Query 002236
Match_columns 949
No_of_seqs 577 out of 3541
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 19:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0059 Lipid exporter ABCA1 a 100.0 2E-98 4E-103 929.2 40.8 803 80-947 45-883 (885)
2 TIGR01257 rim_protein retinal- 100.0 1.5E-93 3.2E-98 920.0 75.2 659 266-943 545-1281(2272)
3 TIGR01257 rim_protein retinal- 100.0 6.9E-91 1.5E-95 895.3 75.6 617 281-949 1612-2259(2272)
4 COG1131 CcmA ABC-type multidru 100.0 1.5E-54 3.3E-59 477.0 35.1 287 626-940 4-292 (293)
5 PRK13537 nodulation ABC transp 100.0 4.7E-54 1E-58 476.1 38.6 299 623-942 4-303 (306)
6 COG4152 ABC-type uncharacteriz 100.0 6E-55 1.3E-59 452.1 27.8 294 626-941 2-297 (300)
7 COG4555 NatA ABC-type Na+ tran 100.0 5.1E-56 1.1E-60 449.1 18.7 224 626-856 1-225 (245)
8 COG1125 OpuBA ABC-type proline 100.0 6.6E-55 1.4E-59 454.5 21.2 226 626-857 1-229 (309)
9 TIGR03522 GldA_ABC_ATP gliding 100.0 1.9E-52 4.2E-57 462.1 39.8 298 626-938 2-300 (301)
10 TIGR01188 drrA daunorubicin re 100.0 1.1E-52 2.4E-57 464.2 37.3 290 645-939 6-301 (302)
11 COG1126 GlnQ ABC-type polar am 100.0 1.1E-53 2.4E-58 437.8 25.5 221 626-854 2-226 (240)
12 PRK13536 nodulation factor exp 100.0 3.2E-52 6.9E-57 467.2 39.5 297 625-942 40-337 (340)
13 COG1135 AbcC ABC-type metal io 100.0 3.8E-53 8.2E-58 453.1 23.7 226 626-854 1-232 (339)
14 TIGR01288 nodI ATP-binding ABC 100.0 9.5E-51 2.1E-55 449.0 38.4 297 625-942 3-300 (303)
15 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-50 2.3E-55 421.5 23.8 223 624-853 6-235 (263)
16 COG3839 MalK ABC-type sugar tr 100.0 1E-49 2.2E-54 440.4 24.8 226 625-859 2-229 (338)
17 COG3842 PotA ABC-type spermidi 100.0 1.6E-49 3.5E-54 440.8 21.5 221 625-854 4-227 (352)
18 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-48 3.1E-53 437.6 29.3 224 626-853 1-230 (343)
19 COG1137 YhbG ABC-type (unclass 100.0 9.4E-50 2E-54 403.3 14.8 221 625-853 3-228 (243)
20 COG1116 TauB ABC-type nitrate/ 100.0 1.7E-48 3.6E-53 410.0 24.0 204 625-840 2-207 (248)
21 PRK11432 fbpC ferric transport 100.0 7.9E-48 1.7E-52 433.3 28.8 221 625-854 5-227 (351)
22 TIGR03265 PhnT2 putative 2-ami 100.0 9.6E-48 2.1E-52 433.1 28.9 221 625-854 3-225 (353)
23 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-47 2.4E-52 433.1 28.5 221 626-854 3-225 (356)
24 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-47 2.5E-52 404.7 26.9 217 627-851 1-219 (220)
25 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-47 2.8E-52 408.4 27.4 219 627-853 1-226 (235)
26 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-47 3.1E-52 432.7 28.4 221 626-855 5-230 (362)
27 COG1118 CysA ABC-type sulfate/ 100.0 2.8E-48 6E-53 414.7 21.2 229 626-863 2-237 (345)
28 COG1120 FepC ABC-type cobalami 100.0 6.6E-48 1.4E-52 411.9 23.7 218 626-851 2-226 (258)
29 cd03263 ABC_subfamily_A The AB 100.0 3.1E-47 6.7E-52 401.0 26.7 220 627-852 1-220 (220)
30 COG3638 ABC-type phosphate/pho 100.0 1.6E-47 3.4E-52 396.9 22.8 222 625-853 2-237 (258)
31 COG1122 CbiO ABC-type cobalt t 100.0 2.8E-47 6E-52 405.5 25.3 222 625-854 2-229 (235)
32 PRK11153 metN DL-methionine tr 100.0 5E-47 1.1E-51 426.2 28.5 225 626-854 1-231 (343)
33 cd03266 ABC_NatA_sodium_export 100.0 5.3E-47 1.1E-51 398.7 26.8 217 626-846 1-218 (218)
34 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-47 6.6E-52 405.0 24.4 216 625-852 3-226 (254)
35 COG1136 SalX ABC-type antimicr 100.0 7.2E-47 1.6E-51 396.8 26.7 213 626-842 1-220 (226)
36 PRK10851 sulfate/thiosulfate t 100.0 7.6E-47 1.7E-51 425.8 28.4 220 626-854 2-227 (353)
37 TIGR00960 3a0501s02 Type II (G 100.0 7E-47 1.5E-51 397.5 26.0 211 626-842 1-216 (216)
38 cd03259 ABC_Carb_Solutes_like 100.0 6.5E-47 1.4E-51 396.9 25.2 211 627-846 1-213 (213)
39 PRK09452 potA putrescine/sperm 100.0 1E-46 2.2E-51 427.3 28.7 222 624-854 12-235 (375)
40 PRK11607 potG putrescine trans 100.0 1.4E-46 3.1E-51 426.7 29.5 223 624-855 17-241 (377)
41 PRK13637 cbiO cobalt transport 100.0 2.2E-46 4.8E-51 411.3 29.5 226 626-853 2-234 (287)
42 COG1124 DppF ABC-type dipeptid 100.0 3.5E-47 7.6E-52 396.9 21.8 228 625-857 2-235 (252)
43 cd03258 ABC_MetN_methionine_tr 100.0 1.7E-46 3.7E-51 399.0 27.3 224 626-853 1-230 (233)
44 PRK11000 maltose/maltodextrin 100.0 1.6E-46 3.5E-51 425.8 28.6 219 626-853 3-223 (369)
45 COG2884 FtsE Predicted ATPase 100.0 3.1E-47 6.6E-52 382.7 20.0 215 626-847 1-220 (223)
46 COG1117 PstB ABC-type phosphat 100.0 3.4E-47 7.3E-52 388.5 20.3 223 625-854 6-238 (253)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-46 4.1E-51 399.1 26.9 219 627-853 1-232 (236)
48 cd03296 ABC_CysA_sulfate_impor 100.0 1.9E-46 4E-51 400.6 26.8 219 626-853 2-226 (239)
49 cd03218 ABC_YhbG The ABC trans 100.0 2.3E-46 4.9E-51 397.5 27.1 218 627-852 1-221 (232)
50 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.7E-46 8.1E-51 397.6 28.7 222 626-856 1-224 (236)
51 PRK09536 btuD corrinoid ABC tr 100.0 5.4E-46 1.2E-50 424.2 30.8 225 626-858 3-239 (402)
52 TIGR01186 proV glycine betaine 100.0 2E-46 4.3E-51 422.9 26.8 208 645-854 6-220 (363)
53 COG4175 ProV ABC-type proline/ 100.0 3.9E-47 8.5E-52 406.0 19.7 234 625-860 3-261 (386)
54 cd03264 ABC_drug_resistance_li 100.0 2.8E-46 6.1E-51 391.5 25.9 211 627-846 1-211 (211)
55 cd03256 ABC_PhnC_transporter A 100.0 3.9E-46 8.5E-51 397.6 27.3 220 627-853 1-234 (241)
56 cd03260 ABC_PstB_phosphate_tra 100.0 2.5E-46 5.5E-51 396.1 25.6 215 627-850 1-226 (227)
57 cd03301 ABC_MalK_N The N-termi 100.0 2.6E-46 5.7E-51 392.0 25.3 211 627-846 1-213 (213)
58 PRK13643 cbiO cobalt transport 100.0 6.4E-46 1.4E-50 407.9 29.3 225 626-853 1-233 (288)
59 PRK10070 glycine betaine trans 100.0 5.1E-46 1.1E-50 424.1 29.5 228 625-854 3-255 (400)
60 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.9E-46 8.5E-51 393.1 26.3 214 627-848 1-218 (220)
61 TIGR00972 3a0107s01c2 phosphat 100.0 7.2E-46 1.6E-50 398.0 28.8 221 626-853 1-232 (247)
62 PRK09493 glnQ glutamine ABC tr 100.0 6.5E-46 1.4E-50 396.5 28.2 220 626-853 1-225 (240)
63 PRK13634 cbiO cobalt transport 100.0 5.7E-46 1.2E-50 408.6 28.5 225 626-853 2-235 (290)
64 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.8E-46 1.3E-50 397.5 27.7 222 627-853 1-225 (242)
65 PRK13647 cbiO cobalt transport 100.0 7.8E-46 1.7E-50 404.4 28.9 220 625-851 3-225 (274)
66 COG0411 LivG ABC-type branched 100.0 7.5E-47 1.6E-51 394.7 19.9 222 625-854 3-240 (250)
67 PRK15079 oligopeptide ABC tran 100.0 7.7E-46 1.7E-50 414.4 29.3 233 624-857 6-255 (331)
68 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.3E-46 7.1E-51 392.7 24.2 211 627-842 1-218 (218)
69 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-45 2.4E-50 394.9 28.4 219 626-852 2-230 (242)
70 cd03269 ABC_putative_ATPase Th 100.0 6.8E-46 1.5E-50 388.3 26.1 209 627-846 1-210 (210)
71 TIGR02673 FtsE cell division A 100.0 7.2E-46 1.6E-50 389.0 25.7 209 626-841 1-214 (214)
72 cd03268 ABC_BcrA_bacitracin_re 100.0 6.9E-46 1.5E-50 387.7 25.3 207 627-846 1-208 (208)
73 PRK13641 cbiO cobalt transport 100.0 1.5E-45 3.2E-50 404.7 29.0 225 626-853 2-234 (287)
74 PRK13646 cbiO cobalt transport 100.0 1.8E-45 3.9E-50 403.9 28.9 225 626-853 2-235 (286)
75 PRK13650 cbiO cobalt transport 100.0 1.5E-45 3.2E-50 403.2 28.1 224 625-854 3-230 (279)
76 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-45 2.6E-50 389.1 26.3 217 627-853 1-221 (222)
77 PRK13651 cobalt transporter AT 100.0 1.6E-45 3.4E-50 407.8 28.2 225 626-853 2-254 (305)
78 PRK11264 putative amino-acid A 100.0 1.9E-45 4.1E-50 394.9 28.0 220 626-853 3-233 (250)
79 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-45 2.5E-50 394.7 25.9 220 626-852 1-234 (243)
80 PRK11831 putative ABC transpor 100.0 2.8E-45 6E-50 398.8 28.7 222 625-854 6-234 (269)
81 PRK11308 dppF dipeptide transp 100.0 2.5E-45 5.4E-50 409.8 28.8 234 625-859 4-250 (327)
82 TIGR03415 ABC_choXWV_ATP choli 100.0 1.8E-45 3.8E-50 417.2 27.9 209 644-854 36-255 (382)
83 PRK13636 cbiO cobalt transport 100.0 2.8E-45 6.1E-50 401.7 28.5 221 626-853 5-231 (283)
84 PRK13631 cbiO cobalt transport 100.0 3.4E-45 7.4E-50 407.6 29.5 226 625-853 20-265 (320)
85 PRK14268 phosphate ABC transpo 100.0 3.5E-45 7.6E-50 395.4 28.8 223 625-854 11-243 (258)
86 PRK13652 cbiO cobalt transport 100.0 3.4E-45 7.4E-50 399.8 29.0 222 625-853 2-227 (277)
87 PRK14267 phosphate ABC transpo 100.0 3.8E-45 8.2E-50 393.5 28.7 223 625-853 3-237 (253)
88 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-45 2.5E-50 402.0 24.8 219 628-854 26-251 (269)
89 cd03292 ABC_FtsE_transporter F 100.0 2E-45 4.4E-50 385.3 25.7 209 627-842 1-214 (214)
90 PRK10908 cell division protein 100.0 3E-45 6.4E-50 387.0 27.1 211 626-843 1-216 (222)
91 PRK11629 lolD lipoprotein tran 100.0 4.5E-45 9.9E-50 388.5 28.7 219 625-848 4-229 (233)
92 PRK10895 lipopolysaccharide AB 100.0 2.7E-45 6E-50 391.9 26.9 220 626-853 3-226 (241)
93 PRK13644 cbiO cobalt transport 100.0 3E-45 6.5E-50 399.8 27.7 220 626-853 1-224 (274)
94 PRK13635 cbiO cobalt transport 100.0 3.3E-45 7.1E-50 400.5 28.0 222 625-853 4-229 (279)
95 PRK13633 cobalt transporter AT 100.0 3.5E-45 7.6E-50 400.3 28.0 227 624-854 2-234 (280)
96 PRK14247 phosphate ABC transpo 100.0 5.3E-45 1.1E-49 391.7 28.7 222 626-853 3-234 (250)
97 cd03226 ABC_cobalt_CbiO_domain 100.0 1.9E-45 4E-50 383.9 24.0 203 628-843 1-205 (205)
98 cd03225 ABC_cobalt_CbiO_domain 100.0 2.6E-45 5.7E-50 384.0 24.7 208 628-841 1-211 (211)
99 PRK13638 cbiO cobalt transport 100.0 4.9E-45 1.1E-49 397.2 27.8 220 626-853 1-225 (271)
100 PRK14242 phosphate transporter 100.0 7.1E-45 1.5E-49 391.4 28.6 222 625-853 5-237 (253)
101 PRK10619 histidine/lysine/argi 100.0 8.4E-45 1.8E-49 392.1 28.9 222 625-853 4-241 (257)
102 PRK14273 phosphate ABC transpo 100.0 7.1E-45 1.5E-49 391.8 28.2 223 625-854 6-239 (254)
103 PRK11124 artP arginine transpo 100.0 8.3E-45 1.8E-49 388.4 28.1 219 626-852 2-229 (242)
104 cd03257 ABC_NikE_OppD_transpor 100.0 5.6E-45 1.2E-49 385.3 26.5 218 626-846 1-228 (228)
105 PRK13548 hmuV hemin importer A 100.0 1.1E-44 2.3E-49 392.0 28.7 220 626-853 2-230 (258)
106 PRK13649 cbiO cobalt transport 100.0 9.1E-45 2E-49 396.7 28.5 225 626-853 2-234 (280)
107 cd03262 ABC_HisP_GlnQ_permease 100.0 5E-45 1.1E-49 382.1 25.0 208 627-842 1-213 (213)
108 PRK11022 dppD dipeptide transp 100.0 8.1E-45 1.7E-49 405.6 28.0 232 626-859 3-249 (326)
109 PRK11248 tauB taurine transpor 100.0 8.8E-45 1.9E-49 392.2 26.8 212 626-849 1-216 (255)
110 PRK11300 livG leucine/isoleuci 100.0 1.2E-44 2.6E-49 389.9 27.6 221 625-853 4-243 (255)
111 PRK13639 cbiO cobalt transport 100.0 1.5E-44 3.2E-49 394.5 28.6 220 626-853 1-226 (275)
112 PRK14256 phosphate ABC transpo 100.0 1.6E-44 3.6E-49 388.6 28.5 224 625-854 3-237 (252)
113 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-44 2.3E-49 382.0 26.5 212 627-843 2-220 (221)
114 PRK14274 phosphate ABC transpo 100.0 1.9E-44 4.1E-49 389.8 28.9 224 624-854 10-244 (259)
115 PRK10744 pstB phosphate transp 100.0 1.9E-44 4.1E-49 390.2 28.7 223 624-853 11-244 (260)
116 cd03267 ABC_NatA_like Similar 100.0 7.4E-45 1.6E-49 388.1 25.2 201 644-846 33-236 (236)
117 PRK11614 livF leucine/isoleuci 100.0 1.3E-44 2.8E-49 385.8 26.4 219 625-853 4-226 (237)
118 TIGR03410 urea_trans_UrtE urea 100.0 1E-44 2.2E-49 384.6 25.6 215 627-852 1-220 (230)
119 PRK13632 cbiO cobalt transport 100.0 1.5E-44 3.2E-49 393.5 27.2 222 625-853 6-231 (271)
120 PRK14241 phosphate transporter 100.0 2.8E-44 6.1E-49 388.2 29.0 222 626-853 4-242 (258)
121 PRK15112 antimicrobial peptide 100.0 1.8E-44 3.9E-49 392.1 27.4 229 625-854 3-240 (267)
122 PRK14270 phosphate ABC transpo 100.0 2.8E-44 6.1E-49 386.5 28.7 223 624-853 2-235 (251)
123 PRK14235 phosphate transporter 100.0 2.8E-44 6.1E-49 390.5 29.0 223 624-853 17-251 (267)
124 PRK14269 phosphate ABC transpo 100.0 3E-44 6.6E-49 385.4 28.4 221 626-853 2-230 (246)
125 PRK11231 fecE iron-dicitrate t 100.0 2E-44 4.3E-49 388.8 27.1 219 626-852 2-226 (255)
126 PRK09473 oppD oligopeptide tra 100.0 2.3E-44 4.9E-49 402.6 28.3 234 624-859 10-257 (330)
127 PRK14248 phosphate ABC transpo 100.0 4.3E-44 9.3E-49 389.0 29.5 223 624-853 19-252 (268)
128 PRK10584 putative ABC transpor 100.0 2.9E-44 6.2E-49 380.7 27.2 215 625-844 5-226 (228)
129 TIGR03005 ectoine_ehuA ectoine 100.0 2.6E-44 5.7E-49 387.0 27.3 220 627-854 1-237 (252)
130 PRK14245 phosphate ABC transpo 100.0 4.5E-44 9.7E-49 384.7 28.9 222 625-853 2-234 (250)
131 PRK13645 cbiO cobalt transport 100.0 2.9E-44 6.3E-49 394.7 27.9 225 626-853 6-240 (289)
132 PRK13648 cbiO cobalt transport 100.0 3.4E-44 7.3E-49 390.2 28.0 222 625-853 6-231 (269)
133 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.8E-44 4E-49 377.8 25.0 209 627-846 1-211 (211)
134 PRK14259 phosphate ABC transpo 100.0 4.3E-44 9.3E-49 389.6 28.6 222 624-853 11-253 (269)
135 TIGR02769 nickel_nikE nickel i 100.0 3.2E-44 7E-49 389.5 27.5 227 626-853 2-240 (265)
136 PRK10575 iron-hydroxamate tran 100.0 3.3E-44 7.2E-49 389.4 27.4 220 625-852 10-236 (265)
137 cd03300 ABC_PotA_N PotA is an 100.0 3.1E-44 6.7E-49 382.1 26.6 219 627-854 1-221 (232)
138 PRK13640 cbiO cobalt transport 100.0 3.4E-44 7.5E-49 393.0 27.7 222 625-853 4-232 (282)
139 cd03299 ABC_ModC_like Archeal 100.0 4.1E-44 8.9E-49 382.0 27.5 217 627-853 1-219 (235)
140 cd03235 ABC_Metallic_Cations A 100.0 1.2E-44 2.6E-49 379.8 22.9 205 629-846 2-213 (213)
141 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-42 2.5E-47 448.3 46.2 217 625-848 758-988 (1394)
142 TIGR03873 F420-0_ABC_ATP propo 100.0 3.8E-44 8.2E-49 386.8 27.3 218 627-852 2-225 (256)
143 PRK14250 phosphate ABC transpo 100.0 3E-44 6.4E-49 384.5 26.2 216 626-853 3-221 (241)
144 TIGR01978 sufC FeS assembly AT 100.0 3.8E-44 8.3E-49 382.7 26.9 220 627-853 1-234 (243)
145 PRK13642 cbiO cobalt transport 100.0 5.2E-44 1.1E-48 390.5 28.3 223 626-854 4-230 (277)
146 PRK14240 phosphate transporter 100.0 6.3E-44 1.4E-48 383.4 28.5 221 626-853 3-234 (250)
147 PRK15093 antimicrobial peptide 100.0 4.6E-44 9.9E-49 400.3 28.4 230 626-857 3-252 (330)
148 COG4586 ABC-type uncharacteriz 100.0 7E-45 1.5E-49 382.6 20.3 302 626-941 3-323 (325)
149 PRK14239 phosphate transporter 100.0 7.9E-44 1.7E-48 382.8 28.8 222 626-854 5-237 (252)
150 PRK14262 phosphate ABC transpo 100.0 7.6E-44 1.6E-48 382.8 28.4 222 626-854 3-235 (250)
151 PRK10253 iron-enterobactin tra 100.0 5.3E-44 1.2E-48 387.8 27.2 221 625-853 6-233 (265)
152 PRK10771 thiQ thiamine transpo 100.0 5.3E-44 1.2E-48 380.1 26.7 217 626-853 1-219 (232)
153 TIGR00968 3a0106s01 sulfate AB 100.0 6E-44 1.3E-48 381.2 27.1 218 627-853 1-220 (237)
154 PRK14251 phosphate ABC transpo 100.0 9E-44 1.9E-48 382.4 28.3 222 625-853 3-235 (251)
155 PRK09984 phosphonate/organopho 100.0 7.6E-44 1.6E-48 385.7 27.1 219 625-851 3-240 (262)
156 PRK14237 phosphate transporter 100.0 1.5E-43 3.3E-48 384.8 29.4 224 623-853 17-251 (267)
157 PRK14249 phosphate ABC transpo 100.0 1.5E-43 3.3E-48 380.8 28.9 223 625-854 3-236 (251)
158 PRK11144 modC molybdate transp 100.0 7E-44 1.5E-48 402.1 27.5 213 626-855 1-220 (352)
159 PRK14261 phosphate ABC transpo 100.0 1.1E-43 2.4E-48 382.3 27.8 223 625-854 5-238 (253)
160 COG0410 LivF ABC-type branched 100.0 5E-44 1.1E-48 371.0 23.8 221 625-854 2-227 (237)
161 TIGR03740 galliderm_ABC gallid 100.0 1E-43 2.2E-48 375.6 26.4 209 627-850 1-210 (223)
162 PRK14253 phosphate ABC transpo 100.0 1.4E-43 3.1E-48 380.5 28.0 221 626-853 3-233 (249)
163 TIGR01277 thiQ thiamine ABC tr 100.0 9.4E-44 2E-48 373.4 25.7 210 627-847 1-212 (213)
164 PRK11247 ssuB aliphatic sulfon 100.0 9.7E-44 2.1E-48 384.6 26.6 207 625-849 11-219 (257)
165 PRK14272 phosphate ABC transpo 100.0 2E-43 4.4E-48 379.7 28.4 222 626-853 4-236 (252)
166 cd03297 ABC_ModC_molybdenum_tr 100.0 9.8E-44 2.1E-48 373.4 25.3 204 630-846 4-214 (214)
167 TIGR02142 modC_ABC molybdenum 100.0 1.1E-43 2.4E-48 400.8 27.4 213 631-855 4-223 (354)
168 PRK11701 phnK phosphonate C-P 100.0 2E-43 4.3E-48 381.6 27.7 222 625-853 5-241 (258)
169 PRK14236 phosphate transporter 100.0 3.2E-43 6.9E-48 383.2 28.9 223 624-853 23-256 (272)
170 PRK14260 phosphate ABC transpo 100.0 3E-43 6.6E-48 380.5 28.0 222 625-853 6-243 (259)
171 cd03251 ABCC_MsbA MsbA is an e 100.0 1.7E-43 3.6E-48 376.0 25.4 220 627-856 1-228 (234)
172 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-43 2.6E-48 378.1 23.9 219 627-855 1-227 (237)
173 PRK14244 phosphate ABC transpo 100.0 3.1E-43 6.8E-48 378.4 27.4 221 627-854 6-238 (251)
174 PRK14238 phosphate transporter 100.0 4.1E-43 8.8E-48 382.3 28.3 223 624-853 22-255 (271)
175 PRK14254 phosphate ABC transpo 100.0 4.7E-43 1E-47 384.6 29.0 222 624-853 37-269 (285)
176 PRK14275 phosphate ABC transpo 100.0 4.4E-43 9.5E-48 385.0 28.7 224 624-854 37-271 (286)
177 PRK14255 phosphate ABC transpo 100.0 7.9E-43 1.7E-47 375.3 28.9 223 625-854 4-237 (252)
178 PRK10762 D-ribose transporter 100.0 2.1E-43 4.6E-48 415.5 26.1 219 625-851 3-228 (501)
179 PRK14243 phosphate transporter 100.0 6E-43 1.3E-47 379.6 27.5 221 625-853 9-248 (264)
180 PRK14246 phosphate ABC transpo 100.0 9.2E-43 2E-47 376.9 28.5 224 625-854 9-242 (257)
181 cd03254 ABCC_Glucan_exporter_l 100.0 4.5E-43 9.7E-48 371.6 25.5 220 626-856 2-229 (229)
182 PRK14271 phosphate ABC transpo 100.0 1.3E-42 2.8E-47 379.5 29.1 223 625-854 20-252 (276)
183 PRK10418 nikD nickel transport 100.0 9.1E-43 2E-47 375.8 27.6 219 626-854 4-231 (254)
184 PRK13549 xylose transporter AT 100.0 3.5E-43 7.5E-48 414.2 26.3 219 625-851 4-230 (506)
185 PRK14258 phosphate ABC transpo 100.0 1.4E-42 2.9E-47 376.0 28.6 221 626-853 7-245 (261)
186 TIGR03608 L_ocin_972_ABC putat 100.0 3.9E-43 8.4E-48 366.0 23.4 200 629-837 1-206 (206)
187 PRK14263 phosphate ABC transpo 100.0 1.5E-42 3.2E-47 376.1 28.7 221 625-853 7-245 (261)
188 cd03234 ABCG_White The White s 100.0 7.7E-43 1.7E-47 369.8 25.6 215 626-846 3-226 (226)
189 PRK13547 hmuV hemin importer A 100.0 8.7E-43 1.9E-47 380.2 26.7 219 626-852 1-243 (272)
190 PRK14266 phosphate ABC transpo 100.0 1.4E-42 3.1E-47 372.9 28.1 222 626-854 3-235 (250)
191 PRK10261 glutathione transport 100.0 8.5E-43 1.8E-47 420.0 29.3 229 625-854 312-554 (623)
192 TIGR02770 nickel_nikD nickel i 100.0 6.6E-43 1.4E-47 371.4 24.5 207 647-854 1-216 (230)
193 PRK09700 D-allose transporter 100.0 6.7E-43 1.5E-47 412.1 27.0 219 625-851 4-232 (510)
194 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-42 3.2E-47 373.4 27.2 222 626-854 3-239 (253)
195 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-42 2.6E-47 410.0 28.6 215 625-851 10-227 (510)
196 PRK14265 phosphate ABC transpo 100.0 2.3E-42 5.1E-47 377.0 28.8 221 625-853 19-258 (274)
197 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.1E-43 2E-47 371.5 24.9 220 627-855 1-228 (238)
198 PRK13538 cytochrome c biogenes 100.0 1E-42 2.3E-47 363.4 24.3 201 626-837 1-202 (204)
199 PRK10419 nikE nickel transport 100.0 2.3E-42 5E-47 375.9 27.4 227 626-853 3-241 (268)
200 COG0444 DppD ABC-type dipeptid 100.0 1E-42 2.2E-47 377.5 24.3 232 627-860 2-250 (316)
201 PRK14257 phosphate ABC transpo 100.0 3.8E-42 8.2E-47 384.4 29.6 225 624-853 78-313 (329)
202 TIGR02982 heterocyst_DevA ABC 100.0 2.1E-42 4.5E-47 365.0 26.0 211 627-842 2-219 (220)
203 PRK14252 phosphate ABC transpo 100.0 3.6E-42 7.8E-47 373.4 28.5 222 625-853 15-249 (265)
204 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-42 2.7E-47 366.1 23.7 206 627-846 3-220 (220)
205 PRK10261 glutathione transport 100.0 1.7E-42 3.8E-47 417.3 28.2 228 624-853 10-258 (623)
206 PRK10247 putative ABC transpor 100.0 1.6E-42 3.4E-47 367.6 24.2 212 625-847 6-221 (225)
207 TIGR01184 ntrCD nitrate transp 100.0 1.3E-42 2.8E-47 369.5 23.0 198 648-851 1-202 (230)
208 CHL00131 ycf16 sulfate ABC tra 100.0 6.7E-42 1.5E-46 367.9 28.1 220 625-851 6-239 (252)
209 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-42 2.4E-47 347.2 19.9 217 626-854 1-220 (231)
210 PRK13543 cytochrome c biogenes 100.0 6.2E-42 1.3E-46 360.3 25.7 202 625-839 10-212 (214)
211 PRK14264 phosphate ABC transpo 100.0 1.1E-41 2.5E-46 377.1 29.1 224 623-853 42-289 (305)
212 PRK15056 manganese/iron transp 100.0 6.5E-42 1.4E-46 373.0 26.5 218 625-852 5-229 (272)
213 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.5E-42 1.4E-46 362.8 25.6 201 627-846 23-224 (224)
214 cd03253 ABCC_ATM1_transporter 100.0 7.1E-42 1.5E-46 364.0 25.9 217 627-854 1-225 (236)
215 TIGR02324 CP_lyasePhnL phospho 100.0 6.8E-42 1.5E-46 361.6 25.4 211 626-837 1-222 (224)
216 TIGR03269 met_CoM_red_A2 methy 100.0 7.5E-42 1.6E-46 404.1 28.6 228 625-854 278-518 (520)
217 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.9E-42 1.1E-46 374.6 24.8 212 627-854 3-226 (275)
218 PLN03140 ABC transporter G fam 100.0 3.1E-40 6.7E-45 425.0 45.4 227 626-856 867-1117(1470)
219 TIGR03269 met_CoM_red_A2 methy 100.0 5.7E-42 1.2E-46 405.1 26.9 221 627-855 1-260 (520)
220 cd03233 ABC_PDR_domain1 The pl 100.0 7.9E-42 1.7E-46 356.7 24.9 194 626-846 3-202 (202)
221 PRK03695 vitamin B12-transport 100.0 6.4E-42 1.4E-46 368.3 24.8 211 628-852 2-221 (248)
222 PRK13546 teichoic acids export 100.0 1.8E-41 3.8E-46 368.4 28.4 219 625-857 3-236 (264)
223 PRK11288 araG L-arabinose tran 100.0 8.1E-42 1.8E-46 402.1 27.6 216 625-848 3-224 (501)
224 TIGR02633 xylG D-xylose ABC tr 100.0 6.9E-42 1.5E-46 402.5 26.8 218 626-850 1-227 (500)
225 cd03244 ABCC_MRP_domain2 Domai 100.0 5.6E-42 1.2E-46 361.3 23.3 208 627-847 3-220 (221)
226 COG1123 ATPase components of v 100.0 5.4E-42 1.2E-46 395.3 24.9 236 623-859 277-525 (539)
227 PRK10982 galactose/methyl gala 100.0 6E-42 1.3E-46 402.3 25.7 215 629-851 1-221 (491)
228 PRK09580 sufC cysteine desulfu 100.0 2E-41 4.2E-46 363.2 26.8 221 626-853 1-235 (248)
229 PRK15134 microcin C ABC transp 100.0 7.4E-42 1.6E-46 404.9 25.8 227 625-853 274-515 (529)
230 cd03248 ABCC_TAP TAP, the Tran 100.0 5E-42 1.1E-46 363.1 21.4 210 624-842 9-226 (226)
231 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-41 3.8E-46 354.5 24.9 202 625-848 5-207 (207)
232 cd03231 ABC_CcmA_heme_exporter 100.0 1E-41 2.2E-46 355.3 22.9 197 627-837 1-198 (201)
233 PRK15134 microcin C ABC transp 100.0 2.1E-41 4.5E-46 401.1 28.4 227 625-853 4-246 (529)
234 PRK13549 xylose transporter AT 100.0 1.1E-41 2.4E-46 401.5 24.9 223 625-851 258-492 (506)
235 COG1123 ATPase components of v 100.0 2.8E-41 6.1E-46 389.3 27.6 237 625-863 4-254 (539)
236 COG4598 HisP ABC-type histidin 100.0 1.8E-42 3.9E-47 344.5 15.0 222 625-854 5-242 (256)
237 cd03213 ABCG_EPDR ABCG transpo 100.0 3.5E-41 7.5E-46 349.7 24.2 188 626-846 3-194 (194)
238 cd03288 ABCC_SUR2 The SUR doma 100.0 2.9E-41 6.3E-46 364.9 24.4 219 625-854 18-244 (257)
239 PRK09544 znuC high-affinity zi 100.0 3.8E-41 8.2E-46 363.2 25.2 202 625-852 3-208 (251)
240 cd03247 ABCC_cytochrome_bd The 100.0 2.9E-41 6.3E-46 345.3 22.9 178 627-846 1-178 (178)
241 PRK13539 cytochrome c biogenes 100.0 3.2E-41 6.9E-46 353.2 23.3 197 626-838 2-199 (207)
242 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-41 4E-46 398.9 24.0 221 625-849 256-488 (500)
243 PRK09700 D-allose transporter 100.0 2.7E-41 5.8E-46 398.5 25.0 215 625-848 264-493 (510)
244 COG2274 SunT ABC-type bacterio 100.0 2.1E-41 4.5E-46 407.8 24.3 219 624-854 469-697 (709)
245 COG1129 MglA ABC-type sugar tr 100.0 4E-41 8.7E-46 385.8 25.5 216 625-848 7-229 (500)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 5.4E-41 1.2E-45 341.9 23.3 172 627-842 1-173 (173)
247 cd03215 ABC_Carb_Monos_II This 100.0 5.7E-41 1.2E-45 344.5 23.2 173 626-842 4-182 (182)
248 cd03229 ABC_Class3 This class 100.0 4.1E-41 8.8E-46 344.4 22.0 173 627-841 1-178 (178)
249 PRK10938 putative molybdenum t 100.0 3.8E-41 8.2E-46 395.3 24.5 211 626-852 3-223 (490)
250 TIGR01189 ccmA heme ABC export 100.0 5.1E-41 1.1E-45 348.9 22.4 196 627-836 1-197 (198)
251 PRK13545 tagH teichoic acids e 100.0 1.6E-40 3.5E-45 384.4 28.2 215 625-856 20-235 (549)
252 PLN03211 ABC transporter G-25; 100.0 4.9E-41 1.1E-45 405.6 25.0 217 629-856 71-299 (659)
253 PRK11174 cysteine/glutathione 100.0 8.6E-41 1.9E-45 400.4 25.9 216 626-855 349-574 (588)
254 COG4525 TauB ABC-type taurine 100.0 5.9E-41 1.3E-45 337.9 20.0 222 626-858 3-228 (259)
255 COG3845 ABC-type uncharacteriz 100.0 9.1E-41 2E-45 376.0 23.6 214 625-846 3-222 (501)
256 PRK13540 cytochrome c biogenes 100.0 1.2E-40 2.6E-45 346.8 22.6 196 626-835 1-197 (200)
257 cd03232 ABC_PDR_domain2 The pl 100.0 2E-40 4.3E-45 343.4 23.7 185 626-846 3-192 (192)
258 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2E-40 4.4E-45 404.0 27.0 216 625-855 450-675 (686)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.7E-40 5.9E-45 344.5 24.1 186 627-852 1-192 (200)
260 TIGR01166 cbiO cobalt transpor 100.0 1E-40 2.2E-45 344.2 20.7 180 645-827 5-190 (190)
261 cd03214 ABC_Iron-Siderophores_ 100.0 1.1E-40 2.4E-45 341.7 20.1 177 628-846 1-180 (180)
262 KOG0058 Peptide exporter, ABC 100.0 1.1E-40 2.3E-45 389.4 22.4 222 625-857 464-695 (716)
263 cd03246 ABCC_Protease_Secretio 100.0 2.3E-40 5.1E-45 337.2 22.2 171 627-842 1-173 (173)
264 PRK11160 cysteine/glutathione 100.0 2.3E-40 4.9E-45 395.9 25.8 218 625-856 337-565 (574)
265 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-40 2.7E-45 407.3 23.9 218 625-856 476-703 (710)
266 PRK11176 lipid transporter ATP 100.0 2E-40 4.3E-45 396.7 24.7 220 626-856 341-570 (582)
267 cd03228 ABCC_MRP_Like The MRP 100.0 2.6E-40 5.6E-45 336.3 21.7 170 627-841 1-171 (171)
268 PRK10762 D-ribose transporter 100.0 2.9E-40 6.2E-45 389.0 24.7 215 625-851 256-482 (501)
269 KOG0055 Multidrug/pheromone ex 100.0 1.3E-40 2.9E-45 406.9 21.9 222 625-857 349-580 (1228)
270 PRK10790 putative multidrug tr 100.0 5E-40 1.1E-44 394.2 26.2 217 625-855 339-565 (592)
271 TIGR03375 type_I_sec_LssB type 100.0 5.2E-40 1.1E-44 400.9 26.5 220 625-856 462-691 (694)
272 PRK11288 araG L-arabinose tran 100.0 3.3E-40 7.2E-45 388.5 23.6 214 626-850 257-482 (501)
273 COG4988 CydD ABC-type transpor 100.0 3.3E-40 7.2E-45 379.1 22.8 217 627-856 321-546 (559)
274 TIGR01187 potA spermidine/putr 100.0 4.8E-40 1E-44 367.2 23.2 189 663-854 1-191 (325)
275 TIGR00958 3a01208 Conjugate Tr 100.0 4.3E-40 9.3E-45 402.3 24.9 219 625-856 477-705 (711)
276 COG4181 Predicted ABC-type tra 100.0 3.9E-40 8.4E-45 326.0 19.1 214 626-844 6-226 (228)
277 TIGR03771 anch_rpt_ABC anchore 100.0 9.1E-40 2E-44 346.1 23.2 194 653-853 1-201 (223)
278 COG4604 CeuD ABC-type enteroch 100.0 5E-41 1.1E-45 339.1 12.2 220 626-853 1-225 (252)
279 PRK10982 galactose/methyl gala 100.0 7.8E-40 1.7E-44 384.4 24.4 215 625-848 249-475 (491)
280 COG4161 ArtP ABC-type arginine 100.0 4.1E-40 8.9E-45 322.7 18.2 218 626-851 2-228 (242)
281 PRK15439 autoinducer 2 ABC tra 100.0 1E-39 2.2E-44 385.2 24.8 215 625-851 267-490 (510)
282 TIGR01842 type_I_sec_PrtD type 100.0 2.1E-39 4.6E-44 385.2 27.6 220 625-854 315-543 (544)
283 TIGR01193 bacteriocin_ABC ABC- 100.0 7.5E-40 1.6E-44 400.3 24.3 219 625-856 472-700 (708)
284 COG1132 MdlB ABC-type multidru 100.0 1.5E-39 3.3E-44 388.2 25.7 216 626-854 328-553 (567)
285 PRK15064 ABC transporter ATP-b 100.0 2.5E-39 5.3E-44 383.6 26.8 208 626-852 1-241 (530)
286 TIGR01192 chvA glucan exporter 100.0 2.3E-39 5E-44 388.0 26.7 220 626-856 334-561 (585)
287 COG4674 Uncharacterized ABC-ty 100.0 6.1E-40 1.3E-44 330.7 17.8 222 625-854 4-236 (249)
288 TIGR01846 type_I_sec_HlyB type 100.0 2.1E-39 4.6E-44 395.5 25.8 220 625-856 454-683 (694)
289 PRK13657 cyclic beta-1,2-gluca 100.0 2.5E-39 5.4E-44 388.0 25.5 217 626-855 334-560 (588)
290 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-39 4.4E-44 338.2 21.6 193 627-841 1-204 (204)
291 cd03216 ABC_Carb_Monos_I This 100.0 4.2E-39 9.1E-44 325.4 23.0 159 627-844 1-162 (163)
292 PRK10789 putative multidrug tr 100.0 3.1E-39 6.8E-44 385.7 25.6 219 626-856 313-541 (569)
293 COG4987 CydC ABC-type transpor 100.0 2.9E-40 6.2E-45 374.2 15.5 219 626-856 336-564 (573)
294 cd03290 ABCC_SUR1_N The SUR do 100.0 3.4E-39 7.4E-44 339.9 22.6 200 628-841 2-218 (218)
295 TIGR02204 MsbA_rel ABC transpo 100.0 3.3E-39 7.2E-44 385.6 25.5 220 625-855 336-565 (576)
296 PRK15177 Vi polysaccharide exp 100.0 2.8E-39 6.1E-44 340.4 21.9 194 646-856 1-195 (213)
297 PRK15064 ABC transporter ATP-b 100.0 4.4E-39 9.5E-44 381.4 26.2 208 625-856 318-528 (530)
298 PRK11819 putative ABC transpor 100.0 5E-39 1.1E-43 382.9 26.7 207 625-851 5-248 (556)
299 COG4559 ABC-type hemin transpo 100.0 2.4E-39 5.2E-44 330.4 20.4 219 626-852 1-229 (259)
300 KOG0057 Mitochondrial Fe/S clu 100.0 3E-39 6.5E-44 366.1 21.6 215 625-853 350-574 (591)
301 PRK10535 macrolide transporter 100.0 1.4E-38 3.1E-43 384.9 28.9 223 625-852 3-231 (648)
302 TIGR00955 3a01204 The Eye Pigm 100.0 4.3E-39 9.4E-44 387.6 24.2 209 644-856 37-259 (617)
303 PRK13541 cytochrome c biogenes 100.0 6.6E-39 1.4E-43 332.5 21.7 191 626-834 1-192 (195)
304 TIGR02203 MsbA_lipidA lipid A 100.0 5.9E-39 1.3E-43 383.0 23.7 219 625-854 329-557 (571)
305 COG4608 AppF ABC-type oligopep 100.0 4.2E-39 9E-44 342.9 18.9 199 625-860 3-206 (268)
306 PRK10938 putative molybdenum t 100.0 8.1E-39 1.7E-43 375.7 23.1 216 624-846 258-485 (490)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-38 6.5E-43 376.0 27.1 208 625-852 3-247 (552)
308 PRK11819 putative ABC transpor 100.0 3.3E-38 7.1E-43 375.9 26.6 209 624-853 322-533 (556)
309 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.4E-38 5.1E-43 340.6 22.6 190 646-852 8-206 (246)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 2.8E-38 6.2E-43 320.3 21.6 164 627-841 1-164 (166)
311 KOG0055 Multidrug/pheromone ex 100.0 8.6E-39 1.9E-43 391.1 20.9 225 626-861 987-1221(1228)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.7E-38 1.5E-42 343.3 25.9 203 623-854 36-248 (282)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.6E-38 1.4E-42 373.1 26.6 209 624-853 320-531 (552)
314 COG1134 TagH ABC-type polysacc 100.0 7.9E-38 1.7E-42 327.5 23.5 200 644-856 39-239 (249)
315 PLN03232 ABC transporter C fam 100.0 2.9E-38 6.3E-43 410.9 24.9 220 625-857 1233-1462(1495)
316 PLN03130 ABC transporter C fam 100.0 5.5E-38 1.2E-42 409.0 26.1 218 625-855 1236-1463(1622)
317 PTZ00265 multidrug resistance 100.0 6.8E-38 1.5E-42 404.8 24.5 218 626-854 1165-1453(1466)
318 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.3E-38 1.4E-42 339.0 19.8 200 630-844 4-218 (255)
319 COG4172 ABC-type uncharacteriz 100.0 1.6E-37 3.5E-42 340.2 22.6 234 624-859 274-522 (534)
320 TIGR02857 CydD thiol reductant 100.0 1.1E-37 2.5E-42 369.1 23.1 200 626-837 320-529 (529)
321 PRK10636 putative ABC transpor 100.0 4.2E-37 9.1E-42 371.4 25.9 205 624-853 310-517 (638)
322 COG4148 ModC ABC-type molybdat 100.0 4.6E-38 1E-42 331.6 15.1 197 650-854 16-219 (352)
323 TIGR00957 MRP_assoc_pro multi 100.0 3.5E-37 7.5E-42 401.4 26.7 217 625-854 1283-1509(1522)
324 PTZ00243 ABC transporter; Prov 100.0 3.8E-37 8.3E-42 400.5 26.6 217 625-854 1307-1534(1560)
325 COG4619 ABC-type uncharacteriz 100.0 6.7E-38 1.4E-42 309.3 14.3 201 644-851 15-218 (223)
326 PRK13409 putative ATPase RIL; 100.0 5.8E-37 1.3E-41 366.2 24.5 196 625-847 339-536 (590)
327 PTZ00265 multidrug resistance 100.0 3.7E-37 8.1E-42 397.9 24.3 210 626-840 382-655 (1466)
328 PRK11147 ABC transporter ATPas 100.0 1E-36 2.3E-41 368.2 25.7 207 624-851 317-526 (635)
329 PRK10522 multidrug transporter 100.0 9.4E-37 2E-41 362.8 24.7 201 626-845 322-530 (547)
330 TIGR02868 CydC thiol reductant 100.0 3.5E-37 7.6E-42 364.9 20.8 187 626-824 334-529 (529)
331 TIGR01194 cyc_pep_trnsptr cycl 100.0 1E-36 2.2E-41 363.1 24.8 207 625-845 336-551 (555)
332 PRK10636 putative ABC transpor 100.0 3.5E-36 7.6E-41 363.4 27.1 206 626-851 1-234 (638)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2E-36 4.4E-41 300.1 20.5 144 627-841 1-144 (144)
334 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-36 2.8E-41 392.3 24.3 210 644-855 73-302 (1394)
335 COG1101 PhnK ABC-type uncharac 100.0 1.3E-36 2.7E-41 311.1 18.4 221 626-847 1-232 (263)
336 PLN03073 ABC transporter F fam 100.0 9.3E-36 2E-40 362.1 27.5 206 625-854 507-715 (718)
337 TIGR01271 CFTR_protein cystic 100.0 5.1E-36 1.1E-40 389.6 26.6 216 625-854 1216-1441(1490)
338 COG4172 ABC-type uncharacteriz 100.0 4.5E-36 9.7E-41 328.9 20.8 235 625-861 5-255 (534)
339 COG1119 ModF ABC-type molybden 100.0 2.8E-36 6.1E-41 315.5 17.6 217 623-847 28-256 (257)
340 KOG0056 Heavy metal exporter H 100.0 7.5E-37 1.6E-41 339.3 13.5 221 625-859 536-767 (790)
341 PLN03140 ABC transporter G fam 100.0 4.4E-36 9.6E-41 386.7 20.9 211 644-856 177-430 (1470)
342 COG4167 SapF ABC-type antimicr 100.0 8.9E-36 1.9E-40 297.5 18.2 228 626-854 4-240 (267)
343 PRK11147 ABC transporter ATPas 100.0 3.9E-35 8.4E-40 354.5 27.3 204 626-851 3-241 (635)
344 KOG0061 Transporter, ABC super 100.0 1.3E-35 2.9E-40 355.4 23.0 226 626-856 25-263 (613)
345 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-35 3.7E-40 303.3 19.2 146 630-843 4-151 (177)
346 PRK13409 putative ATPase RIL; 100.0 1E-35 2.2E-40 355.5 19.4 194 630-840 77-287 (590)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.2E-35 1.6E-39 291.8 21.0 154 629-841 2-157 (157)
348 TIGR00954 3a01203 Peroxysomal 100.0 4.2E-35 9.1E-40 355.2 22.9 194 625-839 450-653 (659)
349 COG4618 ArpD ABC-type protease 100.0 1.4E-34 3E-39 325.4 22.7 225 624-857 332-564 (580)
350 COG0396 sufC Cysteine desulfur 100.0 1E-33 2.2E-38 293.2 24.6 223 625-854 2-234 (251)
351 cd03238 ABC_UvrA The excision 100.0 6.7E-34 1.5E-38 291.3 19.9 157 644-842 7-166 (176)
352 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-33 3.3E-38 367.4 24.9 208 626-854 636-851 (1522)
353 PLN03073 ABC transporter F fam 100.0 7.2E-34 1.6E-38 345.6 19.0 218 624-850 175-428 (718)
354 TIGR01271 CFTR_protein cystic 100.0 2.9E-33 6.2E-38 364.0 24.0 193 645-854 439-637 (1490)
355 PLN03232 ABC transporter C fam 100.0 3.2E-33 6.9E-38 363.9 23.8 206 626-854 614-829 (1495)
356 COG4107 PhnK ABC-type phosphon 100.0 2.4E-33 5.2E-38 278.1 16.7 224 625-859 5-247 (258)
357 COG4133 CcmA ABC-type transpor 100.0 2E-33 4.3E-38 283.1 16.1 190 626-826 2-192 (209)
358 PLN03130 ABC transporter C fam 100.0 4.8E-33 1E-37 363.0 24.3 205 626-854 614-829 (1622)
359 KOG0065 Pleiotropic drug resis 100.0 4.4E-32 9.6E-37 332.0 30.3 220 625-850 786-1018(1391)
360 COG0488 Uup ATPase components 100.0 1.2E-32 2.6E-37 322.8 22.6 204 625-849 2-236 (530)
361 cd03270 ABC_UvrA_I The excisio 100.0 8.9E-32 1.9E-36 286.0 20.5 193 644-846 7-226 (226)
362 COG5265 ATM1 ABC-type transpor 100.0 2.3E-32 4.9E-37 301.9 15.1 221 625-859 261-491 (497)
363 PTZ00243 ABC transporter; Prov 100.0 1.2E-31 2.7E-36 349.3 23.0 190 645-853 673-870 (1560)
364 COG4778 PhnL ABC-type phosphon 100.0 3.5E-32 7.5E-37 269.2 13.3 214 625-839 3-227 (235)
365 KOG0054 Multidrug resistance-a 100.0 1.7E-31 3.8E-36 334.0 20.6 222 624-858 1136-1367(1381)
366 COG4136 ABC-type uncharacteriz 100.0 2.8E-31 6.1E-36 258.1 14.0 199 626-837 2-207 (213)
367 COG1129 MglA ABC-type sugar tr 100.0 7.8E-30 1.7E-34 293.1 22.6 209 625-845 262-482 (500)
368 COG0488 Uup ATPase components 100.0 1.1E-29 2.3E-34 298.0 23.2 207 623-854 318-526 (530)
369 PF00005 ABC_tran: ABC transpo 100.0 1.5E-30 3.2E-35 253.5 13.2 132 648-794 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1E-29 2.2E-34 275.2 19.2 196 645-848 8-261 (261)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 4.1E-30 8.9E-35 268.0 14.1 164 649-839 14-190 (197)
372 cd03272 ABC_SMC3_euk Eukaryoti 100.0 8.2E-30 1.8E-34 272.6 14.0 185 645-838 15-234 (243)
373 cd03274 ABC_SMC4_euk Eukaryoti 100.0 6.6E-31 1.4E-35 276.9 4.8 185 626-839 5-204 (212)
374 KOG0054 Multidrug resistance-a 100.0 9.7E-29 2.1E-33 309.5 23.7 208 623-854 515-732 (1381)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.3E-28 7.2E-33 256.2 12.1 192 626-841 5-210 (213)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.5E-28 7.6E-33 262.1 11.2 180 658-838 25-242 (251)
377 COG3845 ABC-type uncharacteriz 99.9 1.3E-26 2.9E-31 261.8 22.1 221 624-850 255-489 (501)
378 PRK00349 uvrA excinuclease ABC 99.9 1.1E-25 2.5E-30 278.4 22.6 127 720-854 792-928 (943)
379 cd03240 ABC_Rad50 The catalyti 99.9 1.6E-26 3.5E-31 242.2 12.2 164 652-840 17-198 (204)
380 PRK00635 excinuclease ABC subu 99.9 2.3E-25 5E-30 285.8 23.8 213 626-853 600-906 (1809)
381 COG4138 BtuD ABC-type cobalami 99.9 1.4E-26 3E-31 230.4 7.5 198 647-852 14-220 (248)
382 COG4615 PvdE ABC-type sideroph 99.9 4.5E-26 9.8E-31 249.7 10.3 203 625-845 321-529 (546)
383 KOG0927 Predicted transporter 99.9 2E-25 4.3E-30 253.2 11.8 208 624-854 387-597 (614)
384 KOG0927 Predicted transporter 99.9 8.1E-25 1.8E-29 248.3 15.9 220 623-850 72-306 (614)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.9 9.9E-25 2.2E-29 227.7 14.4 171 647-841 11-192 (198)
386 TIGR00630 uvra excinuclease AB 99.9 8.3E-24 1.8E-28 261.5 23.4 125 719-851 789-923 (924)
387 COG4170 SapD ABC-type antimicr 99.9 7.8E-24 1.7E-28 215.9 12.8 233 626-860 3-255 (330)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 9.4E-24 2E-28 227.4 11.4 195 627-839 4-233 (247)
389 COG1245 Predicted ATPase, RNas 99.9 3.8E-23 8.3E-28 230.4 15.7 187 626-838 342-530 (591)
390 COG4178 ABC-type uncharacteriz 99.9 2.5E-22 5.4E-27 235.4 18.8 191 624-837 390-586 (604)
391 KOG2355 Predicted ABC-type tra 99.9 2.8E-22 6E-27 204.3 16.3 212 624-852 11-236 (291)
392 KOG0062 ATPase component of AB 99.9 3E-22 6.5E-27 226.5 16.7 203 624-848 360-564 (582)
393 KOG0065 Pleiotropic drug resis 99.9 2.7E-22 5.8E-27 246.8 13.8 211 644-856 127-354 (1391)
394 KOG0062 ATPase component of AB 99.9 2E-22 4.2E-27 228.0 11.0 202 625-851 79-283 (582)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.1E-21 2.3E-26 204.9 11.9 146 647-846 16-172 (200)
396 KOG0066 eIF2-interacting prote 99.8 6.6E-21 1.4E-25 210.4 13.8 193 624-842 584-779 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 9.7E-21 2.1E-25 200.0 11.3 84 758-841 119-211 (213)
398 cd03285 ABC_MSH2_euk MutS2 hom 99.8 4.8E-20 1E-24 195.9 11.0 151 645-847 17-175 (222)
399 COG1245 Predicted ATPase, RNas 99.8 4.9E-20 1.1E-24 205.8 11.1 173 655-839 97-288 (591)
400 cd03241 ABC_RecN RecN ATPase i 99.8 1.3E-19 2.9E-24 198.4 13.6 80 761-841 166-249 (276)
401 KOG0060 Long-chain acyl-CoA tr 99.8 7.3E-19 1.6E-23 201.4 19.1 201 624-839 431-641 (659)
402 cd03283 ABC_MutS-like MutS-lik 99.8 1.7E-19 3.7E-24 188.7 10.5 146 645-837 14-163 (199)
403 cd03239 ABC_SMC_head The struc 99.8 1.9E-18 4.2E-23 177.6 14.8 73 766-839 95-172 (178)
404 cd03243 ABC_MutS_homologs The 99.8 3.8E-19 8.1E-24 186.0 7.5 154 649-850 20-176 (202)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 2.2E-18 4.8E-23 174.3 12.4 139 648-839 11-155 (162)
406 COG2401 ABC-type ATPase fused 99.8 2E-18 4.4E-23 190.8 11.3 181 644-842 395-587 (593)
407 PRK00349 uvrA excinuclease ABC 99.8 6.4E-18 1.4E-22 210.0 15.8 131 718-853 435-585 (943)
408 cd03242 ABC_RecF RecF is a rec 99.7 2.7E-17 5.9E-22 179.7 17.5 190 647-842 11-269 (270)
409 TIGR00630 uvra excinuclease AB 99.7 1.3E-17 2.7E-22 207.0 16.1 132 718-853 433-583 (924)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.7 6E-18 1.3E-22 177.7 11.2 142 645-832 16-159 (204)
411 KOG0066 eIF2-interacting prote 99.7 4.6E-18 1E-22 188.1 8.1 221 626-855 264-501 (807)
412 PRK00635 excinuclease ABC subu 99.7 1.3E-16 2.8E-21 206.0 22.5 199 646-853 1504-1796(1809)
413 COG0178 UvrA Excinuclease ATPa 99.7 2.1E-16 4.5E-21 187.1 18.0 128 719-854 783-920 (935)
414 KOG0064 Peroxisomal long-chain 99.7 3.1E-17 6.7E-22 185.8 8.8 180 625-828 480-673 (728)
415 TIGR02858 spore_III_AA stage I 99.7 3.9E-16 8.5E-21 170.3 11.4 141 659-851 112-267 (270)
416 KOG0063 RNAse L inhibitor, ABC 99.6 1.5E-15 3.2E-20 168.9 13.0 176 645-838 349-531 (592)
417 cd03284 ABC_MutS1 MutS1 homolo 99.6 8E-16 1.7E-20 163.0 8.8 156 645-852 18-180 (216)
418 smart00534 MUTSac ATPase domai 99.6 8.2E-16 1.8E-20 158.9 3.2 85 758-844 54-141 (185)
419 PRK00064 recF recombination pr 99.6 1.2E-13 2.7E-18 157.0 20.2 78 763-842 271-359 (361)
420 PRK07721 fliI flagellum-specif 99.5 7.9E-13 1.7E-17 153.1 18.0 177 645-851 146-341 (438)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.5 3.6E-13 7.7E-18 142.6 13.1 136 647-831 18-161 (213)
422 TIGR01069 mutS2 MutS2 family p 99.5 1E-13 2.3E-18 170.6 9.8 132 650-828 313-449 (771)
423 PTZ00132 GTP-binding nuclear p 99.4 1.7E-13 3.8E-18 144.1 7.6 148 660-812 11-204 (215)
424 PF02463 SMC_N: RecF/RecN/SMC 99.4 2.9E-13 6.4E-18 142.9 7.7 177 649-837 16-211 (220)
425 KOG0063 RNAse L inhibitor, ABC 99.4 7.8E-13 1.7E-17 147.5 9.2 180 656-839 98-288 (592)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.6E-11 3.4E-16 130.9 14.0 139 645-830 18-160 (222)
427 PRK00409 recombination and DNA 99.3 2.8E-12 6E-17 158.5 9.5 150 647-844 317-469 (782)
428 cd00820 PEPCK_HprK Phosphoenol 99.3 2.9E-12 6.2E-17 121.1 6.6 75 645-728 2-77 (107)
429 TIGR00618 sbcc exonuclease Sbc 99.3 6E-12 1.3E-16 161.0 10.9 83 758-840 943-1036(1042)
430 PRK06793 fliI flagellum-specif 99.3 1.1E-11 2.4E-16 142.8 11.9 169 625-847 129-305 (432)
431 TIGR00634 recN DNA repair prot 99.3 9.4E-12 2E-16 149.5 10.6 79 762-841 437-519 (563)
432 PRK08533 flagellar accessory p 99.3 1.3E-11 2.9E-16 132.1 9.0 148 626-826 7-164 (230)
433 PHA02562 46 endonuclease subun 99.2 1.1E-11 2.4E-16 148.6 9.1 94 742-842 450-555 (562)
434 PRK13695 putative NTPase; Prov 99.2 8.3E-12 1.8E-16 127.5 5.5 152 660-845 2-156 (174)
435 PRK14079 recF recombination pr 99.2 2.7E-10 5.9E-15 129.3 18.0 75 764-844 262-345 (349)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.2 3.5E-11 7.7E-16 127.8 9.2 141 645-831 17-160 (218)
437 PRK10869 recombination and rep 99.2 5.4E-11 1.2E-15 142.3 10.8 78 763-841 428-509 (553)
438 cd01128 rho_factor Transcripti 99.2 1.2E-11 2.5E-16 134.0 3.7 176 647-842 6-211 (249)
439 PF13304 AAA_21: AAA domain; P 99.2 8.9E-11 1.9E-15 121.8 9.6 66 762-827 233-302 (303)
440 cd01124 KaiC KaiC is a circadi 99.2 2E-10 4.3E-15 117.6 11.5 81 758-838 64-163 (187)
441 COG0178 UvrA Excinuclease ATPa 99.1 7.1E-10 1.5E-14 132.5 15.2 152 682-854 409-578 (935)
442 PRK06995 flhF flagellar biosyn 99.1 2.3E-10 5E-15 133.7 10.1 149 647-822 245-400 (484)
443 PRK10246 exonuclease subunit S 99.1 2.2E-10 4.7E-15 146.5 10.5 81 759-839 943-1032(1047)
444 PRK03918 chromosome segregatio 99.1 3E-10 6.4E-15 143.3 10.4 79 760-839 783-868 (880)
445 TIGR00606 rad50 rad50. This fa 99.0 4.8E-10 1E-14 146.6 11.1 73 760-832 1194-1278(1311)
446 PRK01156 chromosome segregatio 99.0 1.3E-09 2.9E-14 137.8 13.5 96 742-838 764-883 (895)
447 PF12698 ABC2_membrane_3: ABC- 99.0 5.7E-11 1.2E-15 130.1 0.9 166 367-558 178-344 (344)
448 TIGR02168 SMC_prok_B chromosom 99.0 4.7E-10 1E-14 144.6 8.8 80 758-838 1082-1165(1179)
449 PRK13830 conjugal transfer pro 99.0 8E-09 1.7E-13 129.2 18.4 70 780-849 649-729 (818)
450 TIGR02788 VirB11 P-type DNA tr 99.0 5.9E-10 1.3E-14 124.5 7.2 144 650-852 136-280 (308)
451 cd01120 RecA-like_NTPases RecA 98.9 4.5E-09 9.7E-14 103.7 10.5 131 660-829 1-142 (165)
452 TIGR01026 fliI_yscN ATPase Fli 98.9 2.1E-08 4.7E-13 116.6 14.5 179 645-853 151-348 (440)
453 TIGR02169 SMC_prok_A chromosom 98.8 5.2E-09 1.1E-13 135.3 9.0 81 758-839 1067-1151(1164)
454 TIGR03238 dnd_assoc_3 dnd syst 98.8 1.3E-09 2.7E-14 126.0 2.8 52 645-698 19-71 (504)
455 PRK06067 flagellar accessory p 98.8 3E-08 6.5E-13 106.1 11.8 155 654-842 21-183 (234)
456 TIGR03881 KaiC_arch_4 KaiC dom 98.7 2.8E-09 6E-14 113.5 1.9 166 647-838 8-188 (229)
457 TIGR02655 circ_KaiC circadian 98.7 5.6E-10 1.2E-14 132.0 -4.8 160 654-838 17-190 (484)
458 PRK07196 fliI flagellum-specif 98.7 1.3E-08 2.8E-13 117.7 5.8 89 645-734 143-241 (434)
459 PRK02224 chromosome segregatio 98.7 2.8E-08 6E-13 125.7 9.1 78 762-840 778-869 (880)
460 cd01130 VirB11-like_ATPase Typ 98.7 7.3E-08 1.6E-12 99.9 9.9 122 647-827 14-138 (186)
461 cd02023 UMPK Uridine monophosp 98.7 1.9E-08 4E-13 104.8 5.2 114 660-799 1-114 (198)
462 TIGR00611 recf recF protein. A 98.6 5.2E-08 1.1E-12 111.4 7.6 63 764-828 274-345 (365)
463 cd01131 PilT Pilus retraction 98.6 1.1E-07 2.4E-12 99.6 8.9 119 660-838 3-122 (198)
464 smart00382 AAA ATPases associa 98.6 9.9E-07 2.1E-11 83.3 14.2 117 657-823 1-125 (148)
465 PRK06002 fliI flagellum-specif 98.6 1.4E-07 3E-12 109.5 9.2 86 624-715 137-230 (450)
466 COG3910 Predicted ATPase [Gene 98.5 7.6E-07 1.6E-11 91.3 12.2 83 758-841 122-205 (233)
467 cd01125 repA Hexameric Replica 98.5 2.7E-07 5.9E-12 99.2 9.1 46 780-826 108-161 (239)
468 PRK05399 DNA mismatch repair p 98.5 3.2E-07 7E-12 115.2 9.4 148 645-845 595-750 (854)
469 PRK13891 conjugal transfer pro 98.4 3.9E-06 8.5E-11 105.8 17.7 54 776-829 680-735 (852)
470 TIGR02903 spore_lon_C ATP-depe 98.4 2.4E-06 5.2E-11 104.0 12.6 111 656-810 173-291 (615)
471 TIGR00416 sms DNA repair prote 98.3 4.2E-07 9E-12 106.8 5.5 161 647-857 82-263 (454)
472 TIGR02680 conserved hypothetic 98.3 7.2E-07 1.6E-11 117.0 7.9 65 758-824 1240-1316(1353)
473 PLN03210 Resistant to P. syrin 98.3 2.3E-06 4.9E-11 111.5 11.5 142 652-837 201-348 (1153)
474 PRK06315 type III secretion sy 98.3 1.3E-06 2.8E-11 101.6 8.2 167 645-850 152-347 (442)
475 cd01876 YihA_EngB The YihA (En 98.3 3.7E-07 7.9E-12 90.0 2.8 140 661-810 2-168 (170)
476 PRK09825 idnK D-gluconate kina 98.3 5.6E-07 1.2E-11 92.7 4.3 67 657-727 2-68 (176)
477 PRK00300 gmk guanylate kinase; 98.3 1.3E-06 2.9E-11 91.2 7.0 28 656-683 3-30 (205)
478 PRK13898 type IV secretion sys 98.3 1.9E-05 4.1E-10 99.2 18.4 51 779-829 638-690 (800)
479 TIGR00554 panK_bact pantothena 98.3 8E-07 1.7E-11 98.5 5.1 74 659-733 63-138 (290)
480 PRK09270 nucleoside triphospha 98.2 1.3E-06 2.8E-11 93.5 5.9 73 657-733 32-108 (229)
481 COG0419 SbcC ATPase involved i 98.2 4.3E-06 9.2E-11 106.4 10.2 79 761-840 811-898 (908)
482 PRK00454 engB GTP-binding prot 98.2 7.6E-07 1.7E-11 91.6 2.8 65 742-811 125-192 (196)
483 TIGR01420 pilT_fam pilus retra 98.2 1.2E-05 2.5E-10 91.6 12.3 123 655-837 119-242 (343)
484 TIGR00152 dephospho-CoA kinase 98.1 3.1E-06 6.7E-11 87.7 6.0 70 769-840 61-133 (188)
485 PRK14722 flhF flagellar biosyn 98.1 9E-06 2E-10 93.0 8.9 73 645-736 124-196 (374)
486 TIGR03880 KaiC_arch_3 KaiC dom 98.1 7.1E-06 1.5E-10 87.2 7.5 57 782-838 106-177 (224)
487 PRK14723 flhF flagellar biosyn 98.0 1.6E-05 3.4E-10 97.7 10.6 71 647-736 174-244 (767)
488 PRK08149 ATP synthase SpaL; Va 98.0 7.3E-06 1.6E-10 95.1 6.9 68 645-713 139-214 (428)
489 cd01854 YjeQ_engC YjeQ/EngC. 98.0 4E-06 8.6E-11 93.0 4.5 85 648-733 152-244 (287)
490 cd01121 Sms Sms (bacterial rad 98.0 8.9E-06 1.9E-10 93.3 6.7 154 654-857 78-251 (372)
491 PRK10416 signal recognition pa 98.0 5.9E-06 1.3E-10 92.9 5.0 72 656-727 112-190 (318)
492 PRK10078 ribose 1,5-bisphospho 98.0 9.1E-06 2E-10 84.2 6.0 53 658-713 2-55 (186)
493 PRK01889 GTPase RsgA; Reviewed 98.0 1.2E-05 2.6E-10 91.9 7.5 80 647-729 184-263 (356)
494 TIGR00235 udk uridine kinase. 98.0 2.7E-06 5.9E-11 89.5 1.9 29 656-684 4-32 (207)
495 PF13558 SbcCD_C: Putative exo 97.9 1.4E-05 3E-10 73.6 5.8 52 759-810 26-90 (90)
496 PRK14721 flhF flagellar biosyn 97.9 6.8E-06 1.5E-10 95.3 4.6 64 655-737 188-251 (420)
497 PRK07594 type III secretion sy 97.9 9.1E-06 2E-10 94.5 5.5 65 625-695 128-192 (433)
498 cd01136 ATPase_flagellum-secre 97.9 1.5E-05 3.2E-10 89.7 7.0 51 645-696 57-107 (326)
499 PRK09183 transposase/IS protei 97.9 2.6E-05 5.6E-10 85.4 8.2 54 628-682 73-126 (259)
500 cd00009 AAA The AAA+ (ATPases 97.9 4.3E-05 9.3E-10 73.0 8.6 54 771-825 72-131 (151)
No 1
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2e-98 Score=929.16 Aligned_cols=803 Identities=36% Similarity=0.554 Sum_probs=637.2
Q ss_pred ccccccccccCCCccccCCCCCCCCCCCccccCCccccccccCCCCCCCCCCCCCCCCCCCceEEEeccCCcchhhhhhh
Q 002236 80 VEEKCGIEYSTPQQAQFCPIPRPPQWPPMLQVPAPEYRAVRNDFLTYPDLPNESCRIDGSCPATILLTGNNQSFGQTLNK 159 (949)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (949)
+-+.|..|+....+...|+ .++.++|+...+.+.++.... +..-.|+.+..|++.+.++|.+++.+.
