHHH-----HHHHHHHHHHhccCCccCCH
Q 002235 302 RLNELRSSHRD--IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR--NINEV-----VLMLKKEVVKTQSGELEKNG 372 (949)
Q Consensus 302 ~L~~l~~~~p~--~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~--Nv~~I-----v~~L~kel~~~~~~~~d~~~ 372 (949)
.|..+....+. ........++.++.++|..++..+..+|..++... +...+ ++.|.+-+... +.+.
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-----~~~~ 324 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-----GDRE 324 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-----TTCH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc-----CCHH
Confidence 99999875432 23456666778889999999999999999998743 33222 23333333221 1246
Q ss_pred HHHHHHHHHHHHhHccCcccH--------HHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHhCcccHH-----HHHHHHH
Q 002235 373 EYRQMLIQAIHSCAIKFPEVA--------STVVHLLMDFLGDSNV-ASAIDVIIFVREIIEMNPKLRV-----SIITRLL 438 (949)
Q Consensus 373 e~r~~lv~aI~~la~kf~~~~--------~~~l~~L~~lL~~~~~-~v~~e~i~~l~~ii~~~p~~~~-----~~l~~L~ 438 (949)
+.+..++.+++.++...|... ...++.|+++|.+... .+..+++..+.++.. .|+.+. .++..|+
T Consensus 325 ~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~i~~L~ 403 (529)
T 1jdh_A 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLV 403 (529)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHcCCHHHHH
Confidence 899999999999987655421 1347888999988764 677888889998875 343333 3577888
Q ss_pred HHhcccchHHHHHHHhhhccc
Q 002235 439 DNFYQIRAARVCTCALWIIGE 459 (949)
Q Consensus 439 ~~l~~i~~~~v~~~~lwiLGE 459 (949)
+.+.+ .+++++..++|.++.
T Consensus 404 ~ll~~-~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 404 QLLVR-AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHH-HHHHHC---------
T ss_pred HHHHH-HhHHHHHHHhcccCc
Confidence 88876 567899999999986
No 32
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.16 E-value=1.8e-08 Score=125.83 Aligned_cols=435 Identities=11% Similarity=0.109 Sum_probs=268.7
Q ss_pred HHHHhcCC--ChHHHHHHHHHHHHHHh-CCCCCC-----chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch
Q 002235 22 IKEALEGN--DVPAKVDAMKKAIMLLL-NGETLP-----QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE 93 (949)
Q Consensus 22 ir~~L~s~--~~~~k~~aL~kli~l~~-~G~d~s-----~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e 93 (949)
+.+.+.++ +...|..+++-+-.+.. .|..+. ..++.++..+..+.+..+|+.++-.+..+....++ .+.+.
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~ 255 (876)
T 1qgr_A 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMETY 255 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG-GCHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH-HHHHH
Confidence 55566665 45555566654433322 121111 12344444355677888888887777776554332 11122
Q ss_pred HH-HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchh---------------------------hHHHHHHHHHHhcc----
Q 002235 94 MI-LICQNLRNNLQHPNEYIRGVTLRFLCRLNETE---------------------------IIEPLIPSVLQNLQ---- 141 (949)
Q Consensus 94 ~i-Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~e---------------------------l~~~l~~~I~~~L~---- 141 (949)
+. -+...+.+-++++++.+|..|+.+++.+.... .++.++|.+.+.+.
T Consensus 256 ~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~ 335 (876)
T 1qgr_A 256 MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE 335 (876)
T ss_dssp HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc
Confidence 22 34566666778899999999998887775321 23566677777764
Q ss_pred ---CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh---hHH-HHHH----HH
Q 002235 142 ---HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---RAI-NYLL----TH 210 (949)
Q Consensus 142 ---d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~---~ai-~~L~----~~ 210 (949)
|.+..||+.|+.++..+... ..+..++.+.+.+...| .+.++.++..|+.+|..+... +.+ .++. .+
T Consensus 336 d~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l 413 (876)
T 1qgr_A 336 NDDDDDWNPCKAAGVCLMLLATC-CEDDIVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (876)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHH-CcHhhHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45789999999999998872 22344444455565655 788999999999999887532 111 2222 22
Q ss_pred HhhcCccChhHHHHHHHHHHHhhhcCc------hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC------------
Q 002235 211 VDRVSEWGELLQMVVLELIRKVCRTNK------GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA------------ 272 (949)
Q Consensus 211 l~~i~~~~p~~q~~il~ll~~~~~~~p------~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~------------ 272 (949)
+..+...++..+...+..+.+++...+ .....+++.+...|.+. +.|+..|++++..+...
T Consensus 414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~ 492 (876)
T 1qgr_A 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQE 492 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 333456678888888888888876532 34567778888888774 78998888888765311
Q ss_pred -------hHHHHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHhhChhhHHHHHHh----heecc-----------CCC
Q 002235 273 -------PTAIRAAANTYSQLLLSQ--SDNNVKLIVLDRLNELRSSHRDIMVDLIMD----VLRAL-----------NSP 328 (949)
Q Consensus 273 -------~~~l~~~a~~li~lll~~--~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~----il~~L-----------~d~ 328 (949)
...+..+...+++.+... .+.++|..+++.+..++...+.-+.++... ++..+ +++
T Consensus 493 ~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 572 (876)
T 1qgr_A 493 EPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572 (876)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTT
T ss_pred cccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 123445566666666432 146899999999999987654322222222 22111 344
Q ss_pred C----HHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHHhccCCccC-CHHHHHHHHHHHHHhHc----cCcccHHHH
Q 002235 329 N----LDIRRKTLDIVLELITPRN---INEVVLMLKKEVVKTQSGELEK-NGEYRQMLIQAIHSCAI----KFPEVASTV 396 (949)
Q Consensus 329 d----~~Ir~~aL~lL~~l~~~~N---v~~Iv~~L~kel~~~~~~~~d~-~~e~r~~lv~aI~~la~----kf~~~~~~~ 396 (949)
| ..++..++..+..++..-. +...+..++..+...... .. ...++..++.+|+.++. .|.+..+.+
T Consensus 573 d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQS--TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHh--ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4 4567777777777665433 222223333333333221 11 13678889999988775 355556778
Q ss_pred HHHHHHHHhCC-CcccHHHHHHHHHHHHHhCc-ccH---HHHHHHHHHHhccc-chHHHHHHHhhhcccCCC
Q 002235 397 VHLLMDFLGDS-NVASAIDVIIFVREIIEMNP-KLR---VSIITRLLDNFYQI-RAARVCTCALWIIGEYCQ 462 (949)
Q Consensus 397 l~~L~~lL~~~-~~~v~~e~i~~l~~ii~~~p-~~~---~~~l~~L~~~l~~i-~~~~v~~~~lwiLGEy~~ 462 (949)
++.+...|.+. ...+...++..+..+++..+ ..+ ..++..|++.+.+- ...+++..++|.+|..+.
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 88999999886 56677778888888876543 222 45666777777542 235688899999987643
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.16 E-value=1.2e-09 Score=112.82 Aligned_cols=185 Identities=17% Similarity=0.234 Sum_probs=130.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
.+..|.+.|+|+++.+|..|++.|+.+..++.++ .+.+.+.|+++.||..|+.++.++.. + ...+.+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD----E----RAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSCHHHHHHHHHHHHHHCC----G----GGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC----H----HHHHHHH
Confidence 3577788899999999999999999999876654 45568889999999999999998754 2 3334555
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCch
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST 256 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~ 256 (949)
.+| .|.|+.|+..|+.+|..+....+++.|...++ ..++..+..+++.+.++.. + ..++.|..+|++.++
T Consensus 88 ~~l-~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~ 157 (211)
T 3ltm_A 88 KAL-KDEDGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGD--E----RAVEPLIKALKDEDG 157 (211)
T ss_dssp HHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSH
T ss_pred HHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC--H----HHHHHHHHHHcCCCH
Confidence 555 88999999999999988877666777766553 4567777777777777632 2 234566666777777
Q ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 002235 257 AVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (949)
Q Consensus 257 aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~ 309 (949)
.|+..|+.+|..+.. +. +...+.+++ .++++.+|..+.+.|..+...
T Consensus 158 ~vr~~a~~aL~~~~~-~~----~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 158 WVRQSAADALGEIGG-ER----VRAAMEKLA-ETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHHHHHHCS-HH----HHHHHHHHH-HHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCc-hh----HHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC
Confidence 777777777777753 22 222333333 456677777777777666543
No 34
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.16 E-value=3.7e-08 Score=122.94 Aligned_cols=433 Identities=12% Similarity=0.067 Sum_probs=268.4
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC-CCcchhHHHHHHHHHHhhcCCC---------
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS-EDHTIQKLLLLYLEIIDKTDAK--------- 87 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s-~d~~lKrL~YL~l~~~~~~~~d--------- 87 (949)
++.++-+.+.+++...|..|...|-.+.. .+.+.++..+...+... .+..+|.++-++++.+-....+
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~--~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAV--ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHh--cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34555556677887777655554432221 12233444445433222 4577898888887764211000
Q ss_pred -CCCCchH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCch----hhHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHh
Q 002235 88 -GRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNET----EIIEPLIPSVLQNLQHR--HPYIRRNAILAVMAIY 159 (949)
Q Consensus 88 -~~l~~e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~----el~~~l~~~I~~~L~d~--~pyVRk~A~lal~ki~ 159 (949)
..+-++. -.+-+.+.+-|.++++.+ ..+..+++.|... .-.+.+++.+.+++.+. ++.+|+.|+.++..+.
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 1121332 344566777788887766 6666666665432 33466888888999998 9999999999999998
Q ss_pred cCCCCccccc----chHHHHHHHHccCC--ChhHHHHHHHHHHhcchh---h----H-HHHHHHHHhh-cCccChhHHHH
Q 002235 160 KLPQGEQLLV----DAPEMIEKVLSTEQ--DPSAKRNAFLMLFTCDQD---R----A-INYLLTHVDR-VSEWGELLQMV 224 (949)
Q Consensus 160 ~l~~~~~li~----~~~e~l~~~L~~d~--d~~v~~~Al~~L~~i~~~---~----a-i~~L~~~l~~-i~~~~p~~q~~ 224 (949)
.. ..++.+. .+.+.+.+.+ .+. ++.++..|+.+|..+... . . ..++...+.+ +...++-.+..
T Consensus 159 ~~-~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 159 QD-IDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HH-SCHHHHGGGHHHHHHHHHHHH-STTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred Hh-cCHhhHHhHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 72 2233322 2333444545 444 678999999988875421 0 0 1233333322 33445556777
Q ss_pred HHHHHHHhhhcCchhH----H-HHHHHHHHHHcCCchHHHHHHHHHHHccCCCh----------------------H---
Q 002235 225 VLELIRKVCRTNKGEK----G-KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP----------------------T--- 274 (949)
Q Consensus 225 il~ll~~~~~~~p~~~----~-~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~----------------------~--- 274 (949)
+++.+..++...|... . .+++.+...+.+.++.|+.+|...+..+.... .
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHH
Confidence 8888888776554332 2 56677777777888899998887765552110 1
Q ss_pred -HHHHHHHHHHHHHcc------CCchHHHHHHHHHHHHHHhhChh-hHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 275 -AIRAAANTYSQLLLS------QSDNNVKLIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 275 -~l~~~a~~li~lll~------~~d~nvr~iaL~~L~~l~~~~p~-~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
.++.+...+++.+.. +.++++|..+...|..++...++ ++......+...+.|+++.+|..++..+..++..
T Consensus 317 ~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 123344445555532 34578999999999999876543 3444444455667899999999999999998865
Q ss_pred Cc---HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc------ccHHHHHHHHHHHHhCCCcccHHHHHH
Q 002235 347 RN---INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP------EVASTVVHLLMDFLGDSNVASAIDVII 417 (949)
Q Consensus 347 ~N---v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~------~~~~~~l~~L~~lL~~~~~~v~~e~i~ 417 (949)
-. +...+..+...+..... |.+..+|..+..+++.++..++ +....+++.|+..|.+. ..+...+..
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 32 33344444444444444 5678999999999999998754 34578888999988875 556666777
Q ss_pred HHHHHHHhCc------------------ccHHHHHHHHHHHhcccc--hHHHHHHHhhhccc
Q 002235 418 FVREIIEMNP------------------KLRVSIITRLLDNFYQIR--AARVCTCALWIIGE 459 (949)
Q Consensus 418 ~l~~ii~~~p------------------~~~~~~l~~L~~~l~~i~--~~~v~~~~lwiLGE 459 (949)
.+..++...+ ..-+.++..|...+.+.. ...++..++-.+|.
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~ 534 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHH
Confidence 7777775421 123567888888886542 23444444444443
No 35
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.12 E-value=2.5e-09 Score=109.47 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=135.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHH
Q 002235 96 LICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l 175 (949)
-....+.+.|.|+++.+|..|++.|+.+..++.+ +.+.+.+.|+++.||+.|+.++.++.. + +..+.+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~~L~~~~~----~----~~~~~L 81 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIGD----E----RAVEPL 81 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHcCCCHHHHHHHHHHHHhhCC----H----HHHHHH
Confidence 3457888999999999999999999999987665 455678889999999999999998754 2 334455
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCc
Q 002235 176 EKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPS 255 (949)
Q Consensus 176 ~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s 255 (949)
..+| .|.|+.|+..|+.+|..+....+++.|...++ ..++..+..+++.+.++.. + ..++.|..++.+.+
T Consensus 82 ~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~ 151 (201)
T 3ltj_A 82 IKAL-KDEDGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFALGEIGD--E----RAVEPLIKALKDED 151 (201)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHTC--G----GGHHHHHHHTTCSS
T ss_pred HHHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC--H----HHHHHHHHHHcCCC
Confidence 5555 78999999999999998877767777766653 4577778888888877742 2 24566777777777
Q ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 002235 256 TAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNEL 306 (949)
Q Consensus 256 ~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l 306 (949)
+.|+.+|+.++..+.. +. +...+..++ .++++.+|..+...|.++
T Consensus 152 ~~vr~~A~~aL~~~~~-~~----~~~~L~~~l-~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 152 GWVRQSAADALGEIGG-ER----VRAAMEKLA-ETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHHHCS-HH----HHHHHHHHH-HHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-hh----HHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 8888888888887753 32 223333333 566777888777777665
No 36
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.10 E-value=8.5e-09 Score=121.12 Aligned_cols=330 Identities=10% Similarity=0.081 Sum_probs=227.8
Q ss_pred CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc---ccc--chHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 124 NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ---LLV--DAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 124 ~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~---li~--~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
..+++....+|.+.+.|.+.++.||..|+.++.++.. ..+. ++. ...+.+-++|..+.|+.++..|+..|..+
T Consensus 10 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~--~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp -------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT--SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred chhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3455566678888899999999999999999999987 4332 111 22333334454556899999999999987
Q ss_pred chhh----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCchHHHHHHH
Q 002235 199 DQDR----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPSTAVIYECA 263 (949)
Q Consensus 199 ~~~~----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s~aV~~Eaa 263 (949)
..+. +++.|.+++ ...++-.|...+..+..++..++..+ ...++.|..+|++.+..++..++
T Consensus 88 s~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 164 (529)
T 1jdh_A 88 SHHREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164 (529)
T ss_dssp TTSHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHH
T ss_pred HcCchhHHHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 6432 244454444 34668889999999999987654433 34578899999999988999998
Q ss_pred HHHHccCCC-hHHHH-----HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh----HH-HHHHhheeccCCCCHHH
Q 002235 264 GTLVSLSSA-PTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI----MV-DLIMDVLRALNSPNLDI 332 (949)
Q Consensus 264 ~~l~~l~~~-~~~l~-----~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~----l~-~~~~~il~~L~d~d~~I 332 (949)
.++..+... ++... .....+++++.+..+...++.+...|..+.. +|.. +. ..+..++.++.+++..+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 888877542 32111 1345677777666666778888888877764 3321 11 23455777888999999
Q ss_pred HHHHHHHHHhhcCCC----cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH-----HHHHHHHHH
Q 002235 333 RRKTLDIVLELITPR----NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS-----TVVHLLMDF 403 (949)
Q Consensus 333 r~~aL~lL~~l~~~~----Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~-----~~l~~L~~l 403 (949)
++.++.+|..++... .+..++..|.+-+ . +.+++.+..+..+++.++...+.... ..++.|+++
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll----~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----G---SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT----T---CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH----c---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Confidence 999999999887532 3455666555432 2 35789999999999999875442222 357888888
Q ss_pred HhCCC--cccHHHHHHHHHHHHHhCccc---HH-----HHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc
Q 002235 404 LGDSN--VASAIDVIIFVREIIEMNPKL---RV-----SIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE 466 (949)
Q Consensus 404 L~~~~--~~v~~e~i~~l~~ii~~~p~~---~~-----~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~ 466 (949)
|...+ ..+...++..+..+....|+. +. .++..|++.+.+-..+.++..++|+++..+...+.
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh
Confidence 87633 466777888999887655542 22 35778888887755568999999999998865443
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.10 E-value=4.1e-08 Score=120.37 Aligned_cols=395 Identities=12% Similarity=0.062 Sum_probs=262.1
Q ss_pred hhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchH---HH----HHHHHHhhcCCCCHHHHHHHHHHhhcCCch
Q 002235 54 LFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEM---IL----ICQNLRNNLQHPNEYIRGVTLRFLCRLNET 126 (949)
Q Consensus 54 lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~---iL----v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~ 126 (949)
.+-+.|+-.+..++..-+--+.-++..+..-. +++ ++ ++..|.+=++|+++.++-.|+.+++.+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~------~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~ 320 (810)
T 3now_A 247 QIDEYIKDKLLAPDMESKVRVTVAITALLNGP------LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK 320 (810)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSS------HHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCChHhHHHHHHHHHHHhcCC------HHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Confidence 33444443445555555544444455543222 232 11 346777778899999999999988887643
Q ss_pred h-----hHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCC-Ccc--cc-----cchHHHHHHHHccC-CChhHHHHHH
Q 002235 127 E-----IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ-GEQ--LL-----VDAPEMIEKVLSTE-QDPSAKRNAF 192 (949)
Q Consensus 127 e-----l~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~-~~~--li-----~~~~e~l~~~L~~d-~d~~v~~~Al 192 (949)
. +.+.-.|.+...+...++.+|..|+.++.|+-.-.. ++. .+ +...+.+.++|.++ .|+.++.+|+
T Consensus 321 ~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Av 400 (810)
T 3now_A 321 KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400 (810)
T ss_dssp HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 2 222234888889999999999999999999964100 111 11 12234455656443 2889999999
Q ss_pred HHHHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCc-h----------------------
Q 002235 193 LMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK-G---------------------- 238 (949)
Q Consensus 193 ~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p-~---------------------- 238 (949)
..|.++..+. +++.|+.+++ ..++-.|-.++..|..++...+ .
T Consensus 401 eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~---s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ 477 (810)
T 3now_A 401 DGLAYLTLDAECKEKLIEDKASIHALMDLAR---GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE 477 (810)
T ss_dssp HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH---TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred HHHHHHhCCcHHHHHHHHccchHHHHHHHhC---CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence 9999885331 3455666665 3456678888999998876431 0
Q ss_pred ------hH--------HHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHH-----HHHHHHHHHccCCchHHHHHH
Q 002235 239 ------EK--------GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRA-----AANTYSQLLLSQSDNNVKLIV 299 (949)
Q Consensus 239 ------~~--------~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~-----~a~~li~lll~~~d~nvr~ia 299 (949)
.. .-.++.|..+|.+.++.|+-+|+++|.+++.+++.... +..+++.++ .++++..|..|
T Consensus 478 ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~A 556 (810)
T 3now_A 478 LDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMA-LEGTEKGKRHA 556 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHH
Confidence 01 12468899999999999999999999999866442221 346777877 56678899999
Q ss_pred HHHHHHHHhh-ChhhH------HHHHHhheeccCCC-CHHHHHHHHHHHHhhcCC--CcHHHHHHH-HHHHHHHhccCCc
Q 002235 300 LDRLNELRSS-HRDIM------VDLIMDVLRALNSP-NLDIRRKTLDIVLELITP--RNINEVVLM-LKKEVVKTQSGEL 368 (949)
Q Consensus 300 L~~L~~l~~~-~p~~l------~~~~~~il~~L~d~-d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~~-L~kel~~~~~~~~ 368 (949)
...|..|... +|... .+.+..++.+|.++ +...+..|+..|..++.. .+...++.. -...+.....
T Consensus 557 a~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--- 633 (810)
T 3now_A 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--- 633 (810)
T ss_dssp HHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---
T ss_pred HHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---
Confidence 9999998763 45431 23345566677654 444556799999998864 444444431 0111222222
Q ss_pred cCCHHHHHHHHHHHHHhHccCcccH------HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHH------HHHHH
Q 002235 369 EKNGEYRQMLIQAIHSCAIKFPEVA------STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRV------SIITR 436 (949)
Q Consensus 369 d~~~e~r~~lv~aI~~la~kf~~~~------~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~------~~l~~ 436 (949)
+.+...++.+..+|+.++.. ++.. ...+..|+.++......+..++..+|..+...+|+... .++..
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 23568999999999998852 2221 13577889999888777888888999998875665433 35668
Q ss_pred HHHHhcccchHHHHHHHhhhcccCCCC
Q 002235 437 LLDNFYQIRAARVCTCALWIIGEYCQS 463 (949)
Q Consensus 437 L~~~l~~i~~~~v~~~~lwiLGEy~~~ 463 (949)
|++++.+ .+.+++..++|.++.....
T Consensus 713 Lv~LL~s-~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 713 LHTLIAN-PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHhC
Confidence 8888876 5778999999999987653
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.10 E-value=1.2e-08 Score=120.88 Aligned_cols=318 Identities=14% Similarity=0.147 Sum_probs=215.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcC----Cch---hhH-HHHHHHHHHhcc-CCChHHHHHHHHHHHHHhcCCCCccc
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRL----NET---EII-EPLIPSVLQNLQ-HRHPYIRRNAILAVMAIYKLPQGEQL 167 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I----~~~---el~-~~l~~~I~~~L~-d~~pyVRk~A~lal~ki~~l~~~~~l 167 (949)
.+..+.+.++++|+-.+-.|++.+.++ ..| .++ ..++|.+.++|. +.+|.++..|+-|+..|.. ..++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~--~~~~~ 154 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQ 154 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CCHHH
Confidence 346677778888887777777666543 222 222 236788888885 5679999999999999987 55543
Q ss_pred cc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhc--CccChhHHHHHHHHH
Q 002235 168 LV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRV--SEWGELLQMVVLELI 229 (949)
Q Consensus 168 i~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i--~~~~p~~q~~il~ll 229 (949)
.. ...+.+-.+| .++++.++..|+.+|..+..+. +++.|..++..- .......+..+...+
T Consensus 155 ~~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 21 1234444544 8899999999999999986432 234455554321 122233455566677
Q ss_pred HHhhhcC-c----hhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH-HHH-----HHHHHHHHHccCCchHHHHH
Q 002235 230 RKVCRTN-K----GEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA-IRA-----AANTYSQLLLSQSDNNVKLI 298 (949)
Q Consensus 230 ~~~~~~~-p----~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~-l~~-----~a~~li~lll~~~d~nvr~i 298 (949)
..+++.. | ......++.|..+|++.++.|+..|+.+|.++...+.. .+. +...++.++ .++++.++..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~ 312 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTP 312 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHH
Confidence 7776643 1 12356789999999999999999999999998754332 221 234566665 6788999999
Q ss_pred HHHHHHHHHhhChhhHH-----HHHHhheeccCCCCHHHHHHHHHHHHhhcC--CCcHHHH-----HHHHHHHHHHhccC
Q 002235 299 VLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIVLELIT--PRNINEV-----VLMLKKEVVKTQSG 366 (949)
Q Consensus 299 aL~~L~~l~~~~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~~L~kel~~~~~~ 366 (949)
+++.|..|+...+..-. ..+..+..+|.+++..||+.|.-+|..++. +.....+ +..|...+ .
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL----~- 387 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL----S- 387 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH----H-
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh----c-
Confidence 99999999765443211 123446677889999999999999998864 3333322 33333222 2
Q ss_pred CccCCHHHHHHHHHHHHHhHccCcccH------HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh
Q 002235 367 ELEKNGEYRQMLIQAIHSCAIKFPEVA------STVVHLLMDFLGDSNVASAIDVIIFVREIIEM 425 (949)
Q Consensus 367 ~~d~~~e~r~~lv~aI~~la~kf~~~~------~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~ 425 (949)
+.+.+.+..++.+|+.++..-.... ..+++.|+++|......+...++..|..|++.
T Consensus 388 --~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 388 --KADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3467899999999999886432211 23578899999988877877788888888764
No 39
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.08 E-value=4.8e-09 Score=136.65 Aligned_cols=377 Identities=11% Similarity=0.123 Sum_probs=236.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc-cccc
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ-LLVD 170 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~-------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~-li~~ 170 (949)
..+...++||++-+|-.|+..|.+.. ++...+.+++.+.+.+.|+++.||+.|+.++..+.. ..++ .++.
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~~~~~~~~~ 86 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--KVKEYQVET 86 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TSCHHHHHH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hCCHHHHHH
Confidence 45666688999999998888776542 234566788889999999999999999999999988 4443 2222
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHhcchhh------------HHHHHH-HHHhhcC-ccChhHHHHHHHHHHHhhhcC
Q 002235 171 APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR------------AINYLL-THVDRVS-EWGELLQMVVLELIRKVCRTN 236 (949)
Q Consensus 171 ~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~------------ai~~L~-~~l~~i~-~~~p~~q~~il~ll~~~~~~~ 236 (949)
+.+.+-..| .|.++.++..|..+|..+.... .++.+. .+++.+. ..++-.+...++.+..++...
T Consensus 87 i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 223232333 6777888888888777664221 122222 2223333 345667888899998887532
Q ss_pred ch----hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC--hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhC
Q 002235 237 KG----EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (949)
Q Consensus 237 p~----~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~ 310 (949)
+. ....+++.+...|.+.++.|+..|++++..+... +..+......+++.+....++.+|-.+++.+..++...
T Consensus 166 ~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 21 3467888888899999999999999999887542 11222344556666655545678888899999988876
Q ss_pred hhhHHHH----HHhheeccCCCCHHHHHHHHHHHHhhcC--CC----cHHHHHHHHHHHHHHh--------------c--
Q 002235 311 RDIMVDL----IMDVLRALNSPNLDIRRKTLDIVLELIT--PR----NINEVVLMLKKEVVKT--------------Q-- 364 (949)
Q Consensus 311 p~~l~~~----~~~il~~L~d~d~~Ir~~aL~lL~~l~~--~~----Nv~~Iv~~L~kel~~~--------------~-- 364 (949)
|..+.+| ...++..+.|++..+|..++..+..++. +. .+..++..+.+.+... .
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~ 325 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence 6555443 3445556778888999888877765543 22 2344444333211100 0
Q ss_pred --cCC------------ccCCHHHHHHHHHHHHHhHccCcccHH----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHhC
Q 002235 365 --SGE------------LEKNGEYRQMLIQAIHSCAIKFPEVAS----TVVHLLMDFLGDSNVASAIDVIIFVREIIEMN 426 (949)
Q Consensus 365 --~~~------------~d~~~e~r~~lv~aI~~la~kf~~~~~----~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~ 426 (949)
..+ .+...+.|..+..+++.++..+|.... .++..++..+.+....+...++..+..+++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 000 011234689999999999987775333 33455555566777778888888887777642
Q ss_pred cc-------------------cHHH----HHHHHHHHhcccchHHHHHHHhhhcccCCCCC-----CcHHHHHHHHHHHh
Q 002235 427 PK-------------------LRVS----IITRLLDNFYQIRAARVCTCALWIIGEYCQSL-----SEVENGIATIKQCL 478 (949)
Q Consensus 427 p~-------------------~~~~----~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~-----~~~~~~~~~i~~~l 478 (949)
.. .-.. ++..+...+.+ +.+.++.++++.+|+..... +.....+..+...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 21 1122 33333344554 34567788888888764432 22345566666665
Q ss_pred C
Q 002235 479 G 479 (949)
Q Consensus 479 ~ 479 (949)
.
T Consensus 485 ~ 485 (1230)
T 1u6g_C 485 N 485 (1230)
T ss_dssp T
T ss_pred c
Confidence 4
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.07 E-value=1.7e-08 Score=122.42 Aligned_cols=329 Identities=10% Similarity=0.078 Sum_probs=216.1
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc---cc--chHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002235 125 ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL---LV--DAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 125 ~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l---i~--~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~ 199 (949)
++.+....++.+.+.|.+.++.||.+|+.++.++.. ..+.. +. ...+.+-++|..+.|+.++.+|+..|..+.
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~--~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK--KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHT--STTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHC--CChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 334445556777778888888888888888888877 44321 11 122333344534457888888888887765
Q ss_pred hhh----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhH-----HHHHHHHHHHHcCCchHHHHHHHH
Q 002235 200 QDR----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEK-----GKYIKIIISLLNAPSTAVIYECAG 264 (949)
Q Consensus 200 ~~~----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~-----~~li~~L~~lL~s~s~aV~~Eaa~ 264 (949)
.+. +++.|.+++ ...++-.|...+..|..++..++... ...++.|..+|++.++.+...++.
T Consensus 86 ~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 86 HHREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp TSHHHHHHHHTTTHHHHHHHHT---TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred cChhhHHHHHHcCCHHHHHHHH---hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 332 234444443 34567788888888888876543322 335678888888888877777778
Q ss_pred HHHccCC-ChHHHH-----HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChh----hHH-HHHHhheeccCCCCHHHH
Q 002235 265 TLVSLSS-APTAIR-----AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRD----IMV-DLIMDVLRALNSPNLDIR 333 (949)
Q Consensus 265 ~l~~l~~-~~~~l~-----~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~----~l~-~~~~~il~~L~d~d~~Ir 333 (949)
+|..+.. .++... ..+..+++++.+..+..+++.++..|..+.. ++. ++. ..+..++.++.+++..++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 8877763 332211 1345677777665556778888888877764 222 111 124456677888899999
Q ss_pred HHHHHHHHhhcCC----CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHH-----HHHHHHHHHH
Q 002235 334 RKTLDIVLELITP----RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVAS-----TVVHLLMDFL 404 (949)
Q Consensus 334 ~~aL~lL~~l~~~----~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~-----~~l~~L~~lL 404 (949)
+.++.+|..++.. ..+..++..|.+- .. +.+.+.+..+..+++.++...+.... ..++.|+++|
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~l----L~---~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL 314 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQL----LG---SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHH----TT---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHH----Hc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988753 2344566655532 22 34688999999999999876443222 3578888888
Q ss_pred hCCC--cccHHHHHHHHHHHHHhCcc---cH-----HHHHHHHHHHhcccchHHHHHHHhhhcccCCCCCCc
Q 002235 405 GDSN--VASAIDVIIFVREIIEMNPK---LR-----VSIITRLLDNFYQIRAARVCTCALWIIGEYCQSLSE 466 (949)
Q Consensus 405 ~~~~--~~v~~e~i~~l~~ii~~~p~---~~-----~~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~~ 466 (949)
.+.+ ..+...++..|..+....|+ .+ ..++..|.+.+.+-..+.++..++|+++..+...+.
T Consensus 315 ~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 8644 46777788899988765553 12 246888888888765678999999999998765443
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.01 E-value=4.1e-08 Score=112.78 Aligned_cols=361 Identities=12% Similarity=0.064 Sum_probs=230.3
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC-CCcchhHHHHHHHHHHhhcCC----------
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS-EDHTIQKLLLLYLEIIDKTDA---------- 86 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s-~d~~lKrL~YL~l~~~~~~~~---------- 86 (949)
.+.++-..+.+++...|..|-+.|-.+... +.+.++......+..+ .+...|+++-++++.+-+...
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVE--NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345555667788887777776666554321 1233333344422222 367899999998888632210
Q ss_pred CCCCCchH-HHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchh----hHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHh
Q 002235 87 KGRVLPEM-ILICQNLRNNLQHPNEYIRGVTLRFLCRLNETE----IIEPLIPSVLQNLQHR--HPYIRRNAILAVMAIY 159 (949)
Q Consensus 87 d~~l~~e~-iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~e----l~~~l~~~I~~~L~d~--~pyVRk~A~lal~ki~ 159 (949)
-..+.++. --+-+.+..-|.++++.+ ..+..+++.|...+ --+.++|.+.+++.+. ++.+|..|+.++..+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 01121332 345566777788888877 66666666664322 3466888889999998 9999999999999998
Q ss_pred cCCCC-cccccc----hHHHHHHHHccCC--ChhHHHHHHHHHHhcc---hhh-----HHHHHHHHHhh-cCccChhHHH
Q 002235 160 KLPQG-EQLLVD----APEMIEKVLSTEQ--DPSAKRNAFLMLFTCD---QDR-----AINYLLTHVDR-VSEWGELLQM 223 (949)
Q Consensus 160 ~l~~~-~~li~~----~~e~l~~~L~~d~--d~~v~~~Al~~L~~i~---~~~-----ai~~L~~~l~~-i~~~~p~~q~ 223 (949)
. .. ++.... +.+.+..+| .+. ++.|+..|+.++..+. .+. ...++...+.+ ....++-.+.
T Consensus 159 ~--~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~ 235 (462)
T 1ibr_B 159 Q--DIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV 235 (462)
T ss_dssp H--HSCGGGTGGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred H--hCCchhhHhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 7 33 333322 234444555 555 7889999999887632 111 12344444433 3345666677
Q ss_pred HHHHHHHHhhhcCchh----HH-HHHHHHHHHHcCCchHHHHHHHHHHHccCCCh-------------------------
Q 002235 224 VVLELIRKVCRTNKGE----KG-KYIKIIISLLNAPSTAVIYECAGTLVSLSSAP------------------------- 273 (949)
Q Consensus 224 ~il~ll~~~~~~~p~~----~~-~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~------------------------- 273 (949)
.+++.+..++...|.. .. .+++.+...+++.++.|+..|+..+..+....
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (462)
T 1ibr_B 236 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (462)
T ss_dssp HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHH
Confidence 7888888877654432 23 67777778888899999999888765553110
Q ss_pred -HHHHHHHHHHHHHHcc------CCchHHHHHHHHHHHHHHhhChh-hHHHHHHhheeccCCCCHHHHHHHHHHHHhhcC
Q 002235 274 -TAIRAAANTYSQLLLS------QSDNNVKLIVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 274 -~~l~~~a~~li~lll~------~~d~nvr~iaL~~L~~l~~~~p~-~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
..+..+...+++.+.. +.++++|..+...|..++...++ ++......+...+.++++.+|.-++..+..++.
T Consensus 316 ~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 1123344444555532 23568999999999999887664 333344445567889999999999999999885
Q ss_pred CC-------cHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcc
Q 002235 346 PR-------NINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (949)
Q Consensus 346 ~~-------Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~ 391 (949)
.. .+..++..|. .... |.+..+|..+..+++.++..+++
T Consensus 396 ~~~~~~~~~~l~~~~~~l~----~~l~---d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 396 GPEPSQLKPLVIQAMPTLI----ELMK---DPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SSCTTTTCTTTTTHHHHHH----HGGG---CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcHHHHHHHHHHHHHHHH----HHhc---CCCHHHHHHHHHHHHHHHHhccc
Confidence 32 2244554444 3433 56788999999999998876554
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.98 E-value=2.6e-08 Score=102.66 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=142.1
Q ss_pred CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHH
Q 002235 52 PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEP 131 (949)
Q Consensus 52 s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~ 131 (949)
+..+..+++ .+.++|...|+.+--.+..+. + ++ ++..|.+-|.|+++.+|..|+++|+.+..++.++
T Consensus 18 ~~~~~~L~~-~L~~~~~~vR~~A~~~L~~~~--~------~~---~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~- 84 (211)
T 3ltm_A 18 PEKVEMYIK-NLQDDSYYVRRAAAYALGKIG--D------ER---AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE- 84 (211)
T ss_dssp GGGHHHHHH-HTTCSSHHHHHHHHHHHHHHC--C------GG---GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH-
T ss_pred HhHHHHHHH-HHcCCCHHHHHHHHHHHHHhC--C------cc---HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH-
Confidence 556677777 457888888877766666551 1 12 3466677788899999999999999999877654
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHH
Q 002235 132 LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHV 211 (949)
Q Consensus 132 l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l 211 (949)
.+.+++.|++|.||..|+.++.++.. + +..+.+..+| .|.|+.|+..|+.+|..+....++..|...+
T Consensus 85 ---~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 152 (211)
T 3ltm_A 85 ---PLIKALKDEDGWVRQSAAVALGQIGD----E----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGDERAVEPLIKAL 152 (211)
T ss_dssp ---HHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred ---HHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44567889999999999999998754 2 3334555555 8899999999999999998777788777765
Q ss_pred hhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC
Q 002235 212 DRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA 272 (949)
Q Consensus 212 ~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~ 272 (949)
+ ..+++.+..+++.+.++.. ...++.|..++++.++.|+..|+.+|..+...