T Consensus 45 ~~~~~~~~~~p~~~~~~~~--~~~~~lp~~~~~~~~~~~l~~-------~~~~~~~~t~l~~vfl~~~~~~~~~~~---- 111 (885)
T KOG0059|consen 45 QVTLFIQQHIPDARLVECP--KLVYLLPLKYRREFLFRGLDL-------IASFGVSLTTLEEVFLKLGGESDSLEN---- 111 (885)
T ss_pred HHHHHHHhhCccceecccc--cccccCChhccccchhhhhhc-------ccccccccccHHHHHhhcccccccccc----
Confidence 4477899999999999999 999999999999987777632 566788888999999999999988876
Q ss_pred ccCCCCCCCCchhHHHhhhhhccCCCCCCccccccCCCCCCCCCeEEecCCCCCCCc-eeEeeecccc--ccccceeeec
Q 002236 160 DMFKDTFSENPSDVMASLADNVLGSDSKTEITNYVEPAFVSDSPIYTIQSQCRPDSS-FVVPVKVASI--NISLVIRCLQ 236 (949)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~~~~~~~~--~~~~~~~~~~ 236 (949)
++..+.+ +....+..++.+++.....+++..+++|.+... ..+.+..... ..+.++.|.+
T Consensus 112 ---------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (885)
T KOG0059|consen 112 ---------------DSTEDQV--SGPAKAYTQFQALLRKRFLPLRRNWRLFLAQLLLPSIFVVLALVFSDPHLTLSPSL 174 (885)
T ss_pred ---------------ccccccc--chhHHhhhhHHHHHHHhhhhhhhhhhhHHHHHhhHHHHHHHHHhccCccccCCccc
Confidence 1111222 445667788899999888889998988887322 2111111111 1145688999
Q ss_pred cccccccCchhhhHHhhcccccCCchhhhhcceeEEEeccC------------------------CCCcceEEEEEcccc
Q 002236 237 GLNLWRKSSSEINDELYRGFRKGNSKRESNEILAAYDFLNS------------------------DLEKFNVNIWYNSTY 292 (949)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a~~~~~~------------------------~~~~~~~~i~yN~t~ 292 (949)
....|.+.+...+++.......++. ..+....+++..+. .....++.+|+|+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~n~k- 251 (885)
T KOG0059|consen 175 YGALYTNYSGEINTEEFLSVLEANG--KGRNLSLALNNINTEVDNFTVDNWTESSSKNKGDMLGRDLKDVRVSVLFNNK- 251 (885)
T ss_pred cceeeecCCccCCccHHHHhhhccc--ccchhhhhhhcchhhheeeeecceeccccccchhhhcCccccceEEEeeehh-
Confidence 9999999999999887766554431 01111111111111 22344566666663
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHHHhhcCCCcceeeeeeccCCCcchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 002236 293 KNDTGNVPIGLLRVPRSINLASNAYLRSLLGPGTQILFDFVKEMPKTDSKLKLDV-SSIIGTLFFTWVVLQLFPVILTAL 371 (949)
Q Consensus 293 ~~~~~~~~~~~~~~p~~ln~~~na~l~~~~g~~~~i~~~~~~~~P~~~~~~~~~~-~~~~~~lf~~~~~~~lfp~~~~~i 371 (949)
.+|..|.++|..+|++++...+.+ + ...++|+|+.......+. ..++++.|+.+++.+.+|.++..+
T Consensus 252 ---------~~~~~~~~~~~~~n~l~~~~~~~~--i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (885)
T KOG0059|consen 252 ---------GLHTLPFLLGLGSNALRRALNLSG--I-SVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSL 319 (885)
T ss_pred ---------hhhhHHHhcchHHHHHHHhhcccc--c-eeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHH
Confidence 356788899999999999876655 3 346789999887777676 678899999999999999999999
Q ss_pred HHHHHHHHHHHchhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHh
Q 002236 372 VYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVA 451 (949)
Q Consensus 372 V~EKe~klK~~m~~~Gl~~~~YWl~~~~~~l~~~~i~~i~~~i~~~~~~~~~f~~~~~~~~fv~~~lyg~s~I~~~yllS 451 (949)
|.||+.|+||+|+|+|+++.+||+++|+|+++++++.++++.+++.+++ ++..++..++++++++|++++++++|++|
T Consensus 320 i~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s 397 (885)
T KOG0059|consen 320 ILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILS 397 (885)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888887776 77788899999999999999999999999
Q ss_pred HhcCchhHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCchhhhhheeccchhHHHHHHHHHHhhhhccccCCCCCCccccC
Q 002236 452 ALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADL 531 (949)
Q Consensus 452 ~fFs~~~tA~~~~~i~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~l~P~~~l~~gl~~l~~~~~~~~~~~~~g~~w~~~ 531 (949)
++|+++.+|++..+++.+++++.+.+....+......+..+.+...+.|.|.+.++.+.+.............++.|.++
T Consensus 398 ~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 477 (885)
T KOG0059|consen 398 FIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVL 477 (885)
T ss_pred HHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999988888877765555544444444555556666678899999999988887766554444556778765
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchh---hcccccCCCCCCCCCCCCcccccccCCCchh
Q 002236 532 SDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQN---FKKKSRSSFRKPSLGRQDSKVFVSMEKPDVT 608 (949)
Q Consensus 532 ~~~~~g~~~~l~~m~i~~~l~lll~~yid~v~~~~~g~~p~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~ 608 (949)
... ..+..+.+.|.+.++...|+..+..+. +.|+|++.. +.++.+. . ...........++|+.||.
T Consensus 478 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~e~~~v~ 546 (885)
T KOG0059|consen 478 GND-----ESFYTLLLEWLLPLIGRRYLALVTEGV--KDDLFFLLIFVPFKRRMRA-L---TQNMLKGFEPVEVEKLDVA 546 (885)
T ss_pred ccc-----ccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhcccccc-c---cccccCCCcCcchhhHHHH
Confidence 432 011111122222222222222211100 223333211 1111000 0 0000111123456888999
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 002236 609 QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 688 (949)
Q Consensus 609 ~E~~~v~~~~~~~~~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~ 688 (949)
+||+++++........+++.++||+|.|++++ + |++++|+.|++|||+|++|+|||||||++|||+|+.+||+|+
T Consensus 547 ~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~----~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~ 621 (885)
T KOG0059|consen 547 RERNRVETLLFRSSYSSALVLNNLSKVYGGKD----G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE 621 (885)
T ss_pred HHHHhhhhhhhcccccceEEEcceeeeecchh----h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcce
Confidence 99988888766655567899999999998632 2 999999999999999999999999999999999999999999
Q ss_pred EEEcCeecCc--cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCC
Q 002236 689 AYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 766 (949)
Q Consensus 689 I~i~G~di~~--~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~L 766 (949)
++++|+++.. +.++++++||||||+|.+|+.||+||||.+|++++|++++++++.++++++.++|. ++++++++.|
T Consensus 622 a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~--~~~~~~~~~y 699 (885)
T KOG0059|consen 622 ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG--PYANKQVRTY 699 (885)
T ss_pred EEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh--hhhccchhhC
Confidence 9999999986 44569999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred ChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 767 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 767 SGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
||||||||++|+|++++|++++|||||+||||.+||.+|++|++.++ |++||+|||+|||||++|||++||.+|+++|.
T Consensus 700 SgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 700 SGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred CCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 99999999999999999999999999999999999999999999754 66999999999999999999999999999999
Q ss_pred cCHHHHHHhcCCcEEEEEEeCCCcH-HHHHHHHHhcCCCceeEEEeccEEEEEecCCcc-cHHHHHHHHHHHhcCCcEeE
Q 002236 846 GNPKELKARYGGSYVFTMTTSADHE-EEVESMAKRLSPGANKIYQISGTQKFELPKQEV-RVSDVFQAVEEAKSRFTVFA 923 (949)
Q Consensus 846 Gs~~~Lk~~~g~~y~l~i~~~~~~~-~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~-~~~~lf~~le~~~~~~~I~~ 923 (949)
|+++|||+|||.+|.++++.....+ +.+...+++.+|++...+++.+.++|++|+++. .++++|..+|.++..+++++
T Consensus 780 Gs~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~i~d 859 (885)
T KOG0059|consen 780 GSPQELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFPGAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFGIED 859 (885)
T ss_pred cChHHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCCCcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999877555 478889999999999999999999999997766 57799999999999999999
Q ss_pred EEeccCCHHHHHHHhhhccccccC
Q 002236 924 WGLADTTLEDVFIKVARHAQAFED 947 (949)
Q Consensus 924 ~~vs~tTLEdVFl~~~~~~~~~~~ 947 (949)
|+++|+||||||++++++++..+.
T Consensus 860 yslsq~tLe~VFi~~a~~q~~~~~ 883 (885)
T KOG0059|consen 860 YSLSQTTLEDVFLILAKTQEDDNS 883 (885)
T ss_pred HHHHHhhHHHHHHHHhcccccccc
Confidence 999999999999999999987654
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-93 Score=919.97 Aligned_cols=659 Identities=26% Similarity=0.413 Sum_probs=513.3
Q ss_pred hcceeEEEeccCC------CCcceEEEEEccccC-CC-----CCCC---------cccc--CcHHHHHHHHHHHHHHhhc
Q 002236 266 NEILAAYDFLNSD------LEKFNVNIWYNSTYK-ND-----TGNV---------PIGL--LRVPRSINLASNAYLRSLL 322 (949)
Q Consensus 266 n~~~~a~~~~~~~------~~~~~~~i~yN~t~~-~~-----~~~~---------~~~~--~~~p~~ln~~~na~l~~~~ 322 (949)
+.+.+|..|.+.. ..+++|+|++|.+.. .+ ..|. .+.| .++-.+++++++++++...
T Consensus 545 ~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~ 624 (2272)
T TIGR01257 545 NRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQM 624 (2272)
T ss_pred CCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHHHHHHHhhc
Confidence 3467888885431 356899999998842 10 0011 1112 2566789999999999876
Q ss_pred CCCcceeeeeeccCCCcchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcCCCchHHHHHHHHH
Q 002236 323 GPGTQILFDFVKEMPKTDSKLKLD--VSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAY 400 (949)
Q Consensus 323 g~~~~i~~~~~~~~P~~~~~~~~~--~~~~~~~lf~~~~~~~lfp~~~~~iV~EKe~klK~~m~~~Gl~~~~YWl~~~~~ 400 (949)
+.. .....+.++||+|++..+.- ....+.++|+++.+++....++..+|.|||.|+||.|+||||++++||++||+.
T Consensus 625 ~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~ 703 (2272)
T TIGR01257 625 QAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLD 703 (2272)
T ss_pred CCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 532 23345789999998754321 123345556555554444447789999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHHHHHH
Q 002236 401 FFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQ 480 (949)
Q Consensus 401 ~l~~~~i~~i~~~i~~~~~~~~~f~~~~~~~~fv~~~lyg~s~I~~~yllS~fFs~~~tA~~~~~i~~~~~~ll~~~l~~ 480 (949)
.+++.++.+++++++ +....+|..+++.++|+++++|+.+.|+++|++|+||+++++|.+++.+++|++.++..+ .
T Consensus 704 ~~~~~~i~~~l~~~i--l~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~--~ 779 (2272)
T TIGR01257 704 SFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHIL--C 779 (2272)
T ss_pred HHHHHHHHHHHHHHH--HhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--H
Confidence 665444433322222 223467899999999999999999999999999999999999999998888876553221 1
Q ss_pred HhhcCCCCchhhhhheeccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCC-----ccchHHHHHHHHHHHHHHHHH
Q 002236 481 SFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDS-----ENGMKEVLIIMFVEWLLLLGI 555 (949)
Q Consensus 481 ~~~~~~~~~~~~~~~~~l~P~~~l~~gl~~l~~~~~~~~~~~~~g~~w~~~~~~-----~~g~~~~l~~m~i~~~l~lll 555 (949)
+...+ ..+......++++|+.+++.|+..+..++..+. |++|+++..+ ...++..++||++++++|++|
T Consensus 780 ~~~~~-~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~-----G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL 853 (2272)
T TIGR01257 780 FAWQD-RMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGL-----GLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLL 853 (2272)
T ss_pred hhccc-ccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCC-----CcccccccccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11222 122223345579999999999999988876654 8899988632 235788899999999999999
Q ss_pred HHHHHhhccCCCC-CCccccchh--hc-ccccCCCCCCCCCCCCcccccccCCCchhH-HH-HHHHhhhcCCCCCCcEEE
Q 002236 556 AYYVDKILSSGGA-KGPLYFLQN--FK-KKSRSSFRKPSLGRQDSKVFVSMEKPDVTQ-ER-ERVEQLLLEPGTSHAIIS 629 (949)
Q Consensus 556 ~~yid~v~~~~~g-~~p~~f~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ed~dv~~-E~-~~v~~~~~~~~~~~~I~v 629 (949)
+||+|+|+|+++| ++||||+.. ++ ++.....+.............+.++++..+ .+ +.++. ........|++
T Consensus 854 ~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~--~~~~~~~~L~I 931 (2272)
T TIGR01257 854 AWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFER--ELPGLVPGVCV 931 (2272)
T ss_pred HHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccccccccccccccccccccccccccccccc--ccCCCCceEEE
Confidence 9999999999999 889988631 11 110000000000000000000111111000 00 00111 01123457999
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEE
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~ 709 (949)
+||+|.|++. ++.||+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++..+..++|+.+||
T Consensus 932 ~nLsK~y~~~----~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 932 KNLVKIFEPS----GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EeEEEEecCC----CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 9999999631 367999999999999999999999999999999999999999999999999998777778899999
Q ss_pred EcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 002236 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 789 (949)
Q Consensus 710 ~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllL 789 (949)
|||++.+++.+||+||+.++++++|.+.++.+++++++++.+||. +++++++++|||||||||+||+||+++|+|+||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH--HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999877677778899999999997 478999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCC-
Q 002236 790 DEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD- 868 (949)
Q Consensus 790 DEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i~~~~~- 868 (949)
||||+||||.+|+.+|++|++.++|+|||+|||+|+|++.+||||++|++|+++|.|++++||++||.||.+++..+..
T Consensus 1086 DEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~ 1165 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKN 1165 (2272)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEecccc
Confidence 9999999999999999999998789999999999999999999999999999999999999999999999999865320
Q ss_pred --------------------------------------cHHHHHHHHHhcCCCceeEEEeccEEEEEecCCcc---cHHH
Q 002236 869 --------------------------------------HEEEVESMAKRLSPGANKIYQISGTQKFELPKQEV---RVSD 907 (949)
Q Consensus 869 --------------------------------------~~~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~---~~~~ 907 (949)
..+++.++++++.|+++.....+++..|.+|.+.. .++.
T Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~ 1245 (2272)
T TIGR01257 1166 IQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYAS 1245 (2272)
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHH
Confidence 23567889999999999999999999999998764 5999
Q ss_pred HHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhhccc
Q 002236 908 VFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQ 943 (949)
Q Consensus 908 lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~~~~ 943 (949)
+|++||+.+++++|.+|++++|||||||++++++.+
T Consensus 1246 lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257 1246 LFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred HHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhcc
Confidence 999999999999999999999999999999997654
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.9e-91 Score=895.26 Aligned_cols=617 Identities=29% Similarity=0.482 Sum_probs=486.1
Q ss_pred cceEEEEEccccCCCCCCCccccCcHHHHHHHHHHHHHHhhcCCC-----cceeeeeeccCCCcchhhh-hh----hHHH
Q 002236 281 KFNVNIWYNSTYKNDTGNVPIGLLRVPRSINLASNAYLRSLLGPG-----TQILFDFVKEMPKTDSKLK-LD----VSSI 350 (949)
Q Consensus 281 ~~~~~i~yN~t~~~~~~~~~~~~~~~p~~ln~~~na~l~~~~g~~-----~~i~~~~~~~~P~~~~~~~-~~----~~~~ 350 (949)
+.++++|||++ + +|++|.++|+++||+++...+++ ..+. ++++|+|+...... .. ....
T Consensus 1612 ~~~~~vwfNn~-----~-----~Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~-v~N~Plp~t~~~~~~~~~~~~~~~~ 1680 (2272)
T TIGR01257 1612 EDNIKVWFNNK-----G-----WHALVSFLNVAHNAILRASLPKDRDPEEYGIT-VISQPLNLTKEQLSEITVLTTSVDA 1680 (2272)
T ss_pred CcceEEEEcCC-----c-----ccHHHHHHHHHHHHHHHHhcccccCCccceEE-EEecCCCCchhhhhhhhhcccchhH
Confidence 34689999994 3 46688999999999999875432 3343 46889887542211 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeec-cch
Q 002236 351 IGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL-NSY 429 (949)
Q Consensus 351 ~~~lf~~~~~~~lfp~~~~~iV~EKe~klK~~m~~~Gl~~~~YWl~~~~~~l~~~~i~~i~~~i~~~~~~~~~f~~-~~~ 429 (949)
+-.+++++.+.++.+.++.++|+||++|+||+|.++|++..+||+++|+||++++++.++++++.-.+++...|.. .++
T Consensus 1681 ~iai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l 1760 (2272)
T TIGR01257 1681 VVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENL 1760 (2272)
T ss_pred HHHHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchH
Confidence 2223333344444556888999999999999999999999999999999999988887666555444555554544 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCchhHHHHHHHHHHHHhHHHHH---HHHHHhhcCCCC---chhhhhheeccchhH
Q 002236 430 GIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGA---FLLQSFVEDPSF---PRRWITAMELYPGFA 503 (949)
Q Consensus 430 ~~~fv~~~lyg~s~I~~~yllS~fFs~~~tA~~~~~i~~~~~~ll~~---~l~~~~~~~~~~---~~~~~~~~~l~P~~~ 503 (949)
+.+++++++||++.||++|++|++|+++.+|++...++.++.|++.. +++..+..+... ......++.++|.|+
T Consensus 1761 ~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~ 1840 (2272)
T TIGR01257 1761 PALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFC 1840 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhh
Confidence 77888999999999999999999999999999877666665555332 223322111111 111222345889999
Q ss_pred HHHHHHHHHhhhhc-------cccCCCCCCccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccch
Q 002236 504 LYRGLYEFGTYSFR-------GHSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQ 576 (949)
Q Consensus 504 l~~gl~~l~~~~~~-------~~~~~~~g~~w~~~~~~~~g~~~~l~~m~i~~~l~lll~~yid~v~~~~~g~~p~~f~~ 576 (949)
+++|+++++..... +.....+.+.|+. ++..+++|++++++|+++++++|+-.. ..
T Consensus 1841 lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~ll~m~~~~iv~flLl~~ie~~~~----------~~ 1903 (2272)
T TIGR01257 1841 LGRGLIDLALSQAVTDVYAQFGEEHSANPFQWDL-------IGKNLVAMAVEGVVYFLLTLLIQHHFF----------LS 1903 (2272)
T ss_pred hHHHHHHHHHhHHHHHHHHhhcccccCCccchhh-------ccHHHHHHHHHHHHHHHHHHHHHhhhh----------hh
Confidence 99999998764321 1111112344543 345788999999999999999996321 00
Q ss_pred hhcccccCCCCCCCCCCCCcccccccCCCchhHHHHHHHhhhcCCCCCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEe
Q 002236 577 NFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALP 656 (949)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~~E~~~v~~~~~~~~~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~ 656 (949)
.+.+. + . . .....||+||.+||+||.... ..+.+|+++||+|.|+++ ++.||+|+||+|+
T Consensus 1904 ~~~~~-~------~---~---~~~~~eD~DV~~Er~rV~~~~---~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~ 1963 (2272)
T TIGR01257 1904 RWIAE-P------A---K---EPIFDEDDDVAEERQRIISGG---NKTDILRLNELTKVYSGT----SSPAVDRLCVGVR 1963 (2272)
T ss_pred hhccc-c------C---c---CcCCCchhHHHHHHHHHhccC---CCCceEEEEEEEEEECCC----CceEEEeeEEEEc
Confidence 00000 0 0 0 011247899999999997532 234579999999999741 3579999999999
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~ 736 (949)
+|||+||+||||||||||+|||+|+++|++|+|+++|+++..+..+++++||||||++.+++.+|++|||.++++++|.+
T Consensus 1964 ~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~ 2043 (2272)
T TIGR01257 1964 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043 (2272)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999997666667889999999999999999999999999999987
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCc
Q 002236 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGR 815 (949)
Q Consensus 737 ~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~ 815 (949)
.++.+++++++++.++|. +++|+++++|||||||||++|+||+++|+|+||||||+||||.+|+.+|++|++. ++|+
T Consensus 2044 ~~~~~~~v~~lLe~lgL~--~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~ 2121 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLS--LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR 2121 (2272)
T ss_pred HHHHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 777778899999999997 4899999999999999999999999999999999999999999999999999986 5699
Q ss_pred EEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCCcH------HHHHHHHHhcCCCceeEEE
Q 002236 816 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHE------EEVESMAKRLSPGANKIYQ 889 (949)
Q Consensus 816 tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i~~~~~~~------~~v~~~v~~~~p~a~~~~~ 889 (949)
|||+|||+|+|++++|||+++|++|+++|.|+++++|++||.+|.++++.+.... +.+..+++..+|++...+.
T Consensus 2122 TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~~e~ 2201 (2272)
T TIGR01257 2122 AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRER 2201 (2272)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHHhhcCccceeecc
Confidence 9999999999999999999999999999999999999999999999887653221 2345667777898877777
Q ss_pred eccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhhccccccCCC
Q 002236 890 ISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFEDLP 949 (949)
Q Consensus 890 ~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~~~~~~~~~~ 949 (949)
+.+...|++|.. .++++|+.+++++++++|.+|+++|+||||||++++++++..+.+|
T Consensus 2202 ~~~~l~~~i~~~--~~~~if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~~~~~~ 2259 (2272)
T TIGR01257 2202 HYNMLQFQVSSS--SLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYDLP 2259 (2272)
T ss_pred ccceEEEEeCcc--cHHHHHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHhccccccCCCC
Confidence 777888999854 6899999999988899999999999999999999999887766655
No 4
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-54 Score=476.96 Aligned_cols=287 Identities=38% Similarity=0.680 Sum_probs=241.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.+.++||+|.|++ ++.||+||||+|++||++||+||||||||||+|||+|+.+|++|+|.++|+++..+..++++
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5789999999973 26899999999999999999999999999999999999999999999999999877778999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||+||++.+++.||++|||.|++++++.+....+++++++++.++|.+ ..++++++||+||||||+||+||+++|+
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999876666789999999999974 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-cEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 863 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g-~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i 863 (949)
++||||||+||||.+|+.+|++|+++ ++| +||++|||.++|++.+||||++|++|++++.|++++++..++.......
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~~~ 236 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceEEE
Confidence 99999999999999999999999986 455 8999999999999999999999999999999999999988776554333
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhh
Q 002236 864 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVAR 940 (949)
Q Consensus 864 ~~~~~~~~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~ 940 (949)
......... ... .... ..+ .....++...+.+ ....+..+...+.+||++|++..+
T Consensus 237 ~~~~~~~~~---~~~----~~~~---~~~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 292 (293)
T COG1131 237 EPERLELAE---LLE----GLKL---VKG---------EEELAEILEALLE--EGVKIESIEVKEPSLEDVFLELTG 292 (293)
T ss_pred ecccccchh---hhh----cccc---ccc---------chhHHHHHHHHHH--cCCceeeeecCCCCHHHHHHHHcc
Confidence 322111111 000 0000 000 1123344444433 345666888999999999998765
No 5
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.7e-54 Score=476.10 Aligned_cols=299 Identities=34% Similarity=0.531 Sum_probs=242.1
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
+..+|+++||+|.|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.....+
T Consensus 4 ~~~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CCceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence 3457999999999973 5799999999999999999999999999999999999999999999999999776667
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.+++|||+||++.+++.+|++||+.+++++++.+..+..++++++++.++|. +..++++++||||||||++||+||++
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999888877667778899999999997 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEE
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 861 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l 861 (949)
+|+++||||||+||||.+|+.+|++|++++ +|+|||++||+++|++.+||||++|++|++++.|+++++++.......+
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~ 235 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVI 235 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEE
Confidence 999999999999999999999999999874 5899999999999999999999999999999999999998775444444
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhhc
Q 002236 862 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARH 941 (949)
Q Consensus 862 ~i~~~~~~~~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~~ 941 (949)
.+.... ...+..... +........+.. +.+... ...++...+.. ...+ .+...++||||+|++++++
T Consensus 236 ~~~~~~--~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~---~~~~-~~~~~~~sLed~f~~~~~~ 302 (306)
T PRK13537 236 EIYGPD--PVALRDELA---PLAERTEISGET--LFCYVR--DPEPLHARLKG---RAGL-RYLHRPANLEDVFLRLTGR 302 (306)
T ss_pred EEEcCC--hHHHHHHhh---hccceeeeeCCE--EEEEeC--CHHHHHHHHHh---ccCc-eEEecCCCHHHHHHHHhCc
Confidence 443321 111111111 222112212222 222211 13445555532 1123 3345789999999999865
Q ss_pred c
Q 002236 942 A 942 (949)
Q Consensus 942 ~ 942 (949)
.
T Consensus 303 ~ 303 (306)
T PRK13537 303 E 303 (306)
T ss_pred c
Confidence 4
No 6
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6e-55 Score=452.13 Aligned_cols=294 Identities=28% Similarity=0.511 Sum_probs=254.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
++++++++|+|+ ++.||+|+||+|++||++|+||+|||||||++|||.|++.||+|+|.++|.+++. ..+.
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 689999999998 4789999999999999999999999999999999999999999999999999865 4567
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||.|.+..|++.|||.|.|.|+++++|++.++++++++.+|+++++. ++..+++.+||.||+||+.+..|++++|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999997 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMT 864 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i~ 864 (949)
++|||||+|||||.+.+.+.+.+.+++ +|.|||++||.|+.+|+|||++.+|++|+.+..|+.+++++.||.... .+.
T Consensus 151 LlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-~ie 229 (300)
T COG4152 151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-VIE 229 (300)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-EEe
Confidence 999999999999999999999999975 699999999999999999999999999999999999999999998643 233
Q ss_pred eCCCcHHHHHHHHHhcCCCceeEEEe-ccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhhc
Q 002236 865 TSADHEEEVESMAKRLSPGANKIYQI-SGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARH 941 (949)
Q Consensus 865 ~~~~~~~~v~~~v~~~~p~a~~~~~~-~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~~ 941 (949)
.+.. .+++. ..|+....... .|..... |..+..-.++|+.+. ++..|..|.+..+||+|+|+.-+..
T Consensus 230 s~~s-~eeL~-----~ipgi~~~~~~~~G~~~i~-ie~e~~a~~ifq~~a---~~g~i~~Fe~~~PsL~diFi~~~g~ 297 (300)
T COG4152 230 SDLS-LEELA-----NIPGILKITETKDGSWRIQ-IENETVAREIFQEVA---RDGYIQRFELQEPSLHDIFIEKVGG 297 (300)
T ss_pred ccCc-hHHHh-----cCCCceeeeeccCCceEee-cccchHHHHHHHHHh---ccceeEEEeecCCCHHHHHHHHhcc
Confidence 2221 12222 24666555442 2333323 333334456777764 4567999999999999999987654
No 7
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-56 Score=449.14 Aligned_cols=224 Identities=33% Similarity=0.571 Sum_probs=215.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
|+++.+|+|+|+. ...|++||||++++||++||+|+|||||||+||||++++.||+|.|+++|.|+..++..+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5889999999984 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+||+.+....+|..||++|||.|++++.++.+.+++.+++++.+.++|. +++|+++++||.|||||++|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~--~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL--EYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH--HHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999997 59999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
+++|||||||||..+++.+.+.|++.+. |++||++||.|+|++++|||++++++|+++..|+++.+.++.+
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 9999999999999999999999999865 9999999999999999999999999999999999999988754
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-55 Score=454.46 Aligned_cols=226 Identities=31% Similarity=0.475 Sum_probs=215.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
||+++|++|+|++ +.||+|+||+|++||+++++||+||||||+||||.+|+.||+|+|+++|+++.. +..++|
T Consensus 1 MI~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 5889999999973 689999999999999999999999999999999999999999999999999976 678899
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
++|||+-|...|||++||.||+.+...++|+++++++++++++|+.+||.+.+++++++++|||||+||+.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998656999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCC
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 857 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~ 857 (949)
+|++||||+++|||.+|.++.+.++++. + |+|||++||||+||..++|||++|++|+++..++|+++.++...
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccH
Confidence 9999999999999999999999999863 3 99999999999999999999999999999999999999876443
No 9
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.9e-52 Score=462.15 Aligned_cols=298 Identities=29% Similarity=0.462 Sum_probs=245.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.....++++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEECC------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 4889999999963 5799999999999999999999999999999999999999999999999998766567788
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+++.+|++||+.+++++++.+.++..++++++++.+||. +..++++++||||||||+++|+||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR--PEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888776666677899999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEe
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTT 865 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i~~ 865 (949)
++||||||+||||.+++.+|+.|++.++++|||++||+++|++++|||+++|++|++++.|++++++++++ ...+.+..
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~ 232 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEF 232 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEe
Confidence 99999999999999999999999998778999999999999999999999999999999999999988754 33444443
Q ss_pred CCCcHHHHHHHHHhcCCCceeEEE-eccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHh
Q 002236 866 SADHEEEVESMAKRLSPGANKIYQ-ISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKV 938 (949)
Q Consensus 866 ~~~~~~~v~~~v~~~~p~a~~~~~-~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~ 938 (949)
....... .... ..+...... ..+...+..+.......++...+. ..+..+.++...+++|||+|+++
T Consensus 233 ~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 233 EEQIDLQ---LFET-LEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQ--QKGLKLISLQQNEKNLEQVFREI 300 (301)
T ss_pred cCcchhH---HHhh-ccccceeeecCCCeEEEEEcCccchHHHHHHHHH--HCCCceEEEEeCCCCHHHHHHHh
Confidence 3211111 1111 112111111 122223333332223456665553 25678999999999999999876
No 10
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-52 Score=464.23 Aligned_cols=290 Identities=38% Similarity=0.610 Sum_probs=237.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++......+++.+||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999999987655667888999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
|+.+++++++.+..+.+++++++++.++|. +..++++++|||||||||++|+||+++|+++||||||+||||.+++.+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999988888776666677899999999997 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCCcH-HHHHHHH-H---
Q 002236 805 WNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHE-EEVESMA-K--- 878 (949)
Q Consensus 805 ~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i~~~~~~~-~~v~~~v-~--- 878 (949)
|++|++. ++|+|||++||++++++.+|||+++|++|++++.|++++++++++..+ +.+....... ....... .
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELG 242 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCce-EEEEecCchhhhhhhhHHHhhhh
Confidence 9999986 468999999999999999999999999999999999999998876543 3333322111 1111111 0
Q ss_pred hcCCCceeEEEeccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhh
Q 002236 879 RLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVA 939 (949)
Q Consensus 879 ~~~p~a~~~~~~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~ 939 (949)
...++........+...+.++.......+++..+. ..+..+.++.+.++||||+|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 243 ETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAI--RNGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred hccccceeeeecCCeEEEEEcCchhHHHHHHHHHH--HCCCceEEEEcCCCCHHHHHHHHh
Confidence 11122222222233344555543334566777664 357889999999999999999975
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-53 Score=437.84 Aligned_cols=221 Identities=30% Similarity=0.477 Sum_probs=209.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--cHHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~~~~~ 703 (949)
+|+++||+|.||+ ..+|+|||++|++||+++|+||+|||||||||+|.||++|++|+|.++|.++.. +..++
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 6899999999984 689999999999999999999999999999999999999999999999988753 57789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~-~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
|+++|+|||+..|||.+||.||+.+.. ..++.+++++++++.++|+++||. +++|.++.+||||||||++|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~--~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch--hhhhhCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999999999864 468899999999999999999997 48999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|+++++|||||+|||+...++.++++++ ++|.|.|++||+|..|.+.+|||++|++|++++.|+|+++..+
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999996 6799999999999999999999999999999999999998764
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.2e-52 Score=467.24 Aligned_cols=297 Identities=36% Similarity=0.545 Sum_probs=240.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++||+|.|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.....+.+
T Consensus 40 ~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 40 VAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113 (340)
T ss_pred eeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence 46999999999973 579999999999999999999999999999999999999999999999999976556778
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.|||+||++.+++.+|++||+.+++.+++....+..++++++++.++|. +..++++++||||||||++||+||+++|
T Consensus 114 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~--~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred ccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999988887766556677788999999997 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEE
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 863 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i 863 (949)
+++||||||+||||.+|+.+|++|++. ++|+|||++||++++++.+||||++|++|++++.|+++++++++.....+.+
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~ 271 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEI 271 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEEE
Confidence 999999999999999999999999986 4599999999999999999999999999999999999999887655544444
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhhcc
Q 002236 864 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 942 (949)
Q Consensus 864 ~~~~~~~~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~~~ 942 (949)
.... .+....... +........+.. +.+-.. ...++...+.. ... .++.+...||||+|++++++.
T Consensus 272 ~~~~--~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~---~~~-~~~~~~~~sLEdvf~~~~~~~ 337 (340)
T PRK13536 272 YGGD--PHELSSLVK---PYARRIEVSGET--LFCYAP--DPEQVRVQLRG---RAG-LRLLQRPPNLEDVFLRLTGRE 337 (340)
T ss_pred EcCC--hHHHHHHhh---cccceEEecCCE--EEEEeC--CHHHHHHHHHh---ccC-ceEEEcCCCHHHHHHHHhccc
Confidence 3221 112222221 111111112222 222111 12344444421 112 256788999999999998754
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-53 Score=453.07 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=212.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc----cHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~----~~~ 701 (949)
+|++++++|.|++. +++...||+||||+|++|||+||+|++|||||||+|++.+|.+||+|+|.++|.++.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58999999999864 3345789999999999999999999999999999999999999999999999999864 456
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
+.|++||++|||..|+...||+||+.|..++.|.+++++++++.++|+.+||. +++++++.+|||||||||+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcchhhHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999998 4899999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
.+|+||+.|||||+|||...+.+.++|+++. -|-||+++||.||-+..+|||+++|++|++++.|+..++...
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 9999999999999999999999999999964 499999999999999999999999999999999999987654
No 14
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.5e-51 Score=449.04 Aligned_cols=297 Identities=34% Similarity=0.525 Sum_probs=238.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46999999999973 569999999999999999999999999999999999999999999999999865555667
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+||++.+++.+|++||+.++++.++.+..+.+++++++++.++|. +..++++++||||||||++||+||+++|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999877766655555667788999999997 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEE
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 863 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y~l~i 863 (949)
+++||||||+||||.+++.++++|++. ++|+|||++||++++++.+|||+++|++|++++.|+++++++.+...+...+
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 234 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEI 234 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEE
Confidence 999999999999999999999999986 4689999999999999999999999999999999999999877655555544
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEeccCCHHHHHHHhhhcc
Q 002236 864 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 942 (949)
Q Consensus 864 ~~~~~~~~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~vs~tTLEdVFl~~~~~~ 942 (949)
.... .+.+..... +........+.. +.+... ...++...+.. ....++....+||||+|++++++.
T Consensus 235 ~~~~--~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~----~~~~~~~~~~~sLedif~~~~~~~ 300 (303)
T TIGR01288 235 YGGD--PDELRELIR---PYARRIEVSGET--LFCYAR--DPEQVRVQLRG----RTDLRLLQRPPNLEDVFLRLTGRE 300 (303)
T ss_pred EcCC--HHHHHHHhh---hccceeeeeCCE--EEEEeC--CHHHHHHHHhc----ccCceEEecCCCHHHHHHHHhccc
Confidence 4322 122222221 111122112222 222111 22344444431 223356788999999999998654
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-50 Score=421.51 Aligned_cols=223 Identities=30% Similarity=0.541 Sum_probs=208.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc----c
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 699 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~----~ 699 (949)
...|++++|+|.||+ +.+++||||+|++||++|++||+|+|||||+|.|.|+++|++|+|+++|+++.. +
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 457999999999984 689999999999999999999999999999999999999999999999999864 3
Q ss_pred HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 700 ~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l-~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
..++|+++|+++|+.+||..|||+||+.|..+- ..++++.+++.+..-|+.+||.. ...++.+++|||||+||+++||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~-~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG-AAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCCh-hhhhhCchhhcchHHHHHHHHH
Confidence 447889999999999999999999999997654 46788889999999999999973 3489999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~--g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|++.||+++++||||+||||.+...+-++|+++++ |.|+|++|||++++..+|||++++.+|+++..|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999754 9999999999999999999999999999999999999976
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-49 Score=440.35 Aligned_cols=226 Identities=28% Similarity=0.452 Sum_probs=211.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..|+++||+|.||+ ..||+|+||+|++||+++|+||||||||||||||+||++||+|+|+|+|.+++.-. -.+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-P~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PEK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hhH
Confidence 36899999999984 22999999999999999999999999999999999999999999999999998632 235
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
|+||+|||+.+|||.|||+||+.|..++++.++++++++|+++++.++|. +++|+++.+|||||||||++||||+.+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~--~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE--HLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh--hHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999998 4899999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcE
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 859 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y 859 (949)
++++||||.|.||+..|..+...|+++. + |.|+|.+|||-.||..++|||++|++|++...|+|.++..+....+
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 9999999999999999999999999863 3 8999999999999999999999999999999999999987765543
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=440.84 Aligned_cols=221 Identities=33% Similarity=0.542 Sum_probs=206.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..++++||+|.|+ ++.||+|+||+|++||+++||||||||||||||||+|++.||+|+|.++|+++..- .-.+
T Consensus 4 ~~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~k 76 (352)
T COG3842 4 PALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEK 76 (352)
T ss_pred ceEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhh
Confidence 4799999999998 37899999999999999999999999999999999999999999999999999763 3446
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
|.||+|||+.+|||+|||+||+.|..++++ .++++++++++++|+.++|. +++++++.+||||||||+++||||+.+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~--~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE--GFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch--hhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 899999999999999999999999988655 44466889999999999997 599999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|++|+||||.++||..-|.++...++++ +.|.|.|++|||-+||..++|||+||++|+|...|+|+++-.+
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999985 3499999999999999999999999999999999999998654
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-48 Score=437.64 Aligned_cols=224 Identities=30% Similarity=0.461 Sum_probs=204.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+|+++||+|.|++.+ ..+.+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|.++... ..
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 488999999996321 135799999999999999999999999999999999999999999999999998642 23
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
+.|++|||+||+..+++.+|++||+.+.....+.+.++.++++.++++.+||. ++.|+++.+||||||||++|||||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~--~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999877777777777788899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|++|+|||||+||||.+++.++++|++++ + |.|||++||+|+++.++|||+++|++|++++.|+++++..
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999988854
No 19
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.4e-50 Score=403.29 Aligned_cols=221 Identities=32% Similarity=0.568 Sum_probs=204.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--cHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~~~~ 702 (949)
..+.++||.|+|++ +++|+++||+|++||++||+|||||||||+|.|++|+.+|++|+|.++|.||+. ...+
T Consensus 3 ~~L~a~~l~K~y~k------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYKK------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhCC------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 35889999999984 679999999999999999999999999999999999999999999999999986 3356
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~--~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+|..|||.||++.+|..|||+||+.....++....+ +.+.+++++|+++++.+ .+++++.+||||||||+.|||||
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h--lr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH--HhcCcccccccchHHHHHHHHHH
Confidence 778899999999999999999999988887764444 44556889999999984 89999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+.+|+.++||||++|+||.+...+.++|+.++ +|-.|++|-|+..|...+|||..||.+|++.+.|+|+++.+
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999975 59999999999999999999999999999999999999865
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=409.97 Aligned_cols=204 Identities=28% Similarity=0.467 Sum_probs=191.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..+.+++++|.|++ ..||+|+||+|++||+++|+||+|||||||||+|+|+.+|++|+|.++|..+.. -.
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36899999999974 689999999999999999999999999999999999999999999999998843 24
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
..+||+||++.|+|.+||+||+.+...+.+.++++.+++++++|+.+||. ++.|+++++||||||||++|||||+.+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~--~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA--GFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc--chhhcCccccChHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999999998888888888999999999997 5999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
+||+||||+++||..+|..+.+.+.++ +.++||+++|||.+||-.++|||++|.++
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999884 45899999999999999999999999994
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-48 Score=433.35 Aligned_cols=221 Identities=26% Similarity=0.452 Sum_probs=205.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..+
T Consensus 5 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~ 77 (351)
T PRK11432 5 NFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQ 77 (351)
T ss_pred cEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHH
Confidence 47999999999973 56999999999999999999999999999999999999999999999999986532 345
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
++|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999988777777777788999999999997 4889999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+++|||||++|||+..|+++++.|+++. + |+|+|++|||++|+..+||||++|++|+++..|+++++..+
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999863 3 89999999999999999999999999999999999998654
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.6e-48 Score=433.11 Aligned_cols=221 Identities=30% Similarity=0.502 Sum_probs=204.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHH
Confidence 36999999999973 56999999999999999999999999999999999999999999999999986533 246
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+||+..+|+.+||+||+.|..+.++.++++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999987777777777788999999999997 4899999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+++|||||++|||+.+|+.+++.|+++ ++ |.|+|++||+++|+..+||||++|++|+++..|+++++.++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999986 43 89999999999999999999999999999999999998754
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=433.10 Aligned_cols=221 Identities=24% Similarity=0.460 Sum_probs=203.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHC
Confidence 5899999999932 257999999999999999999999999999999999999999999999999986532 2357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.|||+||++.+|+.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999987776766667778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||||+|||+.+|+.+++.|+++ ++ |.|+|++||+++|+..+||||++|++|+++..|+++++.++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 89999999999999999999999999999999999998654
No 24
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-47 Score=404.71 Aligned_cols=217 Identities=42% Similarity=0.697 Sum_probs=198.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.....+.+++
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999963 56999999999999999999999999999999999999999999999999886544556778
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+..+.++...++.+++++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666655555677889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+||||||+|||+.+++.+++.|++. ++ |+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999985 44 89999999999999999999999999999999988765
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-47 Score=408.36 Aligned_cols=219 Identities=32% Similarity=0.576 Sum_probs=197.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HHH
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~~ 702 (949)
|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999963 5699999999999999999999999999999999999999999999999998642 245
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++.+||+||++.+++.+|++||+.+..+.. +.+.++..+++.++++.++|. +..++++++|||||||||+||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999999865433 344455567889999999996 4779999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|+++||||||+|||+.+++.+++.|++. + .|+|||++||++++++.+|||+++|++|++++.|+++++..
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999986 3 48999999999999999999999999999999999988764
No 26
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.4e-47 Score=432.72 Aligned_cols=221 Identities=27% Similarity=0.446 Sum_probs=204.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc--ceEEEcCeecCccHHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts--G~I~i~G~di~~~~~~~ 703 (949)
.|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.... ..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PH 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HH
Confidence 4899999999973 469999999999999999999999999999999999999999 99999999986432 24
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.|||++|+..+|+.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++++|||||||||+|||||+.+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987777777777788999999999997 489999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC--CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~--g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
|+++||||||+|||+..|+.+++.|+++ ++ |.|+|++||+++|+..+||||++|++|+++..|+++++.++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999985 33 799999999999999999999999999999999999997653
No 27
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-48 Score=414.73 Aligned_cols=229 Identities=28% Similarity=0.486 Sum_probs=207.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCe---ecCccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~---di~~~~~~ 702 (949)
+|+++|++|.|+. ..|++|||++|+.||.+||+||||||||||||+|+||+.|++|+|.++|. |.+. ...
T Consensus 2 ~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 6889999999974 67999999999999999999999999999999999999999999999999 6554 222
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g--~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
..++|||++||..||+.|||.||+.|..+.+. .+..+++.+++++|+.++|+ +..++++.+||||||||+++||||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHHHHHHHHHh
Confidence 34789999999999999999999999987763 23467889999999999997 599999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCc
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 858 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~ 858 (949)
+.+|++|+||||+++||...|+++..-|++. .+ |.|.+++|||++|+.++||||++|++|+|...|+++++..+.+..
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999999985 33 899999999999999999999999999999999999998776665
Q ss_pred EEEEE
Q 002236 859 YVFTM 863 (949)
Q Consensus 859 y~l~i 863 (949)
++..+
T Consensus 233 fV~~f 237 (345)
T COG1118 233 FVARF 237 (345)
T ss_pred ceecc
Confidence 54433
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.6e-48 Score=411.86 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=199.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+++++||+..|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ..+++.
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 5889999999973 689999999999999999999999999999999999999999999999999976 566777
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l----~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+.+||+||.......+||+|-+.++..- .+...++.++.++++|+.+|+. +++++.+.+||||||||+.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHHHHHHH
Confidence 8999999999888899999999875321 1223455667899999999997 499999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+++|+|++|||||+.||+..+.++++++++.. +|+|||+++||++.|.++|||+++|++|++.+.|+|+++
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999863 589999999999999999999999999999999998875
No 29
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.1e-47 Score=400.97 Aligned_cols=220 Identities=54% Similarity=0.873 Sum_probs=200.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|++. .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++.......+++
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999631 256999999999999999999999999999999999999999999999999986544566788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+..+.++.+..+.+++++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877766655555567889999999996 477899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|++++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 220 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHcC
Confidence 999999999999999999999998766799999999999999999999999999999999988763
No 30
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-47 Score=396.92 Aligned_cols=222 Identities=28% Similarity=0.471 Sum_probs=204.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc----cH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DM 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~----~~ 700 (949)
.+|+++||+|+|++ ++.||+||||+|++||+++|+|++|||||||||+|.|+..|++|+|.++|.++.. ..
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47999999999964 4789999999999999999999999999999999999999999999999999864 45
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHh--------hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYG--------RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~--------~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq 772 (949)
+++|++|||++|++.|.+.+||.+|+..+. .+-|+..++.+..+-++|+++|+. +++.+++++|||||+|
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~--~~A~qra~~LSGGQQQ 154 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL--DKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH--HHHHHHhccCCcchhH
Confidence 678899999999999999999999998743 233566677788899999999997 4899999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
||+|||||+.+|++++.|||+++|||.+.+.+++.|+++ ++|.|||++-|+++.|.++||||+-|++|+++.+|++.+
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 999999999999999999999999999999999999985 469999999999999999999999999999999999988
Q ss_pred HHH
Q 002236 851 LKA 853 (949)
Q Consensus 851 Lk~ 853 (949)
+..
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 753
No 31
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=405.55 Aligned_cols=222 Identities=32% Similarity=0.546 Sum_probs=207.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC--ccHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~--~~~~~ 702 (949)
.+++++++++.|+++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ....+
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368899999999752 57999999999999999999999999999999999999999999999999987 56778
Q ss_pred hhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+|+++||++|++ .++.. ||+|.+.|...-.|++.++++++++++++.+++. +++++.+.+|||||||||+||.+|
T Consensus 77 ~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~--~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLE--ELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch--hhccCCccccCCcceeeHHhhHHH
Confidence 999999999987 55554 9999999999999999999999999999999997 479999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+.+|++++||||||||||.+++.+++++++++ + |+|||++||||+++..+|||+++|++|+++..|+|+++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999974 4 68999999999999999999999999999999999988765
No 32
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-47 Score=426.18 Aligned_cols=225 Identities=31% Similarity=0.492 Sum_probs=203.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+|+++||+|.|++.+ .++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ..
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999997311 135799999999999999999999999999999999999999999999999998642 22
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
..+++|||+||++.+++.+|++||+.+.....+.+..+.+++++++++.+||. +..++++.+||||||||++||+||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999987766766666677899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||++++++.+|||+++|++|+++..|+++++...
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999986 33 89999999999999999999999999999999999998754
No 33
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.3e-47 Score=398.69 Aligned_cols=217 Identities=34% Similarity=0.604 Sum_probs=196.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++|++|.|+++. ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 478999999997421 112699999999999999999999999999999999999999999999999998765556678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++++.+||||||||+++|+||+.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999877766665556678899999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+++|||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|+++..|
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999986 46899999999999999999999999999998654
No 34
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-47 Score=404.98 Aligned_cols=216 Identities=28% Similarity=0.499 Sum_probs=190.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++|+++.|++ ++||+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.+.|+++....+ +
T Consensus 3 ~~i~v~nl~v~y~~------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 46999999999974 269999999999999999999999999999999999999999999999998765322 4
Q ss_pred ccEEEEcCCC---CCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 705 TSMGVCPQED---LLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 705 ~~iG~~pQ~~---~L~~~lTv~E~L~~~~~l~----g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
.+|||+||.. .-|| +||+|-+.+....+ +...++.+++++++|+++|+. +++|+++++|||||+||+-||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHHHH
Confidence 6899999964 3344 69999998853221 122345589999999999998 599999999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|||+.+|++++|||||+|+|+.++..+.++|++++ +|+||+++|||++.+.++||||+.| |+++.|.|++++..
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 99999999999999999999999999999999975 4999999999999999999999888 57899999998864
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.2e-47 Score=396.83 Aligned_cols=213 Identities=28% Similarity=0.461 Sum_probs=191.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+++++||+|.|+... ....||+++||+|++||+++|+||+||||||||++|.|+.+||+|+|+++|.|+... ..
T Consensus 1 ~i~~~~v~k~y~~~~--~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCC--cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 367899999997532 236899999999999999999999999999999999999999999999999998642 23
Q ss_pred Hh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 702 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 702 ~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+. +++|||++|+..|.+.+||+||+.+...+.+.+..+.+++++++++.+||.+ ...++++.+|||||||||+|||||
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~-~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-hhccCCchhcCHHHHHHHHHHHHH
Confidence 33 4679999999999999999999999888888776567888999999999974 344488999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
+.+|++|+.||||..||+.+.+.+++++++. + .|+|||++|||.+.|. .|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 9999999999999999999999999999986 3 4899999999998887 7999999999994
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.6e-47 Score=425.82 Aligned_cols=220 Identities=27% Similarity=0.452 Sum_probs=200.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHC
Confidence 5889999999973 56999999999999999999999999999999999999999999999999986432 3457
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~----g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
++||+||++.+|+.+|++||+.+..+.. +.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999876542 334556678899999999997 4889999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
.+|+++||||||+|||+.+|+.+++.|+++. + |.|+|++||+++++..+||||++|++|+++..|+++++..+
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999863 4 89999999999999999999999999999999999998654
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7e-47 Score=397.46 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+++++|+++.|++. .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24699999999999999999999999999999999999999999999999988531 22
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
..++.+||+||++.+++.+|++||+.+..+.++...++.++++.++++.++|. +..++++.+||||||||+++|+||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999876665555455667889999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
.+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999986 4589999999999999999999999999975
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-47 Score=396.91 Aligned_cols=211 Identities=31% Similarity=0.506 Sum_probs=189.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhcc
Confidence 468999999963 56999999999999999999999999999999999999999999999999986422 34578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+.....+......+++++++++.+++. +..++++.+||||||||++||+||+.+|++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998865555544445567789999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.++++|++. + +|+|||++||++++++.+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999985 3 4899999999999999999999999999998765
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1e-46 Score=427.34 Aligned_cols=222 Identities=28% Similarity=0.465 Sum_probs=204.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++|++|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 346999999999973 56999999999999999999999999999999999999999999999999986432 23
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||+||++.+|+.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987766666666778899999999997 489999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+++|||||++|||+..|+.+++.|+++ ++ |.|+|++|||++|+..+||||++|++|+++..|+++++..+
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999986 33 89999999999999999999999999999999999998654
No 40
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=426.68 Aligned_cols=223 Identities=28% Similarity=0.455 Sum_probs=204.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-PPY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-CHH
Confidence 347999999999963 5699999999999999999999999999999999999999999999999998643 235
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||+||++.+|+.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+||||||||++|||||+.+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999987766666677788999999999997 488999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
|++||||||++|||+..|+.+++.|+++ + .|.|+|++|||++|+..+|||+++|++|+++..|+++++..+.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999875 4 4899999999999999999999999999999999999987543
No 41
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-46 Score=411.30 Aligned_cols=226 Identities=31% Similarity=0.496 Sum_probs=199.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc---HHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~---~~~ 702 (949)
.|+++||+|.|++..+ ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4889999999974211 124699999999999999999999999999999999999999999999999998642 245
Q ss_pred hhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
.++++||+||++ .++ .+|++||+.+.....+.+.++..++++++++.+||......++++.+||||||||++||+||
T Consensus 81 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 678999999986 344 47999999987666677777777889999999999521368999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+.+|++|||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999986 43 8999999999999999999999999999999999999754
No 42
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-47 Score=396.93 Aligned_cols=228 Identities=26% Similarity=0.444 Sum_probs=204.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--cHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~~~~ 702 (949)
.++.++||++.|+++.. ..+||++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|.++.. ..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 46899999999986321 2369999999999999999999999999999999999999999999999987753 2335
Q ss_pred hhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
.++.+.++|||+ .|-|..||++.|.=..+.+|.+.. ++++.++|+.+||.+ +++++++.+|||||+||++|||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~-~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP-SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH-HHHhcCchhcChhHHHHHHHHHHh
Confidence 678999999997 589999999999877777776543 455999999999985 799999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCC
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 857 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~--g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~ 857 (949)
+.+|++||||||||+||+..+.++|+++.+.++ |-|+|++|||+..++.+||||+||++|++++.++.+++++....
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h 235 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCcc
Confidence 999999999999999999999999999998754 67999999999999999999999999999999999999876433
No 43
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-46 Score=398.98 Aligned_cols=224 Identities=30% Similarity=0.481 Sum_probs=199.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H---H
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~---~ 701 (949)
+|+++|++|.|+++. ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999997421 013799999999999999999999999999999999999999999999999998642 1 2
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
..++.+||+||++.+++.+|++||+.+....++.......+.+.++++.++|. +..++++.+||||||||++||+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998866555555455567889999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999986 44 8999999999999999999999999999999999888753
No 44
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=425.82 Aligned_cols=219 Identities=27% Similarity=0.456 Sum_probs=201.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHC
Confidence 5899999999973 56999999999999999999999999999999999999999999999999986432 2357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.|||+||+..+|+.+|++||+.+..+.++.+.++.+++++++++.++|. +..++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999987766666666678899999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||||||+|||+.+|+.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999986 43 8999999999999999999999999999999999999854
No 45
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.1e-47 Score=382.66 Aligned_cols=215 Identities=27% Similarity=0.432 Sum_probs=203.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc----cHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~----~~~ 701 (949)
+|+++|++|.|++ .+.||+||||+|++||++-|.||+||||||++|+|.+.++||+|+|.++|+|+.. +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5889999999985 3679999999999999999999999999999999999999999999999999964 456
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
-+|++||+|+|+.-|.+++||+||+.|..++.|.+++++++++.++|+.+||. +.++..+.+||||||||++||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~--~k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK--HKARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc--hhhhcCccccCchHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999997 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
.+|++||.||||.+|||....++++++.+.. .|.||++.|||.+.++.+-.|++.+++|+++.+..
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999974 69999999999999999999999999999987643
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-47 Score=388.48 Aligned_cols=223 Identities=27% Similarity=0.442 Sum_probs=208.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-----ceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-----GTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts-----G~I~i~G~di~~- 698 (949)
..++++||++.|+ ++.||+|||++|++++++||+||+||||||+||++..+....+ |+|.++|++|..
T Consensus 6 ~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 4689999999998 3789999999999999999999999999999999999987765 999999999965
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqRL 774 (949)
+..++|+++|+|+|.+.-|| +|++||+.+..+++|+..++.++.|++.|+...|.++ +.+++.+..|||||||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 57789999999999999999 8999999999999998888899999999999999752 345677889999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+-+|+||+||||||+|||.+..++-++|.++++.-|||++||+|..|.+++|+.+++..|++++.|+.+++...
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-46 Score=399.12 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=195.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH-hh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~-~r 704 (949)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999998642 222 34
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL----------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~----------~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
+.+||+||++.+++.+|++||+.+.....+. ...+..++++++++.+++. ...++++++||||||||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA--DLADRPAGELSYGQQRRL 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc--chhhCChhhCCHHHHHHH
Confidence 6799999999999999999999886554321 1234556789999999996 478999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|+||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+|||+++|++|+++..|+++++..
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999999864 68999999999999999999999999999999999988754
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=400.63 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=195.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++.... ..++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccc
Confidence 4889999999963 56999999999999999999999999999999999999999999999999875422 2356
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~----~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.+||+||++.+++.+|++||+.+.....+. ...+..+.++++++.++|. +..++++.+||||||||++||+||+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD--WLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 899999999999999999999886554432 2334456788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|+++||||||+|||+.+++.++++|++. + .|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999986 3 38999999999999999999999999999999999988754
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.3e-46 Score=397.53 Aligned_cols=218 Identities=33% Similarity=0.573 Sum_probs=196.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH-hh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~-~r 704 (949)
++++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999963 5699999999999999999999999999999999999999999999999988542 222 34
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++.+.+||||||||+++|+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT--HLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999876555544445567788999999996 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|++++.|+.+++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999986 45899999999999999999999999999999999988764
No 50
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.7e-46 Score=397.57 Aligned_cols=222 Identities=31% Similarity=0.485 Sum_probs=199.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+++++|+++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 4789999999963 5699999999999999999999999999999999999999999999999988653334456
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.++|+||++.+++.+|++||+.+....++....+..+.+.++++.+||. +..++++.+||||||||+++|+||+.+|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988999999999877666555555567789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
++||||||+|||+.+++.+++.|++.. +|+|||++||++++++. |||+++|++|++++.|+++++.+.++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALG 224 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcC
Confidence 999999999999999999999999863 48999999999999986 99999999999999999999887653
No 51
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.4e-46 Score=424.15 Aligned_cols=225 Identities=25% Similarity=0.431 Sum_probs=202.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.+
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 6899999999973 579999999999999999999999999999999999999999999999999875 445677
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhc--CC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLK--NL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~--g~--~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
++|||+||+..++..+|++|++.+....+ .+ ..++.+++++++++.+++. +..++++.+||||||||++|||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IArAL 154 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVLLARAL 154 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999999999999998753211 11 1345567899999999997 488999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH------HHH
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE------LKA 853 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~------Lk~ 853 (949)
+++|+++||||||+|||+.++++++++|+++. +|+|||++||+++++.++|||+++|++|+++..|++++ +.+
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~ 234 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHH
Confidence 99999999999999999999999999999864 68999999999999999999999999999999999997 556
Q ss_pred hcCCc
Q 002236 854 RYGGS 858 (949)
Q Consensus 854 ~~g~~ 858 (949)
.|+..
T Consensus 235 ~~~~~ 239 (402)
T PRK09536 235 AFDAR 239 (402)
T ss_pred HhCCc
Confidence 67643
No 52
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2e-46 Score=422.90 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=193.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh----hccEEEEcCCCCCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI----YTSMGVCPQEDLLWET 719 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~----r~~iG~~pQ~~~L~~~ 719 (949)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +..+. |+++|||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 679999999999999999999999999999999999999999999999999875 33333 6789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 002236 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 720 lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~ 799 (949)
+||+||+.+...+.+.+.++..+++.++++.+||. .+.++++.+||||||||++|||||+.+|+|+||||||+||||.
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~--~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE--EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99999999987777777777788999999999996 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 800 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 800 sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+++.+.+.+.++. .|+|||++||+++|+..+||||++|++|+++..|+++++..+
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999863 489999999999999999999999999999999999998654
No 53
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-47 Score=405.99 Aligned_cols=234 Identities=29% Similarity=0.443 Sum_probs=214.0
Q ss_pred CcEEEEeEEEEcCCCC---------C---------CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 002236 625 HAIISDNLRKIYPGRD---------G---------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~---------~---------~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts 686 (949)
..|+++|+.|.||++. | .+....|+|+||+|++|||+.|+|-+|||||||+|+|.+|++||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3589999999998641 1 123567899999999999999999999999999999999999999
Q ss_pred ceEEEcCeecCc----cHHHh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 002236 687 GTAYVQGLDIRT----DMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761 (949)
Q Consensus 687 G~I~i~G~di~~----~~~~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~ 761 (949)
|+|.++|.|+.. ...++ |+++++|||...|+|..||.||..|...++|+++++.++++.+.|+.+||. ++.++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~--~~~~~ 160 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYADK 160 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch--hhhhc
Confidence 999999999964 22333 368999999999999999999999999999999999999999999999997 59999
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 762 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 762 ~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
++.+|||||||||.+||||+.+|+|+++|||+|+|||--|.++.+.|.++ + -+||||++|||++||.++.|||+||++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 99999999999999999999999999999999999999999999999875 3 389999999999999999999999999
Q ss_pred CEEEEEcCHHHHHHhcCCcEE
Q 002236 840 GSLQCIGNPKELKARYGGSYV 860 (949)
Q Consensus 840 G~l~~~Gs~~~Lk~~~g~~y~ 860 (949)
|+++..|+|+|+.......|+
T Consensus 241 G~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 241 GEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred CeEEEeCCHHHHHcCccHHHH
Confidence 999999999999887766664
No 54
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-46 Score=391.53 Aligned_cols=211 Identities=37% Similarity=0.646 Sum_probs=192.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999963 46999999999999 99999999999999999999999999999999999886543556788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+....++....+.+++++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666655555667889999999996 467899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+++.|++.++++|||++||++++++.+|||+++|++|+++..|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998766799999999999999999999999999998764
No 55
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=397.59 Aligned_cols=220 Identities=32% Similarity=0.509 Sum_probs=194.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HHH
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~~ 702 (949)
++++||+|.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999963 14699999999999999999999999999999999999999999999999988642 345
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~--------l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
.++.+||+||++.+++.+|++||+.+... +.+.......+++.++++.++|. ...++++.+||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--DKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--hhhCCCcccCCHHHHHHH
Confidence 67789999999999999999999986422 11222234456788999999996 478999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+||+||+.+|+++||||||+|||+.+++.+++.|++. + +|+|||++||++++++.+|||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999999986 3 4899999999999999999999999999999999998874
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 4
No 56
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.5e-46 Score=396.15 Aligned_cols=215 Identities=27% Similarity=0.472 Sum_probs=190.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEcCeecCcc--
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTD-- 699 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~-----~ptsG~I~i~G~di~~~-- 699 (949)
|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999963 46999999999999999999999999999999999999 99999999999998542
Q ss_pred -HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCCCCccccc--CCCCChhHHHHHH
Q 002236 700 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFHGGVADKQ--AGKYSGGMKRRLS 775 (949)
Q Consensus 700 -~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~~~~~~~~--~~~LSGGqKqRLs 775 (949)
....++++||+||++.++ .+|++||+.+..+..+... .+.+++++++++.+|+.+ ..+++ +.+||||||||++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HHhccCCcccCCHHHHHHHH
Confidence 345678899999999888 7999999998765554333 235678899999999963 55666 5999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
||+||+.+|+++||||||+|||+.+++.+++.|++.++.+|||++||+++++..+|||+++|++|++++.|++++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999987444999999999999999999999999999999998765
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.6e-46 Score=392.05 Aligned_cols=211 Identities=28% Similarity=0.481 Sum_probs=191.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccce
Confidence 468999999973 46999999999999999999999999999999999999999999999999985422 22468
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+..+.++...++.+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655556677889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+++.|++. + +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999999876
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-46 Score=407.86 Aligned_cols=225 Identities=23% Similarity=0.379 Sum_probs=199.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-----~~ 700 (949)
+|+++|++|.|++.. ...+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. ..
T Consensus 1 mi~~~~v~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNS-PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 488999999997421 112469999999999999999999999999999999999999999999999999852 23
Q ss_pred HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.+.++.+||++|++ .+++ .|+.||+.|.....+.+..+.++++.++++.++|.+ .+.++.+.+||||||||++||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHH
Confidence 45678999999986 5666 599999998766556666677788999999999952 3679999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++++.|+++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999864 58999999999999999999999999999999999999854
No 59
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-46 Score=424.13 Aligned_cols=228 Identities=25% Similarity=0.408 Sum_probs=202.4
Q ss_pred CcEEEEeEEEEcCCCCC------------------CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 002236 625 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 686 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~------------------~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts 686 (949)
.+|+++||+|.||.... .....+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 46888888888876320 012348999999999999999999999999999999999999999
Q ss_pred ceEEEcCeecCcc-HHH----hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 002236 687 GTAYVQGLDIRTD-MDR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 761 (949)
Q Consensus 687 G~I~i~G~di~~~-~~~----~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~ 761 (949)
|+|+++|.++... ... .++++||+||+..+++.+|++||+.+...+++.+.++.++++.++++.++|. ++.++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~--~~~~~ 160 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE--NYAHS 160 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--hhhhc
Confidence 9999999998642 221 2468999999999999999999999987777766666677899999999997 47899
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 762 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 762 ~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
++.+||||||||++|||||+.+|+++||||||+||||.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999986 3 489999999999999999999999999
Q ss_pred CEEEEEcCHHHHHHh
Q 002236 840 GSLQCIGNPKELKAR 854 (949)
Q Consensus 840 G~l~~~Gs~~~Lk~~ 854 (949)
|+++..|+++++..+
T Consensus 241 G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 241 GEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEecCCHHHHHhC
Confidence 999999999998654
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=393.11 Aligned_cols=214 Identities=29% Similarity=0.455 Sum_probs=191.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|++.. ..+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999997411 11579999999999999999999999999999999999999999999999998752 3578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+....++.+.+...++++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS--GFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999876666655555567889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEe--CCEEEEEcCH
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNP 848 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~--~G~l~~~Gs~ 848 (949)
+||||||+|||+.+++.++++|++. + +|+|||++||++++++.+|||+++|+ +|+++..++.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999986 4 48999999999999999999999999 7999987764
No 61
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.2e-46 Score=397.95 Aligned_cols=221 Identities=28% Similarity=0.481 Sum_probs=197.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-----sG~I~i~G~di~~-- 698 (949)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999973 46999999999999999999999999999999999999998 9999999999864
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqRL 774 (949)
.....++.+||+||++.+++ +|++||+.+..+.++. +..+..++++++++.+||.+. +..++++.+||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23456788999999999998 9999999986655542 344556788999999999610 257889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987656999999999999999999999999999999999988754
No 62
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.5e-46 Score=396.46 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=197.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~~ 702 (949)
+++++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 4789999999963 569999999999999999999999999999999999999999999999999864 2345
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
+++.+||+||++.+++.+|++||+.+... ..+....+..+++.++++.+||. +..++++.+||||||||++||+||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh--HHHhcChhhcCHHHHHHHHHHHHHh
Confidence 67789999999999999999999987542 23444455667789999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|++++|||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 9999999999999999999999999999864 58999999999999999999999999999999999988754
No 63
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-46 Score=408.63 Aligned_cols=225 Identities=27% Similarity=0.423 Sum_probs=198.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-----~~ 700 (949)
.++++||+|.|++..+ ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3889999999974211 12469999999999999999999999999999999999999999999999999852 23
Q ss_pred HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.+.++.+||+||++ .+++ .|++||+.+..+..+.+.++.+++++++++.++|.+ ...++++.+|||||||||+||+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999986 4664 699999998766566666666778999999999962 3679999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+.+|+++||||||+|||+.+++.++++|+++ + .|.|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999986 3 38999999999999999999999999999999999998754
No 64
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-46 Score=397.51 Aligned_cols=222 Identities=33% Similarity=0.539 Sum_probs=198.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|+++.|++ .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999973 1469999999999999999999999999999999999999999999999998864 3445677
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+++.+|++||+.+..++.+...++..+.+.++++.+++.+.++.++++.+||||||||+++|+||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999998766665544555678899999999962126789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||||||+|||+.+++.+++.|++. ++ |+|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999986 33 8999999999999999999999999999999999988754
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-46 Score=404.37 Aligned_cols=220 Identities=29% Similarity=0.444 Sum_probs=197.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
++|+++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....
T Consensus 3 ~~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred ceEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 46899999999963 2469999999999999999999999999999999999999999999999999864 33456
Q ss_pred hccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++. .+..+|++||+.+..+..+....+.+++++++++.++|. +..++++.+||||||||++||+||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 778999999863 344579999999865555665556677899999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++.++|||+++|++|++++.|+++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999986 4589999999999999999999999999999999998764
No 66
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-47 Score=394.74 Aligned_cols=222 Identities=31% Similarity=0.471 Sum_probs=202.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~ 702 (949)
..+++++|+|+||+ ..||+|+||+|++||++||+|||||||||++|+|+|.++||+|+|.++|+||+.. ...
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 35789999999985 7899999999999999999999999999999999999999999999999999763 344
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhc-------C-----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-------N-----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~-------g-----~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
.|..|+--||...+|++|||.||+......+ + ...++..+++.++|+.+||. +.+|.++++||+||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~--~~a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG--ELADRPAGNLSYGQ 154 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc--hhhcchhhcCChhH
Confidence 5677888999999999999999998864422 1 12466778899999999997 48999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~--g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
||||.|||||+.+|++|+||||.+||.|....++.++|+++++ |.||+++.|||+.+..+||||++|+.|++++.|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999753 69999999999999999999999999999999999
Q ss_pred HHHHHh
Q 002236 849 KELKAR 854 (949)
Q Consensus 849 ~~Lk~~ 854 (949)
+++.+.
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 998764
No 67
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=7.7e-46 Score=414.44 Aligned_cols=233 Identities=24% Similarity=0.357 Sum_probs=204.4
Q ss_pred CCcEEEEeEEEEcCCCCC-------CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec
Q 002236 624 SHAIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~-------~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di 696 (949)
+.+|+++||+|.|+.+.+ ...+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999974211 0135799999999999999999999999999999999999999999999999998
Q ss_pred Ccc----HHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 002236 697 RTD----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 768 (949)
Q Consensus 697 ~~~----~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~--g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSG 768 (949)
... ...+|++|||+||++ .+++.+|++||+.+..+.. +.+.++.++++.++++.++|.+ ...++++.+|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHhcCCcccCCH
Confidence 642 234678899999997 6899999999998765443 3555667788899999999953 478999999999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 769 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 769 GqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
|||||++||+||+.+|++||+||||+|||+.+++.++++|++++ .|.|||++|||++++..+||||++|.+|++++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999863 3899999999999999999999999999999999
Q ss_pred CHHHHHHhcCC
Q 002236 847 NPKELKARYGG 857 (949)
Q Consensus 847 s~~~Lk~~~g~ 857 (949)
+++++.+....
T Consensus 245 ~~~~i~~~~~~ 255 (331)
T PRK15079 245 TYDEVYHNPLH 255 (331)
T ss_pred CHHHHHcCCCC
Confidence 99998765433
No 68
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.3e-46 Score=392.66 Aligned_cols=211 Identities=30% Similarity=0.457 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH----HH
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----DR 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~----~~ 702 (949)
|+++||+|.|++.. ..+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999997421 0157999999999999999999999999999999999999999999999999886421 12
Q ss_pred -hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 -~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++.+||+||++.+++.+|++||+.+....++....+.+++++++++.+||. +..++.+.+||||||||+++|+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhcChhhcCHHHHHHHHHHHHHc
Confidence 3568999999999999999999999876666554445567889999999996 4679999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++ +|||+++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999986 4 4899999999999998 9999999999974
No 69
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-45 Score=394.92 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=195.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HH-Hh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~-~~ 703 (949)
+|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 5889999999963 4699999999999999999999999999999999999999999999999988642 22 23
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~--------g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++.+++||||||||++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 467999999999999999999998854321 112234566789999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+|+||+.+|++++|||||+|||+.+++.++++|++.++++|||++||++++++.+|||+++|++|++++.|+++++.
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999766899999999999999999999999999999999998875
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-46 Score=388.35 Aligned_cols=209 Identities=32% Similarity=0.567 Sum_probs=190.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999963 569999999999999999999999999999999999999999999999998753 45678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+....++.+..+.++.++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh--HHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666665556677889999999996 478899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
++|||||+|||+.+++.+++.|++. ++|+|||++||+.++++.+|||+++|++|+++..|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999986 46899999999999999999999999999998654
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.2e-46 Score=389.01 Aligned_cols=209 Identities=28% Similarity=0.466 Sum_probs=188.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 24699999999999999999999999999999999999999999999999998642 22
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.+++.+||+||++.+++.+|++||+.+....++......+++++++++.+++. +..++.+.+||||||||++||+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999876655554455667889999999996 4678999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
.+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999986 458999999999999999999999999985
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.9e-46 Score=387.74 Aligned_cols=207 Identities=32% Similarity=0.596 Sum_probs=188.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999963 5799999999999999999999999999999999999999999999999988643 456778
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.++....+. .+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK--DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999987655442 245688899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+|||+++|++|+++..|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999864 6899999999999999999999999999998765
No 73
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=404.73 Aligned_cols=225 Identities=25% Similarity=0.410 Sum_probs=198.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-----~~ 700 (949)
.|+++||+|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 5889999999973210 02469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
...++.+||+||++ .++ .+|++||+.+.....+...++..++++++++.++|.. ++.++++++||||||||++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE-DLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhhCCcccCCHHHHHHHHHHH
Confidence 45667899999996 455 5799999987655555555666778899999999952 3689999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||++++++.+|||+++|++|+++..|+++++.+
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 68999999999999999999999999999999999998764
No 74
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=403.90 Aligned_cols=225 Identities=24% Similarity=0.414 Sum_probs=199.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-----~~ 700 (949)
.++++||+|.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4889999999963210 12469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
..+++.|||+||++ .+++ .|++||+.+.....+.+.++..++++++++.+||.. ...++.+.+||||||||++||+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-DVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 46788999999985 5666 499999998765556666667788999999999952 3678999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999863 48999999999999999999999999999999999988754
No 75
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=403.16 Aligned_cols=224 Identities=26% Similarity=0.431 Sum_probs=200.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+++++|+++.|++.. .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ...++
T Consensus 3 ~~l~~~~l~~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ---EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCC---cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3689999999996421 2469999999999999999999999999999999999999999999999999864 34456
Q ss_pred hccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++++||+||++ .++..+|++||+.+..+..+...++..++++++++.+||. +..++.+.+||||||||++||+||+.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 78999999997 4677789999999876666666666778899999999997 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||++++++ .|||+++|++|+++..|+++++.++
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999986 33 899999999999995 7999999999999999999987643
No 76
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-45 Score=389.10 Aligned_cols=217 Identities=28% Similarity=0.450 Sum_probs=192.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH-hh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 704 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~-~r 704 (949)
|+++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ..+ .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999988642 222 35
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l-~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
+.+||+||++.+++.+|++||+.+.....+ ..+..+++.++++.+ ++. ...++++.+||||||||+++|+||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhh--hhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999998765443 233455677888888 465 467999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|++++|||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|+++..|+++++..
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999864 68999999999999999999999999999999999887753
No 77
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=407.84 Aligned_cols=225 Identities=26% Similarity=0.377 Sum_probs=198.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-------
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------- 698 (949)
.|+++||++.|++.. ...+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKL-PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCC-CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 488999999997421 112469999999999999999999999999999999999999999999999887521
Q ss_pred ------------------cHHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCc
Q 002236 699 ------------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 758 (949)
Q Consensus 699 ------------------~~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~ 758 (949)
....+++.|||+||++ .++ ..||+||+.|.....+.+.++.+++++++++.+||.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~ 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-SY 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hh
Confidence 2345678999999985 455 4699999998766667777777888999999999962 47
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 759 ~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im 837 (949)
.++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999986 45999999999999999999999999
Q ss_pred eCCEEEEEcCHHHHHH
Q 002236 838 VDGSLQCIGNPKELKA 853 (949)
Q Consensus 838 ~~G~l~~~Gs~~~Lk~ 853 (949)
++|++++.|+++++.+
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 239 KDGKIIKDGDTYDILS 254 (305)
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
No 78
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.9e-45 Score=394.91 Aligned_cols=220 Identities=28% Similarity=0.421 Sum_probs=197.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc------
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~------ 699 (949)
+++++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 6899999999963 4699999999999999999999999999999999999999999999999988531
Q ss_pred ---HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 700 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 700 ---~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
....++.+||+||++.+++.+|++||+.+... .++.......+++.++++.+||. ...++++++||||||||++
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA--GKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--chhhCChhhCChHHHHHHH
Confidence 23456789999999999999999999987543 23444445567788999999996 4679999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+||+.+|+++||||||+|||+.+++.+++.|+++. +|+|||++||++++++.+|||+++|++|+++..|+++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 58999999999999999999999999999999999988754
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-45 Score=394.73 Aligned_cols=220 Identities=29% Similarity=0.464 Sum_probs=193.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+|+++|+++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 4789999999962 24699999999999999999999999999999999999999999999999988542 23
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~--------l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
..++.+||+||++.+++.+|++||+.+... +.+....+.++++.++++.++|. ...++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHH
Confidence 357789999999999999999999976321 11112234456788999999996 47899999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
++||+||+.+|+++||||||+|||+.+++.++++|++. + +|+|||++||+++++..+||++++|++|+++..|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999999986 4 389999999999999999999999999999999998876
Q ss_pred H
Q 002236 852 K 852 (949)
Q Consensus 852 k 852 (949)
.
T Consensus 234 ~ 234 (243)
T TIGR02315 234 D 234 (243)
T ss_pred C
Confidence 3
No 80
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.8e-45 Score=398.84 Aligned_cols=222 Identities=23% Similarity=0.389 Sum_probs=197.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----H
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~ 700 (949)
.+|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999988532 1
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
...++.+||+||+..+++.+|++||+.+..... +......++++.++++.++|. +..++++.+||||||||++||+|
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR--GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHH
Confidence 234678999999999999999999998754332 233444556788899999996 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+.+|+++||||||+|||+.+++.++++|++. ++ |+|||++||+++++..+|||+++|++|+++..|+++++.++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999986 33 89999999999999999999999999999999999988653
No 81
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=409.84 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=204.7
Q ss_pred CcEEEEeEEEEcCCCCC----CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-
Q 002236 625 HAIISDNLRKIYPGRDG----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD- 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~----~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~- 699 (949)
.+|+++||+|.|+.+.+ ...+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46999999999974221 0135799999999999999999999999999999999999999999999999998642
Q ss_pred ---HHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 700 ---MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 700 ---~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
....|++|||+||++ .|.+.+|+.+++....+.. +...++.++++.++++.+||.+ ...++++++||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHH
Confidence 234678899999997 6899999999998655443 4555566788999999999963 36799999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
++||+||+.+|++||+||||+|||+.+++.++++|++++ .|.|||++|||++++..+||||++|.+|++++.|+.+++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999863 489999999999999999999999999999999999999
Q ss_pred HHhcCCcE
Q 002236 852 KARYGGSY 859 (949)
Q Consensus 852 k~~~g~~y 859 (949)
.+.....|
T Consensus 243 ~~~p~hpy 250 (327)
T PRK11308 243 FNNPRHPY 250 (327)
T ss_pred hcCCCCHH
Confidence 77544434
No 82
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.8e-45 Score=417.15 Aligned_cols=209 Identities=27% Similarity=0.438 Sum_probs=190.2
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCe----ecCc-cH---HHhh-ccEEEEcCCC
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL----DIRT-DM---DRIY-TSMGVCPQED 714 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~----di~~-~~---~~~r-~~iG~~pQ~~ 714 (949)
.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+ ++.. +. .+.| ++|||+||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 467999999999999999999999999999999999999999999999997 4432 11 2233 5899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC
Q 002236 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 794 (949)
Q Consensus 715 ~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs 794 (949)
.+++.+|++||+.+.....+.+..+.+++++++++.+||. ++.++++.+||||||||++|||||+.+|+|+||||||+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~--~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA--QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 9999999999999887777776666778899999999997 48899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 795 GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 795 GLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||||.+++.+++.|.++. .|+|||++||+++++.++||||++|++|+++..|+++++..+
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 194 ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999863 389999999999999999999999999999999999998654
No 83
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=401.73 Aligned_cols=221 Identities=27% Similarity=0.435 Sum_probs=197.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~~ 702 (949)
+|+++|+++.|++ ++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ...+
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 6999999999962 2569999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
+++.+||+||++. .+...|++||+.+.....+.+.++..++++++++.+||. .+.++++.+||||||||++||+||+
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999873 234579999998865545666666677899999999997 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999998864
No 84
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=407.61 Aligned_cols=226 Identities=22% Similarity=0.374 Sum_probs=199.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----- 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----- 699 (949)
.+|+++|+++.|++.. ...+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ-ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 4799999999997421 1124699999999999999999999999999999999999999999999999987532
Q ss_pred ------------HHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC
Q 002236 700 ------------MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 765 (949)
Q Consensus 700 ------------~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~ 765 (949)
....++.+||++|++ .+++. |++||+.+.....+.+.++..++++++++.++|.+ ...++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~ 176 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-SYLERSPFG 176 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-hHhcCCccc
Confidence 345678999999986 57764 99999988654445555666778899999999952 368999999
Q ss_pred CChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 766 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 766 LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
||||||||++|||||+.+|++|||||||+|||+.+++.++++|++. ++|+|||++||+++++.++|||+++|++|++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 469999999999999999999999999999999
Q ss_pred EcCHHHHHH
Q 002236 845 IGNPKELKA 853 (949)
Q Consensus 845 ~Gs~~~Lk~ 853 (949)
.|+++++.+
T Consensus 257 ~g~~~~~~~ 265 (320)
T PRK13631 257 TGTPYEIFT 265 (320)
T ss_pred eCCHHHHhc
Confidence 999998854
No 85
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-45 Score=395.43 Aligned_cols=223 Identities=26% Similarity=0.457 Sum_probs=198.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCcc
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~~ 699 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 11 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 47999999999963 4699999999999999999999999999999999999985 899999999988532
Q ss_pred ---HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 700 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 700 ---~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
....++.+||+||++.+++ +|++||+.+..+..+.+.++.+++++++++.+++.. ....++++.+||||||||+
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 2345678999999999888 899999998766555555555667889999999841 1356889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||+||+.+|+++||||||+|||+.+++.++++|+++++|+|||++||+++++..+|||+++|++|+++..|+++++...
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999999876689999999999999999999999999999999999988643
No 86
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=399.84 Aligned_cols=222 Identities=26% Similarity=0.428 Sum_probs=198.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+++++|++|.|++ .+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....
T Consensus 2 ~~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 36899999999963 2459999999999999999999999999999999999999999999999999864 34566
Q ss_pred hccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++. .+...|++||+.+.....+...+..+++++++++.++|. +..++.+.+||||||||++||+||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999973 233579999998765544555566667889999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.++++|++++ + |+|||++||++++++++|||+++|++|+++..|+++++.+
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999999999999999999999999999864
No 87
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=393.52 Aligned_cols=223 Identities=26% Similarity=0.414 Sum_probs=197.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 46899999999963 4699999999999999999999999999999999999987 49999999999852
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~--~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
.....++++||+||++.+++.+|++||+.+....++. +.++..++++++++.+++.+ ....++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 3345677899999999999999999999886554443 23445567889999999842 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 237 ~ 237 (253)
T PRK14267 237 E 237 (253)
T ss_pred h
Confidence 4
No 88
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=401.97 Aligned_cols=219 Identities=28% Similarity=0.427 Sum_probs=196.2
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH---h
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR---I 703 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~---~ 703 (949)
.++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ... .
T Consensus 26 ~~~~~~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQ------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCC------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 46789999973 5799999999999999999999999999999999999999999999999988542 111 2
Q ss_pred -hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 -r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++++||+||++.+++.+|++||+.+.....+.......++++++++.++|. +..++++.+||||||||++||+||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999999876655554455567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|+++||||||+|||+.+++.++++|+++ + +|+|||++||++++++.+|||+++|++|+++..|+++++.+.
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999986 3 389999999999999999999999999999999999988653
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2e-45 Score=385.34 Aligned_cols=209 Identities=26% Similarity=0.434 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HHH
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~~ 702 (949)
++++|++|.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999963 24699999999999999999999999999999999999999999999999988642 234
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.++.++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. ...++++.+||||||||+++|+||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS--HKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 6778999999999999999999999876665555555667889999999996 36789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999986 4689999999999999999999999999974
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3e-45 Score=386.97 Aligned_cols=211 Identities=24% Similarity=0.404 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
+|+++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 4789999999942 24699999999999999999999999999999999999999999999999988541 22
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
..++.+||+||++.+++.+|++||+.+....++...++..++++++++.+++. +..++.+.+||||||||+++|+||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHH
Confidence 35688999999999988999999999876666555555566788999999996 3679999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 843 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~ 843 (949)
.+|+++||||||+|||+.+++.++++|++. ++|+|||++||++++++.+|||+++|++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999986 45899999999999999999999999999985
No 91
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-45 Score=388.50 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=192.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-H--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-D-- 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-~-- 701 (949)
.+++++|++|.|+++. ..+.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 3689999999997421 1146999999999999999999999999999999999999999999999999986422 1
Q ss_pred -Hh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 702 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 702 -~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
.. ++.+||+||++.+++.+|++||+.+...+.+...++.++++.++++.+||. +..++.+.+||||||||+++|+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE--HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 22 367999999999999999999999865555555555667889999999996 47889999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|+.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++.. ||+++|++|+++..|+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999986 3 489999999999999875 69999999999987763
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=391.87 Aligned_cols=220 Identities=31% Similarity=0.543 Sum_probs=197.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~~ 703 (949)
+++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 6899999999963 5699999999999999999999999999999999999999999999999998642 2335
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++.+++.+|++||+.+..++. +...++.++.++++++.+++. +..++++++||||||||+++|+||+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE--HLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH--HHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999998865443 233345567789999999996 46789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.+++++++.+ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998864 58999999999999999999999999999999999988743
No 93
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=399.76 Aligned_cols=220 Identities=25% Similarity=0.394 Sum_probs=196.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~~ 703 (949)
+++++|++|.|++ ++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999963 24699999999999999999999999999999999999999999999999998642 3456
Q ss_pred hccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++. .+..+|++||+.+..+..+....+.+++++++++.++|. ...++++.+||||||||++||+||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE--KYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999975 356689999999876655666666677899999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 5999999999999996 599999999999999999998754
No 94
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=400.52 Aligned_cols=222 Identities=24% Similarity=0.419 Sum_probs=199.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~~ 703 (949)
.+++++||+|.|++. .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++... ...+
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 369999999999631 25699999999999999999999999999999999999999999999999998643 3456
Q ss_pred hccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.|||+||++ .++..+|++||+.+..+..+...++.+++++++++.+||. ...++++.+||||||||++||+||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 77899999997 3677789999999876666666666677899999999997 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|++|||||||+|||+.+++.++++|+++. + |+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 3 8999999999999985 99999999999999999988764
No 95
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=400.34 Aligned_cols=227 Identities=30% Similarity=0.453 Sum_probs=200.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 701 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~ 701 (949)
+++++++|++|+|++..+...+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... ..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 4579999999999742111135699999999999999999999999999999999999999999999999998642 34
Q ss_pred HhhccEEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 702 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
+.++.+||+||++. ++ ..|+.|++.|.....+.+..+.+++++++++.+||. ++.++++.+||||||||++||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY--EYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHH
Confidence 56788999999974 44 469999999876655666666678899999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999986 4 48999999999999986 999999999999999999998654
No 96
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=391.75 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=197.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-c
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-D 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~-~ 699 (949)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999963 4699999999999999999999999999999999999984 79999999999864 3
Q ss_pred HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 002236 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 700 ~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~--~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRLs 775 (949)
....++.+||+||++.+++.+|++||+.+..+..+. ..++..+.+.++++.++|.+ ....++.+.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445678899999999989999999999986554432 23445677899999999852 12468899999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+||+.+|++++|||||+|||+.+++.+++.|++.++|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999999999999999999999999999999999987678999999999999999999999999999999999998854
No 97
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.9e-45 Score=383.92 Aligned_cols=203 Identities=29% Similarity=0.471 Sum_probs=180.0
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccE
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 707 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~i 707 (949)
+++|++|.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++++
T Consensus 1 ~~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSI 73 (205)
T ss_pred CcccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcce
Confidence 36899999963 1469999999999999999999999999999999999999999999999998853 3456789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 708 GVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 708 G~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
||+||++. .+..+|++||+.++....+ ..++++.++++.++|. ++.++++.+||||||||+++||||+.+|++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCc--hhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999974 2345799999988654332 1235788999999997 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 843 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~ 843 (949)
+||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999986 56899999999999999999999999999974
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-45 Score=383.95 Aligned_cols=208 Identities=32% Similarity=0.525 Sum_probs=184.3
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhcc
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 706 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~ 706 (949)
+++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 1 ~~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 368999999641 2569999999999999999999999999999999999999999999999998864 34456788
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 707 MGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 707 iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+||+||++. .++.+|++||+.+.....+....+.+++++++++.++|. +..++++.+||||||||+++|+||+.+|+
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~ 154 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999975 366789999998865555544445567789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|+
T Consensus 155 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999864 58999999999999999999999999985
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-45 Score=397.17 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=195.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~~ 702 (949)
+|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999963 469999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhccEEEEcCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L-~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++.+||+||++.+ +...|+.||+.+.....+....+..++++++++.+++. ++.++++.+||||||||++||+||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHHHHHHHHHHH
Confidence 67789999999753 34568999998866555555555667788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|+++||||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999864 58999999999999999999999999999999999988754
No 100
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=391.41 Aligned_cols=222 Identities=25% Similarity=0.411 Sum_probs=195.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~- 698 (949)
..|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 46999999999963 469999999999999999999999999999999999974 689999999999853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
.....++.+||+||++.+++ .|++||+.+....++.. .+..+++++++++.+++.+ ....++.+.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23456788999999998888 59999998865555442 2345677889999999852 124688899999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999988754
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.4e-45 Score=392.09 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=197.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc------
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------ 698 (949)
..++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 36899999999963 579999999999999999999999999999999999999999999999998742
Q ss_pred --------cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 699 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 699 --------~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~-~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
.....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+|+.+ ...++.+.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~G 156 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE-RAQGKYPVHLSGG 156 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHH
Confidence 12355788999999999999999999998643 2334444556678899999999963 1248899999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 770 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 770 qKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
||||++||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 599999999999999999999999999999999999
Q ss_pred HHHHH
Q 002236 849 KELKA 853 (949)
Q Consensus 849 ~~Lk~ 853 (949)
+++.+
T Consensus 237 ~~~~~ 241 (257)
T PRK10619 237 EQLFG 241 (257)
T ss_pred HHhhh
Confidence 88754
No 102
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=391.82 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=196.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
.+++++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999963 4699999999999999999999999999999999999997 59999999998753
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
.....++.+||+||++.+++ +|++||+.+.....+. ...+.++.++++++.+++.+ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23456788999999998885 8999999986554443 23345677889999998731 135688999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999999865
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 239 ~ 239 (254)
T PRK14273 239 N 239 (254)
T ss_pred C
Confidence 3
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-45 Score=388.41 Aligned_cols=219 Identities=25% Similarity=0.414 Sum_probs=196.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-------
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------- 698 (949)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5889999999963 469999999999999999999999999999999999999999999999998731
Q ss_pred cHHHhhccEEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 699 ~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~-~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
.....++++||+||++.+++.+|++||+.+ .....+....+..+++.++++.+|+. ...++.+.+||||||||++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK--PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 224567789999999999999999999975 33344444455567789999999996 478999999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+||+.+|+++||||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+|||+++|.+|+++..|+++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999988753
No 104
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.6e-45 Score=385.26 Aligned_cols=218 Identities=23% Similarity=0.382 Sum_probs=186.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH----H
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~----~ 701 (949)
+|+++|+++.|+++. ....+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999997421 1136999999999999999999999999999999999999999999999999986422 3
Q ss_pred HhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCch-hHHHH-HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 702 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGP-ALTQA-VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 702 ~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~-~~~~~-v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
..++.+||+||++ .+++.+|++||+.+.....+.... +..+. ++++++.+++.. ...++++.+||||||||+++|
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-EVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-hHhhCCchhcCHHHHHHHHHH
Confidence 5677899999998 567789999999876544432222 22222 358899999942 367899999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||+.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||++++++.+|||+++|++|+++..|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999986 34 899999999999999999999999999998754
No 105
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=392.00 Aligned_cols=220 Identities=27% Similarity=0.416 Sum_probs=196.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5889999999973 469999999999999999999999999999999999999999999999998754 334456
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--- 781 (949)
+.+||+||++.+++.+|++||+.+.....+...++.++.++++++.++|. +..++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 78999999998888899999998865433333344556788999999996 4789999999999999999999999
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ---~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|++++|||||+|||+.+++.+.+.|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999863 58999999999999999999999999999999999887753
No 106
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-45 Score=396.71 Aligned_cols=225 Identities=27% Similarity=0.405 Sum_probs=197.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-----~~ 700 (949)
.|+++|++|.|+++.. ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4889999999974210 01469999999999999999999999999999999999999999999999998853 23
Q ss_pred HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
...++.|||+||++ .+++ .|++||+.+.....+...++.++.++++++.++|.+ ...++++.+||||||||++||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999996 4565 699999998765555555556677889999999962 3578999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+.+|+++||||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 58999999999999999999999999999999999988754
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5e-45 Score=382.07 Aligned_cols=208 Identities=28% Similarity=0.466 Sum_probs=187.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHHHh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI 703 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~~~ 703 (949)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999963 469999999999999999999999999999999999999999999999998853 33456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++.+++.+|++||+.+... .++...++.+++++++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhhCccccCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999988643 34444445567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
+|+++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999864 589999999999999999999999999974
No 108
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-45 Score=405.65 Aligned_cols=232 Identities=19% Similarity=0.284 Sum_probs=200.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEcCeecCcc-H
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~----ptsG~I~i~G~di~~~-~ 700 (949)
+|+++||++.|+++.+ .+.||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESA--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCc--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 5899999999975321 2579999999999999999999999999999999999998 4899999999998642 2
Q ss_pred ---HHhh-ccEEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCCCCChhHHH
Q 002236 701 ---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 701 ---~~~r-~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~-~~~~~~~~~~LSGGqKq 772 (949)
.+.| +.|||+||++ .+.+.+|+.+++....+.. +...++.++++.++|+.+||.+ ....++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2222 4799999997 5889999999887655433 4455666788999999999963 12568999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
|++||+||+.+|++||+||||+|||+.+++.++++|++++ .|.|||++|||++++.++||||++|.+|++++.|++++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999863 48999999999999999999999999999999999999
Q ss_pred HHHhcCCcE
Q 002236 851 LKARYGGSY 859 (949)
Q Consensus 851 Lk~~~g~~y 859 (949)
+.+.....|
T Consensus 241 ~~~~p~hpy 249 (326)
T PRK11022 241 IFRAPRHPY 249 (326)
T ss_pred HhhCCCChH
Confidence 987654444
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-45 Score=392.16 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=191.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... +.
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999963 4699999999999999999999999999999999999999999999999988532 24
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+++.+|++||+.+.....+....+..+++.++++.++|. +..++++.+||||||||+++|+||+.+|+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--GAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 6899999999999999999998866555655555567889999999996 47789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEe--CCEEEEEcCHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNPK 849 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~--~G~l~~~Gs~~ 849 (949)
++||||||+|||+.+++.++++|++. + +|+|||++||+++++..+|||+++|+ +|+++..++.+
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999986 4 48999999999999999999999999 59999887754
No 110
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=389.87 Aligned_cols=221 Identities=26% Similarity=0.424 Sum_probs=193.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H-HH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~-~~ 702 (949)
.+++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 36999999999963 5799999999999999999999999999999999999999999999999998642 2 22
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhh-------cCC------C--chhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL-------KNL------K--GPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l-------~g~------~--~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LS 767 (949)
.+..++|+||++.+++.+|++||+.+.... ++. . ..+..+.++++++.+|+. +..++++++||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL--EHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh--hhhhCChhhCC
Confidence 345699999999999999999999975321 111 0 112345688899999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 768 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 768 GGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
||||||++||+||+.+|+++||||||+|||+.+++.++++|.+. ++ |+|||++||+++++..+|||+++|++|+++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999999999986 33 89999999999999999999999999999999
Q ss_pred cCHHHHHH
Q 002236 846 GNPKELKA 853 (949)
Q Consensus 846 Gs~~~Lk~ 853 (949)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99988743
No 111
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=394.46 Aligned_cols=220 Identities=29% Similarity=0.508 Sum_probs=195.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~~ 702 (949)
+|+++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 4789999999963 2469999999999999999999999999999999999999999999999999852 2234
Q ss_pred hhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+++.|||+||++ .++ .+|++||+.+.....+...++..+++.++++.++|. ++.++++++||||||||+++|+||
T Consensus 76 ~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 678899999996 345 469999998754333444455667889999999996 488999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999864 58999999999999999999999999999999999998753
No 112
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=388.57 Aligned_cols=224 Identities=25% Similarity=0.399 Sum_probs=197.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~--p---tsG~I~i~G~di~~- 698 (949)
..|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 46899999999963 469999999999999999999999999999999999986 4 69999999999853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
.....++.+||+||+..+++.+|++||+.+..+..+. ...+.+++++++++.+++.+ .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2345678899999999999999999999875544432 33445667889999999852 124578899999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998667999999999999999999999999999999999998865
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 237 ~ 237 (252)
T PRK14256 237 T 237 (252)
T ss_pred C
Confidence 3
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-44 Score=381.96 Aligned_cols=212 Identities=24% Similarity=0.393 Sum_probs=185.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HH---H
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD---R 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~---~ 702 (949)
|+++|++|.|++.. ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .. .
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 78999999996421 125699999999999999999999999999999999999999999999999998542 11 2
Q ss_pred hh-ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r-~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.+ +.+||+||++.+++.+|++||+.+....++....+..+++.++++.+|+. +..++.+.+||||||||+++|+||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE--HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 33 67999999999999999999999865544444444566788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 843 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~ 843 (949)
.+|+++||||||+|||+.+++.++++|++. + .|+|||++||++++++. |||+++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999986 3 48999999999999976 8999999999975
No 114
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=389.77 Aligned_cols=224 Identities=26% Similarity=0.437 Sum_probs=197.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~--p---tsG~I~i~G~di~~ 698 (949)
+.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|+++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 347999999999973 469999999999999999999999999999999999997 3 69999999999853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
.....++.+||+||++.+++. |++||+.+..+.++. ..++..++++++++.+++.+ .+..++.+.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567889999999998886 999999887655543 23445667888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||++++++.+|||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999999999999999999999999999986
Q ss_pred Hh
Q 002236 853 AR 854 (949)
Q Consensus 853 ~~ 854 (949)
++
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 53
No 115
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=390.16 Aligned_cols=223 Identities=24% Similarity=0.389 Sum_probs=197.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
...|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 357999999999963 469999999999999999999999999999999999986 589999999999853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
+....++++||+||++.+++ +|++||+.+..... +.+.++.+++++++++.+++.+ .+..++.+.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 33456788999999998888 89999998865443 4455556678899999999842 13568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998867899999999999999999999999999999999999886
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
No 116
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.4e-45 Score=388.14 Aligned_cols=201 Identities=30% Similarity=0.522 Sum_probs=181.6
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEc-CCCCCCCCCCH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTG 722 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~p-Q~~~L~~~lTv 722 (949)
++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.+||+| |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 35799999999999999999999999999999999999999999999999987554445677899998 56788889999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHH
Q 002236 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 802 (949)
Q Consensus 723 ~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~ 802 (949)
+|++.+...+++...++..++++++++.+++. +..++++.+||||||||+++|+||+.+|+++||||||+|||+.+++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 99999877766665556667788999999996 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 803 NLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 803 ~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
.++++|++. + +|+|||++||++++++.+||++++|.+|++++.|
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999986 3 3899999999999999999999999999998764
No 117
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=385.78 Aligned_cols=219 Identities=25% Similarity=0.402 Sum_probs=193.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H-HH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~-~~ 702 (949)
.+|+++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 36899999999963 5699999999999999999999999999999999999999999999999988642 2 23
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l-~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++.+||+||++.+++.+|++||+.+..... ...+.++.++++++.+ ++. +..++++.+||||||||+++|+||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH--HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998753222 2233455677788888 475 3678899999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|++++|||||+|||+.+++.+++.|++. ++|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999986 469999999999999999999999999999999999998853
No 118
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-44 Score=384.58 Aligned_cols=215 Identities=28% Similarity=0.460 Sum_probs=189.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H-HHhh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 704 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~-~~~r 704 (949)
|+++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999998642 2 2245
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~-L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
+.+||+||++.+++.+|++||+.+.....+.. ..+.++++++.++ +. ...++++.+||||||||+++|+||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLK--EMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHH--HHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998865544322 2334577777776 44 367999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++++|||||+|||+.+++.++++|++.+ +|+|||++||++++++.+|||+++|++|++++.|+.+++.
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999864 3899999999999999999999999999999999998873
No 119
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=393.49 Aligned_cols=222 Identities=27% Similarity=0.468 Sum_probs=197.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+++++|++|.|++. ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++.. ....+
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 479999999999631 3569999999999999999999999999999999999999999999999999864 34456
Q ss_pred hccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++. .++.+|++||+.+.....+...++.++.++++++.++|. +..++.+.+||||||||++||+||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865554455555667789999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.++++|++.+ + ++|||++||++++++ .|||+++|++|+++..|+++++.+
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999864 4 599999999999997 799999999999999999887754
No 120
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=388.24 Aligned_cols=222 Identities=27% Similarity=0.438 Sum_probs=196.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~-- 698 (949)
.++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999973 4699999999999999999999999999999999999974 79999999998842
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
.....++.+||++|++.+++.+|++||+.+....++. ..++.++.++++++.+++.+ .+..++.+.+||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345678899999999999999999999886655443 33455677889999999841 1356889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe------CCEEEEEcCH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNP 848 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~------~G~l~~~Gs~ 848 (949)
+||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|+++..|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 9999999999999999999999999999999999987667999999999999999999999997 8999999999
Q ss_pred HHHHH
Q 002236 849 KELKA 853 (949)
Q Consensus 849 ~~Lk~ 853 (949)
+++..
T Consensus 238 ~~~~~ 242 (258)
T PRK14241 238 EKIFS 242 (258)
T ss_pred HHHHh
Confidence 98854
No 121
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.8e-44 Score=392.09 Aligned_cols=229 Identities=26% Similarity=0.346 Sum_probs=198.2
Q ss_pred CcEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cH
Q 002236 625 HAIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~---~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~ 700 (949)
.+|+++||+|.|+++.+ ++.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 36999999999963211 113579999999999999999999999999999999999999999999999999864 23
Q ss_pred HHhhccEEEEcCCCC--CCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
...++.+||+||++. +++.+|+.|++.+..+.. +....+..++++++++.++|.+ ...++.+.+||||||||++||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHHhcCchhcCHHHHHHHHHH
Confidence 334568999999974 678889999998865543 3344455677899999999952 367889999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||+.+|+++||||||+|||+.+++.+++.|.++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 9999999999999999999999999999999986 3 389999999999999999999999999999999999988653
No 122
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=386.52 Aligned_cols=223 Identities=26% Similarity=0.418 Sum_probs=196.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~ 698 (949)
..+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357899999999963 5699999999999999999999999999999999999875 89999999999853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
.....++.+||+||++.+++ +|++||+.+.....+. ...+.+++++++++.+++.+ ....++.+.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22356788999999999988 8999999987655554 23345567888999998842 12568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||++++++.+|||+++|++|+++..|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999875
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 235 ~ 235 (251)
T PRK14270 235 L 235 (251)
T ss_pred c
Confidence 3
No 123
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=390.52 Aligned_cols=223 Identities=25% Similarity=0.445 Sum_probs=196.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~ 698 (949)
...|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 347999999999973 5699999999999999999999999999999999999975 89999999999853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~--~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqK 771 (949)
.....++.+||+||++.+++. |++||+.+..+.++. +..+..+++.++++.+++.+ ....++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567889999999988885 999999986555443 23345667899999999952 0245788999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
||++||+||+.+|++|||||||+|||+.+++.+.++|++.++++|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999888
Q ss_pred HH
Q 002236 852 KA 853 (949)
Q Consensus 852 k~ 853 (949)
..
T Consensus 250 ~~ 251 (267)
T PRK14235 250 FT 251 (267)
T ss_pred Hh
Confidence 64
No 124
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=385.37 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=196.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCeecCc-cHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~---ptsG~I~i~G~di~~-~~~ 701 (949)
+++++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5889999999973 569999999999999999999999999999999999974 799999999999864 344
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC--chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK--GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~--~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRLslA 777 (949)
..++.+||+||++.+++ .|++||+.+....++.. ....+++++++++.+++.+ ....++.+.+||||||||+++|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56788999999999997 69999999876555432 2345567889999999952 1246888999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|||+.+|++++|||||+|||+.+++.+.+.|++..+|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999987678999999999999999999999999999999999998864
No 125
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=388.76 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=194.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5899999999963 579999999999999999999999999999999999999999999999998753 334556
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~----l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+.+||+||+..+++.+|++||+.+... ..+...+...++++++++.+++. +..++++.+||||||||++||+||
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHHHHHHH
Confidence 789999999999999999999987421 12222234456788999999996 478999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999999999999998864 5899999999999999999999999999999999988764
No 126
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.3e-44 Score=402.60 Aligned_cols=234 Identities=24% Similarity=0.403 Sum_probs=202.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCcc-
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTD- 699 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~~- 699 (949)
...++++||+|.|+.+.+ ...||+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 10 ~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 347999999999964221 357999999999999999999999999999999999999996 99999999998642
Q ss_pred H---HHhh-ccEEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 002236 700 M---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 771 (949)
Q Consensus 700 ~---~~~r-~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LSGGqK 771 (949)
. .+.| +.|||+||++ .+.+.+|+.+++......+ +...++..+++.++++.++|.+. ...++++.+||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2 2233 4799999997 6889999999997655444 34555667789999999999631 235789999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
||++||+||+.+|++||+||||+|||+.+++.++++|++++ .|.|||++|||++++..+||||++|.+|++++.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999863 3899999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 002236 850 ELKARYGGSY 859 (949)
Q Consensus 850 ~Lk~~~g~~y 859 (949)
++.+.....|
T Consensus 248 ~i~~~p~~py 257 (330)
T PRK09473 248 DVFYQPSHPY 257 (330)
T ss_pred HHHhCCCCHH
Confidence 9987655444
No 127
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=389.03 Aligned_cols=223 Identities=26% Similarity=0.425 Sum_probs=194.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
..+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 457999999999963 569999999999999999999999999999999999865 799999999999853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
.....++.+||+||++.+++. |++||+.+.....+... ...++.+.++++.+++.+ ....++++++|||||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 223457789999999998885 99999987644433222 234566788899998842 02468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999866799999999999999999999999999999999999886
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 252 ~ 252 (268)
T PRK14248 252 T 252 (268)
T ss_pred h
Confidence 5
No 128
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.9e-44 Score=380.72 Aligned_cols=215 Identities=24% Similarity=0.420 Sum_probs=188.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HH--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~-- 701 (949)
.+|+++||+|.|++.. ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4799999999997421 013599999999999999999999999999999999999999999999999988642 21
Q ss_pred -Hh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 702 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 702 -~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
+. ++.+||+||++.+++.+|++||+.+....++....+.++++.++++.+++. +..++++.+||||||||++||+|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHH
Confidence 12 357999999999999999999998765555544455677899999999996 47789999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
|+.+|+++||||||+|||+.+++.++++|++. ++ |+|||++||++++++. |||+++|++|+++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 99999999999999999999999999999986 44 8999999999999865 99999999999875
No 129
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.6e-44 Score=386.97 Aligned_cols=220 Identities=24% Similarity=0.402 Sum_probs=196.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-------
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------- 699 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~------- 699 (949)
|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999963 4699999999999999999999999999999999999999999999999988421
Q ss_pred -------HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 700 -------MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 700 -------~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
....++.+||++|++.+++.+|++||+.+... .++....+.++.+.++++.+++. +..++.+.+||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA--DKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhhcChhhcCHHHH
Confidence 13457889999999999999999999987532 23444455567789999999996 478999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
||++||+||+.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|+++..|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999986 43 899999999999999999999999999999999998
Q ss_pred HHHHh
Q 002236 850 ELKAR 854 (949)
Q Consensus 850 ~Lk~~ 854 (949)
++.+.
T Consensus 233 ~~~~~ 237 (252)
T TIGR03005 233 EIFRQ 237 (252)
T ss_pred HHhcC
Confidence 87543
No 130
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=384.74 Aligned_cols=222 Identities=25% Similarity=0.420 Sum_probs=195.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC---CCC--CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI---TRT--TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl---~~p--tsG~I~i~G~di~~- 698 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 46899999999963 5699999999999999999999999999999999997 455 59999999999864
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
.....++.+||+||++.+++ .|++||+.+..+.++... +..++.++++++.+++.+ ....++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 23456788999999998887 599999987655554332 335667889999999852 124688999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999999865
No 131
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=394.69 Aligned_cols=225 Identities=27% Similarity=0.391 Sum_probs=195.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc------c
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------D 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------~ 699 (949)
.|+++|++|.|+++.+ ..+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5899999999974210 01359999999999999999999999999999999999999999999999998742 2
Q ss_pred HHHhhccEEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 700 MDRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 700 ~~~~r~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
...+++.+||+||++. +++ .|++||+.+.....+...++..++++++++.++|.. +..++++.+||||||||++||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 3456788999999973 454 599999987654444444555567889999999942 478999999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+||+.+|+++||||||+|||+.+++.++++|++. + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999986 3 48999999999999999999999999999999999988753
No 132
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=390.20 Aligned_cols=222 Identities=27% Similarity=0.447 Sum_probs=198.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++|++|.|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ...++
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999854 44567
Q ss_pred hccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++.+||+||++. +++..|+++|+.+.....+...++..++++++++.+++. +..++++.+||||||||++||+||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865555555555667888999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.+++.|++.+ + |+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999986 99999999999999999988754
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=377.81 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHcc
Confidence 468999999963 22 2999999999999999999999999999999999999999999999986432 23578
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+.........+..+++++++++.++|. +..++++.+||||||||+++|+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA--GLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998754321111234456789999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+|||+++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999863 3899999999999999999999999999998654
No 134
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=389.62 Aligned_cols=222 Identities=24% Similarity=0.390 Sum_probs=195.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
..+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 357999999999963 569999999999999999999999999999999999987 699999999998742
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
+....++.+||+||++.+++. |++||+.+....++.. ...++++.++++.+++.. .+..++++.+||||||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 344567889999999999884 9999999876655443 234567788899988741 135788999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC-----------CEE
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-----------GSL 842 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~-----------G~l 842 (949)
++||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||++++++.+|||+++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 999999999999999999999999999999999999887789999999999999999999999996 678
Q ss_pred EEEcCHHHHHH
Q 002236 843 QCIGNPKELKA 853 (949)
Q Consensus 843 ~~~Gs~~~Lk~ 853 (949)
+..|+++++..
T Consensus 243 ~~~~~~~~~~~ 253 (269)
T PRK14259 243 VEFNETKKIFN 253 (269)
T ss_pred EEeCCHHHHHh
Confidence 99999998854
No 135
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.2e-44 Score=389.54 Aligned_cols=227 Identities=22% Similarity=0.364 Sum_probs=196.4
Q ss_pred cEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H-
Q 002236 626 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M- 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~---~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~- 700 (949)
+|+++||+|.|++..+ ..++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 5889999999963100 0135799999999999999999999999999999999999999999999999998642 1
Q ss_pred --HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 701 --DRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 701 --~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
..+++.|||+||++ .+++.+|++||+.+... ..+......++++.++++.+++.+ ...++++.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-EDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhhCChhhCCHHHHHHHH
Confidence 23567899999996 46788999999976543 223444455677899999999952 3678999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|+||+.+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999998864
No 136
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=389.42 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=195.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.
T Consensus 10 ~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 46999999999963 579999999999999999999999999999999999999999999999998853 34456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
++.+||+||+..+++.+|++||+.+... ..+ ......+++++++++.+++. +..++++++||||||||+++|+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHHHHHHH
Confidence 7789999999888899999999987432 111 11233456789999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|+.+|+++||||||+|||+.+++.++++|++. ++ |+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999986 33 899999999999999999999999999999999988764
No 137
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-44 Score=382.08 Aligned_cols=219 Identities=35% Similarity=0.557 Sum_probs=198.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|.++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcc
Confidence 468999999973 57999999999999999999999999999999999999999999999999886432 23678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+....++......+++++++++.+++. +..++.+.+||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998866666555555667889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|+.+++...
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999864 3 89999999999999999999999999999999998888653
No 138
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=392.97 Aligned_cols=222 Identities=25% Similarity=0.451 Sum_probs=198.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCeecCc-cH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRT-DM 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts---G~I~i~G~di~~-~~ 700 (949)
.+|+++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++ |+|+++|.++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 479999999999642 2469999999999999999999999999999999999999998 899999999864 33
Q ss_pred HHhhccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
...++++||+||++. +++.+|++||+.+..+..+.+.++..++++++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML--DYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHH
Confidence 456778999999974 677789999998765555666666677899999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|+.+|+++||||||+|||+.+++.+++.|++. + .|+|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999986 3 3899999999999996 799999999999999999988754
No 139
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-44 Score=382.01 Aligned_cols=217 Identities=26% Similarity=0.472 Sum_probs=195.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|+++.|++ + +++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999962 2 8999999999999999999999999999999999999999999999999864222 3678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+.....+....+.++.+.++++.++|. +..++++.+||||||||++||+||+.+|++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID--HLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998765555555555667788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||||+|||+.+++.+|+.|++.. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999853 3 8999999999999999999999999999999999888764
No 140
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.2e-44 Score=379.80 Aligned_cols=205 Identities=27% Similarity=0.493 Sum_probs=179.4
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEE
Q 002236 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (949)
Q Consensus 629 v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG 708 (949)
++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..++.+|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIG 71 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheE
Confidence 6899999963 46999999999999999999999999999999999999999999999998764 3567899
Q ss_pred EEcCCCCCC--CCCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 709 VCPQEDLLW--ETLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 709 ~~pQ~~~L~--~~lTv~E~L~~~~~l~g----~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
|+||++.+. ..+|++||+.+...... ...+..+++++++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~ 149 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALVQ 149 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998763 23799999987543211 12234566789999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+|+++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++| +++.|
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999864 6899999999999999999999999886 55543
No 141
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-42 Score=448.27 Aligned_cols=217 Identities=26% Similarity=0.404 Sum_probs=193.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCeecCccHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~---ptsG~I~i~G~di~~~~~ 701 (949)
..++++||++.|+.++ .++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 3589999999996422 24679999999999999999999999999999999999998 799999999999853
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC----CCChhHHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG----KYSGGMKRRL 774 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~----~LSGGqKqRL 774 (949)
..|+.+|||+|++.+++.+||+|||.+.++++. .+.++.+++++++++.++|. +.+|+.++ +|||||||||
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME--SYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh--hhCCCeeCCCCCCCCHHHhhHH
Confidence 467889999999999999999999999887763 33445567899999999997 47888887 7999999999
Q ss_pred HHHHHHcCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHH-HHHhcCEEEEEeCC-EEEEEcCH
Q 002236 775 SVAISLIGNPK-VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE-AEALCDRLGIFVDG-SLQCIGNP 848 (949)
Q Consensus 775 slA~ALi~~P~-vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~mee-ae~l~drI~Im~~G-~l~~~Gs~ 848 (949)
+||+||+.+|+ ||+|||||+|||+.+++.+++.|+++ ++|+|||+|||+++. +.+.|||+++|++| +++..|++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99999999997 99999999999999999999999986 579999999999986 45789999999997 99999997
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.8e-44 Score=386.81 Aligned_cols=218 Identities=25% Similarity=0.427 Sum_probs=193.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 678999999963 579999999999999999999999999999999999999999999999999864 3345567
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhh-h---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGR-L---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~-l---~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.+||+||++.+++.+|++||+.+... . .+....+..+++.++++.+++. +..++++.+||||||||+++|+||+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 89999999888888999999987531 1 1122234456788999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
.+|+++||||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|+++..|+.+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999864 5899999999999999999999999999999999988763
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=384.48 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=192.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5899999999963 469999999999999999999999999999999999999999999999999854 334567
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+||++.+++ .|++||+.+....++ ...+++.++++.++|.+ +..++.+.+||||||||+++|+||+.+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999998887 699999987543332 12456788999999952 3678999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+++||||||+|||+.+++.+++.|++. + +|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999999986 3 48999999999999999999999999999999999998864
No 144
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.8e-44 Score=382.75 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=190.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCeecCcc-HHH-
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MDR- 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~ptsG~I~i~G~di~~~-~~~- 702 (949)
|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999963 56999999999999999999999999999999999995 79999999999988642 222
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-------CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-------LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRL 774 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-------~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~-~LSGGqKqRL 774 (949)
.+..++|+||++.+++.+|++|++.+...... ....+..+++.++++.++|.+ ...++.+. +||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHHHHH
Confidence 34569999999999999999999987543221 122334567899999999962 35678887 5999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEEcCHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l-~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
++|+||+.+|+++||||||+|||+.+++.++++|++.+ +|+|||++||++++++.+ |||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999999864 589999999999999998 8999999999999999998765
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 4
No 145
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=390.55 Aligned_cols=223 Identities=24% Similarity=0.400 Sum_probs=198.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+|+++|+++.|++. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 68999999999742 12469999999999999999999999999999999999999999999999999864 344567
Q ss_pred ccEEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 705 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 705 ~~iG~~pQ~~~-L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
+.+||+||++. ++...|+.||+.+.....+...++..++++++++.++|. ++.++++.+||||||||++||+||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 88999999974 577789999998765544555555667889999999996 478999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999864 3 899999999999997 5999999999999999999988654
No 146
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-44 Score=383.40 Aligned_cols=221 Identities=26% Similarity=0.469 Sum_probs=195.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~-- 698 (949)
.|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5889999999963 4699999999999999999999999999999999999863 79999999999863
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
.....++.+||+||++.+++ +|++||+.+....++.. .++.++.++++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23456788999999998888 89999999876555542 3345677888999998742 1246889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||||+.+|++++|||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999988754
No 147
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-44 Score=400.32 Aligned_cols=230 Identities=19% Similarity=0.272 Sum_probs=195.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEcCeecCc-cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRT-DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~----ptsG~I~i~G~di~~-~~ 700 (949)
+|+++||+|.|+.++ +.+.||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSD--GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCC--CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999996422 13579999999999999999999999999999999999997 689999999999864 22
Q ss_pred H---Hh-hccEEEEcCCCC--CCCCCCHHHHHHHHhhh---cCC---CchhHHHHHHHHHHHcCCCCC-CcccccCCCCC
Q 002236 701 D---RI-YTSMGVCPQEDL--LWETLTGREHLLFYGRL---KNL---KGPALTQAVEESLKSVNLFHG-GVADKQAGKYS 767 (949)
Q Consensus 701 ~---~~-r~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l---~g~---~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LS 767 (949)
. +. ++.|||+||++. +.+.+|+.+++...... .+. ...+.++++.++|+.+||.+. ...++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 2 22 357999999975 67889999999753221 111 113446788999999999631 24689999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 768 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 768 GGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
||||||++||+||+.+|++|||||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|.+|++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 389999999999999999999999999999999
Q ss_pred cCHHHHHHhcCC
Q 002236 846 GNPKELKARYGG 857 (949)
Q Consensus 846 Gs~~~Lk~~~g~ 857 (949)
|+++++.+....
T Consensus 241 g~~~~i~~~p~~ 252 (330)
T PRK15093 241 APSKELVTTPHH 252 (330)
T ss_pred CCHHHHHhCCCC
Confidence 999998765433
No 148
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-45 Score=382.57 Aligned_cols=302 Identities=25% Similarity=0.393 Sum_probs=244.2
Q ss_pred cEEEEeEEEEcCCCC---------------CCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 002236 626 AIISDNLRKIYPGRD---------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~---------------~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~ 690 (949)
+|.++||+|.|...- ......||+||||+|++|+++|++|+||||||||+|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 567778888775321 01135699999999999999999999999999999999999999999999
Q ss_pred EcCeecCccHHHhhccEEEEc-CCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 691 VQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 691 i~G~di~~~~~~~r~~iG~~p-Q~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
|+|++...+.++.-+++|+++ |.-.+|.++-+.|.+..-..++.++.++..++.+.+.+.++|+ +..+.+++.||-|
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~--~~lk~~vr~LSlG 160 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE--GFLKWPVRKLSLG 160 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hhhhhhhhhccch
Confidence 999999877777778888865 6678888899999999988999999999999999999999997 5899999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 770 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 770 qKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
||+|..+|.||+++|+||+|||||-|||..++..+.+.|++. +++.||++|||+|+.++++||||+.|+.|+++.+|+
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 999999999999999999999999999999999999999986 458999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEeCCCc-HHHHHHHHHhcCCCceeEEEeccEEEEEecCCcccHHHHHHHHHHHhcCCcEeEEEe
Q 002236 848 PKELKARYGGSYVFTMTTSADH-EEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGL 926 (949)
Q Consensus 848 ~~~Lk~~~g~~y~l~i~~~~~~-~~~v~~~v~~~~p~a~~~~~~~~~~~~~lp~~~~~~~~lf~~le~~~~~~~I~~~~v 926 (949)
..+|+++||..-.+.+...... ...+.. .++..... +....+..+. .+.-..+.+...++.+.|..+
T Consensus 241 l~~l~~~f~~~k~~~~el~~~~~~~~l~~-----l~d~~~~~--~~~~~~~~~r-----~~~~~~i~~~~~e~~v~Dl~v 308 (325)
T COG4586 241 LAQLQEQFGPYKEFSVELKQAKSLSQLAL-----LGDVTIEE--GLNIKNDVSR-----EESADIIAKLLAEFEVRDLTV 308 (325)
T ss_pred HHHHHHHhCCceEEEEEEcccccchhccc-----cchhhhhc--ccchhhcchh-----HHHHHHHHHHHHhhhhccCCC
Confidence 9999999999877766654111 110000 00110000 1112222221 122223333345678889999
Q ss_pred ccCCHHHHHHHhhhc
Q 002236 927 ADTTLEDVFIKVARH 941 (949)
Q Consensus 927 s~tTLEdVFl~~~~~ 941 (949)
.++..|++--++.++
T Consensus 309 ~d~~ie~vi~r~y~~ 323 (325)
T COG4586 309 EDPEIEDVIRRIYQK 323 (325)
T ss_pred CCCcHHHHHHHHHhc
Confidence 999999998877654
No 149
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-44 Score=382.85 Aligned_cols=222 Identities=28% Similarity=0.461 Sum_probs=194.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CC---CcceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RT---TSGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~p---tsG~I~i~G~di~~-- 698 (949)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+. +| ++|+|+++|+++..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 6899999999963 46999999999999999999999999999999999995 46 59999999998853
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
.....++.+||+||++.+++ +|++||+.+.....+... ...++++.++++.+++.+ .+..++.+.+||||||||+
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH
Confidence 23345778999999999887 799999998755555433 334567888999998742 1246889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++|+||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999876679999999999999999999999999999999999988653
No 150
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-44 Score=382.77 Aligned_cols=222 Identities=26% Similarity=0.464 Sum_probs=195.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~-- 698 (949)
+|+++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999963 4699999999999999999999999999999999999984 89999999998853
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqRL 774 (949)
.....++.+||+||++.+++ +|++||+.+.....+.. ....++.++++++.+++.+. ...++.+.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 22345778999999999888 89999999865554432 23455678889999998520 246889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++|+||+.+|++++|||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999876789999999999999999999999999999999999988653
No 151
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-44 Score=387.84 Aligned_cols=221 Identities=20% Similarity=0.352 Sum_probs=195.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999973 569999999999999999999999999999999999999999999999998854 33455
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
++.+||+||++.+++.+|++||+.+... ..+ ...+..+++++++++.++|. +..++.+.+||||||||++||+|
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT--HLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCChHHHHHHHHHHH
Confidence 6789999999999999999999987421 111 11233456788999999996 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999986 3 38999999999999999999999999999999999988753
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-44 Score=380.05 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=190.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+++++||+|.|++ +. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ~l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRR 71 (232)
T ss_pred CeEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhc
Confidence 4789999999963 22 3899999999999999999999999999999999999999999999886432 2356
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+++.+|++||+.+.........+..++++.++++.+|+. +..++++.+||||||||+++|+|++.+|+
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE--DLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH--HHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998653221111234466789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||||||+|||+.+++.++++|++. + +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999986 4 38999999999999999999999999999999999988764
No 153
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6e-44 Score=381.20 Aligned_cols=218 Identities=28% Similarity=0.487 Sum_probs=197.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcC
Confidence 468999999973 4699999999999999999999999999999999999999999999999988642 234678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+....++.......+.++++++.+++. ++.++.+++||||||||+++|+||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE--GLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998766555544445567789999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||||+|||+.+++.+++.|++.+ + |+|||++||++++++.+|||+++|++|++++.|+.+++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999864 3 8999999999999999999999999999999999998864
No 154
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-44 Score=382.42 Aligned_cols=222 Identities=26% Similarity=0.460 Sum_probs=195.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~- 698 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999963 569999999999999999999999999999999999997 489999999998853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqR 773 (949)
....+++.+||++|++.+++ .|++||+.+.....+... +..+++++++++.+++... ...++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 23456778999999999886 799999987655444432 3345678889999998410 24688999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987668999999999999999999999999999999999998854
No 155
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.6e-44 Score=385.72 Aligned_cols=219 Identities=23% Similarity=0.380 Sum_probs=193.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCc---
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT--- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~--- 698 (949)
.+|+++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47999999999963 57999999999999999999999999999999999999986 4999999998853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l--------~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LS 767 (949)
.....++.+||+||++.+++.+|++||+.+.... .+...++.+++++++++.+++. +..++.+.+||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS 154 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV--HFAHQRVSTLS 154 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH--HHHhCCccccC
Confidence 2245577899999999999999999999864321 1111234456789999999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 768 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 768 GGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
||||||++|||||+.+|++|||||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+|||+++|++|++++.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999863 489999999999999999999999999999999
Q ss_pred cCHHHH
Q 002236 846 GNPKEL 851 (949)
Q Consensus 846 Gs~~~L 851 (949)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 998875
No 156
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=384.78 Aligned_cols=224 Identities=25% Similarity=0.405 Sum_probs=197.3
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecC
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~ 697 (949)
...+|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3457999999999963 579999999999999999999999999999999999996 58999999999985
Q ss_pred c---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 002236 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (949)
Q Consensus 698 ~---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqK 771 (949)
. ....+++.+||+||++.+++ .|++||+.+..+..+. ...+.++++.++++.++|.+ .+..++.+.+||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 3 23456788999999998887 5999999886544443 23345677889999999852 1357889999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
||++|||||+.+|++++|||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887789999999999999999999999999999999999988
Q ss_pred HH
Q 002236 852 KA 853 (949)
Q Consensus 852 k~ 853 (949)
..