T Consensus 153 ~---d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 153 K---DEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred c---CCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4 5678899999999988842 35667788888889999999999999988654
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.98 E-value=2.1e-08 Score=102.60 Aligned_cols=186 Identities=18% Similarity=0.171 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH
Q 002235 129 IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL 208 (949)
Q Consensus 129 ~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~ 208 (949)
-+...+.+.+.|.|+++.||..|+.++.++.. + ...+.+..+| .+.|+.++..|+..|..+....+++.|.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----~----~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~~~~~~L~ 82 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----E----RAVEPLIKAL-KDEDAWVRRAAADALGQIGDERAVEPLI 82 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----G----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----h----hHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 34567788899999999999999999998754 2 2334444555 7899999999999999998877888888
Q ss_pred HHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Q 002235 209 THVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLL 288 (949)
Q Consensus 209 ~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll 288 (949)
..++ ..+|+.+...++.+.++.. + ..++.|..+|.+.++.|+..|+.++..+.. +. +...++.++
T Consensus 83 ~~l~---d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~----~~~~L~~~l- 147 (201)
T 3ltj_A 83 KALK---DEDGWVRQSAAVALGQIGD--E----RAVEPLIKALKDEDWFVRIAAAFALGEIGD-ER----AVEPLIKAL- 147 (201)
T ss_dssp HHTT---CSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-GG----GHHHHHHHT-
T ss_pred HHHc---CCCHHHHHHHHHHHHHhCc--H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HH----HHHHHHHHH-
Confidence 7765 5789999999999998743 2 245677788899999999999999999965 32 333445544
Q ss_pred cCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 289 SQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 289 ~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
.++++.+|..++..|..+. .+..+. .+..++.|++..+|..|++.|.++.
T Consensus 148 ~d~~~~vr~~A~~aL~~~~--~~~~~~----~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 148 KDEDGWVRQSAADALGEIG--GERVRA----AMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC--SHHHHH----HHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhC--chhHHH----HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999883 344433 3455678899999999999888764
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.98 E-value=9.3e-07 Score=104.18 Aligned_cols=315 Identities=15% Similarity=0.164 Sum_probs=219.4
Q ss_pred cccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCC-------chhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCC
Q 002235 16 PAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLP-------QLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKG 88 (949)
Q Consensus 16 ~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s-------~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~ 88 (949)
..+++++-+.+.|++...+.++.+++=.+.+...+-+ .+.+..+++|-.+++..++.-+--++..++.-+
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~--- 132 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT--- 132 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC---
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC---
Confidence 3468999999999999999888887776666655432 467788885533455677766655566664333
Q ss_pred CCCchH---HH---HHHHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhHHH-----HHHHHHHhccCCC-----hHHHHH
Q 002235 89 RVLPEM---IL---ICQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEIIEP-----LIPSVLQNLQHRH-----PYIRRN 150 (949)
Q Consensus 89 ~l~~e~---iL---v~NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~~~-----l~~~I~~~L~d~~-----pyVRk~ 150 (949)
+|- +. ++..|.+-|+++++.+|-.|+.+|++|.. ++.-.. .++.+...+.+.+ ..+.++
T Consensus 133 ---~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~ 209 (510)
T 3ul1_B 133 ---SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209 (510)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred ---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHH
Confidence 232 22 46778899999999999999999999852 333222 3567777776543 457888
Q ss_pred HHHHHHHHhcCCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhc
Q 002235 151 AILAVMAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRV 214 (949)
Q Consensus 151 A~lal~ki~~l~~~~~li-----~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i 214 (949)
|+.++..+.. ...... ..+.+.+-++| .+.|+.++..|+.+|..+.... .++.|+.++.
T Consensus 210 a~~~L~nl~~--~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-- 284 (510)
T 3ul1_B 210 LTWTLSNLCR--NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-- 284 (510)
T ss_dssp HHHHHHHHHC--CCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT--
T ss_pred HHHHHHHHhh--cccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc--
Confidence 9999988877 322111 12234455544 7889999999999999886432 1344555543
Q ss_pred CccChhHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHH
Q 002235 215 SEWGELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTY 283 (949)
Q Consensus 215 ~~~~p~~q~~il~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~l 283 (949)
..++-.|...++.+..++..++.....+ ++.|..+|++.++.|+.+|+.+|.++... +...+. +...+
T Consensus 285 -~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 285 -ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp -CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred -CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 5667789999999999987776655444 35677889999999999999999999753 322222 33455
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHhh-Chhh----H-HHHHHhheeccCCCCHHHHHHHHHHHHhh
Q 002235 284 SQLLLSQSDNNVKLIVLDRLNELRSS-HRDI----M-VDLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 284 i~lll~~~d~nvr~iaL~~L~~l~~~-~p~~----l-~~~~~~il~~L~d~d~~Ir~~aL~lL~~l 343 (949)
+.++ .+++..+|..+...|..++.. .++. + ...+..+..+|.++|..|+..+|+.|..+
T Consensus 364 v~lL-~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 364 VGVL-SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHH-HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6655 677899999999999888764 2221 1 12345577788999999999999988765
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.96 E-value=1.2e-06 Score=103.80 Aligned_cols=316 Identities=14% Similarity=0.161 Sum_probs=221.5
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCC
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~-------s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l 90 (949)
.++++.+.+.|++...+..+++.+-.+.....+- ..+.+..++++-.+++..++.-+--++..++..+++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-- 154 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-- 154 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH--
Confidence 5788999999999999988888887777666543 2567778886644556778776666666665433210
Q ss_pred CchHHH---HHHHHHhhcCCCCHHHHHHHHHHhhcCC--chhhHHH-----HHHHHHHhccCCC-----hHHHHHHHHHH
Q 002235 91 LPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLN--ETEIIEP-----LIPSVLQNLQHRH-----PYIRRNAILAV 155 (949)
Q Consensus 91 ~~e~iL---v~NsL~KDL~~~N~~iR~~ALr~L~~I~--~~el~~~-----l~~~I~~~L~d~~-----pyVRk~A~lal 155 (949)
...+. ++..|.+=|.++++.+|-.|+.+|++|. .++.-.. .++.+...+.+.+ ..+.++|+.++
T Consensus 155 -~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 155 -TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp -HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred -HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 01222 5678888999999999999999999985 3443332 3567777876543 35678899999
Q ss_pred HHHhcCCCCcccc-----cchHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccCh
Q 002235 156 MAIYKLPQGEQLL-----VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGE 219 (949)
Q Consensus 156 ~ki~~l~~~~~li-----~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p 219 (949)
..+.. ...... ....+.+-.+| .+.|+.++..|+.+|..+.... .++.|+.++ ...++
T Consensus 234 ~nl~~--~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL---~~~~~ 307 (529)
T 3tpo_A 234 SNLCR--NKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL---GATEL 307 (529)
T ss_dssp HHHHC--CCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH---TCSCH
T ss_pred HHHHh--cccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh---cCCCh
Confidence 88877 332211 12234455544 7889999999999998875321 234455554 35677
Q ss_pred hHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHc
Q 002235 220 LLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLL 288 (949)
Q Consensus 220 ~~q~~il~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll 288 (949)
-.|...++.++.++..++.....+ ++.|..+|++.++.|+.+|+.+|.++... +..... +...++.++
T Consensus 308 ~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL- 386 (529)
T 3tpo_A 308 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL- 386 (529)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh-
Confidence 889999999999987776655443 46788999999999999999999998643 322221 334556655
Q ss_pred cCCchHHHHHHHHHHHHHHhh-Chhh---H-H-HHHHhheeccCCCCHHHHHHHHHHHHhh
Q 002235 289 SQSDNNVKLIVLDRLNELRSS-HRDI---M-V-DLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 289 ~~~d~nvr~iaL~~L~~l~~~-~p~~---l-~-~~~~~il~~L~d~d~~Ir~~aL~lL~~l 343 (949)
.+++..+|..|...|..++.. .++- + + ..+..+..+|.++|..++..+|+.|..+
T Consensus 387 ~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 387 SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447 (529)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 677889999999999888764 2321 1 1 2355577788999999999998887754
No 46
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=98.93 E-value=5.4e-08 Score=104.37 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=146.3
Q ss_pred CcEEEEEEE-EEecceeEEEEEEEecChhhhcceEEEEeecC----CeEEeecCCcceeCCCCeeEEEEEEEEecCCcce
Q 002235 726 DPVYAEAYV-TVHHYDIVLDVTVINRTKETLQNLCLELATMG----DLKLVERPQNYTLAPESSKQIKANIKVSSTETGV 800 (949)
Q Consensus 726 dp~Y~ea~v-~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g----~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~e~g~ 800 (949)
|+.---.+. ...+....+-+++.|+++..|+|+++++.+.. .|.+...|.+.++.|++.....+.++...+=...
T Consensus 54 D~~IQIg~kse~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~~pF~~~ 133 (273)
T 3hs8_A 54 NQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEA 133 (273)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCCCCC
T ss_pred CCcEEEEEEEEEeCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEcccccCC
Confidence 554333444 44566788899999999999999999998765 3777777777889999988888888776655555
Q ss_pred eeeeEEEecCCccccceEEecceeeccccccccccCChhhhHHhhcccC-cCcEE--EeeccCCCHHHHHHHHHHHcCCe
Q 002235 801 IFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFE-WENKV--AVNTVIQDEKEFLDHIIKSTNMK 877 (949)
Q Consensus 801 ifg~i~y~~~~~~~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efe-wEnk~--~v~~~~~~l~~~l~~li~~tnm~ 877 (949)
+-=++.|... |.... +.| -+.|.+.||+.|+.++.++|++.|..+. -+.+. .++...+...+++..+++.+||+
T Consensus 134 P~l~isf~~~-g~~~~-~~L-kLPi~~~kf~~p~~~~~~~F~~rWkql~~~~~E~q~v~~~~~~~~~~~v~~~l~~lg~~ 210 (273)
T 3hs8_A 134 PVLNIQFRYG-GTFQN-VSV-KLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSA 210 (273)
T ss_dssp CEEEEEEEET-TEEEE-EEE-ECCCCGGGGEEECCCCHHHHHHHHHHCCSGGGEEEEEEECSSCCCHHHHHHHHHHHTCE
T ss_pred CEEEEEEEEC-CeEEE-EEE-ecceehhheeccccCCHHHHHHHHHhcCCCCceEEEEecCCCCCCHHHHHHHHHhCCeE
Confidence 5556667642 22223 366 6788999999999999999999999986 33332 23345555778999999999999
Q ss_pred ecCCCCccCCCchHHHHHhhccccc-CceEEEEEEEEEecCCceEEEEEEeeCChhHHHhhhhhh
Q 002235 878 CLTAPSALDGDCGFLAANLYAKSVF-GEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKI 941 (949)
Q Consensus 878 ~l~~~~~~~~~~~~~~~nL~~~s~~-ge~al~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~~i 941 (949)
+|++.+..+.+ ++ ++|.... ...+.+=+++|-+.. +....+.|||.+.+++.-+.+-|
T Consensus 211 vl~g~Dpn~~n--~v---~AGi~~t~~g~~gcLvRle~n~~-~~~~rlTVRSt~~~vs~~i~~~i 269 (273)
T 3hs8_A 211 LLEEVDPNPAN--FV---GAGIIHTKTTQIGCLLRLEPNLQ-AQMYRLTLRTSKDTVSQRLCELL 269 (273)
T ss_dssp ECTTSSSSTTS--EE---EEEEEECSSCEEEEEEEEEEETT-TTEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCccc--EE---EEEEEEeCCCCEEEEEEEEEccc-CCEEEEEEEECChhHHHHHHHHH
Confidence 99986644433 11 1222221 123444455565443 47999999999999998887655
No 47
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.90 E-value=3.4e-08 Score=110.14 Aligned_cols=276 Identities=11% Similarity=0.079 Sum_probs=132.4
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTH 210 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~ 210 (949)
.+.+.+.+++.+++...||-.++.+-.+.+ ..++.+ =..+-+.+=+ .++|+.+++.|+..|+.|....-++++...
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~--~~~e~i-Lv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~m~~~l~~~ 143 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSC--IAEDVI-IVTSSLTKDM-TGKEDSYRGPAVRALCQITDSTMLQAIERY 143 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTT--TSSCGG-GGHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--CHHHHH-HHHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 455666666666666666666666655444 323332 2223333323 556666666666666666544434444333
Q ss_pred Hhh-cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcc
Q 002235 211 VDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLS 289 (949)
Q Consensus 211 l~~-i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~ 289 (949)
+++ +.+.+|+..-..+=...++.+.+|+..+.+++-+.+++.+++++|+|.|..++..+.... +.+...++..|..
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---~~a~~kLv~~l~~ 220 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---RLAVSKMISKFTR 220 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---hHHHHHHHHHHhc
Confidence 332 345566665555555556667777777778888889999999999999999888886532 1234444555533
Q ss_pred C--CchHHHHHHHHHHHHHHhhC-hhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccC
Q 002235 290 Q--SDNNVKLIVLDRLNELRSSH-RDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSG 366 (949)
Q Consensus 290 ~--~d~nvr~iaL~~L~~l~~~~-p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~ 366 (949)
. .++-.....++.+..+...+ |..-..+..-+..+|.+.+..|--.|..+++.+-+... .++.....-+..+..
T Consensus 221 ~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~~~a~~~L~~fLs- 297 (355)
T 3tjz_B 221 HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KELAPAVSVLQLFCS- 297 (355)
T ss_dssp SCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHH-
T ss_pred CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHc-
Confidence 2 13444555566555665555 55555666667788999999999999999998865211 111111112223333
Q ss_pred CccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHH
Q 002235 367 ELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIF 418 (949)
Q Consensus 367 ~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~ 418 (949)
..+.+.|-.+++.|..++.++|..-..+-..+.+++.|++..++.-++..
T Consensus 298 --s~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 298 --SPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp --SSSSSSHHHHHHCC------------------------------------
T ss_pred --CCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHH
Confidence 34668999999999999999999988899999999999887766655543
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.83 E-value=3.1e-07 Score=96.31 Aligned_cols=206 Identities=15% Similarity=0.207 Sum_probs=128.3
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc-----chHHHHHHHHccCCChhHHHHHHHHHHhcchh------
Q 002235 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD------ 201 (949)
Q Consensus 133 ~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~-----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~------ 201 (949)
+|.+.+.|.+.++.+|..|+.++..+.. ..++... ...+.+-++| .+.|+.++..|+.+|..+..+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIAS--GPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 3445555666666666666666666655 3332211 1122233333 455566666666666665433
Q ss_pred -----hHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHH-----HHHHHHHHHHcCCchHHHHHHHHHHHccCC
Q 002235 202 -----RAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSS 271 (949)
Q Consensus 202 -----~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~-----~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~ 271 (949)
.+++.|..+++ ..++..+...+..+..++..++.... ..++.|..+|++.++.|+..|+.++.++..
T Consensus 81 ~~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 12333333332 34566666667777666655444333 346778888899999999999999999975
Q ss_pred C-hHHHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH-----HHHHhheeccCCCCHHHHHHHHHHH
Q 002235 272 A-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSPNLDIRRKTLDIV 340 (949)
Q Consensus 272 ~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~-----~~~~~il~~L~d~d~~Ir~~aL~lL 340 (949)
. +...+. +...+++++ .++++.+|..++..|..+...+|...+ ..+..+..++.+++..+|..|+.+|
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3 322121 345556655 578899999999999999876555332 2345577788899999999999999
Q ss_pred HhhcC
Q 002235 341 LELIT 345 (949)
Q Consensus 341 ~~l~~ 345 (949)
..++.
T Consensus 237 ~~l~~ 241 (252)
T 4hxt_A 237 ENIKS 241 (252)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87653
No 49
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.75 E-value=1.3e-06 Score=91.49 Aligned_cols=208 Identities=16% Similarity=0.219 Sum_probs=157.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhHH-----HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc-
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEIIE-----PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV- 169 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~~-----~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~- 169 (949)
+..|.+-|+++++.+|-.|+++|+++.. ++... ..++.+.+.+.+.++.||..|+.++.++.. .+++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc--CChHHHHH
Confidence 4567788899999999999999999843 22222 367888999999999999999999999988 5454332
Q ss_pred ----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhh
Q 002235 170 ----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCR 234 (949)
Q Consensus 170 ----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~ 234 (949)
...+.+-.+| .+.|+.++.+|+.+|..+.... +++.|.+++ ...++..+...+..+..++.
T Consensus 82 ~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL---TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHHc
Confidence 2344555655 7889999999999999987321 234444443 45678899999999999988
Q ss_pred cCchhHH-----HHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCCchHHHHHHHHHH
Q 002235 235 TNKGEKG-----KYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRL 303 (949)
Q Consensus 235 ~~p~~~~-----~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L 303 (949)
.++.... ..++.|..+|.+.++.|+..|+.++.++... +...+. +...+++++ .++++.+|..++..|
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL-TSTDSEVQKEAQRAL 236 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-CCCcHHHHHHHHHHH
Confidence 7665433 3678999999999999999999999999753 332222 234455544 678999999999999
Q ss_pred HHHHhhChh
Q 002235 304 NELRSSHRD 312 (949)
Q Consensus 304 ~~l~~~~p~ 312 (949)
..|....+.
T Consensus 237 ~~l~~~~~~ 245 (252)
T 4hxt_A 237 ENIKSGGWL 245 (252)
T ss_dssp HHHHHTCBC
T ss_pred HHHHcCCCc
Confidence 999876554
No 50
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=3.6e-05 Score=94.86 Aligned_cols=358 Identities=13% Similarity=0.109 Sum_probs=219.9
Q ss_pred CCcccHHHHHHHhcCCChHHHH-HHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHH-HHHHHHHhhcCCCCCCC
Q 002235 14 GTPAIANEIKEALEGNDVPAKV-DAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLL-LLYLEIIDKTDAKGRVL 91 (949)
Q Consensus 14 ~~~~~~~eir~~L~s~~~~~k~-~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~-YL~l~~~~~~~~d~~l~ 91 (949)
.+...+..+|..+++.+ .++ .|..=.=.+|..|..-..++..=...+..+ ....|++ -..+..+-..+.
T Consensus 320 ~d~~~l~~~K~~ld~r~--s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~----- 390 (963)
T 4ady_A 320 IDIGLLNKSKSSLDGKF--SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNL----- 390 (963)
T ss_dssp CCHHHHHHHHHHSCTTS--HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCT-----
T ss_pred cchhhHHHHHhhhcchh--hHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCch-----
Confidence 33444556676676533 223 444445557778866555443322222212 2222332 223333322221
Q ss_pred chHHHHHHHHHhhcC---CCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCC--------hHHHHHHHHHHHHHhc
Q 002235 92 PEMILICQNLRNNLQ---HPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRH--------PYIRRNAILAVMAIYK 160 (949)
Q Consensus 92 ~e~iLv~NsL~KDL~---~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~--------pyVRk~A~lal~ki~~ 160 (949)
++ ....|.+-|- +.++++|+-|+-.||-+....-- .....+...|.+.+ +.||..|+++++-+|-
T Consensus 391 ~~---gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 391 LE---GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp TT---HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred HH---HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 22 2355566665 78899999999999988644321 22344444554443 8999999999999886
Q ss_pred CCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc----chhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcC
Q 002235 161 LPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC----DQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN 236 (949)
Q Consensus 161 l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i----~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~ 236 (949)
-..+ ++..+.+...| .+.+..+...|..+|..+ +.+++++.|.+.+.. ...++|..- +.--|+.+...+
T Consensus 467 --GS~~--eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-~~~e~vrR~-aalgLGll~~g~ 539 (963)
T 4ady_A 467 --GSAN--IEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-TQHGNITRG-LAVGLALINYGR 539 (963)
T ss_dssp --TCCC--HHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-CSCHHHHHH-HHHHHHHHTTTC
T ss_pred --CCCC--HHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-cCcHHHHHH-HHHHHHhhhCCC
Confidence 2211 23445565655 455555555565666655 444567766665432 234566444 333344444556
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHc--cC-CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh
Q 002235 237 KGEKGKYIKIIISLLNAPSTAVIYECAGTLVS--LS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI 313 (949)
Q Consensus 237 p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~--l~-~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~ 313 (949)
+.....+++.|. .+.++.|+|.++-++.- .. .++ .++..++..+.++++..+|-.|+-.|..+....|+.
T Consensus 540 ~e~~~~li~~L~---~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 540 QELADDLITKML---ASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence 666665555544 46889999999888742 22 234 355667777778888899999999999988778876
Q ss_pred HHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCc---
Q 002235 314 MVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFP--- 390 (949)
Q Consensus 314 l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~--- 390 (949)
+.+... .+..+.|+.||+-+.-.|..++..+.-..+++.|. .+. + |.+.++|+.++.+++.+...-+
T Consensus 613 v~rlv~---~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~-~L~---~---D~d~~Vrq~Ai~ALG~Ig~gtnna~ 682 (963)
T 4ady_A 613 VPRIVQ---LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD-PLT---K---DPVDFVRQAAMIALSMILIQQTEKL 682 (963)
T ss_dssp HHHHTT---TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH-HHH---T---CSSHHHHHHHHHHHHHHSTTCCTTT
T ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH-HHc---c---CCCHHHHHHHHHHHHHHhcCCcccc
Confidence 544321 23467899999998888887766555567777554 333 2 6789999999999999886433
Q ss_pred -ccHHHHHHHHHHHHhCCC
Q 002235 391 -EVASTVVHLLMDFLGDSN 408 (949)
Q Consensus 391 -~~~~~~l~~L~~lL~~~~ 408 (949)
+....++..|.++..+..
T Consensus 683 ~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 683 NPQVADINKNFLSVITNKH 701 (963)
T ss_dssp CTTHHHHHHHHHHHHHCSS
T ss_pred chHHHHHHHHHHHHHhccc
Confidence 346677777888777643
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.67 E-value=5.3e-07 Score=95.12 Aligned_cols=215 Identities=16% Similarity=0.200 Sum_probs=148.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCCc--hhh-----HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLNE--TEI-----IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD 170 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el-----~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~ 170 (949)
-+.+.+.|+++|+.+|-.|+++|+++.. ++. -...+|.+.+.|.+.++.||..|+.++..+.. .+++....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQA 91 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHH
Confidence 3778889999999999999998876443 221 12366888999999999999999999999987 55543221
Q ss_pred -----hHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHH
Q 002235 171 -----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIK 245 (949)
Q Consensus 171 -----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~ 245 (949)
..+.+-.+| .+.|+.++.+|+.+|..+..+.... +..++ ....++
T Consensus 92 i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~----------------~~~~~-------------~~~~i~ 141 (252)
T 4db8_A 92 VIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ----------------IQAVI-------------DAGALP 141 (252)
T ss_dssp HHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH----------------HHHHH-------------HTTHHH
T ss_pred HHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchH----------------HHHHH-------------HCCCHH
Confidence 234444544 6677888888888877765432111 00000 012346
Q ss_pred HHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH----
Q 002235 246 IIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV---- 315 (949)
Q Consensus 246 ~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~---- 315 (949)
.|..+|++.++.|+.+|+.++.++... +...+. +...+++++ .++++.++..++..|..|...+|...+
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 220 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE 220 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 677778888888999999999988753 322222 234556655 567889999999999988865554322
Q ss_pred -HHHHhheeccCCCCHHHHHHHHHHHHhhcC
Q 002235 316 -DLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 316 -~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
..+..+..++.+++..+|+.|...|..+++
T Consensus 221 ~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 221 AGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 134557778899999999999999998864
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.60 E-value=5.2e-06 Score=96.40 Aligned_cols=349 Identities=11% Similarity=0.095 Sum_probs=190.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCC--chhhH-----HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLN--ETEII-----EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD- 170 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~--~~el~-----~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~- 170 (949)
..+.+-|+++++.++..|..+|.++. ++..- ...+|.+.++|.+.++.+++.|+.|+..+.. .+++....
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~--~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 34455566778888888887777764 22222 2357888999999999999999999999987 54443221
Q ss_pred ----hHHHHHHHHccCCChhHHHHHHHHHHhcchh---------hHHHHHHHHHhh------cCc-------cChhHHHH
Q 002235 171 ----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---------RAINYLLTHVDR------VSE-------WGELLQMV 224 (949)
Q Consensus 171 ----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~---------~ai~~L~~~l~~------i~~-------~~p~~q~~ 224 (949)
..+.+-++|..+.++.++.+|..+|..+..+ .+++.|.+++.. -+. .++-.+..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 2344446663377899999999999887533 245556666521 000 22334456
Q ss_pred HHHHHHHhhhcCchhHH------HHHHHHHHHHcC------CchHHHHHHHHHHHccCCChH-----HHHHHHH------
Q 002235 225 VLELIRKVCRTNKGEKG------KYIKIIISLLNA------PSTAVIYECAGTLVSLSSAPT-----AIRAAAN------ 281 (949)
Q Consensus 225 il~ll~~~~~~~p~~~~------~li~~L~~lL~s------~s~aV~~Eaa~~l~~l~~~~~-----~l~~~a~------ 281 (949)
....|..++.. |..+. ..++.|..+|++ .+..++-.|+.++.+++...+ .......
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 77777777765 54433 345556666664 233344455555555431100 0000000
Q ss_pred ---HHHHHHccCCchHHHHHHHHHHH---------HH-HhhChhhHHHHHHhheeccC-CCCHHHHHHHHHHHHhhcCCC
Q 002235 282 ---TYSQLLLSQSDNNVKLIVLDRLN---------EL-RSSHRDIMVDLIMDVLRALN-SPNLDIRRKTLDIVLELITPR 347 (949)
Q Consensus 282 ---~li~lll~~~d~nvr~iaL~~L~---------~l-~~~~p~~l~~~~~~il~~L~-d~d~~Ir~~aL~lL~~l~~~~ 347 (949)
.....|-..+. .++-...+ +. .. .-.++.++.. ++.+|. .++..++..|.-.|..++...
T Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~----L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 242 TEKSSTGCFSNKSD-KMMNNNYD-CPLPEEETNPKGSGWLYHSDAIRT----YLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccchhhccch-hhhhcccc-CCccccccCchHHHHHhCcchHHH----HHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 00000000000 00000000 00 00 0012222222 222332 335667777777777766422
Q ss_pred c-----H-HH------HHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCccc----HHHHHHHHHHHHhCCCc--
Q 002235 348 N-----I-NE------VVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV----ASTVVHLLMDFLGDSNV-- 409 (949)
Q Consensus 348 N-----v-~~------Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~----~~~~l~~L~~lL~~~~~-- 409 (949)
. + .. .++.|.+ ... ..+.+.++.++.+|+.++. .++. ...++..|+++|.....
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~----LL~---~~~~~v~~~A~~aL~nls~-~~~~~~~i~~~~i~~Lv~lL~~~~~~~ 387 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIAR----LLQ---SGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGNT 387 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHH----HTT---CSCHHHHHHHHHHHHHHHT-SGGGHHHHHHHTHHHHHHTTTSCCSCS
T ss_pred CcchHHHHHHHHHHcCCchHHHH----HHh---CCCHhHHHHHHHHHHHHhc-CHHHHHHHHHhhhHHHHHhccCCCCCC
Confidence 1 1 11 2233332 222 2356777777777777764 2222 24567788888887543
Q ss_pred ----ccHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHhcccchHHHHHHHhhhcccCCCCC
Q 002235 410 ----ASAIDVIIFVREIIEMNPKLRV-----SIITRLLDNFYQIRAARVCTCALWIIGEYCQSL 464 (949)
Q Consensus 410 ----~v~~e~i~~l~~ii~~~p~~~~-----~~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~ 464 (949)
.+...++..+.+++...|+... .++.+|++.+.+-..+++++.+.|+|..|..+.
T Consensus 388 ~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 2344556677777776666433 478888888876436789999999999987544
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.53 E-value=2.9e-06 Score=89.39 Aligned_cols=209 Identities=17% Similarity=0.175 Sum_probs=133.1
Q ss_pred CCchhHHHHHhhcCCCCcchhHHHHHHHHH-HhhcCCCCCCCchHHH---HHHHHHhhcCCCCHHHHHHHHHHhhcCCc-
Q 002235 51 LPQLFITIVRYVLPSEDHTIQKLLLLYLEI-IDKTDAKGRVLPEMIL---ICQNLRNNLQHPNEYIRGVTLRFLCRLNE- 125 (949)
Q Consensus 51 ~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~-~~~~~~d~~l~~e~iL---v~NsL~KDL~~~N~~iR~~ALr~L~~I~~- 125 (949)
..+.|..+++ .+.++|...++-+--.+.. +.. ++.. -+.++ ++..|.+-|+++++.+|..|+++|+++..
T Consensus 10 ~~~~~~~~~~-~L~s~~~~~~~~a~~~L~~~l~~-~~~~---~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 10 HGSELPQMTQ-QLNSDDMQEQLSATRKFSQILSD-GNEQ---IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp TTCSHHHHHH-HHHSSCSSHHHHHHHHHHHHHHH-HHHH---HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHH-HHcCCCHHHHHHHHHHHHHHHcC-CCch---HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3456777777 4478888877766665533 322 1100 01122 55778888999999999999999999975
Q ss_pred -hhhHHH-----HHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc-----chHHHHHHHHccCCChhHHHHHHHH
Q 002235 126 -TEIIEP-----LIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-----DAPEMIEKVLSTEQDPSAKRNAFLM 194 (949)
Q Consensus 126 -~el~~~-----l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~-----~~~e~l~~~L~~d~d~~v~~~Al~~ 194 (949)
++..+. .++.+.+.+.+.++.||+.|+.++..+.. ..+.... ...+.+-.+| .+.|+.++..|+.+
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWA 161 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHH
Confidence 333322 67889999999999999999999999987 4443211 2334555655 77889999999999
Q ss_pred HHhcchhh-----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHH-----HHHHHHHHHcCCchHH
Q 002235 195 LFTCDQDR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-----YIKIIISLLNAPSTAV 258 (949)
Q Consensus 195 L~~i~~~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~-----li~~L~~lL~s~s~aV 258 (949)
|..+.... +++.|.+++ ...++..+...+..+..++..++..... .++.|..++++.++.|
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGG---GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHH
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHH---CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHH
Confidence 98886532 122222222 2345556666666666665544443322 3344555555556666
Q ss_pred HHHHHHHHHccC
Q 002235 259 IYECAGTLVSLS 270 (949)
Q Consensus 259 ~~Eaa~~l~~l~ 270 (949)
+.+|+.+|.++.
T Consensus 239 ~~~A~~~L~~l~ 250 (252)
T 4db8_A 239 QKEAQEALEKLQ 250 (252)
T ss_dssp HHTHHHHHHTTC
T ss_pred HHHHHHHHHHHh
Confidence 666666665553
No 54
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.48 E-value=0.00011 Score=87.12 Aligned_cols=326 Identities=13% Similarity=0.119 Sum_probs=203.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhhcCC--chh----hHH-HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCC-Cccc--
Q 002235 98 CQNLRNNLQHPNEYIRGVTLRFLCRLN--ETE----IIE-PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQ-GEQL-- 167 (949)
Q Consensus 98 ~NsL~KDL~~~N~~iR~~ALr~L~~I~--~~e----l~~-~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~-~~~l-- 167 (949)
+-.+.+-|.++++-++-.|..+|.++. +++ +++ ..+|.+.++|.+.++.|+..|+-|+..|.. . +++-
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~--~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF--GRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS--SSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc--cCCHHHHH
Confidence 355566778899988888877777764 222 222 257899999999999999999999999976 3 2322
Q ss_pred -ccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchhh---------HHHHHHHHHhh---------------cCccChh
Q 002235 168 -LVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR---------AINYLLTHVDR---------------VSEWGEL 220 (949)
Q Consensus 168 -i~~--~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~---------ai~~L~~~l~~---------------i~~~~p~ 220 (949)
+-+ ..+.+-.+|....+..++.+|..+|..+...+ +++.|++++.. ....++-
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 111 23344455644578889999999998875332 34556554410 0112456
Q ss_pred HHHHHHHHHHHhhhcCchhHHHH------HHHHHHHHcC------CchHHHHHHHHHHHccCCCh---------------
Q 002235 221 LQMVVLELIRKVCRTNKGEKGKY------IKIIISLLNA------PSTAVIYECAGTLVSLSSAP--------------- 273 (949)
Q Consensus 221 ~q~~il~ll~~~~~~~p~~~~~l------i~~L~~lL~s------~s~aV~~Eaa~~l~~l~~~~--------------- 273 (949)
.+......|+.++..++..+..+ ++.|..+|++ .+...+-.|+.+|.+|+..-
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 67888888888887665544433 3456666653 34567777888876654210
Q ss_pred -----------HHH-----HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhC-h--h----hH--HHHHHhheeccCCC
Q 002235 274 -----------TAI-----RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH-R--D----IM--VDLIMDVLRALNSP 328 (949)
Q Consensus 274 -----------~~l-----~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~-p--~----~l--~~~~~~il~~L~d~ 328 (949)
..+ -.++..|+.+|..+.++.++-.|...|..|.... + . .+ ..-+..+..+|.++
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 000 0234567788866677899999999998886422 1 1 22 23355677788888
Q ss_pred CHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCC
Q 002235 329 NLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSN 408 (949)
Q Consensus 329 d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~ 408 (949)
+..+++.|...|..|+...+...++. + ..+.-|+.+|..+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~~~~~I~---~------------------------------------g~ip~LV~LL~~~~ 408 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDARNKELIG---K------------------------------------HAIPNLVKNLPGGQ 408 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCHHHHH---H------------------------------------HHHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHHHhCChhHHHHHH---h------------------------------------CCHHHHHHHhcCCc
Confidence 99999999998888776544333321 0 12333444444331
Q ss_pred --------cccHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHhccc-chHHHHHHHhhhcccCCCCC
Q 002235 409 --------VASAIDVIIFVREIIEMNPKLRV-----SIITRLLDNFYQI-RAARVCTCALWIIGEYCQSL 464 (949)
Q Consensus 409 --------~~v~~e~i~~l~~ii~~~p~~~~-----~~l~~L~~~l~~i-~~~~v~~~~lwiLGEy~~~~ 464 (949)
..+...++..+.+|+...|+.+. .++..|+..+.+- ..+.+.+.+.|+|.......
T Consensus 409 ~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 409 QNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp CSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 22344455555555554444433 3577788877653 35678888888888776643
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.48 E-value=0.00011 Score=87.09 Aligned_cols=173 Identities=15% Similarity=0.169 Sum_probs=110.4
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccc-----hHHHHHHHHccCCChhHHHHHHHHHHhcchh---
Q 002235 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVD-----APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--- 201 (949)
Q Consensus 130 ~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~-----~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~--- 201 (949)
++-+|.+.+.|.+.++-++..|+.++.++.. .+++.... ..+.+-.+| ...++.++.+|..+|..+...
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~--~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCY--RNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCH
Confidence 3346777889999999999999999999886 45432211 233444555 778999999999999988642
Q ss_pred h---------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHH----HHHHHHHH-----------------
Q 002235 202 R---------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKY----IKIIISLL----------------- 251 (949)
Q Consensus 202 ~---------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~l----i~~L~~lL----------------- 251 (949)
+ +++.|++++..- .++-.|..+...|..++. ++..+..+ +..|..+|
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKA--RDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC--CSHHHHHHHHHHHHHHTT-SGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred HHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHhC-CchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 1 466777777632 345567777777777765 33333222 34555544
Q ss_pred -cCCchHHHHHHHHHHHccCCChHHHHH-------HHHHHHHHHcc-----CCchHHHHHHHHHHHHHHh
Q 002235 252 -NAPSTAVIYECAGTLVSLSSAPTAIRA-------AANTYSQLLLS-----QSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 252 -~s~s~aV~~Eaa~~l~~l~~~~~~l~~-------~a~~li~lll~-----~~d~nvr~iaL~~L~~l~~ 308 (949)
.+.++.|+..|+.+|.+++...+..+. ++.+++.++.+ .++....--++..|..|..
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 122468999999999999865322121 23366666642 2344555556666655553
No 56
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.42 E-value=5.1e-05 Score=87.78 Aligned_cols=292 Identities=13% Similarity=0.101 Sum_probs=172.7
Q ss_pred HHHHHHHhccCC------------ChHHHHHHHHHHHHHhcCCCCcccccc-----hHHHHH----------HHHccC--
Q 002235 132 LIPSVLQNLQHR------------HPYIRRNAILAVMAIYKLPQGEQLLVD-----APEMIE----------KVLSTE-- 182 (949)
Q Consensus 132 l~~~I~~~L~d~------------~pyVRk~A~lal~ki~~l~~~~~li~~-----~~e~l~----------~~L~~d-- 182 (949)
.+|.+.++|.+. ++-+|..|+-|+..|.. ..|+.... ...+++ ++|...