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 54
No 157
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=380.84 Aligned_cols=223 Identities=24% Similarity=0.407 Sum_probs=196.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-----sG~I~i~G~di~~- 698 (949)
..|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46899999999963 46999999999999999999999999999999999999997 6999999998853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
.....++.+||+||++.+++. |++||+.+....++... ++.++.++++++.+++.+ .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 234567889999999999885 99999998665544332 334567788888888742 135789999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987678999999999999999999999999999999999998865
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 236 ~ 236 (251)
T PRK14249 236 R 236 (251)
T ss_pred C
Confidence 4
No 158
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-44 Score=402.06 Aligned_cols=213 Identities=23% Similarity=0.397 Sum_probs=190.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----H
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~ 700 (949)
||++ ||+|.|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 4677 99999973 22 3 89999999999999999999999999999999999999999999987531 2
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
...++++||+||+..+|+.+|++||+.+..+ ...+++++++++.++|. +..++++.+||||||||++|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999987532 12346789999999996 478999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999986 34 899999999999999999999999999999999999987653
No 159
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=382.32 Aligned_cols=223 Identities=25% Similarity=0.416 Sum_probs=196.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~--p---tsG~I~i~G~di~~- 698 (949)
.+|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 5 ~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 47999999999963 569999999999999999999999999999999999976 3 58999999999864
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
...+.++.+||+||++.+++. |++||+.+..+.++.. ....++.+.++++.+++.+ ....++.+.+||||||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred ccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 234567889999999999885 9999999876655432 2344567888999998842 124688999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+++|+||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||++++++.+|||+++|++|++++.|+++++..
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
No 160
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-44 Score=370.99 Aligned_cols=221 Identities=29% Similarity=0.458 Sum_probs=196.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--cHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~~~~ 702 (949)
.+++++||+-.|++ .+||++|||++++|||++|+|+||||||||+|.|+|+.+|.+|+|.++|+||+. ..+.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47899999999984 689999999999999999999999999999999999999999999999999975 3456
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~-L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
+|..|+||||...+|+.|||+|||.+.+..+.- ++..+..++++.+.+- |. +.+++++++|||||||.|+|||||+
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lk--er~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLK--ERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHH--HHhcCcccCCChHHHHHHHHHHHHh
Confidence 788999999999999999999999986544321 1112222666666664 33 5789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
.+|++++|||||.||-|.-.+++.+.|++++ + |.||+++.++...|.+++||.++|++|+++..|+.++|.+.
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999975 4 78999999999999999999999999999999999998754
No 161
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1e-43 Score=375.58 Aligned_cols=209 Identities=36% Similarity=0.613 Sum_probs=188.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... .++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---cccc
Confidence 468999999963 5699999999999999999999999999999999999999999999999987532 1357
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.++....+.. ++++.++++.+++. +..++.+.+||||||||+++|+|++.+|++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLT--NTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCc--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876655432 34678899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
++|||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|++++.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999864 58999999999999999999999999999999998753
No 162
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=380.47 Aligned_cols=221 Identities=25% Similarity=0.443 Sum_probs=194.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~-- 698 (949)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 6899999999973 5699999999999999999999999999999999999986 59999999998842
Q ss_pred cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHHH
Q 002236 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 699 ~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqRLs 775 (949)
....+++.+||+||++.+++ .|++||+.+.....+.. .+..++++.++++.+++.+. +..++++.+||||||||++
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34566788999999999997 89999998765444432 23445678888999987421 2567889999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999998667999999999999999999999999999999999988753
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.4e-44 Score=373.44 Aligned_cols=210 Identities=22% Similarity=0.402 Sum_probs=185.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|++|.|++ +++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-Chhccc
Confidence 368999999952 46799999999999999999999999999999999999999999999998642 235678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.+..........+.+++++++++.+++. +..++.+.+||||||||++||+||+.+|++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA--DYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH--HHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643321111223456788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
++|||||+|||+.+++.++++|++. ++ |+|||++||+++++..+|||+++|++|++++.|.
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999986 33 8999999999999999999999999999998874
No 164
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-44 Score=384.64 Aligned_cols=207 Identities=23% Similarity=0.373 Sum_probs=187.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~ 80 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAR 80 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hhh
Confidence 46999999999973 46999999999999999999999999999999999999999999999998753 456
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+||++.+++.+|++||+.+.. + ...++++.++++.++|. +..++++.+||||||||++||+||+.+|
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~--~----~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGL--K----GQWRDAALQALAAVGLA--DRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcc--c----chHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998742 1 12346788999999996 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
+++||||||+|||+.+++.++++|+++ + .|+|||++||++++++.+|||+++|++|+++..|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999885 4 4899999999999999999999999999999988764
No 165
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=379.68 Aligned_cols=222 Identities=27% Similarity=0.433 Sum_probs=194.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-----sG~I~i~G~di~~-- 698 (949)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++|+ +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6889999999963 57999999999999999999999999999999999999875 8999999999853
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
.....++.+||+||++.+++.+|++||+.+.....+.. .++..+.++++++.+++.+ .+..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23456778999999999999999999998765443332 2334566777788887631 1246888999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|+||+.+|++++|||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987678999999999999999999999999999999999998865
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-44 Score=373.37 Aligned_cols=204 Identities=30% Similarity=0.466 Sum_probs=181.0
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----cHHHhh
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMDRIY 704 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-----~~~~~r 704 (949)
-||+|+|++ +.+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 499999974 334 99999999 9999999999999999999999999999999999998753 123456
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+||++.+++.+|++||+.+..... .....++++.++++.+++. +..++++.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLD--HLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCH--hHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998764322 2233456788999999996 4689999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
++++|||||+|||+.+++.++++|++. ++ |+|||++||++++++.+|||+++|++|++++.|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999986 44 899999999999999999999999999998765
No 167
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-43 Score=400.82 Aligned_cols=213 Identities=24% Similarity=0.404 Sum_probs=190.2
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----HHHhhc
Q 002236 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYT 705 (949)
Q Consensus 631 nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~~~~r~ 705 (949)
||+|.|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999963 33 4 99999999999999999999999999999999999999999999998532 224567
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+|+.+|++||+.+..+.. ...+.+++++++++.++|. ++.++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIG--HLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998864422 2334456789999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++..+.
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999986 34 899999999999999999999999999999999999987543
No 168
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2e-43 Score=381.60 Aligned_cols=222 Identities=23% Similarity=0.360 Sum_probs=192.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee-----cCcc
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRTD 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d-----i~~~ 699 (949)
.+++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 46999999999963 469999999999999999999999999999999999999999999999998 6532
Q ss_pred -HHH----hhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 700 -MDR----IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 700 -~~~----~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
... .++.+||+||++ .+++.+|++||+.+.....+. ...+.++++.++++.+++.+ ...++.+.+||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-ARIDDLPTTFSGGMQ 157 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-hHHhCCCccCCHHHH
Confidence 222 356799999997 467788999999764322221 22345677889999999952 367899999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
||+++||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |.|||++||++++++.+|||+++|++|+++..|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 33 899999999999999999999999999999999999
Q ss_pred HHHH
Q 002236 850 ELKA 853 (949)
Q Consensus 850 ~Lk~ 853 (949)
++..
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 8864
No 169
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=383.25 Aligned_cols=223 Identities=26% Similarity=0.417 Sum_probs=196.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
..+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 347999999999963 469999999999999999999999999999999999988 489999999999853
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
.....++.+||+||++.+++. |++||+.+.....+.. ....+++++++++.+++.+ .+..++.+.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 234567899999999999986 9999998765555432 2334567888999999852 12568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998875
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 256 ~ 256 (272)
T PRK14236 256 T 256 (272)
T ss_pred c
Confidence 4
No 170
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=380.54 Aligned_cols=222 Identities=27% Similarity=0.427 Sum_probs=194.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
..++++|++|.|++ +.+++|+||++++||++||+|+||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 36899999999963 4699999999999999999999999999999999999985 58999999998853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
....+++.+||+||++.+++ +|++||+.+....++ .+..+..+.++++++.+++.+ ....++.+.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456778999999999988 899999987654443 233445567888999998842 135788999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe-----CCEEEEEcCH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-----DGSLQCIGNP 848 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~-----~G~l~~~Gs~ 848 (949)
++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|+++..|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999997667999999999999999999999998 5999999999
Q ss_pred HHHHH
Q 002236 849 KELKA 853 (949)
Q Consensus 849 ~~Lk~ 853 (949)
+++.+
T Consensus 239 ~~~~~ 243 (259)
T PRK14260 239 TQIFS 243 (259)
T ss_pred HHHhc
Confidence 99854
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=376.04 Aligned_cols=220 Identities=24% Similarity=0.446 Sum_probs=188.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
|+++|++|.|+++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999742 2369999999999999999999999999999999999999999999999998754 3445678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.+||+||++.+++ .|++||+.+..... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||+
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcc--eeeccCCCcCCHHHHHHHHHHH
Confidence 8999999998887 69999998754321 1112111 244556665 564 3678889999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||++++++. |||+++|++|+++..|+++++..+++
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 999999999999999999999999999999988779999999999999986 99999999999999999999877654
No 172
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-43 Score=378.11 Aligned_cols=219 Identities=23% Similarity=0.422 Sum_probs=185.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
|+++|+++.|++. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999632 2569999999999999999999999999999999999999999999999998854 3445678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.+||+||++.+++ .|++||+.+... +.......+ .+.++++.+ ++. ...++++.+|||||||||++||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999998876 699999987432 111111111 223445555 443 3567889999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
||+.+|+++||||||+|||+.+++.+++.|++..+|+|||++||++++++ .|||+++|++|+++..|+++++.++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999998767999999999999996 59999999999999999999987653
No 173
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=378.42 Aligned_cols=221 Identities=27% Similarity=0.446 Sum_probs=192.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc---
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT--- 698 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~--- 698 (949)
-+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 468999999963 579999999999999999999999999999999999986 579999999998753
Q ss_pred cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC--chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK--GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 ~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~--~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
....+++.+||+||++.+++. |++||+.+....++.. ..+.++.+.++++.+++.+ ....++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 223467889999999988886 9999998765444432 2345567889999999952 1145788999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++|+||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999999877789999999999999999999999999999999999888643
No 174
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-43 Score=382.34 Aligned_cols=223 Identities=24% Similarity=0.433 Sum_probs=193.7
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
..+++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 347999999999973 469999999999999999999999999999999999997 699999999998852
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
.....++.+||+||++.+++. |++||+.+..+.++... +..++.+.++++.+++.+ ....++++.+|||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 234567889999999998874 99999998655444322 233456777888775421 12568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999999885
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
+
T Consensus 255 ~ 255 (271)
T PRK14238 255 S 255 (271)
T ss_pred c
Confidence 4
No 175
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=384.64 Aligned_cols=222 Identities=22% Similarity=0.449 Sum_probs=195.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
..+|+++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 347999999999963 569999999999999999999999999999999999987 699999999998753
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
.....++.+||+||++.+++. |++||+.+....++.+. ..+++++++++.+++.+ .+..++++.+||||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 234567889999999988885 99999998766555432 45677899999999852 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEE-EEeCCEEEEEcCHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG-IFVDGSLQCIGNPKELK 852 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~-Im~~G~l~~~Gs~~~Lk 852 (949)
++||+||+.+|+||||||||+|||+.+++.++++|++.++++|||++||+++++..+|||++ +|++|+++..|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999997666899999999999999999975 57999999999998875
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 4
No 176
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-43 Score=385.04 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=195.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
...|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 347999999999963 469999999999999999999999999999999999864 499999999998753
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
....+++.+||+||++.+++. |++||+.+....++.. ....++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 223467889999999998885 9999999865554443 2334567888899998741 13568899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred Hh
Q 002236 853 AR 854 (949)
Q Consensus 853 ~~ 854 (949)
++
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
No 177
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-43 Score=375.30 Aligned_cols=223 Identities=27% Similarity=0.463 Sum_probs=193.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~--p---tsG~I~i~G~di~~- 698 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 46899999999973 569999999999999999999999999999999999975 5 59999999998853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqR 773 (949)
+....++.+||+||++.+++ .|++||+.+....++... +..++++.+.++.+++.. ....++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23456788999999999888 699999998655554332 233456778888888731 125688999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++||+||+.+|+++||||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999988765
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 237 ~ 237 (252)
T PRK14255 237 N 237 (252)
T ss_pred C
Confidence 3
No 178
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=415.50 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=194.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H-HH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~-~~ 702 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . ..
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 36999999999963 5699999999999999999999999999999999999999999999999998542 2 22
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~----g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.++.+||+||++.+++.+|++||+.+....+ ..+.++.+++++++++.++|. +..++++++||||||||++||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHH
Confidence 3568999999999999999999998854332 122344556789999999997 3689999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999986 4589999999999999999999999999999999987654
No 179
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=379.56 Aligned_cols=221 Identities=24% Similarity=0.404 Sum_probs=193.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~- 698 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 9 ~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 46999999999963 469999999999999999999999999999999999986 489999999998842
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
.....++++||++|++.+++. |++||+.+....++.. .+.+++++++++.+++.+ .+..++.+.+||||||||+
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 334567889999999988884 9999998865544432 234466777888888742 1246889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe---------CCEEEEE
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQCI 845 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~---------~G~l~~~ 845 (949)
+|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|+++..
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999999999999999998 8999999
Q ss_pred cCHHHHHH
Q 002236 846 GNPKELKA 853 (949)
Q Consensus 846 Gs~~~Lk~ 853 (949)
|+++++.+
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 99999865
No 180
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-43 Score=376.87 Aligned_cols=224 Identities=23% Similarity=0.404 Sum_probs=196.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC------eecCc
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------LDIRT 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G------~di~~ 698 (949)
+++.++|++|+|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++..
T Consensus 9 ~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 9 DVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc
Confidence 47999999999974 5799999999999999999999999999999999999999997777666 44432
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
...+.++.+||+||++.+++.+|++||+.+....++.. ..+..+++.++++.+++.+ .+..++.+..||||||||+
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 33456788999999999999999999999875544432 3455577899999999952 0246889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||+||+.+|++++|||||+|||+.+++.+++.|.++++++|||++||+++++..+|||+++|++|+++..|+++++.++
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999877789999999999999999999999999999999999988653
No 181
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-43 Score=371.56 Aligned_cols=220 Identities=22% Similarity=0.431 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 3789999999963 2469999999999999999999999999999999999999999999999998864 344567
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
+.+||+||++.+++. |++||+.++.... ...+..+ .+++.++.+ ++. ...++.+.+||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCccccc--CHhhcCCCcCCHHHHHHHHHH
Confidence 889999999988886 9999998763211 1111111 122333333 343 245677899999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
+||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. |||+++|++|+++..|+.+++.+++|
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 9999999999999999999999999999999987679999999999999975 99999999999999999988876653
No 182
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=379.54 Aligned_cols=223 Identities=24% Similarity=0.415 Sum_probs=195.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
.+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 36899999999973 5799999999999999999999999999999999999986 79999999998864
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-~~~~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqRL 774 (949)
....+++.+||+||++.+++ +|++||+.+.....+ .+..+.++.+.++++.+++.+. +..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 23456788999999999888 799999987643332 2334455667888999998521 135788999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+++||||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999876678999999999999999999999999999999999998653
No 183
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=9.1e-43 Score=375.82 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=190.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCeecCccHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p----tsG~I~i~G~di~~~~~ 701 (949)
+|+++|++|.|+ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++.. ..
T Consensus 4 ~l~~~~l~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQAA-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEec-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 689999999993 3599999999999999999999999999999999999999 99999999999863 22
Q ss_pred HhhccEEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHH
Q 002236 702 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LSGGqKqRLslA~ 778 (949)
..++.+||+||++. +.+.+|+.+++.+..+..+.. ..++++.++++.++|.+. ...++.+.+||||||||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 456689999987755444432 234678999999999631 1468999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||+.+|+++||||||+|||+.+++.+++.|++. + .|+|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999999985 4 389999999999999999999999999999999999988653
No 184
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-43 Score=414.18 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=195.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCeecCccH--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDM-- 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p--tsG~I~i~G~di~~~~-- 700 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|.++....
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 46999999999963 5699999999999999999999999999999999999996 8999999999986432
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc--C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~--g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
...++.+||+||++.+++.+|++||+.+....+ + .+.++..++++++++.+++. +..++++++||||||||++||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 234578999999999999999999998865432 2 23344567789999999996 478999999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999986 4689999999999999999999999999999999987754
No 185
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=376.04 Aligned_cols=221 Identities=23% Similarity=0.403 Sum_probs=194.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-----sG~I~i~G~di~~-- 698 (949)
.|+++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 6899999999963 46999999999999999999999999999999999999996 8999999998742
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
....+++.+||+||+..+++ +|++||+.+.....+. +..+..+++.++++.+++.+ ....++.+.+||||||||+
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred cchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 23456788999999998888 8999999886555443 33344567889999999842 1246889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeC-----CEEEEEcC
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD-----GSLQCIGN 847 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~-----G~l~~~Gs 847 (949)
++|+||+.+|+++||||||+|||+.+++.+++.|++. + +|+|||++||+++++..+|||+++|++ |+++..|+
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 9999999999999999999999999999999999985 3 589999999999999999999999999 99999999
Q ss_pred HHHHHH
Q 002236 848 PKELKA 853 (949)
Q Consensus 848 ~~~Lk~ 853 (949)
++++..
T Consensus 240 ~~~~~~ 245 (261)
T PRK14258 240 TKKIFN 245 (261)
T ss_pred HHHHHh
Confidence 999865
No 186
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.9e-43 Score=365.96 Aligned_cols=200 Identities=25% Similarity=0.412 Sum_probs=178.3
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--c---HHHh
Q 002236 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--D---MDRI 703 (949)
Q Consensus 629 v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~---~~~~ 703 (949)
++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4789999963 569999999999999999999999999999999999999999999999998642 1 2235
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||++|++.+++.+|++||+.+.....+....+..++++++++.+++. +..++++.+||||||||+++|+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN--LKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999876555555555677889999999996 478999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im 837 (949)
|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++ +|||+++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999986 45899999999999875 79999875
No 187
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=376.09 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=194.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
..+.++++++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 7 ~~~~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYGN------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeCC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 46899999999963 5799999999999999999999999999999999999987 79999999999853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~--~~~~~~~~~LSGGqKqRL 774 (949)
....+++.+||+||++.++ .+|++||+.+.....+.. .+..+.++++++.+++.+. ...++++++||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2235677899999999888 589999999876554432 3445678999999998531 134678899999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe--------CCEEEEEc
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV--------DGSLQCIG 846 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~--------~G~l~~~G 846 (949)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|+++..|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998778999999999999999999999996 89999999
Q ss_pred CHHHHHH
Q 002236 847 NPKELKA 853 (949)
Q Consensus 847 s~~~Lk~ 853 (949)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9998865
No 188
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.7e-43 Score=369.76 Aligned_cols=215 Identities=28% Similarity=0.431 Sum_probs=187.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCeecCccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~---ptsG~I~i~G~di~~~~~~ 702 (949)
.+.++|++++|++.+ ..+.+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HH
Confidence 467899999997531 13679999999999999999999999999999999999999 999999999998753 35
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHH-HHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEE-SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~---~~~~~~~~v~~-~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.++.+||+||++.+++.+|++||+.+.....+. ......+.+++ .++.+++. ...++.+++||||||||+++|+
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT--RIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch--hhhcccccCcCHHHHHHHHHHH
Confidence 678899999999999999999999986554321 11222334555 89999996 4778999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEEc
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~m-eeae~l~drI~Im~~G~l~~~G 846 (949)
||+.+|+++||||||+|||+.+++.++++|++. ++|+|||++||++ +++..+|||+++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999986 4589999999999 6999999999999999998765
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-43 Score=380.17 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=191.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--------cceEEEcCeecC
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--------SGTAYVQGLDIR 697 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt--------sG~I~i~G~di~ 697 (949)
+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999963 56999999999999999999999999999999999999998 999999999886
Q ss_pred c-cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 002236 698 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (949)
Q Consensus 698 ~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~----g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq 772 (949)
. ...+.++.+||+||++.++..+|++||+.+..... +....+..+.++++++.+++. +..++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT--ALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHH
Confidence 4 34455677999999987666699999998743211 111233456788999999997 4789999999999999
Q ss_pred HHHHHHHHc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 773 RLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 773 RLslA~ALi---------~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
|+++|+||+ .+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||++++++.+|||+++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 599999999999999999999999999986 44 8999999999999999999999999999
Q ss_pred EEEEcCHHHHH
Q 002236 842 LQCIGNPKELK 852 (949)
Q Consensus 842 l~~~Gs~~~Lk 852 (949)
++..|+++++.
T Consensus 233 i~~~g~~~~~~ 243 (272)
T PRK13547 233 IVAHGAPADVL 243 (272)
T ss_pred EEEecCHHHHc
Confidence 99999988763
No 190
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=372.87 Aligned_cols=222 Identities=26% Similarity=0.458 Sum_probs=195.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc--
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~-- 698 (949)
+++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|+++|.++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999963 569999999999999999999999999999999999874 489999999999854
Q ss_pred -cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 -~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
+....++.+||+||++.+++. |++||+.+.....+.. .+..++++.++++.+++.+ ....++.+.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 244567899999999999985 9999998765444332 2345678889999999842 1246888999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++|+||+.+|++++|||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999887789999999999999999999999999999999999998644
No 191
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-43 Score=420.05 Aligned_cols=229 Identities=25% Similarity=0.356 Sum_probs=200.3
Q ss_pred CcEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc
Q 002236 625 HAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~-----~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~ 699 (949)
.+|+++||+|.|+.+.+ ...+.+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|.++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 47999999999963211 0124699999999999999999999999999999999999999999999999998642
Q ss_pred ----HHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 002236 700 ----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (949)
Q Consensus 700 ----~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq 772 (949)
...++++|||+||++ .+++.+|+.|++.+....++. ...+.++++.++|+.+||.. ...++++++|||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHH
Confidence 223567899999997 589999999999886555553 23455678899999999952 3689999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
||+||+||+.+|++|||||||+|||+.+++.++++|+++ ++ |.|||++|||++++..+||||++|.+|++++.|++++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999986 43 8999999999999999999999999999999999999
Q ss_pred HHHh
Q 002236 851 LKAR 854 (949)
Q Consensus 851 Lk~~ 854 (949)
+...
T Consensus 551 i~~~ 554 (623)
T PRK10261 551 VFEN 554 (623)
T ss_pred HhcC
Confidence 8654
No 192
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.6e-43 Score=371.42 Aligned_cols=207 Identities=24% Similarity=0.337 Sum_probs=182.1
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCeecCccHHHhhccEEEEcCCCC--CCCCC
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL--LWETL 720 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p----tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~--L~~~l 720 (949)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... +..++.+||++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 999999999998543 223468999999984 56778
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 002236 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 721 Tv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~ 799 (949)
|++||+.+.....+......++++.++++.+++.+. ...++.+.+||||||||++||+||+.+|+|+||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 999999876554443334456778999999999621 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 800 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 800 sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+++.+++.|++.+ .|+|||++||++++++.+|||+++|++|+++..|+++++...
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999863 389999999999999999999999999999999999998653
No 193
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-43 Score=412.09 Aligned_cols=219 Identities=26% Similarity=0.378 Sum_probs=194.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-H-H
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-D-R 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-~-~ 702 (949)
.+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... . .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 46999999999963 56999999999999999999999999999999999999999999999999986422 2 2
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhh----hcCC---CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR----LKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~----l~g~---~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
.++.+||+||++.+++.+|++||+.+... ..+. +.++.+++++++++.+||. +..++++++||||||||++
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK--VDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 34679999999999999999999986432 1221 2234567789999999997 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999998764
No 194
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-42 Score=373.39 Aligned_cols=222 Identities=25% Similarity=0.372 Sum_probs=190.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee-----cCc-c
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT-D 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d-----i~~-~ 699 (949)
+|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (253)
T TIGR02323 3 LLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS 76 (253)
T ss_pred eEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence 6899999999963 468999999999999999999999999999999999999999999999987 543 1
Q ss_pred HH----HhhccEEEEcCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 002236 700 MD----RIYTSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (949)
Q Consensus 700 ~~----~~r~~iG~~pQ~~~--L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq 772 (949)
.. ..++.+||++|++. ++..+|+.||+.+... .........++.++++++.+++.+ ...++.+.+|||||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-TRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-hhhhcCchhcCHHHHH
Confidence 11 12467999999974 5566799999875322 111112234567889999999952 3679999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
|++|||||+.+|+++||||||+|||+.+++.++++|++. + .|.|||++||+++++..+|||+++|++|+++..|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999885 4 38999999999999999999999999999999999988
Q ss_pred HHHh
Q 002236 851 LKAR 854 (949)
Q Consensus 851 Lk~~ 854 (949)
+..+
T Consensus 236 ~~~~ 239 (253)
T TIGR02323 236 VLDD 239 (253)
T ss_pred HhcC
Confidence 8653
No 195
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-42 Score=410.04 Aligned_cols=215 Identities=26% Similarity=0.449 Sum_probs=193.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~- 702 (949)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999998642 222
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.++.+||+||++.+++.+|++||+.+.... ..+.+++++++++.++|. ...++++++|||||||||+||+||+.
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHHc
Confidence 235799999999999999999999875321 234567789999999996 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999986 4689999999999999999999999999999999998776
No 196
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=377.03 Aligned_cols=221 Identities=23% Similarity=0.403 Sum_probs=192.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
.+|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 19 ~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 19 SVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred ceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 47999999999973 4699999999999999999999999999999999999863 69999999998853
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
....+++.+||+||++.+++. |++||+.+....++.. ...++.++++++.+++.+ .+..++++.+||||||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred cchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHH
Confidence 233567899999999988875 9999998865444332 223456677888888731 1256889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe---------CCEEEEE
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQCI 845 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~---------~G~l~~~ 845 (949)
+||+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|+++..
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988778999999999999999999999998 8999999
Q ss_pred cCHHHHHH
Q 002236 846 GNPKELKA 853 (949)
Q Consensus 846 Gs~~~Lk~ 853 (949)
|+++++..
T Consensus 251 g~~~~~~~ 258 (274)
T PRK14265 251 SPTEQMFG 258 (274)
T ss_pred CCHHHHHh
Confidence 99999864
No 197
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.1e-43 Score=371.53 Aligned_cols=220 Identities=26% Similarity=0.476 Sum_probs=183.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|++|.|++++ ++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRP---DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCC---CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46899999997421 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.+||+||++.+++ .|++||+.+....+ ..++..+ .+.++++.+ ++. ...++.+.+||||||||+++|+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccc--eeeccCCccCCHHHHHHHHHHH
Confidence 8999999998887 69999998753221 1111111 122333333 443 3567888999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++ +|||+++|++|+++..|+.+++....
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999999999999998768899999999999998 79999999999999999998887653
No 198
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-42 Score=363.39 Aligned_cols=201 Identities=29% Similarity=0.376 Sum_probs=181.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999963 5699999999999999999999999999999999999999999999999998755456678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+++|++|++.+++.+|++||+.++...++. ..+++++++++.+||. +..++++.+||||||||+++|+||+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLA--GFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987665432 2356788999999996 46899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im 837 (949)
+++|||||+|||+.+++.++++|++. ++|+|||++||+++++++..+|++.+
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999986 46899999999999999977887665
No 199
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.3e-42 Score=375.88 Aligned_cols=227 Identities=24% Similarity=0.354 Sum_probs=195.6
Q ss_pred cEEEEeEEEEcCCC---CCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc---
Q 002236 626 AIISDNLRKIYPGR---DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~---~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--- 699 (949)
+|+++||+|.|++. .+..++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999630 000125799999999999999999999999999999999999999999999999988542
Q ss_pred -HHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 700 -MDRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 700 -~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
....++.+||+||++ .+++.+|++|++.+... +.+....+..+.++++++.+++.. ...++.+.+||||||||++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh-hHhhCCCccCChHHHHHHH
Confidence 234578899999997 46778999999876432 233444445567899999999952 3678999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
||+||+.+|+++||||||+|||+.+++.+.+.|++.+ + |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999988763
No 200
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-42 Score=377.52 Aligned_cols=232 Identities=25% Similarity=0.395 Sum_probs=205.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-C----CcceEEEcCeecCccH-
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-T----TSGTAYVQGLDIRTDM- 700 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-p----tsG~I~i~G~di~~~~- 700 (949)
++++||+..|....+ ...||+||||+|++||++||+|.+|||||||.+.|.|+++ | ++|+|.++|.|+..-.
T Consensus 2 L~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999999975432 4689999999999999999999999999999999999998 4 6899999999986422
Q ss_pred ---HHhh-ccEEEEcCCC--CCCCCCCHHHHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 002236 701 ---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 771 (949)
Q Consensus 701 ---~~~r-~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g-~-~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LSGGqK 771 (949)
.++| +.|+|+||++ .|.|-+|+.+.+.=..+.+. . .+++..+++.++|+.+||.+. ...+.++.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 2444 6899999996 68999999999887666543 3 456788899999999999852 266999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
||+.||+||+.+|++||.||||++||...+.++.++|++++ .|.++|++||||..+.++||||+||..|++++.|+.+
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 4999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEE
Q 002236 850 ELKARYGGSYV 860 (949)
Q Consensus 850 ~Lk~~~g~~y~ 860 (949)
++.+...+.|+
T Consensus 240 ~i~~~P~HPYT 250 (316)
T COG0444 240 EIFKNPKHPYT 250 (316)
T ss_pred HHhcCCCChHH
Confidence 99988777774
No 201
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=384.44 Aligned_cols=225 Identities=27% Similarity=0.443 Sum_probs=196.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~~ 698 (949)
..+|+++|+++.|.+. .+.+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~----~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999631 3569999999999999999999999999999999999986 579999999999863
Q ss_pred ---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh-HHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 002236 699 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~-~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqKq 772 (949)
....+|+.+||+||++.+++ .|++||+.|.....+...++ .++.+.++++.++|.+ ....++++.+|||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 23467889999999999886 69999999765444443332 3445788899998742 12468899999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|++|||||+.+|+||||||||+|||+.+++.+++.|++..+++|||++||+++++..+||||++|++|++++.|+++++.
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999999999999999999999999999986
Q ss_pred H
Q 002236 853 A 853 (949)
Q Consensus 853 ~ 853 (949)
.
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 4
No 202
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.1e-42 Score=364.98 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=186.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HHH
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~~ 702 (949)
++++|+++.|++.. ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... ...
T Consensus 2 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 78999999997421 126799999999999999999999999999999999999999999999999988532 124
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++.+||+||++.+++.+|+.||+.+....+. ...++.++.++++++.++|. +..++.+.+||||||||+++|+||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG--DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999998765542 34455667889999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
.+|+++||||||+|||+.+++.+++.|++.+ +|+|||++||+++.. .+||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999853 489999999999864 68999999999986
No 203
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=373.38 Aligned_cols=222 Identities=21% Similarity=0.359 Sum_probs=194.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecC--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIR-- 697 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~-- 697 (949)
..|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 15 QKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred ceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 46999999999963 4699999999999999999999999999999999999985 7999999998764
Q ss_pred -c--cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 002236 698 -T--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 771 (949)
Q Consensus 698 -~--~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~-~~~~~v~~~L~~l~L~~--~~~~~~~~~~LSGGqK 771 (949)
. ....+++.+||+||++.+++. |++||+.+.....+.... ..++++.++++.+++.+ .+..++.+.+||||||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 1 234567889999999999986 999999876554444332 33567888888888741 1356888999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
||++||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|+.+++
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877689999999999999999999999999999999999988
Q ss_pred HH
Q 002236 852 KA 853 (949)
Q Consensus 852 k~ 853 (949)
..
T Consensus 248 ~~ 249 (265)
T PRK14252 248 FI 249 (265)
T ss_pred Hh
Confidence 64
No 204
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-42 Score=366.06 Aligned_cols=206 Identities=25% Similarity=0.446 Sum_probs=177.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|++|.|+++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.. ...+.++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999642 2569999999999999999999999999999999999999999999999998754 3344567
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc-----------CCCCChhHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ-----------AGKYSGGMKRRL 774 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~-----------~~~LSGGqKqRL 774 (949)
.+||+||++.+++ .|++||+.+..... .++.+.++++.+++. +..++. +.+||||||||+
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAPLA------DDERILRAAELAGVT--DFVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCCCC------CHHHHHHHHHHcCcH--HHHHhccccccceecCCCccCCHHHHHHH
Confidence 8999999998887 69999997743211 134566788888885 244543 469999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++ ++|||+++|++|+++..|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999876569999999999987 599999999999997654
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=417.33 Aligned_cols=228 Identities=22% Similarity=0.346 Sum_probs=198.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-----
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----- 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~----- 698 (949)
+.+|+++||++.|++.. ..+.+++||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCC--CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 34799999999996421 13579999999999999999999999999999999999999999999999975421
Q ss_pred ------c---HHHhh-ccEEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCC
Q 002236 699 ------D---MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAG 764 (949)
Q Consensus 699 ------~---~~~~r-~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~-~~~~~~~~~ 764 (949)
. ..+.| +.|||++|++ .+++.+||+||+.+..+++ +.+..+.++++.++++.+||.+ ....++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 11233 4799999997 6889999999999876653 5666667788999999999953 125789999
Q ss_pred CCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 765 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 765 ~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999999999999999863 4 89999999999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 002236 843 QCIGNPKELKA 853 (949)
Q Consensus 843 ~~~Gs~~~Lk~ 853 (949)
+..|+++++..
T Consensus 248 ~~~g~~~~~~~ 258 (623)
T PRK10261 248 VETGSVEQIFH 258 (623)
T ss_pred cccCCHHHhhc
Confidence 99999988754
No 206
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.6e-42 Score=367.56 Aligned_cols=212 Identities=25% Similarity=0.367 Sum_probs=183.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+.
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 46999999999963 469999999999999999999999999999999999999999999999998864 33456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||+||++.+++. |++||+.+....++.. ..+++++++++.+++.+ ...++++.+||||||||++||+||+.+
T Consensus 80 ~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 80 RQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred HhccEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 7789999999998875 9999998765444321 23456789999999952 367999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEe-CCEEEEEcC
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV-DGSLQCIGN 847 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~-~G~l~~~Gs 847 (949)
|+++||||||+|||+.+++.+.++|++. + +|+|||++||++++++ .|||+++|+ ++..+..|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999986 3 4899999999999997 599999995 444444454
No 207
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-42 Score=369.53 Aligned_cols=198 Identities=32% Similarity=0.488 Sum_probs=176.1
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHH
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~ 727 (949)
++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..... ..+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999999999999999998864221 2489999999999999999998
Q ss_pred HHhh--hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHH
Q 002236 728 FYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 805 (949)
Q Consensus 728 ~~~~--l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~ 805 (949)
+..+ ..+....+.++++.++++.++|. +..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 8532 22344445566789999999996 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 806 NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 806 ~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+.|++. + .|+|||++||++++++.+|||+++|++|+++..|+..++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999885 4 389999999999999999999999999999988876554
No 208
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=6.7e-42 Score=367.88 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=188.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCeecCcc-HH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl--~~ptsG~I~i~G~di~~~-~~ 701 (949)
.+++++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 36999999999963 4699999999999999999999999999999999998 589999999999998642 22
Q ss_pred Hhh-ccEEEEcCCCCCCCCCCHHHHHHHHhhhc----CC---CchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHH
Q 002236 702 RIY-TSMGVCPQEDLLWETLTGREHLLFYGRLK----NL---KGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKR 772 (949)
Q Consensus 702 ~~r-~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~----g~---~~~~~~~~v~~~L~~l~L~~~~~~~~~~~-~LSGGqKq 772 (949)
..+ ..++|++|++.+++.+|++|++.+..... +. ...+..+++.++++.+++.+ ...++.+. +|||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHHHH
Confidence 222 25899999999999999999998754321 11 11233467788999999962 35678887 59999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEEcCHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l-~drI~Im~~G~l~~~Gs~~~ 850 (949)
|++||+||+.+|+++||||||+|||+.+++.++++|++. ++|+|||++||++++++.+ |||+++|++|+++..|+++.
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999999986 4589999999999999987 99999999999999999884
Q ss_pred H
Q 002236 851 L 851 (949)
Q Consensus 851 L 851 (949)
+
T Consensus 239 ~ 239 (252)
T CHL00131 239 A 239 (252)
T ss_pred h
Confidence 4
No 209
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-42 Score=347.22 Aligned_cols=217 Identities=26% Similarity=0.455 Sum_probs=194.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|.+++++..|+. .==.++++|+.||+++|+||+|||||||+++|+|++.|.+|+|.|+|+|..... -..|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccC
Confidence 3678899999963 334688999999999999999999999999999999999999999999986533 2457
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
-+++++|++.||..|||++|+.+... -++ -..+.+++++.++.++||. ++.++.+.+||||||||+++||+|+.+-
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~--~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLA--GFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChh--hHhhhCccccCchHHHHHHHHHHHhccC
Confidence 89999999999999999999987532 122 2356678999999999997 6999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|++||||+|.|||.-|.++..++.+. .++.|++|+||+.+++.+++||++++++|||...|+.+++.+.
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999885 4589999999999999999999999999999999999998764
No 210
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.2e-42 Score=360.32 Aligned_cols=202 Identities=23% Similarity=0.272 Sum_probs=181.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhh
Confidence 47999999999963 4699999999999999999999999999999999999999999999999988642 335
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||++|++.+++.+|++||+.+....++. ..++.++++++.++|. +..++++.+||||||||+++|+|++.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 6799999999999999999999887655442 2345678899999997 4689999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
++++|||||+|||+.+++.+++.|++. ++|+|||++||+++++..+|||+++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999875 5689999999999999999999999863
No 211
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=377.13 Aligned_cols=224 Identities=24% Similarity=0.427 Sum_probs=193.5
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCeecC
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 697 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-----ptsG~I~i~G~di~ 697 (949)
...+|+++||++.|++ +.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4457999999999973 569999999999999999999999999999999999986 69999999999885
Q ss_pred c---cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc------------CCCc-hhHHHHHHHHHHHcCCCC--CCcc
Q 002236 698 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK------------NLKG-PALTQAVEESLKSVNLFH--GGVA 759 (949)
Q Consensus 698 ~---~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~------------g~~~-~~~~~~v~~~L~~l~L~~--~~~~ 759 (949)
. ....+++.+||+||++.+++. |++||+.+..+.. +... ...++.+.++++.+++.+ ....
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 234567889999999988874 9999999754322 1111 223567889999998842 1356
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEE-EEEe
Q 002236 760 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL-GIFV 838 (949)
Q Consensus 760 ~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI-~Im~ 838 (949)
++++.+||||||||++||+||+.+|+||||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 888999999999999999999999999999999999999999999999999766799999999999999999997 5679
Q ss_pred CCEEEEEcCHHHHHH
Q 002236 839 DGSLQCIGNPKELKA 853 (949)
Q Consensus 839 ~G~l~~~Gs~~~Lk~ 853 (949)
+|+++..|+++++.+
T Consensus 275 ~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 275 GGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998864
No 212
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-42 Score=372.96 Aligned_cols=218 Identities=21% Similarity=0.382 Sum_probs=185.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..|+++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 46999999999963 2569999999999999999999999999999999999999999999999998752 1123
Q ss_pred ccEEEEcCCCCCC--CCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 705 TSMGVCPQEDLLW--ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 705 ~~iG~~pQ~~~L~--~~lTv~E~L~~~~~----l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
+.+||+||++.+. ...+++|++.+... ..+......+++++++++.++|. +..++++.+||||||||++||+
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHH
Confidence 4699999997652 23478888865311 11112234456788899999996 4789999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
||+.+|++++|||||+|||+.+++.+.++|++.+ +|+|||++||+++++..+|||++++ +|+++..|+++++.
T Consensus 156 aL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999864 5899999999999999999999777 89999999998864
No 213
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.5e-42 Score=362.85 Aligned_cols=201 Identities=29% Similarity=0.422 Sum_probs=177.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
+.++++++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. .
T Consensus 23 l~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----~--- 89 (224)
T cd03220 23 LGILGRKGEVGE------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----L--- 89 (224)
T ss_pred hhhhhhhhhcCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----h---
Confidence 678889998873 679999999999999999999999999999999999999999999999987531 1
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
.+...+++.+|++||+.+.....+....+.+++++++++.+++. +..++.+.+||||||||+++|+||+.+|++
T Consensus 90 ----~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 90 ----GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG--DFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred ----cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11234556789999999876655554455566788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|++++.|
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999986 45899999999999999999999999999998765
No 214
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-42 Score=363.98 Aligned_cols=217 Identities=23% Similarity=0.457 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|+++.|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999963 2469999999999999999999999999999999999999999999999998864 4455677
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.+||+||++.+++ .|++||+.+...- ....+..+ .+.+.++.+ ++. ...++++.+||||||||++||+
T Consensus 76 ~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYD--TIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999999886 6999999875321 11111111 122333333 333 2456778999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. |||+++|++|+++..|+.+++..+
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999987669999999999999976 999999999999999999888753
No 215
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.8e-42 Score=361.59 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=179.7
Q ss_pred cEEEEeEEEEcCCCCCCC-ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc--Ce--ecCc-c
Q 002236 626 AIISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GL--DIRT-D 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~-~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~--G~--di~~-~ 699 (949)
+|+++|++|.|+.+.... .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 478999999996321001 2479999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred HH---Hh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 700 MD---RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 700 ~~---~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
.. +. ++.+||+||++.+++.+|++|++.+.....+.......+++.++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-RLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhhCCcccCCHHHHHHHH
Confidence 11 22 4579999999999999999999987655445444455678889999999963 2458899999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im 837 (949)
+|+||+.+|++++|||||+|||+.+++.+.+.|++.+ +|+|||++||++++++.+|||++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999864 5899999999999999999999876
No 216
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.5e-42 Score=404.07 Aligned_cols=228 Identities=29% Similarity=0.445 Sum_probs=194.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc-Cee---cCc--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---IRT-- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~-G~d---i~~-- 698 (949)
.+|+++||+|.|++.+ ...+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++ |.+ +..
T Consensus 278 ~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred ceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 4799999999996310 013569999999999999999999999999999999999999999999996 643 321
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---CcccccCCCCChhHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKRR 773 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~---~~~~~~~~~LSGGqKqR 773 (949)
.....++++||+||++.+++.+|++||+.+...+ +.+.++.++++.++++.++|.+. +..++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1123466899999999999999999999875433 23333345678899999999631 25789999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
|+||+||+.+|++|||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999986 34 89999999999999999999999999999999999888
Q ss_pred HHh
Q 002236 852 KAR 854 (949)
Q Consensus 852 k~~ 854 (949)
.++
T Consensus 516 ~~~ 518 (520)
T TIGR03269 516 VEE 518 (520)
T ss_pred Hhh
Confidence 654
No 217
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.9e-42 Score=374.64 Aligned_cols=212 Identities=24% Similarity=0.447 Sum_probs=189.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
|+++|+++.|++. ...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....+|+
T Consensus 3 i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 3 MTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred EEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhh
Confidence 7899999999631 2469999999999999999999999999999999999998 79999999999864 4566788
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRRL 774 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~-----------LSGGqKqRL 774 (949)
.|||+||++.+|+. |++||+..+.. .. .+++.++++.+||. ++.++.+.. ||||||||+
T Consensus 78 ~i~~v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~--~~~~~~p~~l~~~~~~~g~~LS~G~~qrl 147 (275)
T cd03289 78 AFGVIPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLK--SVIEQFPGQLDFVLVDGGCVLSHGHKQLM 147 (275)
T ss_pred hEEEECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCH--HHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 99999999999985 99999975431 11 34677888999996 467777766 999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||+.+|+|++|||||+|||+.+++.+.+.|++..+++|||++||+++++.. ||||++|++|+++..|++++|.+.
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence 9999999999999999999999999999999999987779999999999999875 999999999999999999999874
No 218
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.1e-40 Score=424.96 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=193.8
Q ss_pred cEEEEeEEEEcCCCCC-------CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCeec
Q 002236 626 AIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDI 696 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~-------~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p--tsG~I~i~G~di 696 (949)
.+..+||+...+...+ ..++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988753211 1235799999999999999999999999999999999999773 789999999886
Q ss_pred CccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccC-----CCCCh
Q 002236 697 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQA-----GKYSG 768 (949)
Q Consensus 697 ~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~-----~~LSG 768 (949)
.. ...++.+|||+|++.+++.+||+|+|.|.+.++. .+.++..+.++++++.++|. +.+|+.+ +.|||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~--~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD--NLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh--hHhCCccCCCCCCCcCH
Confidence 42 3456789999999999999999999999876642 23344556799999999997 3678776 58999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEE
Q 002236 769 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCI 845 (949)
Q Consensus 769 GqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~me-eae~l~drI~Im~~-G~l~~~ 845 (949)
||||||+||++|+.+|++++|||||+|||+.++..+++.|+++ ++|+|||+|||+++ ++..+|||+++|++ |+++..
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999986 56999999999998 67889999999996 899999
Q ss_pred cCH----HHHHHhcC
Q 002236 846 GNP----KELKARYG 856 (949)
Q Consensus 846 Gs~----~~Lk~~~g 856 (949)
|++ +++.+.|.
T Consensus 1103 G~~~~~~~~~~~yF~ 1117 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFE 1117 (1470)
T ss_pred CCcccccccHHHHHH
Confidence 986 35554443
No 219
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.7e-42 Score=405.10 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=194.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEc------------
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQ------------ 692 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~ptsG~I~i~------------ 692 (949)
|+++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999963 56999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeecC-------c-c---HHHhhccEEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 002236 693 -----------GLDIR-------T-D---MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 749 (949)
Q Consensus 693 -----------G~di~-------~-~---~~~~r~~iG~~pQ~-~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~ 749 (949)
|.++. . . ...+++.+||+||+ +.+++.+|++||+.+.....+.+.++.++++.++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33321 1 0 12356789999997 688999999999998665556655566778999999
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHH
Q 002236 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEA 827 (949)
Q Consensus 750 ~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meea 827 (949)
.+||. +..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+++ + .|+|||++||+++++
T Consensus 155 ~~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 155 MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HcCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 99996 4789999999999999999999999999999999999999999999999999986 4 489999999999999
Q ss_pred HHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 828 EALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 828 e~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
+.+|||+++|++|+++..|+++++..++
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999999999999999999998876654
No 220
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-42 Score=356.71 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=170.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCeecCccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~---ptsG~I~i~G~di~~~~~~ 702 (949)
.+.++|++|.|++.. .++.+++++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 467999999998642 35689999999999999999999999999999999999999 8999999999998754445
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.++.+||+||++.+++.+|++||+.+..+.. .++.+.+||||||||+++|+||+.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 6788999999999999999999998753211 356788999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEE-EcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIl-tTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+|+++||||||+|||+.+++.++++|++. ++ +.|+|+ ++|+++++.++||++++|++|+++..|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999986 33 566555 566789999999999999999998654
No 221
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.4e-42 Score=368.25 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=185.3
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhcc
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 706 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~ 706 (949)
+++||++. .+|+|+||++++||++||+|+||||||||+++|+|+++ .+|+|+++|+++.. .....++.
T Consensus 2 ~~~~l~~~----------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred cccccchh----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhh
Confidence 45677763 28999999999999999999999999999999999986 49999999999864 34455677
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC----
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---- 782 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~---- 782 (949)
+||+||++.+++.+|++||+.+.... +...++..++++++++.++|. +..++.+.+||||||||+++|+||+.
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLD--DKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 99999999888889999999876422 223344567889999999996 47899999999999999999999998
Q ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 783 ---NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 783 ---~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+|+++||||||+|||+.+++.+.++|++.+ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 679999999999999999999999999864 6899999999999999999999999999999999988764
No 222
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=368.38 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=194.0
Q ss_pred CcEEEEeEEEEcCCCC--------------CCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 002236 625 HAIISDNLRKIYPGRD--------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~--------------~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~ 690 (949)
..|+++||+|+|.... ....+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4588999999987531 11346799999999999999999999999999999999999999999999
Q ss_pred EcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 691 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 691 i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
++|. +++++|...+.+.+|++||+.+.....+...++..+.++++++.+++. +..++.+++|||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq 148 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG--EFIYQPVKKYSSGM 148 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHH
Confidence 9985 467788877888899999998766555655556666778899999996 47899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
|||+++|+||+.+|+++||||||+|||+.+++.+++.|.+. ++|+|||++||+++++..+|||+++|++|++++.|+++
T Consensus 149 ~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 149 RAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999886 46899999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 002236 850 ELKARYGG 857 (949)
Q Consensus 850 ~Lk~~~g~ 857 (949)
++..+++.
T Consensus 229 ~~~~~~~~ 236 (264)
T PRK13546 229 DVLPKYEA 236 (264)
T ss_pred HHHHHhHH
Confidence 99887543
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-42 Score=402.11 Aligned_cols=216 Identities=25% Similarity=0.406 Sum_probs=192.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~ 702 (949)
.+|+++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|.++... ...
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 36999999999963 4699999999999999999999999999999999999999999999999998532 234
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhh--hcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGR--LKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~--l~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
.++.+||+||++.+++.+|++||+.+... ..+ ....+.+++++++++.++|. ...++++.+||||||||++||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHHH
Confidence 56789999999999999999999987532 122 23345567889999999996 36789999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|+.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999986 4689999999999999999999999999999877653
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.9e-42 Score=402.54 Aligned_cols=218 Identities=23% Similarity=0.437 Sum_probs=191.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCeecCcc-H-H
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M-D 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p--tsG~I~i~G~di~~~-~-~ 701 (949)
.|+++||+|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++... . .
T Consensus 1 ~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 1 LLEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred CEEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 3789999999963 5699999999999999999999999999999999999997 799999999998642 2 2
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc--C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~--g--~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
..++.+||+||++.+++.+|++||+.+..... + ...++.+++++++++.+++.+ ...++++++|||||||||+||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA-DNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC-CcccCchhhCCHHHHHHHHHH
Confidence 24568999999999999999999998754332 1 233445677899999999963 223678999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
+||+.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||++++++.+|||+++|++|+++..|++++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999986 468999999999999999999999999999999887654
No 225
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.6e-42 Score=361.30 Aligned_cols=208 Identities=20% Similarity=0.392 Sum_probs=178.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|++|.|++. ++.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 3 IEFKNVSLRYRPN----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEEEecCCC----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 7899999999742 2469999999999999999999999999999999999999999999999998854 3445678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLsl 776 (949)
.+||+||++.+++ .|++||+.++.. .. .+++.+.++.+++.+ +...++.+.+||||||||+++
T Consensus 79 ~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~l 150 (221)
T cd03244 79 RISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150 (221)
T ss_pred hEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHH
Confidence 8999999998886 599999975432 11 234555566666532 012356889999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
|+||+.+|+++||||||+|||+.+++.++++|++.++++|||++||++++++. |||+++|++|+++..|+
T Consensus 151 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999987778999999999999986 99999999999998775
No 226
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.4e-42 Score=395.27 Aligned_cols=236 Identities=25% Similarity=0.397 Sum_probs=206.9
Q ss_pred CCCcEEEEeEEEEcCCCC-----CCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC
Q 002236 623 TSHAIISDNLRKIYPGRD-----GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~-----~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~ 697 (949)
....++++||+|.|..++ ..+...||+||||++++||++||+|++|||||||.|+|+|+.+|++|+|.++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 345789999999998532 123478999999999999999999999999999999999999999999999998832
Q ss_pred ---ccHHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 698 ---TDMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 698 ---~~~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
....+.|+++-+++|++ .|.|.+||++.+.-..++++.. ..+.++++.++++.++|.. ++.++++.+||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-EFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-HHHhcCchhcCcchh
Confidence 12445667788888876 6999999999998877765433 4566678999999999984 589999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
||++|||||+.+|++|++|||||.|||..+..+.++|++++ -|.|.|++||||+.++.+||||++|.+|++++.|+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999999999864 3899999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 002236 850 ELKARYGGSY 859 (949)
Q Consensus 850 ~Lk~~~g~~y 859 (949)
.+.+...+.|
T Consensus 516 ~v~~~p~h~Y 525 (539)
T COG1123 516 KVFENPQHPY 525 (539)
T ss_pred HHhcCCCChH
Confidence 9887654444
No 227
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-42 Score=402.26 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=190.7
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHHhhcc
Q 002236 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTS 706 (949)
Q Consensus 629 v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~~r~~ 706 (949)
++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++... ....++.
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999963 5699999999999999999999999999999999999999999999999998532 2345678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~--~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
+||+||++.+++.+|++||+.+... .++. ..++..++++++++.+++. ...++++.+|||||||||+||+||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID--IDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987432 2222 2334456789999999996 378999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999986 4689999999999999999999999999999999987664
No 228
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2e-41 Score=363.21 Aligned_cols=221 Identities=20% Similarity=0.299 Sum_probs=186.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCeecCc-cHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT-DMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~ptsG~I~i~G~di~~-~~~~ 702 (949)
+|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.. +...
T Consensus 1 ~i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 4789999999973 46999999999999999999999999999999999995 6999999999998854 2222
Q ss_pred -hhccEEEEcCCCCCCCCCCHHHHHHHHh-hhc---C---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHH
Q 002236 703 -IYTSMGVCPQEDLLWETLTGREHLLFYG-RLK---N---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRR 773 (949)
Q Consensus 703 -~r~~iG~~pQ~~~L~~~lTv~E~L~~~~-~l~---g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~-~LSGGqKqR 773 (949)
.++.+||++|++.+++.+|+.+++.+.. .+. . .......+.+++.++.+++.+ +..++.+. +||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHHHH
Confidence 3467999999999988888877765421 111 1 111234567788999999953 45677775 899999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEEcCHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l-~drI~Im~~G~l~~~Gs~~~L 851 (949)
++||+||+.+|++++|||||+|||+.+++.+.+.|++++ +|+|||++||++++++.+ ||++++|++|+++..|+++.+
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999998864 589999999999999988 899999999999999998865
Q ss_pred HH
Q 002236 852 KA 853 (949)
Q Consensus 852 k~ 853 (949)
.+
T Consensus 234 ~~ 235 (248)
T PRK09580 234 KQ 235 (248)
T ss_pred HH
Confidence 43
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.4e-42 Score=404.94 Aligned_cols=227 Identities=22% Similarity=0.366 Sum_probs=195.7
Q ss_pred CcEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc
Q 002236 625 HAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~-----~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~ 699 (949)
.+|+++|+++.|++..+ ..++.+++|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++...
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 46999999999962100 012579999999999999999999999999999999999995 999999999988532
Q ss_pred -H---HHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 700 -M---DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 700 -~---~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g--~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
. ...++++||+||++ .+++.+|++||+.+....++ .+..+.+++++++++.++|.+ +..++++.+||||||
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQR 431 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-HHHhcCCccCCHHHH
Confidence 1 22467899999996 48889999999988654432 344445678899999999952 367999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
|||+||+||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999986 33 899999999999999999999999999999999999
Q ss_pred HHHH
Q 002236 850 ELKA 853 (949)
Q Consensus 850 ~Lk~ 853 (949)
++.+
T Consensus 512 ~~~~ 515 (529)
T PRK15134 512 RVFA 515 (529)
T ss_pred HHhc
Confidence 8864
No 230
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5e-42 Score=363.12 Aligned_cols=210 Identities=20% Similarity=0.384 Sum_probs=179.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~ 702 (949)
..+++++|+++.|+++. ++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 9 ~~~l~~~~l~~~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred CceEEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 35799999999997421 2469999999999999999999999999999999999999999999999998754 3345
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~-----~~~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
.++.+||+||++.+++ .|++||+.+..... ...+. ...++++++.+ |+. ...++++.+||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYD--TEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHH
Confidence 5678999999998886 59999998643211 11111 12356778888 775 3678899999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||++++++. |||+++|++|++
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999999987667999999999999975 999999999974
No 231
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-41 Score=354.51 Aligned_cols=202 Identities=22% Similarity=0.390 Sum_probs=175.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..++++|+++.|++. .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...+.
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCC----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 358999999999742 2469999999999999999999999999999999999999999999999998853 34456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||+||++.+++. |++||+.++. ... .+.+.+.++ .++++.+||||||||+++||||+.+
T Consensus 81 ~~~i~~v~q~~~~~~~-tv~~~l~~~~---~~~----~~~~~~~l~---------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 81 RSSLTIIPQDPTLFSG-TIRSNLDPFD---EYS----DEEIYGALR---------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HhhEEEEecCCcccCc-cHHHHhcccC---CCC----HHHHHHHhh---------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 7889999999988874 9999997542 111 122334333 2467899999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|+++||||||+|||+.+++.++++|++.++|+|+|++||++++++. |||+++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987779999999999999986 999999999999988763
No 232
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1e-41 Score=355.30 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=177.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++||+|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999963 56999999999999999999999999999999999999999999999999986544567789
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+.++... ..+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLN--GFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCCh--hhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999886421 1346788999999997 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im 837 (949)
+||||||+|||+.+++.+++.|++. ++|+|||++||+.++....|+|++.+
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999886 46899999999999999999999776
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-41 Score=401.12 Aligned_cols=227 Identities=19% Similarity=0.337 Sum_probs=195.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCcc
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~~ 699 (949)
.+|+++|++|.|++.+ ..+.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 3699999999996311 125799999999999999999999999999999999999997 799999999998542
Q ss_pred -H---HHhh-ccEEEEcCCCC--CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhH
Q 002236 700 -M---DRIY-TSMGVCPQEDL--LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 770 (949)
Q Consensus 700 -~---~~~r-~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l-~g~~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LSGGq 770 (949)
. ...| +++||+||++. +++.+|++|++.+.... .+.+..+..++++++++.+||.+. ...++++.+|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 2 1233 57999999974 67788999998865433 245555667889999999999631 13589999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|||++||+||+.+|++|||||||+||||.+++.++++|+++ ++ |+|||++||+++++..+||||++|++|+++..|++
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999986 44 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 002236 849 KELKA 853 (949)
Q Consensus 849 ~~Lk~ 853 (949)
+++..
T Consensus 242 ~~~~~ 246 (529)
T PRK15134 242 ATLFS 246 (529)
T ss_pred HHHhh
Confidence 88743
No 234
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=401.48 Aligned_cols=223 Identities=22% Similarity=0.406 Sum_probs=192.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCeecCcc--HH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTD--MD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-ptsG~I~i~G~di~~~--~~ 701 (949)
.+|+++||+|.|+.+ +++.+++|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|+++... ..
T Consensus 258 ~~l~~~~l~~~~~~~---~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 258 VILEVRNLTAWDPVN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ceEEEecCccccccc---cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 369999999999521 12469999999999999999999999999999999999999 5999999999988532 23
Q ss_pred HhhccEEEEcCCC---CCCCCCCHHHHHHHHh--hhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 702 RIYTSMGVCPQED---LLWETLTGREHLLFYG--RLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 702 ~~r~~iG~~pQ~~---~L~~~lTv~E~L~~~~--~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
..++.+||+||++ .+++.+|+.||+.+.. .+.+ ...++.+++++++++.+++.. ...++++++||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-CCcccccccCCHHHHHH
Confidence 4567899999985 5888999999998743 2221 123344567899999999952 36799999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
|+||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999999887664
No 235
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-41 Score=389.34 Aligned_cols=237 Identities=24% Similarity=0.388 Sum_probs=210.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----cceEEEcCeecCc--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----SGTAYVQGLDIRT-- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt----sG~I~i~G~di~~-- 698 (949)
..++++||++.|...++ ...||+||||+|.+||++||+|.+||||||+.+.|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~--~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCc--ceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 37999999999986522 367999999999999999999999999999999999999987 8999999998753
Q ss_pred --cHHHhh-ccEEEEcCCC--CCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 002236 699 --DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 --~~~~~r-~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq 772 (949)
.+.++| +.|+|+||++ .|-|-+|+.+.+.=..++++ ..+++.++++.++|+.++|.+....++++++|||||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 233344 6899999996 46677999999876666665 45788899999999999998633335799999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
|+.||+||+.+|++||+||||++||+..+.++.++|+++. .|.++|++|||++-+..+||||++|.+|++++.|++++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999863 59999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEE
Q 002236 851 LKARYGGSYVFTM 863 (949)
Q Consensus 851 Lk~~~g~~y~l~i 863 (949)
+.+++.+.|+-.+
T Consensus 242 i~~~p~hpYT~~L 254 (539)
T COG1123 242 ILSNPQHPYTRGL 254 (539)
T ss_pred HHhccCCcccHHH
Confidence 9999999887544
No 236
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=344.53 Aligned_cols=222 Identities=25% Similarity=0.456 Sum_probs=204.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc------
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------ 698 (949)
..++++||.|+||. ..+|++|||+.++|+++.|+|.+||||||+++||.=+.+|+.|.|.++|+.|+.
T Consensus 5 ~~l~v~dlHK~~G~------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhccc------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 46899999999984 679999999999999999999999999999999999999999999999998841
Q ss_pred --------cHHHhhccEEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 699 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 699 --------~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~-~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
...++|.++|+++|+..||..||+.||+.= .-..-|.++.+..++++.+|.++|+. +.++.++..||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~--ek~~~YP~~LSGG 156 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA--EKADAYPAHLSGG 156 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch--hhhhcCccccCch
Confidence 234678899999999999999999999754 23445788889999999999999997 4789999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 770 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 770 qKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|+||++|||||+.+|+++++|||||+|||+-.-++.++++++ .+|||.+++||.|..|...+++++++++|.+-+.|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 999999999999999999999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred HHHHHh
Q 002236 849 KELKAR 854 (949)
Q Consensus 849 ~~Lk~~ 854 (949)
+++...
T Consensus 237 ~qvf~n 242 (256)
T COG4598 237 EQVFGN 242 (256)
T ss_pred HHHhcC
Confidence 998653
No 237
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.5e-41 Score=349.75 Aligned_cols=188 Identities=31% Similarity=0.543 Sum_probs=167.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCeecCccHHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~ptsG~I~i~G~di~~~~~~~ 703 (949)
.|+++|++|.|++..+...+.+++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 488999999997421011257999999999999999999999999999999999999 9999999999999864 256
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||+||++.+++.+|++||+.+..++. +||||||||+++|+||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999997643210 7999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEEc
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~me-eae~l~drI~Im~~G~l~~~G 846 (949)
|++++|||||+|||+.+++.++++|++.+ +|+|||++||+++ ++..+|||+++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999864 5999999999996 788999999999999998754
No 238
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.9e-41 Score=364.86 Aligned_cols=219 Identities=20% Similarity=0.305 Sum_probs=185.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++. .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.