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH--SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH--HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc--cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 567777777653 37999999999999998 77765432 111111 222111
Q ss_pred -CC--h-hH-------HHHHHHHHHhcchhh----------HHHHHHHHHhh--------cCccChhHHHHHHHHHHHhh
Q 002235 183 -QD--P-SA-------KRNAFLMLFTCDQDR----------AINYLLTHVDR--------VSEWGELLQMVVLELIRKVC 233 (949)
Q Consensus 183 -~d--~-~v-------~~~Al~~L~~i~~~~----------ai~~L~~~l~~--------i~~~~p~~q~~il~ll~~~~ 233 (949)
.| . .| +.+|+.+|..+.-+. +++.|..++.. ....++-+|......|..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 0 13 237888888775321 35667766641 01123557888999999999
Q ss_pred hcCchhH------HHHHHHHHHHHcCCchHHHHHHHHHHHccCCC--hH---HHH--HHHHHHHHHHccCCchHHHHHHH
Q 002235 234 RTNKGEK------GKYIKIIISLLNAPSTAVIYECAGTLVSLSSA--PT---AIR--AAANTYSQLLLSQSDNNVKLIVL 300 (949)
Q Consensus 234 ~~~p~~~------~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~---~l~--~~a~~li~lll~~~d~nvr~iaL 300 (949)
..++..+ .-.++.|..+|++.++.|+..|+.+|.+++.. +. .+. .++..++++|..++++.++-.++
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 8765333 23478999999999999999999999999752 32 121 13567888887777889999988
Q ss_pred HHHHHHHhhCh----hhH--HHHHHhheeccCCCCH----HHHHHHHHHHHhhc-----CCCcHHHHHHH-HHHHHHHhc
Q 002235 301 DRLNELRSSHR----DIM--VDLIMDVLRALNSPNL----DIRRKTLDIVLELI-----TPRNINEVVLM-LKKEVVKTQ 364 (949)
Q Consensus 301 ~~L~~l~~~~p----~~l--~~~~~~il~~L~d~d~----~Ir~~aL~lL~~l~-----~~~Nv~~Iv~~-L~kel~~~~ 364 (949)
..|..|+...+ .+. ...+..+..+|.+++. .++..|.-+|..++ ++.|...+++. ....+....
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 88888876332 222 1234445556665443 48888887777665 34444333210 001111122
Q ss_pred cCCccCCHHHHHHHHHHHHHhHccCcccH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcc
Q 002235 365 SGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK 428 (949)
Q Consensus 365 ~~~~d~~~e~r~~lv~aI~~la~kf~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~ 428 (949)
. ..+.+.+..++.+|+.++...+... ...++.|+++|......+...+..+|+++....|.
T Consensus 389 ~---~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 389 K---SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp S---CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred c---CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 1 2244566666666666664333221 23345555555554444555555566665555544
No 57
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.41 E-value=1.5e-05 Score=78.49 Aligned_cols=197 Identities=11% Similarity=0.189 Sum_probs=138.2
Q ss_pred cCCChhHHHHHHHHHHhcchhh------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCC
Q 002235 181 TEQDPSAKRNAFLMLFTCDQDR------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAP 254 (949)
Q Consensus 181 ~d~d~~v~~~Al~~L~~i~~~~------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~ 254 (949)
.|.-..|+.||+..+..+.... .+..|..+++. +..=|. ...|-+.++.+++..|+....+++.+..-++-.
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k-sEaIpl-tqeIa~a~G~la~i~Pe~v~~vVp~lfanyrig 119 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-SEAIPL-TQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG 119 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-CCSHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-cccCch-HHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcC
Confidence 5555567777777766654321 13334333332 122233 244566677777777887777788777777777
Q ss_pred chHHHHHHHHHHHccC-CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHH
Q 002235 255 STAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIR 333 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~-~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir 333 (949)
.+-+...-+.++-.+. .+|+.+...+.-+..++ +++|..=|.+||.-+..+...++..+.|+...++.+|.|.|.-+|
T Consensus 120 d~kikIn~~yaLeeIaranP~l~~~v~rdi~sml-tskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-SCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH
T ss_pred CccceecHHHHHHHHHHhChHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh
Confidence 7666666666665553 35777777777776665 688888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCc-HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHc
Q 002235 334 RKTLDIVLELITPRN-INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI 387 (949)
Q Consensus 334 ~~aL~lL~~l~~~~N-v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~ 387 (949)
.-|.++|..++..+- +..++..-. ..+ + |.++.+...+..+++.+..
T Consensus 199 aSaVEtL~~lA~~npklRkii~~kl---~e~-~---D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 199 ASAVEALVHLATLNDKLRKVVIKRL---EEL-N---DTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH---HHC-C---CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHH---HHh-c---CcHHHHHHHHHHHHHHHHH
Confidence 999999998875331 555554333 333 2 5677888889999987763
No 58
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.41 E-value=3.3e-06 Score=86.67 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=136.5
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHhcchh--hH--HHHHHHHHhh----cCccChhHHHHHHHHHHHhhhc---CchhH
Q 002235 172 PEMIEKVLSTEQDPSAKRNAFLMLFTCDQD--RA--INYLLTHVDR----VSEWGELLQMVVLELIRKVCRT---NKGEK 240 (949)
Q Consensus 172 ~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~--~a--i~~L~~~l~~----i~~~~p~~q~~il~ll~~~~~~---~p~~~ 240 (949)
..++..+| .|.|+.++.+|+.+|.++-.. +. ...+-+.++. ..+.++-.-+..+++++.+... .|..-
T Consensus 35 l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 35 LFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34566655 899999999999999987654 21 2223333332 3467788888899999887654 45667
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh--ChhhHHHHH
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS--HRDIMVDLI 318 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~--~p~~l~~~~ 318 (949)
.++.+.+..++.+.+.....|||..+..+.... ..+.+..-+.+++ ++.|+.+|-+|++.+..++.+ +|+.+.+-.
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~ 191 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLIL 191 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTT
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 788899999999999999999999999985321 1233444455555 899999999999999999875 567777766
Q ss_pred HhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 002235 319 MDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLK 357 (949)
Q Consensus 319 ~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~ 357 (949)
..+-.+|+++|++++.+||+.+..+.+..=.++++..+.
T Consensus 192 ~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~ 230 (265)
T 3b2a_A 192 DEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL 230 (265)
T ss_dssp TTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH
Confidence 667777899999999999999999888654444444443
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.31 E-value=0.0003 Score=81.46 Aligned_cols=320 Identities=12% Similarity=0.075 Sum_probs=210.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCC-------CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCC
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETL-------PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRV 90 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~-------s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l 90 (949)
++..+-+.|.+++...+..+...|-.+. .+.+- ..+.+..++ ++.+++..+++-+--.+..++..+++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~-~~~~~~~~~i~~~g~i~~Lv~-lL~s~~~~~~~~A~~aL~nLa~~~~~~-- 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVD-LLRSPNQNVQQAAAGALRNLVFRSTTN-- 78 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHT-SSCSSHHHHHHHTTHHHHHHH-HTTSSCHHHHHHHHHHHHHHHSSCHHH--
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHH-cCChHHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhcCCHHH--
Confidence 4667788999999888888887665544 44332 356788888 558888889888877777776432211
Q ss_pred CchHHH---HHHHHHhhcC-CCCHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhcc--------C--------CCh
Q 002235 91 LPEMIL---ICQNLRNNLQ-HPNEYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQ--------H--------RHP 145 (949)
Q Consensus 91 ~~e~iL---v~NsL~KDL~-~~N~~iR~~ALr~L~~I~~-----~el~~~l~~~I~~~L~--------d--------~~p 145 (949)
-..+. ++..|.+=|. ++++-++-.|..+|+++.. ..+++..+|.+.+++. + .++
T Consensus 79 -k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 79 -KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp -HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred -HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 01122 2457777787 8899999999888877743 2244567788888882 2 357
Q ss_pred HHHHHHHHHHHHHhcCCCCcccc---c---chHHHHHHHHcc-----CCChhHHHHHHHHHHhcchh-------------
Q 002235 146 YIRRNAILAVMAIYKLPQGEQLL---V---DAPEMIEKVLST-----EQDPSAKRNAFLMLFTCDQD------------- 201 (949)
Q Consensus 146 yVRk~A~lal~ki~~l~~~~~li---~---~~~e~l~~~L~~-----d~d~~v~~~Al~~L~~i~~~------------- 201 (949)
.|.++|+-++..+.. . |+.. . ...+.+-.+|.. +.|..++.+|+.+|..+...
T Consensus 158 ~v~~~a~~aL~nLs~--~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 158 EVFFNATGCLRNLSS--A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp HHHHHHHHHHHHHTT--S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcc--C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 788899999999987 4 4322 1 223333333421 24556677777766654310
Q ss_pred ------------------------------------------------hHHHHHHHHHhhcCccChhHHHHHHHHHHHhh
Q 002235 202 ------------------------------------------------RAINYLLTHVDRVSEWGELLQMVVLELIRKVC 233 (949)
Q Consensus 202 ------------------------------------------------~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~ 233 (949)
.+++.|..++.. ..+|-.+......+..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLT 312 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhc
Confidence 012333344332 234666777778888887
Q ss_pred hcCchh---H-------HHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH---H-HHHHHHHHHHHccCCc------h
Q 002235 234 RTNKGE---K-------GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA---I-RAAANTYSQLLLSQSD------N 293 (949)
Q Consensus 234 ~~~p~~---~-------~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~---l-~~~a~~li~lll~~~d------~ 293 (949)
..+... . ...++.|..+|++.+..|+.+|+.+|.+++.+++. + +.+..+++++|. .++ .
T Consensus 313 ~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~-~~~~~~~~~~ 391 (457)
T 1xm9_A 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLT-SHTGNTSNSE 391 (457)
T ss_dssp TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTT-SCCSCSTTHH
T ss_pred cCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhcc-CCCCCCCCcH
Confidence 654221 1 23467899999999999999999999999765421 2 234567777774 333 3
Q ss_pred HHHHHHHHHHHHHHhhChhhHH-----HHHHhheeccCCC-CHHHHHHHHHHHHhhcCCCc
Q 002235 294 NVKLIVLDRLNELRSSHRDIMV-----DLIMDVLRALNSP-NLDIRRKTLDIVLELITPRN 348 (949)
Q Consensus 294 nvr~iaL~~L~~l~~~~p~~l~-----~~~~~il~~L~d~-d~~Ir~~aL~lL~~l~~~~N 348 (949)
.+...++..|..+....+.... .-+..+..++.++ +..|+++|..+|..+...+.
T Consensus 392 ~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 6888999999998876654321 2345567778888 89999999999998876543
No 60
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.24 E-value=5.5e-07 Score=85.86 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=82.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 97 ICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 97 v~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
..+.+.+.|+|+|+.+|..|++.|+++..+. .+.+.+++.|++|.||..|+.++.++.. + ...+.+.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~----~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD----E----RAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----HHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----H----HHHHHHH
Confidence 3467788899999999999999999998875 3667788999999999999999988744 2 2334444
Q ss_pred HHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHH
Q 002235 177 KVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIR 230 (949)
Q Consensus 177 ~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~ 230 (949)
.+| .|.|+.|+..|+.+|..+....++..|...++ ..+++.+..+++.|.
T Consensus 80 ~~L-~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~---d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 80 KLL-EDDSGFVRSGAARSLEQIGGERVRAAMEKLAE---TGTGFARKVAVNYLE 129 (131)
T ss_dssp HHH-HHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTT---SCCTHHHHHHHHHGG
T ss_pred HHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 555 78899999999999988876666666666553 455666666655543
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.23 E-value=0.00025 Score=87.44 Aligned_cols=304 Identities=11% Similarity=0.042 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCC--
Q 002235 109 NEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQ---HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQ-- 183 (949)
Q Consensus 109 N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~---d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~-- 183 (949)
.++-+..|+-+||-|.-...-+ ....+.+.|. +.++|+|.-|+++++-++. ...+ +..+++...|.+++
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~~~-gl~~L~~yL~~~~s~~~~ik~GAllaLGli~a--g~~~---~~~~lL~~~L~~~~~~ 444 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNLLE-GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYA--GFGR---DTTDYLKNIIVENSGT 444 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCTTT-HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTT--TTTH---HHHHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHhhhhccCchHH-HHHHHHHhccccCCCcHHHHHHHHHHHHHhcC--CCcH---HHHHHHHHHHcCcccc
Confidence 4456778888888776544322 2445556665 6789999999999999887 3332 23455555553333
Q ss_pred -----ChhHHHHHHHHHHhcc----hhhHHHHHHHHHhhcCccChhHHHHHHHHHHHh--hhcCchhHHHHHHHHHHHHc
Q 002235 184 -----DPSAKRNAFLMLFTCD----QDRAINYLLTHVDRVSEWGELLQMVVLELIRKV--CRTNKGEKGKYIKIIISLLN 252 (949)
Q Consensus 184 -----d~~v~~~Al~~L~~i~----~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~--~~~~p~~~~~li~~L~~lL~ 252 (949)
++.++..|+..|.-+. .++++..|..++.+ .++.......-.++.. ...+....+.++..+ ..
T Consensus 445 ~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e 518 (963)
T 4ady_A 445 SGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QE 518 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HH
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hc
Confidence 2566666766777652 33456777666642 1221111111122222 223433334343333 33
Q ss_pred CCchHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHH--HHhhChhhHHHHHHhheeccCCCC
Q 002235 253 APSTAVIYECAGTLVSLSS-APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNE--LRSSHRDIMVDLIMDVLRALNSPN 329 (949)
Q Consensus 253 s~s~aV~~Eaa~~l~~l~~-~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~--l~~~~p~~l~~~~~~il~~L~d~d 329 (949)
..+..|+..++-.|..+.. .+ ..+..+++.|..+.+|.+||.+.-.+.- ...-++..++.... .|.+|++
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~----e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~~ 591 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQ----ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDSN 591 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCG----GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSC
T ss_pred cCcHHHHHHHHHHHHhhhCCCh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCCc
Confidence 4566788778887765532 23 2455667777778889999987766542 22235555555322 2456778
Q ss_pred HHHHHHHHHHHHh--hcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCC
Q 002235 330 LDIRRKTLDIVLE--LITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDS 407 (949)
Q Consensus 330 ~~Ir~~aL~lL~~--l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~ 407 (949)
..||+.|+--|.. +++++.+.+++..|. . ..++..|+.+.-|+|.++.--|. ..+++.|..++.|.
T Consensus 592 d~VRraAViaLGlI~~g~~e~v~rlv~~L~----~------~~d~~VR~gAalALGli~aGn~~--~~aid~L~~L~~D~ 659 (963)
T 4ady_A 592 DDVRRAAVIALGFVLLRDYTTVPRIVQLLS----K------SHNAHVRCGTAFALGIACAGKGL--QSAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSHHHHTTTGG----G------CSCHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHH----h------cCCHHHHHHHHHHHHHhccCCCc--HHHHHHHHHHccCC
Confidence 8899888777765 456777777665333 2 23688999999999988754443 57888999999999
Q ss_pred CcccHHHHHHHHHHHHHhCccc---H-HHHHHHHHHHhcc
Q 002235 408 NVASAIDVIIFVREIIEMNPKL---R-VSIITRLLDNFYQ 443 (949)
Q Consensus 408 ~~~v~~e~i~~l~~ii~~~p~~---~-~~~l~~L~~~l~~ 443 (949)
..+++..++.++..|....++. | ...+.+|...+.+
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 9999999999999887765554 3 4456667776654
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.21 E-value=3.2e-05 Score=78.97 Aligned_cols=176 Identities=19% Similarity=0.288 Sum_probs=111.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhHH-----HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc--
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE--TEIIE-----PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV-- 169 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~~-----~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~-- 169 (949)
..|.+=|+|+++.+|..|+++|+++.. ++..+ ..+|.+.++|.+.++.||..|+.++..+.. ..++...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i 92 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAV 92 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 456667889999999999999999863 33322 367889999999999999999999999986 4544322
Q ss_pred ---chHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHH
Q 002235 170 ---DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKI 246 (949)
Q Consensus 170 ---~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~ 246 (949)
...+.+-.+| .+.|+.++..|+.+|..+.....-. . ..++ ....++.
T Consensus 93 ~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-~---------------~~~~-------------~~~~i~~ 142 (210)
T 4db6_A 93 IDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-I---------------QAVI-------------DAGALPA 142 (210)
T ss_dssp HHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH-H---------------HHHH-------------HTTHHHH
T ss_pred HHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHH-H---------------HHHH-------------HcCcHHH
Confidence 1234444544 7778888888888888776432100 0 0000 0123455
Q ss_pred HHHHHcCCchHHHHHHHHHHHccCCC-hHHHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 002235 247 IISLLNAPSTAVIYECAGTLVSLSSA-PTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELR 307 (949)
Q Consensus 247 L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~ 307 (949)
|..+|++.++.|+..|+.+|.++... +...+. +...+++++ .++++.+|..++..|..|+
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHh
Confidence 55666666666777777777666443 222111 223444433 5667777777777776664
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.20 E-value=3.9e-05 Score=78.28 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHccCC-ChHHHHH-----HHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH-
Q 002235 243 YIKIIISLLNAPSTAVIYECAGTLVSLSS-APTAIRA-----AANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV- 315 (949)
Q Consensus 243 li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~~l~~-----~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~- 315 (949)
....|..+|++.++.|+.+|+++|.++.. .+...+. +...++++| .++++.++..++..|..|+..++....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 45788889999999999999999998874 3322221 344566655 677889999999999999865543211
Q ss_pred ----HHHHhheeccCCCCHHHHHHHHHHHHhhcC
Q 002235 316 ----DLIMDVLRALNSPNLDIRRKTLDIVLELIT 345 (949)
Q Consensus 316 ----~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~ 345 (949)
..+..++.+|.+++..+|..++..|..++.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc
Confidence 234557778899999999999999998874
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=2.5e-05 Score=82.20 Aligned_cols=184 Identities=11% Similarity=0.176 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccccc----chHHHHHHHHccCCChhHHHHHHHHHHhcchhh
Q 002235 127 EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLV----DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 127 el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~----~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
++...+-+.+.+.+.|++..+|+.|+.++..+.. ..|.+.. ++.+.+.+.|.+|+|+.|+..|+.+|..+...
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~--~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~- 87 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLT--DHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG- 87 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHH--HCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHc--cCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-
Confidence 3444455567788899999999999999999988 5444332 33445555453489999999998887665532
Q ss_pred HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHH
Q 002235 203 AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANT 282 (949)
Q Consensus 203 ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~ 282 (949)
+. ..+.+ ....+++.|...+..+++.|+..|+.++..+..... +..+...
T Consensus 88 --------l~--~~~~~-------------------~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~ll~~ 137 (242)
T 2qk2_A 88 --------LA--KRFSN-------------------YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEAQQES 137 (242)
T ss_dssp --------HG--GGGHH-------------------HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred --------Hh--hhHHH-------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 11 01111 223456777777888888888888887776643221 3345555
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHhhC-hh-----hHHHHHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 283 YSQLLLSQSDNNVKLIVLDRLNELRSSH-RD-----IMVDLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 283 li~lll~~~d~nvr~iaL~~L~~l~~~~-p~-----~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
+...+ .++++.+|..++..|..+...+ |. .+......+..++.|++..||..|.+.+..++
T Consensus 138 l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 138 IVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 55554 6788999999999999976654 43 23445566778899999999999999888654
No 65
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.15 E-value=0.00019 Score=90.88 Aligned_cols=386 Identities=11% Similarity=0.076 Sum_probs=196.4
Q ss_pred cCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHH
Q 002235 63 LPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPS 135 (949)
Q Consensus 63 ~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~-------~~el~~~l~~~ 135 (949)
+.+.|...|+-+.-++..+.+. |+....+-.|.. .+.++.+|-.|+..|-+.. .++-.+.+-..
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~~~-------p~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 104 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQVS-------PQAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQ 104 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHS-------TTHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhcC-------HHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHH
Confidence 3456777787787777776432 344333333432 3567788877777776532 22233333444
Q ss_pred HHHhccC---CChHHHHHHHHHHHHHhcCCCCcccccchHHHHHH---HHccC-----CChhHHHHHHHHHHhcchh---
Q 002235 136 VLQNLQH---RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK---VLSTE-----QDPSAKRNAFLMLFTCDQD--- 201 (949)
Q Consensus 136 I~~~L~d---~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~---~L~~d-----~d~~v~~~Al~~L~~i~~~--- 201 (949)
+.+.+.+ ..++||.+.+.++..|.+. -.|+ +|++.+.. ++ .. .++.....++..|..+..+
T Consensus 105 ll~~l~~~~~~~~~ir~kl~~~la~i~~~-~~p~---~Wp~~l~~l~~~~-~~~~~~~~~~~~~~~~l~iL~~l~ee~~~ 179 (963)
T 2x19_B 105 LFTQITRFASGSKIVLTRLCVALASLALS-MMPD---AWPCAVADMVRLF-QAEDSPVDGQGRCLALLELLTVLPEEFQT 179 (963)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHH-HTTT---TSTTHHHHHHHHH-CC------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hCcc---ccchHHHHHHHHH-hhhccCCCcHHHHHHHHHHHHhCHHHHhc
Confidence 4444433 3699999999999999883 2343 35444333 33 22 2444555666555543321
Q ss_pred ----------------hHHHHHHHHHhhc---CccChhHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHcCCchHHHH
Q 002235 202 ----------------RAINYLLTHVDRV---SEWGELLQMVVLELIRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIY 260 (949)
Q Consensus 202 ----------------~ai~~L~~~l~~i---~~~~p~~q~~il~ll~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~ 260 (949)
...+.+..++.++ ...+.|....+++.+..+.+.... ....+++.+.+++. ++.++.
T Consensus 180 ~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~ 257 (963)
T 2x19_B 180 SRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFD 257 (963)
T ss_dssp CCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHH
Confidence 0122233333221 111236777788887665543222 22566777777764 344555
Q ss_pred HHHHHHHccCC---Ch---HHHHHHHHHHHHH------HccCCchHHHHHHHHHHHHHHhhChhhH----------HHHH
Q 002235 261 ECAGTLVSLSS---AP---TAIRAAANTYSQL------LLSQSDNNVKLIVLDRLNELRSSHRDIM----------VDLI 318 (949)
Q Consensus 261 Eaa~~l~~l~~---~~---~~l~~~a~~li~l------ll~~~d~nvr~iaL~~L~~l~~~~p~~l----------~~~~ 318 (949)
.|+.++..+-. .+ ..+......++.. .....|....-...+.+..+...++..+ ....
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHH
Confidence 55555554422 11 1222222222211 0122344333333455555555444433 2333
Q ss_pred HhheeccCC-----CCHHHHHHHHHHHHhhcCC-----------------CcHHHHHHHHHHHHHHhccCC----ccCC-
Q 002235 319 MDVLRALNS-----PNLDIRRKTLDIVLELITP-----------------RNINEVVLMLKKEVVKTQSGE----LEKN- 371 (949)
Q Consensus 319 ~~il~~L~d-----~d~~Ir~~aL~lL~~l~~~-----------------~Nv~~Iv~~L~kel~~~~~~~----~d~~- 371 (949)
..++.+..+ .+..++..+++....++.. .-+..++..+...+. +.+.+ .+.+
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~-~p~~~~~~~~~~de 416 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQ-FPSDEEYGFWSSDE 416 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHTSCHHH
T ss_pred HHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccCCChhH
Confidence 334444443 3556787888777766541 112223333332221 11100 0001
Q ss_pred ----HHHHHHHHHHHHHhHccCcc-cHHHHHHHHHHHHh---CCCc-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhc
Q 002235 372 ----GEYRQMLIQAIHSCAIKFPE-VASTVVHLLMDFLG---DSNV-ASAIDVIIFVREIIEMNPKLRVSIITRLLDNFY 442 (949)
Q Consensus 372 ----~e~r~~lv~aI~~la~kf~~-~~~~~l~~L~~lL~---~~~~-~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~ 442 (949)
.+||+.+.+.+..++..++. ....+++.+...+. ...+ ...+.++..+..+.+..++.....+..++..+.
T Consensus 417 ~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~ 496 (963)
T 2x19_B 417 KEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP 496 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 24678888888888876653 33445555555552 1112 233345677777766543322234555666554
Q ss_pred cc--chHHHHHHHhhhcccCCCCCC
Q 002235 443 QI--RAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 443 ~i--~~~~v~~~~lwiLGEy~~~~~ 465 (949)
.. .++.++..++|++|.|+....
T Consensus 497 ~l~~~~~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 497 RISISNVQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp GSCCCSHHHHHHHHHHHHHTHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 43 367899999999999987654
No 66
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.12 E-value=0.00022 Score=90.47 Aligned_cols=386 Identities=12% Similarity=0.120 Sum_probs=197.0
Q ss_pred CCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHHH
Q 002235 65 SEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSVL 137 (949)
Q Consensus 65 s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~-------~~el~~~l~~~I~ 137 (949)
+.|...|+-+.-++..+.+. |+..-.+-.+.. .++++.+|-.|+..|-+.. .++-.+.+-..+.
T Consensus 18 ~~d~~~r~~A~~~L~~~~~~-------p~~w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 88 (971)
T 2x1g_F 18 RSNSQNQAITHEWLTDAEAS-------PQAWQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88 (971)
T ss_dssp TSTTTC----CHHHHHTTTS-------THHHHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-------HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHH
Confidence 45666777777777776322 454433333331 2567888888877776532 2233334444444
Q ss_pred HhccC---CChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHc--cCC------ChhHHHHHHHHHHhcchh-----
Q 002235 138 QNLQH---RHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS--TEQ------DPSAKRNAFLMLFTCDQD----- 201 (949)
Q Consensus 138 ~~L~d---~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~--~d~------d~~v~~~Al~~L~~i~~~----- 201 (949)
+.+.+ ..++||.+...++..|.+. ..| .|++.+..++. ... ++.....++..|..+..+
T Consensus 89 ~~l~~~~~~~~~vr~kl~~~la~i~~~-~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 89 ESIVRFAGGPKIVLNRLCISLGAYIVH-MLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHH-TTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHH-ccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 44432 3689999999999999983 233 57655544321 221 345555666666544322
Q ss_pred ---------hH----HHHHHH----HHhhcCccC----h-hHHHHHHHHHHHhhh--cCch-hHHHHHHHHHHHHc----
Q 002235 202 ---------RA----INYLLT----HVDRVSEWG----E-LLQMVVLELIRKVCR--TNKG-EKGKYIKIIISLLN---- 252 (949)
Q Consensus 202 ---------~a----i~~L~~----~l~~i~~~~----p-~~q~~il~ll~~~~~--~~p~-~~~~li~~L~~lL~---- 252 (949)
+. .+.+.. .+......+ . -....+++.+..+.. .-|. ....+++.+.. |.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~ 242 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCY 242 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhc
Confidence 00 122222 222211110 0 246677777776554 2221 33456665555 41
Q ss_pred ------------CCchHHHHHHHHHHHccCC--C----hHHHHHHHHHHHHH---H---ccCCch---HHHHHHHHHHHH
Q 002235 253 ------------APSTAVIYECAGTLVSLSS--A----PTAIRAAANTYSQL---L---LSQSDN---NVKLIVLDRLNE 305 (949)
Q Consensus 253 ------------s~s~aV~~Eaa~~l~~l~~--~----~~~l~~~a~~li~l---l---l~~~d~---nvr~iaL~~L~~ 305 (949)
..++.++-.|+.++..+-. . ...+..+...++++ + ....|. .......+.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~ 322 (971)
T 2x1g_F 243 WPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVS 322 (971)
T ss_dssp SSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHH
T ss_pred cccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 1345566677777766532 1 12333333333321 1 134453 666667777777
Q ss_pred HHhhChhhHH---------------HHHHhheeccC-----CCCHHHHHHHHHHHHhhcC----------CCcH----HH
Q 002235 306 LRSSHRDIMV---------------DLIMDVLRALN-----SPNLDIRRKTLDIVLELIT----------PRNI----NE 351 (949)
Q Consensus 306 l~~~~p~~l~---------------~~~~~il~~L~-----d~d~~Ir~~aL~lL~~l~~----------~~Nv----~~ 351 (949)
+...++..+. .++..++.+.. ..+..|+..+++....++. .... ..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (971)
T 2x1g_F 323 SVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKP 402 (971)
T ss_dssp HHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 7766665443 23333444432 2467799999988766543 1111 22
Q ss_pred HHHHHHHHHHHhccCCccC-----C-------HHHHHHHHHHHHHhHccCc-ccHHHHHHHHHHHHhC----CCc-ccHH
Q 002235 352 VVLMLKKEVVKTQSGELEK-----N-------GEYRQMLIQAIHSCAIKFP-EVASTVVHLLMDFLGD----SNV-ASAI 413 (949)
Q Consensus 352 Iv~~L~kel~~~~~~~~d~-----~-------~e~r~~lv~aI~~la~kf~-~~~~~~l~~L~~lL~~----~~~-~v~~ 413 (949)
++..|...+...+....+. + .+||+.+...+..++..++ ...+.+++.+...+.. ..+ ...+
T Consensus 403 ~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~e 482 (971)
T 2x1g_F 403 LYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLE 482 (971)
T ss_dssp HHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 3333332222222110010 1 2588999999999998887 3334555555555543 122 2344
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHhcccc----hHHHHHHHhhhcccCCCCCC
Q 002235 414 DVIIFVREIIEMNPKLRVSIITRLLDNFYQIR----AARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 414 e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~----~~~v~~~~lwiLGEy~~~~~ 465 (949)
.++..+..+.+..++.....+..+++.+..+. ++.++..++|++|.|++...
T Consensus 483 aal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~ 538 (971)
T 2x1g_F 483 ACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLM 538 (971)
T ss_dssp HHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHh
Confidence 45677777765433322234555555543322 67899999999999987654
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00033 Score=84.74 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccch------HHHHHHH
Q 002235 110 EYIRGVTLRFLCRLNE-----TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDA------PEMIEKV 178 (949)
Q Consensus 110 ~~iR~~ALr~L~~I~~-----~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~------~e~l~~~ 178 (949)
+.+|..|+-.||+++. ..-+..+.+.+++.+.+...-.|+-|+-++.-+-. +|+.-+.+ .+.+-++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl---~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL---KASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT---SSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC---CHHHHHHHHhCHHHHHHHHHH
Confidence 5677788888877652 23344567777777776554457778777776543 34332211 2223333
Q ss_pred HccCCChhHHHHHHHHHHhcchhh--------HHHHHHH----------------------------H----------Hh
Q 002235 179 LSTEQDPSAKRNAFLMLFTCDQDR--------AINYLLT----------------------------H----------VD 212 (949)
Q Consensus 179 L~~d~d~~v~~~Al~~L~~i~~~~--------ai~~L~~----------------------------~----------l~ 212 (949)
+....|..+.+.|+..|..+.... .+.+|.+ . ..
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR 464 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence 422356778888888887763210 0111100 0 00
Q ss_pred hcCccChhHHHHHHHHHHHhhhcCchhHHHH-----HHHHHHHHcCCchH---HHHHHHHHHHccC--CChHHH------
Q 002235 213 RVSEWGELLQMVVLELIRKVCRTNKGEKGKY-----IKIIISLLNAPSTA---VIYECAGTLVSLS--SAPTAI------ 276 (949)
Q Consensus 213 ~i~~~~p~~q~~il~ll~~~~~~~p~~~~~l-----i~~L~~lL~s~s~a---V~~Eaa~~l~~l~--~~~~~l------ 276 (949)
.+...+|-.|..+++.+..++. ++..+..+ ++.|..+|.+.+.. ++..|+.+|.++. .+|..+
T Consensus 465 Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 465 EMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred HHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 1123455666677777776653 34444333 35666666665443 6777777776652 333321
Q ss_pred HHHHHHHHHHHccCCc------------hHH-HHHHHHHHHHHHhhC--------hhhHH--HHHHhheeccCCCCHHHH
Q 002235 277 RAAANTYSQLLLSQSD------------NNV-KLIVLDRLNELRSSH--------RDIMV--DLIMDVLRALNSPNLDIR 333 (949)
Q Consensus 277 ~~~a~~li~lll~~~d------------~nv-r~iaL~~L~~l~~~~--------p~~l~--~~~~~il~~L~d~d~~Ir 333 (949)
..++.+++.+|..+++ +.+ +|-|+..|..|+... ..++. .....+..++.+++..||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 1355666666641111 112 777777777776542 11333 245666667777777777
Q ss_pred HHHHHHHHhhcC
Q 002235 334 RKTLDIVLELIT 345 (949)
Q Consensus 334 ~~aL~lL~~l~~ 345 (949)
+.|.+++..|+.
T Consensus 624 rAA~elI~NL~~ 635 (778)
T 3opb_A 624 RSTLELISNMMS 635 (778)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777777664
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.08 E-value=0.00011 Score=82.19 Aligned_cols=238 Identities=12% Similarity=0.096 Sum_probs=140.0
Q ss_pred HHHHHHHHHhcchhh----------HHHHHHHHHhh--------cCccChhHHHHHHHHHHHhhhcCchhHH------HH
Q 002235 188 KRNAFLMLFTCDQDR----------AINYLLTHVDR--------VSEWGELLQMVVLELIRKVCRTNKGEKG------KY 243 (949)
Q Consensus 188 ~~~Al~~L~~i~~~~----------ai~~L~~~l~~--------i~~~~p~~q~~il~ll~~~~~~~p~~~~------~l 243 (949)
+..|+.+|..+.-+. +++.|..++.. ....++-.|......|+.++..++..+. -.
T Consensus 49 ~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 128 (354)
T 3nmw_A 49 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128 (354)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCc
Confidence 335666666654221 35566666631 0112456788888999999877654333 34
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHccCCC--hH---HHH--HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhCh----h
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSLSSA--PT---AIR--AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR----D 312 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l~~~--~~---~l~--~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p----~ 312 (949)
++.|..+|++.++.|+..|+.+|.+++.. +. .+. .++..++++|.+++++.++..++..|..|+...+ .
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~ 208 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHH
Confidence 78999999999999999999999998642 22 121 1456788887777788999999999988876332 2
Q ss_pred hH--HHHHHhheeccCCCCH----HHHHHHHHHHHhhc-----CCCcHHHHHHH-HHHHHHHhccCCccCCHHHHHHHHH
Q 002235 313 IM--VDLIMDVLRALNSPNL----DIRRKTLDIVLELI-----TPRNINEVVLM-LKKEVVKTQSGELEKNGEYRQMLIQ 380 (949)
Q Consensus 313 ~l--~~~~~~il~~L~d~d~----~Ir~~aL~lL~~l~-----~~~Nv~~Iv~~-L~kel~~~~~~~~d~~~e~r~~lv~ 380 (949)
+. ...+..+..+|.+++. .++..+.-+|..++ ++.+...+++. ....+..... ..+.+.+..++.
T Consensus 209 i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~ 285 (354)
T 3nmw_A 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---SHSLTIVSNACG 285 (354)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT---CSCHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc---CCChHHHHHHHH
Confidence 22 2344555666665443 48888888777765 34443332210 0011111111 234556666666
Q ss_pred HHHHhHccCcccH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcc
Q 002235 381 AIHSCAIKFPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPK 428 (949)
Q Consensus 381 aI~~la~kf~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~ 428 (949)
+|+.++...++.. ...++.|+++|+.....+...+..+|.++....|+
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 6666664333221 13355555555555444555555556665555554
No 69
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=98.08 E-value=0.0003 Score=74.48 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=137.9
Q ss_pred EEecceeEEEEEEEecChhhhcceEEEEeecC----CeEEeecCCcceeCCCCeeEEEEEEEEecCCcceeeeeEEEecC
Q 002235 735 TVHHYDIVLDVTVINRTKETLQNLCLELATMG----DLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETS 810 (949)
Q Consensus 735 ~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g----~l~~~~~p~~~~l~p~~~~~i~~~~kv~s~e~g~ifg~i~y~~~ 810 (949)
...+..-.+-+.+.|.++..|+|+++++...+ .|.+...|.+.++.|++.....+.+....+-.+.+--++.|...
T Consensus 38 e~~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v~~~~~f~~~P~l~isf~~~ 117 (247)
T 1kyf_A 38 EFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYG 117 (247)
T ss_dssp EEETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEEEEET
T ss_pred EEeCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEEEEccccCCCCEEEEEEEEC
Confidence 34566778888999999999999999997643 37777777777899999999999888877666666666777653
Q ss_pred CccccceEEecceeeccccccccccCChhhhHHhhcccCc-CcEE--Eee-ccCCCHHHHHHHHHHHcCCeecCCCCccC
Q 002235 811 NVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEW-ENKV--AVN-TVIQDEKEFLDHIIKSTNMKCLTAPSALD 886 (949)
Q Consensus 811 ~~~~~~~~~lndi~i~i~DyI~p~~~~~~~Fr~~W~efew-Enk~--~v~-~~~~~l~~~l~~li~~tnm~~l~~~~~~~ 886 (949)
+.... +.| .+-|.+--|+.|..++.++|.+.|..+.- +.+. .++ ...-++ +.+..++..+||.++++-+..+
T Consensus 118 -g~~~~-~~L-kLPi~l~KF~~p~~~~~~~Ff~rW~~l~~~~~E~q~~f~~~~~~~~-~~~~~~l~gf~~~vl~~vDpn~ 193 (247)
T 1kyf_A 118 -GTFQN-VSV-KLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDT-EITKAKIIGFGSALLEEVDPNP 193 (247)
T ss_dssp -TEEEE-EEE-ECCCCGGGGEEECCCCHHHHHHHHTTCCSGGGEEEEEEECSSCCCH-HHHHHHHHHHTSEEECSSSSST
T ss_pred -CeeeE-EEE-ecCcEEEEeecCCcCCHHHHHHHHHhccCCCceeEEEeccCCCcCH-HHHHHHHhcCCeEEeeCCCCCc
Confidence 22222 366 67889999999999999999999999953 2222 222 222355 4455667799999998854333
Q ss_pred CCchHHHHHhhccccc---CceEEEEEEEEEecCCceEEEEEEeeCChhHHHhhhhhhh
Q 002235 887 GDCGFLAANLYAKSVF---GEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKIT 942 (949)
Q Consensus 887 ~~~~~~~~nL~~~s~~---ge~al~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~~i~ 942 (949)
.+ ++|-.+| +..+.+=+++|-+.+ +-...++|||.+.++|..|.+-+.