T Consensus 18 ~~i~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCVRYENN----LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEEEeCCC----CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999864 34566
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLsl 776 (949)
++.+||++|++.+++. |++||+..... .......+ .+++.++.+ ++. ...++.+.+||||||||+++
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~--~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLD--AVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccC--cEeccCCCcCCHHHHHHHHH
Confidence 7889999999988875 99999864211 01111111 233444444 454 35667789999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++.. |||+++|++|+++..|++++++++
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999999999999987779999999999999986 999999999999999999988764
No 239
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.8e-41 Score=363.20 Aligned_cols=202 Identities=25% Similarity=0.437 Sum_probs=179.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+++++||+|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 36899999999973 4699999999999999999999999999999999999999999999987 2
Q ss_pred ccEEEEcCCCCCCCC--CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 705 TSMGVCPQEDLLWET--LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~--lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
..+||+||++.+++. .|+++++.+.. +. .++++.++++.+++. +..++++.+||||||||+++|+||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAG--HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCCh--HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 469999999888776 47888775421 11 235678899999997 47899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||++++++.+|||+++|+ |++++.|+++++.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999999999999986 34 8999999999999999999999996 5799999998875
No 240
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.9e-41 Score=345.26 Aligned_cols=178 Identities=27% Similarity=0.509 Sum_probs=161.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|++|.|+++ ++.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.......++.
T Consensus 1 i~~~~~~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQ----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCC----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 4689999999742 136999999999999999999999999999999999999999999999999875433456788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++ .|++||+ +.+||||||||+++||||+.+|++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998886 6999987 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+++.|++.++++|||++||++++++ .|||+++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999998767899999999999997 59999999999998754
No 241
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.2e-41 Score=353.16 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=176.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.++.. . ..++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAE 73 (207)
T ss_pred EEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHh
Confidence 5899999999963 469999999999999999999999999999999999999999999999998753 2 2678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||++|++.+++.+|++||+.+.....+.. ++.+.++++.+||. ...++++++||||||||+++|+||+.+|+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLA--PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCH--HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998866554321 24578999999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
++||||||+|||+.+++.+++.|++. ++|+|||++||++++++. |+++-+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeec
Confidence 99999999999999999999999885 568999999999999987 8887664
No 242
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-41 Score=398.89 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=190.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCeecCc--cHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i~G~di~~--~~~ 701 (949)
.+|+++|+++.|++. +++.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 256 ~~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCccccccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 469999999999421 124699999999999999999999999999999999999995 89999999999853 224
Q ss_pred HhhccEEEEcCCC---CCCCCCCHHHHHHHHhh--hc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 702 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 702 ~~r~~iG~~pQ~~---~L~~~lTv~E~L~~~~~--l~---g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
.+++++||+||+. .+++.+|++||+.+... .. +......+++++++++.+++.+ ...++++++||||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-ASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-CCccCccccCCHHHHHH
Confidence 5678899999995 58999999999987431 21 1222334567899999999952 35799999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
++||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.++..
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999886 46899999999999999999999999999999877543
No 243
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=398.51 Aligned_cols=215 Identities=20% Similarity=0.417 Sum_probs=187.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~ 702 (949)
.+|+++|++|.|+ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ...
T Consensus 264 ~~l~~~~l~~~~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 4699999999763 289999999999999999999999999999999999999999999999988542 234
Q ss_pred hhccEEEEcCC---CCCCCCCCHHHHHHHHhhh-----c---CC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 703 IYTSMGVCPQE---DLLWETLTGREHLLFYGRL-----K---NL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 703 ~r~~iG~~pQ~---~~L~~~lTv~E~L~~~~~l-----~---g~-~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
.++.+||+||+ ..+++.+|++||+.+.... + +. .....+++++++++.+++.. +..++++++|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-HSVNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC-CCccCccccCChHH
Confidence 56789999998 4689999999999874321 1 11 22333456889999999952 36899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
||||+||+||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999999986 5689999999999999999999999999999887654
No 244
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.1e-41 Score=407.76 Aligned_cols=219 Identities=24% Similarity=0.456 Sum_probs=191.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~ 702 (949)
...|+++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +...
T Consensus 469 ~g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 469 QGEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred CceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHH
Confidence 3469999999999863 2479999999999999999999999999999999999999999999999999975 7888
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqR 773 (949)
+|++|||++|++.||.. |++||+.+..- . ...+++.++++..|..+ +.........||||||||
T Consensus 545 lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 545 LRRQVGYVLQDPFLFSG-SIRENIALGNP-----E-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HHhheeEEcccchhhcC-cHHHHHhcCCC-----C-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 99999999999999998 99999987531 1 11244444555444421 123345567899999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||||+++|+||+||||||+||+.+.+.+.+.|.+..+|+|+|++||....+. .||||+||++|+++..|+.+++.+
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999886 599999999999999999999998
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
+
T Consensus 697 ~ 697 (709)
T COG2274 697 Q 697 (709)
T ss_pred h
Confidence 8
No 245
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-41 Score=385.81 Aligned_cols=216 Identities=25% Similarity=0.412 Sum_probs=198.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC--ccHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~--~~~~~ 702 (949)
..++++|++|+|++ .+||+|+||++++|||+||+|.||||||||+|+|+|.++||+|+|+++|+.+. +..+.
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 46889999999984 78999999999999999999999999999999999999999999999999986 33455
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g----~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
....|+.++|+..|.|+|||.||+.+...... +.++..+++..++|+.+++.. + .+.++++||+||||.|.||+
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~-~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-D-PDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-C-hhhhhhhCCHHHHHHHHHHH
Confidence 56789999999999999999999987654332 567888999999999999963 3 89999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
||..+++|||||||||.|++...+.+.+++++++ +|.+||++||.|+|+.++||||.||.||+.+..++.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999975 699999999999999999999999999999988773
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-41 Score=341.90 Aligned_cols=172 Identities=44% Similarity=0.818 Sum_probs=159.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886533456788
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+||++.+++.+|++||+. ||||||||+++|+||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEEEecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999973 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
++|||||+|||+.+++.+++.|++. ++|.|||++||+++++..+|||+++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999986 4589999999999999999999999999974
No 247
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.7e-41 Score=344.45 Aligned_cols=173 Identities=24% Similarity=0.480 Sum_probs=159.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~~ 703 (949)
+++++|++|.| +++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 4 ~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 4 VLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred EEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 68999999987 89999999999999999999999999999999999999999999999998653 2345
Q ss_pred hccEEEEcCCC---CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 704 YTSMGVCPQED---LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 704 r~~iG~~pQ~~---~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
++.+||+||+. .+++.+|++||+.+... ||||||||+++|+||
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHHH
Confidence 77899999984 58888999999976421 999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
+.+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999986 4589999999999999999999999999974
No 248
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-41 Score=344.36 Aligned_cols=173 Identities=32% Similarity=0.573 Sum_probs=159.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc---HHHh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI 703 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~---~~~~ 703 (949)
|+++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 468999999963 5699999999999999999999999999999999999999999999999988643 3456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.++|+||++.+++.+|++||+.+. ||||||||+++|+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 78999999999999999999998642 999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
|++++|||||+|||+.++..++++|++. ++ |+|||++||++++++.+||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999986 44 7999999999999999999999999985
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.8e-41 Score=395.32 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=186.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 6899999999973 459999999999999999999999999999999999999999999999987753 334456
Q ss_pred ccEEEEcCCCCC--C-C-----CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 002236 705 TSMGVCPQEDLL--W-E-----TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 705 ~~iG~~pQ~~~L--~-~-----~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLsl 776 (949)
+.+||+||++.+ + + .+|++|++.+. .+.+++++++++.++|. ++.++++.+||||||||++|
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGIT--ALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCH--hhhhCCcccCCHHHHHHHHH
Confidence 679999998642 2 1 47888887542 12356788999999996 47899999999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999986 45899999999999999999999999999999999988764
No 250
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.1e-41 Score=348.91 Aligned_cols=196 Identities=29% Similarity=0.410 Sum_probs=173.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 468999999973 57999999999999999999999999999999999999999999999999986544456678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||++|++.+++.+|++||+.++....+ . + ++++.++++.+++. +..++++.+||||||||+++|+|++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHG--G-A-QRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcC--C-c-HHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999998765543 1 1 35678899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEE
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 836 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~I 836 (949)
++|||||+|||+.+++.+++.|++. ++|+|||++||+.+++ .|+|+..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 9999999999999999999999985 5689999999998654 4677653
No 251
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=384.43 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=189.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+++++||++.|+++ ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~---~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG---EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-------- 88 (549)
T ss_pred ceeEEEEEEEecCCC---ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--------
Confidence 468899999988642 135699999999999999999999999999999999999999999999999752
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
.++ +...+.+.+|++||+.+.....+....+..++++++++.+++. +..++++++||||||||++||+||+.+|
T Consensus 89 -~i~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~--~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 89 -LIA---ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG--KFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred -eEE---eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 122 2345677799999999866655655556667788999999996 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
++|||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|++++.|+++++..+|.
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999986 458999999999999999999999999999999999999876653
No 252
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.9e-41 Score=405.64 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=192.0
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--cceEEEcCeecCccHHHhhcc
Q 002236 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 629 v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt--sG~I~i~G~di~~~~~~~r~~ 706 (949)
++|++|.|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. +.+++
T Consensus 71 ~~~l~~~~~------~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~ 141 (659)
T PLN03211 71 ISDETRQIQ------ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKR 141 (659)
T ss_pred cccccccCC------CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccc
Confidence 566777775 357999999999999999999999999999999999999986 9999999998753 34567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcc-----cccCCCCChhHHHHHHHHH
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVA-----DKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~-----~~~~~~LSGGqKqRLslA~ 778 (949)
+||++|++.+++.+||+||+.+.+.++. .+.++.+++++++++.+||.+ .+ ++.+++||||||||++||+
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK--CENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh--hcCceeCCCCCCCcChhhhhHHHHHH
Confidence 9999999999999999999999776542 233455677899999999963 44 4567889999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~me-eae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
||+.+|+|++|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++.++||++++|++|+++..|+++++...+.
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~ 299 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFE 299 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999864 6999999999998 6899999999999999999999999987654
No 253
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.6e-41 Score=400.38 Aligned_cols=216 Identities=23% Similarity=0.408 Sum_probs=187.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|.+ ++.+|+|+||++++||.+||+|+||||||||+++|+|++ |++|+|.++|.|+.. +.+.+|
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 4999999987653 256999999999999999999999999999999999999 999999999999975 667889
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
++||||||++.+|+. |++|||.++. ...+ +++++++++..++.+ +.........||||||||++
T Consensus 423 ~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 423 KHLSWVGQNPQLPHG-TLRDNVLLGN--PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hheEEecCCCcCCCc-CHHHHhhcCC--CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 999999999999997 9999998852 1122 345555555555431 12233455679999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
|||||+.+|+|+|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+.++|.++.
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhcc
Confidence 999999999999999999999999999999999988889999999999988765 9999999999999999999998753
No 254
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=337.91 Aligned_cols=222 Identities=27% Similarity=0.431 Sum_probs=201.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
++.+++++-+|+++ ...|++|+|++|.+||.++++||+|||||||+++++|+.+|+.|+|.++|..|+....+
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae--- 75 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE--- 75 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc---
Confidence 57789999999863 25699999999999999999999999999999999999999999999999999764322
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
=|+|+|++.|+|.+|+.||+.|..+++|+++.+..+.+.+.+..+||. +..++++.+||||||||+.|||||+.+|+
T Consensus 76 -rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~--~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 -RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE--GAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred -ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc--cccccceEeecchHHHHHHHHHHhhcCcc
Confidence 399999999999999999999999999999999999999999999997 47799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeC--CEEEEEcCHHHHHHhcCCc
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKARYGGS 858 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~--G~l~~~Gs~~~Lk~~~g~~ 858 (949)
+++||||.++||.-.|+++.++|.++ + .|+.++++||++|||--+++|+++|+. ||++..-++. .-.+|..|
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d-f~rR~aag 228 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD-FARRYAAG 228 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC-HHHHhhcC
Confidence 99999999999999999999999874 4 599999999999999999999999985 7888877765 33445443
No 255
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9.1e-41 Score=375.99 Aligned_cols=214 Identities=27% Similarity=0.445 Sum_probs=197.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC--ccHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~--~~~~~ 702 (949)
..+++++++|+|++ ..|.+||||+|++|||.||||.||||||||++||.|+++||+|+|+++|+.+. ...+.
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46899999999983 78999999999999999999999999999999999999999999999999975 45677
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l---~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
++..||++.||..|++.+||.||+.+...- ..+..++.+++++++.++.||.- ..|+++.+||-|+|||+.|-+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v--dp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV--DPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC--CccceeecCCcchhHHHHHHHH
Confidence 889999999999999999999999987642 23466788899999999999973 5799999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
|..+|++|||||||+-|-|....+++++++++ ++|+|||++||-++|+.++|||+.||.+|+.+...
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 99999999999999999999999999999996 57999999999999999999999999999976443
No 256
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-40 Score=346.84 Aligned_cols=196 Identities=22% Similarity=0.295 Sum_probs=174.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|+++|+++.......++
T Consensus 1 ml~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEEEeCC------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 4789999999963 5699999999999999999999999999999999999999999999999998755556778
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
++||+||+..+++.+|++||+.+..... . .+..+.++++.+++. +..++++.+||||||||+++|+|++.+|+
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLE--HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCc--hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999998754321 1 134688999999996 36788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLG 835 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~ 835 (949)
++||||||+|||+.+++.+++.|++. ++|+|||++||+.+.++. ||...
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 99999999999999999999999986 468999999999988865 87654
No 257
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=343.41 Aligned_cols=185 Identities=27% Similarity=0.442 Sum_probs=165.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCeecCccHHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~ptsG~I~i~G~di~~~~~~~ 703 (949)
.|+++|+++.|++.. .++.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG--GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNF 77 (192)
T ss_pred EEEEeeeEEEecCCC--CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHh
Confidence 588999999997421 1256999999999999999999999999999999999986 489999999999885 456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.++|++|++.+++.+|++||+.+...++ +||||||||+++|+||+.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------cCCHHHhHHHHHHHHHhcC
Confidence 678999999999999999999998642100 7999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEEc
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIG 846 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~me-eae~l~drI~Im~~-G~l~~~G 846 (949)
|++++|||||+|||+.+++.+++.|++.+ +|+|||++||+++ ++..+|||+++|++ |+++..|
T Consensus 127 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 127 PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999864 5899999999998 58889999999999 9998765
No 258
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2e-40 Score=403.99 Aligned_cols=216 Identities=24% Similarity=0.393 Sum_probs=189.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|++. +.+.+
T Consensus 450 ~~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD----GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred ceEEEEEEEEEcCCC----CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999976 67789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.+|+. |++|||.++.. ..++++.++++..++.+ +.........||||||||+
T Consensus 526 r~~i~~v~Q~~~lf~g-TI~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSG-SIFENIAGGAP-------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred HhccEEEccCCccCcc-cHHHHHhcCCC-------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999987 99999987522 12456677777777642 0112234567999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||+.+|+++|||||||+||+.+++++.+.|++. ++|+|++||+++.++. ||||++|++|++++.|+.++|.++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999876 5899999999998875 999999999999999999999875
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
-
T Consensus 675 ~ 675 (686)
T TIGR03797 675 E 675 (686)
T ss_pred C
Confidence 3
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.7e-40 Score=344.49 Aligned_cols=186 Identities=25% Similarity=0.408 Sum_probs=164.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCeecCccH-H-H
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTDM-D-R 702 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl--~~ptsG~I~i~G~di~~~~-~-~ 702 (949)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.... . .
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGG------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeCC------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 468999999963 4699999999999999999999999999999999999 5899999999999986532 2 2
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.++.++|+||++.+++.+|+++++ ++...+||||||||+++|+||+.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH---------------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 345699999999999988888876 01225799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHH-hcCEEEEEeCCEEEEEcCHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~-l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+|++++|||||+|||+.+++.++++|++.+ +|+|||++||++++++. +|||+++|++|++...|+.+ +.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 999999999999999999999999999864 58999999999999998 79999999999999999544 44
No 260
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1e-40 Score=344.21 Aligned_cols=180 Identities=28% Similarity=0.498 Sum_probs=159.4
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHHHhhccEEEEcCCC--CCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQED--LLWET 719 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~~~r~~iG~~pQ~~--~L~~~ 719 (949)
+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+||+||++ .++ .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-A 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-c
Confidence 569999999999999999999999999999999999999999999999999852 2335577899999997 355 4
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 002236 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 720 lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~ 799 (949)
+|++||+.+.....+.+.++..++++++++.++|. +..++++.+||||||||+++|+||+.+|+++||||||+|||+.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 79999999865544555555667889999999996 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEcCCHHHH
Q 002236 800 SRNNLWNVVKRA-KQGRAIILTTHSMEEA 827 (949)
Q Consensus 800 sr~~l~~~L~~~-~~g~tIIltTH~meea 827 (949)
+++.++++|++. ++|+|||++||+++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999986 4589999999999864
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.1e-40 Score=341.72 Aligned_cols=177 Identities=30% Similarity=0.579 Sum_probs=160.8
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhcc
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 706 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~ 706 (949)
+++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 36899999963 469999999999999999999999999999999999999999999999999864 34456677
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+|| +++.+++. +..++.+.+||||||||+++||||+.+|++
T Consensus 75 i~~~~q----------------------------------~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 75 IAYVPQ----------------------------------ALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HhHHHH----------------------------------HHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999998 67778886 367889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+||||||+|||+.+++.+.++|++.+ + |+|||++||++++++.+|||+++|++|+++..|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999864 4 899999999999999999999999999987643
No 262
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-40 Score=389.36 Aligned_cols=222 Identities=26% Similarity=0.484 Sum_probs=194.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+.| ++..+++|+||+|++||++||+||||+||||+.++|-.++.|++|+|.+||+||++ +...+
T Consensus 464 G~IeF~~VsFaYP~R---p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR---PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCC---CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 469999999999975 46889999999999999999999999999999999999999999999999999986 77789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-------CCC--CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-------LFH--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~-------L~~--~~~~~~~~~~LSGGqKqRL 774 (949)
|++||+|-|+|.||.. |++|||.+... +.+.++ ++++.+..+ +.+ +..-..+..+||||||||+
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEE----IEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHH----HHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 9999999999999997 99999997543 333333 333333322 222 1234556668999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.||+||||||.||+||.++...+.+.|.+..+++|||++.|.++.++. +|+|+++++|++++.|+.+||.++
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhC
Confidence 9999999999999999999999999999999999998888999999999999986 999999999999999999999987
Q ss_pred cCC
Q 002236 855 YGG 857 (949)
Q Consensus 855 ~g~ 857 (949)
.++
T Consensus 693 ~~g 695 (716)
T KOG0058|consen 693 PNG 695 (716)
T ss_pred ccc
Confidence 643
No 263
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.3e-40 Score=337.24 Aligned_cols=171 Identities=32% Similarity=0.591 Sum_probs=156.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|+++.|++. ++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 4689999999742 2469999999999999999999999999999999999999999999999998864 3445678
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.++|++|++.+++. |++||+ ||||||||+++|+||+.+|+
T Consensus 77 ~i~~~~q~~~~~~~-tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 77 HVGYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred heEEECCCCccccC-cHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 89999999988875 999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++ .|||+++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 999999999999999999999999864 5899999999999986 7999999999974
No 264
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.3e-40 Score=395.88 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=194.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.+.+
T Consensus 337 ~~i~~~~v~f~y~~~----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred CeEEEEEEEEECCCC----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999975 56778
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc----------ccCCCCChhHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD----------KQAGKYSGGMKRR 773 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~----------~~~~~LSGGqKqR 773 (949)
|++|||+||++.+|+. |++||+.++.. +..++++.++++.+++.+ +.+ ....+||||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~--~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEK--LLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHH--HHcCccccCchhcCCCCCCCHHHHHH
Confidence 8999999999999986 99999987531 223567888899998863 332 2566799999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+++|||++.+|++++|||||++||+.+++.+.+.|.+..+++|+|++||+++.+.. ||||++|++|++++.|+.++|.+
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988889999999999999875 99999999999999999999987
Q ss_pred hcC
Q 002236 854 RYG 856 (949)
Q Consensus 854 ~~g 856 (949)
+.|
T Consensus 563 ~~g 565 (574)
T PRK11160 563 QQG 565 (574)
T ss_pred cCc
Confidence 644
No 265
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-40 Score=407.30 Aligned_cols=218 Identities=23% Similarity=0.401 Sum_probs=189.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|+++|.|+.. +...+
T Consensus 476 ~~I~~~~vsf~y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 476 GYVELRNITFGYSPL----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CeEEEEEEEEecCCC----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 369999999999742 3579999999999999999999999999999999999999999999999999975 66788
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.+|+. |++|||.++.. +..++++.++++..++.+ +.........||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122445666666666532 1123344567999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+|+|||||||+||+.+++++.+.|++ .++|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999976 58999999999999875 999999999999999999999876
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
.|
T Consensus 702 ~~ 703 (710)
T TIGR03796 702 GG 703 (710)
T ss_pred CC
Confidence 44
No 266
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2e-40 Score=396.72 Aligned_cols=220 Identities=21% Similarity=0.402 Sum_probs=190.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|+++ ++.+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 341 ~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGK----EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCC----CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 59999999999742 3579999999999999999999999999999999999999999999999999975 566788
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
+.+||+||++.+|+. |++|||.++. +.+..+++++++++.+++.+ +........+||||||||++
T Consensus 417 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hhceEEccCceeecc-hHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 999999999999986 9999998742 11123456667777766531 01223334679999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
|||||+.+|+|++|||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999998888899999999998876 59999999999999999999998764
Q ss_pred C
Q 002236 856 G 856 (949)
Q Consensus 856 g 856 (949)
+
T Consensus 570 ~ 570 (582)
T PRK11176 570 G 570 (582)
T ss_pred C
Confidence 3
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-40 Score=336.31 Aligned_cols=170 Identities=29% Similarity=0.619 Sum_probs=155.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
++++|++|.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 4689999999742 1369999999999999999999999999999999999999999999999998854 3345677
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+||+||++.+++ .|++||+ ||||||||+++|+||+.+|+
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 8999999998887 5999887 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
++||||||+|||+.+++.++++|++.++++|||++||++++++. |||+++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999987668999999999999988 99999999985
No 268
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=388.99 Aligned_cols=215 Identities=25% Similarity=0.415 Sum_probs=187.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~ 702 (949)
..++++|+++ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .+.
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4688999974 279999999999999999999999999999999999999999999999998642 234
Q ss_pred hhccEEEEcCCC---CCCCCCCHHHHHHHHhh--hc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~---~L~~~lTv~E~L~~~~~--l~---g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
.++++||+||++ .+++.+|++||+.+... .. + ...++.+++++++++.++|.. +..++++++||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-PSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-CCccCchhhCCHHHHHH
Confidence 567899999995 58889999999987421 11 1 222344567899999999942 36899999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
|+||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|+++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999998887654
No 269
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-40 Score=406.93 Aligned_cols=222 Identities=30% Similarity=0.531 Sum_probs=193.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+.++|+.| ++..+++|+||.|++||+++|+|||||||||++++|.+++.|++|+|+++|.|+++ +.+.+
T Consensus 349 g~ief~nV~FsYPsR---pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR---PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred cceEEEEEEecCCCC---CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 469999999999975 46789999999999999999999999999999999999999999999999999986 67889
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~-------~--~~~~~~~~~~LSGGqKqRL 774 (949)
|.+||.|.|+|.||.. |++||+.|.. ++..+++++++.+..+.. + +.....+..+||||||||+
T Consensus 426 r~~iglV~QePvlF~~-tI~eNI~~G~------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRI 498 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFAT-TIRENIRYGK------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRI 498 (1228)
T ss_pred HhhcCeeeechhhhcc-cHHHHHhcCC------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHH
Confidence 9999999999998875 9999998742 122334445554444321 0 1223344456999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+|||||||||+||+++++.+.+.|.++.+|||.|+++|++.++.. +|+|++|++|++++.|+++||.++
T Consensus 499 AIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 499 AIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999999987
Q ss_pred cCC
Q 002236 855 YGG 857 (949)
Q Consensus 855 ~g~ 857 (949)
-|.
T Consensus 578 ~G~ 580 (1228)
T KOG0055|consen 578 GGI 580 (1228)
T ss_pred cch
Confidence 644
No 270
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5e-40 Score=394.21 Aligned_cols=217 Identities=18% Similarity=0.323 Sum_probs=191.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++ ++.+++|+||++++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.. +.+.+
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 35999999999973 2469999999999999999999999999999999999999999999999999975 66788
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.+|++ |++|||.++. .. .+++++++++.+|+.+ +.........||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CC----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999998 9999999863 12 2345677777777642 0122334567999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+|++|||||++||+.+.+.+.+.|++..+++|+|++||+++... .||||++|++|++++.|+.++|.++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999998876 4999999999999999999999866
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 565 ~ 565 (592)
T PRK10790 565 Q 565 (592)
T ss_pred C
Confidence 4
No 271
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.2e-40 Score=400.86 Aligned_cols=220 Identities=24% Similarity=0.443 Sum_probs=191.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|++. ++.+++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +...+
T Consensus 462 ~~I~~~~vsf~Y~~~----~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999975 66788
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.+|+. |++|||.+... +..++++.++++..++.+ +.........||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122445666666666531 1123345568999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||+.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+.++|.++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999999888999999999999875 6999999999999999999999766
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
-.
T Consensus 690 ~~ 691 (694)
T TIGR03375 690 LR 691 (694)
T ss_pred hh
Confidence 43
No 272
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=388.46 Aligned_cols=214 Identities=21% Similarity=0.395 Sum_probs=186.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--cHHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~~~~~ 703 (949)
.++++|++ + +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .....
T Consensus 257 ~l~~~~~~--~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 257 RLRLDGLK--G--------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred EEEEeccc--c--------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 58889887 2 138999999999999999999999999999999999999999999999998853 23445
Q ss_pred hccEEEEcCCC---CCCCCCCHHHHHHHHhhhc----C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQED---LLWETLTGREHLLFYGRLK----N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~---~L~~~lTv~E~L~~~~~l~----g--~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
++.+||+||++ .+++.+|+.||+.+....+ + .+....++.++++++.+++.+ +..++++.+|||||||||
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQKA 405 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc-CCccCccccCCHHHHHHH
Confidence 67899999986 4889999999998743221 1 122233467889999999942 368999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
+||+||+.+|++|||||||+|||+.+++.++++|+++ ++|.|||++|||+++++.+|||+++|++|+++..|++++
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999986 458999999999999999999999999999999887765
No 273
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=379.11 Aligned_cols=217 Identities=26% Similarity=0.460 Sum_probs=191.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
+..+||++.|++ .+++++|+||++++|+.++|+|+||||||||+++|.|+.+|++|+|.+||.+.++ +...+|+
T Consensus 321 i~~~~l~~~y~~-----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 321 ISLENLSFRYPD-----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeecceEEecCC-----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 445699999985 2489999999999999999999999999999999999999999999999999976 6678999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC----CcccccC----CCCChhHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG----GVADKQA----GKYSGGMKRRLSVA 777 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~----~~~~~~~----~~LSGGqKqRLslA 777 (949)
++++++|++.+|+. |++||+.++. .+..++++.+++++.+|.+. +-.|..+ ..|||||+|||++|
T Consensus 396 ~i~~v~Q~p~lf~g-TireNi~l~~------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 QISWVSQNPYLFAG-TIRENILLAR------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HeeeeCCCCccccc-cHHHHhhccC------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 99999999999998 9999999863 22345677888888877530 0123333 45999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
|||+.+++++++||||++||.++.+.+.+.|.+..+++|+|++||+++.+.. +|+|++|++|++++.|++++|.++-|
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCc
Confidence 9999999999999999999999999999999999889999999999999876 99999999999999999999976643
No 274
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.8e-40 Score=367.20 Aligned_cols=189 Identities=29% Similarity=0.506 Sum_probs=172.2
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH
Q 002236 663 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 742 (949)
Q Consensus 663 LLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~ 742 (949)
|+||||||||||+++|+|+++|++|+|.++|+++.... ..++++||+||++.+|+.+|++||+.+..+.++.+..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999999999999999986432 24678999999999999999999999976666655556667
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEE
Q 002236 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILT 820 (949)
Q Consensus 743 ~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIlt 820 (949)
+++++++.++|. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++
T Consensus 80 ~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 80 RVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 899999999997 4789999999999999999999999999999999999999999999999999986 33 8999999
Q ss_pred cCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 821 THSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 821 TH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||+++|+..+|||+++|++|+++..|+++++.++
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998654
No 275
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.3e-40 Score=402.30 Aligned_cols=219 Identities=24% Similarity=0.473 Sum_probs=187.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+++ +++.+++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||+++.+ +.+.+
T Consensus 477 ~~I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR---PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCC---CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 359999999999753 23579999999999999999999999999999999999999999999999999975 56778
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.+|+. |++|||.+... . ..++++.++++..++.+ +........+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~----~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--D----TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--C----CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 8999999999999986 99999987521 1 12456667777776642 0122334567999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||||++.+|+|+|||||||+||+.+.+.+.+ ....+++|+|++||+++.++. ||||++|++|++++.|++++|.++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999999999998 333468999999999998865 999999999999999999999887
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
.|
T Consensus 704 ~~ 705 (711)
T TIGR00958 704 QG 705 (711)
T ss_pred CC
Confidence 54
No 276
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-40 Score=326.01 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=195.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----HH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~----~~ 701 (949)
.|++++++|+-+... ....+|++|+|.|++||-+||+||+|||||||+-+|+|+..|++|+|.+.|+++.+- ..
T Consensus 6 ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 688999999998643 367899999999999999999999999999999999999999999999999998652 22
Q ss_pred Hhh-ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 702 RIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 702 ~~r-~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+.| +++|+|||...|.|+||..||+.....++|-...+..+...++|+.+||. +..+.++++||||++|||+||||+
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg--~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG--KRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc--cccccCccccCchHHHHHHHHHHh
Confidence 334 68999999999999999999999999999877777788899999999997 478999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
+..|+|+|.||||.+||-..-+++.+++-.. ..|.|.|++|||...|.+ |+|++-|.+|+++.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 9999999999999999999999999999764 359999999999999876 99999999999975
No 277
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=9.1e-40 Score=346.11 Aligned_cols=194 Identities=32% Similarity=0.515 Sum_probs=169.7
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCC--CCCHHHHHHHHh
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE--TLTGREHLLFYG 730 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~--~lTv~E~L~~~~ 730 (949)
|+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++. ..++++||+||++.++. .+|++||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578999999999999999999999999999999999999998763 34678999999987643 479999998742
Q ss_pred hhc-C---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002236 731 RLK-N---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 806 (949)
Q Consensus 731 ~l~-g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~ 806 (949)
... + ......++++.++++.+++. +..++.+.+||||||||+++|+||+.+|+++||||||+|||+.+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLT--ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 210 1 12233456789999999997 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 807 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 807 ~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.|++.+ +|+|||++||+++++..+|||++++ +|+++..|+++++.+
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 999864 5899999999999999999999999 899999999888754
No 278
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-41 Score=339.05 Aligned_cols=220 Identities=25% Similarity=0.445 Sum_probs=204.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
||+++|++|.|++ +.+|+++|++|++|.+++++||||||||||++|++.|+++++|+|+++|+++.. +.+++.
T Consensus 1 MI~i~nv~K~y~~------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYGT------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhCC------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 5889999999984 789999999999999999999999999999999999999999999999999974 667788
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHh--hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~--~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
+.+++.-|.+.+-..+||+|-+.|+. .-+|...++.++.++++++.++|+ +..|++..+||||||||.-+|+.++.
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~--~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE--DLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc--chHHHhHHhcccchhhhhhhheeeec
Confidence 89999999999999999999888732 235777788899999999999998 59999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+.+.++||||.+.||......++++++++ ++ ||||+++-||+..|..++|+|+-|++|+++..|+++++.+
T Consensus 153 dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999986 44 9999999999999999999999999999999999999754
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=384.41 Aligned_cols=215 Identities=20% Similarity=0.370 Sum_probs=184.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~ 702 (949)
.+|+++|+++.| +.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++... .+.
T Consensus 249 ~~i~~~~l~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR--------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred cEEEEeCccccc--------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 479999999974 2499999999999999999999999999999999999999999999999998642 234
Q ss_pred hhccEEEEcCCC---CCCCCCCHHHHH-----HHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQED---LLWETLTGREHL-----LFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~---~L~~~lTv~E~L-----~~~~~l~g~-~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
.++.+||+||+. .+++.+|+.+|. .++....+. .....++.+.++++.+++.+ +..++++.+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-PGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-CCcccccccCCcHHHHH
Confidence 567899999985 478889888773 322222232 23445667889999999952 35799999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|+||+||+.+|+||||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..++.
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999999999999999999999999999999886 4699999999999999999999999999999976654
No 280
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-40 Score=322.66 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=201.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec--Cc-----
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RT----- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di--~~----- 698 (949)
.|+++|+++.||. ..+|-||+|+-++||.+.|+||+|||||||+|.|.=+.-|.+|+..|.|... .+
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 5899999999984 6799999999999999999999999999999999999999999999988554 22
Q ss_pred cHHHhhccEEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 699 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 699 ~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~-~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
...++|+++|+++|...|||.|||.|||.- ..+..|+++++.+.+..++|+++.|. +++|+.+-.|||||+||++||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~--~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK--PYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--cccccCceecccchhhhHHHH
Confidence 345688999999999999999999999854 56778999999999999999999997 599999999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
|||+.+|+|+++||||++|||+-..++.++|+++. .|.|-+++||..+.|...+.|++.|++|+|++.|+....
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999975 599999999999999999999999999999999997654
No 281
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-39 Score=385.17 Aligned_cols=215 Identities=21% Similarity=0.380 Sum_probs=185.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H-HH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~-~~ 702 (949)
.+|+++|+++ .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++... . ..
T Consensus 267 ~~l~~~~l~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 267 PVLTVEDLTG-----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred ceEEEeCCCC-----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 4799999983 169999999999999999999999999999999999999999999999988642 2 23
Q ss_pred hhccEEEEcCCC---CCCCCCCHHHHHHHHh--hhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 002236 703 IYTSMGVCPQED---LLWETLTGREHLLFYG--RLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 703 ~r~~iG~~pQ~~---~L~~~lTv~E~L~~~~--~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLsl 776 (949)
.++.+||+||++ .+++.+|+.||+.... ... .......++.++++++.++|.. ...++++++|||||||||+|
T Consensus 336 ~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-CCccCccccCCcHHHHHHHH
Confidence 456899999984 5888999999986431 111 1112334567889999999952 36899999999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
|+||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999986 4589999999999999999999999999999998887654
No 282
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-39 Score=385.17 Aligned_cols=220 Identities=29% Similarity=0.514 Sum_probs=187.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..++++|+++.|++. ++.+++|+||++++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.. +.+..
T Consensus 315 ~~i~~~~v~~~y~~~----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999875 55678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHH-----HHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-----VEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~-----v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLsl 776 (949)
|+.+||+||++.+|+. |++||+.++.. ..+.++..+. .++.++.+ |++ ...++...+||||||||+++
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYD--TVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc--cccCCCcCCCCHHHHHHHHH
Confidence 8999999999999987 99999986431 1222222221 23444444 343 34566788999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|||++.+|+++||||||+|||+.+++.+.+.|++.+ +|+|+|++||+++.++ .||||++|++|++++.|+.+++.++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999999875 6899999999999875 6999999999999999999998653
No 283
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.5e-40 Score=400.33 Aligned_cols=219 Identities=21% Similarity=0.384 Sum_probs=188.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++ ++.+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|+++|.|+.. +.+.+
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 36999999999963 2569999999999999999999999999999999999999999999999999975 66788
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.+|+. |++|||.++.+ ...+ ++++.++++..++.+ +.........||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999988522 1122 344556666555531 1223445678999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||||++.+|+++||||||++||+.+++.+.+.|++. +|+|+|++||+++.++ .||||++|++|++++.|+.++|.++
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999875 6899999999999875 5999999999999999999999876
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
.|
T Consensus 699 ~~ 700 (708)
T TIGR01193 699 NG 700 (708)
T ss_pred CC
Confidence 43
No 284
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.5e-39 Score=388.17 Aligned_cols=216 Identities=28% Similarity=0.527 Sum_probs=188.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|++ ++++++|+||++++||.+||+||+||||||+++.|.|+++|++|+|.+||.|++. +.+.+|
T Consensus 328 ~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 328 SIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred eEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4999999999974 3689999999999999999999999999999999999999999999999999986 678899
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
++|||+||++.||. -|++||+.++..- .+ ++++.++++..++.+ +.........||||||||++
T Consensus 403 ~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at----~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 403 KRIGIVSQDPLLFS-GTIRENIALGRPD--AT----DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred HhccEEcccceeec-ccHHHHHhcCCCC--CC----HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 99999999999999 5999999985321 12 234444444443221 12334455689999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||||++.+|+|++||||||+||+.+.+.+.+.+.+..+|||+|+++|.++.+.. ||||++|++|++++.|++++|.++
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999987788999999999999988 999999999999999999999887
No 285
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=383.57 Aligned_cols=208 Identities=22% Similarity=0.364 Sum_probs=180.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 1 ml~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------E 64 (530)
T ss_pred CEEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------C
Confidence 4789999999963 56999999999999999999999999999999999999999999999873 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhh-h----------cCCC---------------------chhHHHHHHHHHHHcCC
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGR-L----------KNLK---------------------GPALTQAVEESLKSVNL 753 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~-l----------~g~~---------------------~~~~~~~v~~~L~~l~L 753 (949)
.+||+||++.+++.+|++|++.+... . .+.+ ..+.+++++++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999976321 0 0100 11234678899999999
Q ss_pred CCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCE
Q 002236 754 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 754 ~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~dr 833 (949)
.+ ...++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|++ .|.|||++||+++++..+|||
T Consensus 145 ~~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 145 PE-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred Ch-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcce
Confidence 63 234578999999999999999999999999999999999999999999999974 589999999999999999999
Q ss_pred EEEEeCCEEE-EEcCHHHHH
Q 002236 834 LGIFVDGSLQ-CIGNPKELK 852 (949)
Q Consensus 834 I~Im~~G~l~-~~Gs~~~Lk 852 (949)
+++|++|+++ +.|++++..
T Consensus 222 i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 9999999994 789887653
No 286
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.3e-39 Score=387.98 Aligned_cols=220 Identities=21% Similarity=0.365 Sum_probs=186.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.++++|+++.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999974 2468999999999999999999999999999999999999999999999999875 556788
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~-----~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
+.+||+||++.+++. |++||+.++.. ..+.++..+..+ +.+..+ |+. ...++...+||||||||+++|
T Consensus 409 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~--t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 409 KSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred hheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccc--chhcCCCCCCCHHHHHHHHHH
Confidence 999999999999975 99999987521 122222222211 122222 222 234566788999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
|||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||++++++. ||||++|++|+++..|+.+++.++.|
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 561 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQKDG 561 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHCCC
Confidence 9999999999999999999999999999999988789999999999999965 99999999999999999999987644
No 287
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=330.74 Aligned_cols=222 Identities=26% Similarity=0.389 Sum_probs=203.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC-eecCc--cHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDIRT--DMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G-~di~~--~~~ 701 (949)
..+.++|++.+|++ .+||+++||+|.+||.-+|+|||||||||++..|+|-.+|+.|+++++| .|+.. ..+
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 46889999999985 7899999999999999999999999999999999999999999999999 88875 334
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l--------~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
.+|..||-=+|.+..|+.+||+|||.+..+. ......+.+++++++|+..||. +.++..+..||-||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~--~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG--DERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc--hhhhhhhhhhccchhhh
Confidence 5677888899999999999999999985432 2223345567999999999997 47999999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|.|++-++++|++|+||||++||-...+.+.-++|+.++++++|+++.|||+.++.+++||.+|+.|.+.|.|+.+++.+
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 236 d 236 (249)
T COG4674 236 D 236 (249)
T ss_pred C
Confidence 5
No 288
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.1e-39 Score=395.46 Aligned_cols=220 Identities=26% Similarity=0.486 Sum_probs=189.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. +.+.+
T Consensus 454 ~~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 454 GAITFENIRFRYAPD----SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999975 66788
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.+|+. |++|||.+... ..+ ++++.++++..++.+ +........+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 122 334444555544321 1234556678999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||+.+|+++||||||+|||+.+++.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 9999999999999999999999999999999999998889999999999999875 999999999999999999999876
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
.|
T Consensus 682 ~~ 683 (694)
T TIGR01846 682 QG 683 (694)
T ss_pred CC
Confidence 43
No 289
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.5e-39 Score=387.95 Aligned_cols=217 Identities=23% Similarity=0.406 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|++ ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. +.+.+|
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999974 2459999999999999999999999999999999999999999999999999975 567789
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
++|+|+||++.+|+. |++||+.++. ...+ ++++.++++.+++.+ +.........||||||||++
T Consensus 409 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 409 RNIAVVFQDAGLFNR-SIEDNIRVGR--PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred hheEEEecCcccccc-cHHHHHhcCC--CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 999999999999986 9999998752 1122 344555556555431 01223345579999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
|||||+.+|+|++|||||++||+.+++.+.+.|++..+++|+|++||+.+.++ .||||++|++|+++..|+.+++.++.
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 99999999999999999999999999999999998877999999999998875 59999999999999999999997663
No 290
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-39 Score=338.20 Aligned_cols=193 Identities=22% Similarity=0.396 Sum_probs=159.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++||+|.|+++. .+.+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~-~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGE-QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------S 67 (204)
T ss_pred CEEeEEEEecCCCC-ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------E
Confidence 46899999997420 0013699999999999999999999999999999999999999999999998 5
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC---------CCCcccccCCCCChhHHHHHHHH
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF---------HGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~---------~~~~~~~~~~~LSGGqKqRLslA 777 (949)
|||+||++.+++ +|++||+.+.... .. +...+.++.+++. .+...++.+.+||||||||+++|
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF---DE----ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc---CH----HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 999999999885 6999999875332 11 1222233333221 11245677899999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~-L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
+||+.+|++++|||||+|||+.+++.+++. +++. ++|+|||++||++++++. |||+++|++|+
T Consensus 140 ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999985 5654 458999999999999998 99999999985
No 291
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.2e-39 Score=325.41 Aligned_cols=159 Identities=30% Similarity=0.543 Sum_probs=147.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHHhh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 704 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~~r 704 (949)
|+++|++|.|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... .+..+
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 468999999963 4699999999999999999999999999999999999999999999999998653 23456
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+||+|| ||||||||+++|+||+.+|
T Consensus 75 ~~i~~~~q-----------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 75 AGIAMVYQ-----------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred cCeEEEEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 78999999 9999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
++++|||||+|||+.+++.+++.|++. ++|+|||++||+++++..+|||+++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999986 458999999999999999999999999999875
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-39 Score=385.71 Aligned_cols=219 Identities=19% Similarity=0.378 Sum_probs=189.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+|
T Consensus 313 ~I~~~~v~~~y~~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQT----DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCC----CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 58999999999742 3569999999999999999999999999999999999999999999999999865 556788
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
+++||+||++.+|+. |++||+.++.. .. .++++++.++..++.+ +...+....+||||||||++
T Consensus 389 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 389 SRLAVVSQTPFLFSD-TVANNIALGRP--DA----TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred hheEEEccCCeeccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 999999999999986 99999987421 11 2344555666655531 12234556789999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
+||||+.+|+++||||||+|||+.+++.+++.|++..+|+|+|++||+++.++ .||||++|++|+++..|+.+++.++.
T Consensus 462 lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999998878999999999999876 49999999999999999999998765
Q ss_pred C
Q 002236 856 G 856 (949)
Q Consensus 856 g 856 (949)
+
T Consensus 541 ~ 541 (569)
T PRK10789 541 G 541 (569)
T ss_pred C
Confidence 4
No 293
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-40 Score=374.25 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=196.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.++++|++++|+++ +.+||+|+||++++||-++|+|++||||||++..|+|.++|++|+|.++|.++.. +..++|
T Consensus 336 ~l~~~~vsF~y~~~----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccceeecCCC----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 78999999999863 4579999999999999999999999999999999999999999999999999976 445588
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---C------CcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---G------GVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---~------~~~~~~~~~LSGGqKqRLs 775 (949)
+.|++++|...+|.. |+|+||.+.. ....++++.++++.+||++ + ...+.-...|||||||||+
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 999999999999997 9999998742 2345677888899998863 0 1344556789999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
|||+|++|.+++||||||.||||.+.+++.+.|.+..+|||+|++||++..++. ||||++|++|++++.|++++|....
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLANN 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhccc
Confidence 999999999999999999999999999999999988889999999999999986 9999999999999999999998754
Q ss_pred C
Q 002236 856 G 856 (949)
Q Consensus 856 g 856 (949)
|
T Consensus 564 g 564 (573)
T COG4987 564 G 564 (573)
T ss_pred c
Confidence 4
No 294
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.4e-39 Score=339.87 Aligned_cols=200 Identities=21% Similarity=0.312 Sum_probs=165.8
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----HHH
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR 702 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~~~ 702 (949)
.+.|+.+.|++ ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 47899999974 25699999999999999999999999999999999999999999999999987532 123
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqR 773 (949)
.++.+||++|++.++ ..|++||+.+.... . .++..+.++.+++.+ +...++++.+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF---N----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC---C----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 457899999999888 57999999875321 1 122334455555421 012456789999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN--VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~--~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
++||+||+.+|+++||||||+|||+.+++.+++ +++..+ +|+|||++||+++++. .|||+++|++|+
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999999 566654 5899999999999986 599999999884
No 295
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.3e-39 Score=385.60 Aligned_cols=220 Identities=23% Similarity=0.459 Sum_probs=189.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. +...+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred ceEEEEEEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3599999999997421 2579999999999999999999999999999999999999999999999999975 55678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.+|+. |++|||.++. +. ..++++.++++.+++.+ +.........||||||||+
T Consensus 413 ~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~-----~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 413 RARMALVPQDPVLFAA-SVMENIRYGR-----PD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred HHhceEEccCCccccc-cHHHHHhcCC-----CC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 8999999999999987 9999998742 11 12355666677766531 0122344567999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++|||++.+|++++|||||++||+.+++.+.+.|++..+++|+|++||+++... .|||+++|++|++++.|+++++.++
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999999999999998878999999999998875 5999999999999999999998765
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 565 ~ 565 (576)
T TIGR02204 565 G 565 (576)
T ss_pred C
Confidence 4
No 296
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.8e-39 Score=340.38 Aligned_cols=194 Identities=21% Similarity=0.329 Sum_probs=167.1
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-EcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~-i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|..+. +| +.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~---~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LG---ANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cc---cccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 7775331 22 4566889999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
|+.+....++...++.. +.+.+..+|. +..++++++||||||||+++|+||+.+|+++||||||+++|+.+++.+
T Consensus 69 nl~~~~~~~~~~~~~~~---~~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 69 NARMMASLYGLDGDEFS---HFCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHHcCCCHHHHH---HHHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 99998776665433322 3344556775 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 805 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 805 ~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
++.|.+..+++++|++||++++++.+||++++|++|+++..|+.++.++.++
T Consensus 144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 144 QAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 9988664445789999999999999999999999999999999999976643
No 297
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=381.41 Aligned_cols=208 Identities=25% Similarity=0.324 Sum_probs=184.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 47999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred ccEEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 705 TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ~~~--L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
+++||+||++. +++.+|++|++.++.. ....+++++++++.+++.. ...++++.+||||||||++||+||+.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ-----EGDDEQAVRGTLGRLLFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc-----CCccHHHHHHHHHHcCCCh-hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999864 6677999999875321 1122467889999999942 36899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCHHHHHHhcC
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKARYG 856 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~~~Lk~~~g 856 (949)
+|+++||||||+|||+.+++.+++.|++. +.|||++||+++++..+|||+++|++|+++ ..|+++++.+..|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99999999999999999999999999877 359999999999999999999999999998 8899988876543
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5e-39 Score=382.95 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=181.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++||+|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------- 69 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 47999999999962 257999999999999999999999999999999999999999999999752
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCc----------------------hhHHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKG----------------------PALTQAVEESL 748 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~-------------g~~~----------------------~~~~~~v~~~L 748 (949)
..|||+||++.+++.+|++||+.+... ++ +... .+.++++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999987421 10 1110 11245688899
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHH
Q 002236 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 828 (949)
Q Consensus 749 ~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae 828 (949)
+.+|+. ..++++++|||||||||+||+||+.+|+++||||||+|||+.+++.+++.|++.+ .|||++||++++++
T Consensus 150 ~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~ 224 (556)
T PRK11819 150 DALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLD 224 (556)
T ss_pred HhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 999994 3689999999999999999999999999999999999999999999999998874 49999999999999
Q ss_pred HhcCEEEEEeCCEEE-EEcCHHHH
Q 002236 829 ALCDRLGIFVDGSLQ-CIGNPKEL 851 (949)
Q Consensus 829 ~l~drI~Im~~G~l~-~~Gs~~~L 851 (949)
.+||||++|++|+++ ..|+.++.
T Consensus 225 ~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeCCEEEEecCCHHHH
Confidence 999999999999986 78887764
No 299
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=330.40 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=195.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+|+++||+..-.+ +..++++||++++||+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ...+..
T Consensus 1 mi~a~nls~~~~G------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEeec------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 5789999998864 679999999999999999999999999999999999999999999999999865 445556
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~--~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
++-+++||+..+-...||+|-+.+...-.+...+ +..+.+++.|...++. .++.+...+|||||||||.+||.|+.
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~--~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--GLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh--hhhccchhhcCchHHHHHHHHHHHHH
Confidence 7789999998886667999999997554433333 5566689999999997 48999999999999999999999975
Q ss_pred ------CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 783 ------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 783 ------~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
++++|+||||||.||+..+..+.++.++. ++|..|+.+-||++.+..+||||++|++||+++.|+|++..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45689999999999999999999999985 67899999999999999999999999999999999998864
No 300
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-39 Score=366.15 Aligned_cols=215 Identities=24% Similarity=0.473 Sum_probs=192.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++ ++++|+++||+|++||-+||+|+|||||||++|+|.+++. .+|+|+|||+|+.+ ..+.+
T Consensus 350 ~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHh
Confidence 45999999999984 4669999999999999999999999999999999999999 99999999999976 67889
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---CcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~------~---~~~~~~~~~LSGGqKqRL 774 (949)
|+.|||+||+..||++ |+.+|+.++. . ....++|.+..++.++.+ + .....+...|||||||||
T Consensus 424 R~~Ig~VPQd~~LFnd-TIl~NI~YGn-~-----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFND-TILYNIKYGN-P-----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hhheeEeCCcccccch-hHHHHhhcCC-C-----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 9999999999999998 9999998642 1 223466777788888753 0 123455668999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
++|||++.||+|+++|||||.||.++.+++.+.+.+...|||+|++-|+++.++. ||+|+++++|+++..|+.+||.+
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999999997789999999999999986 99999999999999999999987
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=384.91 Aligned_cols=223 Identities=25% Similarity=0.387 Sum_probs=198.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~- 702 (949)
.+++++|++|.|++.. ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... .++
T Consensus 3 ~~l~~~nl~~~y~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCC--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 3699999999996421 135699999999999999999999999999999999999999999999999998652 222
Q ss_pred --h-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 703 --I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 703 --~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
. ++.+||+||+..+++.+|+.||+.+.....+...++.++++.++++.++|. +..|+++++||||||||+++|||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhcCCcccCCHHHHHHHHHHHH
Confidence 2 578999999999999999999999866555555556677889999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|+.+|++++|||||+|||+.+++.+.++|++.+ +|+|||++||++++++ .|||+++|++|+++..|+.++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999864 6999999999999987 59999999999999999998774
No 302
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.3e-39 Score=387.55 Aligned_cols=209 Identities=29% Similarity=0.491 Sum_probs=189.3
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCccHHHhhccEEEEcCCCCCCCCC
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~l 720 (949)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. ...++.+|||||++.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999999885 8999999998753 45678899999999999999
Q ss_pred CHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC------CCChhHHHHHHHHHHHcCCCcEEEEeC
Q 002236 721 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG------KYSGGMKRRLSVAISLIGNPKVVYMDE 791 (949)
Q Consensus 721 Tv~E~L~~~~~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~------~LSGGqKqRLslA~ALi~~P~vllLDE 791 (949)
||+|||.|.++++. .+.++.+++++++++.+||.+ .+|++++ .||||||||++||+||+.+|++++|||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 99999999887763 334566678999999999974 6778776 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 792 PSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 792 PTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~me-eae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
||+|||+.+++.+++.|++. ++|+|||+++|+++ ++..+|||+++|++|+++..|+++++++.+.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 99999999999999999986 45999999999995 8899999999999999999999999987654
No 303
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.6e-39 Score=332.47 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=167.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+++++|++|.|++ +.++ ++||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.++.... ++
T Consensus 1 ~l~~~~l~~~~~~------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KP 70 (195)
T ss_pred CeEEEEeeEEECC------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---hh
Confidence 3789999999963 3455 499999999999999999999999999999999999999999999885421 35
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.++|++|+..+++.+|++||+.+.....+ ..+.++++++.+++. +..++++++||||||||+++|+|++.+|+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 69999999888888999999988654432 235678889999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEE
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRL 834 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI 834 (949)
+++|||||+|||+.+++.++++|++. ++|+|||++||++++++. +|-+
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999764 568999999999998876 6654
No 304
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.9e-39 Score=382.96 Aligned_cols=219 Identities=23% Similarity=0.410 Sum_probs=189.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|+++ ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..
T Consensus 329 ~~i~~~~v~f~y~~~----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 329 GDVEFRNVTFRYPGR----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CeEEEEEEEEEcCCC----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 359999999999742 2569999999999999999999999999999999999999999999999999865 55678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++++||||++.+|+. |++|||.++. . ++..+++++++++.+++.+ +.........||||||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~----~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 405 RRQVALVSQDVVLFND-TIANNIAYGR-T----EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred HhhceEEccCcccccc-cHHHHHhcCC-C----CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 8999999999999987 9999998752 1 1223456677777777642 0112233457999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||||++.+|+|++|||||++||+.+++.+.+.|++..+++|+|++||+.+.. ..||+|++|++|+++..|+.+++.++
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999999999999888889999999999776 46999999999999999999998754
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-39 Score=342.92 Aligned_cols=199 Identities=27% Similarity=0.452 Sum_probs=179.5
Q ss_pred CcEEEEeEEEEcCCCCC--CC-ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHH
Q 002236 625 HAIISDNLRKIYPGRDG--NP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~--~~-~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~ 701 (949)
..++++||+|.|+.+.+ .. ...||+||||+|++||++||+|.||||||||-|+|+||++||+|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46899999999975421 11 258999999999999999999999999999999999999999999999999865321
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
..+..+++.++|+.+|+.. ++.++++++|||||+||+.|||||+
T Consensus 82 -----------------------------------~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -----------------------------------KEERRERVLELLEKVGLPE-EFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -----------------------------------hhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchhhhhHHHHHHHh
Confidence 3345678999999999975 6899999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCCcE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 859 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~~y 859 (949)
.+|+++++|||+|.||...+.++.+++++++ .|-|.+++|||++.+..+||||++|..|++++.|+.+++.+..-+.|
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY 205 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence 9999999999999999999999999999864 49999999999999999999999999999999999999998776666
Q ss_pred E
Q 002236 860 V 860 (949)
Q Consensus 860 ~ 860 (949)
+
T Consensus 206 T 206 (268)
T COG4608 206 T 206 (268)
T ss_pred H
Confidence 4
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.1e-39 Score=375.66 Aligned_cols=216 Identities=23% Similarity=0.304 Sum_probs=179.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCeecCc--cH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DM 700 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i~G~di~~--~~ 700 (949)
..+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++.. ..
T Consensus 258 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 357999999999963 4699999999999999999999999999999999998876 79999999987642 22
Q ss_pred HHhhccEEEEcCCCCCCC--CCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWE--TLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~--~lTv~E~L~~~~~----l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
...++++||++|++.++. ..|+++++.+... ..+....+.+++++++++.++|.+ ...++++.+|||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-hhccCchhhCCHHHHHHH
Confidence 345678999999876543 3567666543211 111112334567899999999962 267999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-cEEEEEcCCHHHHHH-hcCEEEEEeCCEEEEEc
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g-~tIIltTH~meeae~-l~drI~Im~~G~l~~~G 846 (949)
++|+||+.+|+++||||||+|||+.+++.++++|+++ +++ .|||++||++++++. +|||+++|++|+++..-
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999986 455 469999999999987 69999999999987653
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-38 Score=376.03 Aligned_cols=208 Identities=25% Similarity=0.306 Sum_probs=179.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+++++||+|.|++ ++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------G 67 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------C
Confidence 47999999999962 24699999999999999999999999999999999999999999999875 2
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCchh----------------------HHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKGPA----------------------LTQAVEESL 748 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~-------------g~~~~~----------------------~~~~v~~~L 748 (949)
..|||+||++.+++.+|++||+.+... .+ +.+..+ ..+++++++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 469999999999999999999987321 11 111111 224567788
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHH
Q 002236 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 828 (949)
Q Consensus 749 ~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae 828 (949)
+.+++. ..++++++||||||||++||+||+.+|+++||||||++||+.+++.+.+.|++.+ .|||++||+++++.
T Consensus 148 ~~~~l~---~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~ 222 (552)
T TIGR03719 148 DALRCP---PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLD 222 (552)
T ss_pred hhCCCC---cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 888884 3688999999999999999999999999999999999999999999999998763 59999999999999
Q ss_pred HhcCEEEEEeCCEEE-EEcCHHHHH
Q 002236 829 ALCDRLGIFVDGSLQ-CIGNPKELK 852 (949)
Q Consensus 829 ~l~drI~Im~~G~l~-~~Gs~~~Lk 852 (949)
.+|||+++|++|+++ +.|+..+..
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHHH
Confidence 999999999999976 778887643
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.3e-38 Score=375.94 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=181.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------- 386 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------
Confidence 347999999999963 5699999999999999999999999999999999999999999999854 2
Q ss_pred hccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
..|||+||+. .+++.+|++||+.+.....+.... ...+.++++.+++.+ ...++++++|||||||||+||+||+.
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1599999996 788899999999886544333222 234567899999952 35799999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC-CEEE-EEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~-G~l~-~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.+++.|++.+ | |||++||++++++.+|||+++|++ |++. ..|+.+++.+
T Consensus 463 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 463 GGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999998874 4 899999999999999999999996 7887 5788877654
No 309
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.4e-38 Score=340.56 Aligned_cols=190 Identities=25% Similarity=0.333 Sum_probs=162.7
Q ss_pred ceeeeeEEEEe-----CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCC
Q 002236 646 VAVNGLSLALP-----SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (949)
Q Consensus 646 ~al~~lSl~v~-----~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~l 720 (949)
+.+++++|+++ +||++||+||||||||||+++|+|+++|++|+|.++|. .++|+||+...+..+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCC
Confidence 46777777776 79999999999999999999999999999999999984 589999998877789
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHH
Q 002236 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 800 (949)
Q Consensus 721 Tv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~s 800 (949)
|++|++.+.....+ . .....+++++.++|. +..++++.+||||||||++||+||+.+|+++||||||+|||+.+
T Consensus 77 tv~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 77 TVRDLLSSITKDFY--T--HPYFKTEIAKPLQIE--QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred CHHHHHHHHhhhcc--c--cHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999976533221 1 123467889999996 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE--EEcCHHHHH
Q 002236 801 RNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIGNPKELK 852 (949)
Q Consensus 801 r~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~--~~Gs~~~Lk 852 (949)
++.++++|++.. .|+|||++||++++++.+|||+++|+++..+ ..++++.++
T Consensus 151 ~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 151 RLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999863 4899999999999999999999999765433 445565543
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.8e-38 Score=320.28 Aligned_cols=164 Identities=27% Similarity=0.385 Sum_probs=148.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
|+++|+++.|++ ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~ 65 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------ED 65 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ce
Confidence 468999999963 246999999999999999999999999999999999999999999999873 57
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||++|++.++ .+|++||+.+. .+.+||||||||+++||||+.+|++
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998765 57999998752 2468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
++|||||+|||+.+++.+.++|++. ++|||++||+++++ .+|||+++|++|.
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9999999999999999999999876 68999999999876 5899999998863
No 311
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-39 Score=391.13 Aligned_cols=225 Identities=27% Similarity=0.496 Sum_probs=199.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|+.| |+.++++|+||+|++||.+||+||+||||||.+.+|-.++.|++|+|.|||+|+++ +.+.+|
T Consensus 987 ~I~~~~V~F~YPsR---P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCC---CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 59999999999975 57899999999999999999999999999999999999999999999999999986 788999
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~-------~--~~~~~~~~~~LSGGqKqRLs 775 (949)
++||.|.|+|.||.. |++||+.++ ..+ .+ ++++.++++..+.. + +.....+..+||||||||++
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYG-SEE-VS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhcc-CCC-CC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 999999999999997 999999976 222 33 44556666665532 1 12344556689999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
||||++.||+||||||.||+||.++.|.+.+.|.++..|||.|++.|.+..+.. ||.|+|+++|++++.|+.++|.++-
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999975 9999999999999999999999977
Q ss_pred CCcEEE
Q 002236 856 GGSYVF 861 (949)
Q Consensus 856 g~~y~l 861 (949)
|..|.|
T Consensus 1216 G~Y~~L 1221 (1228)
T KOG0055|consen 1216 GIYFRL 1221 (1228)
T ss_pred CchHHH
Confidence 665543
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.7e-38 Score=343.29 Aligned_cols=203 Identities=21% Similarity=0.326 Sum_probs=169.1
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
....|+++|+++. + +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~-~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV-G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------- 98 (282)
T ss_pred CCCeEEEEEEEEe-c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------
Confidence 3456999999985 2 3599999999999999999999999999999999999999999999988
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqR 773 (949)
.+||+||++.+++. |++||+.+..... . .++.+.++.+++.+ ....++.+.+||||||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSYD---E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhcccccC---H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 39999999988885 9999998642211 1 11222333333321 012345578999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L-~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+++|+||+.+|+++||||||+|||+.+++.+.+.+ ++.++++|||++||+++++. .|||+++|++|+++..|+++++.
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999865 55667899999999999985 79999999999999999999886
Q ss_pred Hh
Q 002236 853 AR 854 (949)
Q Consensus 853 ~~ 854 (949)
+.
T Consensus 247 ~~ 248 (282)
T cd03291 247 SL 248 (282)
T ss_pred hc
Confidence 53
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.6e-38 Score=373.10 Aligned_cols=209 Identities=24% Similarity=0.342 Sum_probs=180.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|++++ +
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------- 384 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------
Confidence 347999999999963 4699999999999999999999999999999999999999999999844 2
Q ss_pred hccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
..|||+||+. .+++.+|++|++.+.....+.... +..+.++++.+++.+ ...++++.+|||||||||++|+||+.
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 1599999986 588899999999886543333222 234567899999952 25689999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC-CEEE-EEcCHHHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 853 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~-G~l~-~~Gs~~~Lk~ 853 (949)
+|+++||||||+|||+.+++.++++|++.. + |||++||++++++.+|||+++|++ |+++ ..|+.++.++
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999874 3 899999999999999999999997 5876 5677776654
No 314
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.9e-38 Score=327.48 Aligned_cols=200 Identities=28% Similarity=0.450 Sum_probs=183.9
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
.+.||+||||++++||.+||+|+||||||||+|+|+|.++||+|+|.++|.--. -+--.+| +-+++|++
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~----li~lg~G-------f~pelTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP----LIELGAG-------FDPELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh----hhhcccC-------CCcccchH
Confidence 578999999999999999999999999999999999999999999999996321 0111223 34569999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 803 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~ 803 (949)
||+.+.+.+.|+++++++++++++.+.-+|. ++.|+++++||.||+-||++|+|...+|+|||+||-.+--|+.-+++
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG--~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELG--DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHH--HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 9999999999999999999999999999997 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 804 LWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 804 l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
-.+.+.+. ++++|||++|||++.+.++|||++.|++|+++..|++++....|.
T Consensus 186 ~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 186 CLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 99999987 778999999999999999999999999999999999999988764
No 315
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-38 Score=410.92 Aligned_cols=220 Identities=18% Similarity=0.346 Sum_probs=192.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|++. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+.+ +.+.+
T Consensus 1233 g~I~f~nVsf~Y~~~----~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPG----LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CcEEEEEEEEEECCC----CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 359999999999632 2579999999999999999999999999999999999999999999999999975 66789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|+|+||++.||+. |+||||.++. . ..++++.++++..++.+ +........+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999999997 9999998642 1 22456677777776642 0122344568999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+||+||||||+||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1381 aLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1381 SLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999986 999999999999999999999876
Q ss_pred cCC
Q 002236 855 YGG 857 (949)
Q Consensus 855 ~g~ 857 (949)
.++
T Consensus 1460 ~~~ 1462 (1495)
T PLN03232 1460 DTS 1462 (1495)
T ss_pred CCC
Confidence 543
No 316
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-38 Score=409.05 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=191.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|++. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+++ +.+.+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 369999999999642 2469999999999999999999999999999999999999999999999999976 67889
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||++||++.||+. |+||||..+. . ..++++.++++..++.+ +........+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---C----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999997 9999997642 1 22456677777776631 0122334458999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998889999999999999986 999999999999999999999876
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 1463 ~ 1463 (1622)
T PLN03130 1463 E 1463 (1622)
T ss_pred C
Confidence 3
No 317
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.8e-38 Score=404.82 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=188.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---------------------
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--------------------- 684 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p--------------------- 684 (949)
.|+++||++.|+++ +++++|+|+||+|++||++||+|++||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~---~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR---PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCC---CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 59999999999753 235799999999999999999999999999999999999998
Q ss_pred ---------------------------------CcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHh
Q 002236 685 ---------------------------------TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 730 (949)
Q Consensus 685 ---------------------------------tsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~ 730 (949)
++|+|+++|.|++. +.+.+|++||||||++.||+. |++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 69999999999976 677899999999999999975 9999999852
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHH
Q 002236 731 RLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 801 (949)
Q Consensus 731 ~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr 801 (949)
. +..+++++++++..++.+ +.........||||||||++|||||+.+|+|||||||||+||+.+.