T Consensus 194 ~n-------iv~agi~~t~~~~~gcLlRlE~n~~-~~~~rltvRss~~~vs~~l~~ll~ 244 (247)
T 1kyf_A 194 AN-------FVGAGIIHTKTTQIGCLLRLEPNLQ-AQMYRLTLRTSKDTVSQRLCELLS 244 (247)
T ss_dssp TS-------EEEEEEEECSSCEEEEEEEEEEETT-TTEEEEEEEESSHHHHHHHHHHHH
T ss_pred Cc-------EEEEEEEEcCCCcEEEEEEEEEcCc-CCEEEEEEEECChHHHHHHHHHHH
Confidence 22 2222222 124555566776544 446899999999999988876553
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.03 E-value=0.0015 Score=64.60 Aligned_cols=208 Identities=13% Similarity=0.165 Sum_probs=153.6
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCC-h--hHHHHHHHHHHhcchhhHHHHH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD-P--SAKRNAFLMLFTCDQDRAINYL 207 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d-~--~v~~~Al~~L~~i~~~~ai~~L 207 (949)
.+...+...|.|.-..|+|+|+.-+..+.+ ..|+++.-....+-.+|..+.. | .-...||..+..++|+. ++..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~--~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~-v~~v 108 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL-VKSM 108 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH-HHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHH--HhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH-HHhh
Confidence 345566778999999999999999999999 8898886554433344433322 2 23567888888899986 4443
Q ss_pred HHH-HhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC-hHHHHHHHHHHHH
Q 002235 208 LTH-VDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA-PTAIRAAANTYSQ 285 (949)
Q Consensus 208 ~~~-l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~~l~~~a~~li~ 285 (949)
+.. +......+|-..+.+--.+..+++.+|+....+.+-+..+|.+++..=...|.+.|..+..+ +..+.--...++.
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~a 188 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIIN 188 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHG
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHH
Confidence 333 23333457888888888899999999999999999999999999988888888888888654 3222112233334
Q ss_pred HHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhh
Q 002235 286 LLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 286 lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l 343 (949)
+ +.+.|--||-.++++|..++..+|. +.+.+.+.+.-++|...-+..+.-+-|.++
T Consensus 189 L-L~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 189 L-LHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp G-GGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred H-HcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3 4688889999999999999999998 777777777778888877777665555543
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.03 E-value=5.7e-05 Score=79.47 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=130.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHHccCC---C--hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHH----
Q 002235 246 IIISLLNAPSTAVIYECAGTLVSLSS---A--PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD---- 316 (949)
Q Consensus 246 ~L~~lL~s~s~aV~~Eaa~~l~~l~~---~--~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~---- 316 (949)
.+.+.+++.+-.++++|+..|..+.. . .......+..+...+-++++.++|..++..+..|+..-...|.+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35666788888888888888766521 1 11123455555555534788999999999999998753333443
Q ss_pred HHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC-cc----
Q 002235 317 LIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-PE---- 391 (949)
Q Consensus 317 ~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf-~~---- 391 (949)
....++.++.|++..||..+...|..++...+++.+++.|...+ . +.++..|..++..|+.+...+ |.
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l----~---~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESL----S---NKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----T---CSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----c---CCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 44557778899999999999999999999889999888776533 2 457899999999999987666 32
Q ss_pred -cHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCc
Q 002235 392 -VASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNP 427 (949)
Q Consensus 392 -~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p 427 (949)
..+.+++.|..+|.+....++..+...+..+....+
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 246888999999999888888888888777765443
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.021 Score=69.23 Aligned_cols=425 Identities=13% Similarity=0.159 Sum_probs=249.0
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHHhC--CCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcC---------
Q 002235 17 AIANEIKEALEGNDVPAKVDAMKKAIMLLLN--GETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTD--------- 85 (949)
Q Consensus 17 ~~~~eir~~L~s~~~~~k~~aL~kli~l~~~--G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~--------- 85 (949)
+=+.|||..+..+.+. ....+..+++.+.. |++++.+-|-+-..++..+...+|.++.+.+..+-+..
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 210 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKEVRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVV 210 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTTTTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccchhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3457788777755444 66777788887665 45556544444333345677788888877664432211
Q ss_pred -----------CC-CCCCchHHHHHHHHH------------------------hhc-CCCCHHHHHHHHHHhhcCCchhh
Q 002235 86 -----------AK-GRVLPEMILICQNLR------------------------NNL-QHPNEYIRGVTLRFLCRLNETEI 128 (949)
Q Consensus 86 -----------~d-~~l~~e~iLv~NsL~------------------------KDL-~~~N~~iR~~ALr~L~~I~~~el 128 (949)
++ |. ++++.+.+.+- .-+ ..+++-+.-..|+.|+..+..+-
T Consensus 211 ~~~~~l~~e~~~~~~~--~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~ 288 (778)
T 3opb_A 211 DFMSSLIVEAEIDVGN--DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET 288 (778)
T ss_dssp HHHHHHHHHHHHTCSS--CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHhhccCCCC--ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH
Confidence 11 11 23333333221 122 23445555666777766554332
Q ss_pred -----HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcc---cccchHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002235 129 -----IEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQ---LLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (949)
Q Consensus 129 -----~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~---li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~ 200 (949)
.+...+.+.+.+.+ ..+|..|++++.|+.. .... -+.+..+.+.++|. ..+...+..|+..|..+.-
T Consensus 289 cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~--~~~~~~~si~~La~~~~~~L~-~~~~~~~~~AvEgLaYLSl 363 (778)
T 3opb_A 289 MRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWS--FTKLTCINLKQLSEIFINAIS-RRIVPKVEMSVEALAYLSL 363 (778)
T ss_dssp HHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTG--GGTCTTCCHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhc--CCCCCcCcHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHhC
Confidence 34455666666643 6899999999999887 3321 12234455666663 3344447788887776542
Q ss_pred hh-----------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcC---------------------ch----------
Q 002235 201 DR-----------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTN---------------------KG---------- 238 (949)
Q Consensus 201 ~~-----------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~---------------------p~---------- 238 (949)
+. ++..|+.+++. ..+.-.+--++.++..++... |.
T Consensus 364 ~~~VKe~L~~d~~~L~~Lv~llk~--~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~ 441 (778)
T 3opb_A 364 KASVKIMIRSNESFTEILLTMIKS--QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAA 441 (778)
T ss_dssp SSHHHHHHHHCHHHHHHHHHHHTT--TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHH
T ss_pred CHHHHHHHHhCHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccc
Confidence 21 24455555542 111222444444444333211 10
Q ss_pred -----h-H------HHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHH----HH-HHHHHHHHHHccCCchH--HHHHH
Q 002235 239 -----E-K------GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTA----IR-AAANTYSQLLLSQSDNN--VKLIV 299 (949)
Q Consensus 239 -----~-~------~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~----l~-~~a~~li~lll~~~d~n--vr~ia 299 (949)
+ . ...+..|..++.+.++.++-.|+++|.+++.+++. ++ .+...+++++.+.++.. .|..|
T Consensus 442 ~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~A 521 (778)
T 3opb_A 442 KEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521 (778)
T ss_dssp HHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHH
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHH
Confidence 0 0 12457788889999999999999999999765432 22 24577888886655432 89999
Q ss_pred HHHHHHHHh-hChhhH-H-----HHHHhheeccCC-CCHH------------H-HHHHHHHHHhhcCCC-c----H-HHH
Q 002235 300 LDRLNELRS-SHRDIM-V-----DLIMDVLRALNS-PNLD------------I-RRKTLDIVLELITPR-N----I-NEV 352 (949)
Q Consensus 300 L~~L~~l~~-~~p~~l-~-----~~~~~il~~L~d-~d~~------------I-r~~aL~lL~~l~~~~-N----v-~~I 352 (949)
...|.+|.. .+|..+ . .-+.-++.+|.. ++.. + +..|+..|.++++-. | + ..|
T Consensus 522 A~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~I 601 (778)
T 3opb_A 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHI 601 (778)
T ss_dssp HHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHH
Confidence 999999874 455542 1 223445556652 2211 2 667888888888653 2 2 335
Q ss_pred HHH--HHHHHHHhccCCccCCHHHHHHHHHHHHHhHc-------cCcc----cHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 002235 353 VLM--LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAI-------KFPE----VASTVVHLLMDFLGDSNVASAIDVIIFV 419 (949)
Q Consensus 353 v~~--L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~-------kf~~----~~~~~l~~L~~lL~~~~~~v~~e~i~~l 419 (949)
+.+ -...+...+. +.+...|+.+...|+.++. +|-. .....++.|+.++..++..+...+..++
T Consensus 602 i~~~ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 602 VSTKVYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp HHSHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 542 3344555554 4467899999999998873 2211 1122488999999887777777777777
Q ss_pred HHHHHhCccc------HHHHHHHHHHHhccc-chHHHHHHHh
Q 002235 420 REIIEMNPKL------RVSIITRLLDNFYQI-RAARVCTCAL 454 (949)
Q Consensus 420 ~~ii~~~p~~------~~~~l~~L~~~l~~i-~~~~v~~~~l 454 (949)
..+-..+|.. +...+..|++.+++. +.++++..++
T Consensus 679 AnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~ 720 (778)
T 3opb_A 679 ANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLL 720 (778)
T ss_dssp HHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence 7775555543 135677788888774 5566654443
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.93 E-value=2.9e-05 Score=73.76 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=84.7
Q ss_pred hhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHH
Q 002235 54 LFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLI 133 (949)
Q Consensus 54 lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~ 133 (949)
....+++ ++.++|..+|..+...+..+ . +.. +..|.+-|+|+++.+|..|+++|+++.+++.++
T Consensus 13 ~~~~l~~-~L~~~~~~vR~~A~~~L~~~---~------~~~---~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~--- 76 (131)
T 1te4_A 13 GLVPRGS-HMADENKWVRRDVSTALSRM---G------DEA---FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVE--- 76 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSC---S------STT---HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHH---
T ss_pred cHHHHHH-HhcCCCHHHHHHHHHHHHHh---C------chH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHH---
Confidence 3344455 56788888887765443322 1 111 377888889999999999999999999877654
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 134 ~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
.+.+++.|+++.||+.|+.++.++.. ++..+.+..+| .|.|+.|+..|..+|..|
T Consensus 77 -~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l-~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 77 -PLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLA-ETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -HHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHT-TSCCTHHHHHHHHHGGGC
T ss_pred -HHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHH-hCCCHHHHHHHHHHHHhC
Confidence 45567789999999999999998854 23345555655 789999999999888654
No 74
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.92 E-value=0.01 Score=75.04 Aligned_cols=312 Identities=10% Similarity=0.086 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHH--ccCCChhHHHHHHHHHHhcchhhH-
Q 002235 127 EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVL--STEQDPSAKRNAFLMLFTCDQDRA- 203 (949)
Q Consensus 127 el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L--~~d~d~~v~~~Al~~L~~i~~~~a- 203 (949)
+--+.+-..+.+++.+..+.||+.++.++..|.+. -.| .+|++++..++ ...+|+..+..|+.+|.++.+...
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~-d~p---~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS-DFP---DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HST---TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-hCc---cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556699999999999999883 234 45776666543 245677788888888887765310
Q ss_pred -------HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCch---------HHHHHHHHHHH
Q 002235 204 -------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPST---------AVIYECAGTLV 267 (949)
Q Consensus 204 -------i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~---------aV~~Eaa~~l~ 267 (949)
...+...++.. ..++ ++++.. +...++...+ .++..+++++.
T Consensus 157 ~~~~~~~~~~l~~~l~~~--~~~l-----l~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~ 214 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVF--TAPF-----LNLLKT---------------VDEQITANENNKASLNILFDVLLVLIKLYY 214 (960)
T ss_dssp SCCCHHHHHHHHHHHHHH--HHHH-----HHHHHH---------------HHHHTTCCC--CHHHHHHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHH--HHHH-----HHHHHH---------------HHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 01111111100 0111 111111 1111221110 11122333333
Q ss_pred ccC--CChHHHH----HHHHHHHHHHcc-----CCc---------hHHHHHHHHHHHHHHhhChhhHHHHHHhheec---
Q 002235 268 SLS--SAPTAIR----AAANTYSQLLLS-----QSD---------NNVKLIVLDRLNELRSSHRDIMVDLIMDVLRA--- 324 (949)
Q Consensus 268 ~l~--~~~~~l~----~~a~~li~lll~-----~~d---------~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~--- 324 (949)
.+. ..|..+. .....+.+.+.. ..| ..+|-.+++.|..+..++|..|.+|...++.+
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~ 294 (960)
T 1wa5_C 215 DFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWN 294 (960)
T ss_dssp HHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1122221 122222333311 111 24677888899999999998888776665443
Q ss_pred -cC-----CCCHHHHHHHHHHHHhhcCCCc----------HHHHH-HHHHHHHHHhccCC---c--------------cC
Q 002235 325 -LN-----SPNLDIRRKTLDIVLELITPRN----------INEVV-LMLKKEVVKTQSGE---L--------------EK 370 (949)
Q Consensus 325 -L~-----d~d~~Ir~~aL~lL~~l~~~~N----------v~~Iv-~~L~kel~~~~~~~---~--------------d~ 370 (949)
+. ..+..++..+++.+..++.... +..++ ..+...+. +...+ + +.
T Consensus 295 ~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~-~~~~d~e~w~~dp~e~i~~d~e~~d 373 (960)
T 1wa5_C 295 LLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVT-LREEDVELFEDDPIEYIRRDLEGSD 373 (960)
T ss_dssp HHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHS-CCGGGTTTTTTCHHHHHHHHHHC--
T ss_pred HHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcC-CCHHHHHHHhcCHHHHHHhccCccc
Confidence 21 4567899999999998775432 33333 22222221 10000 0 11
Q ss_pred CHHHHHHHHHHHHHhHccCcc-cHHHHHHHHHHHHh------CCCcccHHHHHHHHHHHHHhC-----c--------ccH
Q 002235 371 NGEYRQMLIQAIHSCAIKFPE-VASTVVHLLMDFLG------DSNVASAIDVIIFVREIIEMN-----P--------KLR 430 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~kf~~-~~~~~l~~L~~lL~------~~~~~v~~e~i~~l~~ii~~~-----p--------~~~ 430 (949)
....|..+...+..++..|++ ..+.++.++.+.+. ..+-...+.++..+..+.... + ++-
T Consensus 374 ~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 374 TDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp --CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred ccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 235788888999999999873 23455566555565 222123334567777775321 1 222
Q ss_pred HHHHHHHHHHhccc--chHHHHHHHhhhcccCCCCCC
Q 002235 431 VSIITRLLDNFYQI--RAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 431 ~~~l~~L~~~l~~i--~~~~v~~~~lwiLGEy~~~~~ 465 (949)
......+...+.+- .++.++++++|++|.|++...
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~ 490 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT 490 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence 23344555555553 278899999999999998763
No 75
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.85 E-value=0.00057 Score=76.45 Aligned_cols=236 Identities=15% Similarity=0.086 Sum_probs=157.4
Q ss_pred cCCCCHHHHHHHHHHhhcCCchhhHH------HHHHHHHHhcc-----------CCChHHHHHHHHHHHHHhcCCCCcc-
Q 002235 105 LQHPNEYIRGVTLRFLCRLNETEIIE------PLIPSVLQNLQ-----------HRHPYIRRNAILAVMAIYKLPQGEQ- 166 (949)
Q Consensus 105 L~~~N~~iR~~ALr~L~~I~~~el~~------~l~~~I~~~L~-----------d~~pyVRk~A~lal~ki~~l~~~~~- 166 (949)
+..|++...+.|+++|++|...+-.. ..++.+.+.|. +.++.+++.|+.++.++.. .+++
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~--~~~~~ 118 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVAN 118 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTS--SCHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHc--CCHHH
Confidence 45566677888999999885322111 13445555552 2468899999999999987 4432
Q ss_pred --cc--c-chHHHHHHHHccCCChhHHHHHHHHHHhcchh---h---------HHHHHHHHHhhcCccChhHHHHHHHHH
Q 002235 167 --LL--V-DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---R---------AINYLLTHVDRVSEWGELLQMVVLELI 229 (949)
Q Consensus 167 --li--~-~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~---~---------ai~~L~~~l~~i~~~~p~~q~~il~ll 229 (949)
.+ . .+.+.+-.+| ...|+.++.+|..+|..+... + +++.|++++.. ..++-.+...+..+
T Consensus 119 k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~--~~~~~~~~~A~~aL 195 (354)
T 3nmw_A 119 KATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKESTLKSVLSAL 195 (354)
T ss_dssp HHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 22 1 1133333544 778899999999999887531 1 35566665432 23455677777888
Q ss_pred HHhhhcCchhH------HHHHHHHHHHHcCCch----HHHHHHHHHHHccCC----ChHHHHH-----HHHHHHHHHccC
Q 002235 230 RKVCRTNKGEK------GKYIKIIISLLNAPST----AVIYECAGTLVSLSS----APTAIRA-----AANTYSQLLLSQ 290 (949)
Q Consensus 230 ~~~~~~~p~~~------~~li~~L~~lL~s~s~----aV~~Eaa~~l~~l~~----~~~~l~~-----~a~~li~lll~~ 290 (949)
..++..++..+ .-.++.|..+|++.++ .|+.+|+.+|.+++. .++..+. +...++++| .+
T Consensus 196 ~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL-~~ 274 (354)
T 3nmw_A 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KS 274 (354)
T ss_dssp HHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT-TC
T ss_pred HHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH-cC
Confidence 77765343332 2356788889987765 489999999988863 4433222 345677766 56
Q ss_pred CchHHHHHHHHHHHHHHhhChhh---HH--HHHHhheeccCCCCHHHHHHHHHHHHhhcCC
Q 002235 291 SDNNVKLIVLDRLNELRSSHRDI---MV--DLIMDVLRALNSPNLDIRRKTLDIVLELITP 346 (949)
Q Consensus 291 ~d~nvr~iaL~~L~~l~~~~p~~---l~--~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~ 346 (949)
++..++--+...|..++..+++. +. ..+.-+..++.+.+..+|+.|...|..++..
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 77889999999999998544432 22 2356677888899999999999999887654
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.84 E-value=0.0025 Score=80.71 Aligned_cols=319 Identities=10% Similarity=0.189 Sum_probs=166.1
Q ss_pred CCCcchhHHHHHHHHHHhhcC--CCCCCCc-----hH-HHHHHHHHhhcCCC---CHHHHHHHHHHhhcCCc---hhhHH
Q 002235 65 SEDHTIQKLLLLYLEIIDKTD--AKGRVLP-----EM-ILICQNLRNNLQHP---NEYIRGVTLRFLCRLNE---TEIIE 130 (949)
Q Consensus 65 s~d~~lKrL~YL~l~~~~~~~--~d~~l~~-----e~-iLv~NsL~KDL~~~---N~~iR~~ALr~L~~I~~---~el~~ 130 (949)
+.+-..|..+++.+..++... .+....+ ++ -+..+.+..+|+++ +|++|+.|+.+++++.+ ++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 566678888999888886321 1100111 34 23456677777777 99999999999999864 57899
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCC----------c-ccccchHHHHHHHH--ccCC--------ChhHHH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG----------E-QLLVDAPEMIEKVL--STEQ--------DPSAKR 189 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~----------~-~li~~~~e~l~~~L--~~d~--------d~~v~~ 189 (949)
++++.+.++|.|.++-||..|+.|+.++... .+ + .+.|-+.++++.++ .... +.....
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~-~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~ 574 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILTI-RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC-BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc-ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHH
Confidence 9999999999999999999999999998762 11 1 24444556665532 1222 222233
Q ss_pred HHHHHHHhcchhhH-------HHHHHHHHhhc--CccChhHHHHHHHHHHHhhhc-Cchh----HHHHHHHHHHHHcCCc
Q 002235 190 NAFLMLFTCDQDRA-------INYLLTHVDRV--SEWGELLQMVVLELIRKVCRT-NKGE----KGKYIKIIISLLNAPS 255 (949)
Q Consensus 190 ~Al~~L~~i~~~~a-------i~~L~~~l~~i--~~~~p~~q~~il~ll~~~~~~-~p~~----~~~li~~L~~lL~s~s 255 (949)
.|+..+.+..++.. +..|...+... +..++-+...+++.++.+++. .|.. ...+++.+...|+...
T Consensus 575 ~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~ 654 (960)
T 1wa5_C 575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI 654 (960)
T ss_dssp HHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh
Confidence 34433333222221 23344444433 123555566778888777665 3432 3455566666666543
Q ss_pred hHH---HHHHHHHHHccC-CChHHHHHHHHHHH--HHHccCCchHHHHHHHHHHHHHHhhChhhH---HHHHHhheeccC
Q 002235 256 TAV---IYECAGTLVSLS-SAPTAIRAAANTYS--QLLLSQSDNNVKLIVLDRLNELRSSHRDIM---VDLIMDVLRALN 326 (949)
Q Consensus 256 ~aV---~~Eaa~~l~~l~-~~~~~l~~~a~~li--~lll~~~d~nvr~iaL~~L~~l~~~~p~~l---~~~~~~il~~L~ 326 (949)
..+ .++....++... +-++.+..+...++ ..+ ..+ .++- ..++.|..+....+..+ +.....+.+++.
T Consensus 655 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~-~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 731 (960)
T 1wa5_C 655 QEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVW-ELK-GNIP-AVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIA 731 (960)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGG-CCT-TTHH-HHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHh-cCC-CCch-hHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 322 333333333322 11111222222222 222 222 2333 34455555544443221 111112223344
Q ss_pred CCCHHHHHHHHHHHHhhc--CCCc-HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcc
Q 002235 327 SPNLDIRRKTLDIVLELI--TPRN-INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPE 391 (949)
Q Consensus 327 d~d~~Ir~~aL~lL~~l~--~~~N-v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~ 391 (949)
+... +..+..++..++ -+.. +...+..+...+...... +..+++++..+..++.++.+|.+
T Consensus 732 ~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~ 795 (960)
T 1wa5_C 732 SKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGS 795 (960)
T ss_dssp CTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCH
Confidence 4331 244555553322 1223 333333333333222221 34577888888888888866543
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.68 E-value=0.0019 Score=74.64 Aligned_cols=229 Identities=15% Similarity=0.082 Sum_probs=154.6
Q ss_pred HHHHHHHhhcCCchhhHH------HHHHHHHHhcc-----------CCChHHHHHHHHHHHHHhcCCCCcc---cc---c
Q 002235 113 RGVTLRFLCRLNETEIIE------PLIPSVLQNLQ-----------HRHPYIRRNAILAVMAIYKLPQGEQ---LL---V 169 (949)
Q Consensus 113 R~~ALr~L~~I~~~el~~------~l~~~I~~~L~-----------d~~pyVRk~A~lal~ki~~l~~~~~---li---~ 169 (949)
.+.|+.+|++|...+-.. ..++.+.+.|. +.++.+++.|+.++.++.. .++. .+ .
T Consensus 165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~--~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC--CCcccHHHHHHcC
Confidence 348999999886433222 13455555552 2468899999999999987 4442 22 1
Q ss_pred chHHHHHHHHccCCChhHHHHHHHHHHhcchh---h---------HHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCc
Q 002235 170 DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---R---------AINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNK 237 (949)
Q Consensus 170 ~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~---~---------ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p 237 (949)
...+.+-.+| ...|+.++.+|..+|..+... . +++.|+.++.. ..++-.+..++..+..++..++
T Consensus 243 GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 243 GCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--CCSHHHHHHHHHHHHHHHHHCH
T ss_pred CcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--CCCHHHHHHHHHHHHHHccCCH
Confidence 1133333544 778899999999999887541 1 34556665432 2356667788888888776333
Q ss_pred hhHH------HHHHHHHHHHcCCch----HHHHHHHHHHHccCC----ChHHHHH-----HHHHHHHHHccCCchHHHHH
Q 002235 238 GEKG------KYIKIIISLLNAPST----AVIYECAGTLVSLSS----APTAIRA-----AANTYSQLLLSQSDNNVKLI 298 (949)
Q Consensus 238 ~~~~------~li~~L~~lL~s~s~----aV~~Eaa~~l~~l~~----~~~~l~~-----~a~~li~lll~~~d~nvr~i 298 (949)
..+. -.++.|..+|++.++ .|+.+|+.+|.+++. .+...+. +...++++| .+++..++--
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL-~~~~~~v~~~ 398 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS-SCSCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH-cCCChHHHHH
Confidence 3222 346788889988765 489999999988863 4433222 345667766 5677889999
Q ss_pred HHHHHHHHHhhChhh---HH--HHHHhheeccCCCCHHHHHHHHHHHHhhcCCC
Q 002235 299 VLDRLNELRSSHRDI---MV--DLIMDVLRALNSPNLDIRRKTLDIVLELITPR 347 (949)
Q Consensus 299 aL~~L~~l~~~~p~~---l~--~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~ 347 (949)
+...|..++..+++. +. ..+.-+..+|.+.+..+++.|...|..++..+
T Consensus 399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999998655542 21 23566778888999999999999999887643
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00046 Score=73.26 Aligned_cols=192 Identities=8% Similarity=0.083 Sum_probs=117.9
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHH-HhcCCCCcccc---cchH---HHHHHHHccCCChhHHHHHHHHHHhcchhhH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMA-IYKLPQGEQLL---VDAP---EMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA 203 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~k-i~~l~~~~~li---~~~~---e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a 203 (949)
-+-+.+.+.+.++++.-||.|+.++.. +.. ..|.+. .++. +.+.+.|.+|+|+.|+..|+.+|.++...
T Consensus 16 kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~--~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~-- 91 (249)
T 2qk1_A 16 KLPKDFQERITSSKWKDRVEALEEFWDSVLS--QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK-- 91 (249)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHTGG--GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--
T ss_pred hCChhHHHHhhcCCHHHHHHHHHHHHHHHHh--cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--
Confidence 333455677899999999999999999 886 566665 2333 44445454799999998888887665422
Q ss_pred HHHHHHHHhhcCccC-hhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHH---HHHHHHccC-CC-h-HHH
Q 002235 204 INYLLTHVDRVSEWG-ELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYE---CAGTLVSLS-SA-P-TAI 276 (949)
Q Consensus 204 i~~L~~~l~~i~~~~-p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~E---aa~~l~~l~-~~-~-~~l 276 (949)
+. .+.+. ++....+-- +...+..+.+.|+-. |+.+++... +. + ..+
T Consensus 92 -------l~-~~~f~~~y~~~llp~-------------------ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l 144 (249)
T 2qk1_A 92 -------LK-TPGFSKDYVSLVFTP-------------------LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN 144 (249)
T ss_dssp -------HC-TTTSCHHHHHHHHHH-------------------HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT
T ss_pred -------cc-cccccHHHHHHHHHH-------------------HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH
Confidence 11 01344 554443333 333344444444322 333333322 11 0 012
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhCh---hhH-----HHHHHhheeccCCCCHHHHHHHHHHHHh---hcC
Q 002235 277 RAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR---DIM-----VDLIMDVLRALNSPNLDIRRKTLDIVLE---LIT 345 (949)
Q Consensus 277 ~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p---~~l-----~~~~~~il~~L~d~d~~Ir~~aL~lL~~---l~~ 345 (949)
..+...++..+ .++.+.+|..++..|..+....+ ..| ......+..+++|++..+|..|.+.+.. .+.
T Consensus 145 ~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 145 EDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 34455556554 66788999999999998887655 333 3344456778899999999988877765 345
Q ss_pred CCcHHHHHH
Q 002235 346 PRNINEVVL 354 (949)
Q Consensus 346 ~~Nv~~Iv~ 354 (949)
++.+...+.
T Consensus 224 ~~~~~p~l~ 232 (249)
T 2qk1_A 224 MNTFVKTLE 232 (249)
T ss_dssp SGGGHHHHH
T ss_pred HHHHHHHHH
Confidence 566665554
No 79
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.37 E-value=0.082 Score=66.85 Aligned_cols=398 Identities=12% Similarity=0.058 Sum_probs=196.3
Q ss_pred CCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC---chh----hHHHHHHHH
Q 002235 64 PSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN---ETE----IIEPLIPSV 136 (949)
Q Consensus 64 ~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~---~~e----l~~~l~~~I 136 (949)
++.|...|+-++-++..+.+. ++....|-.+...-...++.+|-.|+..|-+.. .++ -.+.+-..+
T Consensus 18 p~sd~~~r~~A~~~L~~~q~s-------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRSS-------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHS-------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 445778888888888887543 345444544443222226778877776665421 122 223333333
Q ss_pred HHhcc-----CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCCh-hHHHHHHHHHHhcchh---------
Q 002235 137 LQNLQ-----HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDP-SAKRNAFLMLFTCDQD--------- 201 (949)
Q Consensus 137 ~~~L~-----d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~-~v~~~Al~~L~~i~~~--------- 201 (949)
...+. +..++||.+.+.++..+++. ..|+.-|++.+-+-.++ ..+++ .+.-..+..|..+..+
T Consensus 91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~-~~p~~Wp~~i~~l~~~~-~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~ 168 (980)
T 3ibv_A 91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQ-LYPSNWNDFFASLQGVI-AASSQSEFSNFYLKVLLSIGDEIADSLVLKT 168 (980)
T ss_dssp HHHHHHCCSTTSCTHHHHHHHHHHHHHHHH-HTTTTCTTHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHCCCCSCCC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-hCcccCchHHHHHHHHh-cCCChhHHHHHHHHHHHHhHHHHHhcccccC
Confidence 33332 35789999999999999883 34543333332222223 22222 2333334444411111
Q ss_pred -----hH---HHH------------HHHHHhhc-CccChhHHHHHHHHHHHhhhcCchh---HHHHHHHHHHHHcCCchH
Q 002235 202 -----RA---INY------------LLTHVDRV-SEWGELLQMVVLELIRKVCRTNKGE---KGKYIKIIISLLNAPSTA 257 (949)
Q Consensus 202 -----~a---i~~------------L~~~l~~i-~~~~p~~q~~il~ll~~~~~~~p~~---~~~li~~L~~lL~s~s~a 257 (949)
+. .+. ...++... ...++-....+|+.+..+.+--|-. ...+++.+..+|.. +.
T Consensus 169 ~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~ 246 (980)
T 3ibv_A 169 DVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EE 246 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HH
T ss_pred HHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hH
Confidence 00 001 11111111 1134445667788888876642221 24677777777765 67
Q ss_pred HHHHHHHHHHccC---CChHHHHHHHH--HHHHHH---cc-CCchHHHHHH-------HHHHHHHHhhCh----------
Q 002235 258 VIYECAGTLVSLS---SAPTAIRAAAN--TYSQLL---LS-QSDNNVKLIV-------LDRLNELRSSHR---------- 311 (949)
Q Consensus 258 V~~Eaa~~l~~l~---~~~~~l~~~a~--~li~ll---l~-~~d~nvr~ia-------L~~L~~l~~~~p---------- 311 (949)
++-.|+.+++.+- ..+..-..... .+...+ .. ..|.++.--. -..+..+ ...|
T Consensus 247 ~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~ 325 (980)
T 3ibv_A 247 LRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKEN 325 (980)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhh
Confidence 7888888877662 22322111111 111111 11 3455542111 1122233 3344
Q ss_pred --hhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcC------C-----CcHHHHHHHHHHHHHHhccC----CccC----
Q 002235 312 --DIMVDLIMDVLRALNSPNLDIRRKTLDIVLELIT------P-----RNINEVVLMLKKEVVKTQSG----ELEK---- 370 (949)
Q Consensus 312 --~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~------~-----~Nv~~Iv~~L~kel~~~~~~----~~d~---- 370 (949)
..+...+..++.|..+++.+|...+++.+...+. + .-...++..|..-+.+-+.+ +++.
T Consensus 326 ~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ 405 (980)
T 3ibv_A 326 CSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDS 405 (980)
T ss_dssp HHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccch
Confidence 4556677778889999999999988887765442 1 11223333333333222221 1111
Q ss_pred C-----HHHHHHHHHHHHHhHccCcccHHH-HHHHHHHHHhCC---Ccc----cHHHHHHHHHHHHHhCcc---------
Q 002235 371 N-----GEYRQMLIQAIHSCAIKFPEVAST-VVHLLMDFLGDS---NVA----SAIDVIIFVREIIEMNPK--------- 428 (949)
Q Consensus 371 ~-----~e~r~~lv~aI~~la~kf~~~~~~-~l~~L~~lL~~~---~~~----v~~e~i~~l~~ii~~~p~--------- 428 (949)
+ .+||+.+-..+..++...|...-. +.+.+...+... +.. ..+.++..+..+.+..++
T Consensus 406 ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~ 485 (980)
T 3ibv_A 406 EEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD 485 (980)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCccc
Confidence 1 258888884444455556554322 222444444321 111 122234444444332221
Q ss_pred -cHHHHHHHHHHHhc----ccchHHHHHHHhhhcccCCCCCCcHHHHHHH
Q 002235 429 -LRVSIITRLLDNFY----QIRAARVCTCALWIIGEYCQSLSEVENGIAT 473 (949)
Q Consensus 429 -~~~~~l~~L~~~l~----~i~~~~v~~~~lwiLGEy~~~~~~~~~~~~~ 473 (949)
.-..++.-|...++ ...+|.++..++|++|.|+.....-++++..
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~ 535 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA 535 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHH
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 11234444444443 1357899999999999999988644344433
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.30 E-value=0.0044 Score=67.37 Aligned_cols=134 Identities=8% Similarity=0.065 Sum_probs=98.9
Q ss_pred hee-ccCCCCHHHHHHHHHHHHhhcCCC--cHHH-----HHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCccc
Q 002235 321 VLR-ALNSPNLDIRRKTLDIVLELITPR--NINE-----VVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV 392 (949)
Q Consensus 321 il~-~L~d~d~~Ir~~aL~lL~~l~~~~--Nv~~-----Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~ 392 (949)
++. +|.+++..||..|+.+|..++... +-.. .+..|.+-+.. +.+.++|+.++.+|+.++..+++.
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~------~~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR------DACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc------CCCHHHHHHHHHHHHHHHcCCcHH
Confidence 455 788888889999988888876432 2111 33444433322 336789999999999999877764
Q ss_pred HH-----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHH-----HHHHHHHHhcccchHHHHHHHhhhcccCC
Q 002235 393 AS-----TVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVS-----IITRLLDNFYQIRAARVCTCALWIIGEYC 461 (949)
Q Consensus 393 ~~-----~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~-----~l~~L~~~l~~i~~~~v~~~~lwiLGEy~ 461 (949)
.. ..+..|+.+|++....+..+++.+|.++....|+.+.. ++..|++.+.. .+++++..++|.+|...
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~-~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC-CChhHHHHHHHHHHHHH
Confidence 32 46779999999888888889999999999888876554 57788888876 45688888888888643
No 81
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.26 E-value=0.071 Score=68.02 Aligned_cols=150 Identities=10% Similarity=0.111 Sum_probs=78.1
Q ss_pred HHHhheeccCCCCHHHHHHHHHHHHhhcC--------CCcHHHHHHHHHHHHHHhccCC----------------ccCCH
Q 002235 317 LIMDVLRALNSPNLDIRRKTLDIVLELIT--------PRNINEVVLMLKKEVVKTQSGE----------------LEKNG 372 (949)
Q Consensus 317 ~~~~il~~L~d~d~~Ir~~aL~lL~~l~~--------~~Nv~~Iv~~L~kel~~~~~~~----------------~d~~~ 372 (949)
....++.+...++..|+..+++....++. ..-...++..|...+...+... +..+.
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence 34445555567799999999998887765 1222344444444333322110 00111
Q ss_pred ---HHHHHHHHHHHHhHccCccc-HHHHHHHHHHHHhCCC-c-ccHHHHHHHHHHHHHhCcccH-HHHHHHHHHHhccc-
Q 002235 373 ---EYRQMLIQAIHSCAIKFPEV-ASTVVHLLMDFLGDSN-V-ASAIDVIIFVREIIEMNPKLR-VSIITRLLDNFYQI- 444 (949)
Q Consensus 373 ---e~r~~lv~aI~~la~kf~~~-~~~~l~~L~~lL~~~~-~-~v~~e~i~~l~~ii~~~p~~~-~~~l~~L~~~l~~i- 444 (949)
++++.+-..+..++..++.. ...+.+.+-..+.... + ...+.++..+..+.....+.. ...+..++..+..+
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 34556777777888776642 2455555555554321 1 233345666666644322211 12244444443221
Q ss_pred -------chHHHHHHHhhhcccCCCCCCc
Q 002235 445 -------RAARVCTCALWIIGEYCQSLSE 466 (949)
Q Consensus 445 -------~~~~v~~~~lwiLGEy~~~~~~ 466 (949)
..+.++..++|++|.|+.....
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~ 533 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 1223344699999999876543
No 82
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0031 Score=66.78 Aligned_cols=193 Identities=7% Similarity=0.087 Sum_probs=124.5
Q ss_pred HHHHcCCchHHHHHHHHHHHc-cC-CC------hHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhCh-hhHH-HH
Q 002235 248 ISLLNAPSTAVIYECAGTLVS-LS-SA------PTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR-DIMV-DL 317 (949)
Q Consensus 248 ~~lL~s~s~aV~~Eaa~~l~~-l~-~~------~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p-~~l~-~~ 317 (949)
.+.+++++-.-+.+|...|.. +. .. ..........+.+.+-++++..++..+++.|..|+..-. .-|+ +|
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 344566666666666666655 42 11 111123344445554367788889999999999887543 3344 44
Q ss_pred ----HHhheeccCCCCHHHHHHHHHHH---HhhcCC----CcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhH
Q 002235 318 ----IMDVLRALNSPNLDIRRKTLDIV---LELITP----RNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCA 386 (949)
Q Consensus 318 ----~~~il~~L~d~d~~Ir~~aL~lL---~~l~~~----~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la 386 (949)
...++..+.|....|+..+-..+ ..-+++ ...+.+++.|...+ . ..+...|..++..|++++
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l----~---~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM----K---HKTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT----T---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH----c---CCChHHHHHHHHHHHHHH
Confidence 44567778998899987755444 444433 22668887776432 2 247899999999999999
Q ss_pred ccCcc-------cH-HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHhcccchHHHH
Q 002235 387 IKFPE-------VA-STVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLDNFYQIRAARVC 450 (949)
Q Consensus 387 ~kf~~-------~~-~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~~l~~i~~~~v~ 450 (949)
...+. .. +.+++.|.+++.+....++..++..+..+.+...+ ..+...+.-+++.+-.+++
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~---~~~~p~l~~Ld~~k~~ki~ 243 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEHLDNLKRKKIE 243 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS---GGGHHHHHHSCHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHhHHHHHHHH
Confidence 77663 23 67889999999999888888888888887765544 2244455545554444443
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.15 E-value=0.019 Score=62.38 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=97.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHhhChhh---H-H-HHHHhheeccC-CCCHHHHHHHHHHHHhhcCC--CcHHHH
Q 002235 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI---M-V-DLIMDVLRALN-SPNLDIRRKTLDIVLELITP--RNINEV 352 (949)
Q Consensus 281 ~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~---l-~-~~~~~il~~L~-d~d~~Ir~~aL~lL~~l~~~--~Nv~~I 352 (949)
..++..++.++++.+|-.|+..|..+++.+|.. + . .-+..++.+|. +++..+|+.|+-.|..++.. .+...+
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345552346778888888888888888766642 1 1 23344566676 45788888888888888632 223222
Q ss_pred -----HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH-----HHHHHHHHHHHhCCCcccHHHHHHHHHHH
Q 002235 353 -----VLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-----STVVHLLMDFLGDSNVASAIDVIIFVREI 422 (949)
Q Consensus 353 -----v~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~-----~~~l~~L~~lL~~~~~~v~~e~i~~l~~i 422 (949)
+..|.+-+ . +.+..+++.++.+|..++...+... ..++..|+++|......+...++..|..+
T Consensus 164 ~~~ggi~~L~~lL----~---~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 164 LRLDGFSVLMRAM----Q---QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHTTHHHHHHHHH----H---SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHH----c---CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 33333222 2 3478999999999999987665442 35778999999988888888899999999
Q ss_pred HHhCccc
Q 002235 423 IEMNPKL 429 (949)
Q Consensus 423 i~~~p~~ 429 (949)
+...+..
T Consensus 237 ~~~~~~~ 243 (296)
T 1xqr_A 237 VTDFPQG 243 (296)
T ss_dssp HTTCHHH
T ss_pred HhCChhH
Confidence 8775543
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.08 E-value=0.39 Score=60.33 Aligned_cols=316 Identities=11% Similarity=0.084 Sum_probs=167.8
Q ss_pred CCCCHHHHHHHHHHhhcCCc------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC-CCCcccccchHHHHHHH
Q 002235 106 QHPNEYIRGVTLRFLCRLNE------TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-PQGEQLLVDAPEMIEKV 178 (949)
Q Consensus 106 ~~~N~~iR~~ALr~L~~I~~------~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l-~~~~~li~~~~e~l~~~ 178 (949)
++++...|-.|+.+++.|.. ...++.+++.+. .+.+.+|.||.+|+.+++++... ...+..++...+.+-..
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHA 537 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 56777888889999988753 234555665433 34556999999999999987651 02334455544444444
Q ss_pred HccCCChhHHHHHHHHHHhcchhh---H---HHHH----HHHHhhcCccChhHHHHHHHHHHHhhhcCc-hhHHH----H
Q 002235 179 LSTEQDPSAKRNAFLMLFTCDQDR---A---INYL----LTHVDRVSEWGELLQMVVLELIRKVCRTNK-GEKGK----Y 243 (949)
Q Consensus 179 L~~d~d~~v~~~Al~~L~~i~~~~---a---i~~L----~~~l~~i~~~~p~~q~~il~ll~~~~~~~p-~~~~~----l 243 (949)
| .+ +.|+.+|..+|..++.+- - ++.| ..++.. ...++-.+..+++.++.++..-| ..... +
T Consensus 538 l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l 613 (963)
T 2x19_B 538 L-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFLLSALQVEEILKNLHSL 613 (963)
T ss_dssp T-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred h-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5 33 889999998888776431 1 1222 222221 12345568888888888765433 33322 3
Q ss_pred HHHHHHHH----cCC-chH------HHHHHHHHHHcc-CC---------------------Ch--HHHHHHHHHHHHHHc
Q 002235 244 IKIIISLL----NAP-STA------VIYECAGTLVSL-SS---------------------AP--TAIRAAANTYSQLLL 288 (949)
Q Consensus 244 i~~L~~lL----~s~-s~a------V~~Eaa~~l~~l-~~---------------------~~--~~l~~~a~~li~lll 288 (949)
++.+...+ ++. ++. ..++|...+..- .. .+ ...+.+...+.+++-
T Consensus 614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 693 (963)
T 2x19_B 614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLS 693 (963)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 33333332 222 222 234444443322 21 11 012222222222221
Q ss_pred c-CCchHHHHHHHHHHHHHHhhChhhHHHHHHhh----eeccCC-CCHHHHHHHHHHHHhhcCCC----cHHHHHHHHHH
Q 002235 289 S-QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDV----LRALNS-PNLDIRRKTLDIVLELITPR----NINEVVLMLKK 358 (949)
Q Consensus 289 ~-~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~i----l~~L~d-~d~~Ir~~aL~lL~~l~~~~----Nv~~Iv~~L~k 358 (949)
. ..++.+.-.+.+.+..+....+.-+.++...+ +..+.. +...+-...=.++...+... .+..+++.+..
T Consensus 694 ~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~ 773 (963)
T 2x19_B 694 KWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTS 773 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 1 23556777777777776654433233322222 212211 22222222112222112222 34444444443
Q ss_pred HHHHhccCCccCCHHHHHHHHHHHHHhHccCccc-------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhC
Q 002235 359 EVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEV-------ASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMN 426 (949)
Q Consensus 359 el~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~-------~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~ 426 (949)
.+......+.+..++.+.....-++.+...+|.. ...+++.++..|+.....+...+..++.+++...
T Consensus 774 ~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 774 VTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 3221111111235889999999999888776643 5678888888888766677778889999988654
No 85
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.92 E-value=1 Score=58.26 Aligned_cols=384 Identities=13% Similarity=0.084 Sum_probs=195.5
Q ss_pred CCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCC-------chhhHHHHHHHHHH
Q 002235 66 EDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLN-------ETEIIEPLIPSVLQ 138 (949)
Q Consensus 66 ~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~-------~~el~~~l~~~I~~ 138 (949)
.|...|+-+.-+++.+.+. |+ ....++-.|. -.+.++.+|-.|+..|-+.. .++-.+.+-..+.+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p~-----~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~ 96 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-CP-----ICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVME 96 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CT-----THHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-ch-----HHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 4666788888888887543 22 1333444443 34667889988886665432 23333444444444
Q ss_pred hcc-------CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHH---HHccCCChhHHHHHHHHHHhcchhh------
Q 002235 139 NLQ-------HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEK---VLSTEQDPSAKRNAFLMLFTCDQDR------ 202 (949)
Q Consensus 139 ~L~-------d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~---~L~~d~d~~v~~~Al~~L~~i~~~~------ 202 (949)
.+. +..++||.+++.++..|.+. ..| .+|++.+.. ++ . .++.....++..|..+..+-
T Consensus 97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~-d~p---~~Wp~ll~~L~~~~-~-~~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 97 LIANGTLNILEEENHIKDALSRIVVEMIKR-EWP---QHWPDMLIELDTLS-K-QGETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHSSCCTTSSCHHHHHHHHHHHHHHHHH-HST---TTCTTHHHHHHHHH-H-TCHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHH-hCc---ccchHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHHccccch
Confidence 442 15699999999999999883 234 345544433 33 2 24555556666666554320
Q ss_pred ---HHH---------------HHHHHHhhc-C---------------ccChhHHHHHHHHHHHhhhcCch-h----HHHH
Q 002235 203 ---AIN---------------YLLTHVDRV-S---------------EWGELLQMVVLELIRKVCRTNKG-E----KGKY 243 (949)
Q Consensus 203 ---ai~---------------~L~~~l~~i-~---------------~~~p~~q~~il~ll~~~~~~~p~-~----~~~l 243 (949)
... .+...+++. . ..++-....+++.+..+..--|- . ...+
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~l 250 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKL 250 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchH
Confidence 001 111111110 0 01122344556666554332221 1 1236
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHcc---CCChHH----HHH----HHHHHHHHHc-cC----C--chHHHHHHHHHHHH
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSL---SSAPTA----IRA----AANTYSQLLL-SQ----S--DNNVKLIVLDRLNE 305 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l---~~~~~~----l~~----~a~~li~lll-~~----~--d~nvr~iaL~~L~~ 305 (949)
++.+..++.. +.++-.|+.+|..+ ...+.. +.. ....+++... .+ . |.++.--.-+.+..
T Consensus 251 l~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~ 328 (1204)
T 3a6p_A 251 LEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCA 328 (1204)
T ss_dssp HHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 6666666553 33444455544444 322322 110 1123344332 11 1 12221111122222
Q ss_pred HH-------h-----hChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCC------cHHHHHHHHHHHH----HH-
Q 002235 306 LR-------S-----SHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPR------NINEVVLMLKKEV----VK- 362 (949)
Q Consensus 306 l~-------~-----~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~------Nv~~Iv~~L~kel----~~- 362 (949)
+. . ..+..+..++..++.+..+++..|...+++.-..+.... -...++..|..-+ .+
T Consensus 329 lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~ 408 (1204)
T 3a6p_A 329 LGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKM 408 (1204)
T ss_dssp HHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 21 1 144556777888888889999999999998777554432 1334444444333 11
Q ss_pred -hccCC-----------ccCC-------HHHHHHHHHHHHHhHccCcccH-HHHHHHHHHHHhCC---C-----------
Q 002235 363 -TQSGE-----------LEKN-------GEYRQMLIQAIHSCAIKFPEVA-STVVHLLMDFLGDS---N----------- 408 (949)
Q Consensus 363 -~~~~~-----------~d~~-------~e~r~~lv~aI~~la~kf~~~~-~~~l~~L~~lL~~~---~----------- 408 (949)
|-..+ .|.+ .+||+.+...+..++..+|... ..+.+.+.+.+... +
T Consensus 409 ~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~ 488 (1204)
T 3a6p_A 409 GFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTG 488 (1204)
T ss_dssp CCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC---------------
T ss_pred cCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 11100 1111 2689999999999999988765 33444454444431 0
Q ss_pred ----------cccHHH-HHHHHHHHHHhC------cccHHHHHHHHHHHhc--ccchHHHHHHHhhhcccCCCCCC
Q 002235 409 ----------VASAID-VIIFVREIIEMN------PKLRVSIITRLLDNFY--QIRAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 409 ----------~~v~~e-~i~~l~~ii~~~------p~~~~~~l~~L~~~l~--~i~~~~v~~~~lwiLGEy~~~~~ 465 (949)
.....| .+.++..+++.. ++.-..++..|+..+- ..++|.++.+.+-++|.|+....
T Consensus 489 ~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~ 564 (1204)
T 3a6p_A 489 EGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT 564 (1204)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG
T ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh
Confidence 011122 233344443322 3333345667777653 34578898888888887776654
No 86
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.91 E-value=0.00073 Score=71.36 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=124.9
Q ss_pred cCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCC
Q 002235 105 LQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD 184 (949)
Q Consensus 105 L~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d 184 (949)
++|+++.+|..|.+.|. ++ .+.+++.|+++.||..|+.. + .+ +.+..+ ..|.|
T Consensus 59 l~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~------L--~~-------~~L~~l-l~D~d 111 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYR------L--PR-------EQLSAL-MFDED 111 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTT------S--CS-------GGGGGT-TTCSC
T ss_pred hcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHH------C--CH-------HHHHHH-HcCCC
Confidence 48999999999999763 22 35678899999999999953 2 12 234443 48999
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHH
Q 002235 185 PSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAG 264 (949)
Q Consensus 185 ~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~ 264 (949)
+.|+..+...| .++ . |..+ ....+++.+..+.+- + .+ +.+..+++..++.|+.+++.
T Consensus 112 ~~VR~~aA~~l---~~~-~---L~~L---~~D~d~~VR~~aA~~---l---~~-------~~l~~l~~D~d~~VR~~aa~ 168 (244)
T 1lrv_A 112 REVRITVADRL---PLE-Q---LEQM---AADRDYLVRAYVVQR---I---PP-------GRLFRFMRDEDRQVRKLVAK 168 (244)
T ss_dssp HHHHHHHHHHS---CTG-G---GGGG---TTCSSHHHHHHHHHH---S---CG-------GGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHH-H---HHHH---HcCCCHHHHHHHHHh---c---CH-------HHHHHHHcCCCHHHHHHHHH
Confidence 99999887643 222 1 1111 346677777777662 2 11 34567788889999999999
Q ss_pred HHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhc
Q 002235 265 TLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELI 344 (949)
Q Consensus 265 ~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~ 344 (949)
.+ . + .++..+++++++.||..+...+ -+ ..+..++.|++..||..+..-+.
T Consensus 169 ~l---~--~--------~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D~d~~VR~~aa~~l~--- 219 (244)
T 1lrv_A 169 RL---P--E--------ESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHDPDWTVRLAAVEHAS--- 219 (244)
T ss_dssp HS---C--G--------GGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGCSSHHHHHHHHHHSC---
T ss_pred cC---C--H--------HHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcCCCHHHHHHHHHcCC---
Confidence 72 1 1 2344567899999999999864 11 23566789999999999988642
Q ss_pred CCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHH
Q 002235 345 TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIH 383 (949)
Q Consensus 345 ~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~ 383 (949)
. ..| ..| . |.+..+|..+..++|
T Consensus 220 ----~----~~L-~~L----~---D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ----L----EAL-REL----D---EPDPEVRLAIAGRLG 242 (244)
T ss_dssp ----H----HHH-HHC----C---CCCHHHHHHHHCCC-
T ss_pred ----H----HHH-HHc----c---CCCHHHHHHHHHHhC
Confidence 1 212 222 2 678889888877654
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.75 E-value=0.018 Score=59.26 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=93.9
Q ss_pred CchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHH
Q 002235 52 PQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPE-MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIE 130 (949)
Q Consensus 52 s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e-~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~ 130 (949)
..+|..+|+ +..++|-. +..-+++++-..=.+.++-++ ..-+.++++.=+.++|+..+--|.-.+++++.-+..+
T Consensus 74 e~~Ld~iI~-llk~~dEk---val~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~ 149 (265)
T 3b2a_A 74 ERHLDVFIN-ALSQENEK---VTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK 149 (265)
T ss_dssp HHHHHHHHH-TCCSTTHH---HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH
T ss_pred HHHHHHHHH-HHhccchh---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH
Confidence 467778887 54444422 221222222111123333344 3567788887778888888888888888887777778
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcc
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~ 199 (949)
-+...+-+.+.+++++|+-.|+-++..|...+.++.++.+..+.+..+| +..|+-++--|+.+|.++.
T Consensus 150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL-~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLL-QNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHH-TCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877777663355666776666666666 4458888777777776653
No 88
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=96.57 E-value=0.057 Score=57.20 Aligned_cols=201 Identities=10% Similarity=0.146 Sum_probs=126.8
Q ss_pred EEEEEEEecceeEEEEEEEecChhhhcceEEEEeecC-CeEEeecCCc-ceeCCCCeeEEEEEEEEecC-CcceeeeeEE
Q 002235 730 AEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMG-DLKLVERPQN-YTLAPESSKQIKANIKVSST-ETGVIFGNIV 806 (949)
Q Consensus 730 ~ea~v~v~~~~ivld~~v~N~t~~tLqNv~vel~t~g-~l~~~~~p~~-~~l~p~~~~~i~~~~kv~s~-e~g~ifg~i~ 806 (949)
+++-..=.+..|.+++.++|++...+.+..+.+.... +|.....++. ..|.|+++.++.+-+....+ .++-.--++-
T Consensus 46 I~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~~~~~~~~~p~~~LQ 125 (258)
T 2g30_A 46 ISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQ 125 (258)
T ss_dssp EEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEEEEESCSCBCCCSSTTEEE
T ss_pred EEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCCCcEEEEEeeecCCcccCCCCCchhe
Confidence 3444444478899999999999999999999986532 2444432222 34899998887776655321 1110001111
Q ss_pred EecCCccccceEEecceeecccccccc-ccCChhhhHHhhcccCcCcEE--EeeccCCCHHHHHHHHHHHcCCeecCCCC
Q 002235 807 YETSNVLERTVVVLNDIHIDIMDYISP-AVCTDAAFRTMWAEFEWENKV--AVNTVIQDEKEFLDHIIKSTNMKCLTAPS 883 (949)
Q Consensus 807 y~~~~~~~~~~~~lndi~i~i~DyI~p-~~~~~~~Fr~~W~efewEnk~--~v~~~~~~l~~~l~~li~~tnm~~l~~~~ 883 (949)
.-..+..+ ...++ +.+.+.-++.| ..++.++|.++|.++.-+|+. .+.....+. +.+..-++.-|...+....
T Consensus 126 VAIKtn~~--vfYF~-~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~~~~~~~-~~i~~kL~~~nif~Va~r~ 201 (258)
T 2g30_A 126 VAVKNNID--VFYFS-CLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNA-DTVSSKLQNNNVYTIAKRN 201 (258)
T ss_dssp EEEECSSC--EEEEE-EECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEEEEETTCCCCH-HHHHHHHHHTTCEEEEEEE
T ss_pred eeeecCCc--eEEEE-eecCHHHhcCCcCccCHHHHHHHHhhCCCccceeEecccCcCCH-HHHHHHHHHCCeEEEEeec
Confidence 11222222 33464 67887778888 789999999999999876643 343333444 5555555666888775432
Q ss_pred ccCCCchHHHHHhhcccccCceEEEEEEEEEecCCceEEEEEEeeCChhHHHhhhhhh
Q 002235 884 ALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKI 941 (949)
Q Consensus 884 ~~~~~~~~~~~nL~~~s~~ge~al~n~s~~~~~~~~v~g~~riRs~~q~ia~slg~~i 941 (949)
.++.. .+.+++|+.-|.-+|+.+.+..+ ++ ..++.+|++...++--+..-+
T Consensus 202 -~~~q~---~ly~S~kt~n~i~vL~el~~~~~--~~-~v~l~vks~~~~i~~li~~~~ 252 (258)
T 2g30_A 202 -VEGQD---MLYQSLKLTNGIWILAELRIQPG--NP-NYTLSLKCRAPEVSQYIYQVY 252 (258)
T ss_dssp -ETTEE---EEEEEEEBTTSCEEEEEEEECSS--CS-SEEEEEEESSGGGHHHHHHHH
T ss_pred -CCCCc---eEEEEEEccCCcEEEEEEEEccC--CC-cEEEEEecCCchHHHHHHHHH
Confidence 23332 56778888888889988766542 22 366999999988776554433
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.55 E-value=0.19 Score=63.31 Aligned_cols=307 Identities=12% Similarity=0.135 Sum_probs=170.8
Q ss_pred CCHHHHHHHHHHhhcCCc------------------hhhHHHHHHHHHHhccCCCh---------------HHHHHHHHH
Q 002235 108 PNEYIRGVTLRFLCRLNE------------------TEIIEPLIPSVLQNLQHRHP---------------YIRRNAILA 154 (949)
Q Consensus 108 ~N~~iR~~ALr~L~~I~~------------------~el~~~l~~~I~~~L~d~~p---------------yVRk~A~la 154 (949)
.++-++..|+.+++.+.+ ..+++.+.+.+.+.+.-++. ..||.|..+
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 467888999888766532 12333344444444422211 478888888
Q ss_pred HHHHhcCCCCcccccchHHHHHHHHcc----CCChhHHHHHHHHHHhcchh------hHHHHHHHHHhhcC--ccChhHH
Q 002235 155 VMAIYKLPQGEQLLVDAPEMIEKVLST----EQDPSAKRNAFLMLFTCDQD------RAINYLLTHVDRVS--EWGELLQ 222 (949)
Q Consensus 155 l~ki~~l~~~~~li~~~~e~l~~~L~~----d~d~~v~~~Al~~L~~i~~~------~ai~~L~~~l~~i~--~~~p~~q 222 (949)
+..++.. ....+++...+.+...|.. ..+...+-+|+.+|..+... ..+..+...+.++. ..+|..+
T Consensus 445 l~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr 523 (971)
T 2x1g_F 445 FMYCYDV-LNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLL 523 (971)
T ss_dssp HHHHHTT-CTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHH
Confidence 8888883 2334445445555555522 25677788888888877432 13445555555555 2478889
Q ss_pred HHHHHHHHHhhhc---CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCC-ChH----HHHHHHHHHHHHHccC-Cch
Q 002235 223 MVVLELIRKVCRT---NKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSS-APT----AIRAAANTYSQLLLSQ-SDN 293 (949)
Q Consensus 223 ~~il~ll~~~~~~---~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~-~~~----~l~~~a~~li~lll~~-~d~ 293 (949)
...+.++++|+.- +|.....+++.|...|. +.|.-.|+.++..+.. ... .+..+...+.+++-+. -+.
T Consensus 524 ~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~ 600 (971)
T 2x1g_F 524 GTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN 600 (971)
T ss_dssp HHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCCh
Confidence 9999999998753 45556777777777773 6688888888877642 122 2223334444544332 367
Q ss_pred HHHHHHHHHHHHHHhhCh---------hhHHHHHHhheeccCCC--CHHHHHH---HHHHHHhhc---CC----------
Q 002235 294 NVKLIVLDRLNELRSSHR---------DIMVDLIMDVLRALNSP--NLDIRRK---TLDIVLELI---TP---------- 346 (949)
Q Consensus 294 nvr~iaL~~L~~l~~~~p---------~~l~~~~~~il~~L~d~--d~~Ir~~---aL~lL~~l~---~~---------- 346 (949)
..+..+++.+..++..-| .++.+....+..++..+ +..-+.. .++.|..+. ..
T Consensus 601 ~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~ 680 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQP 680 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccccc
Confidence 899999999999876543 22233333333333333 3323333 333333321 11
Q ss_pred --Cc----HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC----cccHHHHHHHHHHHHhCCCcccHHHHH
Q 002235 347 --RN----INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF----PEVASTVVHLLMDFLGDSNVASAIDVI 416 (949)
Q Consensus 347 --~N----v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf----~~~~~~~l~~L~~lL~~~~~~v~~e~i 416 (949)
.. ++.+++.+.+-+..+ ..+.++...+...++.++..+ .+..+.+++.|+..+.... . ..++
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~-----~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~--~-~~~l 752 (971)
T 2x1g_F 681 IVQPVLLVMQRTMPIFKRIAEMW-----VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC--C-APTL 752 (971)
T ss_dssp ---CCHHHHHTTHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C--C-HHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC--c-hHHH
Confidence 11 223444333322222 235688888888888876543 3334455555555444322 1 3466
Q ss_pred HHHHHHHHhC
Q 002235 417 IFVREIIEMN 426 (949)
Q Consensus 417 ~~l~~ii~~~ 426 (949)
..+..+++..
T Consensus 753 ~l~~~~i~~~ 762 (971)
T 2x1g_F 753 EISKTAIVMF 762 (971)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 90
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.54 E-value=0.1 Score=54.51 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHccCCC-hH---HHHH--HHHHHHHHHccCCchHHHHHHHHHHHHHHhhC---hhhH
Q 002235 244 IKIIISLLNAPSTAVIYECAGTLVSLSSA-PT---AIRA--AANTYSQLLLSQSDNNVKLIVLDRLNELRSSH---RDIM 314 (949)
Q Consensus 244 i~~L~~lL~s~s~aV~~Eaa~~l~~l~~~-~~---~l~~--~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~---p~~l 314 (949)
++.|..+|.+.++.|+.+|+.+|.+++.. ++ .+.. ++..++++|.++++..++-.+...|..|+... +.+.
T Consensus 54 Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~ 133 (233)
T 3tt9_A 54 ILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI 133 (233)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 46777888888888888888888888642 32 1111 34567777755567788887777777776432 2233
Q ss_pred HHHHHhheeccC----------------CCCHHHHHHHHHHHHhhcCCC-cHH-------HHHHHHHHHHHHhccCCccC
Q 002235 315 VDLIMDVLRALN----------------SPNLDIRRKTLDIVLELITPR-NIN-------EVVLMLKKEVVKTQSGELEK 370 (949)
Q Consensus 315 ~~~~~~il~~L~----------------d~d~~Ir~~aL~lL~~l~~~~-Nv~-------~Iv~~L~kel~~~~~~~~d~ 370 (949)
+..+..+...+. ..+..++..|...|..+.... ... .+|+.|...+...+.. .+.
T Consensus 134 ~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~-~~~ 212 (233)
T 3tt9_A 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIAD-YQP 212 (233)
T ss_dssp HHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHT-TCT
T ss_pred hccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhc-ccc
Confidence 333344443331 136788888888888886532 111 1333343333332210 022
Q ss_pred CHHHHHHHHHHHHHhHc
Q 002235 371 NGEYRQMLIQAIHSCAI 387 (949)
Q Consensus 371 ~~e~r~~lv~aI~~la~ 387 (949)
++.-+...+-+++.++-
T Consensus 213 ~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 213 DDKATENCVCILHNLSY 229 (233)
T ss_dssp TCHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 34455556666665553
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.33 E-value=0.014 Score=62.03 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=116.5
Q ss_pred CCchHHHHHHHHHHHHHHhhChhhHHHHHHhhee----ccCCCCHHHHHHHHHHHHhhcC----------CCcHHHHHHH
Q 002235 290 QSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLR----ALNSPNLDIRRKTLDIVLELIT----------PRNINEVVLM 355 (949)
Q Consensus 290 ~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~----~L~d~d~~Ir~~aL~lL~~l~~----------~~Nv~~Iv~~ 355 (949)
++|..-+..|++.|.+.....|..+.....-+++ -+.|.|..+-.++|++|-.+.+ +.-+..++..
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5688889999999999888788665444333333 1348899999999999987632 2224556665
Q ss_pred HHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHH-
Q 002235 356 LKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSII- 434 (949)
Q Consensus 356 L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l- 434 (949)
|.. -.. |..+.+|..+-..+..++.-||+ ..+++.+++-++..+.....+++..+..++..+.-....++
T Consensus 137 Lve----KlG---d~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~ 207 (266)
T 2of3_A 137 LLL----KTG---EAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS 207 (266)
T ss_dssp HHH----GGG---CSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC
T ss_pred HHH----HhC---CChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 542 223 56678999888888888876665 36888899999988888999999999999986543344578
Q ss_pred --HHHHHHhcccchHHHHHHHhhhccc
Q 002235 435 --TRLLDNFYQIRAARVCTCALWIIGE 459 (949)
Q Consensus 435 --~~L~~~l~~i~~~~v~~~~lwiLGE 459 (949)
..++..+.| .++.++-+++-++.|
T Consensus 208 ~~~~ia~ll~D-~d~~VR~aAl~~lve 233 (266)
T 2of3_A 208 VEKTVAPFVGD-KDVNVRNAAINVLVA 233 (266)
T ss_dssp HHHHHGGGGGC-SSHHHHHHHHHHHHH
T ss_pred chHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 888888887 667777777766665
No 92
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.30 E-value=1.7 Score=49.39 Aligned_cols=275 Identities=13% Similarity=0.189 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHHhhcC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCC
Q 002235 107 HPNEYIRGVTLRFLCRL--NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQD 184 (949)
Q Consensus 107 ~~N~~iR~~ALr~L~~I--~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d 184 (949)
..++-..-+|-.++.+. .-|++.+.-+.+...+.+|.++-||+.|+-.+..+.+ . +.+++..+++-++|. ..|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck--~--~~i~kiaDvL~QlLq-tdd 113 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT--G--ENLPRVADILTQLLQ-TDD 113 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC--T--TCHHHHHHHHHHHTT-CCC
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh--h--hhhhhHHHHHHHHHh-ccc
Confidence 44577777888888876 3699999999999999999999999999999999988 4 668888899999774 434
Q ss_pred h---hHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhc------CchhHHHHHHHHHHHHcCCc
Q 002235 185 P---SAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRT------NKGEKGKYIKIIISLLNAPS 255 (949)
Q Consensus 185 ~---~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~------~p~~~~~li~~L~~lL~s~s 255 (949)
+ .++.+++..|..+++...+.-| ++++...++.....+|++|...... ..+.-..+...+..+|+.-+
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl~~l---f~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTLGGL---FSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH---HHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHhcChHHHHHHH---HHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 4 4677888888888777654443 4444335688888899998754432 12222344566666664433
Q ss_pred hHHHHHHHHHHH---ccCCChHHHHHHHHHHHHHH-----ccCCchHH--HHHHHHHHHHHHh------hChhhHHHHHH
Q 002235 256 TAVIYECAGTLV---SLSSAPTAIRAAANTYSQLL-----LSQSDNNV--KLIVLDRLNELRS------SHRDIMVDLIM 319 (949)
Q Consensus 256 ~aV~~Eaa~~l~---~l~~~~~~l~~~a~~li~ll-----l~~~d~nv--r~iaL~~L~~l~~------~~p~~l~~~~~ 319 (949)
. .-|.-.-.++ .+...++..+.++.-+.... ...+|+.. |++ ..+..-.. .....|.-+..
T Consensus 191 ~-~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI--~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 191 G-EEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLL--QCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp H-HHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHH--HHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHH--HHHHHHHHHhccCCChHHHHHHHHH
Confidence 2 2222222222 22222222222222222110 01123221 111 11111000 11233333344
Q ss_pred hheeccCCCCHH-----HHHHHHHHHHhhc---C-CCcHHHHHHHHHHHHHHhccC---Cc-----------cCCHHHHH
Q 002235 320 DVLRALNSPNLD-----IRRKTLDIVLELI---T-PRNINEVVLMLKKEVVKTQSG---EL-----------EKNGEYRQ 376 (949)
Q Consensus 320 ~il~~L~d~d~~-----Ir~~aL~lL~~l~---~-~~Nv~~Iv~~L~kel~~~~~~---~~-----------d~~~e~r~ 376 (949)
.++..+++=+.. .+..-|.++..++ + .++....++.+...|..||.. +. +-+-.+..
T Consensus 268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vE 347 (507)
T 3u0r_A 268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVE 347 (507)
T ss_dssp HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHH
T ss_pred hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHH
Confidence 455555443222 5666666666553 3 566777777777677777651 00 00234567
Q ss_pred HHHHHHHHhHccCccc
Q 002235 377 MLIQAIHSCAIKFPEV 392 (949)
Q Consensus 377 ~lv~aI~~la~kf~~~ 392 (949)
-+.-+.|++|.+.|..
T Consensus 348 CLLy~fH~L~~k~P~~ 363 (507)
T 3u0r_A 348 CLLYSFHQLGRKLPDF 363 (507)
T ss_dssp HHHHHHHHHHTTCTHH
T ss_pred HHHHHHHHHhhhChhh
Confidence 8888899999998864
No 93
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.15 E-value=2.2 Score=54.11 Aligned_cols=383 Identities=13% Similarity=0.131 Sum_probs=178.8
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCc-------hh----hHHHHHHHHH
Q 002235 69 TIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNE-------TE----IIEPLIPSVL 137 (949)
Q Consensus 69 ~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~-------~e----l~~~l~~~I~ 137 (949)
..|+-+.-+++.+.+. | +....+-.+.. .+.++.+|-.|+..|-+... ++ +-+.++..+.
T Consensus 31 ~~r~~A~~~L~~~q~s-p------~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~ 101 (1023)
T 4hat_C 31 VQQKQAQEILTKFQDN-P------DAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMII 101 (1023)
T ss_dssp HHHHHHHHHHHHHHHC-T------TGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-c------cHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 4677777777777443 3 33333333332 24567888777777655321 22 2233344443
Q ss_pred HhccCC-----ChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHc-cCCChhHHHHHHHHHHhcchh----------
Q 002235 138 QNLQHR-----HPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLS-TEQDPSAKRNAFLMLFTCDQD---------- 201 (949)
Q Consensus 138 ~~L~d~-----~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~-~d~d~~v~~~Al~~L~~i~~~---------- 201 (949)
+...++ .++||.+.+.++..|++. ..|+ +|++.+..++. ...++.....++..|..+..+
T Consensus 102 ~~~~~~~~i~~~~~i~nKLa~~la~I~~~-~~p~---~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~ 177 (1023)
T 4hat_C 102 SMCQDDEVFKTQKNLINKSDLTLVQILKQ-EWPQ---NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMT 177 (1023)
T ss_dssp HHHHSHHHHHHCHHHHHHHHHHHHHHHHH-HTTT---TCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSC
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHH-hChh---hchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 333232 589999999999999884 3454 35444333221 123344444445544332211
Q ss_pred --h------H--------HHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchh---HHHHHHHHH-HHHcCCchHHHHH
Q 002235 202 --R------A--------INYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGE---KGKYIKIII-SLLNAPSTAVIYE 261 (949)
Q Consensus 202 --~------a--------i~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~---~~~li~~L~-~lL~s~s~aV~~E 261 (949)
+ + +..+..++.. ..++-....+++.+..+..--|-. ...+++.+. .+|. ++.++-.
T Consensus 178 ~~r~~~lk~~l~~~~~~I~~ll~~iL~~--~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~ 253 (1023)
T 4hat_C 178 QAKALHLKNSMSKEFEQIFKLCFQVLEQ--GASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAI 253 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHH
Confidence 0 0 0111122221 123334566788888776532211 134666666 6664 4556666
Q ss_pred HHHHHHccCC----Ch-HHHH----HHHHHHHHHH---------------c--cCCchHHHHHHHHHHHHHHhhChhhHH
Q 002235 262 CAGTLVSLSS----AP-TAIR----AAANTYSQLL---------------L--SQSDNNVKLIVLDRLNELRSSHRDIMV 315 (949)
Q Consensus 262 aa~~l~~l~~----~~-~~l~----~~a~~li~ll---------------l--~~~d~nvr~iaL~~L~~l~~~~p~~l~ 315 (949)
|+.++..+-. .+ .... .....++..+ . +..|.+.---.-+.+..+...|...+.