T Consensus 1321 ~------~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E------DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C------CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1 122455677777766532 0122334557999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeC----CEEE-EEcCHHHHHHh
Q 002236 802 NNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD----GSLQ-CIGNPKELKAR 854 (949)
Q Consensus 802 ~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~----G~l~-~~Gs~~~Lk~~ 854 (949)
+.+.+.|.+.+ +++|+|++||+++.++. ||+|++|++ |+++ +.|+.++|.++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhc
Confidence 99999999873 69999999999998865 999999999 9965 89999999863
No 318
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.3e-38 Score=338.98 Aligned_cols=200 Identities=21% Similarity=0.328 Sum_probs=171.2
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-----------EcCeecCc
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 698 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~-----------i~G~di~~ 698 (949)
.||+|+|++ .+.+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 4 ~~~~~~y~~-----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGP-----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecC-----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 478999963 246999999 4999999999999999999999999999999999996 78888754
Q ss_pred cHHHhh---ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 699 DMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 699 ~~~~~r---~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
...+.+ ..++|++|+..+++. ++.+++.... .....++.+.++++.+|+. +..++.+.+||||||||++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELR--HVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 322222 248999999888884 8888877642 2234456789999999996 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
+|+||+.+|++++|||||+|||+.+++.++++|++++ +|+|||++||++++++.+|||+++|+ |++.+
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 9999999999999999999999999999999999864 58999999999999999999999994 65654
No 319
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=340.23 Aligned_cols=234 Identities=26% Similarity=0.429 Sum_probs=210.7
Q ss_pred CCcEEEEeEEEEcCCCCCC-----CccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 624 SHAIISDNLRKIYPGRDGN-----PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~-----~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
...++.++++..|+-++|- ....||+++||++++||.+||+|.+|||||||=.+|.++++++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3468899999999765431 1367999999999999999999999999999999999999887 999999999963
Q ss_pred ----cHHHhhccEEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 699 ----DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 699 ----~~~~~r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g--~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
.+..+|++|-+|||++ .|-|.|||.|-+.=..++++ .+.++.++++.++|+++||.. .-+++++.++||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-~~r~RYPhEFSGGQ 431 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-ATRNRYPHEFSGGQ 431 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-hHhhcCCcccCcch
Confidence 4566889999999997 58999999999988777764 567788899999999999985 67899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|||++||||++.+|++++||||||+||..-+.++.++|+++ +.|-+.+++|||+.-+.++||+++||++|++++.|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 99999999999999999999999999999999999999986 4589999999999999999999999999999999999
Q ss_pred HHHHHhcCCcE
Q 002236 849 KELKARYGGSY 859 (949)
Q Consensus 849 ~~Lk~~~g~~y 859 (949)
+++.+.....|
T Consensus 512 ~~if~~P~~~Y 522 (534)
T COG4172 512 EAVFANPQHEY 522 (534)
T ss_pred HHHhcCCCcHH
Confidence 99988765555
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.1e-37 Score=369.05 Aligned_cols=200 Identities=27% Similarity=0.486 Sum_probs=173.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|+++ ++++++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 320 ~i~~~~v~f~y~~~----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCC----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 59999999999742 2479999999999999999999999999999999999999999999999999975 567789
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
+++||+||++.+|+. |++||+.+... ...++++.++++..++.+ +........+||||||||++
T Consensus 396 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIRLARP------DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred hheEEEcCCCcccCc-CHHHHHhccCC------CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999999985 99999987531 112356677777777642 01223456689999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im 837 (949)
+||||+.+|++++|||||++||+.+.+.+.+.|++.++++|+|++||+++.+. .||||++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999999999998888999999999999985 59999875
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=371.37 Aligned_cols=205 Identities=24% Similarity=0.396 Sum_probs=179.5
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 457999999999963 56999999999999999999999999999999999999999999999741
Q ss_pred hccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 704 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 704 r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++||++|+. .+.+..|+.+++.- . .....++.+.++|+.+++.. ...++++++|||||||||+||+||+
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~---~---~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLAR---L---APQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHH---h---CchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2699999974 45666788887642 1 12233567889999999952 3678999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~~~Lk~ 853 (949)
.+|++|||||||+|||+.+++.+.++|++. +| |||++|||+++++.+|||+++|++|+++ ..|+.++...
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999887 34 9999999999999999999999999997 8899988743
No 322
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=331.63 Aligned_cols=197 Identities=24% Similarity=0.447 Sum_probs=177.8
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----HHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+++|+.+.-.+++|.|++||||||++|||+|+.+|++|.|.++|.-+... ...-+++|||+||+..|||.+||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 57888888789999999999999999999999999999999999876432 2345688999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
||.|.... ......+++.+.+|++| ..++++.+|||||||||+|+|||+.+|++|+||||.+.||..-++++
T Consensus 96 NL~YG~~~------~~~~~fd~iv~lLGI~h--LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 96 NLRYGMWK------SMRAQFDQLVALLGIEH--LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred chhhhhcc------cchHhHHHHHHHhCcHH--HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 99985321 13557788999999985 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC--CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 805 WNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 805 ~~~L~~~~~--g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
.-.|+++++ +.-|+.+||+++|+.+++|||++|++|++++.|..+++.++
T Consensus 168 lpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 168 LPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999999753 78999999999999999999999999999999999998654
No 323
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.5e-37 Score=401.41 Aligned_cols=217 Identities=18% Similarity=0.305 Sum_probs=191.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|+++ ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+.+ +.+.+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999976 67789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---CcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~------~---~~~~~~~~~LSGGqKqRL 774 (949)
|++||++||++.||+. |+||||..+. . ..++++.++++.+++.+ + ........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---Q----YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---C----CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999997 9999997442 1 22455677777777642 0 112233457999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+||+||||||+||+++.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999886 999999999999999999999876
No 324
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.8e-37 Score=400.51 Aligned_cols=217 Identities=21% Similarity=0.382 Sum_probs=191.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++++|++. ...+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+.+ +.+++
T Consensus 1307 G~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred CeEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999976 67789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Cccc----ccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVAD----KQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~-----~~~~----~~~~~LSGGqKqRL 774 (949)
|++|||+||++.||+. |+||||..+. +..++++.++++.+++.+. +-.| ....+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 9999999999999997 9999996532 1224678888888887520 0123 23457999999999
Q ss_pred HHHHHHcCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~-P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|||||+++ |+|||||||||+||+.+.+.+.+.|++..+++|||+++|.++.+.. ||||++|++|++++.|++++|.+
T Consensus 1455 aLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999995 8999999999999999999999999988889999999999998875 99999999999999999999986
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
+
T Consensus 1534 ~ 1534 (1560)
T PTZ00243 1534 N 1534 (1560)
T ss_pred C
Confidence 5
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-38 Score=309.31 Aligned_cols=201 Identities=26% Similarity=0.429 Sum_probs=184.7
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 722 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv 722 (949)
+.++|+++||++++||..+|.||+|||||||+|+++-+.+||+|++++.|+++.+ ..+..|++++||.|.+.||++ ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 4679999999999999999999999999999999999999999999999999976 678899999999999999998 99
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHH
Q 002236 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 802 (949)
Q Consensus 723 ~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~ 802 (949)
++|+.|.-+++.... .+.+..++|+++++.+ ...++.+.+||||+|||++++|-|.--|+||+||||||+||+.+++
T Consensus 94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~-~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr 170 (223)
T COG4619 94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170 (223)
T ss_pred hhccccchHHhccCC--ChHHHHHHHHHcCCch-hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHH
Confidence 999999888875432 4667889999999985 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 803 NLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 803 ~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
.+-++|.++ .++++++.+|||-+++.+.+||++-+..|++ |+.+++
T Consensus 171 ~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~---~~~~e~ 218 (223)
T COG4619 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218 (223)
T ss_pred HHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc---cccccc
Confidence 999999885 4689999999999999999999999999954 555554
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.8e-37 Score=366.19 Aligned_cols=196 Identities=23% Similarity=0.298 Sum_probs=174.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------ 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------ 399 (590)
T ss_pred eEEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------
Confidence 47999999999963 25999999999999999999999999999999999999999999885
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
.++||+||+..+++.+||+|++.+..... . ....++++++.++|. +..++++.+|||||||||+||+||+.+|
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLE--RLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 15999999988888999999998753211 1 123568899999996 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
+++||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+|||+++|+ |++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999986 3 48999999999999999999999996 57766665
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.7e-37 Score=397.94 Aligned_cols=210 Identities=22% Similarity=0.398 Sum_probs=177.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE-cCeecCc-cHHHh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDIRT-DMDRI 703 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i-~G~di~~-~~~~~ 703 (949)
.|+++||++.|+++ +++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++.. +...+
T Consensus 382 ~I~~~nVsf~Y~~~---~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR---KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCC---CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 59999999999753 2357999999999999999999999999999999999999999999999 5688864 45668
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhh-cCC-----------------------------------------------
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KNL----------------------------------------------- 735 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l-~g~----------------------------------------------- 735 (949)
|++|||+||++.||+. |++||+.+.... ++.
T Consensus 459 r~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 8999999999999985 999999985310 000
Q ss_pred ---CchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHH
Q 002236 736 ---KGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 803 (949)
Q Consensus 736 ---~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~ 803 (949)
.....++++.++++.+++.+ +...++...+||||||||++|||||+.+|+||||||||++||+.+++.
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 00112356777888887642 011356678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 804 LWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 804 l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
+.+.|++.+ +|+|+|++||+++.++ .||||++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 999999874 5899999999999985 79999999986
No 328
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-36 Score=368.17 Aligned_cols=207 Identities=21% Similarity=0.288 Sum_probs=179.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 457999999999963 56999999999999999999999999999999999999999999998 5432
Q ss_pred hccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 704 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 704 r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.|||++|+. .+++.+||.|++.+........ .....+.++++.+++.. +..++++++|||||||||+||+||+.
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHP-KRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCH-HHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 599999985 6889999999998743211111 12456788999999952 35789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe-CCEEEE-EcCHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-DGSLQC-IGNPKEL 851 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~-~G~l~~-~Gs~~~L 851 (949)
+|++|||||||+|||+.+++.+.++|++. +.|||++|||+++++.+|||+++|+ +|++.. .|+..+-
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999876 3599999999999999999999998 899874 6777665
No 329
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.4e-37 Score=362.84 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
.|+++|+++.|++ ++.+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 5999999999973 2469999999999999999999999999999999999999999999999999975 566788
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc-----cCCCCChhHHHHHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK-----QAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~-----~~~~LSGGqKqRLslA~A 779 (949)
+++||+||++.+|+. |++|| + ....++.+++.++.+++.+ ..+. ...+||||||||+++|||
T Consensus 397 ~~i~~v~q~~~lf~~-ti~~n--------~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQ-LLGPE--------G--KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHH-hhccc--------c--CchHHHHHHHHHHHcCCch--hhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999886 77776 1 1233567788899998863 2221 145899999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
++.+|+++||||||+|||+.+++.+++.+.+. + +|+|+|++||+++.+. .||||++|++|++++.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998764 3 5899999999997765 6999999999999876
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-37 Score=364.88 Aligned_cols=187 Identities=27% Similarity=0.507 Sum_probs=162.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.|+++|+++.|++ ++.+|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.|+.+-.+.+|+
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHh
Confidence 5999999999974 24599999999999999999999999999999999999999999999999999755667889
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLsl 776 (949)
+|||+||++.+|++ |++|||.++. ++..+++++++++..++.+ +.........||||||||+++
T Consensus 409 ~i~~V~Q~~~lF~~-TI~eNI~~g~------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 409 RISVFAQDAHLFDT-TVRDNLRLGR------PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred heEEEccCcccccc-cHHHHHhccC------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 99999999999998 9999998852 1223456777888877642 011123345799999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCH
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 824 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~m 824 (949)
||||+.+|+|++||||||+||+.+.+.+.+.|.+..+++|+|++||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999888899999999974
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1e-36 Score=363.14 Aligned_cols=207 Identities=18% Similarity=0.275 Sum_probs=177.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++.++ .++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 35999999999975211 12469999999999999999999999999999999999999999999999999975 45678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc------cCCCCChhHHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 777 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~------~~~~LSGGqKqRLslA 777 (949)
|+.++|++|++.+|++ |+++|+. .+..+++++++++.+++.+ ..++ ...+||||||||++||
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~--~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIAD--KVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCch--hhcccccccCCcccCCHHHHHHHHHH
Confidence 8999999999999986 7888841 2234567888999999863 3222 2367999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~-~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
||++.+|+++||||||++||+.+++.+.+.+. .. .+|+|+|++||+++..+ .||+|++|++|++++.
T Consensus 483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998764 44 46899999999998775 6999999999999864
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=363.37 Aligned_cols=206 Identities=19% Similarity=0.291 Sum_probs=170.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|.++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------- 64 (638)
T ss_pred CEEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------
Confidence 4789999999974 579999999999999999999999999999999999999999999998842
Q ss_pred cEEEEcCCCCCCCCCCHHHHHH-----------------------HHhhhc----CCCchhHHHHHHHHHHHcCCCCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLL-----------------------FYGRLK----NLKGPALTQAVEESLKSVNLFHGGV 758 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~-----------------------~~~~l~----g~~~~~~~~~v~~~L~~l~L~~~~~ 758 (949)
.+||++|+...+. .|+.+.+. .+..+. .....+.+++++++++.+|+.+ ..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~ 142 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQ 142 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hh
Confidence 3788887643322 35444321 111111 1122234568899999999962 35
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 759 ~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
.++++++|||||||||+||+||+.+|+||||||||+|||+.++..+.+.|++. +.|||++|||+++++.+|||+++|+
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999876 4699999999999999999999999
Q ss_pred CCEEE-EEcCHHHH
Q 002236 839 DGSLQ-CIGNPKEL 851 (949)
Q Consensus 839 ~G~l~-~~Gs~~~L 851 (949)
+|++. ..|+....
T Consensus 221 ~G~i~~~~g~~~~~ 234 (638)
T PRK10636 221 QQSLFEYTGNYSSF 234 (638)
T ss_pred CCEEEEecCCHHHH
Confidence 99996 46766543
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2e-36 Score=300.07 Aligned_cols=144 Identities=31% Similarity=0.500 Sum_probs=136.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhcc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 706 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~ 706 (949)
++++|+++.|++ ..+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|. +.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~ 64 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VK 64 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EE
Confidence 468999999963 46999999999999999999999999999999999999999999999984 47
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 707 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 707 iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
++|+|| ||+|||||+++||||+.+|++
T Consensus 65 i~~~~~-----------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEcc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
++|||||+|||+.+++.+++.|+++ ++|||++||+++++..+|||+++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4799999999999999999999999985
No 334
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-36 Score=392.34 Aligned_cols=210 Identities=19% Similarity=0.269 Sum_probs=183.8
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCC
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~----~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~ 719 (949)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.+||++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 477999999999999999999999999999999999986 5799999999998854334456779999999999999
Q ss_pred CCHHHHHHHHhhhcC-------CCchhHHHH-HHHHHHHcCCCCCCccccc-----CCCCChhHHHHHHHHHHHcCCCcE
Q 002236 720 LTGREHLLFYGRLKN-------LKGPALTQA-VEESLKSVNLFHGGVADKQ-----AGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 720 lTv~E~L~~~~~l~g-------~~~~~~~~~-v~~~L~~l~L~~~~~~~~~-----~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+||+|+|.|.++++. .++++..++ ++++++.+||.+ .+|++ ++.|||||||||+||+||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH--TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc--ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999877652 223332333 567899999974 55554 578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~m-eeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
++|||||+|||+.++..+++.|+++ + .|+|||+++|+. +++..++||+++|++|+++..|+++++++.+
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 9999999999999999999999986 3 389999999996 7899999999999999999999999997665
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=311.14 Aligned_cols=221 Identities=25% Similarity=0.350 Sum_probs=186.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh-
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r- 704 (949)
++.+.|++|.+.+.. ..++.|++++||+|.+||.+.++|.||||||||++.|+|-++||+|+|.|+|.|+.+....-|
T Consensus 1 Mi~~~~~~~~f~~g~-~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGT-PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCC-hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 366788999986532 236889999999999999999999999999999999999999999999999999987544333
Q ss_pred ccEEEEcCCC--CCCCCCCHHHHHHHHhhh---cCCCc---hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 002236 705 TSMGVCPQED--LLWETLTGREHLLFYGRL---KNLKG---PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 705 ~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l---~g~~~---~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLsl 776 (949)
..++-|+|++ ...+.||++||+.+...- +|+.. ...++...+.++.+++.-+...+.+++-|||||||-|++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 5678899997 579999999999985432 23332 223444556677766543357889999999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
++|.++.|+|++|||-|++|||.....+++.-.++ +.+-|.+|+||+|+.|-.+.+|.++|++|+|+.+-+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999998884 447899999999999999999999999999987543
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.3e-36 Score=362.07 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=175.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++|+++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 47999999999963 24699999999999999999999999999999999999999999999875 2
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHh-h-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYG-R-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~-~-l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.+|||++|+. .+.+++.++..+.. . ..+. .++++.++|+.+++.+ ...++++.+|||||||||+||+||+.
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~-~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCCh-HHhcCCccccCHHHHHHHHHHHHHhc
Confidence 4699999985 34556666644321 2 1121 2456889999999962 36789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCHHHHHHh
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKAR 854 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~~~Lk~~ 854 (949)
+|++|||||||+|||+.+++.+.+.|.+. +| |||++||++++++.+|||+++|.+|+++ ..|+.++.++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999988765 34 9999999999999999999999999998 78888876553
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.1e-36 Score=389.56 Aligned_cols=216 Identities=22% Similarity=0.363 Sum_probs=189.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++||+++|++. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++ ++|+|+|+|.|+.. ..+.+
T Consensus 1216 g~I~f~nVs~~Y~~~----~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CeEEEEEEEEEeCCC----CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999997 89999999999976 56789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Ccccc----cCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVADK----QAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~-----~~~~~----~~~~LSGGqKqRL 774 (949)
|++|+|+||++.||+. |+||||..+. ...++++.++++.++|.+. +-.|. ....||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999997 9999996542 1235677888888887420 01222 2347999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||++||.++.+.. ||||++|++|++++.|++++|.++
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988889999999999998876 999999999999999999999864
No 338
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-36 Score=328.93 Aligned_cols=235 Identities=24% Similarity=0.360 Sum_probs=207.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCeecCc-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-----tsG~I~i~G~di~~- 698 (949)
..+.++||+..|+..+ ..+.||++|||+|++||.+||+|.+|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 5 ~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 4689999999997543 357899999999999999999999999999999999999875 37899999999853
Q ss_pred ---cHHHhh-ccEEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhH
Q 002236 699 ---DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 770 (949)
Q Consensus 699 ---~~~~~r-~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l-~g~~~~~~~~~v~~~L~~l~L~~~-~~~~~~~~~LSGGq 770 (949)
....+| .+||++||++ .|.|-.|+...+.=..++ +|+++++.++++.++|+.+|+.+. ...+.++.+|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 334455 4799999998 577888888777654444 578889999999999999999752 34588999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|||+.||+||+.+|++||.||||++||..-+.++.++|++++ .|.+++++|||+.-+.+++|||+||.+|++++.|+.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 999999999999999999999999999999999999999863 499999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEE
Q 002236 849 KELKARYGGSYVF 861 (949)
Q Consensus 849 ~~Lk~~~g~~y~l 861 (949)
+.+.+...+.|+-
T Consensus 243 ~~lF~~PqHpYTr 255 (534)
T COG4172 243 ETLFAAPQHPYTR 255 (534)
T ss_pred HHHhhCCCChHHH
Confidence 9999887777753
No 339
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=315.50 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=188.5
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cH-
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM- 700 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~- 700 (949)
+...|+++|++.+|++ |++|+|||++|++||-.+|+||||||||||+++++|.+.|++|.+.+.|+...+ +.
T Consensus 28 ~~~li~l~~v~v~r~g------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEECC------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 3457999999999974 789999999999999999999999999999999999999999999999999854 33
Q ss_pred HHhhccEEEEcC--CCCCCCCCCHHHHHHH--Hhhh--cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 701 DRIYTSMGVCPQ--EDLLWETLTGREHLLF--YGRL--KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 701 ~~~r~~iG~~pQ--~~~L~~~lTv~E~L~~--~~~l--~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
.++|++||+|.- +..+.+..+|+|-+.- |+.+ +. ...++..+++..+++.+|+.+ .+|++..+||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHH
Confidence 789999999975 3444556778876642 2222 11 234566778999999999974 8999999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~---~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
+-|||||+.+|++||||||++|||..+|..+.+.|.+.. .+.++|++||+.||+-...+++..+++|+++..|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999998852 37899999999999999999999999999998774
No 340
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-37 Score=339.30 Aligned_cols=221 Identities=25% Similarity=0.447 Sum_probs=191.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|.. ++++++||||++.+|+.++|+||+||||||++|+|-.++..++|.|.|||+||+. ....+
T Consensus 536 G~i~fsnvtF~Y~p-----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP-----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred CeEEEEEeEEecCC-----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 46999999999964 5889999999999999999999999999999999999999999999999999986 56779
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-------CCCCCCcc---cccCCCCChhHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-------NLFHGGVA---DKQAGKYSGGMKRR 773 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l-------~L~~~~~~---~~~~~~LSGGqKqR 773 (949)
|++||++||+..||++ |+..|+++. +.. ...+++.++.+.. ++.+ ++. ..+.-+||||||||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIrya-k~~-----AsneevyaAAkAA~IHdrIl~fPe-gY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYA-KPS-----ASNEEVYAAAKAAQIHDRILQFPE-GYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeec-CCC-----CChHHHHHHHHHhhHHHHHhcCch-hhhhhhhhcccccCCcchhh
Confidence 9999999999999998 999999863 322 1123333333333 3332 222 23445799999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|+|||+++.+|.+++|||.||+||....|.+...|.+...+||-|++.|.+..+-. +|.|.++++|+|++.|+.+||.+
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999865 99999999999999999999999
Q ss_pred hcCCcE
Q 002236 854 RYGGSY 859 (949)
Q Consensus 854 ~~g~~y 859 (949)
+-|+.|
T Consensus 762 rdgG~Y 767 (790)
T KOG0056|consen 762 RDGGAY 767 (790)
T ss_pred ccCCcH
Confidence 877766
No 341
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.4e-36 Score=386.68 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=183.6
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCccHHHhhccEEEEcCCCCCCCCC
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~l 720 (949)
++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence 467999999999999999999999999999999999999998 999999999885422 267899999999999999
Q ss_pred CHHHHHHHHhhhcCCC----------chhH------------------------HHHHHHHHHHcCCCCC---CcccccC
Q 002236 721 TGREHLLFYGRLKNLK----------GPAL------------------------TQAVEESLKSVNLFHG---GVADKQA 763 (949)
Q Consensus 721 Tv~E~L~~~~~l~g~~----------~~~~------------------------~~~v~~~L~~l~L~~~---~~~~~~~ 763 (949)
||+|+|.|.+++++.. .++. +..++++++.+||.+. ...|+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999988776421 1110 1135779999999631 1236678
Q ss_pred CCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCH-HHHHHhcCEEEEEeCC
Q 002236 764 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFVDG 840 (949)
Q Consensus 764 ~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~m-eeae~l~drI~Im~~G 840 (949)
+.|||||||||+||++|+++|++++|||||+|||+.++.++.+.|++. + .|+|||+++|+. +++..+||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 899999999999999999999999999999999999999999999986 4 489999999996 6999999999999999
Q ss_pred EEEEEcCHHHHHHhcC
Q 002236 841 SLQCIGNPKELKARYG 856 (949)
Q Consensus 841 ~l~~~Gs~~~Lk~~~g 856 (949)
+++..|+.++++..|.
T Consensus 415 ~ivy~G~~~~~~~yF~ 430 (1470)
T PLN03140 415 QIVYQGPRDHILEFFE 430 (1470)
T ss_pred eEEEeCCHHHHHHHHH
Confidence 9999999999986553
No 342
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.9e-36 Score=297.45 Aligned_cols=228 Identities=25% Similarity=0.345 Sum_probs=202.1
Q ss_pred cEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 626 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~---~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
.++++||+|.|..+.+ +....||+.|||++++|+..|++|.||||||||.|||+|+++||+|+|.+||+.+....-.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 5789999999975432 2346799999999999999999999999999999999999999999999999998653333
Q ss_pred h-hccEEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 703 I-YTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 703 ~-r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~-g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
. .++|-+++|++ .+-|.+.+.+-|....++. .+...+..+++.+.|+.+||.+ ++++-++..||-||||||++||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P-dhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc-cccccchhhcCchhHHHHHHHH
Confidence 3 37899999997 4778888888888776654 4556667788999999999986 7999999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||+.+|+|+|.||..++||...|.++.++..++ +.|.+.|.++.++..+..++|.|+||++|++++.|+++++...
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 999999999999999999999999999998775 5599999999999999999999999999999999999998754
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.9e-35 Score=354.55 Aligned_cols=204 Identities=22% Similarity=0.247 Sum_probs=168.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|.++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------- 66 (635)
T ss_pred EEEEeeEEEEeCC------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------
Confidence 6899999999973 569999999999999999999999999999999999999999999998731
Q ss_pred cEEEEcCCCCCCCCCCHHHH------------------------------HHHHhhhc----CCCchhHHHHHHHHHHHc
Q 002236 706 SMGVCPQEDLLWETLTGREH------------------------------LLFYGRLK----NLKGPALTQAVEESLKSV 751 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~------------------------------L~~~~~l~----g~~~~~~~~~v~~~L~~l 751 (949)
.+++++|.+......++.++ +..+..+. .....+.++++.++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 25666665432222344433 22222211 111223456789999999
Q ss_pred CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhc
Q 002236 752 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 831 (949)
Q Consensus 752 ~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~ 831 (949)
|+. .++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+.+.|++.+ .|||++|||+++++.+|
T Consensus 147 gl~----~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~ 220 (635)
T PRK11147 147 GLD----PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMA 220 (635)
T ss_pred CCC----CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhc
Confidence 995 388999999999999999999999999999999999999999999999998874 59999999999999999
Q ss_pred CEEEEEeCCEEEE-EcCHHHH
Q 002236 832 DRLGIFVDGSLQC-IGNPKEL 851 (949)
Q Consensus 832 drI~Im~~G~l~~-~Gs~~~L 851 (949)
|||++|++|+++. .|+..+.
T Consensus 221 d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 221 TRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CeEEEEECCEEEEecCCHHHH
Confidence 9999999999984 5876653
No 344
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-35 Score=355.40 Aligned_cols=226 Identities=31% Similarity=0.485 Sum_probs=201.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEcCeecCccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p---tsG~I~i~G~di~~~~~~ 702 (949)
.+..++++..-+++.+ ..+.+|+|||.++++||+.||+||+|||||||+++|+|-... .+|+|.+||+.. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhh
Confidence 4667788877765322 358899999999999999999999999999999999999874 899999999643 3456
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC-----CCChhHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-----KYSGGMKRRL 774 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~-----~LSGGqKqRL 774 (949)
.++..||+.|+|.+++.+||+|+|.|.++++- .+.++.+++|+++++++||. ..+|..++ .+||||||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~--~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE--KCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh--hhccceecCCCCCccccchhhHH
Confidence 78899999999999999999999999998863 35578889999999999997 47888886 5999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~me-eae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
++|.-|+.||+|++|||||+|||..+..++.++|+++ ++|||||+|=|... ++-.+-|++++|.+|+.+..|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 9999999999999999999999999999999999985 56999999999986 888899999999999999999999887
Q ss_pred HhcC
Q 002236 853 ARYG 856 (949)
Q Consensus 853 ~~~g 856 (949)
+-+.
T Consensus 260 ~ff~ 263 (613)
T KOG0061|consen 260 EFFS 263 (613)
T ss_pred HHHH
Confidence 6553
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-35 Score=303.26 Aligned_cols=146 Identities=27% Similarity=0.390 Sum_probs=133.6
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEE
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~ 709 (949)
.||+|.|++ +.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +||
T Consensus 4 ~~l~~~~~~------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~ 65 (177)
T cd03222 4 PDCVKRYGV------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVY 65 (177)
T ss_pred CCeEEEECC------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEE
Confidence 589999973 5788885 9999999999999999999999999999999999999999853 789
Q ss_pred EcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 002236 710 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 789 (949)
Q Consensus 710 ~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllL 789 (949)
+||+.. ||||||||+++|+||+.+|++++|
T Consensus 66 ~~q~~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 66 KPQYID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EcccCC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988542 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHh-cCC-cEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Q 002236 790 DEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEALCDRLGIFVDGSLQ 843 (949)
Q Consensus 790 DEPTsGLDp~sr~~l~~~L~~~-~~g-~tIIltTH~meeae~l~drI~Im~~G~l~ 843 (949)
||||+|||+.+++.+.+.|++. +++ +|||++||++++++.+|||+++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999886 454 89999999999999999999999987543
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1e-35 Score=355.46 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=166.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-----------EcCeecCc
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 698 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~-----------i~G~di~~ 698 (949)
++++++|++ +..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|.++..
T Consensus 77 ~~~~~~yg~-----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 77 EEPVHRYGV-----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred cCceEEecC-----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHH
Confidence 347899974 246999999 9999999999999999999999999999999999997 89998864
Q ss_pred cHHHh---hccEEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 002236 699 DMDRI---YTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 772 (949)
Q Consensus 699 ~~~~~---r~~iG~~pQ~~~L~~~---lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq 772 (949)
...++ +.++++.+|.....+. .||+|++... +..++++++++.++|. ...++.+.+|||||||
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLE--NILDRDISELSGGELQ 219 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHH
Confidence 32222 2346777775444333 2999998642 2346789999999996 4789999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
||+||+||+.+|+++||||||+|||+.+++.++++|+++++|+|||++||++++++.+|||+.+|.+|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999998644999999999999999999999999873
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-35 Score=291.84 Aligned_cols=154 Identities=38% Similarity=0.709 Sum_probs=143.1
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccE
Q 002236 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 707 (949)
Q Consensus 629 v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~i 707 (949)
++|++|.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 6899999963 469999999999999999999999999999999999999999999999998764 244567889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEE
Q 002236 708 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 787 (949)
Q Consensus 708 G~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vl 787 (949)
+|+|| ||||||||+++|+|++.+|+++
T Consensus 76 ~~~~q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 76 GYVPQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred EEEee-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 788 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 788 lLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
+|||||+|||+.++..+++.|++.+ +++|+|++||++++++.+||++++|.+|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999864 47999999999999999999999999875
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.2e-35 Score=355.20 Aligned_cols=194 Identities=20% Similarity=0.328 Sum_probs=166.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..|+++|+++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 450 ~~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------K 514 (659)
T ss_pred CeEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------C
Confidence 36999999999963 24699999999999999999999999999999999999999999998764 4
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCccccc---------CCCCChhHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGMKRRL 774 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~-~~~~~~~v~~~L~~l~L~~~~~~~~~---------~~~LSGGqKqRL 774 (949)
+++||+||++.+++. |++||+.+.....+.. ....+++++++++.+++.+ ..+++ .++||||||||+
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH--ILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH--HHhhcCCcccccccccCCCHHHHHHH
Confidence 679999999999987 9999998754322211 1122456788999999963 44443 379999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
++||||+.+|+++||||||+|||+.+++.+.+.+++. |+|+|++||+++++ ..|||+++|+.
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999999999999998763 89999999999987 56999999963
No 349
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=325.44 Aligned_cols=225 Identities=27% Similarity=0.478 Sum_probs=186.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~ 702 (949)
...+.+++++..=++. ++++|+|+||++.+||.+||+||+|||||||.|+|.|..+|++|.|++||.|++. +.++
T Consensus 332 ~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 332 QGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH
Confidence 3468999999866542 5789999999999999999999999999999999999999999999999999975 7778
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHH-----HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALT-----QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-~~~~~~~-----~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLsl 776 (949)
.-++|||.||+-.||+. |+.||+. |+.. .+.+.+- ..+.|++-++--..+.....-...||||||||+++
T Consensus 408 lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaL 483 (580)
T COG4618 408 LGRHIGYLPQDVELFDG-TIAENIA---RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIAL 483 (580)
T ss_pred hccccCcCcccceecCC-cHHHHHH---hccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHH
Confidence 88999999999999998 9999995 4431 1111111 12344443332211122233345799999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
||||.|+|.+++||||-+.||......+.+.|.+.| +|.|+|++||...... .+|+|.+|++|++...|+.+|+.++.
T Consensus 484 ARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999975 6999999999998765 59999999999999999999998775
Q ss_pred CC
Q 002236 856 GG 857 (949)
Q Consensus 856 g~ 857 (949)
..
T Consensus 563 ~~ 564 (580)
T COG4618 563 LR 564 (580)
T ss_pred cC
Confidence 43
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=293.25 Aligned_cols=223 Identities=23% Similarity=0.375 Sum_probs=197.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCeecCc--cH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT--DM 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~ptsG~I~i~G~di~~--~~ 700 (949)
.+++++||+..-.+ ++.+|++|||+|++||+.+|+||||||||||.+.|+|.- ++|+|+|.++|+||.. ..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHh
Confidence 46899999998863 158999999999999999999999999999999999974 8899999999999975 44
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSV 776 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~---~~~~~~~v~~~L~~l~L~~~~~~~~~~~-~LSGGqKqRLsl 776 (949)
+++|..|..-+|.|.=++..|+.+.|......+.-. ..+..+++++.++.+++.+ .++++.+. .+|||+|+|..|
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHH
Confidence 678889999999999999999999998765542211 3467888999999999985 68899885 699999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhc-CEEEEEeCCEEEEEcCHHHHHHh
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC-DRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~-drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+.+++.+|++.|||||-||||..+-+.+-+.+.+++ +|++++++||+-+.++.+- |++.||.+|+|++.|.+ +|..+
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 999999999999999999999999999999999975 5999999999988887663 99999999999999999 66544
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.7e-34 Score=291.26 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=136.4
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
.+.|++|+||++++||+++|+||||||||||+|+|. +++|++.++|..-.. .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc----ccccEEEEhH-----------
Confidence 478999999999999999999999999999999985 379999998763211 1345888887
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--CcEEEEeCCCCCCCHHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVVYMDEPSTGLDPASR 801 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~--P~vllLDEPTsGLDp~sr 801 (949)
.++++.++|.. ...++++.+||||||||+++|+||+.+ |+++||||||+|||+.++
T Consensus 68 ---------------------~~~l~~~~L~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 68 ---------------------LQFLIDVGLGY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred ---------------------HHHHHHcCCCc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 24678888862 247899999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 802 NNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 802 ~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
+.+.+.|++.+ +|+|||++||++++++ .|||+++|.+|+-
T Consensus 126 ~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 126 NQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 99999999864 6999999999999985 7999999977554
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-33 Score=367.42 Aligned_cols=208 Identities=22% Similarity=0.385 Sum_probs=173.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.|+++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699 (1522)
T ss_pred cEEEEEeEEEcCCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------
Confidence 69999999999742 35699999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH--HHHHHcCCCC---CCcccccCCCCChhHHHHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--ESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~--~~L~~l~L~~---~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+||||||++.+++ .|++||+.|.... ..+..++.++ .+.+.++..+ +...+++..+||||||||++||||+
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 4999999999876 5999999985321 1122111111 1122333221 1234677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR---AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~---~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+.+|++++|||||++||+.+++.+++.+.+ ..+|+|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHhc
Confidence 999999999999999999999999999864 3568999999999999876 999999999999999999999764
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.2e-34 Score=345.58 Aligned_cols=218 Identities=20% Similarity=0.258 Sum_probs=169.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC---CCCcceEEEcCeecC---
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYVQGLDIR--- 697 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~---~ptsG~I~i~G~di~--- 697 (949)
..+|+++|++|.|++ +.+|+|+||+|.+||++||+|+||||||||+|+|+|.. .|++|+|.+.++++.
T Consensus 175 ~~~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 346999999999973 46999999999999999999999999999999999964 689999976554421
Q ss_pred --c-------cH---HHhhccEEEEcCCCCCCCC-CC---------------HHHHHH-HHhhhcCCCchhHHHHHHHHH
Q 002236 698 --T-------DM---DRIYTSMGVCPQEDLLWET-LT---------------GREHLL-FYGRLKNLKGPALTQAVEESL 748 (949)
Q Consensus 698 --~-------~~---~~~r~~iG~~pQ~~~L~~~-lT---------------v~E~L~-~~~~l~g~~~~~~~~~v~~~L 748 (949)
. .. ...++.+|+++|.+.+... .+ ..+.+. .+.++........+.++.++|
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 1 00 1123457788876432211 00 111111 111121122234567788899
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHH
Q 002236 749 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 828 (949)
Q Consensus 749 ~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae 828 (949)
+.+|+.+ ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+++.|++. +.|||++||+++++.
T Consensus 329 ~~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 329 AGLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLN 405 (718)
T ss_pred HHCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 9999953 3578899999999999999999999999999999999999999999999999876 679999999999999
Q ss_pred HhcCEEEEEeCCEEE-EEcCHHH
Q 002236 829 ALCDRLGIFVDGSLQ-CIGNPKE 850 (949)
Q Consensus 829 ~l~drI~Im~~G~l~-~~Gs~~~ 850 (949)
.+|||+++|++|++. ..|+..+
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHH
Confidence 999999999999996 5677643
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.9e-33 Score=363.98 Aligned_cols=193 Identities=21% Similarity=0.358 Sum_probs=161.8
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +||||||++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4699999999999999999999999999999999999999999999998 39999999999986 9999
Q ss_pred HHHHHhhhcCCCchhHHHH-----HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 002236 725 HLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~-----v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~ 799 (949)
|+.|.... .....++. .++.++.+...+......+..+||||||||++||||++.+|+++||||||+|||+.
T Consensus 506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99985322 11111111 12223333221112345668899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 800 SRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 800 sr~~l~~~-L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
.++.+++. +.+..+|+|+|++||++++++. ||||++|++|+++..|+++++.+.
T Consensus 583 ~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 583 TEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999985 5666679999999999999875 999999999999999999999753
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-33 Score=363.95 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=174.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.|+++|+++.|+++ .++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. .+|+
T Consensus 614 ~I~~~~vsF~y~~~---~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDSK---TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRG 679 (1495)
T ss_pred cEEEEeeEEEcCCC---CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecC
Confidence 59999999999742 135799999999999999999999999999999999999999998763 2467
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLsl 776 (949)
+|+||+|++.+++. |++|||.|+.. ..+++.+++++.++|.+ +.....+..+||||||||++|
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 89999999999986 99999998631 12345666666666532 012234455799999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~-L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|||++.+|+|+|||||||+||+...+++.+. ++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHhc
Confidence 9999999999999999999999999988765 555567899999999998865 5999999999999999999999764
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=278.12 Aligned_cols=224 Identities=26% Similarity=0.415 Sum_probs=185.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCe-----ecCcc
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL-----DIRTD 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~-----di~~~ 699 (949)
+.+.+++|+|.|++ .+..+|+||++++||+.||+|.+|||||||+++|+|-+.|++|+|.+.-. |+...
T Consensus 5 PLL~V~~lsk~Yg~------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~m 78 (258)
T COG4107 5 PLLSVSGLSKLYGP------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTM 78 (258)
T ss_pred cceeehhhhhhhCC------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhh
Confidence 46899999999985 45889999999999999999999999999999999999999999988542 22211
Q ss_pred H-----HHhhccEEEEcCCCC--CCCCCC----HHHHHH-HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 002236 700 M-----DRIYTSMGVCPQEDL--LWETLT----GREHLL-FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 767 (949)
Q Consensus 700 ~-----~~~r~~iG~~pQ~~~--L~~~lT----v~E~L~-~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LS 767 (949)
. .-.|..-|++.|++. |-...+ +-|-+. ...|-+ ..+++...++|+++++.. ...|..++++|
T Consensus 79 sEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~-~RiDD~PrtFS 153 (258)
T COG4107 79 SEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDL-DRIDDLPRTFS 153 (258)
T ss_pred chHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCc-ccccCcccccc
Confidence 1 123456799999863 332222 333332 223333 356788899999999975 57799999999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 768 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 768 GGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
|||+|||.|||-|+..|+++++||||.|||..-+.++.++++.+ .+ |-+++++|||+.-+.-++||..+|.+|++++.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 99999999999999999999999999999999999999999985 34 89999999999999999999999999999999
Q ss_pred cCHHHHHHhcCCcE
Q 002236 846 GNPKELKARYGGSY 859 (949)
Q Consensus 846 Gs~~~Lk~~~g~~y 859 (949)
|-.+.+.......|
T Consensus 234 GLTDrvLDDP~hPY 247 (258)
T COG4107 234 GLTDRVLDDPHHPY 247 (258)
T ss_pred ccccccccCCCCch
Confidence 98877766554444
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=283.13 Aligned_cols=190 Identities=29% Similarity=0.420 Sum_probs=171.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+++.+||+-.-+ +...+.++||++.+||++-|.||||||||||+|||+|+.+|++|+|+++|..+....+..++
T Consensus 2 ~L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 2 MLEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred cchhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHH
Confidence 355677776665 36799999999999999999999999999999999999999999999999999988877778
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.+-|+--.+.+=..||++|||.|+.++.+- .....+.++++.+||. ++.|.++++||-|||||+++||-.+..++
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~--g~~dlp~~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLA--GLEDLPVGQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcc--cccccchhhcchhHHHHHHHHHHHcCCCC
Confidence 888888889999999999999999998874 2245788999999997 59999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-hcCCcEEEEEcCCHHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEE 826 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~-~~~g~tIIltTH~mee 826 (949)
+.|||||+++||..++..+-.++.. ..+|-.||+|||..--
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999976 5778899999998543
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.8e-33 Score=362.96 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=174.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCeecCccHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts-G~I~i~G~di~~~~~~~r 704 (949)
.|+++|+++.|+.+ .++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++ |+|.+ +
T Consensus 614 ~I~~~nvsf~y~~~---~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~ 678 (1622)
T PLN03130 614 AISIKNGYFSWDSK---AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------R 678 (1622)
T ss_pred ceEEEeeEEEccCC---CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------c
Confidence 59999999999742 13579999999999999999999999999999999999999999 89974 4
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
++|+||+|++.+++. |++|||.|+.. ..+++.+++++.++|.+ +.....+..+||||||||++
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 579999999999986 99999998632 12456667777766642 11223455679999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~-~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||||+..+|+|+|||||||+||+...+++.+ .++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999988875 5565667999999999998765 5999999999999999999999764
No 359
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-32 Score=331.99 Aligned_cols=220 Identities=25% Similarity=0.379 Sum_probs=190.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--CCcceEEEcCeecCccHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~--ptsG~I~i~G~di~~~~~~ 702 (949)
+....+|+.+.-+.++ ..++.|+||+=-++||-.+||+|+|||||||||++|+|=.. -.+|+|+|+|++... +.
T Consensus 786 ~V~~w~dl~~~~~~qG--~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~t 861 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG--GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ET 861 (1391)
T ss_pred ceEEEEeCCccccccc--cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hh
Confidence 3455677776654332 35789999999999999999999999999999999999643 468999999998753 45
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCC----CChhHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGK----YSGGMKRRLS 775 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~----LSGGqKqRLs 775 (949)
.+|.+|||-|+|.-.+.+||||-|.|.+.+|- ++.++..+.|+++++.++|. +++|..++. ||.+||+||+
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~--~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK--EYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch--hhhhhhccCCCCCCCHHHhceee
Confidence 67889999999999999999999999998873 44555568899999999997 488888888 9999999999
Q ss_pred HHHHHcCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEEcCHHH
Q 002236 776 VAISLIGNP-KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIGNPKE 850 (949)
Q Consensus 776 lA~ALi~~P-~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~me-eae~l~drI~Im~~-G~l~~~Gs~~~ 850 (949)
||.-|+.+| .||+|||||||||..+.-.+.+.+++. +.|+||+.|-|... ++-+.-||+++|++ |+.+..|++.+
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999 999999999999999999999999995 67999999999986 55556899999986 68999998754
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=322.80 Aligned_cols=204 Identities=28% Similarity=0.377 Sum_probs=176.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|.++|+++.|++ +.+++|+||++.+|+++||+|+||||||||||+|+|.+.|++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 36899999999973 68999999999999999999999999999999999999999999987652
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhh-hc-----------------------------CCCchhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-----------------------------NLKGPALTQAVEESLKSVNLF 754 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~-----------------------------g~~~~~~~~~v~~~L~~l~L~ 754 (949)
-++||++|+..+.+..||.+.+..... +. .....+.+.+++.+|..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 259999999999999999987654221 00 011123356788899999997
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEE
Q 002236 755 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 834 (949)
Q Consensus 755 ~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI 834 (949)
+ . ++++++||||||+|++||+||+.+|++|+|||||+.||..+...+-+.|++.+ | |+|++|||-+..+..|++|
T Consensus 146 ~--~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 146 D--E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred c--c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhhe
Confidence 3 3 99999999999999999999999999999999999999999999999998654 4 9999999999999999999
Q ss_pred EEEeCCEEEEE-cCHH
Q 002236 835 GIFVDGSLQCI-GNPK 849 (949)
Q Consensus 835 ~Im~~G~l~~~-Gs~~ 849 (949)
+-++.|++... |+-.
T Consensus 221 ~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 221 LELDRGKLTPYKGNYS 236 (530)
T ss_pred EEecCCceeEecCCHH
Confidence 99999998754 4443
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=8.9e-32 Score=286.05 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=140.7
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHH-HHHhCCCCCCcceEEEc-C------ee---cC-ccHHHhh-ccEEEE
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQ-G------LD---IR-TDMDRIY-TSMGVC 710 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLl-k~L~Gl~~ptsG~I~i~-G------~d---i~-~~~~~~r-~~iG~~ 710 (949)
+..+|+++||+|++||++||+|+||||||||+ ..+.+ +|++.+. + .. +. .+..+.+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 44432 3433211 0 00 00 0111111 234455
Q ss_pred cCCCC--CCCCCCHH---HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC-
Q 002236 711 PQEDL--LWETLTGR---EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP- 784 (949)
Q Consensus 711 pQ~~~--L~~~lTv~---E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P- 784 (949)
.|++. +.+..++. |...+...+. ......++ .+.++.++|.+ ...++++.+||||||||+++|+||+.+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 55543 23444543 3333322221 12223333 57899999963 2579999999999999999999999998
Q ss_pred -cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEc
Q 002236 785 -KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIG 846 (949)
Q Consensus 785 -~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~G 846 (949)
+++||||||+|||+.+++.+.+.|+++ ++|.|||++||++++++ +|||+++| ++|++++.|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 599999999999999999999999986 46899999999999985 89999999 999999876
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.3e-32 Score=301.90 Aligned_cols=221 Identities=24% Similarity=0.448 Sum_probs=188.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..+..+++++.|.+ .+++|+++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|++. ....+
T Consensus 261 g~v~F~~V~F~y~~-----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 261 GAVAFINVSFAYDP-----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred ceEEEEEEEeeccc-----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence 45889999999975 5789999999999999999999999999999999999999999999999999976 45678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccccC----CCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQA----GKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~-----~~~~~~~~----~~LSGGqKqRL 774 (949)
|+.||++||+..||.+ |...|+.+..- ...++++...++...+.+ .+-.+..+ -.|||||||||
T Consensus 336 R~aIg~VPQDtvLFND-ti~yni~ygr~------~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 336 RRAIGIVPQDTVLFND-TIAYNIKYGRP------DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHHhCcCcccceehhh-hHHHHHhccCc------cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 9999999999999998 99999986421 112233333333333321 01223334 36999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||+++.+|+|++|||.||+||....+++...|++..+|+|-+++.|.+..+-. +|.|++|++|+|++.|+.++|..+
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999875 999999999999999999999987
Q ss_pred cCCcE
Q 002236 855 YGGSY 859 (949)
Q Consensus 855 ~g~~y 859 (949)
|+-|
T Consensus 488 -~g~y 491 (497)
T COG5265 488 -GGLY 491 (497)
T ss_pred -CChH
Confidence 4433
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.98 E-value=1.2e-31 Score=349.27 Aligned_cols=190 Identities=24% Similarity=0.405 Sum_probs=160.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++||||||++.+++ .|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHHH
Confidence 569999999999999999999999999999999999999999999863 46999999999875 59999
Q ss_pred HHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCC
Q 002236 725 HLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 797 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~-----~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLD 797 (949)
|+.++... ..+..++ .+++.++.+ |+. ...+++..+||||||||++|||||+.+|+++||||||++||
T Consensus 740 nI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 740 NILFFDEE---DAARLADAVRVSQLEADLAQLGGGLE--TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred HHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccch--HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 99985321 1111111 223344554 453 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 798 PASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 798 p~sr~~l~~~L-~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+..++.+++.+ ....+|+|+|++||+++.++ .||||++|++|++++.|+.+++.+
T Consensus 815 ~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 815 AHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 99999888754 34446899999999999986 599999999999999999999864
No 364
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.5e-32 Score=269.23 Aligned_cols=214 Identities=21% Similarity=0.310 Sum_probs=186.0
Q ss_pred CcEEEEeEEEEcCCC-CCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC-----c
Q 002236 625 HAIISDNLRKIYPGR-DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-----T 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~-~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~-----~ 698 (949)
..+.++|++|+|-=. .+...-++++|+||+|+.|||++|=||+||||||++|+|-|-+.|++|+|.+....-. .
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 368899999998321 1112467999999999999999999999999999999999999999999999654321 1
Q ss_pred c---HHHh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 699 D---MDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 ~---~~~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
. .-++ |+.|||+.|+-...|.....|-..-...-+|++.+..+.++.++|.++++.+ ...+-.+.++|||+|||+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe-rLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE-RLWSLAPATFSGGEQQRV 161 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-HHhcCCCcccCCchheeh
Confidence 1 1223 4679999999888888888888777777789999999999999999999985 577889999999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
.|||.++.|-+||+|||||+.||..+|+.+.++|.+.| +|.++|=+=||-+--++.|||+..|..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999876 699999999999999999999988754
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.7e-31 Score=334.02 Aligned_cols=222 Identities=21% Similarity=0.388 Sum_probs=194.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~ 702 (949)
...|+++|++.+|... -..+|+||||+|++||-+||+|..|||||||++.|-.+..|++|+|.|||.||.+ ....
T Consensus 1136 ~G~I~f~~~~~RYrp~----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred CCeEEEEEeEEEeCCC----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHH
Confidence 4469999999999752 3579999999999999999999999999999999999999999999999999986 7788
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCccccc----CCCCChhHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQ----AGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~-----~~~~~~~----~~~LSGGqKqR 773 (949)
+|++++++||+|.||.+ |+|.||.=+.+. .++++-++||.++|.+ ...+|.. ..++|-||||.
T Consensus 1212 LRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred HHhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 99999999999999998 999999754322 2456666777776632 0123333 35799999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+++||||+.+++||+|||+|+.+|+++-..+.+.|++.=+++|||.+-|.++.+.. ||||+||++|++++.|+|++|.+
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999999999999998889999999999999987 99999999999999999999987
Q ss_pred hcCCc
Q 002236 854 RYGGS 858 (949)
Q Consensus 854 ~~g~~ 858 (949)
+.+.-
T Consensus 1363 ~~~S~ 1367 (1381)
T KOG0054|consen 1363 DKDSL 1367 (1381)
T ss_pred CCcch
Confidence 75443
No 366
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=258.09 Aligned_cols=199 Identities=26% Similarity=0.435 Sum_probs=174.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~~~~~ 702 (949)
++.++|++.+-++ .-.|-++|++|.+|||+.|+||+|||||||+.-+.|.+.+. +|++.++++++..- ..
T Consensus 2 ~l~l~nvsl~l~g------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l-Pa 74 (213)
T COG4136 2 MLCLKNVSLRLPG------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML-PA 74 (213)
T ss_pred ceeeeeeeecCCC------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc-ch
Confidence 4678999987764 56899999999999999999999999999999999999885 89999999998753 34
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHH--hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFY--GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~--~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
.++++|+.+|++.|||.++|.+||.|. ..+|| ...++.++..|++.+|. +..++.+.+||||||-|+++-|+|
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG---~aRr~~a~aAL~~~gL~--g~f~~dP~tlSGGQrARvaL~R~L 149 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLD--GAFHQDPATLSGGQRARVALLRAL 149 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCccccc---HHHHhhHHHHHHHhccc--hhhhcChhhcCcchHHHHHHHHHH
Confidence 578999999999999999999999873 33444 45667889999999997 588999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHH-Hhc-CCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVK-RAK-QGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~-~~~-~g~tIIltTH~meeae~l~drI~Im 837 (949)
+..|+.++||||+|.||..-|.++.+.+- +.+ .|.-.|++|||.+++++ ..|++-|
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa-gsrVie~ 207 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA-GSRVIEM 207 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC-CCeeeee
Confidence 99999999999999999999999999874 454 58999999999999883 5565544
No 367
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.8e-30 Score=293.06 Aligned_cols=209 Identities=22% Similarity=0.417 Sum_probs=186.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC--ccHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~--~~~~~ 702 (949)
..++++|++.. ..++|+||++++|||+||-|-=|||+|-+++.|.|..++++|+|.++|+++. +..+.
T Consensus 262 ~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 262 PVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred cEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 35678887632 2689999999999999999999999999999999999999999999999875 34567
Q ss_pred hhccEEEEcCC---CCCCCCCCHHHHHHHHhhhcC------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQE---DLLWETLTGREHLLFYGRLKN------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~---~~L~~~lTv~E~L~~~~~l~g------~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
++..|+|||.+ ..++..++++||+.+. .++. +..+..++.++++.+.+++.. .-.+.++.+||||+|||
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~-~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehH-hhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhhh
Confidence 88999999997 5789999999999887 2322 455666778899999999964 45689999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
+.||+.|..+|+||||||||.|+|..++.+++++|+++ ++|++||++|-+|+|+..+||||+||++|+++..
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999985 6899999999999999999999999999999874
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=297.99 Aligned_cols=207 Identities=25% Similarity=0.321 Sum_probs=179.2
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
....++++|++|.|++ .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-------- 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-------- 384 (530)
T ss_pred CCeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--------
Confidence 3557899999999974 268999999999999999999999999999999999999999999986532
Q ss_pred hhccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
-++||.+|+. .+.+..|+.|++.-... ...++.+...|..+++.. +...++++.||||||.||.+|+.++
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCCh-HHHhCchhhcCHhHHHHHHHHHHhc
Confidence 3599999987 44577899999875321 112678899999999984 5679999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE-cCHHHHHHh
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNPKELKAR 854 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~-Gs~~~Lk~~ 854 (949)
.+|.+|||||||+.||..++..+-+.|.... -|||++|||-+.++++|++++++.+ ++... |..++..+.
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999999999999998765 3899999999999999999999998 66654 777665543
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=1.5e-30 Score=253.53 Aligned_cols=132 Identities=35% Similarity=0.652 Sum_probs=119.7
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. .....++.++|++|++.+++.+|++|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 689999999999999999999999999999999999999999999999987 456678899999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccC----CCCChhHHHHHHHHHHHcCCCcEEEEeCCCC
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA----GKYSGGMKRRLSVAISLIGNPKVVYMDEPST 794 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~----~~LSGGqKqRLslA~ALi~~P~vllLDEPTs 794 (949)
..+++++++++.+++.+ ..++.+ .+||||||||++||+||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------ccccccccccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33567888999998753 344444 9999999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1e-29 Score=275.22 Aligned_cols=196 Identities=20% Similarity=0.278 Sum_probs=158.5
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh--------CC--CCCCcc-----------eEEEcCeecCccH---
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI--------GI--TRTTSG-----------TAYVQGLDIRTDM--- 700 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~--------Gl--~~ptsG-----------~I~i~G~di~~~~--- 700 (949)
...|+|++++|+.|+.+++.|++|||||||++.+. +. ..|..+ -|.|+..+|....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 56899999999999999999999999999998552 11 112211 4677777764321
Q ss_pred --------HHhhc----------------cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 002236 701 --------DRIYT----------------SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 756 (949)
Q Consensus 701 --------~~~r~----------------~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~ 756 (949)
+.+|+ .++|..+....+..||+.|++.|+..+++ .+++.++|+.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~- 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGY- 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCch-
Confidence 12222 24555566666778999999999887642 245678999999962
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcC
Q 002236 757 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 832 (949)
Q Consensus 757 ~~~~~~~~~LSGGqKqRLslA~ALi~~---P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~d 832 (949)
...++++.+||||||||+++|+||+.+ |++++|||||+|||+..++.++++|+++. +|.|||++||++++++ .||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD 239 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CAD 239 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 147999999999999999999999996 79999999999999999999999999864 6899999999999986 699
Q ss_pred EEEEE------eCCEEEEEcCH
Q 002236 833 RLGIF------VDGSLQCIGNP 848 (949)
Q Consensus 833 rI~Im------~~G~l~~~Gs~ 848 (949)
+++.| ++|++++.|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999874
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=4.1e-30 Score=267.96 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=137.4
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---------ceEEEcCeecCccHHHhhccEEEEcCCCCCCCC
Q 002236 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---------GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (949)
Q Consensus 649 ~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts---------G~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~ 719 (949)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|+++... ..++++||+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCCc--
Confidence 6789999999 999999999999999999999987653 4677888776542 2357899999998766
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc----CCCcEEEEeCCCCC
Q 002236 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTG 795 (949)
Q Consensus 720 lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi----~~P~vllLDEPTsG 795 (949)
| . .. ..++++++++. . +..++.+.+||||||||+++|++++ .+|++++|||||+|
T Consensus 89 --------~-~----~~---~~~~~~~~l~~---~--~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 --------Y-S----II---SQGDVSEIIEA---P--GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred --------e-e----EE---ehhhHHHHHhC---C--CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 1 1 10 13466777776 2 3678999999999999999999987 56799999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 796 LDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 796 LDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
||+.++..+++.|++++++.|||++||++++++ .|||++.|..
T Consensus 148 LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 148 LDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred CCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999999999999999877899999999999875 7999998864
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=8.2e-30 Score=272.58 Aligned_cols=185 Identities=18% Similarity=0.234 Sum_probs=141.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh----------------CCCCCCcc--------eEEEcCeec----
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------GITRTTSG--------TAYVQGLDI---- 696 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~----------------Gl~~ptsG--------~I~i~G~di---- 696 (949)
+.++++++ |++++|+||||||||||+++|. +++.+++| ++.+++.+-
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 56888887 8999999999999999999998 55666677 666666322
Q ss_pred CccHHHhhccEEEEcCCCCCCC-CCCHHHHHHHHhhhcCCCchhHH--HHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 697 RTDMDRIYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALT--QAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 697 ~~~~~~~r~~iG~~pQ~~~L~~-~lTv~E~L~~~~~l~g~~~~~~~--~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
..+...+++.+|++||+..+++ .+|..|...+...+ ++...... ....++.+.+++. +..++++.+||||||||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~--~~~~~~~~~lS~G~~~r 166 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMK--QDEQQEMQQLSGGQKSL 166 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcc--ccccccccccCHHHHHH
Confidence 2223346778999999988887 46777766665543 54432110 0011233334453 35788999999999999
Q ss_pred HHHHHHHc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 774 LSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 774 LslA~ALi----~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
+++|+||+ .+|++++|||||+||||.+++.+++.|++.+++++||++||+. ++..+|||+++|.
T Consensus 167 ~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 167 VALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHhhCCEEEEEE
Confidence 99999996 3689999999999999999999999999876688888888885 5778999999986
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=6.6e-31 Score=276.95 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=150.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh-
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r- 704 (949)
.|+++|.. .|++ +.+++++++ +++||+|||||||||++++|. ++.|.+.. ..+
T Consensus 5 ~l~l~nfk-~~~~------~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG------EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQ 58 (212)
T ss_pred EEEEECcc-cCCC------CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----Hhhh
Confidence 36777776 7763 579999988 899999999999999999997 44565432 223
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHH--HHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l--------~g~~~~~~~~--~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
+++|+++|+..+++.+|++|++.+++++ +|+..++... ..+++++.++|. +..++++..||+|||||+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~--~~~~~~~~~lS~G~~~r~ 136 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP--KKSWKNISNLSGGEKTLS 136 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc--cccccchhhcCHHHHHHH
Confidence 5799999999999999999998887754 3333221111 125666778886 467889999999999999
Q ss_pred HHHHHHcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 775 SVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 775 slA~ALi~----~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
++|+|++. +|++++|||||+||||.+++.+++.+++.+++.++|++||+ +++..+|||+++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR-NNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc-HHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998778899999999 567789999999974
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=9.7e-29 Score=309.51 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=179.9
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
.+..++++|.++...+. .....|+||||+|++|+.+|++|+-|||||+|+..|.|.++..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~---~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE---SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC---CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 34579999999998752 1345999999999999999999999999999999999999999999999984
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqR 773 (949)
++||||.+-+++. |+|||+.|...+ .+++-++.++.+.|.+ ......+.-+||||||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 8999999999987 999999996432 3566677777777653 122345666899999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~-L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+++|||+..|++|++||.|.|++|...-+++.+- |+..-++||+|++||.++.... ||.|++|++|++...|+.+||.
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHH
Confidence 9999999999999999999999999999998886 4446789999999999888775 9999999999999999999998
Q ss_pred Hh
Q 002236 853 AR 854 (949)
Q Consensus 853 ~~ 854 (949)
+.
T Consensus 731 ~~ 732 (1381)
T KOG0054|consen 731 KS 732 (1381)
T ss_pred hc
Confidence 54
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=3.3e-28 Score=256.22 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=141.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEe-CCcEEEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcC-eecCccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQG-LDIRTDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~-~Gei~gLLG~NGAGKTTLlk~L~G-l~~ptsG~I~i~G-~di~~~~~~ 702 (949)
.|+++|.. .|.+ . .+++|+.. +|++++|+|||||||||++++|++ ++.+..+....+. .+.. ....
T Consensus 5 ~i~l~nf~-~y~~------~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE------E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGE 73 (213)
T ss_pred EEEEECCc-CcCC------c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCC
Confidence 47888888 6642 1 56677654 599999999999999999999996 4445555554431 0110 1123
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.+..|++.+|++... .++..+ .+++..+..+.+ .++..++. ++.++++.+||||||||+++|+||+.
T Consensus 74 ~~~~v~~~f~~~~~~--~~~~r~-------~gl~~~~~~~~~--~l~~g~l~--~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 74 DTAEVSFTFQLGGKK--YRVERS-------RGLDYDQFTRIV--LLPQGEFD--RFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred ccEEEEEEEEECCeE--EEEEEe-------cCCCHHHHHHhh--hhhhcchH--HHhcCCccccCHHHHHHHHHHHHHHh
Confidence 456799999986321 111111 144433322222 24444454 47789999999999999999999984
Q ss_pred ----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 783 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 783 ----------~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
+|++++|||||+|||+.+++.+.+.|++++ +|+|||++||++++++.+||++.+|++|.
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 679999999999999999999999998875 48999999999999999999999999985
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3.5e-28 Score=262.11 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=143.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCe-ecCcc--H-HHhhccEEEEcCCC---------CCCCCCCHH
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGL-DIRTD--M-DRIYTSMGVCPQED---------LLWETLTGR 723 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-sG~I~i~G~-di~~~--~-~~~r~~iG~~pQ~~---------~L~~~lTv~ 723 (949)
..+++|+|||||||||++++|.|++.++ .|+++..|. ++-.. . ...+.++++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999987 468888876 43211 1 12235899999984 356678999
Q ss_pred HHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC------------------CcccccCCCCChhHHHHHHHHHHHc--
Q 002236 724 EHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG------------------GVADKQAGKYSGGMKRRLSVAISLI-- 781 (949)
Q Consensus 724 E~L~~~~~l~g-~-~~~~~~~~v~~~L~~l~L~~~------------------~~~~~~~~~LSGGqKqRLslA~ALi-- 781 (949)
+++......+. + ..+...+++.++|+.+++..+ +..++++.+||||||||+++|+||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88865432221 1 123345789999999999521 2456889999999999999999998
Q ss_pred --CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 782 --GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 782 --~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
.+|++++|||||+|||+..++.+++.|++..+|.+||++||+ .++.+.|||++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 588999999999999999999999999998779999999999 55566799997654
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=261.80 Aligned_cols=221 Identities=22% Similarity=0.374 Sum_probs=193.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec-C--ccH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-R--TDM 700 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di-~--~~~ 700 (949)
...+++++|+..=.. ...+|++|||+|+.|||+||.|..|-|.+.|+..|+|+.+|.+|+|.++|+++ . +..