T Consensus 254 A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~ 333 (1023)
T 4hat_C 254 TLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLE 333 (1023)
T ss_dssp HHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655422 11 0111 1111111111 1 111222211122222233333333222
Q ss_pred ----------HHHHhheeccCCCCHHHHHHHHHHHHhhcC----C----CcHHHHHHHHHHHHHHhccCC-------cc-
Q 002235 316 ----------DLIMDVLRALNSPNLDIRRKTLDIVLELIT----P----RNINEVVLMLKKEVVKTQSGE-------LE- 369 (949)
Q Consensus 316 ----------~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~----~----~Nv~~Iv~~L~kel~~~~~~~-------~d- 369 (949)
.....++.|-..+|..|-+.+++.=+.++. + .-...++..|..-+.+.+... .|
T Consensus 334 ~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~ 413 (1023)
T 4hat_C 334 SDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDE 413 (1023)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTT
T ss_pred CCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 112234556667788888888876444432 1 223444444444443322210 00
Q ss_pred ----------CC--HHHHHHHHHHHHHhHccCcccHHHHHHHHHHHH----hCCC-c-ccHHHHHHHHHHHHHhCccc-H
Q 002235 370 ----------KN--GEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFL----GDSN-V-ASAIDVIIFVREIIEMNPKL-R 430 (949)
Q Consensus 370 ----------~~--~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL----~~~~-~-~v~~e~i~~l~~ii~~~p~~-~ 430 (949)
.+ ..||..= +.+..++.-.+. .+++.+++.| ...+ + ...+.++.+++.|.+.-.+- -
T Consensus 414 ~~~~~e~~~d~d~~~~f~~~R-d~L~~l~~l~~~---~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e 489 (1023)
T 4hat_C 414 GEIVREFVKESDTIQLYKSER-EVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE 489 (1023)
T ss_dssp SCEEECSSCCGGGHHHHHHHH-HHHHHHHHHCHH---HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred ccHHHHhccchHHHHHHHHHH-HHHHHHhccCHH---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhH
Confidence 01 2344332 555555543332 4455555544 3322 1 23444677888876542221 1
Q ss_pred ----HHHHHHHHHHhcc--cchHH--HHHHHhhhcccCCCCCCcHHHHHH
Q 002235 431 ----VSIITRLLDNFYQ--IRAAR--VCTCALWIIGEYCQSLSEVENGIA 472 (949)
Q Consensus 431 ----~~~l~~L~~~l~~--i~~~~--v~~~~lwiLGEy~~~~~~~~~~~~ 472 (949)
..++..|+...++ .++++ ++..++|++|.|++.....++++.
T Consensus 490 ~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~ 539 (1023)
T 4hat_C 490 KRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR 539 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 1355555555442 11244 455788999999998764444444
No 94
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.11 E-value=0.83 Score=54.10 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=159.0
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCcccccc--hHHHHHHHHccC-CChhHHHHHHHHHHhc-chhh--------------
Q 002235 141 QHRHPYIRRNAILAVMAIYKLPQGEQLLVD--APEMIEKVLSTE-QDPSAKRNAFLMLFTC-DQDR-------------- 202 (949)
Q Consensus 141 ~d~~pyVRk~A~lal~ki~~l~~~~~li~~--~~e~l~~~L~~d-~d~~v~~~Al~~L~~i-~~~~-------------- 202 (949)
...-+-=||.|+.++..+.+ .++..+-. .+.++.. |.+| .|..+...++..|..+ +++.
T Consensus 32 ~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~~l~~li~~-L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~ 108 (651)
T 3grl_A 32 SSTLLDDRRNAVRALKSLSK--KYRLEVGIQAMEHLIHV-LQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED 108 (651)
T ss_dssp HCCSHHHHHHHHHHHHHTTT--TTTTHHHHHTHHHHHHH-HHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred hccchhHHHHHHHHHHHHHH--HhHHHhhhhhHHHHHHH-HhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence 34566778999999988888 77765432 3345543 5444 5666677777666432 2110
Q ss_pred -HH----------HHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHH-------HHHHHHHHHcCCchHHHHHHHH
Q 002235 203 -AI----------NYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGK-------YIKIIISLLNAPSTAVIYECAG 264 (949)
Q Consensus 203 -ai----------~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~-------li~~L~~lL~s~s~aV~~Eaa~ 264 (949)
+. +.+..+++-+...+.|.....+++|..++...|...+. =+..|..+|...+..|+-||+-
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 01 11222333345678899999999999999887773322 2467788899999999999999
Q ss_pred HHHccCCChHHHHHH------HHHHHHHHccCCc---hHHHHHHHHHHHHHHhhCh---hhHHH--HHHhheeccCCCCH
Q 002235 265 TLVSLSSAPTAIRAA------ANTYSQLLLSQSD---NNVKLIVLDRLNELRSSHR---DIMVD--LIMDVLRALNSPNL 330 (949)
Q Consensus 265 ~l~~l~~~~~~l~~~------a~~li~lll~~~d---~nvr~iaL~~L~~l~~~~p---~~l~~--~~~~il~~L~d~d~ 330 (949)
.|..++.....++.+ ...++.++-.+.. ..+--=.|..|..|.+.+| ..|.+ +...+..+|..++.
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 999998765555432 3455565543322 1222223344445555554 34433 44445545542221
Q ss_pred -------HHH--HHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHH
Q 002235 331 -------DIR--RKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLM 401 (949)
Q Consensus 331 -------~Ir--~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~ 401 (949)
-++ ..+++++--++.+.|-..-. ..-+ +++.+ ...+..|+
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t------------------~~nQ----~~~~~---------~g~l~~Ll 317 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGAT------------------SSCQ----KAMFQ---------CGLLQQLC 317 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHH------------------HHHH----HHHHH---------TTHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCC------------------HHHH----HHHHH---------CCCHHHHH
Confidence 111 11344444444443311000 0000 00100 11344445
Q ss_pred HHHhCCC--cccHHHHHHHHHHHHHhCcccHHH--------------HHHHHHHHhcccchHHHHHHHhhhcccCCCCCC
Q 002235 402 DFLGDSN--VASAIDVIIFVREIIEMNPKLRVS--------------IITRLLDNFYQIRAARVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 402 ~lL~~~~--~~v~~e~i~~l~~ii~~~p~~~~~--------------~l~~L~~~l~~i~~~~v~~~~lwiLGEy~~~~~ 465 (949)
+++...+ ..+..+++..+.++++.+|..++. ++.-|...+.+.....++.+++.++.-|...-+
T Consensus 318 ~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 318 TILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 5544332 234445566666666655554443 333355555555556788888888888766554
Q ss_pred cH
Q 002235 466 EV 467 (949)
Q Consensus 466 ~~ 467 (949)
+.
T Consensus 398 ~~ 399 (651)
T 3grl_A 398 KG 399 (651)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 95
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.86 E-value=0.49 Score=60.30 Aligned_cols=177 Identities=12% Similarity=0.143 Sum_probs=100.9
Q ss_pred CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcC-----CC-CcccccchHHHHHHHHccCCChhHHHHHHHHHHh
Q 002235 124 NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKL-----PQ-GEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFT 197 (949)
Q Consensus 124 ~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l-----~~-~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~ 197 (949)
-++++++.+...++.--...+|++|+.|+++++.+... +. .+++++.+.+.+.+.+ ...|...+.-++.+|..
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~-~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSS-DRAKEEEIVLALKALGN 466 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH-hcCChHHHHHHHHHhhc
Confidence 45566666655444433447899999999998776541 01 1233444445554544 44566666677777777
Q ss_pred cchhhHHHHHHHHHhhc---C-ccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHccCC
Q 002235 198 CDQDRAINYLLTHVDRV---S-EWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLN--APSTAVIYECAGTLVSLSS 271 (949)
Q Consensus 198 i~~~~ai~~L~~~l~~i---~-~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~--s~s~aV~~Eaa~~l~~l~~ 271 (949)
+.....++.|..++... . ....-.+..++..|+++....|. .+.+.+.++.. ...+.|+..|...++...|
T Consensus 467 ~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P 543 (1056)
T 1lsh_A 467 AGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---KVQEIVLPIFLNVAIKSELRIRSCIVFFESKP 543 (1056)
T ss_dssp HTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC
T ss_pred cCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCc
Confidence 76555566666555422 1 11223456677777777654443 34455666663 3455677777777776655
Q ss_pred ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 272 APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 272 ~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
....++. +...+..+++..|+-.+...|..++.
T Consensus 544 ~~~~l~~----ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 544 SVALVSM----VAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp CHHHHHH----HHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHH----HHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 4433433 33334455666666666666666554
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.24 Score=52.72 Aligned_cols=168 Identities=13% Similarity=0.179 Sum_probs=101.3
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhcCCCCccc---------ccchHHHHHHHHccCCChhHHHHHHHHHHhcchh-----
Q 002235 136 VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL---------LVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD----- 201 (949)
Q Consensus 136 I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l---------i~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~----- 201 (949)
+..-|.|++--.|+.|+..+.+++. ..+.. +.+....+.+++ .|+|..|+..|+.+|..+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~--~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFR--NSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHH--TC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHh--hCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 4468999999999999999999987 43322 112345677766 899999999998887765321
Q ss_pred ----hH---H-HHHHHHHhh-cCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC--
Q 002235 202 ----RA---I-NYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-- 270 (949)
Q Consensus 202 ----~a---i-~~L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~-- 270 (949)
.. . ..+..++.. ++...+-.....++.+..++... .....+++.+...+.+.++-|+.+|+..|..+-
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 00 1 122233333 34444544555556555554321 112345677778888888888888888776541
Q ss_pred --C---ChH-HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 271 --S---APT-AIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 271 --~---~~~-~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
. .+. .++.+...+.. +++++|++||-.|...+..+..
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k-~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQ-LAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHH-HHTCSSHHHHHHHHHHHHHHHT
T ss_pred hCCCcCCchhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHH
Confidence 1 111 22222222223 3467777777777777777654
No 97
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.72 E-value=2.1 Score=47.73 Aligned_cols=92 Identities=12% Similarity=0.221 Sum_probs=75.3
Q ss_pred HHHHHHHHhhcC---CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHH
Q 002235 112 IRGVTLRFLCRL---NETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAK 188 (949)
Q Consensus 112 iR~~ALr~L~~I---~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~ 188 (949)
.+-..|+-+-.+ ++|++++.+++.|.+...|++..|||-.+-=+...+. ..+++.+...+.+..+| .|.|+.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~~~~l~~L~~LL-~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELLLKLIANLNMLL-RDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH-TCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 466667666664 6899999999999999999999999999999999999 88888888777777655 78999999
Q ss_pred HHHHHHHHhcchhhHHHHH
Q 002235 189 RNAFLMLFTCDQDRAINYL 207 (949)
Q Consensus 189 ~~Al~~L~~i~~~~ai~~L 207 (949)
..++.+...+.+- +++++
T Consensus 118 K~~I~~~tslYpl-~f~~i 135 (386)
T 3o2t_A 118 KKAILTMTQLYKV-ALQWM 135 (386)
T ss_dssp HHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHH-HHHHH
Confidence 9988877666544 34444
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.55 E-value=7.2 Score=49.43 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=72.8
Q ss_pred CcccHHHHHHHh---cCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCC
Q 002235 15 TPAIANEIKEAL---EGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVL 91 (949)
Q Consensus 15 ~~~~~~eir~~L---~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~ 91 (949)
.+..++++.+.+ -+++...|.+|-+.|-.+... .+.-.....++. .+++...|..+-..++..-+.+= ..+-
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p~~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W-~~l~ 85 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDAWQKADQILQ---FSTNPQSKFIALSILDKLITRKW-KLLP 85 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-TTGGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTG-GGSC
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-chHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhC-ccCC
Confidence 345566555444 356666666776666544333 233334444443 36788899999888887533210 1111
Q ss_pred chH-HH----HHHHHHhhcCCC-----CHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 002235 92 PEM-IL----ICQNLRNNLQHP-----NEYIRGVTLRFLCRLNE---TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAI 158 (949)
Q Consensus 92 ~e~-iL----v~NsL~KDL~~~-----N~~iR~~ALr~L~~I~~---~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki 158 (949)
+|- .- +.+.+..--.++ ++++|.-.-.+++.|.. |+-=+.+++.+.+++. .++..+..++..+..+
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHH
Confidence 221 12 223333322222 46777665555555432 2223445666666665 5565666666665555
Q ss_pred h
Q 002235 159 Y 159 (949)
Q Consensus 159 ~ 159 (949)
.
T Consensus 165 ~ 165 (1049)
T 3m1i_C 165 S 165 (1049)
T ss_dssp H
T ss_pred H
Confidence 4
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.52 E-value=0.092 Score=62.11 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=110.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHH-HHhheeccCC--CCHHHHHHHHHHHHhhcC------------
Q 002235 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDL-IMDVLRALNS--PNLDIRRKTLDIVLELIT------------ 345 (949)
Q Consensus 281 ~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~-~~~il~~L~d--~d~~Ir~~aL~lL~~l~~------------ 345 (949)
..++..+-+..-.+=|-.|+..|..+++.+|..+..+ ...++..|.+ +|.++-+.+|++|+.+.+
T Consensus 24 ~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~ 103 (651)
T 3grl_A 24 QKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENST 103 (651)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccccccc
Confidence 3444444444445556666666666655555554433 2333333322 355555556666654333
Q ss_pred -----------------CCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH-H------HHHHHHH
Q 002235 346 -----------------PRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA-S------TVVHLLM 401 (949)
Q Consensus 346 -----------------~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~-~------~~l~~L~ 401 (949)
++|+..+++.| . +.+...|..+++.+..++..-|... + .-+..|+
T Consensus 104 ~~~~~~~~~~~d~f~~~~~~i~~Ll~lL--------~---~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 104 RQSEDLGSQFTEIFIKQQENVTLLLSLL--------E---EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp ----CHHHHHHHHHHHSTHHHHHHHHHT--------T---CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCccHHHHHHHh--------c---CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 33333333211 1 3467788899999999998777632 2 3456899
Q ss_pred HHHhCCCcccHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHhcc---cchHHHHHHHhhhcccCCCCCCcHHHHHH
Q 002235 402 DFLGDSNVASAIDVIIFVREIIEMNPKLRV-----SIITRLLDNFYQ---IRAARVCTCALWIIGEYCQSLSEVENGIA 472 (949)
Q Consensus 402 ~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~-----~~l~~L~~~l~~---i~~~~v~~~~lwiLGEy~~~~~~~~~~~~ 472 (949)
++|.+..+.+++|++..|.++.+.+++.+. .+..+|+..+.. ++.+.+..-|+-++..-...-+.-+.+++
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999999998764 457788888754 33345666666666554443333344443
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.22 Score=52.98 Aligned_cols=176 Identities=11% Similarity=0.085 Sum_probs=116.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhCCCC----------CCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhc-CCCCCC
Q 002235 22 IKEALEGNDVPAKVDAMKKAIMLLLNGET----------LPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKT-DAKGRV 90 (949)
Q Consensus 22 ir~~L~s~~~~~k~~aL~kli~l~~~G~d----------~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~-~~d~~l 90 (949)
+-..|.|.+=..|.+++..+.-+...... +..+ ...++-.+...|...-..+.-++..+... .+.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~-~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRD-PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSC-THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45789999999999999999887765321 1122 23333355677777776666666665432 111111
Q ss_pred Cc----hHHHHHHHHH-hhcCCCCHHHHHHHHHHhhcCCchh-hHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCC
Q 002235 91 LP----EMILICQNLR-NNLQHPNEYIRGVTLRFLCRLNETE-IIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG 164 (949)
Q Consensus 91 ~~----e~iLv~NsL~-KDL~~~N~~iR~~ALr~L~~I~~~e-l~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~ 164 (949)
+. .+-.++..|. |-|.++.+-+|..|+.++..+.... ..+.+...+...+.|++|-||..++..+.+++.. ++
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~-fg 171 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA-FG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH-HT
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-hC
Confidence 11 1223344444 6689999999999998887664332 2355678888999999999999999999998873 34
Q ss_pred ccccc------chHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002235 165 EQLLV------DAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (949)
Q Consensus 165 ~~li~------~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~ 200 (949)
+..++ .+.+.+.++| .|.|+.|+.+|..++.++..
T Consensus 172 ~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 172 LTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp TTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHT
T ss_pred CCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHH
Confidence 44332 1123344544 89999999999998877643
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.49 E-value=0.76 Score=47.60 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHH-HccCCchHHHHHHHHHHHHHHh-hChhhHHHH
Q 002235 240 KGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQL-LLSQSDNNVKLIVLDRLNELRS-SHRDIMVDL 317 (949)
Q Consensus 240 ~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~l-ll~~~d~nvr~iaL~~L~~l~~-~~p~~l~~~ 317 (949)
...++.+...+.++....|++-|+..|..+.+.+ .+-++++- +...+..-||+.+-..+..+.. .+|+..-+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~-----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~- 142 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDK-----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP- 142 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSH-----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH-
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcH-----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH-
Confidence 4567788888899999999999999998883222 23444554 6667778899999999999885 78874222
Q ss_pred HHhheeccCCCCHHHHHHHHHHHHh----hcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccH
Q 002235 318 IMDVLRALNSPNLDIRRKTLDIVLE----LITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVA 393 (949)
Q Consensus 318 ~~~il~~L~d~d~~Ir~~aL~lL~~----l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~ 393 (949)
.+..-..|+|.-|||.|++-+.- ..-..+-+.++..|. ...+ |.+..+|+.+-.+|..++...|+
T Consensus 143 --~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~----~L~~---D~s~yVrKSVan~LrD~SK~~Pd-- 211 (240)
T 3l9t_A 143 --IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIA----DLKE---DVSEYVRKSVGNALRDISKKFPD-- 211 (240)
T ss_dssp --HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHH----TTTT---CSCHHHHHHHHHHHHHHHTTCHH--
T ss_pred --HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHH----HhcC---ChHHHHHHHHHHHHHHHhhhCHH--
Confidence 24556789999999999998643 223455555554332 2222 55667777788888888877665
Q ss_pred HHHHHHHH
Q 002235 394 STVVHLLM 401 (949)
Q Consensus 394 ~~~l~~L~ 401 (949)
|+.+++-
T Consensus 212 -~V~~~~~ 218 (240)
T 3l9t_A 212 -LVKIELK 218 (240)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 5555544
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.45 E-value=6.3 Score=49.28 Aligned_cols=245 Identities=10% Similarity=0.165 Sum_probs=154.0
Q ss_pred HHHHHHHhhcCCCCHH-HHHHHHHHhhcCC------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccc
Q 002235 96 LICQNLRNNLQHPNEY-IRGVTLRFLCRLN------ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLL 168 (949)
Q Consensus 96 Lv~NsL~KDL~~~N~~-iR~~ALr~L~~I~------~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li 168 (949)
=+..++.|-+.+.+.- =-..++..||+-. +|-++ ++.|.+..+..|+.+-||++|-.|+..+++. ..|.-+
T Consensus 54 ~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~-~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNA-VNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-SCGGGH
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-CCHHHH
Confidence 3567888888776433 2234555666322 12222 2468899999999999999999999998885 566666
Q ss_pred cchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH--H-HHHHHHH---hh-cCccChhHHHHHHHHHHHhhhc-CchhH
Q 002235 169 VDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA--I-NYLLTHV---DR-VSEWGELLQMVVLELIRKVCRT-NKGEK 240 (949)
Q Consensus 169 ~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a--i-~~L~~~l---~~-i~~~~p~~q~~il~ll~~~~~~-~p~~~ 240 (949)
+...+.+...|........+..|+.++..+...-+ + ..|..++ .. +.+.-|=..-...+.+.++|.. +-...
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 55444444446455568899999998887653321 1 1222222 22 2344455577778888888763 33456
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHccCCC----hHHHHHHHHHHHHHHccCCchHHHH---HHHHHHHHHHhhChhh
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSA----PTAIRAAANTYSQLLLSQSDNNVKL---IVLDRLNELRSSHRDI 313 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~----~~~l~~~a~~li~lll~~~d~nvr~---iaL~~L~~l~~~~p~~ 313 (949)
+.+++.|..++.+.+. +=||+..|..-+-. ...+ ++..+++..=+.++...+|- ++++.+.+|. .+|..
T Consensus 212 ~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv-~~~~~ 287 (986)
T 2iw3_A 212 ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV-EDPQV 287 (986)
T ss_dssp GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC-CCHHH
T ss_pred hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhc-CCHHH
Confidence 7788999999988855 78888888665422 2234 35566666655666666654 3445555544 36766
Q ss_pred HHHHHHhheec-------cCCCC-HHHHHHHHHHHHhhcCC
Q 002235 314 MVDLIMDVLRA-------LNSPN-LDIRRKTLDIVLELITP 346 (949)
Q Consensus 314 l~~~~~~il~~-------L~d~d-~~Ir~~aL~lL~~l~~~ 346 (949)
+.++...++.- ..||. +.+..+|+++|.+.++.
T Consensus 288 ~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 288 IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 66665554333 23322 56668899999877554
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.35 E-value=3.9 Score=46.51 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHH
Q 002235 218 GELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKL 297 (949)
Q Consensus 218 ~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~ 297 (949)
++=.....-++|.+|....|+....-++.+..+....+..|+.+|++.|..+... ..+...+..|.++|. ..|+.-.-
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLq-tdd~~E~~ 118 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQ-TDDSAEFN 118 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTT-CCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHh-ccchHHHH
Confidence 4556677788999999999999999999999999999999999999999999766 567789999999885 55666677
Q ss_pred HHHHHHHHHHhhChh-hHHHHHHhheeccCCCCHHHHHHHHHHHH
Q 002235 298 IVLDRLNELRSSHRD-IMVDLIMDVLRALNSPNLDIRRKTLDIVL 341 (949)
Q Consensus 298 iaL~~L~~l~~~~p~-~l~~~~~~il~~L~d~d~~Ir~~aL~lL~ 341 (949)
++=..|..+...+|. .+.....+|.. ++..+|.++|..|.
T Consensus 119 ~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 119 LVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHH
Confidence 777888888888876 45554444443 47899999999885
No 104
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.29 E-value=1.7 Score=54.44 Aligned_cols=241 Identities=15% Similarity=0.183 Sum_probs=151.5
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCC-------cccccchHHHHHHHHccCCChhHHHHHHHHHHh---cc
Q 002235 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQG-------EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFT---CD 199 (949)
Q Consensus 130 ~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~-------~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~---i~ 199 (949)
..+...+++.+.++.+- -.|+.++..++. .. |-+++-++.++.. ..|++..|+.+|-.++.. ..
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~~--~~dk~~~v~~aa~~~~~~~~~~~ 126 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIAN--QSNLSPSVEPYIVQLVPAICTN--AGNKDKEIQSVASETLISIVNAV 126 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTC--TTTCCTTTHHHHHTTHHHHHHH--TTCSSHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHH--hcCCCCCcccchHHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHhC
Confidence 46788899999997555 889999999996 33 2223323344433 378888888877655443 33
Q ss_pred hhhHHHH-HHHHHhhcCccChh-HHHHHHHHHHHhhhcCchhH----HHHHHHHHHHHcCCchHHHHHHHHHHHcc---C
Q 002235 200 QDRAINY-LLTHVDRVSEWGEL-LQMVVLELIRKVCRTNKGEK----GKYIKIIISLLNAPSTAVIYECAGTLVSL---S 270 (949)
Q Consensus 200 ~~~ai~~-L~~~l~~i~~~~p~-~q~~il~ll~~~~~~~p~~~----~~li~~L~~lL~s~s~aV~~Eaa~~l~~l---~ 270 (949)
+..|+.. |..+++.+....-| ..+..++++.+++...|... ..+++.+...+...-+-|.-.|..++..+ -
T Consensus 127 ~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 127 NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 3344433 33444445444467 46777999999887666543 45677888888888888887766666543 2
Q ss_pred CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh------ChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhh-
Q 002235 271 SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS------HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLEL- 343 (949)
Q Consensus 271 ~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~------~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l- 343 (949)
.+. .+......+++.+. .++. +=+++..|... ....++-.++-+.+.|++....++|++.-++-+|
T Consensus 207 ~n~-d~~~~~~~~~~~~~-~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 207 DNK-DIERFIPSLIQCIA-DPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp CCT-TTGGGHHHHHHHHH-CTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred CCc-chhhhHHHHHHHhc-Chhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence 222 22223333444443 3332 34445555442 3334455566678889999999999987665554
Q ss_pred --c-CCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHh
Q 002235 344 --I-TPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSC 385 (949)
Q Consensus 344 --~-~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~l 385 (949)
+ ++.-+...+..|+-.+.+-.+. -.++|.|..+-+|+..+
T Consensus 280 ~lv~~~~~~~~f~~~l~p~~~~~~~~--~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 280 KLVEDPQVIAPFLGKLLPGLKSNFAT--IADPEAREVTLRALKTL 322 (986)
T ss_dssp TTCCCHHHHHHHHTTTHHHHHHHTTT--CCSHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHhhhhhhhhhHHHHHhhc--cCCHHHHHHHHHHHHHH
Confidence 4 4666777777777777764431 34788888887777665
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.27 E-value=0.029 Score=59.04 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=120.2
Q ss_pred hcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcc
Q 002235 62 VLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQ 141 (949)
Q Consensus 62 l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~ 141 (949)
+..+++...|+.+--. +. + ..+.+-++|+++.||..|...|.. +.+...+.
T Consensus 58 ll~d~~~~VR~~AA~~------l~------~------~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~ 108 (244)
T 1lrv_A 58 YLADPFWERRAIAVRY------SP------V------EALTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMF 108 (244)
T ss_dssp GTTCSSHHHHHHHHTT------SC------G------GGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTT
T ss_pred HhcCCCHHHHHHHHHh------CC------H------HHHHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHc
Confidence 4567777777665332 11 1 235677899999999999987541 34677899
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhH
Q 002235 142 HRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELL 221 (949)
Q Consensus 142 d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~ 221 (949)
|+++.||..|+..+ . ++ .+.. |.+|+|+.|+..+..- +.++. +..+ ....++..
T Consensus 109 D~d~~VR~~aA~~l----~----~~-------~L~~-L~~D~d~~VR~~aA~~---l~~~~----l~~l---~~D~d~~V 162 (244)
T 1lrv_A 109 DEDREVRITVADRL----P----LE-------QLEQ-MAADRDYLVRAYVVQR---IPPGR----LFRF---MRDEDRQV 162 (244)
T ss_dssp CSCHHHHHHHHHHS----C----TG-------GGGG-GTTCSSHHHHHHHHHH---SCGGG----GGGT---TTCSCHHH
T ss_pred CCCHHHHHHHHHhC----C----HH-------HHHH-HHcCCCHHHHHHHHHh---cCHHH----HHHH---HcCCCHHH
Confidence 99999999988742 1 21 2334 4589999999988763 22221 1111 23556666
Q ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHH
Q 002235 222 QMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLD 301 (949)
Q Consensus 222 q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~ 301 (949)
...+..- . .+ +.+..+++..+..|+.+++..+ . +. .+..|+.++++.||..+..
T Consensus 163 R~~aa~~---l---~~-------~ll~~ll~D~d~~VR~aaa~~l---~--~~--------~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 163 RKLVAKR---L---PE-------ESLGLMTQDPEPEVRRIVASRL---R--GD--------DLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp HHHHHHH---S---CG-------GGGGGSTTCSSHHHHHHHHHHC---C--GG--------GGGGGGGCSSHHHHHHHHH
T ss_pred HHHHHHc---C---CH-------HHHHHHHcCCCHHHHHHHHHhC---C--HH--------HHHHHHcCCCHHHHHHHHH
Confidence 6655553 1 11 4555778889999999999874 1 11 2334568999999999999
Q ss_pred HHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHH
Q 002235 302 RLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLD 338 (949)
Q Consensus 302 ~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~ 338 (949)
.+. + ..+..+ .|++..||..+.+
T Consensus 217 ~l~------~-------~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 217 HAS------L-------EALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp HSC------H-------HHHHHC-CCCCHHHHHHHHC
T ss_pred cCC------H-------HHHHHc-cCCCHHHHHHHHH
Confidence 864 1 123334 9999999998865
No 106
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.15 E-value=0.46 Score=60.55 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=112.3
Q ss_pred CCcccHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCC----CCcchhHHHHHHHHHHhh-c-CCC
Q 002235 14 GTPAIANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPS----EDHTIQKLLLLYLEIIDK-T-DAK 87 (949)
Q Consensus 14 ~~~~~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s----~d~~lKrL~YL~l~~~~~-~-~~d 87 (949)
++.+.+.-|++.+.+++.... ++..-+......=.+-....-.+..++ .+ ++..+++.++|.+..+.. . ..+
T Consensus 353 GT~~a~~~i~~~i~~~~l~~~-ea~~~l~~~~~~~~Pt~e~l~~~~~l~-~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 353 ATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESLSYARELL-NTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp CSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHH-TCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHhhccCCCCHHHHHHHHHHH-hCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 344566778888887654321 132222222222245444444444422 33 455688888887755322 1 111
Q ss_pred CCCCch-HHHHHHHHHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHhcCCC
Q 002235 88 GRVLPE-MILICQNLRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQN---LQHRHPYIRRNAILAVMAIYKLPQ 163 (949)
Q Consensus 88 ~~l~~e-~iLv~NsL~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~---L~d~~pyVRk~A~lal~ki~~l~~ 163 (949)
+...++ +--+.+.+.+-+...++.-+-.+|++|++++.|+.++.+.+.+... -.+....||..|+.|+.++-. .
T Consensus 431 ~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~--~ 508 (1056)
T 1lsh_A 431 VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK--R 508 (1056)
T ss_dssp SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG--T
T ss_pred CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh--h
Confidence 122234 3345567777777778999999999999999999877776654321 123355799999999998877 6
Q ss_pred CcccccchHHHHHH-HHccCCChhHHHHHHHHHHhcchhh
Q 002235 164 GEQLLVDAPEMIEK-VLSTEQDPSAKRNAFLMLFTCDQDR 202 (949)
Q Consensus 164 ~~~li~~~~e~l~~-~L~~d~d~~v~~~Al~~L~~i~~~~ 202 (949)
.|..+. +++.. +.....++.++..|+.+|.+.+|..
T Consensus 509 ~p~~v~---~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~ 545 (1056)
T 1lsh_A 509 DPRKVQ---EIVLPIFLNVAIKSELRIRSCIVFFESKPSV 545 (1056)
T ss_dssp CHHHHH---HHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH
T ss_pred chHHHH---HHHHHHhcCCCCChHHHHHHHHHHHHHCcCH
Confidence 665443 33333 2335678899999999999888864
No 107
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.76 E-value=1.3 Score=55.91 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHhhcCC-----chhhHHHHHHHHHH--hccCCChHHHHHHHHHHHHHhcCCCCc-ccccchHHHHHH
Q 002235 106 QHPNEYIRGVTLRFLCRLN-----ETEIIEPLIPSVLQ--NLQHRHPYIRRNAILAVMAIYKLPQGE-QLLVDAPEMIEK 177 (949)
Q Consensus 106 ~~~N~~iR~~ALr~L~~I~-----~~el~~~l~~~I~~--~L~d~~pyVRk~A~lal~ki~~l~~~~-~li~~~~e~l~~ 177 (949)
++++|.||..+..++++.. .|+.++++.+.+.. ++.|+++.||.+|+.++.++.+ ..+ .+.+.+.+++..
T Consensus 505 ~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~--~~~~~L~~~~~~il~~ 582 (980)
T 3ibv_A 505 RHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK--SIKKQVVNYTESSLAM 582 (980)
T ss_dssp TCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH--HTTTTCSSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH--HhhHHhhhHHHHHHHH
Confidence 3789999999999999974 57899999999999 9999999999999999999998 444 455555566655
No 108
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.57 E-value=5.4 Score=41.92 Aligned_cols=155 Identities=13% Similarity=0.225 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHh--------hcCCCc-
Q 002235 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLE--------LITPRN- 348 (949)
Q Consensus 278 ~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~--------l~~~~N- 348 (949)
.....++.+ ..+++..+|..+.+-|.+....++.+...++..+..+++|+|+.|.++++..... +++..+
T Consensus 53 ~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~ 131 (257)
T 3gs3_A 53 EFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEP 131 (257)
T ss_dssp HHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344444442 3445566666666666666666676666666666666677777777777654432 333333
Q ss_pred ------HHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccC-------------------cc------------
Q 002235 349 ------INEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKF-------------------PE------------ 391 (949)
Q Consensus 349 ------v~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf-------------------~~------------ 391 (949)
.=+-+..++..+....+ ..+.-.|..+++-+..+..-+ |+
T Consensus 132 ~~~~~~~W~~m~~lK~~Il~~~~---s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~ 208 (257)
T 3gs3_A 132 GDSAEQAWNILSLIKAQILDMID---NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQE 208 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGG---SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHc---cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHH
Confidence 11234456666555444 245677777777776544211 11
Q ss_pred cHHHHHHHHHHHHhCCC--cccHHHHHHHHHHHHHhCcccHHHHHHH
Q 002235 392 VASTVVHLLMDFLGDSN--VASAIDVIIFVREIIEMNPKLRVSIITR 436 (949)
Q Consensus 392 ~~~~~l~~L~~lL~~~~--~~v~~e~i~~l~~ii~~~p~~~~~~l~~ 436 (949)
.+...++.|++++.... +.....++..+..|+++.|..-..++..
T Consensus 209 Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~a 255 (257)
T 3gs3_A 209 EGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEA 255 (257)
T ss_dssp HHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHHh
Confidence 24678888888876542 2234456788888899889877666654
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.41 E-value=0.28 Score=51.09 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcCCCCH--HHHHHHHHHhhcCC--chh----hH-HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc
Q 002235 95 ILICQNLRNNLQHPNE--YIRGVTLRFLCRLN--ETE----II-EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE 165 (949)
Q Consensus 95 iLv~NsL~KDL~~~N~--~iR~~ALr~L~~I~--~~e----l~-~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~ 165 (949)
-|.+-.+.+-|+++++ -++..|..+|.++. +++ +. ...+|.+.+.|.+.++.|++.|+-|+..+.. .++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~--~~~ 84 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDN 84 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCH
Confidence 3555777888898888 77777766666654 222 22 2357999999999999999999999999977 444
Q ss_pred cc---ccc--hHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002235 166 QL---LVD--APEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (949)
Q Consensus 166 ~l---i~~--~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~ 201 (949)
+- +-+ ..+.+-++|....++.++.+|..+|+.+...
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 32 211 2344445563457889999999999887644
No 110
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.24 E-value=3.7 Score=51.96 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=65.0
Q ss_pred HHHhhcCC--CCHHHHHHHHHHhhcCCc-------hhhHHHHHHHHHHhccC-----CChHHHHHHHHHHHHHhc-CCCC
Q 002235 100 NLRNNLQH--PNEYIRGVTLRFLCRLNE-------TEIIEPLIPSVLQNLQH-----RHPYIRRNAILAVMAIYK-LPQG 164 (949)
Q Consensus 100 sL~KDL~~--~N~~iR~~ALr~L~~I~~-------~el~~~l~~~I~~~L~d-----~~pyVRk~A~lal~ki~~-l~~~ 164 (949)
.+.+-+.+ ++-..|-.|+=++|.|.. ...++.+++.+...+.+ +++.||.+++.++++... +...
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444 456888888888888742 24566777888877764 677888899899887654 0023
Q ss_pred cccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh
Q 002235 165 EQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD 201 (949)
Q Consensus 165 ~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~ 201 (949)
|+.++...+.+-.++ .++++.|+.+|..+|..++.+
T Consensus 535 ~~~L~~vl~~L~~~l-~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 535 WNFLRTVILKLFEFM-HETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHH
Confidence 333332222222333 677889999999998887765
No 111
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.02 E-value=6.1 Score=41.56 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=74.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhc---CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHH
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCR---LNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMI 175 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~---I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l 175 (949)
.-+...-.++++ .+-..|+-+-. -.+|++++.+.+.+.....|++..|||-.+-=+...++ ..+++.++..+.+
T Consensus 19 ~lln~A~~~~~~-~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~--~k~~l~~~~l~~L 95 (257)
T 3gs3_A 19 DWCNELVIASPS-TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK--VKVELLPHVINVV 95 (257)
T ss_dssp HHHHHHTTCCHH-HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHHhhhcCcH-HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 333333334443 56566655444 25799999999999998889999999999988888898 8888888877777
Q ss_pred HHHHccCCChhHHHHHHHHHHhcchh
Q 002235 176 EKVLSTEQDPSAKRNAFLMLFTCDQD 201 (949)
Q Consensus 176 ~~~L~~d~d~~v~~~Al~~L~~i~~~ 201 (949)
..+| .|.|+.|...|+.....+-|-
T Consensus 96 ~~Ll-~d~d~~V~K~~I~~~~~iY~~ 120 (257)
T 3gs3_A 96 SMLL-RDNSAQVIKRVIQACGSIYKN 120 (257)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 6655 789999999998877665543
No 112
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.71 E-value=0.49 Score=50.20 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=65.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHH---ccCCChhHHHHHHHHHHhcc----------
Q 002235 133 IPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVL---STEQDPSAKRNAFLMLFTCD---------- 199 (949)
Q Consensus 133 ~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L---~~d~d~~v~~~Al~~L~~i~---------- 199 (949)
-+.+...+-|++.--|-+|+-.+.+... ..++.+-...+++-+-+ ..|+|+.|...++.+|..+-
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3455666777777777777777777666 44432222223322211 24778777777776665531
Q ss_pred -hhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHcc
Q 002235 200 -QDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSL 269 (949)
Q Consensus 200 -~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l 269 (949)
...+-.++..++..++..-+-..-.+-++++.++... -..++.+.+..-++|+|.-++-||...+..+
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~--~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV--GPLKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 1112233344444443332222333333333222211 1124455555566666666666666655544
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.43 E-value=2.1 Score=44.23 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=90.5
Q ss_pred HHhhcCCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHH-hccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHH
Q 002235 101 LRNNLQHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQ-NLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVL 179 (949)
Q Consensus 101 L~KDL~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~-~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L 179 (949)
...=.+|+..-+|..|...|+.. . . .+.+.+.++. ...|.+-.||-.++.++..+..- .+|+. ..+.+...+
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~-~~pe~---~l~~~~~W~ 148 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK-IEYKK---ALPIIDEWL 148 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH-HCTTT---THHHHHHHH
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh-cCHHH---HHHHHHHHh
Confidence 34444778889999999999988 3 3 3778889988 77899999999999999998831 45542 345666654
Q ss_pred ccCCChhHHHHHHHHHHhcc--h--hhHHHHHHHHHhh-cCccChhHHHHHHHHHHHhhhcCchh
Q 002235 180 STEQDPSAKRNAFLMLFTCD--Q--DRAINYLLTHVDR-VSEWGELLQMVVLELIRKVCRTNKGE 239 (949)
Q Consensus 180 ~~d~d~~v~~~Al~~L~~i~--~--~~ai~~L~~~l~~-i~~~~p~~q~~il~ll~~~~~~~p~~ 239 (949)
.|.|+-|++.|...+.--+ + ......+..++.. ..+.+.+.|-.+=.-|+.|++.+|..
T Consensus 149 -~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 149 -KSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp -HCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -cCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 8999999998876542100 0 0012223333433 24667778888888888888877753
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.87 E-value=17 Score=40.38 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHh-hhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC-CChHHHHHHHHHHHHHHccCCchHHHHH
Q 002235 221 LQMVVLELIRKV-CRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS-SAPTAIRAAANTYSQLLLSQSDNNVKLI 298 (949)
Q Consensus 221 ~q~~il~ll~~~-~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~-~~~~~l~~~a~~li~lll~~~d~nvr~i 298 (949)
-++..|+=++.+ ...+|+....|++-+.++-...+..|+..++..|-... ...+.+-.+...+..++ .+.|+++.--
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL-~d~d~~V~K~ 119 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLL-RDENVNVVKK 119 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-TCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 466666666664 33577777777777777666667777777777665432 12333333444443333 4556555444
Q ss_pred HHHHHHHHHhhChhhHHHHHHhheeccCCCCH-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHH
Q 002235 299 VLDRLNELRSSHRDIMVDLIMDVLRALNSPNL-DIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQM 377 (949)
Q Consensus 299 aL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~-~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~ 377 (949)
++.....+ ||.+|+-. | .+++. .-- +.-|+. +..++..+....+ ..+.-.|..
T Consensus 120 ~I~~~tsl---Ypl~f~~i------~-~~~~~~~~~------------e~~W~~-m~~lK~~Il~~~d---s~n~GVrl~ 173 (386)
T 3o2t_A 120 AILTMTQL---YKVALQWM------V-KSRVISELQ------------EACWDM-VSAMAGDIILLLD---SDNDGIRTH 173 (386)
T ss_dssp HHHHHHHH---HHHHHHHH------H-HC-CCCHHH------------HHHHHH-HHHHHHHHHHGGG---CSSHHHHHH
T ss_pred HHHHHHHH---HHHHHHHH------h-cCCCcchhH------------HHHHHH-HHHHHHHHHHHhc---cCCcchHHH
Confidence 44443332 45544321 1 11110 000 011111 2223333333322 123445555
Q ss_pred HHHHHHHhHccCc----------------------------------ccHHHHHHHHHHHHhCCC--cccHHHHHHHHHH
Q 002235 378 LIQAIHSCAIKFP----------------------------------EVASTVVHLLMDFLGDSN--VASAIDVIIFVRE 421 (949)
Q Consensus 378 lv~aI~~la~kf~----------------------------------~~~~~~l~~L~~lL~~~~--~~v~~e~i~~l~~ 421 (949)
+++-+..+..-+. ..+...++.|++++.... +.....++..+..
T Consensus 174 aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~ 253 (386)
T 3o2t_A 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLAN 253 (386)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHH
Confidence 5554444332111 124577888888887533 2233345677888
Q ss_pred HHHhCcccHHHHHHHHH
Q 002235 422 IIEMNPKLRVSIITRLL 438 (949)
Q Consensus 422 ii~~~p~~~~~~l~~L~ 438 (949)
|+++.|.....++.-|.
T Consensus 254 Iak~RP~~~~rIl~aL~ 270 (386)
T 3o2t_A 254 IARQRPMFMSEVIQAYE 270 (386)
T ss_dssp HHHHSGGGHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHH
Confidence 88888887766666664
No 115
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.70 E-value=50 Score=42.43 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=37.6
Q ss_pred HHHHhhcCCC--CHHHHHHHHHHhhcCCch-hhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 99 QNLRNNLQHP--NEYIRGVTLRFLCRLNET-EIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 99 NsL~KDL~~~--N~~iR~~ALr~L~~I~~~-el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
+.+.. +.+| ++-.|..|-..|-.+... +....+.-.+. -.+.+++||--|+..+-+..+
T Consensus 15 ~~l~~-~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~ 76 (1204)
T 3a6p_A 15 KAVTV-MMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVK 76 (1204)
T ss_dssp HHHHH-HHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHH
Confidence 34433 3344 677899999998887543 33332222221 256789999999999988765
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.18 E-value=22 Score=45.13 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=67.5
Q ss_pred HHHHHHh-hcCC---chhhHHHHHHHHHHhccCC-----ChHHHHHHHHHHHHHhc-CCCCcccccchHHHHHHHHccCC
Q 002235 114 GVTLRFL-CRLN---ETEIIEPLIPSVLQNLQHR-----HPYIRRNAILAVMAIYK-LPQGEQLLVDAPEMIEKVLSTEQ 183 (949)
Q Consensus 114 ~~ALr~L-~~I~---~~el~~~l~~~I~~~L~d~-----~pyVRk~A~lal~ki~~-l~~~~~li~~~~e~l~~~L~~d~ 183 (949)
..|++++ +.+. +...++.+++.+....+++ .+-||.+....+++.-+ +...+..++.....+-.++ .|+
T Consensus 500 ~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m-~~~ 578 (1073)
T 3gjx_A 500 CWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM-HET 578 (1073)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH-hcC
Confidence 3456666 3333 2256777888888777776 34555555556655322 0023333332222222334 688
Q ss_pred ChhHHHHHHHHHHhcchh---hH--------HHHHHHHHhh----cCccChhHHHHHHHHHHHhhhcCch
Q 002235 184 DPSAKRNAFLMLFTCDQD---RA--------INYLLTHVDR----VSEWGELLQMVVLELIRKVCRTNKG 238 (949)
Q Consensus 184 d~~v~~~Al~~L~~i~~~---~a--------i~~L~~~l~~----i~~~~p~~q~~il~ll~~~~~~~p~ 238 (949)
++.|+..|..+|..++.+ .- .+|+..+++. .....|-.+..+.+.++.+...-|.
T Consensus 579 ~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 899999998888776533 10 1244444432 1234555667777777776655443
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.02 E-value=4.9 Score=46.60 Aligned_cols=228 Identities=14% Similarity=0.131 Sum_probs=132.1
Q ss_pred CCCcchhHHHHHHHHHHhhcCCCC-----CCCchH---HHHHHHHHh--hcCCCCH--HHHHHHHHHhhcCC--chhhHH
Q 002235 65 SEDHTIQKLLLLYLEIIDKTDAKG-----RVLPEM---ILICQNLRN--NLQHPNE--YIRGVTLRFLCRLN--ETEIIE 130 (949)
Q Consensus 65 s~d~~lKrL~YL~l~~~~~~~~d~-----~l~~e~---iLv~NsL~K--DL~~~N~--~iR~~ALr~L~~I~--~~el~~ 130 (949)
+++=+.|.=+-+.+.++-+....| .+-.++ ++++=++-+ |.-+..- -||-.|-.+|+.+. .++ .+
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e-~~ 263 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP-ND 263 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS-CC
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCChh-HH
Confidence 666677777778777765554321 011132 233333332 4444322 45655555555541 122 22
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHH--
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLL-- 208 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~-- 208 (949)
.+ ..+.+.+.++.--||-.+++++--+..+ -.+ .+...+.+-..| .|.|--|+..|..+|..+.....++.+.
T Consensus 264 IL-~qLV~~l~~~~WEVRHGGLLGLKYL~DL--L~~-Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA~p~~l~~LL~i 338 (800)
T 3oc3_A 264 II-EQLVGFLDSGDWQVQFSGLIALGYLKEF--VED-KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFPITDSLDLVLEK 338 (800)
T ss_dssp HH-HHHTTGGGCSCHHHHHHHHHHHHHTGGG--CCC-HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSCCSSTHHHHHHH
T ss_pred HH-HHHHhhcCCCCeeehhhhHHHHHHHHHH--HHH-HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 22 2222455778899999999998765331 111 233334443434 8889999999999999987333344333
Q ss_pred --HHHhhcCccChhHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHH
Q 002235 209 --THVDRVSEWGELLQMVVLELIRKVCRTNKG--EKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYS 284 (949)
Q Consensus 209 --~~l~~i~~~~p~~q~~il~ll~~~~~~~p~--~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li 284 (949)
.++.+..+.++- --.++++|.+++...+. ....+++.|.++|+|+-++|+..+.+++..+. ....++-+.
T Consensus 339 LWd~L~~LDDLSAS-TgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-~~~~LRLIF---- 412 (800)
T 3oc3_A 339 CWKNIESEELISVS-KTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-EESIDFLVA---- 412 (800)
T ss_dssp HHHHHHTCCSCCTT-HHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-CHHHHHHHH----
T ss_pred HHHHhhhhcccchh-hHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-hhhHHHHHH----
Confidence 334433332222 46678888887653221 11267788999999999999999999998887 343444332
Q ss_pred HHHccCCchHHHHHHHHHHH
Q 002235 285 QLLLSQSDNNVKLIVLDRLN 304 (949)
Q Consensus 285 ~lll~~~d~nvr~iaL~~L~ 304 (949)
+.++=+++..++-.+++...
T Consensus 413 QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 413 EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHH
Confidence 22333566677777766653
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=83.65 E-value=5.1 Score=48.30 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=47.1
Q ss_pred HHhhcCCCCHHHHHHHHHHhhcCCch-hh-----HHHHH-HHHHHhccCCChHHHHHHHHHHHHHhc
Q 002235 101 LRNNLQHPNEYIRGVTLRFLCRLNET-EI-----IEPLI-PSVLQNLQHRHPYIRRNAILAVMAIYK 160 (949)
Q Consensus 101 L~KDL~~~N~~iR~~ALr~L~~I~~~-el-----~~~l~-~~I~~~L~d~~pyVRk~A~lal~ki~~ 160 (949)
+.+.|+|+++-.|..|+.+|++|... +. -+.++ +.|.++|.|+++-||..|+-|+..+..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 44569999999999999999998743 22 22233 446778999999999999999988765
No 119
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=80.69 E-value=30 Score=37.64 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=82.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHhh---------ChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCC--CcH
Q 002235 281 NTYSQLLLSQSDNNVKLIVLDRLNELRSS---------HRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITP--RNI 349 (949)
Q Consensus 281 ~~li~lll~~~d~nvr~iaL~~L~~l~~~---------~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~--~Nv 349 (949)
.++++.. .+.+.|..-.+|+.|.++... +|..++. +..++++.++.|.+.||++|..++.. .|.
T Consensus 163 ~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~----lyslv~s~~~~V~k~AL~LL~v~V~~se~~~ 237 (339)
T 3dad_A 163 SCLIRVG-AAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQW----LYTLCASLSRLVVKTALKLLLVFVEYSENNA 237 (339)
T ss_dssp HHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH----HHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHH-HhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHH----HHHHHcCccHHHHHHHHHHHHHHHccCcccc
Confidence 3455544 567899999999999988653 4444443 55566678999999999999887643 355
Q ss_pred HHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhC---CCcccHHHHHHHHHHHHHhC
Q 002235 350 NEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGD---SNVASAIDVIIFVREIIEMN 426 (949)
Q Consensus 350 ~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~---~~~~v~~e~i~~l~~ii~~~ 426 (949)
..+..... +.. -...-|+ +..|+..|.+ ....+...++..|-.++...
T Consensus 238 ~lv~~av~-----------------------~v~-~~~~~~p-----~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 238 PLFIRAVN-----------------------SVA-STTGAPP-----WANLVSILEEKNGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp HHHHHHHH-----------------------HHH-HHHCCCT-----THHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHH-----------------------Hhh-hccCCCc-----HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC
Confidence 54332221 110 0111112 4567777863 22334445666777777777
Q ss_pred cccHHHHHHHHHHHhcccchHHHHHHHhhhcc
Q 002235 427 PKLRVSIITRLLDNFYQIRAARVCTCALWIIG 458 (949)
Q Consensus 427 p~~~~~~l~~L~~~l~~i~~~~v~~~~lwiLG 458 (949)
|+... ...+++.++...-..+....+|-.|
T Consensus 289 pd~d~--~~di~d~Le~~gi~~~i~r~l~~~~ 318 (339)
T 3dad_A 289 PDQDS--FYDVTDALEQQGMEALVQRHLGTAG 318 (339)
T ss_dssp SSHHH--HHHHHHHHHHTTHHHHHHHHHSCTT
T ss_pred CChhH--HHHHHHHHHHccHHHHHHHHHhccC
Confidence 75322 3456666665444444444444444
No 120
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=80.51 E-value=6.8 Score=45.45 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHH
Q 002235 256 TAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRK 335 (949)
Q Consensus 256 ~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~ 335 (949)
..|+=.||+++..+..-|+.. .+...++. .+..+.+++|.-+|-.|..+...-.. +......++..|.|+|.+||..
T Consensus 242 APVRETaAQtLGaL~hLp~e~-~IL~qLV~-~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAV 318 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGPN-DIIEQLVG-FLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLL 318 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCSC-CHHHHHTT-GGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHH
T ss_pred eehHHHHHHHHHHHHhCChhH-HHHHHHHh-hcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHH
Confidence 358888888887763222222 23333332 23677899999887777766221111 4455556778899999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCccCCH--HHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHH
Q 002235 336 TLDIVLELITPRNINEVVLMLKKEVVKTQSGELEKNG--EYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAI 413 (949)
Q Consensus 336 aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~--e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~ 413 (949)
|.++|.-++.+..+..++..|-..|... + |-+. .-.-.++.++...... ....+..++.|..+|+..-..++.
T Consensus 319 AAetLiPIA~p~~l~~LL~iLWd~L~~L-D---DLSASTgSVMdLLAkL~s~p~~-a~~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 319 SAELLCHFPITDSLDLVLEKCWKNIESE-E---LISVSKTSNLSLLTKIYRENPE-LSIPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HHHHHTTSCCSSTHHHHHHHHHHHHHTC-C---SCCTTHHHHHHHHHHHHHHCTT-CCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred HHHHhhhhcchhhHHHHHHHHHHHhhhh-c---ccchhhHHHHHHHHHHHcCCcc-cccChHHHHHHHhhhcCCcHHHHH
Confidence 9999999998889999999888777654 2 2222 2222333333332211 111126677788888888877888
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHh
Q 002235 414 DVIIFVREIIEMNPKLRVSIITRLLDNF 441 (949)
Q Consensus 414 e~i~~l~~ii~~~p~~~~~~l~~L~~~l 441 (949)
.++..+..++ -..++..+.+.+
T Consensus 394 AVL~TL~tfL------~~~~LRLIFQNI 415 (800)
T 3oc3_A 394 SILNMVKNLS------EESIDFLVAEVV 415 (800)
T ss_dssp HHHHHTTTCC------CHHHHHHHHHHH
T ss_pred HHHHHHHHHH------hhhHHHHHHHHH
Confidence 7777766554 234566666643
No 121
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.62 E-value=26 Score=44.47 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=39.7
Q ss_pred HHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhCh
Q 002235 249 SLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHR 311 (949)
Q Consensus 249 ~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p 311 (949)
..+.++++..+-+|-..|-.+...|.....+ ..+|.++.++.+||.|+..|.....++-
T Consensus 35 ~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~----~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 35 NCLYHGEGAQQRMAQEVLTHLKEHPDAWTRV----DTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HTTTCSSHHHHHHHHHHHHTSSCCSCHHHHH----TCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCchHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 3344556778888888888887777655422 2334456689999999999988776543
No 122
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=74.78 E-value=4.4 Score=42.01 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=49.8
Q ss_pred cCCCCHHHHHHHHH----HhhcCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHH
Q 002235 105 LQHPNEYIRGVTLR----FLCRLN----ETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIE 176 (949)
Q Consensus 105 L~~~N~~iR~~ALr----~L~~I~----~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~ 176 (949)
+.|+|++.|-.|+- .|+... +..-.+.+...+...+.|++.||+|+..=++..+.+ .+|+.+.++.++-+
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk--~~~~~~~~al~~~~ 194 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI--SYVPLHEKAVEIAK 194 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHH
Confidence 35778888877777 545433 334556667777778888888888888888888887 77777766666555
Q ss_pred H
Q 002235 177 K 177 (949)
Q Consensus 177 ~ 177 (949)
.
T Consensus 195 ~ 195 (235)
T 1t06_A 195 E 195 (235)
T ss_dssp H
T ss_pred H
Confidence 5
No 123
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=71.39 E-value=6.1 Score=34.38 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred EEEecceeEEEEEEEecChhhh-cceEEEEeecCCeEEe--ecCCcceeCCCCeeEEEE
Q 002235 734 VTVHHYDIVLDVTVINRTKETL-QNLCLELATMGDLKLV--ERPQNYTLAPESSKQIKA 789 (949)
Q Consensus 734 v~v~~~~ivld~~v~N~t~~tL-qNv~vel~t~g~l~~~--~~p~~~~l~p~~~~~i~~ 789 (949)
++|.+.|=.|-|.+-|.|+..| -|++++|++.|+---+ -...++.++|.+.+..++
T Consensus 15 Itvs~rDnsL~F~lyNntn~~lpGnCtl~fs~~g~~ptv~si~mGPHEigik~~ke~~~ 73 (118)
T 2kzb_A 15 ITMNQRDNSLYFQLFNNTNSVLAGNCKLKFTDAGDKPTTQIIDMGPHEIGIKEYKEYRY 73 (118)
T ss_dssp EEEEEETTEEEEEEEECSSSCCCSSCEECCCSSSSSCCCCCEECCSCCCCTTCCEEEEE
T ss_pred EEEecCCCeEEEEEecCCceeccCccEEEEecCCCCceEEEEecCccccccCcceEEEE
Confidence 5788999999999999999998 8999999998872111 112333444444555554
No 124
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=71.10 E-value=37 Score=40.73 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHhhChhh---H-HH-HHHh-heeccCCCCHHHHHHHHHHHHhhcCCC
Q 002235 280 ANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDI---M-VD-LIMD-VLRALNSPNLDIRRKTLDIVLELITPR 347 (949)
Q Consensus 280 a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~---l-~~-~~~~-il~~L~d~d~~Ir~~aL~lL~~l~~~~ 347 (949)
+.++++.| +++|++.|..|+..|..|++ +|.. + .. -+.. +..+|.|++..||..|...|..|+-+.
T Consensus 36 i~Pll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 36 ILPVLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp THHHHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 44566654 56677777777777777764 3321 1 11 1112 345678888888888888887776543
No 125
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=67.54 E-value=2.8e+02 Score=35.69 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHH--
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLVSL--SSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD-- 316 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~~l--~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~-- 316 (949)
..++.....++++..+.|+-=++.....+ .-+.-.-+.+...++....+.++.++.- ||+.|..|+..+|..+.+
T Consensus 399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~-ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDT-ALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHH-HHHHHHHHHhcCHHHHhHHH
Confidence 46778888899999887654444332211 1122223456777777777777777766 999999999999998876
Q ss_pred -HHHhheeccCCCC-HHHHHHHHHHHHhhcC----C--CcH-HHHHHHHHHHHHHhccCCccCCHHHHHH
Q 002235 317 -LIMDVLRALNSPN-LDIRRKTLDIVLELIT----P--RNI-NEVVLMLKKEVVKTQSGELEKNGEYRQM 377 (949)
Q Consensus 317 -~~~~il~~L~d~d-~~Ir~~aL~lL~~l~~----~--~Nv-~~Iv~~L~kel~~~~~~~~d~~~e~r~~ 377 (949)
++.-|+.++++-+ ..||+ ..+++..++= + ..+ +++--.++|++.. .+.+||+.
T Consensus 478 ~~l~giLD~l~~l~~~QiRk-lf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~-------~~~~~Kri 539 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRK-IFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSS-------TVFKYKLI 539 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHH-HHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTC-------SSHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHH-HHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhC-------Cchhhhhh
Confidence 5556666666655 44554 4777766542 1 112 3344445566653 35677765
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=65.82 E-value=11 Score=38.34 Aligned_cols=152 Identities=8% Similarity=-0.066 Sum_probs=86.4
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhcCCCC-HHHHHHHHHHhhcCC--chhhHHHHH
Q 002235 57 TIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILICQNLRNNLQHPN-EYIRGVTLRFLCRLN--ETEIIEPLI 133 (949)
Q Consensus 57 ~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv~NsL~KDL~~~N-~~iR~~ALr~L~~I~--~~el~~~l~ 133 (949)
..+..|.+++-++.+-++-+++....+.-. ++-+-....+... -+| ..+=++| ++++.+. .|+ .+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~ 126 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELP 126 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHH
Confidence 334446667777788777777765532210 2222111222211 222 2333344 4344332 233 234
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcch---hhHHHHHHHH
Q 002235 134 PSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ---DRAINYLLTH 210 (949)
Q Consensus 134 ~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~---~~ai~~L~~~ 210 (949)
+.+.+.+.|.++++||.|+.+...-.+. .++ ....++++..+ .|.+-.|+.+.--+|.++.. +....||+
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~~~~-~~~---~~~~~i~~~~~-~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl~-- 199 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLMLKEK-TNQ---DLLKKAIIYDR-TTEEFFIQKAIGWSLRQYSKTNPQWVEELMK-- 199 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTCGGG-CCH---HHHHHHHHHTT-TCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHC-CCH---HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHhhCHHHHHHHHh--
Confidence 5678899999999999999987644321 222 23356777644 78888888877788888764 44566772
Q ss_pred HhhcCccChhHHHHHHHHH
Q 002235 211 VDRVSEWGELLQMVVLELI 229 (949)
Q Consensus 211 l~~i~~~~p~~q~~il~ll 229 (949)
-...++|..-..++.+
T Consensus 200 ---~~~l~~~~~r~Aikkl 215 (220)
T 2b6c_A 200 ---ELVLSPLAQREGSKYL 215 (220)
T ss_dssp ---HSCCCHHHHHHHTTTS
T ss_pred ---hccCCHHHHHHHHHhc
Confidence 2356778766665543
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=65.54 E-value=66 Score=31.08 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccCC
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNS 327 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~d 327 (949)
.+-+...+.+..|-.-. ..-+.++..+.+.| .++++++.+.+|..|..+.+.-...|. ++...+.++++.
T Consensus 31 ~Dw~~~leicD~I~~~~---~~~keA~ral~krl-~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~ 106 (163)
T 1x5b_A 31 EDWSLIMDICDKVGSTP---NGAKDCLKAIMKRV-NHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKN 106 (163)
T ss_dssp CCHHHHHHHHHHHHHSS---SHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhCCC---ccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHcc
Confidence 34445555554443321 12334555555555 567788888888888877765322222 122223333332
Q ss_pred -CCHHHHHHHHHHHHh
Q 002235 328 -PNLDIRRKTLDIVLE 342 (949)
Q Consensus 328 -~d~~Ir~~aL~lL~~ 342 (949)
.++.||.++++++..
T Consensus 107 ~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 107 KAHPKVCEKLKSLMVE 122 (163)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 456777777776653
No 128
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=64.59 E-value=2e+02 Score=32.80 Aligned_cols=152 Identities=9% Similarity=0.126 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHH
Q 002235 110 EYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKR 189 (949)
Q Consensus 110 ~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~ 189 (949)
.+++. -++.|+.+...++++.+..-|-..+.+ +||-. +..++|. .+|+... .+...++ ...|+...-
T Consensus 77 ~~~~~-~l~lL~~~~~~d~vqYvL~Li~DlL~~-~~~~~-----~~~~~f~--~~~~~~~---~l~~~~~-~~dd~~~ll 143 (480)
T 1ho8_A 77 KTLIP-LIHLLSTSDNEDCKKSVQNLIAELLSS-DKYGD-----DTVKFFQ--EDPKQLE---QLFDVSL-KGDFQTVLI 143 (480)
T ss_dssp TTHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHC-SSSSH-----HHHHHHH--HCTTHHH---HHHHHCS-CSSHHHHHH
T ss_pred hHHHH-HHHHHhhcChHHHHHHHHHHHHHHHhc-CcchH-----HHHHHHh--hCcccch---HHHHHHh-cccchHHHH
Confidence 34444 788899999999999999888888877 45543 2234444 3443322 2333333 344555655
Q ss_pred HHHHHHHhcc-----hhhHHHHHHH---HHhhcCcc-ChhHHHHHHHHHHHhhhcCc------hhHHHHHHHH----HHH
Q 002235 190 NAFLMLFTCD-----QDRAINYLLT---HVDRVSEW-GELLQMVVLELIRKVCRTNK------GEKGKYIKII----ISL 250 (949)
Q Consensus 190 ~Al~~L~~i~-----~~~ai~~L~~---~l~~i~~~-~p~~q~~il~ll~~~~~~~p------~~~~~li~~L----~~l 250 (949)
.|+.++..+. .++++.++.+ .+..+... +.-.|-..++.+..+.+.++ .....+++.+ ...
T Consensus 144 ~a~~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~ 223 (480)
T 1ho8_A 144 SGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRA 223 (480)
T ss_dssp HHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHh
Confidence 6665433321 1224444433 22222221 11124456666665544321 0112223333 333
Q ss_pred HcCCc-------------hHHHHHHHHHHHccCCChH
Q 002235 251 LNAPS-------------TAVIYECAGTLVSLSSAPT 274 (949)
Q Consensus 251 L~s~s-------------~aV~~Eaa~~l~~l~~~~~ 274 (949)
+.+.+ --+.|++.-+++-++-.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 224 TDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp HC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred hccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 32221 2368999999998887664
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=62.89 E-value=62 Score=30.38 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccCCC
Q 002235 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALNSP 328 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~d~ 328 (949)
+-+...+.+..+-.= +..-+.++..+.+.+ .++++++.+.+|..|..+.+.-...|. ++..++..+++..
T Consensus 22 dw~~ileicD~I~~~---~~~~k~a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 22 DWGLILDICDKVGQS---RTGPKDCLRSIMRRV-NHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG 97 (140)
T ss_dssp CHHHHHHHHHHHTTS---TTHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCC---CcCHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence 344555555544321 222344555555555 567788888888877777664322222 1222233333445
Q ss_pred CHHHHHHHHHHHHh
Q 002235 329 NLDIRRKTLDIVLE 342 (949)
Q Consensus 329 d~~Ir~~aL~lL~~ 342 (949)
+..||.+.++++..
T Consensus 98 ~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 98 HPKVCEKLKALMVE 111 (140)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666666666553
No 130
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=61.53 E-value=1.5e+02 Score=32.03 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=42.6
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchH-----HHHHHHHccCCChhHHHHHHHHHHhcc
Q 002235 136 VLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP-----EMIEKVLSTEQDPSAKRNAFLMLFTCD 199 (949)
Q Consensus 136 I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~-----e~l~~~L~~d~d~~v~~~Al~~L~~i~ 199 (949)
+...|.+++.-.+|.|+..+.+++. .+++.++++. ..+-+.. .+.+...+..++.+|.++-
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q--~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM 188 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQ--EDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLM 188 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHH--TCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhh--cchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHH
Confidence 3345556888899999999999998 7887776653 2333333 5667777777777776654
No 131
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=58.63 E-value=1.6e+02 Score=29.86 Aligned_cols=203 Identities=9% Similarity=0.020 Sum_probs=124.9
Q ss_pred HHhhcCCchhhHHHHHHHHHH---hccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHH
Q 002235 118 RFLCRLNETEIIEPLIPSVLQ---NLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLM 194 (949)
Q Consensus 118 r~L~~I~~~el~~~l~~~I~~---~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~ 194 (949)
..|-.+.+|+-.......++. .+.=+.|-+|+-|=- +.+=.+ . ++. .+|.+.+..+. .+.....++-|+..
T Consensus 11 ~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~-~~k~~~--~-~~~-~~~~~~~~~L~-~~~~~E~r~~ai~~ 84 (232)
T 3jxy_A 11 EHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKD-IIQIHT--L-PDQ-KDFQIIIRELW-DLPEREFQAAALDI 84 (232)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHH-HHHHHC--C-CCG-GGHHHHHHHHH-TSSBHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHH-HHHhcc--c-cch-hhHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 344555566665555544433 455577777765433 222222 1 111 24656777755 44556688888888
Q ss_pred HHhcch---hhHHHHHHHHHhhcCccChhHHHHHH--HHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHcc
Q 002235 195 LFTCDQ---DRAINYLLTHVDRVSEWGELLQMVVL--ELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSL 269 (949)
Q Consensus 195 L~~i~~---~~ai~~L~~~l~~i~~~~p~~q~~il--~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l 269 (949)
+..... ++.+..+-..+. ..+.|..|-.+ ++++.+...+|. .+.+.+..+..|.+.-++.-|+-.++..
T Consensus 85 l~~~~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~W~~s~~~w~rR~ai~~~l~~ 158 (232)
T 3jxy_A 85 MQKYKKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPKWIASDNIWLQRAAILFQLKY 158 (232)
T ss_dssp HHHTGGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHHHHHSSCHHHHHHHHHTTTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 764321 223455544444 34667666655 555666665664 2446788999999998877777665443
Q ss_pred C--CChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHH
Q 002235 270 S--SAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVL 341 (949)
Q Consensus 270 ~--~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~ 341 (949)
. .++.. ...++..++.+++.-|+-.+=-.|..+..++|+.+.+++..= .-++...+.|+.-|-
T Consensus 159 ~~~~d~~~----~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~-----~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 159 KQKMDEEL----LFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNN-----ELAPLSKREAIKHIK 223 (232)
T ss_dssp GGGCCHHH----HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS-----CCCHHHHHHHTTTTH
T ss_pred HhCCCHHH----HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHC-----CCCHHHHHHHHHhcc
Confidence 2 23322 223455566888899999999999999999999887765531 335677777776553
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=58.40 E-value=2.5e+02 Score=31.96 Aligned_cols=115 Identities=8% Similarity=0.032 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHHhhcCccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHH
Q 002235 185 PSAKRNAFLMLFTCDQDRAINYLLTHVDRVSEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAG 264 (949)
Q Consensus 185 ~~v~~~Al~~L~~i~~~~ai~~L~~~l~~i~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~ 264 (949)
+.+...-+.+|....+++.++|+..++.++-..+|+.. ..++++... |.... .++...+ ++.+.....++.
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~-~~~~~f~~~----~~~~~---~l~~~~~-~~dd~~~ll~a~ 146 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGD-DTVKFFQED----PKQLE---QLFDVSL-KGDFQTVLISGF 146 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSH-HHHHHHHHC----TTHHH---HHHHHCS-CSSHHHHHHHHH
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchH-HHHHHHhhC----cccch---HHHHHHh-cccchHHHHHHH
Confidence 44555566777777777888888877776533345321 334454332 22111 2333333 445554444444
Q ss_pred HH-HccC----CChHHHHHHHH--HHHHHHccCCchHHHHHHHHHHHHHHh
Q 002235 265 TL-VSLS----SAPTAIRAAAN--TYSQLLLSQSDNNVKLIVLDRLNELRS 308 (949)
Q Consensus 265 ~l-~~l~----~~~~~l~~~a~--~li~lll~~~d~nvr~iaL~~L~~l~~ 308 (949)
.+ ..+. ...+.+..... .++..|.+.++.+.++++++.|..|..
T Consensus 147 ~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~ 197 (480)
T 1ho8_A 147 NVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV 197 (480)
T ss_dssp HHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc
Confidence 33 2221 12334444444 466666443445678899999987765
No 133
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.53 E-value=1.3e+02 Score=28.74 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHH------HHHh-heecc
Q 002235 253 APSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVD------LIMD-VLRAL 325 (949)
Q Consensus 253 s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~------~~~~-il~~L 325 (949)
+.+-+...+.+..+-.-. ..-+.++..+.+.+.+.+++++.+.||..|..+.+.-...|.. +..+ +..++
T Consensus 31 ~~Dw~~~leicD~I~~~~---~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~ 107 (157)
T 1elk_A 31 SEDWALNMEICDIINETE---EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTI 107 (157)
T ss_dssp SCCHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHH
T ss_pred CcCHHHHHHHHHHHhCCC---ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHh
Confidence 344455555555443321 2234566666666644567888888998888887753222221 2233 33344
Q ss_pred ---CCCCHHHHHHHHHHHHh
Q 002235 326 ---NSPNLDIRRKTLDIVLE 342 (949)
Q Consensus 326 ---~d~d~~Ir~~aL~lL~~ 342 (949)
.+++..||.++++++..
T Consensus 108 ~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 108 LPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp STTTCCCHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHH
Confidence 24556888888887775
No 134
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=54.19 E-value=15 Score=37.80 Aligned_cols=191 Identities=15% Similarity=0.180 Sum_probs=112.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH--HhCCCCCC-------chh-----------HHHHHhhcCCCCcchhHHHHHHHH
Q 002235 20 NEIKEALEGNDVPAKVDAMKKAIML--LLNGETLP-------QLF-----------ITIVRYVLPSEDHTIQKLLLLYLE 79 (949)
Q Consensus 20 ~eir~~L~s~~~~~k~~aL~kli~l--~~~G~d~s-------~lf-----------~~Vik~l~~s~d~~lKrL~YL~l~ 79 (949)
++|++.|++-.++++...+.+.+-- -..|-.++ .++ ...+.-|..+.-++.+-++..++.
T Consensus 7 ~~i~~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~~~~E~r~~ai~~l~ 86 (232)
T 3jxy_A 7 KALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAALDIMQ 86 (232)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTSSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6788888888887777777776532 23444432 111 123444666776777777766666
Q ss_pred HHhh-cCCCCCCCchHHHHHHHHHhhcCCCCH-HHHHHHHHHhhcCC--chhhHHHHHHHHHHhccCCChHHHHHHHHHH
Q 002235 80 IIDK-TDAKGRVLPEMILICQNLRNNLQHPNE-YIRGVTLRFLCRLN--ETEIIEPLIPSVLQNLQHRHPYIRRNAILAV 155 (949)
Q Consensus 80 ~~~~-~~~d~~l~~e~iLv~NsL~KDL~~~N~-~iR~~ALr~L~~I~--~~el~~~l~~~I~~~L~d~~pyVRk~A~lal 155 (949)
...+ .+ ++-+-....+... -+|= .+-++|-+.++.+. .|+- +.+.+.+.+.|.++++||.|+.+.
T Consensus 87 ~~~k~~~------~~~l~~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~~---~~~~l~~W~~s~~~w~rR~ai~~~ 155 (232)
T 3jxy_A 87 KYKKHIN------ETHIPFLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPEL---ISAYIPKWIASDNIWLQRAAILFQ 155 (232)
T ss_dssp HTGGGCC------GGGHHHHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGGG---GGGTHHHHHHSSCHHHHHHHHHTT
T ss_pred HHHHhCC------HHHHHHHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHHH---HHHHHHHHhcCCchHHHHHHHHHH
Confidence 4322 22 2222122233332 2332 44445444444332 3441 234566788999999999999887
Q ss_pred HHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchh---hHHHHHHHHHhhcCccChhHHHHHHHHHHH
Q 002235 156 MAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQD---RAINYLLTHVDRVSEWGELLQMVVLELIRK 231 (949)
Q Consensus 156 ~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~---~ai~~L~~~l~~i~~~~p~~q~~il~ll~~ 231 (949)
...+.. .++ ....++++..+ .|.+..|+.+.--+|.++... ....||.+. ..++|..-..++.+.+
T Consensus 156 l~~~~~-~d~---~~~~~~i~~~~-~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~-----~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 156 LKYKQK-MDE---ELLFWIIGQLH-SSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNN-----ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp TTCGGG-CCH---HHHHHHHHHHT-TCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHS-----CCCHHHHHHHTTTTHH
T ss_pred HHHHhC-CCH---HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHC-----CCCHHHHHHHHHhccc
Confidence 654331 222 23456777754 899999988888888887644 445666542 4678887777777654
No 135
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=53.41 E-value=2.5e+02 Score=30.43 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=42.9
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCccc-------ccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhH
Q 002235 131 PLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQL-------LVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRA 203 (949)
Q Consensus 131 ~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~l-------i~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~a 203 (949)
.+...+..+|..=.---||.++.....+.+ ....- +...++++..++..-.++.+..++=.+|.+|..+.+
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr--~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILR--RQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHT--CCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHh--cccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHH
Confidence 445566677777777888888888777777 33321 112245555544333345555566667777776654
Q ss_pred H
Q 002235 204 I 204 (949)
Q Consensus 204 i 204 (949)
+
T Consensus 156 l 156 (341)
T 1upk_A 156 L 156 (341)
T ss_dssp H
T ss_pred H
Confidence 4
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=51.83 E-value=69 Score=30.46 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH------HHHHHhheeccCC
Q 002235 254 PSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM------VDLIMDVLRALNS 327 (949)
Q Consensus 254 ~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l------~~~~~~il~~L~d 327 (949)
.+-+...|.+..+-.=. ..-+.++..+.+.+ .++++++.+.+|..|..+.+.-...| .++...+..++++
T Consensus 27 ~dw~~ileicD~I~~~~---~~pk~a~ral~krl-~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~ 102 (149)
T 3g2s_A 27 LDWASINGFCEQLNEDF---EGPPLATRLLAHKI-QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSP 102 (149)
T ss_dssp CCHHHHHHHHHHGGGSS---SHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHCCC---CcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcc
Confidence 34455555555543322 12234555555555 46778888888887777766432222 1233444455543
Q ss_pred ------CCHHHHHHHHHHHHhh
Q 002235 328 ------PNLDIRRKTLDIVLEL 343 (949)
Q Consensus 328 ------~d~~Ir~~aL~lL~~l 343 (949)
.+..||.+.|+++...