T Consensus 255 ~~vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 457899999976532 25799999999999999999999999999999999999999999999999997 2 233
Q ss_pred HHhhccEEEEcCCC---CCCCCCCHHHHHHHHhhhc------C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 701 DRIYTSMGVCPQED---LLWETLTGREHLLFYGRLK------N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~---~L~~~lTv~E~L~~~~~l~------g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
...+..+||+|++. .+-.++|+.||+.+...-+ + +...++++...++++++++.. .-.+.+++.||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 44557899999975 6888999999998854321 2 456788889999999999963 35677899999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
+||+-+||-|..+|++|+..+||-|||..+.+.+.+.|.+. ++|++|+++|-++||+..+||||++|.+|+++...+++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 99999999999999999999999999999999999999886 56999999999999999999999999999999877765
Q ss_pred H
Q 002236 850 E 850 (949)
Q Consensus 850 ~ 850 (949)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 4
No 378
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=1.1e-25 Score=278.40 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=113.1
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---cEEEEeCCCCCC
Q 002236 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGL 796 (949)
Q Consensus 720 lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P---~vllLDEPTsGL 796 (949)
||+.|++.|+..++++ .+..+.|+.+||.+ ...++++.+||||||||+.||++|+.+| +++||||||+||
T Consensus 792 ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~-l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 792 MTVEEALEFFEAIPKI------ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred CcHHHHHHHHHhchhh------hHHHHHHHHCCCCc-ccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 7999999998776532 23467899999962 2468999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHHh
Q 002236 797 DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 854 (949)
Q Consensus 797 Dp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~~ 854 (949)
|+..++.++++|+++ ++|+|||++||++++++ .||+|++| .+|++++.|+++++.+.
T Consensus 865 D~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 999999999999986 46999999999999986 69999999 79999999999999764
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=1.6e-26 Score=242.21 Aligned_cols=164 Identities=24% Similarity=0.280 Sum_probs=129.7
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHH----hCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCC-----CCCCCCCH
Q 002236 652 SLALPSGECFGMLGPNGAGKTTFISMM----IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTG 722 (949)
Q Consensus 652 Sl~v~~Gei~gLLG~NGAGKTTLlk~L----~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~-----~L~~~lTv 722 (949)
++++.+| +++|+||||||||||+++| .|...|++|.+..+...+.. ...+..+++++|++ .+...+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 4566677 9999999999999999999 49999999887622222222 23456899999987 44455677
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH------HHHHHHHcCCCcEEEEeCCCCCC
Q 002236 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR------LSVAISLIGNPKVVYMDEPSTGL 796 (949)
Q Consensus 723 ~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR------LslA~ALi~~P~vllLDEPTsGL 796 (949)
.|++.+. + +.++++. .++.+++||+||||| +++|+|++.+|++++|||||+||
T Consensus 94 ~~~~~~~------~----~~~~~~~-----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 94 LENVIFC------H----QGESNWP-----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred hhceeee------c----hHHHHHH-----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 7777542 1 1222222 367789999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 797 DPASRN-NLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 797 Dp~sr~-~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
|+..++ .++++|++.+ + |++||++||+++.++ .||+++.|.+.
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 999999 9999998865 3 899999999999875 69999988653
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=2.3e-25 Score=285.82 Aligned_cols=213 Identities=21% Similarity=0.301 Sum_probs=162.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHH---------HHhCCCCCCcc----e----
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSG----T---- 688 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk---------~L~Gl~~ptsG----~---- 688 (949)
.+++++++ ...|+++||+|++||++||.|+||||||||++ .|.|...+-.+ .
T Consensus 600 ~L~l~~~~-----------~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKAT-----------KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEeccc-----------cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 46777764 13799999999999999999999999999999 67776433111 1
Q ss_pred EEEcCeecCcc-----------HHHhh---------ccEE-----EEcCC------------------------------
Q 002236 689 AYVQGLDIRTD-----------MDRIY---------TSMG-----VCPQE------------------------------ 713 (949)
Q Consensus 689 I~i~G~di~~~-----------~~~~r---------~~iG-----~~pQ~------------------------------ 713 (949)
|.|+-..+... .+.+| +..| +.++.
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 23333322110 01222 1111 11221
Q ss_pred --------CCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHc
Q 002236 714 --------DLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 714 --------~~L~~~lTv~E~L~~~~~l~---g~~~~~~~~~v~~~L~~l~L~~~~~-~~~~~~~LSGGqKqRLslA~ALi 781 (949)
...|..+||.|+|.+...-. ....++..+++ ++|+.+||. .. .++++.+||||||||++||+||+
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~--~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD--YLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc--chhhcCccccCCHHHHHHHHHHHHHh
Confidence 13677889999998865421 22344566666 588999996 34 69999999999999999999997
Q ss_pred ---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEe------CCEEEEEcCHHHH
Q 002236 782 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNPKEL 851 (949)
Q Consensus 782 ---~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~------~G~l~~~Gs~~~L 851 (949)
.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++ ..|||+++|. +|++++.|+++++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 699999999999999999999999999986 4699999999999999 7899999996 7999999999998
Q ss_pred HH
Q 002236 852 KA 853 (949)
Q Consensus 852 k~ 853 (949)
..
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 65
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.4e-26 Score=230.42 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=170.9
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 725 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~ 725 (949)
-|-.+|.++..||+.-++||||||||||+--|+|++ |-+|+|.++|.++.. ...++.++=.|..|...-...|.|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 366789999999999999999999999999999998 569999999999864 334455566788887665556788888
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC-------CCcEEEEeCCCCCCCH
Q 002236 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-------NPKVVYMDEPSTGLDP 798 (949)
Q Consensus 726 L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~-------~P~vllLDEPTsGLDp 798 (949)
|.++. +.++....++++...++|. ++..+.+.+|||||-|||-+|...+. ..+++++|||.++||.
T Consensus 93 L~L~q-----P~~~~a~~i~~i~~~L~l~--DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDv 165 (248)
T COG4138 93 LTLHQ-----PDKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV 165 (248)
T ss_pred hhhcC-----chHHHHHHHHHHHhhhccc--chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhH
Confidence 87652 4566677888999999997 47899999999999999999988764 3479999999999999
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 799 ASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 799 ~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
..+..+-.+|.+. .+|.+|||++||+.-..+-+|+++.++.|++...|+.+|+.
T Consensus 166 AQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 166 AQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 9999999999885 67999999999999999999999999999999999988753
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.5e-26 Score=249.68 Aligned_cols=203 Identities=25% Similarity=0.403 Sum_probs=170.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|.. ...-|..||++|++||++-|+|.|||||||+++.|+|+++|++|+|++||+++.. +.++.
T Consensus 321 ~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 321 KTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred cceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHH
Confidence 46999999999974 2257899999999999999999999999999999999999999999999999975 67788
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-Cccccc--CCCCChhHHHHHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQ--AGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~-~~~~~~--~~~LSGGqKqRLslA~AL 780 (949)
|+-++-++-+..||+.+- |...+...+.++..|+++.+.+. ...|.. .-+||.|||+||++-.|+
T Consensus 396 R~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred HHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 888888888877777532 22233456778888888887542 122332 357999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~-~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
+-+-+|+++||=-+.-||.-||.+++.+.- +| +||||+.+|||-.-- ..+||+.-|++|++++.
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSEL 529 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeec
Confidence 999999999999999999999999998764 54 699999999996554 46899999999999764
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=2e-25 Score=253.21 Aligned_cols=208 Identities=18% Similarity=0.296 Sum_probs=170.4
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
.+.|.++|+++.|.+ +..+.++++|.|..++.++++||||||||||+|+++|.+.|+.|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--------- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--------- 452 (614)
T ss_pred CCeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc---------
Confidence 357899999999974 237999999999999999999999999999999999999999999864433
Q ss_pred hccEEEEcCC--CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 704 YTSMGVCPQE--DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 704 r~~iG~~pQ~--~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
..+++--|| ..+--+.++-|++. .. .++....+.+..+|.++||. ++..+.+.++||+|||+||.+|++++
T Consensus 453 -~~~~~y~Qh~~e~ldl~~s~le~~~---~~--~~~~~~~e~~r~ilgrfgLt-gd~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 453 -NKLPRYNQHLAEQLDLDKSSLEFMM---PK--FPDEKELEEMRSILGRFGLT-GDAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred -ccchhhhhhhHhhcCcchhHHHHHH---Hh--ccccchHHHHHHHHHHhCCC-ccccccchhhcccccchhHHHHHHHh
Confidence 234555555 23434456666543 11 12233457788999999997 35788999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCHHHHHHh
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKAR 854 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~~~Lk~~ 854 (949)
..|.+|+|||||+|||..+...+-+.|.+... ++|++|||+..+..++++|.+..||.+. ..|+...-+.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~G--gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~ 597 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFPG--GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEH 597 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccCC--ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHH
Confidence 99999999999999999999999998877654 6999999999999999999999998765 67777665543
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=8.1e-25 Score=248.26 Aligned_cols=220 Identities=20% Similarity=0.336 Sum_probs=167.2
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc--CeecCccH
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GLDIRTDM 700 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~--G~di~~~~ 700 (949)
....+.+.|+++.|.+ +..++|++|++.+|+-+||+|+|||||||+|++|+|-..|..-++.+. ...+....
T Consensus 72 ~s~dvk~~sls~s~~g------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccccceeeeeeeccCC------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 3456899999999974 689999999999999999999999999999999999998876655443 22222111
Q ss_pred -HHh----------hccEEEEcCCCCCC-CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 002236 701 -DRI----------YTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 768 (949)
Q Consensus 701 -~~~----------r~~iG~~pQ~~~L~-~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSG 768 (949)
..+ ++++-|.-.+-... ++---.+-...|.++-....+..+.++.++|..+|... +..++.+.+|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~-~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS-EMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH-hHHHHHhhccCc
Confidence 111 11111111100000 11111222233445545556667778888888888864 678999999999
Q ss_pred hHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcC
Q 002236 769 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGN 847 (949)
Q Consensus 769 GqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs 847 (949)
|+|+|+++||||..+|++|+|||||+|||+.+...+-+.|.+..++ ++++++|+-+.+..+|+.|+-|.+++++ ..|+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCC
Confidence 9999999999999999999999999999999999999999887655 9999999999999999999999999965 5666
Q ss_pred HHH
Q 002236 848 PKE 850 (949)
Q Consensus 848 ~~~ 850 (949)
.+.
T Consensus 304 ydq 306 (614)
T KOG0927|consen 304 YDQ 306 (614)
T ss_pred HHH
Confidence 554
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=9.9e-25 Score=227.73 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=129.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec---CccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di---~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
.++++++++.+| +.+|+|||||||||++..|......+.+ ....|..+ ... ......|++.+|+..+++.
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~-~~~~~~i~~~~~~~~~~~~---- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD-GESSAKITVTLKNQGLDAN---- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC-CCCeEEEEEEEEcCCccCC----
Confidence 557888998887 8899999999999999998754332221 11112211 111 1123568899998776651
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----cCCCcEEEEeCCCCCCCHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL----i~~P~vllLDEPTsGLDp~ 799 (949)
. .....++.++++++. . +..++++++||+|||||+++|+|+ +.+|++++|||||+|||+.
T Consensus 84 -------~----~~~~~~~~~~~~l~~---~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 -------P----LCVLSQDMARSFLTS---N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred -------c----CCHHHHHHHHHHhcc---c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 0 111124567777776 3 467899999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHh-cC---CcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 800 SRNNLWNVVKRA-KQ---GRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 800 sr~~l~~~L~~~-~~---g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
.++.+++.|++. ++ +.+||++||+++++..+ |||.||..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 999999999885 32 36999999999999986 9999998764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=8.3e-24 Score=261.51 Aligned_cols=125 Identities=24% Similarity=0.365 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC---CCcEEEEeCCCCC
Q 002236 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---NPKVVYMDEPSTG 795 (949)
Q Consensus 719 ~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~---~P~vllLDEPTsG 795 (949)
+||+.|.+.|+..++++ .+..++|+.+||.. ...++++.+||||||||+.||++|+. +|++++|||||+|
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~-l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCc-hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 47899999998776532 23467899999962 24689999999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHH
Q 002236 796 LDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKEL 851 (949)
Q Consensus 796 LDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~L 851 (949)
||+..++.+++.|+++ ++|+|||++||++++++ .||++++| .+|+++..|+++++
T Consensus 862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999986 46999999999999986 69999999 79999999999875
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=7.8e-24 Score=215.86 Aligned_cols=233 Identities=18% Similarity=0.281 Sum_probs=183.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCeecCc-cH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRT-DM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p----tsG~I~i~G~di~~-~~ 700 (949)
.+.++||+..+....| ..+||+++|+++.+||+-||+|.+|||||-..|.|+|..+- |.-...+++.|+-. ..
T Consensus 3 LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 4668889888875543 57899999999999999999999999999999999998763 55566677777643 22
Q ss_pred HH----hhccEEEEcCCCC--CCCCCCHHHHHHHH---hhhcCCCch---hHHHHHHHHHHHcCCCC-CCcccccCCCCC
Q 002236 701 DR----IYTSMGVCPQEDL--LWETLTGREHLLFY---GRLKNLKGP---ALTQAVEESLKSVNLFH-GGVADKQAGKYS 767 (949)
Q Consensus 701 ~~----~r~~iG~~pQ~~~--L~~~lTv~E~L~~~---~~l~g~~~~---~~~~~v~~~L~~l~L~~-~~~~~~~~~~LS 767 (949)
++ +-+.|++++|++. |-|.-++...|.-. -.++|...+ -.++++-++|.++|+.+ ++....++.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22 2356889999974 44433333222110 012222111 12457788999999964 123457899999
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 768 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 768 GGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
-|+-|||.||+|++.+|++||.||||+.|||..+.+++.+|.++. +|.||++++||+..+.+.||||-||.-|+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999875 489999999999999999999999999999999
Q ss_pred cCHHHHHHhcCCcEE
Q 002236 846 GNPKELKARYGGSYV 860 (949)
Q Consensus 846 Gs~~~Lk~~~g~~y~ 860 (949)
+..+++.+.....|+
T Consensus 241 a~~e~l~~~PhHPYT 255 (330)
T COG4170 241 APSEELVTMPHHPYT 255 (330)
T ss_pred cchhHHhcCCCCchH
Confidence 999999887666664
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=9.4e-24 Score=227.40 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=133.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee--cCccH----
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD--IRTDM---- 700 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d--i~~~~---- 700 (949)
|+++|. |.|.+ .. ++...++ +.+|+|||||||||++.+|.+++.++.|++...+.+ +....
T Consensus 4 i~l~nf-~~~~~------~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~ 70 (247)
T cd03275 4 LELENF-KSYKG------RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKP 70 (247)
T ss_pred EEEECc-cccCC------Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccC
Confidence 677776 66742 11 2333344 999999999999999999999998888887665422 11111
Q ss_pred --HHhhccEEEEcCCCCC--CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------------------
Q 002236 701 --DRIYTSMGVCPQEDLL--WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-------------------- 756 (949)
Q Consensus 701 --~~~r~~iG~~pQ~~~L--~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~-------------------- 756 (949)
....-.+.|..|++.. +.. ++++....| .+.+ ....++.++++++.+|+...
T Consensus 71 ~~~~~~v~~~f~~~~~~~~~~~~-~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 71 DSNSAYVTAVYEDDDGEEKTFRR-IITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCceEEEEEEEEcCCCcEEEEEE-EEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 1222345555554321 111 111111000 1112 12234566788888888421
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhc
Q 002236 757 GVADKQAGKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC 831 (949)
Q Consensus 757 ~~~~~~~~~LSGGqKqRLslA~ALi~~----P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~ 831 (949)
...++++.+||||||||+++|+|++.+ |+++||||||+|||+..+..+.+.|++.+ +|.+||++||+++.. ..|
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~ 225 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKA 225 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhC
Confidence 122445689999999999999999864 99999999999999999999999999875 489999999997765 579
Q ss_pred CEEEEEeC
Q 002236 832 DRLGIFVD 839 (949)
Q Consensus 832 drI~Im~~ 839 (949)
||+++|..
T Consensus 226 d~i~~~~~ 233 (247)
T cd03275 226 DALVGVYR 233 (247)
T ss_pred CeEEEEEe
Confidence 99988864
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.90 E-value=3.8e-23 Score=230.36 Aligned_cols=187 Identities=26% Similarity=0.352 Sum_probs=151.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.+.-.+++|.|++ ..|+-=.=+++.||++|++||||-||||+.++|+|.++|++|. ..+ -
T Consensus 342 lv~y~~~~k~~g~-------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~---------~ 401 (591)
T COG1245 342 LVEYPDLKKTYGD-------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED---------L 401 (591)
T ss_pred eeecchheeecCc-------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------c
Confidence 4566788888873 2333334456788999999999999999999999999999998 222 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+++|=||.-.--.+.||++-|.-..+-. ... ..-..++++-++|+ ...++++.+||||+.|||+||.||..+++
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLE--DLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchH--HHHhcccccCCchhHHHHHHHHHhccccC
Confidence 4889999754445679999876433221 111 12335677888886 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
+++||||++-||.+.|-.+-+.|++. ..++|.+++-||+-.++-++||+++..
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999999999999999984 458999999999999999999998875
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=235.38 Aligned_cols=191 Identities=25% Similarity=0.336 Sum_probs=159.3
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
+..|.++||+..-+. .+..|++++|+|++||-+-|.|+||||||||+|.|+|+-+--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 468999999999875 35899999999999999999999999999999999999999999986541
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc------cCCCCChhHHHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 777 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~------~~~~LSGGqKqRLslA 777 (949)
-..+-|+||.+.+... |.||-+.+...... -.++++.++|.++||.+ +.++ =-..||+||||||++|
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~----~~d~~l~~vL~~vgL~~--L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPD----FSDAELVAVLHKVGLGD--LAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCC----CChHHHHHHHHHcCcHH--HHHHHhccCcHhhhcChhHHHHHHHH
Confidence 1347899999998877 99999987543322 23567788999999963 3222 2347999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im 837 (949)
|.|+++|++++|||.|++||+.+...+.+++++.-.+.|||-++|.-. ...+.++.+-+
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t-l~~~h~~~l~l 586 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT-LWNFHSRQLEL 586 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchh-hHHHHhhheee
Confidence 999999999999999999999999999999998878999999999854 44555554433
No 391
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=2.8e-22 Score=204.30 Aligned_cols=212 Identities=24% Similarity=0.345 Sum_probs=168.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH---
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--- 700 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~--- 700 (949)
+.+|++.++.++|+.. -+++-|+|++++.|...-|+|.||||||||+|+|+|-.-.-.|.|.+.|.+.-.+.
T Consensus 11 ~~aievsgl~f~y~~~-----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEecccC-----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 4589999999999863 47999999999999999999999999999999999977777799999998864311
Q ss_pred ---------HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 701 ---------DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 701 ---------~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
.++.+..|+-- +-.+-.++++.+ +.| |+...+. ++-+++++.+++. ..-+...+|-|||
T Consensus 86 ~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mif-----gV~g~dp-~Rre~LI~iLDId----l~WRmHkvSDGqr 153 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIF-----GVGGDDP-ERREKLIDILDID----LRWRMHKVSDGQR 153 (291)
T ss_pred ccCceeEecccccccccccc-cccccccccHHH-HHh-----hccCCCh-hHhhhhhhheecc----ceEEEeeccccch
Confidence 11222222222 222333455544 333 2222222 5667888888884 4567788999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~ 849 (949)
||+.|++.|++.=+||+|||-|-.||..+|..+.+.+++. .+|.||+..||..+-.+...++++.|.+|+++..-..+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999999874 46999999999999999999999999999999855555
Q ss_pred HHH
Q 002236 850 ELK 852 (949)
Q Consensus 850 ~Lk 852 (949)
.++
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 554
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3e-22 Score=226.46 Aligned_cols=203 Identities=22% Similarity=0.269 Sum_probs=173.6
Q ss_pred CCcEEEEeEEEEcCCCCCCCcc-ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 624 SHAIISDNLRKIYPGRDGNPEK-VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~-~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
.+.+++.++++.|.. +. ....+++++++--+-.+++|+||+||||++|++.|...|++|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--------- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--------- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------
Confidence 356899999999974 23 799999999999999999999999999999999999999999987765
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
|.+|+|-.|+..=|-++.+-+--.+-+...|. .++++.+.+..+||. ++.+.+.+..||||||-||++|.....
T Consensus 426 -r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~-g~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 426 -RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLS-GELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred -cceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCC-chhhhccccccCCcchhHHHHHHHhcC
Confidence 57899999997766556665544443444454 456788899999998 468888899999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-EcCH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC-IGNP 848 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~-~Gs~ 848 (949)
+|.+|+|||||+-||..+-..+-+.|+.... .||++|||.+.++.+|+.+++.++|++.- .|..
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999998888888876654 59999999999999999999999999975 3444
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=2.7e-22 Score=246.80 Aligned_cols=211 Identities=24% Similarity=0.347 Sum_probs=180.3
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCC
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 720 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p---tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~l 720 (949)
...+++|+|.-+++||.+-++||-|||||||++.|+|-+.- ..|+|..+|++...... ++.++|++|+|..++.|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 36799999999999999999999999999999999997543 35699999999876544 78899999999999999
Q ss_pred CHHHHHHHHhhhcCCC-------chh-HHHHHHHHHHHcCCCCC---CcccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 002236 721 TGREHLLFYGRLKNLK-------GPA-LTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 789 (949)
Q Consensus 721 Tv~E~L~~~~~l~g~~-------~~~-~~~~v~~~L~~l~L~~~---~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllL 789 (949)
||+|.|.|.++.++.. +.+ .....+.+++.+||.+. ..-|.-.+..|||||+||++|-+++++++++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999999999988751 111 11246789999999751 123455667999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 790 DEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 790 DEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~m-eeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
||+|+|||..+.-++.+.|++.. -+.|.+++-|.. +|+-.+-|.|.+|.+|+++..|+.++.+.-|.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHH
Confidence 99999999999999999999853 377877777665 58888999999999999999999999987654
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-22 Score=227.96 Aligned_cols=202 Identities=22% Similarity=0.346 Sum_probs=152.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.-|.+++.+..||+ +..|++-++++..|.-+||+|+||+|||||||+|+. |+|.+.. +.. +++
T Consensus 79 ~Di~~~~fdLa~G~------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~--veq---E~~ 141 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH--VEQ---EVR 141 (582)
T ss_pred cceeeeeeeeeecc------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC--chh---hee
Confidence 35888999999984 689999999999999999999999999999999987 4443322 211 010
Q ss_pred ccEEEEcC-CCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 705 TSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ-~~~L~~~lTv~E~L~~~~~l~g~~~~-~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
. -+++- ...+-.++++.+-+ .+-+.+... ..++...++|..+|..+ +...+++++||||.|.||++||||..
T Consensus 142 g--~~t~~~~~~l~~D~~~~dfl---~~e~~l~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 142 G--DDTEALQSVLESDTERLDFL---AEEKELLAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred c--cchHHHhhhhhccHHHHHHH---HhhhhhhccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHhc
Confidence 0 01111 11222333333222 222222222 23334445899999985 67889999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKEL 851 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~~~L 851 (949)
+||+|+|||||+-||..+...+-+.|+..+ .|+|++|||-......|+.|+-.++-|+. ..|+.++.
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999988766 79999999999999999999999887775 45666554
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.1e-21 Score=204.88 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=113.4
Q ss_pred eeeeeEEEEeCCc-EEEEECCCCCcHHHHHHHHh--------CCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCC
Q 002236 647 AVNGLSLALPSGE-CFGMLGPNGAGKTTFISMMI--------GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 717 (949)
Q Consensus 647 al~~lSl~v~~Ge-i~gLLG~NGAGKTTLlk~L~--------Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~ 717 (949)
.+-++||++.+|+ +++|.||||+|||||+|+|. |...|....+ .++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------SLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------cCcCccEEEE--
Confidence 4567999999995 89999999999999999998 5554432111 1333333211
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCC
Q 002236 718 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 797 (949)
Q Consensus 718 ~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLD 797 (949)
.++.. +..+...+++|+||||++.+++++ .+|+++++|||++|+|
T Consensus 78 --------------------------------~lg~~--~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 78 --------------------------------DIGDE--QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred --------------------------------ecCch--hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 11221 234566789999999999999884 8999999999999999
Q ss_pred HHHHHHHHH-HHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 798 PASRNNLWN-VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 798 p~sr~~l~~-~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
+..++.++. ++++.+ +|.++|++||+ .+...+|||+..|.+|++..++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEEEec
Confidence 999999975 566654 58999999998 5677899999999999998763
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.6e-21 Score=210.37 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=155.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
.+.+-+.++++.|++ .++..++++|.|.-...++|+||||.|||||+++|+|-+.|+.|+.+-+ -
T Consensus 584 PPvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------h 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------H 648 (807)
T ss_pred CCeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------c
Confidence 345779999999975 4789999999999999999999999999999999999999999986533 2
Q ss_pred hccEEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc-ccCCCCChhHHHHHHHHHHH
Q 002236 704 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 704 r~~iG~~pQ~~--~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~-~~~~~LSGGqKqRLslA~AL 780 (949)
|-+||+.-|+. .|-..-|..|.| .+..+++. +.+.+.|-.+||. .+++ -++..||||||-||++|-.-
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyL---qr~FNlpy----q~ARK~LG~fGL~--sHAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYL---QRKFNLPY----QEARKQLGTFGLA--SHAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHH---HHhcCCCh----HHHHHHhhhhhhh--hccceEeeeecCCcchHHHHHHHHh
Confidence 45799998875 344444555554 45555654 4456778889996 3554 46889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
++.|+||||||||+.||..+...+-+.|.+++. .||++|||-..+.+-.-.++|+.+-.|
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999999999988765 599999997665554445666665443
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=9.7e-21 Score=199.99 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=73.1
Q ss_pred cccccCCCCChhHHHHHHHHHH----HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-C-cEEEEEcCCHHHHHHh
Q 002236 758 VADKQAGKYSGGMKRRLSVAIS----LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-G-RAIILTTHSMEEAEAL 830 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~A----Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g-~tIIltTH~meeae~l 830 (949)
+.+..+.+||||||||+.+|.+ ++.+|+++++||||+|||+..++.+++.|.+. ++ | .++|++||++++....
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 4577889999999999887754 46899999999999999999999999999885 44 5 5899999999888888
Q ss_pred cC--EEEEEeCCE
Q 002236 831 CD--RLGIFVDGS 841 (949)
Q Consensus 831 ~d--rI~Im~~G~ 841 (949)
|| ++++|.+|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 87 788888886
No 398
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=4.8e-20 Score=195.88 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=120.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEE-EEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG-~~pQ~~~L~~~lTv~ 723 (949)
+.+.+|++++.++|++++|.||||+||||++++++= ..+..++| |+|.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe-----
Confidence 468999999999999999999999999999999981 12344566 6666543222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--cCCCcEEEEeCC---CCCCCH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 798 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL--i~~P~vllLDEP---TsGLDp 798 (949)
.++++++.+++. +...+.+|.||++++.+++++ +.+|+++||||| |+++|+
T Consensus 72 -------------------~~~~il~~~~l~-----d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~ 127 (222)
T cd03285 72 -------------------IVDCILARVGAS-----DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDG 127 (222)
T ss_pred -------------------ccceeEeeeccc-----cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHH
Confidence 123455666664 234688999999999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 799 ASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 799 ~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
.++. |.+++.+ +.|.++|++||+ .++.++||++..+.+|++...++
T Consensus 128 ~~~~--~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 128 FGLA--WAIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHH--HHHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9885 4444443 247899999995 88889999999999999987765
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=4.9e-20 Score=205.79 Aligned_cols=173 Identities=25% Similarity=0.399 Sum_probs=131.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE-----------cCeecCccHHHhh---ccEEEEcCC----CCC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-----------QGLDIRTDMDRIY---TSMGVCPQE----DLL 716 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i-----------~G~di~~~~~~~r---~~iG~~pQ~----~~L 716 (949)
.++|+++||+|+||-||||.+|+|+|.++|.=|+-.= .|..+..-..++. -++..=||. +..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4689999999999999999999999999998876420 1111110001111 012222332 111
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCC
Q 002236 717 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 796 (949)
Q Consensus 717 ~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGL 796 (949)
+.. ||.|-|.- .+.+-..+++.++++|. ...|+.+++||||+.||++||.|+..+++++++|||||-|
T Consensus 177 ~KG-~v~elLk~---------~de~g~~devve~l~L~--nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyL 244 (591)
T COG1245 177 VKG-KVGELLKK---------VDERGKFDEVVERLGLE--NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL 244 (591)
T ss_pred hcc-hHHHHHHh---------hhhcCcHHHHHHHhcch--hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccc
Confidence 222 44444321 11123578899999997 5899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 797 DPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 797 Dp~sr~~l~~~L~~~~~-g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
|...|-..-++|+++.+ +++||++.||+.-.+-++|-|.|+..
T Consensus 245 Di~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 245 DIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999754 89999999999999999999999863
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.3e-19 Score=198.37 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=71.2
Q ss_pred ccCCCCChhHHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEE
Q 002236 761 KQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 836 (949)
Q Consensus 761 ~~~~~LSGGqKqRLslA~ALi~----~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~I 836 (949)
+....||||||||+++|++++. +|++++|||||+|||+..++.+++.|++..+++++|++||+++.+ .+||++++
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~ 244 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFL 244 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEE
Confidence 3445599999999999987654 999999999999999999999999999887789999999999865 68999999
Q ss_pred EeCCE
Q 002236 837 FVDGS 841 (949)
Q Consensus 837 m~~G~ 841 (949)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98874
No 401
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.80 E-value=7.3e-19 Score=201.44 Aligned_cols=201 Identities=22% Similarity=0.265 Sum_probs=158.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
+.+|++++++..=+.. +..+++|+||+|++|+-+-|.||||+|||+|+|+|.|+-+-++|++.--...-.
T Consensus 431 Dn~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------ 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------ 500 (659)
T ss_pred cceEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC------
Confidence 4689999999998753 357899999999999999999999999999999999999999999975443211
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCC----CCccccc-----CCCCChhHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFH----GGVADKQ-----AGKYSGGMKRR 773 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~~~~~~~~~v~~~L~~l~L~~----~~~~~~~-----~~~LSGGqKqR 773 (949)
+.+-|+||.|..-.. |.||.+.+... .....+...++++.+.|+.++|.| .+-.|.. ...||+|||||
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 458899999987666 99999987622 112222233556777788777753 0111222 24699999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
++.||-+.++|++-||||.|+++|......+.+.+++ .|.|.|=++|.-.. .+.-|.+.-|+.
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL-~kfHd~~L~~~g 641 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSL-WKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHH-HhhhhEEEEecC
Confidence 9999999999999999999999999999999888764 47899999999765 455677776654
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=1.7e-19 Score=188.65 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=108.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+.+.+|++++. |++++|+||||||||||+|+|+|... +...|.++... ++.+|.+.+|..+|++|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~--------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS--------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC--------ccCcccceEEEeccchh
Confidence 45788887776 79999999999999999999988543 12355554321 36677888999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
++.+.... ...+. +++.++++.+++ .+|+++++|||++|+|+..+..+
T Consensus 79 ~l~~~~s~---~~~e~-~~~~~iL~~~~~----------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 79 DLRDGISY---FYAEL-RRLKEIVEKAKK----------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred ccccccCh---HHHHH-HHHHHHHHhccC----------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 99763211 11222 456666665531 69999999999999999999876
Q ss_pred H-HHHHHh-cCCcEEEEEcCCHHHHHHh--cCEEEEE
Q 002236 805 W-NVVKRA-KQGRAIILTTHSMEEAEAL--CDRLGIF 837 (949)
Q Consensus 805 ~-~~L~~~-~~g~tIIltTH~meeae~l--~drI~Im 837 (949)
. .++++. ++|.++|++||++++++.+ .+++..+
T Consensus 127 ~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 4 567765 4589999999999999876 4555444
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=1.9e-18 Score=177.65 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 766 YSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 766 LSGGqKqRLslA~ALi----~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
||||||||+++|++++ .+|+++++|||++|||+.+++.+.+.|++. ++|+++|++||+++.++ .+||++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 799999999999999999999999999886 45799999999998775 7999998875
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.77 E-value=3.8e-19 Score=185.96 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=107.3
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHH
Q 002236 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (949)
Q Consensus 649 ~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~-~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~ 727 (949)
--.++++.+|++++|.|||||||||++++|++.. .+..|... - .-+..++++.|. +..
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~---------~~~~~i~~~dqi---~~~-------- 78 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-P---------AESASIPLVDRI---FTR-------- 78 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-c---------ccccccCCcCEE---EEE--------
Confidence 3445666689999999999999999999999543 22222110 0 001223332221 111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHH-H
Q 002236 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-N 806 (949)
Q Consensus 728 ~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~-~ 806 (949)
++.. +..+...+.+++++|| ++.+.+++.+|+++|||||++|+||..+..+. .
T Consensus 79 -----------------------~~~~--d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 79 -----------------------IGAE--DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred -----------------------ecCc--ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 1111 1234445677777776 77778899999999999999999999988774 4
Q ss_pred HHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 807 VVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 807 ~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
+++.. +.+.++|++||+++.++ .|+++..+.+|++...++..+
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 56655 45899999999988876 578999999999998887643
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=2.2e-18 Score=174.26 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=104.0
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEE-EcCCCCCCCCCCHHHHH
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHL 726 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~-~pQ~~~L~~~lTv~E~L 726 (949)
....++.+.++.+..|+||||+||||+++.+....-..+|.+... .++ +.|+ +|+...-+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~--------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL--------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE---------
Confidence 344556666677999999999999999999887766665554431 111 1111 22211110
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRN 802 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~----~P~vllLDEPTsGLDp~sr~ 802 (949)
+. ...+||+||+||+++|++|.. +|+++++|||++|+||..++
T Consensus 72 --------------------------i~-------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 --------------------------IF-------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred --------------------------eh-------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 10 002299999999999999986 78999999999999999999
Q ss_pred HHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 803 NLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 803 ~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
.+.+.+.+. ++|.++|++||+.+.++ .+||++.|..
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 999999875 44889999999999987 5899999864
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.76 E-value=2e-18 Score=190.83 Aligned_cols=181 Identities=28% Similarity=0.358 Sum_probs=148.1
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--------CCCCcceEEEcCeecCccHHHhhccEEEEcCCC-
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--------TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED- 714 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl--------~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~- 714 (949)
...+++||||++++||+++++|++||||||+++||.|. ++|++|.|.+--..+. ..+|-..
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~----------a~iPge~E 464 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS----------ALIPGEYE 464 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh----------hccCcccc
Confidence 45799999999999999999999999999999999984 6899999876432221 2344432
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC
Q 002236 715 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 794 (949)
Q Consensus 715 ~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs 794 (949)
.-|..-|+.||+.- .++ ......++|.+.|+.+.-...++.++||-|||.|+.||.++...|.+++.||=-|
T Consensus 465 p~f~~~tilehl~s------~tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 465 PEFGEVTILEHLRS------KTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred cccCchhHHHHHhh------ccC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 23446688888742 111 1235678999999987555677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHh-cCEEEEEeCCEE
Q 002236 795 GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEAL-CDRLGIFVDGSL 842 (949)
Q Consensus 795 GLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l-~drI~Im~~G~l 842 (949)
-||+.+...+..-|.++. .|.|.+++||..|...+| -|+++.+.-|+.
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 999999999999999863 499999999999999999 688888776654
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=6.4e-18 Score=209.96 Aligned_cols=131 Identities=24% Similarity=0.390 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHcCCC--
Q 002236 718 ETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP-- 784 (949)
Q Consensus 718 ~~lTv~E~L~~~~~l~g~~~----------~~~~~~v~~~L~~l~L~~~~~-~~~~~~~LSGGqKqRLslA~ALi~~P-- 784 (949)
-.|||.|.+.|...+ +.+. +++.++++ .|+.+||.+ . .|+++.+|||||||||.||+||..+|
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~--l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDY--LTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCC--CCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 457999998886554 2222 13444554 688899962 4 69999999999999999999999997
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
++++|||||+||||..++.++++|++++ +|.|||+++|+++++. .||||++| .+|+++..|+++++.+
T Consensus 511 ~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 511 VLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred cEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999975 5999999999999987 59999999 9999999999999854
No 408
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2.7e-17 Score=179.69 Aligned_cols=190 Identities=21% Similarity=0.315 Sum_probs=123.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----------------c-----------------------c
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----------------S-----------------------G 687 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt----------------s-----------------------G 687 (949)
.+++.++++.+| +.+|+|+|||||||++..|.-+.... . |
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~ 89 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGG 89 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCC
Confidence 456677888776 78999999999999998875443211 0 1
Q ss_pred --eEEEcCeecCccHHHh---hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh---HHHHHHHHHHHc-----CCC
Q 002236 688 --TAYVQGLDIRTDMDRI---YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA---LTQAVEESLKSV-----NLF 754 (949)
Q Consensus 688 --~I~i~G~di~~~~~~~---r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~---~~~~v~~~L~~l-----~L~ 754 (949)
.+++||..+.. ..++ ...|.+.|++..|.. .+..++..|.-++-+....+ ..++..+++++. |-.
T Consensus 90 ~~~~~ing~~~~~-l~~l~~~l~~i~~~~~~~~l~~-~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 90 GRKARLNGIKVRR-LSDLLGVLNAVWFAPEDLELVK-GSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred ceEEEECCeeccC-HHHHhCcCcEEEEecchhhhhc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22334443322 1222 234566666666653 35566666654433211111 111222222211 111
Q ss_pred CCCc-----ccccCCCCChhHHHHHHHHHHHc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 002236 755 HGGV-----ADKQAGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 820 (949)
Q Consensus 755 ~~~~-----~~~~~~~LSGGqKqRLslA~ALi---------~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIlt 820 (949)
.+.. .......+|+||||++++|++|+ ++|++++|||||++|||..++.+++.+++.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 0000 01234568999999999999985 8999999999999999999999999997653 57888
Q ss_pred cCCHHHHHHhc---CEEEEEeCCEE
Q 002236 821 THSMEEAEALC---DRLGIFVDGSL 842 (949)
Q Consensus 821 TH~meeae~l~---drI~Im~~G~l 842 (949)
+|+.+++..+| ++++.+++|++
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 88888888888 78999999986
No 409
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.3e-17 Score=207.04 Aligned_cols=132 Identities=27% Similarity=0.375 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHhhhcCCCc---------hhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHcCCC--c
Q 002236 718 ETLTGREHLLFYGRLKNLKG---------PALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP--K 785 (949)
Q Consensus 718 ~~lTv~E~L~~~~~l~g~~~---------~~~~~~v~~~L~~l~L~~~~~-~~~~~~~LSGGqKqRLslA~ALi~~P--~ 785 (949)
-.||+.|.+.|+..+.--.. +++.+++ +.|..+||.. . .++.+.+|||||+|||.||+||+.+| +
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~--l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ 509 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDY--LTLSRAAGTLSGGEAQRIRLATQIGSGLTGV 509 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccc--cccCCCcCcCCHHHHHHHHHHHHHhhCCCCc
Confidence 35899999988876531110 1222222 2467788852 3 68999999999999999999999986 8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
++||||||+||||..++.++++|+++ ++|.|||+++|+++++. .|||+++| ++|+++..|+++++..
T Consensus 510 llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 510 LYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999997 45999999999999987 89999999 8999999999999853
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=6e-18 Score=177.67 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=109.7
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
..+.+|+++++++|++++|.||||+||||++++++|+. +..++|.-. +.....+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~~v--pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGCFV--PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCCCc--chhhcCccChh
Confidence 57999999999999999999999999999999999874 233445311 33344555555
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
++. ..++.. +..++..+++|+||||+ +.+.+++.+|++++||||++|+||..+..+
T Consensus 74 ~I~---------------------~~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 74 RLL---------------------SRLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred hee---------------------EecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 552 233332 24567788999999975 677888999999999999999999776665
Q ss_pred -HHHHHHh-cCCcEEEEEcCCHHHHHHhcC
Q 002236 805 -WNVVKRA-KQGRAIILTTHSMEEAEALCD 832 (949)
Q Consensus 805 -~~~L~~~-~~g~tIIltTH~meeae~l~d 832 (949)
+.+++.+ +.|.++|++||+++.++.+++
T Consensus 130 ~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 130 SLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 4556664 458999999999999998775
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.6e-18 Score=188.09 Aligned_cols=221 Identities=22% Similarity=0.330 Sum_probs=169.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCeecCccH-H-
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDM-D- 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G--l~~ptsG~I~i~G~di~~~~-~- 701 (949)
.|.++|.+.+-.+ +....|.||.|-.|..+||+||||-|||||++-|+. +--|..=++.+.-+.+..+. .
T Consensus 264 DIKiEnF~ISA~G------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 4788888887653 578999999999999999999999999999999975 44455666777666653210 0
Q ss_pred ------HhhccEEEEcCCCCC-----CCCCCHHHHHH-HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 702 ------RIYTSMGVCPQEDLL-----WETLTGREHLL-FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 702 ------~~r~~iG~~pQ~~~L-----~~~lTv~E~L~-~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
.-.+++.+.-...-| -.+.|+.|.|. .+..++.+.....+.++.++|.-+|+.. +..+++...+|||
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk-EMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK-EMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh-hHhcCCccccCCc
Confidence 001112221111111 13467888775 3566776666667788899999999985 6789999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCH
Q 002236 770 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNP 848 (949)
Q Consensus 770 qKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~ 848 (949)
.|.|+|+||||..+|.+|.|||||+.||-.+...+-+.|+..+ +|.+|+|||-...+..|+.|+-+++-++. .-|+.
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999999999999999999999999999998877777776554 69999999999999999999999998886 34665
Q ss_pred HHHHHhc
Q 002236 849 KELKARY 855 (949)
Q Consensus 849 ~~Lk~~~ 855 (949)
.-.|..|
T Consensus 495 ~~FKKmY 501 (807)
T KOG0066|consen 495 TLFKKMY 501 (807)
T ss_pred HHHHHHH
Confidence 5554443
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.73 E-value=1.3e-16 Score=206.03 Aligned_cols=199 Identities=18% Similarity=0.191 Sum_probs=151.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh----------CCCCCCcceEEEcCeecCcc-----------HHHhh
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------GITRTTSGTAYVQGLDIRTD-----------MDRIY 704 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~----------Gl~~ptsG~I~i~G~di~~~-----------~~~~r 704 (949)
.=|+|++.+|+-|..+++.|.+|||||||++=.. |.. .-+--|.|+-.+|... .+.+|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 4589999999999999999999999999997433 222 1233477776666321 12222
Q ss_pred cc--------------------------------------EEEEcCCC-----------------CCC--------CCCC
Q 002236 705 TS--------------------------------------MGVCPQED-----------------LLW--------ETLT 721 (949)
Q Consensus 705 ~~--------------------------------------iG~~pQ~~-----------------~L~--------~~lT 721 (949)
+- |.|+|.-. .-| -+||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 11 11222210 111 1478
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC---CcEEEEeCCCCCCCH
Q 002236 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDP 798 (949)
Q Consensus 722 v~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~---P~vllLDEPTsGLDp 798 (949)
|.|-+.|+... +. -.+.-+.|+.+||.. -.+.++..+|||||.||+-||.-|..+ +.+++|||||+||++
T Consensus 1663 v~ea~~~F~~~-----~~-i~~~L~~L~~vGLgY-l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~ 1735 (1809)
T PRK00635 1663 IEEVAETFPFL-----KK-IQKPLQALIDNGLGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDN 1735 (1809)
T ss_pred HHHHHHHhhcc-----HH-HHHHHHHHHHcCCCe-eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCH
Confidence 88888887432 12 334567899999963 346899999999999999999999865 789999999999999
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 799 ASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 799 ~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
...+.+.+++.++ .+|.|||++.|+++.+.. ||+|+=| ..|+|++.|+|+++.+
T Consensus 1736 ~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1736 QQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999996 579999999999999987 9999988 4589999999999976
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.1e-16 Score=187.06 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---cEEEEeCCCCC
Q 002236 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTG 795 (949)
Q Consensus 719 ~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P---~vllLDEPTsG 795 (949)
+|||.|-..|+..... + .+.-+.|..+||.- -.+.+++.+|||||-||+-+|.-|.... .++||||||+|
T Consensus 783 ~MTveEA~~FF~~~p~-----I-~rkLqtL~dVGLgY-i~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 783 DMTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred hccHHHHHHHHhcchH-----H-HHHHHHHHHcCcce-EecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 4899999999865432 2 34456788899962 3468899999999999999999999888 99999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHHh
Q 002236 796 LDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 854 (949)
Q Consensus 796 LDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~~ 854 (949)
|-..-.+++.++|.++ .+|.|||++.|+|+-+.. ||.|+=| ..|+|++.|+|+++.+.
T Consensus 856 LH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 9999999999999996 679999999999998864 9999877 46899999999999863
No 414
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.69 E-value=3.1e-17 Score=185.75 Aligned_cols=180 Identities=23% Similarity=0.366 Sum_probs=138.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
+.|.++|+-..-+. ...++..++|+|++|--+-|+||||||||+|+|+|.|+-+...|...+-- +
T Consensus 480 ~gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~----------~ 544 (728)
T KOG0064|consen 480 NGIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR----------P 544 (728)
T ss_pred cceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC----------C
Confidence 46899999888874 35699999999999999999999999999999999999998777664321 2
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHh-----hhcCCCchhHHHHHHHHHHHcCCCCCCccccc---------CCCCChhH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYG-----RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGM 770 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~-----~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~---------~~~LSGGq 770 (949)
.+|-|+||.|..- .-|.||.+.+.- +-+|.+. +..+.+|+.+.|++ ...+- -..||||+
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~--i~qr~~g~da~~dWkd~LsgGe 617 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEH--ILQREGGWDAVRDWKDVLSGGE 617 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHH--HHHhccChhhhccHHhhccchH
Confidence 4599999988654 346666665432 2245543 34555666666642 12221 13699999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 828 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae 828 (949)
|||+.+||.+.++|+..+|||.|+++-+.....+++..+. -|-+.|-+||......
T Consensus 618 kQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk 673 (728)
T KOG0064|consen 618 KQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHH
Confidence 9999999999999999999999999999988888887654 3788999999987654
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.65 E-value=3.9e-16 Score=170.31 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=103.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc--cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~--~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~ 736 (949)
.-++|+||||||||||+++|+|+++|++|++.++|+++.. ...++.+.++++||++ +...++|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence 5789999999999999999999999999999999999863 3456667788999975 4455555554210
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcE
Q 002236 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 816 (949)
Q Consensus 737 ~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~t 816 (949)
. .|+ ..+++| .+|+++++|||++ ++.+..+++..++|.+
T Consensus 183 -------~-----------------------~~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~ 221 (270)
T TIGR02858 183 -------A-----------------------EGM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVS 221 (270)
T ss_pred -------H-----------------------HHH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCE
Confidence 0 011 223333 5999999999974 3445555555667999
Q ss_pred EEEEcCCHHH--H-----------HHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 817 IILTTHSMEE--A-----------EALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 817 IIltTH~mee--a-----------e~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+|+|||+.+. + ..++||+++|++|+ ..|+++++
T Consensus 222 vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 222 IIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 9999997654 4 35689999999887 66666544
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.63 E-value=1.5e-15 Score=168.91 Aligned_cols=176 Identities=30% Similarity=0.398 Sum_probs=140.9
Q ss_pred cceeeeeEEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCC
Q 002236 645 KVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 719 (949)
Q Consensus 645 ~~al~~lSl~v~~G-----ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~ 719 (949)
+.-+.+..|.|+.| |++..||.||.||||+++||+|.++|++|. ++. .-+++|=||.-.-=..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccccCcccc
Confidence 55677788888887 589999999999999999999999999873 111 1246777776543334
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 002236 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 720 lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~ 799 (949)
-|||+-+.- .++. .-...+-+.+.++-+.++ ...|+.+.+||||++||+++|.+|=..+++.+.|||++-||.+
T Consensus 417 ~tvR~ll~~--kIr~--ay~~pqF~~dvmkpL~ie--~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSe 490 (592)
T KOG0063|consen 417 GTVRQLLHT--KIRD--AYMHPQFVNDVMKPLQIE--NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSE 490 (592)
T ss_pred chHHHHHHH--HhHh--hhcCHHHHHhhhhhhhHH--HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChH
Confidence 588876542 2221 111235567777777776 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 800 SRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 800 sr~~l~~~L~~--~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
.|..--..+++ ++.++|-.++.||.-.+.-++||+++..
T Consensus 491 QRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 491 QRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 99999999988 3678999999999999999999998765
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=8e-16 Score=162.99 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=107.4
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+.+.+|++++.++ ++++|.||||+||||++|+++++.-.. + .|..+. ..+.+++++.| ++..+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp----~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVP----ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeec----cccceecceee---EeccCCchh
Confidence 4689999999987 999999999999999999998754221 1 122221 12345777654 566777776
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh--hHHHHHHHHHHHcCCCcEEEEeCC---CCCCCHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG--GMKRRLSVAISLIGNPKVVYMDEP---STGLDPA 799 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSG--GqKqRLslA~ALi~~P~vllLDEP---TsGLDp~ 799 (949)
++... .|. .+.++++-+.+.+.+|++++|||| |+++|+.
T Consensus 85 ~ls~g------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~ 128 (216)
T cd03284 85 DLAGG------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGL 128 (216)
T ss_pred hhccC------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Confidence 66421 111 122234444444679999999999 8888886
Q ss_pred HHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 800 SRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 800 sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+. .+.+++.+ +. +.++|++||+. +..+++|++..+.+|++...+..++++
T Consensus 129 ~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 129 SI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 52 34444443 34 78999999997 456689998888999998877765543
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.57 E-value=8.2e-16 Score=158.92 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRL 834 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l-~~~L~~~-~-~g~tIIltTH~meeae~l~drI 834 (949)
..++..+++|+|++|...++ ..+.+|+++|+|||++|+||..+..+ +.+++.. + .+.++|++||+++ +.++||+.
T Consensus 54 ~~~~~~s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~ 131 (185)
T smart00534 54 SLAQGLSTFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEH 131 (185)
T ss_pred chhccccHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcC
Confidence 56778889999998743333 33569999999999999999988776 4556664 3 3889999999995 66788864
Q ss_pred EEEeCCEEEE
Q 002236 835 GIFVDGSLQC 844 (949)
Q Consensus 835 ~Im~~G~l~~ 844 (949)
.-++++++..
T Consensus 132 ~~v~~~~~~~ 141 (185)
T smart00534 132 PGVRNLHMSA 141 (185)
T ss_pred ccceEEEEEE
Confidence 4445555544
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.56 E-value=1.2e-13 Score=157.03 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=69.5
Q ss_pred CCCCChhHHHHHHHHHHHc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhc--
Q 002236 763 AGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC-- 831 (949)
Q Consensus 763 ~~~LSGGqKqRLslA~ALi---------~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~-- 831 (949)
...+|.||||++++|++|+ ++|+|++||||+++||+..++.+++.+.+. +..+++|||+++.+..++
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 3579999999999999985 899999999999999999999999988753 458999999999888775
Q ss_pred CEEEEEeCCEE
Q 002236 832 DRLGIFVDGSL 842 (949)
Q Consensus 832 drI~Im~~G~l 842 (949)
+++..|++|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 57999999987
No 420
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=7.9e-13 Score=153.15 Aligned_cols=177 Identities=19% Similarity=0.277 Sum_probs=119.7
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---------cHHHhhccEEEEcCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---------DMDRIYTSMGVCPQEDL 715 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---------~~~~~r~~iG~~pQ~~~ 715 (949)
..+++++ +.+.+||+++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-+. +...+++.++++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5699999 9999999999999999999999999999999999999996654321 22346688999987543
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHH-HHHHHHHHHcCCCcEEEEeCCC
Q 002236 716 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMK-RRLSVAISLIGNPKVVYMDEPS 793 (949)
Q Consensus 716 L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSG-GqK-qRLslA~ALi~~P~vllLDEPT 793 (949)
+..+...-. ..--.+.|.+..-|-. . =-...+++- -|- |-+++ ++++|+ .|
T Consensus 225 -----~~~~r~~~~---------~~a~~iAEyfr~~g~~---V-ll~~Dsltr~A~A~rEisl---~~ge~P------~~ 277 (438)
T PRK07721 225 -----PALMRIKGA---------YTATAIAEYFRDQGLN---V-MLMMDSVTRVAMAQREIGL---AVGEPP------TT 277 (438)
T ss_pred -----CHHHHHHHH---------HHHHHHHHHHHHCCCc---E-EEEEeChHHHHHHHHHHHH---hcCCCC------cc
Confidence 222222110 0111222333322311 0 000111110 000 11121 123332 27
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCc-----EEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 794 TGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 794 sGLDp~sr~~l~~~L~~~~---~g~-----tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+|+||.....++++++++. +|. ||++.+|||++ .+||++.+|.+|+++..++..+-
T Consensus 278 ~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 278 KGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence 8999999999999999864 475 99999999995 78999999999999999998763
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=3.6e-13 Score=142.57 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=91.7
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCC-CCCCHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTGR 723 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G--l~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~-~~lTv~ 723 (949)
+=+|++++=..+.+++|.||||+||||++|.+.. ++ +..|...... ...++|..|...-+ ...++.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeeeeeeeCCccChh
Confidence 4455555422237999999999999999999984 33 5566544321 13477777753211 111111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHH-
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN- 802 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~- 802 (949)
+++ +++ .-+-||+++|++++.+|++++||||++|+||....
T Consensus 87 ~~~-------------------------------------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~ 128 (213)
T cd03281 87 SGQ-------------------------------------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAG 128 (213)
T ss_pred hcc-------------------------------------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHH
Confidence 111 001 23458899999999999999999999999997654
Q ss_pred HHHHHHHHh-cC---CcEEEEEcCCHHHHHHhc
Q 002236 803 NLWNVVKRA-KQ---GRAIILTTHSMEEAEALC 831 (949)
Q Consensus 803 ~l~~~L~~~-~~---g~tIIltTH~meeae~l~ 831 (949)
.++.++++. ++ +.++|++||+.+.++.+.
T Consensus 129 ~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 129 LLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 446777775 33 248999999999988754
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.46 E-value=1e-13 Score=170.56 Aligned_cols=132 Identities=22% Similarity=0.294 Sum_probs=95.1
Q ss_pred eeEEEEeCC-cEEEEECCCCCcHHHHHHHHhCC-CCCCcceEEEcCeecCccHHHhhccEEEEcCCCC-CCCCCCHHHHH
Q 002236 650 GLSLALPSG-ECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHL 726 (949)
Q Consensus 650 ~lSl~v~~G-ei~gLLG~NGAGKTTLlk~L~Gl-~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~-L~~~lTv~E~L 726 (949)
.+++.+.+| ++++|.||||+||||++|+|+|. +.+..|- ++|.+.. .++ ..+.+
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------~Vpa~~~~~~~---~~d~i 369 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------PIPANEHSEIP---YFEEI 369 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------------------CccCCcccccc---chhhe
Confidence 478888877 99999999999999999999987 3333331 4444321 111 11111
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH-H
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-W 805 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l-~ 805 (949)
+..+ +.. +......+++|+||+|+..+++++ .+|+++|||||++|+||.....+ +
T Consensus 370 --~~~i-------------------~~~--~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ 425 (771)
T TIGR01069 370 --FADI-------------------GDE--QSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAI 425 (771)
T ss_pred --eeec-------------------ChH--hHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHH
Confidence 0111 000 122345678999999999998877 78999999999999999999999 5
Q ss_pred HHHHHh-cCCcEEEEEcCCHHHHH
Q 002236 806 NVVKRA-KQGRAIILTTHSMEEAE 828 (949)
Q Consensus 806 ~~L~~~-~~g~tIIltTH~meeae 828 (949)
.++..+ +.|.++|+|||+.+...
T Consensus 426 aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 426 SILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHhcCCEEEEECChHHHHH
Confidence 677765 46899999999988754
No 423
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=1.7e-13 Score=144.10 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=89.3
Q ss_pred EEEEECCCCCcHHHHH-HHHhCCCCC-----------------CcceEEEcCeecCccHHHhhccEEEEcCCCCC--CCC
Q 002236 660 CFGMLGPNGAGKTTFI-SMMIGITRT-----------------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL--WET 719 (949)
Q Consensus 660 i~gLLG~NGAGKTTLl-k~L~Gl~~p-----------------tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L--~~~ 719 (949)
-++|+|+||||||||+ +.++|..++ +.|.+.+.+.|+...........+|..+.+.+ .-+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 4799999999999999 689998764 56888888888753211100112333333211 111
Q ss_pred CCH---HHHHHH-Hhhh----cCC-------C----chhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHH
Q 002236 720 LTG---REHLLF-YGRL----KNL-------K----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAI 778 (949)
Q Consensus 720 lTv---~E~L~~-~~~l----~g~-------~----~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG--qKqRLslA~ 778 (949)
+|= .+++.. +..+ ..+ + .........+..+..++. +. ..+..+|+ +++++.||+
T Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~--e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 91 VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YY--DISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EE--EEeCCCCCCHHHHHHHHHH
Confidence 221 111111 1000 010 0 111111222334444431 22 23334444 899999999
Q ss_pred HHcCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 002236 779 SLIGNPKVVYMDEPS-----TGLDPASRNNLWNVVKRAK 812 (949)
Q Consensus 779 ALi~~P~vllLDEPT-----sGLDp~sr~~l~~~L~~~~ 812 (949)
+++.+|+++++|||| +||||..++.+++.+++++
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999998864
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=2.9e-13 Score=142.86 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=99.6
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHh---CCCCCCcceEEEcCeecCc---cHHHhhccEEEEcCCCCCC-----
Q 002236 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQEDLLW----- 717 (949)
Q Consensus 649 ~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~---Gl~~ptsG~I~i~G~di~~---~~~~~r~~iG~~pQ~~~L~----- 717 (949)
+...+.+.+ .+..|+||||+||||++..|. |.-...+.+..-...-|.. ........+...++...-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 566777765 599999999999999999993 3211211111000000000 0011122333333322111
Q ss_pred CCCCHHHHHHHHh----hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----cCCCcEEEE
Q 002236 718 ETLTGREHLLFYG----RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYM 789 (949)
Q Consensus 718 ~~lTv~E~L~~~~----~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL----i~~P~vllL 789 (949)
....+...+.--. .+.+ .....+.+.+.++..++.. ..||||||..++||.-| ..+.++++|
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~--~~~~~~~~~~~l~~~~i~~--------~~lSgGEk~~~~Lal~lA~~~~~~~p~~il 164 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKING--KKVRLKDLEELLPEVGISP--------EFLSGGEKSLVALALLLALQRYKPSPFLIL 164 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETT--EEE-HHHHHHHHHCTTTTT--------TGS-HHHHHHHHHHHHHHHHTCS--SEEEE
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccc--------cccccccccccccccccccccccccccccc
Confidence 0000000000000 0111 1123356677777777752 19999999999998654 467899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 790 DEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 790 DEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im 837 (949)
|||.++||+..++.++++|++..++.-+|+|||+-+.+ ..||+.+.+
T Consensus 165 DEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~-~~a~~~~~v 211 (220)
T PF02463_consen 165 DEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMF-EDADKLIGV 211 (220)
T ss_dssp ESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHH-TT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99999999999999999999987778899999996655 457886654
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.38 E-value=7.8e-13 Score=147.52 Aligned_cols=180 Identities=22% Similarity=0.284 Sum_probs=125.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc--cEEEEcC---CCCCCCCCCHHHHHHHHh
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT--SMGVCPQ---EDLLWETLTGREHLLFYG 730 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~--~iG~~pQ---~~~L~~~lTv~E~L~~~~ 730 (949)
.+|++.|++|.||-||||-+++|+|-.+|.-|.-- ++-+-++-....|. --+| ++ ++.+-.-....+-..+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~y-ftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNY-FTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhh-hhhhccccccCcCChHHHHHHHH
Confidence 57999999999999999999999999999877531 11111100000000 0001 01 011100001111111111
Q ss_pred hhcC-----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHH
Q 002236 731 RLKN-----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 805 (949)
Q Consensus 731 ~l~g-----~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~ 805 (949)
..+| +.....++..+++++.++|. ...++.+.+||||+-||.++|++.+.+.++.++|||++-||...|...-
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~--~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLN--NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHh--hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 1221 11222334566777888886 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 806 NVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 806 ~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
..|+.+ ..++=||++.||++..+-+.|-+.++..
T Consensus 254 ~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999985 6789999999999999999999988853
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=1.6e-11 Score=130.86 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=93.5
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G-l~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
+.+.+|+++++.+|++++|.||||+||||++++++| .+.+..|..... .. -.++|..| ++-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~---------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS---------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc---------eEEeccce---EEEEecCc
Confidence 468999999999999999999999999999999999 677888875433 21 12344333 11111111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 803 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~ 803 (949)
|.+. ...++++ .+-++++-+..-+.+++++|||||.+|.|+.....
T Consensus 85 d~~~---------------------------------~~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 85 DSIQ---------------------------------HGMSTFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred cccc---------------------------------cccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 1110 0001111 12233444444566899999999999999887777
Q ss_pred H-HHHHHHh-cC-CcEEEEEcCCHHHHHHh
Q 002236 804 L-WNVVKRA-KQ-GRAIILTTHSMEEAEAL 830 (949)
Q Consensus 804 l-~~~L~~~-~~-g~tIIltTH~meeae~l 830 (949)
+ +.+++.+ +. +.++|++||+.+.++..
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 4 6677764 33 78999999999987643
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.32 E-value=2.8e-12 Score=158.47 Aligned_cols=150 Identities=21% Similarity=0.300 Sum_probs=104.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEE-EEcCCCCCCCCCCHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREH 725 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG-~~pQ~~~L~~~lTv~E~ 725 (949)
+=+|+++. ..+.++.|.|||++||||++|.+.... +..++| +||-... ..+.+.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccce
Confidence 33444443 346789999999999999999985321 122334 4444321 01111222
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHH
Q 002236 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 805 (949)
Q Consensus 726 L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~ 805 (949)
+ +. .+|-. +...+..+++|+||+|++.+++++ .+|+++|||||++|+||..+..+.
T Consensus 374 i--~~-------------------~ig~~--~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 374 I--FA-------------------DIGDE--QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred E--EE-------------------ecCCc--cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence 1 01 12221 244567789999999999999998 899999999999999999999886
Q ss_pred H-HHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 806 N-VVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 806 ~-~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
. ++..+ +.|.++|+|||+.+.+...+++..++ ++.+..