T Consensus 103 k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 103 KYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp TTTGGGSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHH
Confidence 5788999998888753
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.01 E-value=1.2e+02 Score=28.74 Aligned_cols=85 Identities=9% Similarity=0.178 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhH------HHHHHhheeccCC-
Q 002235 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIM------VDLIMDVLRALNS- 327 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l------~~~~~~il~~L~d- 327 (949)
+-+...+.+..+-.- +..-+.++..+.+.+ .++++++.+.||..|..+.+.-...| .++...+..++++
T Consensus 18 dw~~~leicD~I~~~---~~~~k~a~rai~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k 93 (148)
T 1mhq_A 18 DWSAIQNFCEQVNTD---PNGPTHAPWLLAHKI-QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK 93 (148)
T ss_dssp CHHHHHHHHHHHHHS---SHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHcC---CccHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Confidence 334444444444332 122344555555665 57788888888888888776532222 2334445555543
Q ss_pred -----CCHHHHHHHHHHHHhh
Q 002235 328 -----PNLDIRRKTLDIVLEL 343 (949)
Q Consensus 328 -----~d~~Ir~~aL~lL~~l 343 (949)
.+..||.+.|+++..-
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 94 YLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp TTSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 4788999999877753
No 138
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=49.47 E-value=2.8e+02 Score=29.97 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHHhhChhhHHHHH--------HhheeccCCCCHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHH
Q 002235 291 SDNNVKLIVLDRLNELRSSHRDIMVDLI--------MDVLRALNSPNLDIRRKTLDIVLELI-TPRNINEVVLMLKKEVV 361 (949)
Q Consensus 291 ~d~nvr~iaL~~L~~l~~~~p~~l~~~~--------~~il~~L~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv~~L~kel~ 361 (949)
+.-.+--=|+.++..+..+|+.+++++. ..+-.+|.++|--.||.+|.+|..+. +..|..- +.
T Consensus 176 ~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~v-M~------- 247 (341)
T 1upk_A 176 STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTI-MT------- 247 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHH-HH-------
T ss_pred CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHH-HH-------
Confidence 3334444455555555555555443321 12334677778888888888888754 3444432 21
Q ss_pred HhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002235 362 KTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLD 439 (949)
Q Consensus 362 ~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~ 439 (949)
+|++ ....+..+|.+|++....+..|+..+.+-.+ .+|..-..+..-|..
T Consensus 248 ~Yis---------------------------~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV-ANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 248 KYIS---------------------------KPENLKLMMNLLRDKSRNIQFEAFHVFKVFV-ANPNKTQPILDILLK 297 (341)
T ss_dssp HHTT---------------------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-HCSSCCHHHHHHHHH
T ss_pred HHhC---------------------------CHHHHHHHHHHhcCchhchhhhhhhheeeee-eCCCCChHHHHHHHH
Confidence 2332 1256788999999998888888887766554 467766666555444
No 139
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=49.14 E-value=1.8e+02 Score=35.24 Aligned_cols=167 Identities=12% Similarity=0.149 Sum_probs=98.0
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCCCchhHHHHHhhcCCCCcchhHHHHHHHHHHhhcCCCCCCCchHHHH
Q 002235 18 IANEIKEALEGNDVPAKVDAMKKAIMLLLNGETLPQLFITIVRYVLPSEDHTIQKLLLLYLEIIDKTDAKGRVLPEMILI 97 (949)
Q Consensus 18 ~~~eir~~L~s~~~~~k~~aL~kli~l~~~G~d~s~lf~~Vik~l~~s~d~~lKrL~YL~l~~~~~~~~d~~l~~e~iLv 97 (949)
.++.|.+.|..-+...|...+.-+..+...|+--...++.+++++-.-.++..-.-+.-.+..+... + ..++.-+.-.
T Consensus 492 ~~~~l~~~l~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~~~~-~-~~~~~~~~~l 569 (780)
T 1z5h_A 492 TFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRML-T-HAFDDDARAF 569 (780)
T ss_dssp HHHHHHHTGGGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHHHHHHTT-C-STTHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhc-h-HHHHHHHHHH
Confidence 5566777775557778889999999999999866678889999875445555444333333333323 2 2232212111
Q ss_pred HHHHHhhc----CCCCHHHHHHHHHHhhcCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHH
Q 002235 98 CQNLRNNL----QHPNEYIRGVTLRFLCRLNETEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPE 173 (949)
Q Consensus 98 ~NsL~KDL----~~~N~~iR~~ALr~L~~I~~~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e 173 (949)
...+.+-+ .+.+...|..+++.+|+...++.++ ......+. ..-+|-+|..++-+..+- - .+ |..
T Consensus 570 ~~~~~~~l~~~~~~~~~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~-~~i~~~lr~~v~~~~~~~-g----~~----~~~ 638 (780)
T 1z5h_A 570 CRSRMQFLTGKQDENLKIALGRVSRLYVMVDESYAEE-MSKLFKDF-DSAEPEMRSSIATAYALV-T----GD----LKG 638 (780)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHTTGGGG-GGSCHHHHHHHHHHHHHH-T----CC----HHH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhc-CCCCHHHHHHHHHHHHHc-C----cH----HHH
Confidence 12222222 1234578999999999999888776 44333332 335788887765555542 1 11 545
Q ss_pred HHHHHHccCCChhHHHHHHHHHHhc
Q 002235 174 MIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 174 ~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
+.+.+ ..++++.-+..++.+|...
T Consensus 639 l~~~~-~~~~~~~~~~~~l~al~~~ 662 (780)
T 1z5h_A 639 LLEKF-RSVDRDEDRVRIISAFGKL 662 (780)
T ss_dssp HHHHH-HSCCSHHHHHHHHHHHTTC
T ss_pred HHHHH-hcCCCHHHHHHHHHHhccC
Confidence 55543 3566666666666665543
No 140
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=47.78 E-value=79 Score=39.70 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=79.2
Q ss_pred CCchHHHHHHHHHHHHHHhhChhh-----HHHHHHhheeccCCCC-HHHHHHHHHHHHhh--cC-C-CcHHHHHHHHHHH
Q 002235 290 QSDNNVKLIVLDRLNELRSSHRDI-----MVDLIMDVLRALNSPN-LDIRRKTLDIVLEL--IT-P-RNINEVVLMLKKE 359 (949)
Q Consensus 290 ~~d~nvr~iaL~~L~~l~~~~p~~-----l~~~~~~il~~L~d~d-~~Ir~~aL~lL~~l--~~-~-~Nv~~Iv~~L~ke 359 (949)
++.. .|..+|..+..+.-+|--. -.....-++.+|.|+. .+||..|-++|..+ |. . ..++.++..+.+.
T Consensus 813 s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~ 891 (997)
T 1vsy_5 813 LSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG 891 (997)
T ss_dssp SCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS
T ss_pred CCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 4566 9999999987776532211 1223344677899999 99999999999887 44 4 4455555544432
Q ss_pred HHH--hcc---CCccCCHHHHHHHHHHHHHhHccCccc---HHHHHHHHHHHHhCCC--cccHHHHHHHHHHHHHhC
Q 002235 360 VVK--TQS---GELEKNGEYRQMLIQAIHSCAIKFPEV---ASTVVHLLMDFLGDSN--VASAIDVIIFVREIIEMN 426 (949)
Q Consensus 360 l~~--~~~---~~~d~~~e~r~~lv~aI~~la~kf~~~---~~~~l~~L~~lL~~~~--~~v~~e~i~~l~~ii~~~ 426 (949)
+.+ ... ....++.--|...|-+++.|...||-. .+|+=+.|..+-+..+ +.+...+=..+.+.-+.+
T Consensus 892 ~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 892 LDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVR 968 (997)
T ss_dssp STTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHHT
T ss_pred HhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 211 000 000001136677888888888888865 4577776655443332 223333334555544433
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.72 E-value=97 Score=30.14 Aligned_cols=65 Identities=8% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHhheeccC------CCCHHHHHHHHHHHHhh
Q 002235 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMDVLRALN------SPNLDIRRKTLDIVLEL 343 (949)
Q Consensus 278 ~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~il~~L~------d~d~~Ir~~aL~lL~~l 343 (949)
.++..+.+.+ .++++++.+.+|..|..+.+.-...|. ++...+..+++ ..+..||.++|+++..-
T Consensus 50 ~A~ral~krl-~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 50 IAVRLLAHKI-QSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4445555554 456777777777777776664222221 22333444443 24678999999888753
No 142
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=45.54 E-value=4e+02 Score=32.43 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCc
Q 002235 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGE 165 (949)
Q Consensus 126 ~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~ 165 (949)
..+++.+.|.+..++-++++.|...+..|+..+.. ..|
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~--l~P 371 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLE--LDP 371 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--TCC
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHh--cCC
Confidence 45566667777777777777777777777777666 455
No 143
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=43.78 E-value=47 Score=29.50 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=38.8
Q ss_pred cceeEEEEEEEecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEE
Q 002235 738 HYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANI 791 (949)
Q Consensus 738 ~~~ivld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~ 791 (949)
...+..++..+|.++..|+|+.+.+...|=.+-. +.....+.|++..+.++.+
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~-~~~~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPK-ILNVGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEE-EEEECCBCTTCEEEEEEEE
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcce-EEEcCcCCCCCEEEEEEEE
Confidence 6778899999999999999999988877754432 2222447788876655544
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.66 E-value=2.3e+02 Score=28.74 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 002235 255 STAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSS 309 (949)
Q Consensus 255 s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~ 309 (949)
+-+..+|.+..|-.=...+ +.++..+.+.+ .++++++.+.||..|..+.+.
T Consensus 25 dw~~ileicD~I~~~~~~~---k~a~ral~krl-~~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 25 DWESILQICDLIRQGDTQA---KYAVNSIKKKV-NDKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp CHHHHHHHHHHHHTTSSCH---HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCccH---HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHh
Confidence 3455555555554321122 34455555555 477888888888888777664
No 145
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=40.51 E-value=11 Score=32.12 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=34.7
Q ss_pred EEEecceeEEEEEEEecChhhh-cceEEEEeecCCeEEeecCCcceeCCCC
Q 002235 734 VTVHHYDIVLDVTVINRTKETL-QNLCLELATMGDLKLVERPQNYTLAPES 783 (949)
Q Consensus 734 v~v~~~~ivld~~v~N~t~~tL-qNv~vel~t~g~l~~~~~p~~~~l~p~~ 783 (949)
|.+.+.|=.|-|.+-|.|+..| -|++++++..|. ..+...++||+
T Consensus 11 i~~~~~DNSL~F~L~N~TN~ii~GNC~~~Fs~~~~-----~~~~I~MGPHE 56 (107)
T 2kzk_A 11 VEVSNEDNSLHFILYNKTNIIIPGNCTFEFSSQIS-----EVFSIKMGPHE 56 (107)
T ss_dssp EEECCBTTBCCEEEECCSSSCCCSSCEEEBCCSSS-----CCBCCBCCSSC
T ss_pred EEEccCCCeEEEEEecCCceEecCcceEEEecCCC-----cEEEEecCccc
Confidence 5788999999999999999987 899999986552 22334466666
No 146
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=39.09 E-value=1.4e+02 Score=28.77 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcch
Q 002235 137 LQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQ 200 (949)
Q Consensus 137 ~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~ 200 (949)
.++-...++-.-....+-+.-+.+ ..++--+++...|.+-| ..+||.++..|+.+|..|-.
T Consensus 21 ekATs~~~~~~Dw~~~leicD~I~--~~~~~~keA~ral~krl-~~~n~~vql~AL~LLd~~vk 81 (163)
T 1x5b_A 21 EKATNEYNTTEDWSLIMDICDKVG--STPNGAKDCLKAIMKRV-NHKVPHVALQALTLLGACVA 81 (163)
T ss_dssp HHHTCTTCSSCCHHHHHHHHHHHH--HSSSHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcCHHHHHHHHHHHh--CCCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 333333333333344455555544 33333333444444444 55667777777766655543
No 147
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=38.11 E-value=63 Score=29.75 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHh
Q 002235 376 QMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEM 425 (949)
Q Consensus 376 ~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~ 425 (949)
+..|+.+...|..+...++.+++.+.+.+......-.-..+..+-+|+++
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 45666777777777777778888888877766544333455666666654
No 148
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=35.87 E-value=79 Score=28.54 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=39.2
Q ss_pred EEEEEEEecChhhhcceEEEEeecCCeEEeecCCcceeCCCCeeEEEEEEEEe
Q 002235 742 VLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVS 794 (949)
Q Consensus 742 vld~~v~N~t~~tLqNv~vel~t~g~l~~~~~p~~~~l~p~~~~~i~~~~kv~ 794 (949)
+..+-|.|.|.+. +.+.+++...+++++.. ++..+++|++...+.+.+.+.
T Consensus 34 ~Ytlki~Nkt~~~-~~~~l~v~g~~~l~~~g-~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 34 TYTLKVINKTQQV-QEYNLDVKGLNDVSWYG-KQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEECSSSC-EEEEEEEESCSSCEEES-CCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEECCCCC-EEEEEEEeCCcccEEeC-CCcEEECCCCEEEEEEEEEEC
Confidence 4567899999987 66777776655688765 445789999998888888875
No 149
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=33.31 E-value=3.8e+02 Score=26.74 Aligned_cols=198 Identities=7% Similarity=-0.094 Sum_probs=114.6
Q ss_pred HhhcCCchhhHHHHHHHHHH---hccCCChHHHHHHHHHHHHHh-cCCCCcccccchHHHHHHHHccCCChhHHHHHHHH
Q 002235 119 FLCRLNETEIIEPLIPSVLQ---NLQHRHPYIRRNAILAVMAIY-KLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLM 194 (949)
Q Consensus 119 ~L~~I~~~el~~~l~~~I~~---~L~d~~pyVRk~A~lal~ki~-~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~ 194 (949)
.|-.+.+|+-.+.+...++. .+.=+.|-+|+-|=- +.+-. . . | .-.++ +.+..+. ...-.-.+.-|+.+
T Consensus 6 ~L~~~~d~~~a~~~~~y~k~~~~flGV~~P~lR~laK~-~~k~~~~--~-~-~~~~~-~~~~~L~-~s~~~E~r~la~~~ 78 (220)
T 2b6c_A 6 TLQFQKNPETAAKMSAYMKHQFVFAGIPAPERQALSKQ-LLKESHT--W-P-KEKLC-QEIEAYY-QKTEREYQYVAIDL 78 (220)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSSCCCCCCHHHHHHHTHH-HHHHHTT--S-C-HHHHH-HHHHHHH-TSSSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHcCCCCeeeCCChHHHHHHHHH-HHHHhcc--C-c-ccchH-HHHHHHH-cCchhHHHHHHHHH
Confidence 34555666666554444432 333456666654432 22222 2 1 1 01133 6666654 44456678888877
Q ss_pred HHhcchh---hHHHHHHHHHhhcCccChhHHHHHH-HHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccC
Q 002235 195 LFTCDQD---RAINYLLTHVDRVSEWGELLQMVVL-ELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLS 270 (949)
Q Consensus 195 L~~i~~~---~ai~~L~~~l~~i~~~~p~~q~~il-~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~ 270 (949)
|...... +.+.++-.. ++.-+.|..|-.+ +.++.+....|. .+.+.+..+..|.+.=++.-|+-..+...
T Consensus 79 l~~~~~~~~~~~l~~~~~~---l~~~~nWd~~D~~a~~~~~~~~~~~~---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~ 152 (220)
T 2b6c_A 79 ALQNVQRFSLEEVVAFKAY---VPQKAWWDSVDAWRKFFGSWVALHLT---ELPTIFALFYGAENFWNRRVALNLQLMLK 152 (220)
T ss_dssp HHHTGGGCCHHHHHHGGGG---TTTTCSHHHHHHHHHHHHHHHHHSGG---GHHHHHHHHTTCSSHHHHHHHHHTTTTCG
T ss_pred HHHHHhhCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHHHHHHChH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7765322 223322222 3345667666644 445555554554 35677899999999988777776655442
Q ss_pred C--ChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHH
Q 002235 271 S--APTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLD 338 (949)
Q Consensus 271 ~--~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~ 338 (949)
. ++. ....++..++.+++.-|+-.+=-.|..+..++|+.+.+++ . -+.-++...++|++
T Consensus 153 ~~~~~~----~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl-~----~~~l~~~~~r~Aik 213 (220)
T 2b6c_A 153 EKTNQD----LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM-K----ELVLSPLAQREGSK 213 (220)
T ss_dssp GGCCHH----HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH-H----HSCCCHHHHHHHTT
T ss_pred HCCCHH----HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH-h----hccCCHHHHHHHHH
Confidence 1 232 2344666667888888999999999999999999887765 1 12234556666654
No 150
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=33.22 E-value=9e+02 Score=31.11 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHh
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMD 320 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~ 320 (949)
..+.+.+.+++.-....+..+.+..+=.+-.+.+ -..++..+.+++.. ++.+.-.+|+.|..|. -.++........
T Consensus 156 ~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~-H~~v~~~L~~lL~~--~~~L~~~iLdaLs~L~-Ls~~~l~~vr~~ 231 (1323)
T 3s4w_B 156 KDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQ-HANVGKELGELLVQ--NTSLTVPILDVFSSLR-LDPNFLSKIRQL 231 (1323)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGG-HHHHHHHHHHHHHH--CSTTHHHHHHHHHHSC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchh-hHHHHHHHHHHHhc--CcchHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3455555555555555666666666655543322 22467778888754 5678889999998873 467777766666
Q ss_pred heeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 002235 321 VLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVV 361 (949)
Q Consensus 321 il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~ 361 (949)
++..|.+-+.+.==-.+..|++-++..|+.++|..|.+.+.
T Consensus 232 vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~ 272 (1323)
T 3s4w_B 232 VMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLN 272 (1323)
T ss_dssp HHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcC
Confidence 67777766655555677888888999999999999987664
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=32.98 E-value=3.8e+02 Score=33.47 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchH-HHHHHHHc---cCCChhHHHHHHHHHH
Q 002235 126 TEIIEPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAP-EMIEKVLS---TEQDPSAKRNAFLMLF 196 (949)
Q Consensus 126 ~el~~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~-e~l~~~L~---~d~d~~v~~~Al~~L~ 196 (949)
.++-..++..+.+.-.+.=+-||++|=-++.++.+ ..+.....+. .+++. |. .+.|+.-...|+.+|.
T Consensus 128 t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~--~~~gs~~~iip~ll~~-L~~~~~~~~~~~iKGaLy~L~ 199 (997)
T 1vsy_5 128 SKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMK--QLVGSYGVVINKIIPS-LEKAIKDHDYMKIQVILNVLL 199 (997)
T ss_dssp CSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHT--TBTTHHHHHHHHHHHH-HHHHHHTCSCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHH-HhccccCCCHHHHHHHHHHHh
Confidence 34456778888889999999999999999999998 5654433332 33332 32 3667776777776654
No 152
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=31.68 E-value=2.7e+02 Score=26.35 Aligned_cols=86 Identities=9% Similarity=0.160 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHH------HHHHh-heeccCC-
Q 002235 256 TAVIYECAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMV------DLIMD-VLRALNS- 327 (949)
Q Consensus 256 ~aV~~Eaa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~------~~~~~-il~~L~d- 327 (949)
-+..+|.+-.|-.= + ..-+.++..+.+.+...+++++.+.||..|..+.+.-...|. ++..+ +.+++++
T Consensus 34 w~~ileicD~In~~-~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~ 110 (152)
T 3rru_A 34 WGQFMHICDIINTT-Q--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPR 110 (152)
T ss_dssp HHHHHHHHHHHHHS-T--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGG
T ss_pred HHHHHHHHHHHhCC-C--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCC
Confidence 34445544444331 1 223455666666664345677777788888777765333332 23333 4444543
Q ss_pred --CCHHHHHHHHHHHHhhc
Q 002235 328 --PNLDIRRKTLDIVLELI 344 (949)
Q Consensus 328 --~d~~Ir~~aL~lL~~l~ 344 (949)
.+..||.+.|+++....
T Consensus 111 ~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 111 YNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp GCCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 34579999999888654
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=31.59 E-value=4.6e+02 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhhcCCc--hhhHHH
Q 002235 99 QNLRNNLQHPNEYIRGVTLRFLCRLNE--TEIIEP 131 (949)
Q Consensus 99 NsL~KDL~~~N~~iR~~ALr~L~~I~~--~el~~~ 131 (949)
..+..||.+|+. |-.||.-||+-++ |++.+.
T Consensus 6 ~qli~~L~~p~~--Re~AL~eLsk~Re~~~~La~~ 38 (268)
T 2fv2_A 6 YQWINELSSPET--RENALLELSKKRESVPDLAPM 38 (268)
T ss_dssp HHHHHHTSSTTT--HHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHhcCchh--HHHHHHHHHHhhhccccHHHH
Confidence 566688887764 9999999999776 555444
No 154
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=30.56 E-value=1.6e+02 Score=28.00 Aligned_cols=14 Identities=14% Similarity=-0.043 Sum_probs=6.1
Q ss_pred CChhHHHHHHHHHH
Q 002235 183 QDPSAKRNAFLMLF 196 (949)
Q Consensus 183 ~d~~v~~~Al~~L~ 196 (949)
.|+.++..|+.+|.
T Consensus 66 ~n~~v~l~AL~LLd 79 (157)
T 1elk_A 66 KNFHEVMLALTVLE 79 (157)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444444443
No 155
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=29.36 E-value=2.1e+02 Score=30.47 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHhhcCCchhhHHHHHH--------HHHHhccCCChHHHHHHHHHHHHHhcCCC----
Q 002235 97 ICQNLRNNLQHP-NEYIRGVTLRFLCRLNETEIIEPLIP--------SVLQNLQHRHPYIRRNAILAVMAIYKLPQ---- 163 (949)
Q Consensus 97 v~NsL~KDL~~~-N~~iR~~ALr~L~~I~~~el~~~l~~--------~I~~~L~d~~pyVRk~A~lal~ki~~l~~---- 163 (949)
+.+.+.+-++++ +|..+-+++|++|++-.......++- .+..++.+.|..+|-+++-.++.+-- .
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv--~~~~~ 225 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV--CFHKD 225 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH--HHHHS
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH--HHhhc
Q ss_pred -CcccccchHHHHHHHHccCCChhHHHHHHHHHHhc
Q 002235 164 -GEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 164 -~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i 198 (949)
..+........+++++..++|+-+.+.++.+|..+
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.08 E-value=4.4e+02 Score=26.25 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=21.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHhhC
Q 002235 278 AAANTYSQLLLSQSDNNVKLIVLDRLNELRSSH 310 (949)
Q Consensus 278 ~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~ 310 (949)
.++..+.+.| .++++++.+.+|..|..+.+.-
T Consensus 42 ~a~r~l~krl-~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 42 NAFAAIKKKM-NSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcc
Confidence 4455555555 5678888888888887776653
No 157
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=25.85 E-value=5.1e+02 Score=28.36 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=28.3
Q ss_pred heeccCCCCHHHHHHHHHHHHhhcCC---Cc-HHHHHHHHH
Q 002235 321 VLRALNSPNLDIRRKTLDIVLELITP---RN-INEVVLMLK 357 (949)
Q Consensus 321 il~~L~d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~~L~ 357 (949)
+..+|..+.+.+|+.++++|..+|.- .| .+.|++.+.
T Consensus 167 l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~ 207 (383)
T 3eg5_B 167 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMT 207 (383)
T ss_dssp HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHH
Confidence 55688899999999999999876642 45 777776654
No 158
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=25.83 E-value=3e+02 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHH
Q 002235 241 GKYIKIIISLLNAPSTAVIYECAGTLV 267 (949)
Q Consensus 241 ~~li~~L~~lL~s~s~aV~~Eaa~~l~ 267 (949)
+.|++-+..++...++.|.-.+...+.
T Consensus 84 ~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 84 RDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 334444444443334444444444443
No 159
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=24.66 E-value=2.9e+02 Score=26.06 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=6.8
Q ss_pred ccChhHHHHHHHHHH
Q 002235 216 EWGELLQMVVLELIR 230 (949)
Q Consensus 216 ~~~p~~q~~il~ll~ 230 (949)
..+|..|+..|.++-
T Consensus 59 ~~n~~v~l~AL~LLe 73 (149)
T 3g2s_A 59 SPQEWEAIQALTVLE 73 (149)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 344555544444433
No 160
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.19 E-value=2.3e+02 Score=27.38 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=7.2
Q ss_pred CCChhHHHHHHHHHHh
Q 002235 182 EQDPSAKRNAFLMLFT 197 (949)
Q Consensus 182 d~d~~v~~~Al~~L~~ 197 (949)
..|+.|+..|+.+|..
T Consensus 61 ~~n~~vql~AL~LLd~ 76 (171)
T 1juq_A 61 SPQEWEALQALTVLEA 76 (171)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3444444444444433
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.05 E-value=3.9e+02 Score=26.66 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=9.2
Q ss_pred cCCChhHHHHHHHHHHhc
Q 002235 181 TEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 181 ~d~d~~v~~~Al~~L~~i 198 (949)
...|+.++..|+.+|..+
T Consensus 52 ~~~n~~~~l~aL~Lle~~ 69 (220)
T 1dvp_A 52 NSPNPHSSCYSLLVLESI 69 (220)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 345555555555554443
No 162
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=22.94 E-value=8.3e+02 Score=27.35 Aligned_cols=217 Identities=9% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCCCcccccchHHHHHHHHccCCChhHHHHHHHHHHhcchhhHHHHHHH
Q 002235 130 EPLIPSVLQNLQHRHPYIRRNAILAVMAIYKLPQGEQLLVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCDQDRAINYLLT 209 (949)
Q Consensus 130 ~~l~~~I~~~L~d~~pyVRk~A~lal~ki~~l~~~~~li~~~~e~l~~~L~~d~d~~v~~~Al~~L~~i~~~~ai~~L~~ 209 (949)
+..+..+...+.+.+|.=|-..-..+.+||. +...+.+-+...+...+ ...+++...+.++.-|..
T Consensus 161 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~--Kf~~~R~~Irk~i~nif------------~~fi~e~e~~nGIaeLLe 226 (449)
T 2npp_B 161 QKFVLQLLELFDSEDPRERDFLKTTLHRIYG--KFLGLRAYIRKQINNIF------------YRFIYETEHHNGIAELLE 226 (449)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH--SCTTTHHHHHHHHHHHH------------HHHHHTCSCCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------------HHHhcccCCCCCHHHHHH
Q ss_pred HHhhc-------------------------CccChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchH---HHHH
Q 002235 210 HVDRV-------------------------SEWGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTA---VIYE 261 (949)
Q Consensus 210 ~l~~i-------------------------~~~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~a---V~~E 261 (949)
++..+ +..-....-.+..++..++..||.....+++.|...=--+++. ..+.
T Consensus 227 ilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~ 306 (449)
T 2npp_B 227 ILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLN 306 (449)
T ss_dssp HHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHH
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHH-
Q 002235 262 CAGTLVSLSSAPTAIRAAANTYSQLLLSQSDNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIV- 340 (949)
Q Consensus 262 aa~~l~~l~~~~~~l~~~a~~li~lll~~~d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL- 340 (949)
=..-++...+ |...+.+..++.+.+- +|++++...|..+||.+.
T Consensus 307 eleeile~~~-~~ef~~i~~~lF~~la----------------------------------~ci~S~hfqVAErAL~~w~ 351 (449)
T 2npp_B 307 ELEEILDVIE-PSEFVKIMEPLFRQLA----------------------------------KCVSSPHFQVAERALYYWN 351 (449)
T ss_dssp HHHHHHTTCC-HHHHHHHHHHHHHHHH----------------------------------HHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHH----------------------------------HHHcCCCHHHHHHHHHHHC
Q ss_pred ----HhhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHH
Q 002235 341 ----LELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVH 398 (949)
Q Consensus 341 ----~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~ 398 (949)
..+. .+|...|+..+...+.+....++ +..++..+..++..+...-|...+.|..
T Consensus 352 N~~i~~li-~~n~~~IlPii~p~L~~~s~~HW--n~~V~~la~~vlk~l~e~d~~lf~~c~~ 410 (449)
T 2npp_B 352 NEYIMSLI-SDNAAKILPIMFPSLYRNSKTHW--NKTIHGLIYNALKLFMEMNQKLFDDCTQ 410 (449)
T ss_dssp CHHHHHHH-HTTHHHHHHHHHHHHTSCTTCCS--STTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHH-HhchhhhHHhhHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHCHHHHHHHHH
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.73 E-value=4.2e+02 Score=26.67 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=8.7
Q ss_pred ccChhHHHHHHHHHHHh
Q 002235 216 EWGELLQMVVLELIRKV 232 (949)
Q Consensus 216 ~~~p~~q~~il~ll~~~ 232 (949)
..+|..|+..|.++...
T Consensus 56 ~~n~~v~l~aL~LLe~~ 72 (226)
T 3zyq_A 56 DKNPHVALYALEVMESV 72 (226)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34555555555554433
No 164
>2xfg_B Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=21.53 E-value=1.3e+02 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=31.2
Q ss_pred CCcEEEEEEE-EEecceeEEEEEEEecChhh---hcceEEEE
Q 002235 725 SDPVYAEAYV-TVHHYDIVLDVTVINRTKET---LQNLCLEL 762 (949)
Q Consensus 725 ~dp~Y~ea~v-~v~~~~ivld~~v~N~t~~t---LqNv~vel 762 (949)
+|.+||||-+ .-...-+-+.+.|.|++.-. |.+|++--
T Consensus 16 ~de~~vea~vn~~~~n~~~i~~~i~N~s~~Pa~~~~~ls~RY 57 (176)
T 2xfg_B 16 EDEIFVEAGVNASGNNFIEIKAIVNNKSGWPARVCENLSFRY 57 (176)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEECCCTTCCCBSSEEEEE
T ss_pred CCcEEEEEEeccCCCCeEEEEEEEEeCCCCCCcccCCeEEEE
Confidence 5789999988 45677799999999998754 78998864
No 165
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=21.37 E-value=1e+03 Score=27.92 Aligned_cols=117 Identities=16% Similarity=0.068 Sum_probs=81.9
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Q 002235 342 ELITPRNINEVVLMLKKEVVKTQSGELEKNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVRE 421 (949)
Q Consensus 342 ~l~~~~Nv~~Iv~~L~kel~~~~~~~~d~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ 421 (949)
...+.+....+|..+++ +.... ..++.|...-+.-|+.|+...|.....|+..|+.-+..... ....+=..|+.
T Consensus 127 s~Ld~~~~~~LV~aIL~-~~~W~----~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~-~~~~~H~~L~~ 200 (649)
T 3tj1_A 127 NRIESSRGTFLIQSIIN-FEKWW----ELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIK-QTVCHHDMLKY 200 (649)
T ss_dssp GGGCSGGGHHHHHHHHT-CTTGG----GSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHH-HHHHHHHHHHH
T ss_pred hhcCchhHHHHHHHHhC-Cchhc----cCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCc-ccHHHHHHHHH
Confidence 34444555677766653 21122 35678999999999999988888888999988887765322 12235578899
Q ss_pred HHHhCcccHHHHHHHHHHHhcccchH-----HHHHHHhhhcccCCCCCC
Q 002235 422 IIEMNPKLRVSIITRLLDNFYQIRAA-----RVCTCALWIIGEYCQSLS 465 (949)
Q Consensus 422 ii~~~p~~~~~~l~~L~~~l~~i~~~-----~v~~~~lwiLGEy~~~~~ 465 (949)
|++..|-....+...|...++....+ .-.+.++|+.+ |++...
T Consensus 201 Il~lvP~s~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~-Y~PeL~ 248 (649)
T 3tj1_A 201 FLRMIPSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRG-YCSELG 248 (649)
T ss_dssp HHHHCGGGHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHH-HCGGGH
T ss_pred HHHHcCCCHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHh-hchHHH
Confidence 99999998888888899888765532 23677788775 877554
No 166
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=20.80 E-value=4.3e+02 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=9.5
Q ss_pred cCCChhHHHHHHHHHHhc
Q 002235 181 TEQDPSAKRNAFLMLFTC 198 (949)
Q Consensus 181 ~d~d~~v~~~Al~~L~~i 198 (949)
...||.++..|+.+|..|
T Consensus 48 ~~~n~~vql~AL~LLe~~ 65 (148)
T 1mhq_A 48 QSPQEKEALYALTVLEMC 65 (148)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 445555555555555444
No 167
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=20.17 E-value=1.2e+03 Score=28.01 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=102.6
Q ss_pred cChhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHccCCC----hHHHHHHHHHHHHHHccCC-
Q 002235 217 WGELLQMVVLELIRKVCRTNKGEKGKYIKIIISLLNAPSTAVIYECAGTLVSLSSA----PTAIRAAANTYSQLLLSQS- 291 (949)
Q Consensus 217 ~~p~~q~~il~ll~~~~~~~p~~~~~li~~L~~lL~s~s~aV~~Eaa~~l~~l~~~----~~~l~~~a~~li~lll~~~- 291 (949)
.++..+..++.=+..+++...-....+++++.-+-+.++..|...+...+-.+... ...++.+..++.+.+-...
T Consensus 503 i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 582 (780)
T 1z5h_A 503 LSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAFDDDARAFCRSRMQFLTGKQD 582 (780)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46666777777666665554334456667665433445666777777766544221 1223333344444442111
Q ss_pred --chHHHHHHHHHHHHHHhhChhhHHHHHHhheeccCCCCHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccCCcc
Q 002235 292 --DNNVKLIVLDRLNELRSSHRDIMVDLIMDVLRALNSPNLDIRRKTLDIVLELITPRNINEVVLMLKKEVVKTQSGELE 369 (949)
Q Consensus 292 --d~nvr~iaL~~L~~l~~~~p~~l~~~~~~il~~L~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~~L~kel~~~~~~~~d 369 (949)
+.-+|-.++..+..+ .++..++ .. ..+.-...-++.+|...+....+-+++ ++.+.+ .+.+ +
T Consensus 583 ~~~~~~r~~~~~~a~~~--~~~~~~~-a~-~~f~~~~~i~~~lr~~v~~~~~~~g~~--~~~l~~----~~~~------~ 646 (780)
T 1z5h_A 583 ENLKIALGRVSRLYVMV--DESYAEE-MS-KLFKDFDSAEPEMRSSIATAYALVTGD--LKGLLE----KFRS------V 646 (780)
T ss_dssp HHHHHHHHHHHHHHHHH--CHHHHHH-HH-TTGGGGGGSCHHHHHHHHHHHHHHTCC--HHHHHH----HHHS------C
T ss_pred hHHHHHHHHHHHHHHhc--CCHHHHH-HH-HHHHhcCCCCHHHHHHHHHHHHHcCcH--HHHHHH----HHhc------C
Confidence 122344444433332 2344444 22 222222345788999999888887776 666554 3332 3
Q ss_pred CCHHHHHHHHHHHHHhHccCcccHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002235 370 KNGEYRQMLIQAIHSCAIKFPEVASTVVHLLMDFLGDSNVASAIDVIIFVREIIEMNPKLRVSIITRLLD 439 (949)
Q Consensus 370 ~~~e~r~~lv~aI~~la~kf~~~~~~~l~~L~~lL~~~~~~v~~e~i~~l~~ii~~~p~~~~~~l~~L~~ 439 (949)
.+.+-|..++.+++ |.+-| +.+.-+++.+-+ +..-.++....+..+. .+|.-++.+...+.+
T Consensus 647 ~~~~~~~~~l~al~--~~~~~----~~~~~~l~~~~~-~~i~~qd~~~~~~~~~-~~~~~~~~~~~~~~~ 708 (780)
T 1z5h_A 647 DRDEDRVRIISAFG--KLKSN----TDLSTVYGMVEK-TEIKKQDMISFFSSAL-ETLPGREFIFANLDR 708 (780)
T ss_dssp CSHHHHHHHHHHHT--TCCCH----HHHHHHHHHHHT-TSSCHHHHHHHHHHHT-TSHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHhc--cCCCH----HHHHHHHHHHhc-CCCCHHHHHHHHHHHH-hCcccHHHHHHHHHH
Confidence 45678888888886 22222 444444444333 3333344555555553 456544444444443
Done!