T Consensus 430 ~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 430 ISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 5 55554 45899999999999998888877665 455554
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.31 E-value=2.9e-12 Score=121.07 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHH-HhhccEEEEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~-~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
+.||++++|++++||+++|+||||||||||++++. +|++.++|.|+..... +.++.++++||+ ++. .|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 47999999999999999999999999999999986 8999999999865433 345667777777 554 3899
Q ss_pred HHHHH
Q 002236 724 EHLLF 728 (949)
Q Consensus 724 E~L~~ 728 (949)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=6e-12 Score=161.03 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=77.1
Q ss_pred cccccCCCCChhHHHHHHHHHHHcC----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHH
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLIG----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE 826 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi~----------~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~mee 826 (949)
..++++++|||||++|+++|+||+. +|+++||||||+|||+.++..++++|.++. .|++|++|||++++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 4567899999999999999999984 799999999999999999999999998864 68999999999999
Q ss_pred HHHhcCEEEEEeCC
Q 002236 827 AEALCDRLGIFVDG 840 (949)
Q Consensus 827 ae~l~drI~Im~~G 840 (949)
.+.+||||.|+..|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 99999999999764
No 430
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.29 E-value=1.1e-11 Score=142.79 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=127.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
+.+..+.+++.|.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 129 ~~~~r~~i~~~l~T-----GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFET-----GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCC-----CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35677788888863 25689985 99999999999999999999999999999999999887766532
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--- 781 (949)
.+++|.+..... .-++.. ...=....+.|.|+|+|...+.+.+
T Consensus 195 ---------------~ev~e~~~~~l~------------------~~gl~~-tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 ---------------REVKDFIRKELG------------------EEGMRK-SVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ---------------ccHHHHHHHHhh------------------hcccce-eEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 245555432111 112211 1122456788999999999999988
Q ss_pred ----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 782 ----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 782 ----~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
+++-++++||||...|+. |+++..+.+.. .|.+..+.||. .++++|.....+|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l----~~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM----KKLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc----hhHHHHhccCCCcceEEEEE
Confidence 999999999999999996 88888777653 58899998994 34555666667888876544
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=9.4e-12 Score=149.49 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=72.8
Q ss_pred cCCCCChhHHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 762 QAGKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 762 ~~~~LSGGqKqRLslA~ALi~~----P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im 837 (949)
....|||||+||+++|++++.. |+++|||||++|||+..+..+.+.|+++.++++||++||+++.+. .|||+++|
T Consensus 437 l~~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l 515 (563)
T TIGR00634 437 LAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKV 515 (563)
T ss_pred hhhhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEE
Confidence 3468999999999999999985 699999999999999999999999999877999999999999885 79999999
Q ss_pred eCCE
Q 002236 838 VDGS 841 (949)
Q Consensus 838 ~~G~ 841 (949)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9874
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.25 E-value=1.3e-11 Score=132.10 Aligned_cols=148 Identities=23% Similarity=0.292 Sum_probs=91.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF-ISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTL-lk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+.+++|.+.+++ .+++|+++.|.|+|||||||+ ++++.|+.++....+++...
T Consensus 7 ~~~~~~ld~~l~g---------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e---------- 61 (230)
T PRK08533 7 ELSRDELHKRLGG---------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ---------- 61 (230)
T ss_pred EEEEeeeehhhCC---------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----------
Confidence 3567888888863 278999999999999999999 79999987755444444422
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 781 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--- 781 (949)
.+..+.+....++ |.. . ++....=.+. ..+-. ..+|+++.++-.+++.+-
T Consensus 62 ---------------~~~~~~~~~~~~~-g~~---~----~~~~~~~~l~---~~~~~-~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 62 ---------------LTTTEFIKQMMSL-GYD---I----NKKLISGKLL---YIPVY-PLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred ---------------CCHHHHHHHHHHh-CCc---h----HHHhhcCcEE---EEEec-ccccChHHHHHHHHHHHHHHH
Confidence 1334444333221 111 1 1111110110 11111 235666544433333222
Q ss_pred -CCCcEEEEeCCCCCC----CHHHHHHHHHHHHHh-cCCcEEEEEcCCHHH
Q 002236 782 -GNPKVVYMDEPSTGL----DPASRNNLWNVVKRA-KQGRAIILTTHSMEE 826 (949)
Q Consensus 782 -~~P~vllLDEPTsGL----Dp~sr~~l~~~L~~~-~~g~tIIltTH~mee 826 (949)
.+|+++++||||+++ |+..++.+++.++++ ++|.|+++| |++.+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 379999999999999 899999999999886 457766665 55543
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=1.1e-11 Score=148.55 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc----------CCCcEEEEeCCC-CCCCHHHHHHHHHHHHH
Q 002236 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----------GNPKVVYMDEPS-TGLDPASRNNLWNVVKR 810 (949)
Q Consensus 742 ~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi----------~~P~vllLDEPT-sGLDp~sr~~l~~~L~~ 810 (949)
+..+..++..|.. +..+.+||||||||++||+||+ .+|+++|||||| ++||+.++..+++.|.+
T Consensus 450 ~~~~~~~~~~g~~-----~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 450 EEFNETIKSRGRE-----DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred hhhhhHHhcCCCC-----ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 3444556666553 4478899999999999999987 699999999998 78999999999999998
Q ss_pred hcCCcEEEEEcCCHHHHHHhcCEEEEEeC-CEE
Q 002236 811 AKQGRAIILTTHSMEEAEALCDRLGIFVD-GSL 842 (949)
Q Consensus 811 ~~~g~tIIltTH~meeae~l~drI~Im~~-G~l 842 (949)
. +|++||++||+.+..+ .|||+++|.+ |+.
T Consensus 525 ~-~~~~iiiish~~~~~~-~~d~~~~l~~~~~~ 555 (562)
T PHA02562 525 L-KDTNVFVISHKDHDPQ-KFDRHLKMEKVGRF 555 (562)
T ss_pred C-CCCeEEEEECchhchh-hhhcEEEEEEECCe
Confidence 8 7899999999977664 6899999986 544
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.22 E-value=8.3e-12 Score=127.54 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=95.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~ 739 (949)
.++|.|+||+||||+++.+.+.+.+ .| +.+.|.-... .....+..|+...+ +. .+ .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~-~~~~~~~~~~~~~~--~~---------------~~---~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEE-VREGGKRIGFKIID--LD---------------TG---E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHH-HHhcCCccceEEEE--cC---------------CC---C-
Confidence 4789999999999999999887655 45 2322221110 00000111211110 00 00 0
Q ss_pred HHHHHHHHHHHcCC-CCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCcE
Q 002236 740 LTQAVEESLKSVNL-FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRAKQGRA 816 (949)
Q Consensus 740 ~~~~v~~~L~~l~L-~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDE--PTsGLDp~sr~~l~~~L~~~~~g~t 816 (949)
...+...+. .. ....+....+||+++.+..+++..+.+|+++++|| |+.++|+..++.+.+++ +.|++
T Consensus 58 -----~~~l~~~~~~~~-~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~ 128 (174)
T PRK13695 58 -----EGILARVGFPSR-PRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKP 128 (174)
T ss_pred -----eEEccccCCCCC-CceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCe
Confidence 111222222 11 12345566799999999999999999999999999 55566655544444443 56899
Q ss_pred EEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 817 IILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 817 IIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
+|+++|+ ..+..++|||..+.+|++...
T Consensus 129 ~i~v~h~-~~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 129 VIATLHR-RSVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred EEEEECc-hhhHHHHHHHhccCCcEEEEE
Confidence 9999999 466678999999999998654
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=99.22 E-value=2.7e-10 Score=129.27 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHHHHc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEE
Q 002236 764 GKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 834 (949)
Q Consensus 764 ~~LSGGqKqRLslA~ALi---------~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI 834 (949)
..+|+||||++.+|+.|+ ++|++++||||+++||+..++.+++.|.... .++|-+|+ ....||++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceE
Confidence 358999999999999999 9999999999999999999999999986543 24444443 34579999
Q ss_pred EEEeCCEEEE
Q 002236 835 GIFVDGSLQC 844 (949)
Q Consensus 835 ~Im~~G~l~~ 844 (949)
+.+.+|++.-
T Consensus 336 ~~~~~~~~~~ 345 (349)
T PRK14079 336 LRIEAGVFTP 345 (349)
T ss_pred EEEeccEecC
Confidence 9999998754
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=3.5e-11 Score=127.84 Aligned_cols=141 Identities=14% Similarity=0.210 Sum_probs=92.5
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+.+-+|++|+.++|++++|.||||+||||+++++++..-... -|..+... +.+++ -.+.++..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~vpa~----~~~i~---~~~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDVPAK----SMRLS---LVDRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCccCcc----ccEec---cccEEEEecCccc
Confidence 468999999999999999999999999999999987532210 01111100 01111 1122222222222
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
++.. .-+++. .+-++++-....+.+|++++||||.+|+||.....+
T Consensus 85 ~~~~---------------------------------~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l 130 (218)
T cd03286 85 DIMK---------------------------------GESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAI 130 (218)
T ss_pred cccc---------------------------------CcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence 2210 001111 233445555555678999999999999999999888
Q ss_pred HHH-HHHh-cC-CcEEEEEcCCHHHHHHhc
Q 002236 805 WNV-VKRA-KQ-GRAIILTTHSMEEAEALC 831 (949)
Q Consensus 805 ~~~-L~~~-~~-g~tIIltTH~meeae~l~ 831 (949)
... ++.+ +. +.++|++||+++.++.++
T Consensus 131 a~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 131 AHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 887 5554 33 899999999999998876
No 437
>PRK10869 recombination and repair protein; Provisional
Probab=99.19 E-value=5.4e-11 Score=142.32 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=71.6
Q ss_pred CCCCChhHHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 763 AGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 763 ~~~LSGGqKqRLslA~ALi~----~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
.+.|||||+||++||++++. +|+++|+|||++|||+..+..+.+.|+++.++++||++||++..+ ++||+.+.+.
T Consensus 428 ~k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 428 AKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hhhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEe
Confidence 34799999999999999997 689999999999999999999999999987789999999999887 6899999998
Q ss_pred CCE
Q 002236 839 DGS 841 (949)
Q Consensus 839 ~G~ 841 (949)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.17 E-value=1.2e-11 Score=133.95 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=113.2
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE--EEc--CeecCccHHHhhccE---EEEcCCCCCCCC
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQ--GLDIRTDMDRIYTSM---GVCPQEDLLWET 719 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I--~i~--G~di~~~~~~~r~~i---G~~pQ~~~L~~~ 719 (949)
|+|.+ +.+.+||..+|+|++|+|||||+++|.+......+++ ++. |.. ..+..++.+.+ -++-+.+.
T Consensus 6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~~---- 79 (249)
T cd01128 6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFDE---- 79 (249)
T ss_pred heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCCC----
Confidence 44433 5788999999999999999999999999988764433 322 211 11233333332 23333332
Q ss_pred CCHHHHHHH-------Hh--hhcCCCc----hhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--------HHHHHHHH
Q 002236 720 LTGREHLLF-------YG--RLKNLKG----PALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--------KRRLSVAI 778 (949)
Q Consensus 720 lTv~E~L~~-------~~--~l~g~~~----~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq--------KqRLslA~ 778 (949)
...++... .. +-.|... +++ .+..+..+.+.+ .....+|||+ +||+++|+
T Consensus 80 -~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~-------~~G~~~sgG~~~~~~~~~~q~~~~Ar 150 (249)
T cd01128 80 -PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVP-------PSGKILSGGVDANALHKPKRFFGAAR 150 (249)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhccc-------cCCCCCCCCcChhhhhhhHHHHHHhc
Confidence 12222211 00 1112110 111 122223333333 2334579999 99999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNN-LWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~-l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
++..+++|.+| ||+.+|+.+... +. +.+.+ .++|.|+.||.+.+.. ..|.|.+|+.|+.
T Consensus 151 ~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr 211 (249)
T cd01128 151 NIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTR 211 (249)
T ss_pred CCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCc
Confidence 99999999999 999999766554 43 44555 6899999999999876 5899999999987
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.16 E-value=8.9e-11 Score=121.82 Aligned_cols=66 Identities=29% Similarity=0.394 Sum_probs=54.4
Q ss_pred cCCCCChhHHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHH
Q 002236 762 QAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEA 827 (949)
Q Consensus 762 ~~~~LSGGqKqRLslA~ALi~~P---~vllLDEPTsGLDp~sr~~l~~~L~~~~~-g~tIIltTH~meea 827 (949)
....+|.|+||.+.++.++...+ .++++|||-++|+|...+.+.+.|++..+ +.-||+|||+...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35567999999999988888776 99999999999999999999999988755 88999999997643
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.15 E-value=2e-10 Score=117.62 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=69.9
Q ss_pred cccccCCCCChhHHH------HHHHHHHHcCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHh-cCCcEEEEEcCCHHH-
Q 002236 758 VADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLD---PASRNNLWNVVKRA-KQGRAIILTTHSMEE- 826 (949)
Q Consensus 758 ~~~~~~~~LSGGqKq------RLslA~ALi~~P~vllLDEPTsGLD---p~sr~~l~~~L~~~-~~g~tIIltTH~mee- 826 (949)
..+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.++++.+ +.|.|+|+++|..+.
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~ 143 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 568888999999998 6666666778999999999999999 88899999988886 458999999998875
Q ss_pred --------HHHhcCEEEEEe
Q 002236 827 --------AEALCDRLGIFV 838 (949)
Q Consensus 827 --------ae~l~drI~Im~ 838 (949)
++.+||.++.|+
T Consensus 144 ~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 144 GTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcccCcCceeEeeeEEEEEE
Confidence 678899998886
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.11 E-value=7.1e-10 Score=132.54 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=115.0
Q ss_pred CCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh---HHHHHHH------HHHHcC
Q 002236 682 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA---LTQAVEE------SLKSVN 752 (949)
Q Consensus 682 ~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~---~~~~v~~------~L~~l~ 752 (949)
+++..=.|.|+|.+|.. +..|++.|.+.|+..+. ++.++ .++.+.+ .|..+|
T Consensus 409 L~~eal~v~i~g~~i~e------------------~~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VG 469 (935)
T COG0178 409 LKPEALAVKIAGKNIAE------------------ISEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVG 469 (935)
T ss_pred cChhhheeEECCccHHH------------------HhhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555567888866542 23478888888877665 22111 1222222 355578
Q ss_pred CCCCCcccccCCCCChhHHHHHHHHHHHcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCHHHHHH
Q 002236 753 LFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEA 829 (949)
Q Consensus 753 L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~--P~vllLDEPTsGLDp~sr~~l~~~L~~~~~-g~tIIltTH~meeae~ 829 (949)
|.. --+++.+.+|||||.||+-+|.-+=.+ -=+++||||+.||-|.--.++.+.|+++++ |.|+|++.||-+.+.
T Consensus 470 L~Y-LtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~- 547 (935)
T COG0178 470 LGY-LTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR- 547 (935)
T ss_pred cCc-ccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-
Confidence 852 236899999999999999999988655 247899999999999999999999999865 999999999976665
Q ss_pred hcCEEEEE------eCCEEEEEcCHHHHHHh
Q 002236 830 LCDRLGIF------VDGSLQCIGNPKELKAR 854 (949)
Q Consensus 830 l~drI~Im------~~G~l~~~Gs~~~Lk~~ 854 (949)
.||+|+=| +.|++++.|+++++++.
T Consensus 548 ~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 548 AADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred hcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 59999876 67999999999999754
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.10 E-value=2.3e-10 Score=133.72 Aligned_cols=149 Identities=20% Similarity=0.317 Sum_probs=105.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
++++.++.+++|++++|+||||+||||++..|++.+....|. ++++++.++. ...++.|+|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHHH
Confidence 455566667789999999999999999999999987766653 2578888875 457899999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH-HHHHHHHHcCCC-----cEEEEeCCCCCCCHHH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLIGNP-----KVVYMDEPSTGLDPAS 800 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq-RLslA~ALi~~P-----~vllLDEPTsGLDp~s 800 (949)
.+|+++.|++....+...+..++..++.+ +....+.+...+++. .+.-..+++.++ .+|+||+++.+
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d--~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~----- 378 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLALSELRN--KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG----- 378 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHHHhccC--CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-----
Confidence 99999998876554555556666677753 456677775444432 334555666665 68999999887
Q ss_pred HHHHHHHHHHhc-CCcEEEEEcC
Q 002236 801 RNNLWNVVKRAK-QGRAIILTTH 822 (949)
Q Consensus 801 r~~l~~~L~~~~-~g~tIIltTH 822 (949)
..+.+.++..+ .+.+=++.|+
T Consensus 379 -~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 -DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred -HHHHHHHHHhccCCCCEEEEeC
Confidence 44566666554 3444444455
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.09 E-value=2.2e-10 Score=146.52 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=75.0
Q ss_pred ccccCCCCChhHHHHHHHHHHHcC--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHH
Q 002236 759 ADKQAGKYSGGMKRRLSVAISLIG--------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 829 (949)
Q Consensus 759 ~~~~~~~LSGGqKqRLslA~ALi~--------~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~ 829 (949)
.++++.+|||||++|++||+||+. +|+++|+||||+|||+.+++.+++.|..+ +.|++|+++||..+.+++
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 458899999999999999999995 89999999999999999999999999987 469999999999999999
Q ss_pred hcCEEEEEeC
Q 002236 830 LCDRLGIFVD 839 (949)
Q Consensus 830 l~drI~Im~~ 839 (949)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9999988875
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.07 E-value=3e-10 Score=143.27 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=69.1
Q ss_pred cccCCCCChhHHH------HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcC
Q 002236 760 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 832 (949)
Q Consensus 760 ~~~~~~LSGGqKq------RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~d 832 (949)
++++..|||||++ |+++|++++++|++++|||||+|||+..+..+.++|... .++.+||++||+++. ...||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 4678899999999 455566888999999999999999999999999999885 457899999999875 56799
Q ss_pred EEEEEeC
Q 002236 833 RLGIFVD 839 (949)
Q Consensus 833 rI~Im~~ 839 (949)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999983
No 445
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=4.8e-10 Score=146.64 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=65.7
Q ss_pred cccCCCCChhHHH------HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh------cCCcEEEEEcCCHHHH
Q 002236 760 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQGRAIILTTHSMEEA 827 (949)
Q Consensus 760 ~~~~~~LSGGqKq------RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~------~~g~tIIltTH~meea 827 (949)
....+.||||||| |++||+|++.+|++++|||||+|||+.++..+.+.|..+ ..|.+||++||+++++
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 3455789999999 999999999999999999999999999999999988764 1378999999999999
Q ss_pred HHhcC
Q 002236 828 EALCD 832 (949)
Q Consensus 828 e~l~d 832 (949)
..+|.
T Consensus 1274 ~~~~~ 1278 (1311)
T TIGR00606 1274 ELLGR 1278 (1311)
T ss_pred HHHhh
Confidence 99874
No 446
>PRK01156 chromosome segregation protein; Provisional
Probab=99.02 E-value=1.3e-09 Score=137.76 Aligned_cols=96 Identities=24% Similarity=0.257 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCCC--------------cccccCCCCChhHHHHHHH------HHHHcCCCcEEEEeCCCCCCCHHHH
Q 002236 742 QAVEESLKSVNLFHGG--------------VADKQAGKYSGGMKRRLSV------AISLIGNPKVVYMDEPSTGLDPASR 801 (949)
Q Consensus 742 ~~v~~~L~~l~L~~~~--------------~~~~~~~~LSGGqKqRLsl------A~ALi~~P~vllLDEPTsGLDp~sr 801 (949)
....+++..+++.... .....+..||||||+|+++ |++++++|++++|||||+|||+..+
T Consensus 764 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~ 843 (895)
T PRK01156 764 SLTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRR 843 (895)
T ss_pred HHHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHH
Confidence 3455677777764110 1224688999999999875 5899999999999999999999999
Q ss_pred HHHHHHHHH-hcC--C-cEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 802 NNLWNVVKR-AKQ--G-RAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 802 ~~l~~~L~~-~~~--g-~tIIltTH~meeae~l~drI~Im~ 838 (949)
..+.+++.. .++ | .+||++||+++.+ ..|||++.+.
T Consensus 844 ~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii~~~ 883 (895)
T PRK01156 844 TNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEEEEE
Confidence 999999975 333 3 4899999999987 5799999998
No 447
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.02 E-value=5.7e-11 Score=130.15 Aligned_cols=166 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeccchHHHHHHHHHHHHHHHHH
Q 002236 367 ILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIAL 446 (949)
Q Consensus 367 ~~~~iV~EKe~klK~~m~~~Gl~~~~YWl~~~~~~l~~~~i~~i~~~i~~~~~~~~~f~~~~~~~~fv~~~lyg~s~I~~ 446 (949)
+...++.||++|.++.|+++|++...||+++++++++++++..++++++ +++...+...++...++++++|+++.+++
T Consensus 178 ~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 178 IAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999999888777666544433332 33322233336666778899999999999
Q ss_pred HHHHhHhcCchhHHHHHHHHHHH-HhHHHHHHHHHHhhcCCCCchhhhhheeccchhHHHHHHHHHHhhhhccccCCCCC
Q 002236 447 AFLVAALFSNVKTASVIGYICVF-GTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDG 525 (949)
Q Consensus 447 ~yllS~fFs~~~tA~~~~~i~~~-~~~ll~~~l~~~~~~~~~~~~~~~~~~~l~P~~~l~~gl~~l~~~~~~~~~~~~~g 525 (949)
++++|.+|++.+.|..++.++.+ ..++.+.+.. .+. .+..+..+..++|.+.+..++..+.. +
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~P~~~~~~~~~~~~~-----------~ 319 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFP---LSS--LPSFLQWISSFLPFYWFIQGLRNIIY-----------G 319 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh---HHh--hHHHHHHHHHHhhHHHHHHHHHHHHH-----------h
Confidence 99999999999988765544433 2222111111 111 11222234557899888777765431 1
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 002236 526 MSWADLSDSENGMKEVLIIMFVEWLLLLGIAYY 558 (949)
Q Consensus 526 ~~w~~~~~~~~g~~~~l~~m~i~~~l~lll~~y 558 (949)
- |.. +...++++++.+++++++++|
T Consensus 320 ~-~~~-------~~~~~~~l~~~~~v~~~l~~~ 344 (344)
T PF12698_consen 320 D-WSE-------IWISLIILLLFAVVYLLLAIL 344 (344)
T ss_dssp ---------------------------------
T ss_pred c-HHH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 1 111 224567788888888888775
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.01 E-value=4.7e-10 Score=144.63 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=71.4
Q ss_pred cccccCCCCChhHHHHHHHHHHH----cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~AL----i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~dr 833 (949)
..+..+..||||||+|+++|+++ +.+|+++|||||++|||+.++..+.++|..+.++.+||++||+++.+ .+||+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~ 1160 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQ 1160 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhh
Confidence 45678899999999999999998 47789999999999999999999999999876678999999999987 46999
Q ss_pred EEEEe
Q 002236 834 LGIFV 838 (949)
Q Consensus 834 I~Im~ 838 (949)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 87654
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.99 E-value=8e-09 Score=129.15 Aligned_cols=70 Identities=27% Similarity=0.420 Sum_probs=62.1
Q ss_pred HcCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHH---------HhcCEEEEEeCCEEEEEcCH
Q 002236 780 LIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAE---------ALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 780 Li~~P~vllLDEPTsGL-Dp~sr~~l~~~L~~~-~~g~tIIltTH~meeae---------~l~drI~Im~~G~l~~~Gs~ 848 (949)
+.++|+++++|||+.+| ||..++.+.+.++.. ++|.++|++||+++++. ..|++.++|.+|++...|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36899999999999999 799999999999986 56899999999999986 57999999999998777754
Q ss_pred H
Q 002236 849 K 849 (949)
Q Consensus 849 ~ 849 (949)
+
T Consensus 729 ~ 729 (818)
T PRK13830 729 E 729 (818)
T ss_pred H
Confidence 3
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.98 E-value=5.9e-10 Score=124.47 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=100.4
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHH
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFY 729 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~ 729 (949)
=+++.++.|+.+++.|++||||||+++.|+|++++..|.+.+.. ...-....+..+++..+...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCC--------------
Confidence 36788999999999999999999999999999999999888752 11100000111222111000
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002236 730 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 809 (949)
Q Consensus 730 ~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~ 809 (949)
. . .++....-.++.+|-.+|+++++|||.+ .+.+++++
T Consensus 200 -------------------------------~--~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~ 237 (308)
T TIGR02788 200 -------------------------------Q--G--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIR 237 (308)
T ss_pred -------------------------------C--C--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHH
Confidence 0 0 1111112345667888999999999996 45778887
Q ss_pred HhcCCc-EEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 810 RAKQGR-AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 810 ~~~~g~-tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
....|. +++.|+|..+..+ ..+|+..|..|++.+.|.+.+..
T Consensus 238 a~~~g~~~~i~T~Ha~~~~~-~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 238 AVNTGHPGSITTLHAGSPEE-AFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHhcCCCeEEEEEeCCCHHH-HHHHHHHHhhccccccCCCHHHH
Confidence 766665 6799999998555 59999999999999888777654
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.93 E-value=4.5e-09 Score=103.66 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=85.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~ 739 (949)
++.|.|++|+||||+++.+++...+..|.+.+-+.+.... .. .+.+. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~--~~-------------------~~~~~---~~~------ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE--EL-------------------TERLI---GES------ 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH--HH-------------------HHHHh---hhh------
Confidence 3689999999999999999998877666665544332211 00 01000 000
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCC----------CCCCHHHHHHHHHHHH
Q 002236 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS----------TGLDPASRNNLWNVVK 809 (949)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPT----------sGLDp~sr~~l~~~L~ 809 (949)
.....+.. ..........+.+..++...+++...+|+++++||++ .+.|+..++.+.+++.
T Consensus 51 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 51 ----LKGALDNL-----IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ----hccccccE-----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00000111 1222333445566677888999999999999999999 4666677788888877
Q ss_pred Hhc-CCcEEEEEcCCHHHHHH
Q 002236 810 RAK-QGRAIILTTHSMEEAEA 829 (949)
Q Consensus 810 ~~~-~g~tIIltTH~meeae~ 829 (949)
..+ .+.++|+++|.....+.
T Consensus 122 ~~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 122 RARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHhcCCceEEEEEecCCcccc
Confidence 765 48999999998865543
No 452
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.87 E-value=2.1e-08 Score=116.65 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=113.3
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc---HHH------hhccEEEEcCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR------IYTSMGVCPQEDL 715 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~---~~~------~r~~iG~~pQ~~~ 715 (949)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.+...|+.-+.- .++ .++.+-++-+.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 6799999 99999999999999999999999999999999998877766543321 111 1122223333221
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCC--C
Q 002236 716 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP--S 793 (949)
Q Consensus 716 L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEP--T 793 (949)
+..+... + ...--.+.+.+...|-. .--...+++- .+-|.-=++ +.+.|| +
T Consensus 230 -----~p~~r~~--~-------~~~a~t~AE~frd~G~~----Vll~~DslTr-----~A~A~REis----l~~ge~P~~ 282 (440)
T TIGR01026 230 -----SPLLRLK--G-------AYVATAIAEYFRDQGKD----VLLLMDSVTR-----FAMAQREIG----LAAGEPPAT 282 (440)
T ss_pred -----CHHHHHH--H-------HHHHHHHHHHHHHCCCC----EEEEEeChHH-----HHHHHHHHH----HhcCCCCcc
Confidence 1222111 1 11112233333333321 0011122221 111111111 234565 5
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCc-------EEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 794 TGLDPASRNNLWNVVKRAK-QGR-------AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 794 sGLDp~sr~~l~~~L~~~~-~g~-------tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.|.||.....+.+++.++. .++ ||++.+|||. +.++|++..+.+|+++..+...+...
T Consensus 283 ~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~~~~ 348 (440)
T TIGR01026 283 KGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQRGH 348 (440)
T ss_pred cccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhhCCc
Confidence 6999999999999999864 456 8899999984 66899999999999999998877643
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.83 E-value=5.2e-09 Score=135.29 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=71.4
Q ss_pred cccccCCCCChhHHHHHHHHHHHcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi~----~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~dr 833 (949)
...+.+..||||||++++||++|+. +|++++||||++|||+..+..+.++|.+..++..+|++||+.... .+||+
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-Hhcce
Confidence 3456678999999999999999984 789999999999999999999999999887778899999998755 68999
Q ss_pred EEEEeC
Q 002236 834 LGIFVD 839 (949)
Q Consensus 834 I~Im~~ 839 (949)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987753
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=1.3e-09 Score=126.01 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=48.4
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCeecCc
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRT 698 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~I~i~G~di~~ 698 (949)
+.||++||+++++||+++|+||||||||||++ .|+.+|++| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 36899999999999999999999999999999 788889888 79999999964
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.80 E-value=3e-08 Score=106.12 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=88.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh-CCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~-Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l 732 (949)
.+++|.++.+.|++|+||||+...++ +..+ ..+.+.+- ..+ -+.++.+.-..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~------------------~~e------~~~~~~~~~~~~- 74 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVI------------------TTE------NTSKSYLKQMES- 74 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEE------------------EcC------CCHHHHHHHHHH-
Confidence 58899999999999999999998774 3222 22233222 211 122222211111
Q ss_pred cCCCchhHHHHH-HHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCcEEEEeCCCCC---CCHHHHHHHHH
Q 002236 733 KNLKGPALTQAV-EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTG---LDPASRNNLWN 806 (949)
Q Consensus 733 ~g~~~~~~~~~v-~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~--~P~vllLDEPTsG---LDp~sr~~l~~ 806 (949)
.|+.- .+.+ +..+..+.+ .-......|.++++.+..++.++. +|+++++||||+. .|+...+.+.+
T Consensus 75 ~g~~~---~~~~~~g~l~i~~~-----~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 75 VKIDI---SDFFLWGYLRIFPL-----NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred CCCCh---hHHHhCCCceEEec-----cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 11110 0000 000111111 112234567889999999999998 9999999999965 45555555555
Q ss_pred HHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 807 VVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 807 ~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
.++.. ++|.|+++++|...+.+..++++..+.+|.+
T Consensus 147 ~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI 183 (234)
T PRK06067 147 EAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYL 183 (234)
T ss_pred HHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEE
Confidence 56553 4689999999987653333344444444433
No 456
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.75 E-value=2.8e-09 Score=113.47 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=85.7
Q ss_pred eeeee-EEEEeCCcEEEEECCCCCcHHHHHHHHh-CCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 647 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 647 al~~l-Sl~v~~Gei~gLLG~NGAGKTTLlk~L~-Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
-||.+ .=.+++|+++.|.|++|+||||+...++ ...++..+-+++..........+..+.+|+.+|+......+.+.|
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d 87 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIID 87 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEE
Confidence 34443 3368999999999999999999987554 233455667777764332222222345666555321111122111
Q ss_pred HHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHH
Q 002236 725 HLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 800 (949)
Q Consensus 725 ~L~~----~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~s 800 (949)
.+.- ...+.+.+.++...++.++++..++. ..++++-.+..+++|||+ ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~vvIDsl~~l~~~~~~-----~~ 141 (229)
T TIGR03881 88 ALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYG---------------------HARLVIDSMSAFWLDKPA-----MA 141 (229)
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHhhccC---------------------ceEEEecCchhhhccChH-----HH
Confidence 1100 00011122223333333333332221 022333334444444442 23
Q ss_pred HHHHHHHHHHhc-CCcEEEEEcCCHH--------HHHHhcCEEEEEe
Q 002236 801 RNNLWNVVKRAK-QGRAIILTTHSME--------EAEALCDRLGIFV 838 (949)
Q Consensus 801 r~~l~~~L~~~~-~g~tIIltTH~me--------eae~l~drI~Im~ 838 (949)
|+.++++.+.++ .|.|+|+|+|... +++.+||.|+.|+
T Consensus 142 r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 142 RKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 455555555554 5999999999654 3566778887776
No 457
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.72 E-value=5.6e-10 Score=131.96 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=107.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHH--hCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMM--IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 731 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L--~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~ 731 (949)
.+++|.++.|.|++||||||+.... .|..+..+.-++|....-..+..+..+.+|+-.+...-- ..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~------------g~ 84 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE------------GK 84 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc------------Cc
Confidence 5889999999999999999999866 566666677788876543333333334566544421100 00
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH--HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002236 732 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA--ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 809 (949)
Q Consensus 732 l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA--~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~ 809 (949)
+.-+... .......+++.+++. +..++....+|+|++|||.|+ .+|...|+.. +..|+.++++++
T Consensus 85 l~~~~~~-~~~~~~~~~~~~~l~--~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~ 151 (484)
T TIGR02655 85 LFILDAS-PDPEGQDVVGGFDLS--ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVA 151 (484)
T ss_pred eEEEecC-chhccccccccCCHH--HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHH
Confidence 0000000 001112244556664 467888889999999999999 6666665444 578899999998
Q ss_pred Hhc-CCcEEEEEcCCHHH--------H-HHhcCEEEEEe
Q 002236 810 RAK-QGRAIILTTHSMEE--------A-EALCDRLGIFV 838 (949)
Q Consensus 810 ~~~-~g~tIIltTH~mee--------a-e~l~drI~Im~ 838 (949)
.++ .|.|+|+|||++++ + +.+||.|++|+
T Consensus 152 ~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 152 RLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 864 59999999999875 2 67899999987
No 458
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.70 E-value=1.3e-08 Score=117.74 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=71.7
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE---EEcCeecCccH-------HHhhccEEEEcCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---YVQGLDIRTDM-------DRIYTSMGVCPQED 714 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I---~i~G~di~~~~-------~~~r~~iG~~pQ~~ 714 (949)
..|++++ |++.+||+++|+|+||+|||||+++|+|+.+|+.+.+ -.+|.++..-. ...|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 6799999 9999999999999999999999999999999986433 33444443211 12355799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcC
Q 002236 715 LLWETLTGREHLLFYGRLKN 734 (949)
Q Consensus 715 ~L~~~lTv~E~L~~~~~l~g 734 (949)
..+..+++.|++...+...+
T Consensus 222 s~~~rl~a~e~a~~iAEyfr 241 (434)
T PRK07196 222 SPLMRIKATELCHAIATYYR 241 (434)
T ss_pred ChhhhHHHHHHHHHHHHHhh
Confidence 99999999999988776643
No 459
>PRK02224 chromosome segregation protein; Provisional
Probab=98.70 E-value=2.8e-08 Score=125.72 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=67.3
Q ss_pred cCCCCChhHHH------HHHHHHHHcCC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC-cEEEEEcCCHHHH
Q 002236 762 QAGKYSGGMKR------RLSVAISLIGN-----P-KVVYMDEPSTGLDPASRNNLWNVVKRAK-QG-RAIILTTHSMEEA 827 (949)
Q Consensus 762 ~~~~LSGGqKq------RLslA~ALi~~-----P-~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g-~tIIltTH~meea 827 (949)
.+..||||||+ |+++|++++.+ | +++||||||+|||+..+..+.++|..+. .| .+||++||+++.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 88888888853 2 6799999999999999999999998864 35 4899999999998
Q ss_pred HHhcCEEEEEeCC
Q 002236 828 EALCDRLGIFVDG 840 (949)
Q Consensus 828 e~l~drI~Im~~G 840 (949)
. .||+++.|.+.
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 59999999754
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.68 E-value=7.3e-08 Score=99.85 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=80.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCC--CCCCCCCHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED--LLWETLTGRE 724 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~--~L~~~lTv~E 724 (949)
..+=+.+.+++|+.++|+||||||||||++.|+|+++|+.|.|.+.+..-... ..+..+++..|.. ...+..+..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 44556677889999999999999999999999999999999999976432111 1123355544432 2223333333
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
.+ ..++-.+|++++++|--. +. .
T Consensus 92 ~l--------------------------------------------------~~~lR~~pd~i~igEir~---~e----a 114 (186)
T cd01130 92 LL--------------------------------------------------RSALRMRPDRIIVGEVRG---GE----A 114 (186)
T ss_pred HH--------------------------------------------------HHHhccCCCEEEEEccCc---HH----H
Confidence 22 223445799999999863 33 3
Q ss_pred HHHHHHhcCCcE-EEEEcCCHHHH
Q 002236 805 WNVVKRAKQGRA-IILTTHSMEEA 827 (949)
Q Consensus 805 ~~~L~~~~~g~t-IIltTH~meea 827 (949)
++.++....|.. ++-|-|--+-.
T Consensus 115 ~~~~~a~~tGh~g~~~T~Ha~s~~ 138 (186)
T cd01130 115 LDLLQAMNTGHPGGMTTIHANSAE 138 (186)
T ss_pred HHHHHHHhcCCCCceeeecCCCHH
Confidence 455666667776 77777765433
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.67 E-value=1.9e-08 Score=104.84 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=72.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~ 739 (949)
++||.|++|||||||.++|.+++ ..|.+.+-+.| +. +..++..+.........+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D------------------~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD------------------SY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec------------------cc-ccccccccHHHhccCCCCCCCcc
Confidence 58999999999999999999988 34444443333 21 11122222221111112222222
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH
Q 002236 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~ 799 (949)
..+...+.++.+... +..+.+..++|.|++++..+ .+.+++++|+|+|..+.++.
T Consensus 60 ~~~~~~~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 223445566666654 35677888999999876655 57889999999999999873
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=5.2e-08 Score=111.41 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=57.9
Q ss_pred CCCChhHHHHHHHHHHHcC---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHH
Q 002236 764 GKYSGGMKRRLSVAISLIG---------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 828 (949)
Q Consensus 764 ~~LSGGqKqRLslA~ALi~---------~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae 828 (949)
..+|.||||++.+|.+|+. +|+|++||||+++||+..|+.+++.|.+. |..+++|||+++.++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3689999999999999999 99999999999999999999999999754 679999999998765
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.60 E-value=1.1e-07 Score=99.58 Aligned_cols=119 Identities=20% Similarity=0.286 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 738 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~ 738 (949)
++.|.||+||||||+++.|.+.+.+ ..|.|.....++..... ...+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~---~~~~~i~q~~------------------------ 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE---SKRSLINQRE------------------------ 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc---Cccceeeecc------------------------
Confidence 6899999999999999998887764 35676654433311000 0001111100
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 002236 739 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 818 (949)
Q Consensus 739 ~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tII 818 (949)
++. ....++. .+++||..+|+++++|||. |+.. ++..++....|+.++
T Consensus 56 ------------vg~--------~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~ 103 (198)
T cd01131 56 ------------VGL--------DTLSFEN------ALKAALRQDPDVILVGEMR---DLET---IRLALTAAETGHLVM 103 (198)
T ss_pred ------------cCC--------CccCHHH------HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEE
Confidence 010 0111211 4778899999999999996 5553 455555556799999
Q ss_pred EEcCCHHHHHHhcCEEEEEe
Q 002236 819 LTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 819 ltTH~meeae~l~drI~Im~ 838 (949)
.|+|..+.++. .+|+..|.
T Consensus 104 ~t~Ha~~~~~~-~~Rl~~l~ 122 (198)
T cd01131 104 STLHTNSAAKT-IDRIIDVF 122 (198)
T ss_pred EEecCCcHHHH-HhHHHhhc
Confidence 99999987754 78987664
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.59 E-value=9.9e-07 Score=83.34 Aligned_cols=117 Identities=26% Similarity=0.395 Sum_probs=82.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 735 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts-G~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~ 735 (949)
++..+.|.||+|+||||+++.|++.+.... +-++++...........+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999888765 5555555433221110000
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH------HHH
Q 002236 736 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN------VVK 809 (949)
Q Consensus 736 ~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~------~L~ 809 (949)
. ...........+++..+..+++|--.+|+++++||+..-.+......... ...
T Consensus 51 ------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 51 ------------------L--IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred ------------------h--hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0 12234445677888888888888888899999999999999988877654 122
Q ss_pred -HhcCCcEEEEEcCC
Q 002236 810 -RAKQGRAIILTTHS 823 (949)
Q Consensus 810 -~~~~g~tIIltTH~ 823 (949)
....+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 23457888999984
No 465
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=1.4e-07 Score=109.53 Aligned_cols=86 Identities=15% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc---CeecCc--
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ---GLDIRT-- 698 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~---G~di~~-- 698 (949)
...+..+++++.|.. ...+++.++ .+.+||+++|+|+||+|||||+++|+|+.+|+.|.+.+. |.++..
T Consensus 137 p~~~~r~~v~~~l~T-----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 137 PPAMTRARVETGLRT-----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210 (450)
T ss_pred CCCeEeecceEEcCC-----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHh
Confidence 346899999999974 367999996 999999999999999999999999999999999999886 455542
Q ss_pred --cHHH-hhccEEEEcCCCC
Q 002236 699 --DMDR-IYTSMGVCPQEDL 715 (949)
Q Consensus 699 --~~~~-~r~~iG~~pQ~~~ 715 (949)
.... .++.|++++|.+.
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 1122 2367999999764
No 466
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.54 E-value=7.6e-07 Score=91.34 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=63.4
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 836 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~I 836 (949)
+..+....-|-|+-=---+.+.+-+ --+.|||||-++|-|.-+-.+...|+++ +.|.-|||.||+.=...-=.-+|.-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~ 200 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYE 200 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEE
Confidence 3455566789999776666666665 5799999999999999999999999986 5699999999997554333345665
Q ss_pred EeCCE
Q 002236 837 FVDGS 841 (949)
Q Consensus 837 m~~G~ 841 (949)
++.|.
T Consensus 201 ~~~~g 205 (233)
T COG3910 201 ISESG 205 (233)
T ss_pred EecCC
Confidence 65554
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.52 E-value=2.7e-07 Score=99.23 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=38.2
Q ss_pred HcCCCcEEEEeCCCC------CCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHH
Q 002236 780 LIGNPKVVYMDEPST------GLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEE 826 (949)
Q Consensus 780 Li~~P~vllLDEPTs------GLDp~sr~~l~~~L~~~-~-~g~tIIltTH~mee 826 (949)
...+|+++++| |.+ .+|+..++.+++.|+++ + .|.+||+++|....
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 35799999999 765 47999999999999875 3 48999999998653
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.47 E-value=3.2e-07 Score=115.20 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=92.8
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEE-EEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG-~~pQ~~~L~~~lTv~ 723 (949)
..+=+|+++. +.+.+..|.|||++||||++|.++-.. +..++| |||=...- +.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~--------------------ilAq~G~~VPa~~a~---i~~~ 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIV--------------------LLAQIGSFVPAESAR---IGIV 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHH--------------------HHHhcCCceeccceE---eccc
Confidence 3466788888 778899999999999999999975321 111121 22221110 0001
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCcEEEEeCC---CCCCCH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEP---STGLDP 798 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~--~P~vllLDEP---TsGLDp 798 (949)
++++.++|- .|.....+|-=|.....++.+|-. +++++||||| |+.+|.
T Consensus 651 ---------------------d~I~triga-----~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg 704 (854)
T PRK05399 651 ---------------------DRIFTRIGA-----SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG 704 (854)
T ss_pred ---------------------CeeeeccCc-----ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh
Confidence 111112222 244445677777777777776655 8999999999 888884
Q ss_pred HHHHHHHHHHHHhc-C-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 799 ASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 799 ~sr~~l~~~L~~~~-~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
.+ ..|.+++.+. . |.++|++||+ .|+.+++++.--+.+..+.+.
T Consensus 705 ~a--ia~aile~l~~~~~~~~l~aTH~-~el~~l~~~~~~v~n~~m~~~ 750 (854)
T PRK05399 705 LS--IAWAVAEYLHDKIGAKTLFATHY-HELTELEEKLPGVKNVHVAVK 750 (854)
T ss_pred HH--HHHHHHHHHHhcCCceEEEEech-HHHHHHhhhcCCeEEEEEEEE
Confidence 44 5777777753 3 5899999999 555667876433444444443
No 469
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.43 E-value=3.9e-06 Score=105.78 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=49.3
Q ss_pred HHHHHcCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 829 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGL-Dp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~ 829 (949)
+++++.++|+++++|||+.+| ||..++.+.+.++.. +.|.+++++||+++++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 577889999999999999999 799999999999886 568999999999999875
No 470
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.35 E-value=2.4e-06 Score=104.00 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=78.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--------eEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHH
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--------TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG--------~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~ 727 (949)
...+.+.|+||||+||||+.+++.++.++..| -+.++|.++..+...+. ..++.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~---------~~llg--------- 234 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT---------NPLLG--------- 234 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh---------HHhcC---------
Confidence 34567999999999999999999999876554 37777765432211110 00111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002236 728 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 807 (949)
Q Consensus 728 ~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~ 807 (949)
. ..+...+...+.++.+|+. ...+..+.++||| +|+||| +..||+..+..+.+.
T Consensus 235 ---~----~~~~~~~~a~~~l~~~gl~--~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 235 ---S----VHDPIYQGARRDLAETGVP--EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred ---C----ccHHHHHHHHHHHHHcCCC--chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 0 1112223455667888886 3678888999999 999999 799999999999999
Q ss_pred HHH
Q 002236 808 VKR 810 (949)
Q Consensus 808 L~~ 810 (949)
+++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 865
No 471
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.34 E-value=4.2e-07 Score=106.76 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=96.0
Q ss_pred eeeee-EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcce-EEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 647 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 647 al~~l-Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~-I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
-||.+ .=.+.+|+++.|.|++|+|||||+..++.......|+ +++.+.+...+.....+++|+..+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~------------ 149 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP------------ 149 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH------------
Confidence 34444 2368999999999999999999999998766555454 477776432221111123332111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCC--------
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL-------- 796 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGL-------- 796 (949)
++.+. .... ++++ +..+ --.+|+++++|.-++=.
T Consensus 150 ~l~~~------~e~~----~~~I--------------------------~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~ 191 (454)
T TIGR00416 150 NLYVL------SETN----WEQI--------------------------CANI--EEENPQACVIDSIQTLYSPDISSAP 191 (454)
T ss_pred HeEEc------CCCC----HHHH--------------------------HHHH--HhcCCcEEEEecchhhcccccccCC
Confidence 11100 0000 0001 0101 11478999999765421
Q ss_pred -CHHHHHHHHHHHHH-hc-CCcEEEEEcCCHHH--------HHHhcCEEEEEeCCEEEEEcCHHHHHHhcCC
Q 002236 797 -DPASRNNLWNVVKR-AK-QGRAIILTTHSMEE--------AEALCDRLGIFVDGSLQCIGNPKELKARYGG 857 (949)
Q Consensus 797 -Dp~sr~~l~~~L~~-~~-~g~tIIltTH~mee--------ae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~ 857 (949)
++...+++...|.+ ++ .|.|+++|+|...+ ++.++|.|+.|+.++.........+|+++|.
T Consensus 192 g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~ 263 (454)
T TIGR00416 192 GSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGA 263 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCC
Confidence 12334444444544 44 49999999998765 6889999999998765444556667888774
No 472
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.33 E-value=7.2e-07 Score=117.04 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=56.8
Q ss_pred cccccCCCCChhHHHHHH----HHHH--------HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCH
Q 002236 758 VADKQAGKYSGGMKRRLS----VAIS--------LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 824 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLs----lA~A--------Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~m 824 (949)
..++..+.||||||||+. +|++ +..+|++++||||++|||+.+++.+++++.+. |.++|||||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 456668999999999996 4644 55899999999999999999999999999887 67899999985
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=2.3e-06 Score=111.45 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=83.9
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCC-CCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHh
Q 002236 652 SLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 730 (949)
Q Consensus 652 Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl-~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~ 730 (949)
+++.++++++||+|++|+|||||++.+.+. ....+|.+++++..+...... +-.+...-+ ....++
T Consensus 201 ~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~------~~~~~~~~~---~~~~~l---- 267 (1153)
T PLN03210 201 HLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEI------YSSANPDDY---NMKLHL---- 267 (1153)
T ss_pred ccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhh------ccccccccc---chhHHH----
Confidence 344556889999999999999999999554 445689999876433221100 000000000 000011
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002236 731 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 810 (949)
Q Consensus 731 ~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~ 810 (949)
.++.+.++++..++. +..+ ++.|+|+ .+++-+|+||+- |. ...|+.+..
T Consensus 268 ---------~~~~l~~il~~~~~~--------~~~~-~~~~~~L------~~krvLLVLDdv----~~---~~~l~~L~~ 316 (1153)
T PLN03210 268 ---------QRAFLSEILDKKDIK--------IYHL-GAMEERL------KHRKVLIFIDDL----DD---QDVLDALAG 316 (1153)
T ss_pred ---------HHHHHHHHhCCCCcc--------cCCH-HHHHHHH------hCCeEEEEEeCC----CC---HHHHHHHHh
Confidence 122334444444432 2222 6677763 466778888883 32 345676655
Q ss_pred h----cCCcEEEEEcCCHHHHHHh-cCEEEEE
Q 002236 811 A----KQGRAIILTTHSMEEAEAL-CDRLGIF 837 (949)
Q Consensus 811 ~----~~g~tIIltTH~meeae~l-~drI~Im 837 (949)
. ..|.+||+|||+.+.+... +|++.-+
T Consensus 317 ~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 3 3588999999999998765 6776554
No 474
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.30 E-value=1.3e-06 Score=101.61 Aligned_cols=167 Identities=17% Similarity=0.259 Sum_probs=106.9
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcC---eecCccH-HHh---hccEEEE-----c
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQG---LDIRTDM-DRI---YTSMGVC-----P 711 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i~G---~di~~~~-~~~---r~~iG~~-----p 711 (949)
..|++++ |++.+||.++|+|+||+|||||+++|+|+.++ +.|.+.+.| .++..-. +.+ ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5799998 99999999999999999999999999999854 446666644 5553211 111 1235555 8
Q ss_pred CCCC--CCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCC---CCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 712 QEDL--LWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLF---HGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 712 Q~~~--L~~~lTv~E~L~~~~~l~g~~---~~~~~~~v~~~L~~l~L~---~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
|.+. +.+.+ +...+.-+.+.+|.. ..+...++.+++++++|. .......++..||.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~--------------- 294 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST--------------- 294 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH---------------
Confidence 8752 33333 333343333444432 245677889999999983 11244555555542
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh---cCCc-----EEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHH
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA---KQGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 850 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~---~~g~-----tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~ 850 (949)
+-.++.++ .+|. ||.+..+||++. ++|.+.-+-||+++-.-...+
T Consensus 295 --------------------l~~llERag~~~~GSITai~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~la~ 347 (442)
T PRK06315 295 --------------------LPKLLERSGASDKGTITAFYTVLVAGDDMNEP--VADEVKSILDGHIVLSNALAQ 347 (442)
T ss_pred --------------------hHHHHHHhcCCCCcceeeeEEEEecCCCCCcc--cHHHhhhhcceEEEEeccHHH
Confidence 22233332 2232 566777787754 678888888999998765543
No 475
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.28 E-value=3.7e-07 Score=89.95 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=76.1
Q ss_pred EEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcCeecCccHHHhhccEEEEcCC-CCCC-----------------CCC
Q 002236 661 FGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE-DLLW-----------------ETL 720 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~--Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~-~~L~-----------------~~l 720 (949)
++|+|++|||||||++.|+ +..++.+|+.... .++... .... .++.-+ +.+. ..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t-~~~~~~--~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKT-QLINFF--NVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcc-eeEEEE--EccC--eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999 7777777764221 110000 0000 111111 0000 001
Q ss_pred CHHHHHHHHhhh--cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HcCCCcEEEEeCCC
Q 002236 721 TGREHLLFYGRL--KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDEPS 793 (949)
Q Consensus 721 Tv~E~L~~~~~l--~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A-----Li~~P~vllLDEPT 793 (949)
+.++++.....+ ...........+.+.++..+..- -....++..++++++++...... ....++++ |+
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~v-i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 151 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPF-LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LF 151 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCE-EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EE
Confidence 111111111011 01111233344556677666421 12344567789998887765554 24556666 99
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002236 794 TGLDPASRNNLWNVVKR 810 (949)
Q Consensus 794 sGLDp~sr~~l~~~L~~ 810 (949)
+++|+...+++++.|.+
T Consensus 152 Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 152 SSLKGQGIDELRALIEK 168 (170)
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 99999999999999875
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.28 E-value=5.6e-07 Score=92.75 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHH
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 727 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~ 727 (949)
+||+++|+|+|||||||++++|+|++.+ +.++|.++.......+...|+.+|+...++.+++.++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 5999999999999999999999999987 688998875432222224566666654444444444443
No 477
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.27 E-value=1.3e-06 Score=91.19 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=26.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
++|++++|+||+|||||||+++|.+.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.27 E-value=1.9e-05 Score=99.23 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=45.5
Q ss_pred HHcCCCcEEEEeCCCCCCC-HHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHH
Q 002236 779 SLIGNPKVVYMDEPSTGLD-PASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 829 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLD-p~sr~~l~~~L~~~-~~g~tIIltTH~meeae~ 829 (949)
.+.++|+++++|||..+|| |..++.+.+.++.. +.|..++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4678999999999999999 99999999999986 568899999999988654
No 479
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.26 E-value=8e-07 Score=98.49 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=58.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC--CCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~--ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~ 733 (949)
.++||.|+||||||||.++|.+++. |++|+|.+-+.|-.....+.++..|+. |.....+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 4999999999999999999999998 889998886666433333344556754 6667778899999888877775
No 480
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.23 E-value=1.3e-06 Score=93.49 Aligned_cols=73 Identities=21% Similarity=0.385 Sum_probs=54.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcce----EEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~----I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l 732 (949)
+..++||.|+||||||||++.|++++++++|. +.+++.... ...+...|++++.+ ..+.+++.+.+.+...+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~---~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD---NAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC---HHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 36799999999999999999999999999998 444443222 23344578887744 34667888877776666
Q ss_pred c
Q 002236 733 K 733 (949)
Q Consensus 733 ~ 733 (949)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 5
No 481
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.19 E-value=4.3e-06 Score=106.40 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=66.6
Q ss_pred ccCCCCChhHHHHHHHHHHH------cCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhc
Q 002236 761 KQAGKYSGGMKRRLSVAISL------IGN--PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC 831 (949)
Q Consensus 761 ~~~~~LSGGqKqRLslA~AL------i~~--P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~ 831 (949)
+.+.+||||++-.++||.+| .++ -+.+||||||..||+..++.+.++|..+. .++.|+++||+-+..+ .+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-RA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-hC
Confidence 67899999999987777765 456 69999999999999999999999999864 4899999999966665 57
Q ss_pred CEEEEEeCC
Q 002236 832 DRLGIFVDG 840 (949)
Q Consensus 832 drI~Im~~G 840 (949)
|+++.+...
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 877776643
No 482
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.19 E-value=7.6e-07 Score=91.59 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH--HHHHHcC-CCcEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 002236 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS--VAISLIG-NPKVVYMDEPSTGLDPASRNNLWNVVKRA 811 (949)
Q Consensus 742 ~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs--lA~ALi~-~P~vllLDEPTsGLDp~sr~~l~~~L~~~ 811 (949)
..+.+.++..++.- -..-.++..+|+|+++++. ++..+-. +++++ |+|++|+.+.+++.+.|.++
T Consensus 125 ~~i~~~l~~~~~~~-iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 125 LQMIEWLKEYGIPV-LIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHHHcCCcE-EEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 34556666666531 2345577789999999877 4444433 33443 99999999999999999874
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.18 E-value=1.2e-05 Score=91.56 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=77.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~ 733 (949)
..++..+.+.||+||||||+++.|.+.+. +..|.|..-+.++.... ....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~---~~~~~~i~q~-------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH---RNKRSLINQR-------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc---cCccceEEcc--------------------
Confidence 45688999999999999999999998665 44677655443321100 0000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 002236 734 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 813 (949)
Q Consensus 734 g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~ 813 (949)
.++.. ..+ -.-+++.||-.+|+++++||+. |+.+... .++....
T Consensus 176 ----------------evg~~--------~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~---~l~aa~t 219 (343)
T TIGR01420 176 ----------------EVGLD--------TLS------FANALRAALREDPDVILIGEMR---DLETVEL---ALTAAET 219 (343)
T ss_pred ----------------ccCCC--------CcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHH---HHHHHHc
Confidence 01100 000 1234677888999999999997 8876643 3444567
Q ss_pred CcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 814 GRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 814 g~tIIltTH~meeae~l~drI~Im 837 (949)
|+.++.|.|..+.++. .+|+.-|
T Consensus 220 Gh~v~~T~Ha~~~~~~-~~Rl~~~ 242 (343)
T TIGR01420 220 GHLVFGTLHTNSAAQT-IERIIDV 242 (343)
T ss_pred CCcEEEEEcCCCHHHH-HHHHHHh
Confidence 9999999999766654 5776544
No 484
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.13 E-value=3.1e-06 Score=87.72 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHH--HHHhcCEEEEEeCC
Q 002236 769 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE--AEALCDRLGIFVDG 840 (949)
Q Consensus 769 GqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~mee--ae~l~drI~Im~~G 840 (949)
|+-+|..||.++..+|+.+..+| +.+||..++.+++.+.+.. +|.+||+.+|.+.| ...+||+++++..+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 8999999999999998764 46899999999976 78899999887654
No 485
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=9e-06 Score=92.98 Aligned_cols=73 Identities=19% Similarity=0.419 Sum_probs=54.8
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
..++++.++.+++|++++|+||||+|||||+..|++......|. ++++++..+.. .....|
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------------~~V~lit~D~~---R~ga~E 184 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------------SKVALLTTDSY---RIGGHE 184 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------------CeEEEEecccc---cccHHH
Confidence 34777888889999999999999999999999999865222121 35677765543 236789
Q ss_pred HHHHHhhhcCCC
Q 002236 725 HLLFYGRLKNLK 736 (949)
Q Consensus 725 ~L~~~~~l~g~~ 736 (949)
+|..|+++.|++
T Consensus 185 qL~~~a~~~gv~ 196 (374)
T PRK14722 185 QLRIFGKILGVP 196 (374)
T ss_pred HHHHHHHHcCCc
Confidence 999888777654
No 486
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.08 E-value=7.1e-06 Score=87.25 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=44.1
Q ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCC---------HHHHHHhcCEEEEEe
Q 002236 782 GNPKVVYMDE-----PSTGLDPASRNNLWNVVKRAK-QGRAIILTTHS---------MEEAEALCDRLGIFV 838 (949)
Q Consensus 782 ~~P~vllLDE-----PTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~---------meeae~l~drI~Im~ 838 (949)
.+++++++|- |..+.|+..|+.++++++.++ .|.|+++++|. +.+++.+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 3588999993 344566777888898888864 58999999995 344788999999994
No 487
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=1.6e-05 Score=97.69 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=52.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
++++.++.+++|++++|+||||+||||++..|++.+....|. ++++++..+. ......|.+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------------kkV~lit~Dt---~RigA~eQL 234 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----------------DQLALLTTDS---FRIGALEQL 234 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------------CeEEEecCcc---cchHHHHHH
Confidence 556667777889999999999999999999999988655541 2345555442 123467888
Q ss_pred HHHhhhcCCC
Q 002236 727 LFYGRLKNLK 736 (949)
Q Consensus 727 ~~~~~l~g~~ 736 (949)
..|+++.+++
T Consensus 235 ~~~a~~~gvp 244 (767)
T PRK14723 235 RIYGRILGVP 244 (767)
T ss_pred HHHHHhCCCC
Confidence 8888777654
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=98.02 E-value=7.3e-06 Score=95.10 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=57.9
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCeecCccHHH-----hhccEEEEcCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDR-----IYTSMGVCPQE 713 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts---G~I~i~G~di~~~~~~-----~r~~iG~~pQ~ 713 (949)
..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|-..|.++..-.++ .++++++++..
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 5799999 9999999999999999999999999999999988 9999999988642222 23577887764
No 489
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.02 E-value=4e-06 Score=93.02 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=62.9
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCeecCccHHHhhc-cEEEEcCCCCC---C-CC
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYT-SMGVCPQEDLL---W-ET 719 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i---~G~di~~~~~~~r~-~iG~~pQ~~~L---~-~~ 719 (949)
++.+...+. +++++++|+||+|||||+|.|.|...++.|++.. .|...+.....++. ..|++.+.+.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444454 5899999999999999999999999999999976 45544443333333 37899998876 3 46
Q ss_pred CCHHHHHHHHhhhc
Q 002236 720 LTGREHLLFYGRLK 733 (949)
Q Consensus 720 lTv~E~L~~~~~l~ 733 (949)
++..|...++..++
T Consensus 231 ~~~~~~~~~f~~~~ 244 (287)
T cd01854 231 IDPEELAHYFPEFR 244 (287)
T ss_pred CCHHHHHHHhHHHH
Confidence 88888888776543
No 490
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.99 E-value=8.9e-06 Score=93.32 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=86.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I-~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l 732 (949)
.+.+|+++.|.|++|+|||||+..++.......|.+ ++.|.+...+.....+++|+-.++..++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e------------- 144 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAE------------- 144 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEcc-------------
Confidence 589999999999999999999999988776655665 556653221111111233322111000000
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC----CCC-----HHHHHH
Q 002236 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST----GLD-----PASRNN 803 (949)
Q Consensus 733 ~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs----GLD-----p~sr~~ 803 (949)
. .++++++ .+ --.+|+++++|+-.+ .+| ....|+
T Consensus 145 -----~----~le~I~~--------------------------~i--~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~ 187 (372)
T cd01121 145 -----T----NLEDILA--------------------------SI--EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRE 187 (372)
T ss_pred -----C----cHHHHHH--------------------------HH--HhcCCcEEEEcchHHhhccccccCCCCHHHHHH
Confidence 0 0011111 01 124799999999632 333 222334
Q ss_pred HHHHHHH-hc-CCcEEEEEcCCHHH--------HHHhcCEEEEEeCCEEEEEcCHHHHHHhcCC
Q 002236 804 LWNVVKR-AK-QGRAIILTTHSMEE--------AEALCDRLGIFVDGSLQCIGNPKELKARYGG 857 (949)
Q Consensus 804 l~~~L~~-~~-~g~tIIltTH~mee--------ae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~ 857 (949)
+...|.+ ++ .|.++|++.|-..+ .+.++|.++.++.++-...-....+|+|++.
T Consensus 188 ~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~KnR~g~ 251 (372)
T cd01121 188 CTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRHSEYRILRSVKNRFGS 251 (372)
T ss_pred HHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCCCCcEEEEEEEeCCCCC
Confidence 4444444 34 48999999995443 6888999998876542111112335677664
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=5.9e-06 Score=92.91 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=55.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-------HHHhhccEEEEcCCCCCCCCCCHHHHHH
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-------MDRIYTSMGVCPQEDLLWETLTGREHLL 727 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-------~~~~r~~iG~~pQ~~~L~~~lTv~E~L~ 727 (949)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|.... ....+..+++++|.....+..++++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999999999999989999998887431 1223467889988655444444555543
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.98 E-value=9.1e-06 Score=84.17 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=40.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHHhhccEEEEcCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQE 713 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~~r~~iG~~pQ~ 713 (949)
|++++|+|||||||||++++|++...+ .+.+.+..+... ....+..+++.+|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999999876 577777766542 22233456666654
No 493
>PRK01889 GTPase RsgA; Reviewed
Probab=97.98 E-value=1.2e-05 Score=91.89 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=63.1
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
-++.+.-.+++|++++|+|+||+|||||++.|+|...++.|+|.++|..... ...++.+++++|...+++. .+..++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666678999999999999999999999999999999999998754321 2235689999999888864 566555
Q ss_pred HHH
Q 002236 727 LFY 729 (949)
Q Consensus 727 ~~~ 729 (949)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 543
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.97 E-value=2.7e-06 Score=89.52 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=27.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
++|+++||.|+||||||||++.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 495
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.94 E-value=1.4e-05 Score=73.64 Aligned_cols=52 Identities=23% Similarity=0.528 Sum_probs=40.1
Q ss_pred ccccCCCCChhHHH-HHHHHHH------HcC------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002236 759 ADKQAGKYSGGMKR-RLSVAIS------LIG------NPKVVYMDEPSTGLDPASRNNLWNVVKR 810 (949)
Q Consensus 759 ~~~~~~~LSGGqKq-RLslA~A------Li~------~P~vllLDEPTsGLDp~sr~~l~~~L~~ 810 (949)
..+..+++|||||| .+.+|.+ +-. .|++++||||+++||+..++.+.+++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35778999999994 4444433 333 3799999999999999999999999864
No 496
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=6.8e-06 Score=95.29 Aligned_cols=64 Identities=23% Similarity=0.495 Sum_probs=43.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN 734 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g 734 (949)
+++|++++|+||||+|||||++.|+|...-..| ...+|++..+.. .....|.+.+++++.|
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------------~~~v~~i~~d~~---rigalEQL~~~a~ilG 248 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------------ADKVALLTTDSY---RIGGHEQLRIYGKLLG 248 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecCCc---chhHHHHHHHHHHHcC
Confidence 368999999999999999999999985311111 012444444432 2367788888887777
Q ss_pred CCc
Q 002236 735 LKG 737 (949)
Q Consensus 735 ~~~ 737 (949)
++.
T Consensus 249 vp~ 251 (420)
T PRK14721 249 VSV 251 (420)
T ss_pred Cce
Confidence 653
No 497
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.93 E-value=9.1e-06 Score=94.46 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=57.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d 695 (949)
..++.+.+++.+.. ...|++++ +.+.+||.++|+|+||+|||||+++|+|+..++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~t-----Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMT-----GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCC-----Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 35777888888853 36799999 9999999999999999999999999999999999988877764
No 498
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.93 E-value=1.5e-05 Score=89.73 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=46.9
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di 696 (949)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+..-|++-
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 6799999 99999999999999999999999999999999999888766543
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=97.91 E-value=2.6e-05 Score=85.39 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=38.6
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 628 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 628 ~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.+++..+.+.....+.....|.+++| +++|+.+.|+||+|+|||+|...|+...
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555555543211112246778888 9999999999999999999999996543
No 500
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.90 E-value=4.3e-05 Score=73.03 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCcEEEEEcCCHH
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK------QGRAIILTTHSME 825 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~------~g~tIIltTH~me 825 (949)
++......+...++.++++||.-.. ++.....+.+.+.... .+..+|++|+..+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555666677788999999998765 6677778888887742 4678899988765
Done!